BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024285
(269 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5SRE7|PHYD1_HUMAN Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Homo
sapiens GN=PHYHD1 PE=1 SV=2
Length = 291
Score = 251 bits (642), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 131/276 (47%), Positives = 172/276 (62%), Gaps = 15/276 (5%)
Query: 7 LNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKV 62
L+ L F G++VLE F S EE AM++++ ++ D C T FST ++++
Sbjct: 4 LSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTE--FSTQEEEQL 61
Query: 63 ----TDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSE 118
+ DYF S +KI FFFE+ F + GN P E SINK+GHALH DPVFK + S
Sbjct: 62 RAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSF 121
Query: 119 KTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDAT 177
K L SLG + PV +QSMYIFKQP GGEV PHQD SFL TEP G+W+A+EDAT
Sbjct: 122 KVQTLARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDAT 181
Query: 178 IINGCLWAIPGSHKNGLVRRFIRG----EEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIH 233
+ NGCLW IPGSH +G+ RR +R G F P+ D + FVP V+ G+LVLIH
Sbjct: 182 LENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIH 241
Query: 234 GDLIHQSFENQSSKSRHAYSLHVVETDGCRWSQENW 269
G+++H+S +N S +SR AY+ H++E G WS ENW
Sbjct: 242 GEVVHKSKQNLSDRSRQAYTFHLMEASGTTWSPENW 277
>sp|Q0IIB1|PHYD1_BOVIN Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Bos taurus
GN=PHYHD1 PE=2 SV=1
Length = 291
Score = 251 bits (641), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 131/276 (47%), Positives = 170/276 (61%), Gaps = 15/276 (5%)
Query: 7 LNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKV 62
L+ L F G++VLE F S +E EAM++++D ++ D C T FST ++++
Sbjct: 4 LSPSQLQKFQEDGFLVLEGFLSADECEAMQRRIDEIVAKMDVPLHCRTE--FSTQEEEQL 61
Query: 63 ----TDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSE 118
+ DYF S +KI FFFE+ F GN P E SINK+GHALH LDP+F+ + S
Sbjct: 62 RAQGSTDYFLSSGDKIRFFFEKGVFDKQGNFLVPPEKSINKIGHALHALDPIFRCVTHSH 121
Query: 119 KTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDAT 177
K L SLG + PV +QSMYIFKQP GGEV PHQD SFL TEP GLW+ALEDA
Sbjct: 122 KVQALARSLGLQMPVVVQSMYIFKQPHFGGEVAPHQDASFLYTEPLGRVLGLWIALEDAM 181
Query: 178 IINGCLWAIPGSHKNGLVRRFIRGEE----GVYFDRPPPSYDQNDFVPIEVKAGSLVLIH 233
+ NGCLW IPGSH G+ RR +R G F P D + FVP V G+LVLIH
Sbjct: 182 LENGCLWFIPGSHTGGVSRRMVRTPAGSVPGTSFLGSEPIRDNSLFVPTPVLRGALVLIH 241
Query: 234 GDLIHQSFENQSSKSRHAYSLHVVETDGCRWSQENW 269
G+++H+S +N S +SR AY+ H++E G WS +NW
Sbjct: 242 GEVVHKSEQNLSDRSRQAYTFHLMEAAGTIWSPDNW 277
>sp|Q5U3U0|PHYD1_DANRE Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Danio
rerio GN=phyhd1 PE=2 SV=1
Length = 291
Score = 249 bits (636), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 126/276 (45%), Positives = 169/276 (61%), Gaps = 15/276 (5%)
Query: 7 LNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKV 62
L ++ F +GY+VLE S EE +A+R++M +++ D C T FST + +++
Sbjct: 4 LTDQDVQKFRDEGYLVLEGLLSPEECDALRRRMSEIIESMDVPEHCRTQ--FSTDHDEQL 61
Query: 63 TD----DYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSE 118
DYF S +KI FFFE+ F D G PKE S+NK+GHALH +P+FK+ + S
Sbjct: 62 KTQGNADYFITSGDKIRFFFEKGVFDDKGEFVVPKEQSLNKIGHALHAYEPLFKRVTHSP 121
Query: 119 KTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDAT 177
K N+ L PV +QSMYIFKQPGIGGEV PHQD +FL T+P G+W+ALEDA
Sbjct: 122 KVQNICKKLELINPVILQSMYIFKQPGIGGEVTPHQDATFLYTQPLGRVMGVWVALEDAM 181
Query: 178 IINGCLWAIPGSHKNGLVRRFIRGEEGVY----FDRPPPSYDQNDFVPIEVKAGSLVLIH 233
NGCLW IPGSH +G+ RR +R +G + F YD FVP VK G VLIH
Sbjct: 182 QENGCLWFIPGSHNDGITRRMVRTPKGTFPLTDFIGREKDYDDKLFVPAPVKKGGAVLIH 241
Query: 234 GDLIHQSFENQSSKSRHAYSLHVVETDGCRWSQENW 269
G+++H+S N S SRH Y+ H++E++ WS ENW
Sbjct: 242 GEVVHRSAANTSDASRHVYTFHIMESENTVWSPENW 277
>sp|Q9DB26|PHYD1_MOUSE Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Mus
musculus GN=Phyhd1 PE=2 SV=2
Length = 291
Score = 242 bits (617), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 126/276 (45%), Positives = 168/276 (60%), Gaps = 15/276 (5%)
Query: 7 LNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKV 62
L+ L F G+++LE F + +E AM++++ ++ D C T FST +++
Sbjct: 4 LSPSQLKKFQEDGFLLLEGFFTADECVAMQQRIGEIVAEMDVPLHCRTE--FSTQEDEQL 61
Query: 63 ----TDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSE 118
DYF S +KI FFFE+ F + GN P E SINK+GHALH DPVF+ + S
Sbjct: 62 QTQGKTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFRSITHSP 121
Query: 119 KTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDAT 177
K L+ SLG + PV +QSMYIFKQP GGEV PHQD +FL TEP GLW+A+EDA
Sbjct: 122 KVQALVRSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDATFLYTEPLGRVLGLWIAMEDAM 181
Query: 178 IINGCLWAIPGSHKNGLVRRFIRGEE----GVYFDRPPPSYDQNDFVPIEVKAGSLVLIH 233
+ NGCLW IPGSH G+ RR IR G F P++ N FVP+ V+ G LVLIH
Sbjct: 182 LENGCLWFIPGSHTRGVSRRMIRAPSDSGPGTSFLGSDPAWASNLFVPLPVRRGGLVLIH 241
Query: 234 GDLIHQSFENQSSKSRHAYSLHVVETDGCRWSQENW 269
G+++H+S +N S SR AY++H++E G WS NW
Sbjct: 242 GEVVHKSEQNHSDHSRQAYTVHLMEAAGTVWSPGNW 277
>sp|Q5BJP9|PHYD1_RAT Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Rattus
norvegicus GN=Phyhd1 PE=2 SV=1
Length = 291
Score = 240 bits (612), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 126/276 (45%), Positives = 167/276 (60%), Gaps = 15/276 (5%)
Query: 7 LNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKV 62
L+ L F G+++LE F + +E M++++ ++ D C T FST +++
Sbjct: 4 LSPSQLKKFQEDGFLLLEGFFTADECVVMQQRIGEIVAEMDVPLHCRTE--FSTQEDEQL 61
Query: 63 ----TDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSE 118
DYF S +KI FFFE+ F + GN P E SINK+GHALH DPVF+ + S
Sbjct: 62 QTQGNTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFRSITHSP 121
Query: 119 KTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDAT 177
K L+ SLG + PV +QSMYIFKQP GGEV PHQD +FL TEP GLW+A EDA
Sbjct: 122 KVQALVRSLGLQIPVVVQSMYIFKQPHFGGEVSPHQDATFLYTEPLGRVLGLWIATEDAM 181
Query: 178 IINGCLWAIPGSHKNGLVRRFIRGEE----GVYFDRPPPSYDQNDFVPIEVKAGSLVLIH 233
+ NGCLW IPGSH +G+ RR IR G F P++D N FVP+ V+ G LVLIH
Sbjct: 182 LENGCLWFIPGSHTSGVSRRMIRAPSDSGPGTSFLGSEPAWDNNLFVPLPVRRGGLVLIH 241
Query: 234 GDLIHQSFENQSSKSRHAYSLHVVETDGCRWSQENW 269
G+++H+S +N S SR AY+ H++E G WS NW
Sbjct: 242 GEVVHKSEQNLSDHSRQAYTFHLMEAAGTVWSPGNW 277
>sp|Q9NAM7|PHYD1_CAEEL Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog
OS=Caenorhabditis elegans GN=Y105C5B.9 PE=3 SV=1
Length = 288
Score = 229 bits (585), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 117/266 (43%), Positives = 171/266 (64%), Gaps = 11/266 (4%)
Query: 15 FNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCST--SSVFSTTNQQK-VTDDYFYESA 71
F G+VV+E+ +D+EI+ M+K + +++ D + SVFST ++ K D YF S+
Sbjct: 8 FERDGFVVVENVFNDQEIDEMKKSISKIVNDMDLAEHPKSVFSTYDEDKHAADSYFLNSS 67
Query: 72 EKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKR 131
+KI FFFEE A DG L PK+ ++NK+GH LH LDP F+K + + K N+ +GY+
Sbjct: 68 DKIRFFFEEGAVDKDGELTVPKDKALNKIGHGLHFLDPTFEKMTFNSKIQNIFKEIGYQE 127
Query: 132 PVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDATIINGCLWAIPGSH 190
P +QSMYIFKQP IGG V H D++FL +P TG+W+A+++A++ NGCL IPGSH
Sbjct: 128 PGVVQSMYIFKQPKIGGAVTDHVDSTFLRVDPIDHLTGVWIAIDEASVENGCLSFIPGSH 187
Query: 191 KN--GLVRRFIR-----GEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFEN 243
K+ RF+R G + F P+YDQ+ F + + GSL+LIHG ++H+S N
Sbjct: 188 KDTSSANYRFVRTHDTSGGALLKFIGTRPTYDQSKFQHVPISKGSLILIHGLVVHKSEAN 247
Query: 244 QSSKSRHAYSLHVVETDGCRWSQENW 269
S KSRHAY++HV+E +WS++NW
Sbjct: 248 TSEKSRHAYTIHVMERKNTKWSEQNW 273
>sp|P0C660|PHYD1_CAEBR Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog
OS=Caenorhabditis briggsae GN=CBG00325 PE=3 SV=1
Length = 288
Score = 224 bits (570), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 117/272 (43%), Positives = 169/272 (62%), Gaps = 11/272 (4%)
Query: 9 SDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCST--SSVFSTTNQQK-VTDD 65
SD F G+VV+E+ +D+EIE ++ + +++ + + SVFST ++ K D
Sbjct: 2 SDLRQNFERDGFVVIENVFNDQEIEEIKGAIGKIVEDMNLAEHPKSVFSTYDEDKHAADS 61
Query: 66 YFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLH 125
YF S++KI FFFEE A DG L PK+ ++NK+GH LH LDP FKK + + K +
Sbjct: 62 YFLNSSDKIRFFFEEGAVDKDGELTVPKDKALNKIGHGLHLLDPTFKKMTFNSKIQKIFQ 121
Query: 126 SLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDATIINGCLW 184
+GY+ P +QSMYIFKQP IGG V H D++FL P TG+W+A+++A++ NGCL
Sbjct: 122 GIGYQEPEVVQSMYIFKQPKIGGAVTDHVDSTFLRVNPIDHLTGVWIAIDEASVENGCLS 181
Query: 185 AIPGSHKNGLVR--RFIR-----GEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLI 237
IPGSHK+ RF+R G + F P+YDQ+ F + + GSL+LIHG ++
Sbjct: 182 FIPGSHKDTSTSDYRFVRTHDTTGGPLLKFIGTRPTYDQSKFQHVPISKGSLILIHGLVV 241
Query: 238 HQSFENQSSKSRHAYSLHVVETDGCRWSQENW 269
H+S N S KSRHAY++HV+E WS++NW
Sbjct: 242 HKSEANTSDKSRHAYTIHVMEKQNTEWSKDNW 273
>sp|Q54XH6|PHYD1_DICDI Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog
OS=Dictyostelium discoideum GN=phyhd1 PE=3 SV=1
Length = 281
Score = 223 bits (568), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/270 (42%), Positives = 170/270 (62%), Gaps = 8/270 (2%)
Query: 7 LNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDC-STSSVFSTTNQQKVTDD 65
L + + + G++++ +F + EEI+ +R +M L+D D ST S+F+T+ Q++ DD
Sbjct: 3 LTEEQVAQYKKDGFLIIRNFNTTEEIDIVRGEMKKLIDELDTPSTISIFTTSEQERKVDD 62
Query: 66 YFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLH 125
YF S +KI +FFE+ + +DG L PK+++ NKVGHALH+L+P F++FS S+K +L++
Sbjct: 63 YFLGSGDKIRYFFEKGSI-EDGKLIVPKDMAFNKVGHALHDLNPKFEEFSYSQKIHDLIY 121
Query: 126 SLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWA 185
SLG MYIFK IGGEV HQD++FL T P T +W A ED+TI NGCL
Sbjct: 122 SLGIYNKALSGIMYIFKNQKIGGEVDIHQDSTFLHTTPLTTHAIWFAFEDSTIENGCLRG 181
Query: 186 IPGSHKNGLVRRFI---RGEEGVYFDR--PPPSYDQNDFVPIEVKAGSLVLIHGDLIHQS 240
+PGSH G+ RRFI E G F + Y+++DFV +E K G ++L+ G ++H S
Sbjct: 182 LPGSHTEGITRRFITDPNSESGCSFIKLAEDKQYNKSDFVALECKKGDIILLDGSVVHYS 241
Query: 241 FENQSSKSRHAYSLHVVETD-GCRWSQENW 269
N S SRHAY+LH +E D G + +NW
Sbjct: 242 EPNTSPNSRHAYTLHFIEGDNGVIYENDNW 271
>sp|O62515|PAHX_CAEEL Probable phytanoyl-CoA dioxygenase OS=Caenorhabditis elegans
GN=ZK550.6 PE=3 SV=2
Length = 312
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 24/174 (13%)
Query: 108 DPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMY--IFKQPGIGGEVVP----HQDNSFLIT 161
DPV ++ + +++ L ++ +M+ + +P G++ HQD +
Sbjct: 91 DPVLFEYCKYPGVVDVVKDLIGNPKSNLMAMHTMLINKPPDNGKLTSRHPMHQDLQYFPF 150
Query: 162 EPS--TCTGLWLALEDATIINGCLWAIPGSHKNGLV-RRFIRGEEGVY--------FDRP 210
P+ C W A+E T NGCL +PG+HK L+ + + E GV +D
Sbjct: 151 RPADFICCA-WTAMEKITRANGCLVVVPGTHKGVLLPHEYPKWEGGVNKAYHGIQDYDTS 209
Query: 211 PPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVETDGCRW 264
P + +E++ G V H LIH S N++ R A S H D CR+
Sbjct: 210 TPR------IHVEMEPGDTVFFHPILIHGSGANRTEGFRKAISCHYANDDLCRY 257
>sp|O18778|PAHX_BOVIN Phytanoyl-CoA dioxygenase, peroxisomal OS=Bos taurus GN=PHYH PE=2
SV=2
Length = 337
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 110/278 (39%), Gaps = 47/278 (16%)
Query: 7 LNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSV---FSTTNQQKVT 63
L+ + F+ G++V+++ SD +I+ R + + + C S +T
Sbjct: 53 LSLEQRKFYEENGFLVIKNLVSDADIQRFRNEFERI-----CRKEVKPLGLSVMRDVTIT 107
Query: 64 DDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNL 123
+ S + +S + + F +D L + L P K+ N+
Sbjct: 108 KSEYVPSEKVVS---KVQDFQEDEELFRYCTL-------------PEILKYVECFTGPNI 151
Query: 124 LHSLGYKRPVDIQSMYIFKQPGIGGEVVPH---QDNSFLITEPS-TCTGLWLALEDATII 179
+ + +M I K P G + H QD + PS + W A+E
Sbjct: 152 M---------AMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSNSIVCAWTAMEHIDRN 202
Query: 180 NGCLWAIPGSHKNGL-VRRFIRGEEGV-YFDRPPPSYDQNDF-VPIEVKAGSLVLIHGDL 236
NGCL +PG+HK L + + E GV YD+N+ V + ++ G V H L
Sbjct: 203 NGCLVVLPGTHKGPLQPHDYPQWEGGVNIMFHGIQDYDKNNARVHLVMEKGDTVFFHPLL 262
Query: 237 IHQSFENQSSKSRHAYSLHVVETDGCRW------SQEN 268
IH S N+S R A S H + + C + SQEN
Sbjct: 263 IHGSGRNKSQGFRKAISCHFADAN-CHYIDVEGTSQEN 299
>sp|O14832|PAHX_HUMAN Phytanoyl-CoA dioxygenase, peroxisomal OS=Homo sapiens GN=PHYH PE=1
SV=1
Length = 338
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 14/147 (9%)
Query: 135 IQSMYIFKQPGIGGEVVPH---QDNSFLITEPS-TCTGLWLALEDATIINGCLWAIPGSH 190
+ +M I K P G + H QD + PS W A+E + NGCL +PG+H
Sbjct: 154 MHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTH 213
Query: 191 KNGLVRR-FIRGEEGV-YFDRPPPSYDQNDF-VPIEVKAGSLVLIHGDLIHQSFENQSSK 247
K L + + E GV Y++N V + ++ G V H LIH S +N++
Sbjct: 214 KGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQG 273
Query: 248 SRHAYSLHVVETDGCRW------SQEN 268
R A S H D C + SQEN
Sbjct: 274 FRKAISCHFASAD-CHYIDVKGTSQEN 299
>sp|O35386|PAHX_MOUSE Phytanoyl-CoA dioxygenase, peroxisomal OS=Mus musculus GN=Phyh PE=1
SV=1
Length = 338
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 101/261 (38%), Gaps = 34/261 (13%)
Query: 7 LNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDY 66
L + F+ G++V+++ SD++I+ R + + + + + + DY
Sbjct: 53 LTLEQRKFYEENGFLVIKNLVSDDDIQRFRAEFERICRE-EVKPPGIVIMRDVALAKQDY 111
Query: 67 FYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHS 126
S +S + + F +D L + + L P K+ N++
Sbjct: 112 M-PSDRMVS---KIQDFQEDEELFR-------------YCLLPEILKYVECFTGPNIM-- 152
Query: 127 LGYKRPVDIQSMYIFKQPGIGGEVVPH---QDNSFLITEPST-CTGLWLALEDATIINGC 182
+ M I K P +G + H QD + PS W A+E NGC
Sbjct: 153 -------ALHGMLINKPPDVGKKTSRHPLHQDLHYFPFRPSNLIVCAWTAMEHIDRNNGC 205
Query: 183 LWAIPGSHKNGL-VRRFIRGEEGV-YFDRPPPSYDQND-FVPIEVKAGSLVLIHGDLIHQ 239
L +PG+HK L + + E GV YD N V + ++ G V H LIH
Sbjct: 206 LVVLPGTHKGTLKPHDYPKWEGGVNKMYHGIQDYDPNSPRVHLVMEKGDTVFFHPLLIHG 265
Query: 240 SFENQSSKSRHAYSLHVVETD 260
S N++ R A S H +D
Sbjct: 266 SGRNKTQGFRKAISCHFGSSD 286
>sp|P57093|PAHX_RAT Phytanoyl-CoA dioxygenase, peroxisomal OS=Rattus norvegicus GN=Phyh
PE=1 SV=2
Length = 338
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 62/155 (40%), Gaps = 30/155 (19%)
Query: 135 IQSMYIFKQPGIGGEVVPH---QDNSFLITEPST-CTGLWLALEDATIINGCLWAIPGSH 190
+ +M I K P G + H QD F PS W A+E NGCL +PG+H
Sbjct: 154 MHTMLINKPPDSGKKTSRHPLHQDLHFFPFRPSNLIVCAWTAMEHIDRNNGCLVVLPGTH 213
Query: 191 KNGL-----------VRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQ 239
K L V + G + D P V + ++ G V H LIH
Sbjct: 214 KGPLKPHDYPKWEGGVNKMYHGIQDYDPDSP--------RVHLVMEKGDTVFFHPLLIHG 265
Query: 240 SFENQSSKSRHAYSLHVVETDGCRW------SQEN 268
S N++ R A S H +D C++ SQEN
Sbjct: 266 SGRNRTQGFRKAISCHYGSSD-CKYISVKGTSQEN 299
>sp|P67773|Y3657_MYCBO Uncharacterized protein Mb3657 OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb3657 PE=3 SV=1
Length = 291
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 17/94 (18%)
Query: 162 EPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVP 221
+P C L +AL D T NG +PGSH+ + +RP P Y + P
Sbjct: 141 QPLLCNAL-IALCDFTADNGATQVVPGSHR--------------WPERPSPPYPEGK--P 183
Query: 222 IEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLH 255
+E+ AG ++ +G L H + N++ R A +++
Sbjct: 184 VEINAGDALIWNGSLWHTAAANRTDAPRPALTIN 217
>sp|P67772|Y3633_MYCTU Uncharacterized protein Rv3633/MT3735 OS=Mycobacterium tuberculosis
GN=Rv3633 PE=3 SV=1
Length = 291
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 17/94 (18%)
Query: 162 EPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVP 221
+P C L +AL D T NG +PGSH+ + +RP P Y + P
Sbjct: 141 QPLLCNAL-IALCDFTADNGATQVVPGSHR--------------WPERPSPPYPEGK--P 183
Query: 222 IEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLH 255
+E+ AG ++ +G L H + N++ R A +++
Sbjct: 184 VEINAGDALIWNGSLWHTAAANRTDAPRPALTIN 217
>sp|Q94502|GANAB_DICDI Neutral alpha-glucosidase AB OS=Dictyostelium discoideum GN=modA
PE=3 SV=1
Length = 943
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 12/143 (8%)
Query: 129 YKRPVDIQSMYIFKQPGIGGEVVPH--QDNSFLITEPSTCTGLWLALEDATIINGCLWAI 186
+ P D+Q++ K + V PH +DN++ + +T G ++ +D +G W
Sbjct: 444 FPTPADMQNIIGAKHRKMVTIVDPHIKRDNNYYVHSEATSKGYYIKNKDGNDYDGWCW-- 501
Query: 187 PGSHK-----NGLVRRFIRGEEGV--YFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQ 239
PGS N +R++ + G Y P Y ND V G V +H D H
Sbjct: 502 PGSSSYLDFTNPEIRKWWATQFGYDKYKGSTPNLYIWNDMNEPSVFNGPEVSMHKDAKHH 561
Query: 240 S-FENQSSKSRHAYSLHVVETDG 261
FE++ + + Y H+ DG
Sbjct: 562 GGFEHRDVHNLYGYYYHMASADG 584
>sp|P67771|Y1539_MYCBO Uncharacterized protein Mb1539 OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb1539 PE=3 SV=1
Length = 273
Score = 38.1 bits (87), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 153 HQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPP 212
HQD +++ + A++ T G +PGSH+ ++P
Sbjct: 126 HQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQR--------------IEKPDH 171
Query: 213 SYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHA 251
+Y + VP++ AGSL + L H + N S K R A
Sbjct: 172 TYLARNAVPVQCAAGSLFVFDSTLWHAAGRNTSGKDRLA 210
>sp|P67770|Y1501_MYCTU Uncharacterized protein Rv1501/MT1550 OS=Mycobacterium tuberculosis
GN=Rv1501 PE=3 SV=1
Length = 273
Score = 38.1 bits (87), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 153 HQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPP 212
HQD +++ + A++ T G +PGSH+ ++P
Sbjct: 126 HQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQR--------------IEKPDH 171
Query: 213 SYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHA 251
+Y + VP++ AGSL + L H + N S K R A
Sbjct: 172 TYLARNAVPVQCAAGSLFVFDSTLWHAAGRNTSGKDRLA 210
>sp|B1IEY8|Y424_CLOBK UPF0371 protein CLD_0424 OS=Clostridium botulinum (strain Okra /
Type B1) GN=CLD_0424 PE=3 SV=1
Length = 502
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 80 EKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHS-LGYKRP-VDIQS 137
EK G++ K P ++ +N+VG + + D V K+ S+ E + YK+ VD ++
Sbjct: 265 EKITGEESVYKSPTDMGVNRVGFGIVD-DEVVKEASKQEIIRRAFKTACEYKKGYVDKET 323
Query: 138 MY----IFKQPGIGGE----VVPHQDNSFLITEPS----TCTGLWLALEDATIING 181
+ I ++ + E V+P ++ + + E + TCT + L LED TI+ G
Sbjct: 324 FHRAKLIMEEMNLKEEDRKVVIPAREYAAKLKERANKSETCTVVALELEDGTILTG 379
>sp|A7GA85|Y399_CLOBL UPF0371 protein CLI_0399 OS=Clostridium botulinum (strain Langeland
/ NCTC 10281 / Type F) GN=CLI_0399 PE=3 SV=1
Length = 502
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 80 EKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHS-LGYKRP-VDIQS 137
EK G++ K P ++ +N+VG + + D V K+ S+ E + YK+ VD ++
Sbjct: 265 EKITGEESVYKSPTDMGVNRVGFGIVD-DEVVKEASKQEIIRRAFKTACEYKKGYVDKET 323
Query: 138 MY----IFKQPGIGGE----VVPHQDNSFLITEPS----TCTGLWLALEDATIING 181
+ I ++ + E V+P ++ + + E + TCT + L LED TI+ G
Sbjct: 324 FHRAKLIMEEMNLKEEDRKVVIPAREYAAKLKERANKSETCTVVALELEDGTILTG 379
>sp|C3KZE8|Y384_CLOB6 UPF0371 protein CLJ_B0384 OS=Clostridium botulinum (strain 657 /
Type Ba4) GN=CLJ_B0384 PE=3 SV=1
Length = 502
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 80 EKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHS-LGYKRP-VDIQS 137
EK G++ K P ++ +N+VG + + D V K+ S+ E + YK+ VD ++
Sbjct: 265 EKITGEESVYKSPTDMGVNRVGFGIVD-DEVVKEASKQEIIRRAFKTACEYKKGYVDKET 323
Query: 138 MY----IFKQPGIGGE----VVPHQDNSFLITEPS----TCTGLWLALEDATIING 181
+ I ++ + E V+P ++ + + E + TCT + L LED TI+ G
Sbjct: 324 FHRAKLIMEEMNLKEEDRKVVIPAREYAAKLKERANKSETCTVVALELEDGTILTG 379
>sp|B1KUD0|Y3516_CLOBM UPF0371 protein CLK_3516 OS=Clostridium botulinum (strain Loch
Maree / Type A3) GN=CLK_3516 PE=3 SV=1
Length = 502
Score = 35.0 bits (79), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 80 EKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHS-LGYKRP-VDIQS 137
EK G++ K P ++ +N+VG + + D V K+ S+ E + YK+ VD ++
Sbjct: 265 EKITGEESVYKSPTDMGVNRVGFGIVD-DEVVKEASKQEIIRRAFKTACEYKKGYVDKET 323
Query: 138 MY----IFKQPGIGGE----VVPHQDNSFLITEPS----TCTGLWLALEDATIING 181
+ I ++ + E V+P ++ + + E + TCT + L LED TI+ G
Sbjct: 324 FHRAKLIMEEMNLKEEDRKVVIPAREYAAKLKERANKSETCTVVALELEDGTILTG 379
>sp|Q5WLG9|GLMM_BACSK Phosphoglucosamine mutase OS=Bacillus clausii (strain KSM-K16)
GN=glmM PE=3 SV=1
Length = 446
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 15/141 (10%)
Query: 10 DNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYE 69
+ + FF S G+ +L+S +EEIEA L+DG D + Q +DYF
Sbjct: 107 NGIKFFGSDGFKLLDS--QEEEIEA-------LIDGEDTMPRPIGGDVGQ---LNDYFEG 154
Query: 70 SAEKISFFFEEKAFGDDG---NLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHS 126
S + + F + G +G + + + H L +LD S +N+
Sbjct: 155 SQKYMQFLKQTVEGGFEGIHVAIDCANGAASSLATHVLADLDADISSMGSSPNGTNINAC 214
Query: 127 LGYKRPVDIQSMYIFKQPGIG 147
G P ++ + + KQ +G
Sbjct: 215 CGSTHPEELAKLVVEKQADVG 235
>sp|C1FRL0|Y396_CLOBJ UPF0371 protein CLM_0396 OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=CLM_0396 PE=3 SV=1
Length = 502
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 80 EKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHS-LGYKRP-VDIQS 137
EK G++ K P ++ +N+VG + + D + K+ S+ E + YK+ VD ++
Sbjct: 265 EKITGEESVYKSPTDMGVNRVGFGIVD-DEIVKEASKQEIIRRAFKTACEYKKGYVDKET 323
Query: 138 MY----IFKQPGIGGE----VVPHQDNSFLITEPS----TCTGLWLALEDATIING 181
+ I ++ + E V+P ++ + + E + TCT + L LED TI+ G
Sbjct: 324 FHRAKLIMEEMNLKEEDRKVVIPAREYAAKLKERANKSETCTVVALELEDGTILTG 379
>sp|A7FQY1|Y371_CLOB1 UPF0371 protein CLB_0371 OS=Clostridium botulinum (strain ATCC
19397 / Type A) GN=CLB_0371 PE=3 SV=1
Length = 502
Score = 34.3 bits (77), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 80 EKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHS-LGYKRP-VDIQS 137
EK G++ K P ++ +N+VG + + D V K+ S+ E + YK+ VD ++
Sbjct: 265 EKITGEESVYKSPTDMGVNRVGFGIVD-DEVVKEASKQEIIRRAFKTACEYKKGYVDKET 323
Query: 138 MY----IFKQPGIGGE----VVPHQDNSFLITEPS----TCTGLWLALEDATIING 181
+ I ++ + E V+P + + + E + TCT + L LED TI+ G
Sbjct: 324 FHRAKLIMEEMNLKEEDRKVVIPARKYAAKLKERANKSETCTVVALELEDGTILTG 379
>sp|B5FUB9|AAS_SALDC Bifunctional protein aas OS=Salmonella dublin (strain CT_02021853)
GN=aas PE=3 SV=1
Length = 719
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 15/132 (11%)
Query: 132 PVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWA-IPG-- 188
PV + ++ + +PG G ++P D L+ P G L L+ I+NG L PG
Sbjct: 518 PVVLINVPMAAKPGTVGRILPGMDAR-LLAVPGIENGGRLQLKGPNIMNGYLRVEKPGVL 576
Query: 189 ---SHKNGLVRRFIRGE--EGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFEN 243
S +N RGE G Y +D+N FV I+ +A I G+++
Sbjct: 577 EVPSAENA------RGETERGWYDTGDIVRFDENGFVQIQGRAKRFAKIAGEMVSLEMVE 630
Query: 244 QSSKSRHAYSLH 255
Q + A +H
Sbjct: 631 QLALGVSADKMH 642
>sp|O69060|HTXA_PSEST Probable alpha-ketoglutarate-dependent hypophosphite dioxygenase
OS=Pseudomonas stutzeri GN=htxA PE=3 SV=1
Length = 286
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 9/140 (6%)
Query: 116 RSEKTSNLL-HSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALE 174
RSEK +LL H LG + + + I +P G V HQD +F L + L+
Sbjct: 81 RSEKIVDLLRHFLGEN--IRLHNSKINFKPPSGAPVQWHQDWAFYPHTNDDFLTLGIFLD 138
Query: 175 DATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVK-----AGSL 229
+ + NG + +PGSHK G V E G + S P E + G++
Sbjct: 139 ETSEKNGAMACLPGSHK-GKVYDHRNVETGEFCHAISRSNWDEALDPTEGELLTGPVGTV 197
Query: 230 VLIHGDLIHQSFENQSSKSR 249
L H +H S N S+ R
Sbjct: 198 TLHHVRTLHGSGPNHSTIRR 217
>sp|P59017|B2L13_MOUSE Bcl-2-like protein 13 OS=Mus musculus GN=Bcl2l13 PE=1 SV=2
Length = 434
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 29 DEEIEAMRKQMDHLLD--GFDCSTSSVFSTTNQQKVTDDYFYESAEKIS 75
+EE++ + K++ GFDC TS VFS N + +D E++S
Sbjct: 61 EEELKTLDKEVSEAFTSTGFDCHTSPVFSPANPESSIEDCLAHLGERVS 109
>sp|Q9DC40|TELO2_MOUSE Telomere length regulation protein TEL2 homolog OS=Mus musculus
GN=Telo2 PE=1 SV=2
Length = 840
Score = 32.7 bits (73), Expect = 2.9, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 3 LAGN-LNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSV 53
L GN L DNL F Q Y L E ++A++ ++ L DG DCS S V
Sbjct: 166 LLGNCLQRDNLTQFFPQNYFPL---LGQEVVQALKAVVNFLQDGLDCSVSFV 214
>sp|A8MJ53|Y2302_ALKOO UPF0371 protein Clos_2302 OS=Alkaliphilus oremlandii (strain
OhILAs) GN=Clos_2302 PE=3 SV=1
Length = 502
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 20/126 (15%)
Query: 80 EKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHS-LGYKRP-VDIQ- 136
EK G++ K P ++ +N+VG + + D + K+ S+ E + YK+ VD +
Sbjct: 265 EKITGEESVFKSPTDMGVNRVGFGIID-DEIIKEASKQEIIRRYFKTGCEYKKGHVDKET 323
Query: 137 ---SMYIFKQPGIGGE----VVPHQDNSFLITEPS----TCTGLWLALEDATIINGCLWA 185
S I +Q + E V+P ++ S + E S C + + L D T+I G
Sbjct: 324 FERSKMIMEQLDLKLEDRKVVLPAREKSAKLREVSNKNEACPAMAIELSDGTMITG---- 379
Query: 186 IPGSHK 191
GSH+
Sbjct: 380 -KGSHE 384
>sp|Q8Z406|AAS_SALTI Bifunctional protein aas OS=Salmonella typhi GN=aas PE=3 SV=1
Length = 719
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 15/132 (11%)
Query: 132 PVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWA-IPG-- 188
PV ++ + +PG G ++P D L+ P G L L+ I+NG L PG
Sbjct: 518 PVVSINVPMAAKPGTVGRILPGMDAR-LLAVPGIENGGRLQLKGPNIMNGYLRVEKPGVL 576
Query: 189 ---SHKNGLVRRFIRGE--EGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFEN 243
S +N RGE G Y +D+N FV I+ +A I G+++
Sbjct: 577 EVPSAENA------RGETERGWYDTGDIVRFDENGFVQIQGRAKRFAKIAGEMVSLEMVE 630
Query: 244 QSSKSRHAYSLH 255
Q + A +H
Sbjct: 631 QLALGVSAEKMH 642
>sp|C0PXJ8|AAS_SALPC Bifunctional protein aas OS=Salmonella paratyphi C (strain RKS4594)
GN=aas PE=3 SV=1
Length = 719
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 132 PVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWA-IPG-- 188
PV ++ + +PG G ++P D L+ P G L L+ I+NG L PG
Sbjct: 518 PVVSINVPMAAKPGTVGRILPGMDAR-LLAVPGIENGGRLQLKGPNIMNGYLRVEKPGVL 576
Query: 189 ---SHKNGLVRRFIRGE--EGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFEN 243
S +N RGE G Y +D+N FV I+ +A I G+++
Sbjct: 577 EVPSAENA------RGETERGWYDTGDIVRFDENGFVQIQGRAKRFAKIAGEMVSLEMVE 630
Query: 244 QSSKSRHAYSLH--VVETDGCR 263
Q + A +H +++D +
Sbjct: 631 QLALGVSAEKMHATAIKSDASK 652
>sp|Q57KA7|AAS_SALCH Bifunctional protein aas OS=Salmonella choleraesuis (strain SC-B67)
GN=aas PE=3 SV=1
Length = 719
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 132 PVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWA-IPG-- 188
PV ++ + +PG G ++P D L+ P G L L+ I+NG L PG
Sbjct: 518 PVVSINVPMAAKPGTVGRILPGMDAR-LLAVPGIENGGRLQLKGPNIMNGYLRVEKPGVL 576
Query: 189 ---SHKNGLVRRFIRGE--EGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFEN 243
S +N RGE G Y +D+N FV I+ +A I G+++
Sbjct: 577 EVPSAENA------RGETERGWYDTGDIVRFDENGFVQIQGRAKRFAKIAGEMVSLEMVE 630
Query: 244 QSSKSRHAYSLH--VVETDGCR 263
Q + A +H +++D +
Sbjct: 631 QLALGVSAEKMHATAIKSDASK 652
>sp|B5RDY6|AAS_SALG2 Bifunctional protein aas OS=Salmonella gallinarum (strain 287/91 /
NCTC 13346) GN=aas PE=3 SV=1
Length = 719
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 132 PVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWA-IPG-- 188
PV ++ + +PG G ++P D L+ P G L L+ I+NG L PG
Sbjct: 518 PVVSINVPMAAKPGTVGRILPGMDAR-LLAVPGIENGGRLQLKGPNIMNGYLRVEKPGVL 576
Query: 189 ---SHKNGLVRRFIRGE--EGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFEN 243
S +N RGE G Y +D+N FV I+ +A I G+++
Sbjct: 577 EVPSAENA------RGETERGWYDTGDIVRFDENGFVQIQGRAKRFAKIAGEMVSLEMVE 630
Query: 244 QSSKSRHAYSLH--VVETDGCR 263
Q + A +H +++D +
Sbjct: 631 QLALGVSADKMHATAIKSDASK 652
>sp|B5BFH6|AAS_SALPK Bifunctional protein aas OS=Salmonella paratyphi A (strain
AKU_12601) GN=aas PE=3 SV=1
Length = 719
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 132 PVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWA-IPG-- 188
PV ++ + +PG G ++P D L+ P G L L+ I+NG L PG
Sbjct: 518 PVVSINVPMAAKPGTVGRILPGMDAR-LLAVPGIENGGRLQLKGPNIMNGYLRVEKPGVL 576
Query: 189 ---SHKNGLVRRFIRGE--EGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFEN 243
S +N RGE G Y +D+N FV I+ +A I G+++
Sbjct: 577 EVPSAENA------RGETERGWYDTGDIVRFDENGFVQIQGRAKRFAKIAGEMVSLEMVE 630
Query: 244 QSSKSRHAYSLH--VVETDGCR 263
Q + A +H +++D +
Sbjct: 631 QLALGVSADKMHATAIKSDASK 652
>sp|Q5PEN7|AAS_SALPA Bifunctional protein aas OS=Salmonella paratyphi A (strain ATCC
9150 / SARB42) GN=aas PE=3 SV=1
Length = 719
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 132 PVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWA-IPG-- 188
PV ++ + +PG G ++P D L+ P G L L+ I+NG L PG
Sbjct: 518 PVVSINVPMAAKPGTVGRILPGMDAR-LLAVPGIENGGRLQLKGPNIMNGYLRVEKPGVL 576
Query: 189 ---SHKNGLVRRFIRGE--EGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFEN 243
S +N RGE G Y +D+N FV I+ +A I G+++
Sbjct: 577 EVPSAENA------RGETERGWYDTGDIVRFDENGFVQIQGRAKRFAKIAGEMVSLEMVE 630
Query: 244 QSSKSRHAYSLH--VVETDGCR 263
Q + A +H +++D +
Sbjct: 631 QLALGVSADKMHATAIKSDASK 652
>sp|A9N3H8|AAS_SALPB Bifunctional protein aas OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=aas PE=3 SV=1
Length = 719
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 132 PVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWA-IPG-- 188
PV ++ + +PG G ++P D L+ P G L L+ I+NG L PG
Sbjct: 518 PVVSINVPMAAKPGTVGRILPGMDAR-LLAVPGIENGGRLQLKGPNIMNGYLRVEKPGVL 576
Query: 189 ---SHKNGLVRRFIRGE--EGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFEN 243
S +N RGE G Y +D+N FV I+ +A I G+++
Sbjct: 577 EVPSAENA------RGETERGWYDTGDIVRFDENGFVQIQGRAKRFAKIAGEMVSLEMVE 630
Query: 244 QSSKSRHAYSLH--VVETDGCR 263
Q + A +H +++D +
Sbjct: 631 QLALGVSADKMHATAIKSDASK 652
>sp|B5F4V4|AAS_SALA4 Bifunctional protein aas OS=Salmonella agona (strain SL483) GN=aas
PE=3 SV=1
Length = 719
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 132 PVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWA-IPG-- 188
PV ++ + +PG G ++P D L+ P G L L+ I+NG L PG
Sbjct: 518 PVVSINVPMAAKPGTVGRILPGMDAR-LLAVPGIENGGRLQLKGPNIMNGYLRVEKPGVL 576
Query: 189 ---SHKNGLVRRFIRGE--EGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFEN 243
S +N RGE G Y +D+N FV I+ +A I G+++
Sbjct: 577 EVPSAENA------RGETERGWYDTGDIVRFDENGFVQIQGRAKRFAKIAGEMVSLEMVE 630
Query: 244 QSSKSRHAYSLH--VVETDGCR 263
Q + A +H +++D +
Sbjct: 631 QLALGVSADKMHATAIKSDASK 652
>sp|B4TGR5|AAS_SALHS Bifunctional protein aas OS=Salmonella heidelberg (strain SL476)
GN=aas PE=3 SV=1
Length = 719
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 132 PVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWA-IPG-- 188
PV ++ + +PG G ++P D L+ P G L L+ I+NG L PG
Sbjct: 518 PVVSINVPMAAKPGTVGRILPGMDAR-LLAVPGIENGGRLQLKGPNIMNGYLRVEKPGVL 576
Query: 189 ---SHKNGLVRRFIRGE--EGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFEN 243
S +N RGE G Y +D+N FV I+ +A I G+++
Sbjct: 577 EVPSAENA------RGETERGWYDTGDIVRFDENGFVQIQGRAKRFAKIAGEMVSLEMVE 630
Query: 244 QSSKSRHAYSLH--VVETDGCR 263
Q + A +H +++D +
Sbjct: 631 QLALGVSADKMHATAIKSDASK 652
>sp|B5QWU2|AAS_SALEP Bifunctional protein aas OS=Salmonella enteritidis PT4 (strain
P125109) GN=aas PE=3 SV=1
Length = 719
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 132 PVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWA-IPG-- 188
PV ++ + +PG G ++P D L+ P G L L+ I+NG L PG
Sbjct: 518 PVVSINVPMAAKPGTVGRILPGMDAR-LLAVPGIENGGRLQLKGPNIMNGYLRVEKPGVL 576
Query: 189 ---SHKNGLVRRFIRGE--EGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFEN 243
S +N RGE G Y +D+N FV I+ +A I G+++
Sbjct: 577 EVPSAENA------RGETERGWYDTGDIVRFDENGFVQIQGRAKRFAKIAGEMVSLEMVE 630
Query: 244 QSSKSRHAYSLH--VVETDGCR 263
Q + A +H +++D +
Sbjct: 631 QLALGVSADKMHATAIKSDASK 652
>sp|B4TUM9|AAS_SALSV Bifunctional protein aas OS=Salmonella schwarzengrund (strain
CVM19633) GN=aas PE=3 SV=1
Length = 719
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 132 PVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWA-IPG-- 188
PV ++ + +PG G ++P D L+ P G L L+ I+NG L PG
Sbjct: 518 PVVSINVPMAAKPGTVGRILPGMDAR-LLAVPGIENGGRLQLKGPNIMNGYLRVEKPGVL 576
Query: 189 ---SHKNGLVRRFIRGE--EGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFEN 243
S +N RGE G Y +D+N FV I+ +A I G+++
Sbjct: 577 EVPSAENA------RGETERGWYDTGDIVRFDENGFVQIQGRAKRFAKIAGEMVSLEMVE 630
Query: 244 QSSKSRHAYSLH--VVETDGCR 263
Q + A +H +++D +
Sbjct: 631 QLALGVSADKMHATAIKSDASK 652
>sp|Q9VW97|LSDA_DROME Possible lysine-specific histone demethylase 1 OS=Drosophila
melanogaster GN=Su(var)3-3 PE=1 SV=1
Length = 890
Score = 31.2 bits (69), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 2/116 (1%)
Query: 22 VLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEK 81
LE S +E++ M K+ H+ + T + + + D E ++ + K
Sbjct: 397 ALEWIISMQEMQVMHKRGQHMQEIIATQTKIIEQRRRLKTLRDTIGKLKNEHLAMINQRK 456
Query: 82 AFGDDGNLKQP-KELSINKVGHALHELDPVFKKFSRSEKTS-NLLHSLGYKRPVDI 135
G DG+LK +E +I + E F EK LH L RP D+
Sbjct: 457 PKGTDGDLKYCYQEFNIRNTQIKMEETISTFHDLHAEEKQMLAKLHELEQNRPSDV 512
>sp|Q3IRE7|SYT_NATPD Threonine--tRNA ligase OS=Natronomonas pharaonis (strain DSM 2160 /
ATCC 35678) GN=thrS PE=3 SV=1
Length = 642
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 14 FFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAE 72
F G++ +E A ++E+ + Q++ +LD FD +T ++ V D +E A+
Sbjct: 379 FTIDDGHLFVERDAIEQEVNVIMDQIEEVLDTFDLDYEVALATRPEKSVGSDEIWEQAQ 437
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,855,472
Number of Sequences: 539616
Number of extensions: 4532000
Number of successful extensions: 10015
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 9969
Number of HSP's gapped (non-prelim): 57
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)