Query 024285
Match_columns 269
No_of_seqs 109 out of 1207
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:26:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3290 Peroxisomal phytanoyl- 100.0 6.8E-41 1.5E-45 272.1 10.9 264 5-268 2-269 (286)
2 TIGR02408 ectoine_ThpD ectoine 100.0 5.3E-39 1.2E-43 276.5 20.1 223 3-262 13-253 (277)
3 TIGR01762 chlorin-enz chlorina 100.0 1.2E-37 2.5E-42 268.4 22.3 223 6-269 2-259 (288)
4 PF05721 PhyH: Phytanoyl-CoA d 100.0 3.8E-31 8.1E-36 217.9 15.2 198 15-251 1-211 (211)
5 COG5285 Protein involved in bi 99.9 9E-27 1.9E-31 194.1 11.1 217 7-260 11-233 (299)
6 PF07350 DUF1479: Protein of u 99.1 6.1E-10 1.3E-14 99.1 10.5 212 5-259 61-360 (416)
7 smart00702 P4Hc Prolyl 4-hydro 98.4 6.9E-05 1.5E-09 60.3 17.1 81 148-256 94-177 (178)
8 PRK05467 Fe(II)-dependent oxyg 98.3 2.4E-05 5.2E-10 65.0 14.2 81 148-257 91-177 (226)
9 PLN00052 prolyl 4-hydroxylase; 98.1 0.00016 3.5E-09 63.0 15.1 99 147-259 142-253 (310)
10 PF13640 2OG-FeII_Oxy_3: 2OG-F 97.6 6.4E-05 1.4E-09 54.4 3.4 87 148-256 10-99 (100)
11 PF13759 2OG-FeII_Oxy_5: Putat 97.4 0.0008 1.7E-08 48.9 7.0 79 166-254 22-100 (101)
12 TIGR02466 conserved hypothetic 97.3 0.0073 1.6E-07 49.5 12.8 132 107-257 62-199 (201)
13 COG3128 PiuC Uncharacterized i 97.3 0.0043 9.4E-08 49.2 10.3 38 219-257 143-180 (229)
14 PF13532 2OG-FeII_Oxy_2: 2OG-F 95.5 0.42 9.1E-06 38.6 12.1 39 217-255 145-194 (194)
15 PRK15401 alpha-ketoglutarate-d 94.5 2.4 5.2E-05 35.1 17.7 38 219-256 166-212 (213)
16 PHA02813 hypothetical protein; 92.8 1.4 2.9E-05 39.0 10.0 70 143-246 102-171 (354)
17 PHA02869 C4L/C10L-like gene fa 89.5 2.8 6.1E-05 37.7 8.8 77 149-257 115-194 (418)
18 PF12851 Tet_JBP: Oxygenase do 85.9 1.5 3.4E-05 34.9 4.7 81 147-256 84-169 (171)
19 KOG3710 EGL-Nine (EGLN) protei 85.1 6.7 0.00015 32.6 8.0 37 9-45 44-80 (280)
20 TIGR02409 carnitine_bodg gamma 84.5 2 4.3E-05 38.6 5.3 44 217-260 311-355 (366)
21 KOG1591 Prolyl 4-hydroxylase a 83.6 17 0.00037 31.6 10.4 29 18-46 97-125 (289)
22 COG4340 Uncharacterized protei 82.7 20 0.00043 28.9 9.4 104 108-245 87-201 (226)
23 PF03171 2OG-FeII_Oxy: 2OG-Fe( 79.6 3.6 7.9E-05 29.0 4.2 81 145-258 13-98 (98)
24 PF08856 DUF1826: Protein of u 78.7 2.8 6.2E-05 34.2 3.7 35 220-254 151-195 (196)
25 KOG3290 Peroxisomal phytanoyl- 77.9 2.2 4.8E-05 36.1 2.9 42 5-46 30-71 (286)
26 PRK09553 tauD taurine dioxygen 77.4 4.4 9.5E-05 34.9 4.8 42 217-258 231-273 (277)
27 PF13661 2OG-FeII_Oxy_4: 2OG-F 76.4 5.7 0.00012 26.4 4.2 41 146-186 20-63 (70)
28 TIGR00568 alkb DNA alkylation 75.7 28 0.00062 27.6 8.6 23 23-45 1-23 (169)
29 TIGR02410 carnitine_TMLD trime 69.0 7.6 0.00017 34.9 4.4 41 217-260 310-351 (362)
30 cd00250 CAS_like Clavaminic ac 67.0 11 0.00024 31.9 4.9 38 217-254 217-257 (262)
31 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 65.1 23 0.0005 28.8 6.1 38 219-256 152-195 (195)
32 COG2175 TauD Probable taurine 63.8 13 0.00028 32.3 4.6 43 217-260 236-279 (286)
33 PF05118 Asp_Arg_Hydrox: Aspar 62.5 9.3 0.0002 30.1 3.3 37 221-258 125-161 (163)
34 PF03079 ARD: ARD/ARD' family; 62.0 10 0.00022 29.8 3.4 44 217-264 112-155 (157)
35 KOG3844 Predicted component of 61.3 1.3E+02 0.0028 27.4 12.5 185 8-259 23-218 (476)
36 PRK11354 kil FtsZ inhibitor pr 58.8 11 0.00025 24.9 2.6 28 218-245 10-37 (73)
37 PRK02963 carbon starvation ind 57.9 27 0.00058 30.7 5.5 43 217-259 264-311 (316)
38 PF02668 TauD: Taurine catabol 55.5 14 0.00031 30.8 3.5 37 217-253 218-256 (258)
39 PF07883 Cupin_2: Cupin domain 55.5 7.5 0.00016 25.2 1.4 26 221-247 38-63 (71)
40 KOG3888 Gamma-butyrobetaine,2- 54.9 20 0.00043 32.0 4.2 42 217-259 345-389 (407)
41 PF02311 AraC_binding: AraC-li 54.6 9.4 0.0002 27.9 2.0 26 220-245 41-66 (136)
42 PF06047 SynMuv_product: Ras-i 51.8 10 0.00023 27.1 1.7 19 6-24 34-52 (104)
43 PF14226 DIOX_N: non-haem diox 51.1 41 0.0009 24.2 5.0 37 8-44 17-54 (116)
44 smart00839 ELFV_dehydrog Gluta 48.9 44 0.00096 24.0 4.7 26 2-27 31-56 (102)
45 KOG2107 Uncharacterized conser 47.9 21 0.00045 28.2 2.9 30 217-246 113-142 (179)
46 PRK09943 DNA-binding transcrip 47.5 30 0.00064 27.7 4.0 32 220-252 146-178 (185)
47 PRK10838 spr outer membrane li 46.4 13 0.00029 30.1 1.7 12 222-233 127-138 (190)
48 PRK03606 ureidoglycolate hydro 46.3 59 0.0013 25.7 5.3 39 217-255 104-142 (162)
49 PLN03176 flavanone-3-hydroxyla 44.4 60 0.0013 24.1 4.9 37 9-45 58-95 (120)
50 PRK10204 hypothetical protein; 43.0 65 0.0014 20.0 3.9 39 4-42 1-52 (55)
51 PLN02904 oxidoreductase 42.1 1.3E+02 0.0029 26.9 7.7 75 150-266 227-313 (357)
52 PRK13395 ureidoglycolate hydro 40.9 79 0.0017 25.2 5.3 45 218-262 106-150 (171)
53 TIGR00218 manA mannose-6-phosp 39.9 34 0.00073 29.9 3.4 21 220-240 151-171 (302)
54 PLN02912 oxidoreductase, 2OG-F 39.9 1.6E+02 0.0035 26.3 7.8 36 9-44 60-96 (348)
55 COG1917 Uncharacterized conser 39.0 75 0.0016 23.6 4.9 27 221-247 83-109 (131)
56 PLN02254 gibberellin 3-beta-di 38.7 1.4E+02 0.003 26.9 7.2 83 143-266 222-316 (358)
57 PTZ00273 oxidase reductase; Pr 38.7 1.6E+02 0.0035 25.8 7.5 36 10-45 28-64 (320)
58 PLN02276 gibberellin 20-oxidas 38.2 1.7E+02 0.0037 26.2 7.8 81 144-266 219-311 (361)
59 PF10637 Ofd1_CTDD: Oxoglutara 36.6 59 0.0013 27.9 4.3 33 10-42 22-54 (266)
60 COG2731 EbgC Beta-galactosidas 35.2 68 0.0015 25.1 4.1 35 218-252 110-146 (154)
61 COG1482 ManA Phosphomannose is 34.3 50 0.0011 29.0 3.5 25 219-243 157-181 (312)
62 PRK15457 ethanolamine utilizat 33.4 74 0.0016 26.7 4.2 24 219-242 192-216 (233)
63 PLN02156 gibberellin 2-beta-di 32.6 2.1E+02 0.0046 25.4 7.3 76 150-266 199-286 (335)
64 PRK10371 DNA-binding transcrip 32.4 74 0.0016 27.6 4.4 23 220-242 64-86 (302)
65 PLN02485 oxidoreductase 32.3 2.1E+02 0.0046 25.2 7.3 84 143-266 200-295 (329)
66 PF04115 Ureidogly_hydro: Urei 32.0 65 0.0014 25.4 3.6 40 217-256 107-146 (165)
67 PF02668 TauD: Taurine catabol 31.7 70 0.0015 26.5 4.0 31 9-39 27-58 (258)
68 PF13101 DUF3945: Protein of u 31.3 31 0.00068 22.1 1.4 25 5-29 33-57 (59)
69 PF15628 RRM_DME: RRM in Demet 31.0 40 0.00086 24.2 1.9 22 5-26 64-85 (103)
70 PF09859 Oxygenase-NA: Oxygena 30.7 2.8E+02 0.006 22.1 9.6 107 119-258 49-172 (173)
71 PF08111 Pea-VEAacid: Pea-VEAa 30.7 14 0.00031 16.2 -0.2 10 184-193 2-11 (15)
72 PRK13290 ectC L-ectoine syntha 30.1 67 0.0014 24.1 3.2 24 220-243 75-98 (125)
73 TIGR02219 phage_NlpC_fam putat 30.0 30 0.00066 26.2 1.3 11 223-233 76-86 (134)
74 PLN02947 oxidoreductase 29.9 3E+02 0.0065 24.9 7.9 83 143-266 237-330 (374)
75 PF12419 DUF3670: SNF2 Helicas 28.3 97 0.0021 23.7 3.9 38 5-42 82-124 (141)
76 PF12720 DUF3807: Protein of u 28.2 37 0.00081 27.1 1.6 29 2-42 45-73 (172)
77 PF08920 SF3b1: Splicing facto 27.9 40 0.00086 26.1 1.6 37 3-42 83-120 (144)
78 PRK11171 hypothetical protein; 27.8 66 0.0014 27.5 3.2 35 219-253 222-256 (266)
79 smart00835 Cupin_1 Cupin. This 27.8 75 0.0016 24.2 3.3 25 218-242 73-97 (146)
80 PF03668 ATP_bind_2: P-loop AT 27.2 1.2E+02 0.0027 26.3 4.7 33 8-41 14-46 (284)
81 PF04074 DUF386: Domain of unk 27.1 62 0.0014 25.0 2.7 36 217-252 110-147 (153)
82 PRK07114 keto-hydroxyglutarate 26.9 96 0.0021 25.9 3.9 34 5-38 98-131 (222)
83 PRK06015 keto-hydroxyglutarate 26.4 99 0.0022 25.3 3.8 34 5-38 83-116 (201)
84 PF11548 Receptor_IA-2: Protei 25.6 1.2E+02 0.0027 21.4 3.6 29 16-44 2-31 (91)
85 COG2140 Thermophilic glucose-6 24.3 1.7E+02 0.0037 24.1 4.7 47 217-265 123-169 (209)
86 PRK02963 carbon starvation ind 24.2 96 0.0021 27.3 3.5 35 150-186 151-185 (316)
87 TIGR02409 carnitine_bodg gamma 23.8 1.1E+02 0.0024 27.3 4.1 40 150-192 187-226 (366)
88 PRK10572 DNA-binding transcrip 23.5 1.3E+02 0.0029 25.6 4.4 23 220-242 67-89 (290)
89 PF13621 Cupin_8: Cupin-like d 23.5 1.1E+02 0.0023 25.2 3.7 42 217-258 206-247 (251)
90 PRK10202 ebgC cryptic beta-D-g 22.6 1.3E+02 0.0029 23.2 3.7 21 221-241 107-127 (149)
91 PF02373 JmjC: JmjC domain, hy 22.5 59 0.0013 23.2 1.7 24 218-241 79-102 (114)
92 PF00877 NLPC_P60: NlpC/P60 fa 22.5 49 0.0011 23.5 1.3 16 219-234 47-62 (105)
93 PF08643 DUF1776: Fungal famil 22.5 97 0.0021 27.1 3.2 37 4-40 13-49 (299)
94 PF10832 DUF2559: Protein of u 22.2 1.7E+02 0.0037 18.3 3.3 37 6-42 2-51 (54)
95 PLN02704 flavonol synthase 22.1 1.7E+02 0.0038 25.8 4.9 36 9-44 58-94 (335)
96 PLN03002 oxidoreductase, 2OG-F 21.8 1.8E+02 0.004 25.7 4.9 37 9-45 30-67 (332)
97 PRK04190 glucose-6-phosphate i 21.7 1.3E+02 0.0028 24.4 3.6 28 219-247 119-146 (191)
98 TIGR03214 ura-cupin putative a 21.6 1E+02 0.0022 26.3 3.1 34 219-253 217-251 (260)
99 cd01076 NAD_bind_1_Glu_DH NAD( 21.5 66 0.0014 26.8 2.0 27 2-28 135-161 (227)
100 TIGR01182 eda Entner-Doudoroff 21.5 1.4E+02 0.0031 24.4 3.9 33 5-37 87-119 (204)
101 PRK14053 methyltransferase; Pr 21.4 91 0.002 25.1 2.6 38 6-45 110-147 (194)
102 PLN02912 oxidoreductase, 2OG-F 20.6 1.8E+02 0.004 25.9 4.7 42 221-263 253-299 (348)
103 PF06897 DUF1269: Protein of u 20.5 1.8E+02 0.0039 21.0 3.8 34 8-41 68-101 (102)
104 PF11369 DUF3160: Protein of u 20.5 75 0.0016 30.9 2.3 22 7-28 1-22 (630)
105 COG3435 Gentisate 1,2-dioxygen 20.4 64 0.0014 28.2 1.7 24 220-243 131-154 (351)
106 PTZ00273 oxidase reductase; Pr 20.4 2E+02 0.0044 25.2 4.9 42 221-264 235-281 (320)
107 PF02839 CBM_5_12: Carbohydrat 20.3 88 0.0019 17.9 1.8 20 223-242 9-28 (41)
108 TIGR03404 bicupin_oxalic bicup 20.1 86 0.0019 28.3 2.5 28 222-250 112-139 (367)
109 PLN02403 aminocyclopropanecarb 20.1 2E+02 0.0044 25.1 4.8 37 9-45 21-58 (303)
No 1
>KOG3290 consensus Peroxisomal phytanoyl-CoA hydroxylase [Lipid transport and metabolism]
Probab=100.00 E-value=6.8e-41 Score=272.15 Aligned_cols=264 Identities=43% Similarity=0.681 Sum_probs=228.2
Q ss_pred CCCCHHHHHhhhhccEEEecCCCCHHHHHHHHHHHHHHHccCCCCCceeeecCcccccccchhcccccccceeeeccccC
Q 024285 5 GNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFG 84 (269)
Q Consensus 5 ~~lt~~~~~~f~~~Gyvvl~~~l~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 84 (269)
..|++.++..|+++||+++++|++.++++.|..++.+++++.+-.-+.+|.+.++.+..++||++|.+.+++|+|..++.
T Consensus 2 ~~l~~~~~~~f~~~Gflv~e~f~~~~e~~~L~~~~~~~~~~~~~~l~~~fst~~e~q~~~nyF~~s~dKi~~ffe~~~v~ 81 (286)
T KOG3290|consen 2 GCLSPSQLVKFQTDGFLVIEGFLSAEEIDVLSQEQREFYNENDFLLHKIFSTQDEAQGFENYFLESCDKIRFFFEKGAVM 81 (286)
T ss_pred CCCChhHHhhcccCceEEEeccccHHHHHHHHHHHHHHHHhCCceeeeccccHHHHhhHHHHHHHhcceeeecccccccc
Confidence 46899999999999999999999999999999999999998876555788888777888999999999999999999999
Q ss_pred CCCCcccccccccccccccccccChHHHhhhcChhHHHHHHHhCCCCceeeccceeeecCCCCCCCCcccCCCCCccCCC
Q 024285 85 DDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPS 164 (269)
Q Consensus 85 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~l~~~~~~l~g~~~~~~~~~~~~~~p~~~~~~~wH~D~~~~~~~~~ 164 (269)
.+|.+..+...++|+++|.++..+|.|..+-.+.++..+...++-..+.+.++++++|+|+.|+.+..|||..|.+.+|.
T Consensus 82 kdg~l~kp~~k~~nK~gh~lhd~~p~~~~fty~~k~~~l~~~l~~~~Pvv~qsmyi~K~P~iGg~vt~HqD~~~~p~~P~ 161 (286)
T KOG3290|consen 82 KDGSLAKPKEKSINKIGHKLHDLDPDFKLFTYSSKVQVLAVVLGLQGPVVAQSMYIFKPPDIGGEVTPHQDLTFFPWDPC 161 (286)
T ss_pred cccccccCccccHHHhhhhhhhcCcchhheeeeccccceeeeeccCCceeeeEEEEecCCCCCCccCCcccceecccCch
Confidence 99999999999999999999999999998887777777777764333677788888899999999999999999999988
Q ss_pred -ceeEEeEeeeeccCCCceEEEEcCCCCCCCccce-eeCCCCcc--ccCCCCCCCCCCeeeeeecCccEEEEeCccccCC
Q 024285 165 -TCTGLWLALEDATIINGCLWAIPGSHKNGLVRRF-IRGEEGVY--FDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQS 240 (269)
Q Consensus 165 -~~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~v~~~~~~Gdvvl~~~~~~H~~ 240 (269)
.++.+|+++.+++..||||.++||||+.....+. ...+++++ |....+-++......+.|++||.++||+.++|+|
T Consensus 162 d~~~~~W~Ame~~t~~NGCL~~iPGshk~~l~~~~yp~~sgg~~~~~~~~~~~~~q~~~~~v~mekg~tv~~h~~lvh~S 241 (286)
T KOG3290|consen 162 DSCVGAWTAMEDITLVNGCLQVIPGSHKGPLLFHRYPDWSGGVNMAYIGIQDYYPQSPRGHVEMEKGDTVFFHPLLVHGS 241 (286)
T ss_pred hhhhhhhhhhhhhhhcCCceEeccccccCcceeeccCCcccccccceeecccCCccCCccceeecCCcEEEEeeeeeecC
Confidence 8889999999999999999999999999754332 22344443 3322233344567788899999999999999999
Q ss_pred CCCCCCCCceEEEEEEEeCCCcccCCCC
Q 024285 241 FENQSSKSRHAYSLHVVETDGCRWSQEN 268 (269)
Q Consensus 241 ~~n~s~~~R~~~~~~~~~~~~~~~~~~~ 268 (269)
++|+|+..|.++..+|...+.++|...+
T Consensus 242 ~~NrSe~~R~a~s~h~~~~~~~ky~~~~ 269 (286)
T KOG3290|consen 242 GANRSEGFRKAISCHVAETDNTKYSEVN 269 (286)
T ss_pred CCCcccccccccccceeecCCceeecCC
Confidence 9999999999999999999878987765
No 2
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=100.00 E-value=5.3e-39 Score=276.46 Aligned_cols=223 Identities=22% Similarity=0.276 Sum_probs=165.4
Q ss_pred CCCCCCHHHHHhhhhccEEEecCCCCHHHHHHHHHHHHHHHccCCCCC--ceeeecCcccccccchhcccccccceeeec
Q 024285 3 LAGNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCST--SSVFSTTNQQKVTDDYFYESAEKISFFFEE 80 (269)
Q Consensus 3 ~~~~lt~~~~~~f~~~Gyvvl~~~l~~~~v~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (269)
....||++|+++|+++|||+|+++|++++|++|++++++++....... ...+ +
T Consensus 13 ~~~~Lt~eqi~~f~~dGyvvl~~vls~eev~~lr~~i~~~~~~~~~~~~~~~~~------------------------~- 67 (277)
T TIGR02408 13 AAGPLSAKQLQSYERDGFLLLENLFSDDEVAALLAEVERMTRDPAIVRDEEAIT------------------------E- 67 (277)
T ss_pred CCCCCCHHHHHHHHHCCEEECcccCCHHHHHHHHHHHHHHHhcccccCCCccee------------------------c-
Confidence 356799999999999999999999999999999999999886521100 0000 0
Q ss_pred cccCCCCCcccccccccccccccccccChHHHhhhcChhHHHHHHHhCCCCceeeccceeeecCCCCCCCCcccCCCCCc
Q 024285 81 KAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLI 160 (269)
Q Consensus 81 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~l~~~~~~l~g~~~~~~~~~~~~~~p~~~~~~~wH~D~~~~~ 160 (269)
..+. .+..+ ..++..++.|.+++.+|+|.+++++|+|.+++++++.++.|++..+..++||||..||+
T Consensus 68 ----~~~~-------~~r~~-~~~~~~~~~~~~l~~~p~l~~~~~~LlG~~~~l~~~~l~~kp~~~g~~~~WHQD~~~w~ 135 (277)
T TIGR02408 68 ----PGSN-------AVRSI-FEVHVLSPILARLVRDPRVANAARQILGSDVYVHQSRINMKPGFKGTGFYWHSDFETWH 135 (277)
T ss_pred ----CCCC-------ceEEE-ecccccCHHHHHHHcChHHHHHHHHHcCCCeEEEeeeeeecCCCCCCCccCCcCCcccc
Confidence 0000 01011 12346689999999999999999999999988888888888776666789999999987
Q ss_pred cC---C-CceeEEeEeeeeccCCCceEEEEcCCCCCCCccceeeCCC-------CccccCCCCC-----CCCCCeeeeee
Q 024285 161 TE---P-STCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEE-------GVYFDRPPPS-----YDQNDFVPIEV 224 (269)
Q Consensus 161 ~~---~-~~~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~~~~~~~-------~~~~~~~~~~-----~~~~~~v~~~~ 224 (269)
.. + ...|++||+|+|++++||||+||||||++........... +.....+++. .+....+.+.+
T Consensus 136 ~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~ 215 (277)
T TIGR02408 136 AEDGMPSMRAVSCSIALTDNNETNGPLMLVPGSHRTFISCVGETPRDNYKQSLKKQEYGVPDPVSLTKLADQGGISTFTG 215 (277)
T ss_pred ccCCCCCcCeEEEEEEcccCCCCCCCEEEecCCCCCcccCCccccchhhhhhhhhhhcCCCCHHHHHHHHHhCCceeecc
Confidence 54 2 2689999999999999999999999999842110000000 0000111110 12235678899
Q ss_pred cCccEEEEeCccccCCCCCCCCCCceEEEEEEEeCCCc
Q 024285 225 KAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVETDGC 262 (269)
Q Consensus 225 ~~Gdvvl~~~~~~H~~~~n~s~~~R~~~~~~~~~~~~~ 262 (269)
+|||++|||++++|+|++|.|+.+|++++++|.+.++.
T Consensus 216 ~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~~~~ 253 (277)
T TIGR02408 216 KAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSVENA 253 (277)
T ss_pred CCceEEEEccccccCCCCCCCCCcceeEEEEEecCCCc
Confidence 99999999999999999999999999999999987644
No 3
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=100.00 E-value=1.2e-37 Score=268.38 Aligned_cols=223 Identities=20% Similarity=0.290 Sum_probs=164.1
Q ss_pred CCCHHHHHhhhhccEEEecCCCCHHHHHHHHHHHHHHHccCCCCCceeeecCcccccccchhcccccccceeeeccccCC
Q 024285 6 NLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFGD 85 (269)
Q Consensus 6 ~lt~~~~~~f~~~Gyvvl~~~l~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 85 (269)
.||++|+++|+++|||+++++|++++|++|+++++..+..... ..+..
T Consensus 2 ~Lt~eqi~~y~e~Gyv~~~~~~s~eei~~L~~~~~~~l~~~~~---~~~~~----------------------------- 49 (288)
T TIGR01762 2 ALTAEERQSFEKNGFIGPFTLYSPEEMKETWKRIRLRLLDRSA---APYQD----------------------------- 49 (288)
T ss_pred CCCHHHHHHHHhCCEEeCcCCCCHHHHHHHHHHHHHHhhcccc---ccccC-----------------------------
Confidence 5899999999999999999999999999999999754322110 00100
Q ss_pred CCCcccccccccccccccccccChHHHhhhcChhHHHHHHHhCCCCceeeccceeeecCCCCCCCCcccCCCCCccCC--
Q 024285 86 DGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-- 163 (269)
Q Consensus 86 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~l~~~~~~l~g~~~~~~~~~~~~~~p~~~~~~~wH~D~~~~~~~~-- 163 (269)
.+.. ....+ ..+..++.|.+++.+|+|++++++|+|.+++++++.++.|+|+.+. ++||||..||..+.
T Consensus 50 ~~~~---~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~llG~~v~l~~~~~~~K~pg~~~-~~wHQD~~y~~~~~~~ 120 (288)
T TIGR01762 50 LGGT---NIANY-----DRHLDDDFLASHICRPEICHRVESILGPNVLCWRTEFFPKYPGDEG-TDWHQADTFANASGKP 120 (288)
T ss_pred CCCc---eeEee-----eecccCHHHHHHhcCHHHHHHHHHHhCCcEEeeeceeeeeCCCCCC-CCCCccCcccccCCcc
Confidence 0000 00001 1234578999999999999999999999999999999999998654 79999998876431
Q ss_pred ----------CceeEEeEeeeeccCCCceEEEEcCCCCCCCccc----eeeCC-------CC--c-----ccc--CCCCC
Q 024285 164 ----------STCTGLWLALEDATIINGCLWAIPGSHKNGLVRR----FIRGE-------EG--V-----YFD--RPPPS 213 (269)
Q Consensus 164 ----------~~~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~----~~~~~-------~~--~-----~~~--~~~~~ 213 (269)
...+++||+|+|++.+||||.|+||||++..... ++..+ ++ . .+. .++..
T Consensus 121 ~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~viPGSH~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~l~~d~~ 200 (288)
T TIGR01762 121 QLVWPENEEFGGTITVWTAFTDATIENGCMQFIPGTHNSMNYDETRRMTFEPDANNSVVKGGVRRGFFGYDYRQLQIDEN 200 (288)
T ss_pred cccccccCCCCCeEEEEEEcccCCcccCCEEEECCCCCCCCCCcccccccCccccccccccccccccccccchhhccccc
Confidence 2689999999999999999999999999743211 00000 00 0 000 01111
Q ss_pred --CCCCCeeeeeecCccEEEEeCccccCCCCCCCCC-CceEEEEEEEeCCCcccCCCCC
Q 024285 214 --YDQNDFVPIEVKAGSLVLIHGDLIHQSFENQSSK-SRHAYSLHVVETDGCRWSQENW 269 (269)
Q Consensus 214 --~~~~~~v~~~~~~Gdvvl~~~~~~H~~~~n~s~~-~R~~~~~~~~~~~~~~~~~~~~ 269 (269)
.+..+.|.++++|||++|||++++|+|++|.|+. .|+++.++|++.+-..|+..+|
T Consensus 201 ~~~~~~~~v~~~lkaGd~~~f~~~t~HgS~~N~S~~~~R~~~~~ry~~~~~~~~~~~~~ 259 (288)
T TIGR01762 201 WKPDEASAVPMQMKAGQFIIFWSTLMHASYPNSGESQMRMGFASRYVPSFVHVYPDSDH 259 (288)
T ss_pred CCccccceeeeeeCCceEEEECCCceecCCCCCCCCceEEEEEEEEcCCCceEcCCCCc
Confidence 1223578999999999999999999999999975 7999999999997556666554
No 4
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=99.97 E-value=3.8e-31 Score=217.95 Aligned_cols=198 Identities=35% Similarity=0.503 Sum_probs=135.9
Q ss_pred hhhccEEEecCCCCHHHHHHHHHHHHHHHccC-CCC-CceeeecCcccccccchhcccccccceeeeccccCCCCCcccc
Q 024285 15 FNSQGYVVLESFASDEEIEAMRKQMDHLLDGF-DCS-TSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFGDDGNLKQP 92 (269)
Q Consensus 15 f~~~Gyvvl~~~l~~~~v~~l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~G~~~~~ 92 (269)
|+++|||+|+++|++++|++++++++++.... ... ....+.. .... +.
T Consensus 1 f~~~Gyvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~---~~---- 50 (211)
T PF05721_consen 1 FRRDGYVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFFD-----------------------ESFF---GD---- 50 (211)
T ss_dssp HHHHSEEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEES-----------------------TSCC---CT----
T ss_pred CcCCcEEEECCcCCHHHHHHHHHHHHHHHhhhhccccccccccc-----------------------cccc---cc----
Confidence 89999999999999999999999999973332 111 1111110 0000 00
Q ss_pred cccccccccccccccChHHHhhhcCh-hHHHHHHHhCCCCcee---eccce--eeecCCCCCCC-CcccCCCCCccCC-C
Q 024285 93 KELSINKVGHALHELDPVFKKFSRSE-KTSNLLHSLGYKRPVD---IQSMY--IFKQPGIGGEV-VPHQDNSFLITEP-S 164 (269)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~p-~l~~~~~~l~g~~~~~---~~~~~--~~~~p~~~~~~-~wH~D~~~~~~~~-~ 164 (269)
. ......++.+.+++.++ .+.+++++++|.+... +.+.+ +.++|+.+... +||||..|+..+| .
T Consensus 51 ----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~~~~~ 122 (211)
T PF05721_consen 51 ----Y----TEQLAKSPNFYDLFLHPPRILDLVRALLGSDVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHTDPPE 122 (211)
T ss_dssp ----C----CCCGCCCHHHHHHHHTHHHHHHHHHHHHTSSEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTEESSS
T ss_pred ----c----ccccccchhhHHHHhhHHHHHHHHHHhhCCcchhhhhhHHHHHhhhhccccCCCCCCCCCCCcccccCCcc
Confidence 0 00114578889999998 9999999998887665 56666 77888766554 9999999987654 6
Q ss_pred ceeEEeEeeeeccCCCceEEEEcCCCCCCCccceeeCCCCccccCC---CCCCCCCCeeeeeecCccEEEEeCccccCCC
Q 024285 165 TCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRP---PPSYDQNDFVPIEVKAGSLVLIHGDLIHQSF 241 (269)
Q Consensus 165 ~~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~Gdvvl~~~~~~H~~~ 241 (269)
..+++||+|+|++++||||+|+||||+++............ .... .........+.+.++|||+||||++++|+|+
T Consensus 123 ~~~~~wi~L~d~~~~~G~~~v~pGSH~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~~~~~H~s~ 201 (211)
T PF05721_consen 123 NQLTVWIALDDITPENGPLEVVPGSHKWGVEPHEERFPEED-FPEEDDEESDEDEDEWVPVPMKAGDVLFFHSRLIHGSG 201 (211)
T ss_dssp CEEEEEEESS-BBTTCTCEEEETTGCCSCCEEECCCCCCCC-CCCCHHHHHHHHCSGCEEE-BSTTEEEEEETTSEEEEE
T ss_pred ceEEEEEeeccCCcccCceEeecCCcCCCcccccccccccc-cccccccccccccCceEEeecCCCeEEEEcCCccccCC
Confidence 89999999999999999999999999997543110000000 0000 0001235778999999999999999999999
Q ss_pred CCCCCCCceE
Q 024285 242 ENQSSKSRHA 251 (269)
Q Consensus 242 ~n~s~~~R~~ 251 (269)
+|.|+.+|++
T Consensus 202 ~N~s~~~R~a 211 (211)
T PF05721_consen 202 PNTSDDPRRA 211 (211)
T ss_dssp -B-SSSTEEE
T ss_pred CCCCcCcCCC
Confidence 9999999985
No 5
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=9e-27 Score=194.05 Aligned_cols=217 Identities=23% Similarity=0.303 Sum_probs=138.4
Q ss_pred CCHHHHHhhhhccEEEecCCCC--HHHHHHHHHHHHH-HHccCCCCCceeeecCcccccccchhcccccccceeeecccc
Q 024285 7 LNSDNLNFFNSQGYVVLESFAS--DEEIEAMRKQMDH-LLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAF 83 (269)
Q Consensus 7 lt~~~~~~f~~~Gyvvl~~~l~--~~~v~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 83 (269)
+-++.++.+++.||+|++++++ .+-+..++..+.. ...+.. +.+... ... . +..+.
T Consensus 11 ~~~q~~~~~~~~Gy~Vve~i~d~~~~~la~~r~af~~r~~~e~~----~~~~~~--t~~--------a-------~r~a~ 69 (299)
T COG5285 11 SYEQIQDAIDEFGYTVVEDVLDTSADSLAAFRAAFYNRVESELG----TEINKS--TTV--------A-------ERLAR 69 (299)
T ss_pred hHHHHHHHHhhhhhhhHHhHhhhhhhHHHHHHHHhhccchhhhc----cccccc--cch--------h-------hhhcc
Confidence 4467888999999999999999 7888888888883 322221 112100 000 0 00011
Q ss_pred CCCCCcc-cccccccccccccccccChHHHhhhcChhHHHHHHHhC-CCCceeeccceeeecCCCCCCCCcccCCCCCcc
Q 024285 84 GDDGNLK-QPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLG-YKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLIT 161 (269)
Q Consensus 84 ~~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~p~l~~~~~~l~-g~~~~~~~~~~~~~~p~~~~~~~wH~D~~~~~~ 161 (269)
++.|.+. ..-...+..+-. +..+++. .+...++|..+++.+. ..+..++ .+.....||. .++.||||++++..
T Consensus 70 ~g~~~~~r~~nd~~~~~~~~-~~r~~~~--~~~a~~~i~~~~~~~~~~~~~v~~-~~~~~~~p~~-~~t~~HqD~~~~~~ 144 (299)
T COG5285 70 NGRGVVDRVDNDRRRIDFTK-LCRKSPE--ALPAAPKILAVTRTLLLRHGHVLW-KMPGFQKPGA-VATRWHQDYPLVSP 144 (299)
T ss_pred CCCcchhhhcCccccccHHH-Hhccchh--hhhhhHHHHHHHHHHhccCCeEEE-ecCCCCCCcc-cccccccccccccC
Confidence 1111110 000000000000 0011111 1344556777777663 3333333 3332233332 23799999988877
Q ss_pred CCCceeEEeEeeeeccCCCceEEEEcCCCCCCCccceeeCCCCccccCCC-CCCCCCCeeeeeecCccEEEEeCccccCC
Q 024285 162 EPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPP-PSYDQNDFVPIEVKAGSLVLIHGDLIHQS 240 (269)
Q Consensus 162 ~~~~~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~Gdvvl~~~~~~H~~ 240 (269)
.+..+|++||+|+|++.+||++.||||||++.....+ ++ +.|.+...+++.|+|||++|||+.+||++
T Consensus 145 ~~~~lV~~wiAl~d~~~dnGat~vvPgSH~~~~~~~r-----------~d~~~y~~~~~~pv~lekGDallF~~~L~HaA 213 (299)
T COG5285 145 GYPALVNAWIALCDFTEDNGATLVVPGSHKWDVIPER-----------PDHETYLERNAVPVELEKGDALLFNGSLWHAA 213 (299)
T ss_pred CccceEEEEEeccccccccCceEEEecccccccCCCC-----------CCccchhhhcceeeeecCCCEEEEcchhhhhh
Confidence 7779999999999999999999999999999754322 11 13455668999999999999999999999
Q ss_pred CCCCCCCCceEEEEEEEeCC
Q 024285 241 FENQSSKSRHAYSLHVVETD 260 (269)
Q Consensus 241 ~~n~s~~~R~~~~~~~~~~~ 260 (269)
+.|+|...|.+++++|..+.
T Consensus 214 ~aNrT~~~R~A~~~~~~~~~ 233 (299)
T COG5285 214 GANRTSADRVALTLQFTVSF 233 (299)
T ss_pred hcCCCCcccceEEEEEeecc
Confidence 99999999999999999874
No 6
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=99.10 E-value=6.1e-10 Score=99.08 Aligned_cols=212 Identities=22% Similarity=0.291 Sum_probs=105.3
Q ss_pred CCCCHHHHHhhhhccEEEecCCCCHHHHHHHHHHHHHHHccCCCCCceeeecCcccccccchhcccccccceeeeccccC
Q 024285 5 GNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFG 84 (269)
Q Consensus 5 ~~lt~~~~~~f~~~Gyvvl~~~l~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 84 (269)
..+++++++.+++.|++||+|+|+++++.++.+++.+.++.-.. |.. | .+
T Consensus 61 ~~~~~~~~~~ir~rG~~VIR~Vvp~~ea~~w~~e~~~Y~~~n~~-----~~~----------~-----------p~---- 110 (416)
T PF07350_consen 61 GGVSEEFLAEIRRRGCVVIRGVVPREEALAWKQELKEYLKANPD-----FKG----------F-----------PP---- 110 (416)
T ss_dssp T---HHHHHHHHHHSEEEECTSS-HHHHHHHHHHHHHHHHHT-------TTT----------S-----------SS----
T ss_pred CCCCHHHHHHHHhcCEEEEeCCCCHHHHHHHHHHHHHHHHhCcc-----cCC----------C-----------CC----
Confidence 45789999999999999999999999999999999999876421 110 0 00
Q ss_pred CCCCcccccccccccccccccccChHHHhhhcChhHHHHHHHhCC---C-Cce---------eeccceeeecCCCC-CCC
Q 024285 85 DDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGY---K-RPV---------DIQSMYIFKQPGIG-GEV 150 (269)
Q Consensus 85 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~l~~~~~~l~g---~-~~~---------~~~~~~~~~~p~~~-~~~ 150 (269)
+. +. +..+ --+|.=.+.-.||.|+.+-+.|++ . +.. .+-+.+.+++||.. ...
T Consensus 111 --~~---p~---~y~l-----YWS~aQv~AR~HPn~l~~q~~L~~lW~~~~~~~~~~~~~pl~YaDRlRiR~Pg~~~~~L 177 (416)
T PF07350_consen 111 --DD---PQ---IYEL-----YWSPAQVKARSHPNMLAAQRFLNSLWHSEDPDAPIDLDTPLSYADRLRIRPPGDASFGL 177 (416)
T ss_dssp --------C---CE---------BHHHHHHHCSHHHHHHHHHHHTTSB-ETTCESSEEEEE------EEE--TT--B--E
T ss_pred --CC---Cc---EEEe-----ecCHHHHHHhcCHHHHHHHHHHHHhcccCCCCCCcCCCCCcchhhheeecCCCCCCCCC
Confidence 00 00 0000 013455557789999988887742 1 111 11245677889865 456
Q ss_pred CcccCCCC--------------------Cc-cC-----------------C-----CceeEEeEeeeeccCCCceEEEEc
Q 024285 151 VPHQDNSF--------------------LI-TE-----------------P-----STCTGLWLALEDATIINGCLWAIP 187 (269)
Q Consensus 151 ~wH~D~~~--------------------~~-~~-----------------~-----~~~v~~~i~L~d~~~~~G~l~vip 187 (269)
+.|.|..- |. .| + .++.+.|++|+++.+..|.|.|+|
T Consensus 178 gpHvDgGSvERWed~~Y~~vY~~If~G~WE~yDPwd~~~R~~a~~dly~~~g~CS~FR~FQGWlaLS~~~p~eGtL~v~P 257 (416)
T PF07350_consen 178 GPHVDGGSVERWEDPGYRGVYRHIFEGRWEDYDPWDASHRLDATSDLYNGPGACSVFRTFQGWLALSDTGPGEGTLRVLP 257 (416)
T ss_dssp EEEE-S-STHHHH-HHHHHHTHHHHTS-GGG--TTB-TTGGG------TT-----S--SEEEEEESS-B-TTSS-EEE-S
T ss_pred CCcCCCChHHhcCCHhHHHHHHHHhCCChhccCCCCCCCccccchhccCCCCCCceeeccchhhccccCCCCCCeEEEec
Confidence 88999862 10 01 1 157899999999999999999999
Q ss_pred CCCCCCCc---cceeeCCC-------------Ccccc----------CCC--CCCC-CCCeeee-eecCccEEEEeCccc
Q 024285 188 GSHKNGLV---RRFIRGEE-------------GVYFD----------RPP--PSYD-QNDFVPI-EVKAGSLVLIHGDLI 237 (269)
Q Consensus 188 GSH~~~~~---~~~~~~~~-------------~~~~~----------~~~--~~~~-~~~~v~~-~~~~Gdvvl~~~~~~ 237 (269)
--+....+ +.|+.... ...|- .+. +.+. ....|.+ .++|||.|+||..++
T Consensus 258 ~~~~atAY~lLRPfF~~~~~~~~~~~~~~~~~~~~~~Ga~pg~~q~~~~~~HPhL~L~~~mv~iP~v~PGD~V~WHcD~i 337 (416)
T PF07350_consen 258 LLKLATAYFLLRPFFDPVPSPSESPDYEDDPQTSIFPGAVPGRAQELSPKWHPHLRLEKTMVSIPDVEPGDYVFWHCDLI 337 (416)
T ss_dssp -CC-HHHHHHHGGGSTTS--------------TT--TT--TTS-EE--TTT-HH--HHTT-EE---B-TT-EEEEETT--
T ss_pred chHHHHHHHHhhhhcCCccccccccccccccCCCCCCCcCCCCCccCCcccCCchhhhcccccCCCCCCCCeEEEeCCcc
Confidence 97743321 22322210 00110 000 0111 1234444 499999999999999
Q ss_pred cCCCCCCC-CCCceEEEEEEEeC
Q 024285 238 HQSFENQS-SKSRHAYSLHVVET 259 (269)
Q Consensus 238 H~~~~n~s-~~~R~~~~~~~~~~ 259 (269)
|+..+... .....++++-.++.
T Consensus 338 H~Vd~~h~g~~~ssV~Yipa~Pl 360 (416)
T PF07350_consen 338 HAVDPEHNGKGDSSVMYIPACPL 360 (416)
T ss_dssp EEE--BSS-SS---EEE--B-EE
T ss_pred ccccccCCCCCCCCeeEecCCCC
Confidence 99998654 45777777666554
No 7
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=98.35 E-value=6.9e-05 Score=60.27 Aligned_cols=81 Identities=21% Similarity=0.120 Sum_probs=56.5
Q ss_pred CCCCcccCCCCCccCCCceeEEeEeeeeccCCCceEEEEcCCCCCCCccceeeCCCCccccCCCCCCCCCCeeeeeecCc
Q 024285 148 GEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAG 227 (269)
Q Consensus 148 ~~~~wH~D~~~~~~~~~~~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G 227 (269)
....+|.|.........+.+++.+||.|. .++|.+.+..... .....+.-++|
T Consensus 94 ~~~~~H~D~~~~~~~~~r~~T~~~yLn~~-~~GG~~~f~~~~~--------------------------~~~~~v~P~~G 146 (178)
T smart00702 94 GHYGPHVDNFEDDENGDRIATFLLYLNDV-EEGGELVFPGLGL--------------------------MVCATVKPKKG 146 (178)
T ss_pred CcccCcCCCCCCCCCCCeEEEEEEEeccC-CcCceEEecCCCC--------------------------ccceEEeCCCC
Confidence 45689999875322224789999999974 5566665543211 11235666899
Q ss_pred cEEEEeC---ccccCCCCCCCCCCceEEEEEE
Q 024285 228 SLVLIHG---DLIHQSFENQSSKSRHAYSLHV 256 (269)
Q Consensus 228 dvvl~~~---~~~H~~~~n~s~~~R~~~~~~~ 256 (269)
++|+|.. .++|++.+..+ ..|+++...|
T Consensus 147 ~~v~f~~~~~~~~H~v~pv~~-G~r~~~~~W~ 177 (178)
T smart00702 147 DLLFFPSGRGRSLHGVCPVTR-GSRWAITGWI 177 (178)
T ss_pred cEEEEeCCCCCccccCCccee-CCEEEEEEEE
Confidence 9999997 59999998776 5788887765
No 8
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=98.33 E-value=2.4e-05 Score=65.04 Aligned_cols=81 Identities=21% Similarity=0.053 Sum_probs=57.4
Q ss_pred CCCCcccCCCCCccC--C---CceeEEeEeeeeccC-CCceEEEEcCCCCCCCccceeeCCCCccccCCCCCCCCCCeee
Q 024285 148 GEVVPHQDNSFLITE--P---STCTGLWLALEDATI-INGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVP 221 (269)
Q Consensus 148 ~~~~wH~D~~~~~~~--~---~~~v~~~i~L~d~~~-~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (269)
..+++|.|..+.... . .+.+++.++|+|... ++|.|.|-.. .....
T Consensus 91 ~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~----------------------------~g~~~ 142 (226)
T PRK05467 91 MSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDT----------------------------YGEHR 142 (226)
T ss_pred CccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecC----------------------------CCcEE
Confidence 457999999865321 1 246889999998853 6776654211 01234
Q ss_pred eeecCccEEEEeCccccCCCCCCCCCCceEEEEEEE
Q 024285 222 IEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVV 257 (269)
Q Consensus 222 ~~~~~Gdvvl~~~~~~H~~~~n~s~~~R~~~~~~~~ 257 (269)
+..++|++|+|.+.++|++.|-+. ..|+++.+.+.
T Consensus 143 Vkp~aG~~vlfps~~lH~v~pVt~-G~R~~~~~Wi~ 177 (226)
T PRK05467 143 VKLPAGDLVLYPSTSLHRVTPVTR-GVRVASFFWIQ 177 (226)
T ss_pred EecCCCeEEEECCCCceeeeeccC-ccEEEEEecHH
Confidence 677899999999999999998654 56888877554
No 9
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=98.11 E-value=0.00016 Score=63.03 Aligned_cols=99 Identities=13% Similarity=0.067 Sum_probs=62.2
Q ss_pred CCCCCcccCCCCCcc----CCCceeEEeEeeeeccCCCceEEEEcCCCCCCCccceeeCCCCccccCCCCCCCCCCeeee
Q 024285 147 GGEVVPHQDNSFLIT----EPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPI 222 (269)
Q Consensus 147 ~~~~~wH~D~~~~~~----~~~~~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 222 (269)
+.....|.|+..-.. ...+..|+.+||+|+. ++|.+.| |....+...+. + ..+. + .....+.+
T Consensus 142 Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~-~GGeT~F-P~~~~~~~~~~-----~-~~~s----~-c~~~gl~V 208 (310)
T PLN00052 142 GQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVD-KGGETVF-PNAEGWENQPK-----D-DTFS----E-CAHKGLAV 208 (310)
T ss_pred CCCCCCCCCccccccccccCCceeEEEEEEeccCC-CCCceec-CCccccccccc-----c-cchh----h-hhcCCeEe
Confidence 445789999754211 1247899999999984 5665544 65532211110 0 0110 0 11245778
Q ss_pred eecCccEEEEeC---------ccccCCCCCCCCCCceEEEEEEEeC
Q 024285 223 EVKAGSLVLIHG---------DLIHQSFENQSSKSRHAYSLHVVET 259 (269)
Q Consensus 223 ~~~~Gdvvl~~~---------~~~H~~~~n~s~~~R~~~~~~~~~~ 259 (269)
.-++|++|||.. +++|++.|-..+ .++++...+...
T Consensus 209 kPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G-~Kw~atkWi~~~ 253 (310)
T PLN00052 209 KPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEG-EKWSAPKWIHIR 253 (310)
T ss_pred ccCcceEEEEeccCCCCCCCcccccCCCeeecC-eEEEEEEeeecc
Confidence 889999999987 689999997754 577777666654
No 10
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=97.58 E-value=6.4e-05 Score=54.37 Aligned_cols=87 Identities=26% Similarity=0.360 Sum_probs=55.5
Q ss_pred CCCCcccCCCCCccCCCceeEEeEeeeecc--CCCceEEEEcCCCCCCCccceeeCCCCccccCCCCCCCCCCeeeeeec
Q 024285 148 GEVVPHQDNSFLITEPSTCTGLWLALEDAT--IINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVK 225 (269)
Q Consensus 148 ~~~~wH~D~~~~~~~~~~~v~~~i~L~d~~--~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 225 (269)
....||.|..+ .+...+++.++|.+.. .++|.|++.+.. ....... .+.... + ..+
T Consensus 10 ~~~~~H~D~~~---~~~~~~t~llyL~~~~~~~~GG~l~~~~~~-~~~~~~~---------------~~~~~~-~--~p~ 67 (100)
T PF13640_consen 10 GFFGPHTDNSY---DPHRRVTLLLYLNDPEWEFEGGELEFYPSK-DSDDVSR---------------EVEDFD-I--VPK 67 (100)
T ss_dssp EEEEEEESSSC---CCSEEEEEEEESS-CS-HCEE--EEETTTS--TSSTCE---------------EEGGGS-E--E-B
T ss_pred CEEeeeECCCC---CCcceEEEEEEECCCCcccCCCEEEEeccc-cCCCcce---------------EEEecc-c--cCC
Confidence 44799999965 3457899999999776 567778887764 2100000 001011 2 299
Q ss_pred CccEEEEeC-ccccCCCCCCCCCCceEEEEEE
Q 024285 226 AGSLVLIHG-DLIHQSFENQSSKSRHAYSLHV 256 (269)
Q Consensus 226 ~Gdvvl~~~-~~~H~~~~n~s~~~R~~~~~~~ 256 (269)
+|++|+|.+ .++|++.+......|+++...|
T Consensus 68 ~g~~v~F~~~~~~H~v~~v~~~~~R~~l~~~~ 99 (100)
T PF13640_consen 68 PGRLVIFPSDNSLHGVTPVGEGGRRYSLTFWF 99 (100)
T ss_dssp TTEEEEEESCTCEEEEEEE-EESEEEEEEEEE
T ss_pred CCEEEEEeCCCCeecCcccCCCCCEEEEEEEE
Confidence 999999999 9999999984456788777665
No 11
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=97.39 E-value=0.0008 Score=48.86 Aligned_cols=79 Identities=18% Similarity=0.049 Sum_probs=41.0
Q ss_pred eeEEeEeeeeccCCCceEEEEcCCCCCCCccceeeCCCCccccCCCCCCCCCCeeeeeecCccEEEEeCccccCCCCCCC
Q 024285 166 CTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQS 245 (269)
Q Consensus 166 ~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gdvvl~~~~~~H~~~~n~s 245 (269)
.++.-+|| +++++.|.+.+............... . . ..........+..++||+|||-+++.|+..+|.+
T Consensus 22 ~~SgVyYv-~~p~~~~~l~f~~~~~~~~~~~~~~~-------~-~-~~~~~~~~~~~~p~~G~lvlFPs~l~H~v~p~~~ 91 (101)
T PF13759_consen 22 WLSGVYYV-QVPEGSGPLRFHDPRGSFSFGAPFDN-------Y-D-QNDLNSPYYIVEPEEGDLVLFPSWLWHGVPPNNS 91 (101)
T ss_dssp SEEEEEEC-E--TTS-SEEEE-TTCCCGTTS-----------T-T-TTCCC-SEEEE---TTEEEEEETTSEEEE----S
T ss_pred CEEEEEEE-ECCCCCCceeeeCCCccceecccccc-------c-c-cCcccCceEEeCCCCCEEEEeCCCCEEeccCcCC
Confidence 45554555 46667788888755432211111000 0 0 0112256778999999999999999999999999
Q ss_pred CCCceEEEE
Q 024285 246 SKSRHAYSL 254 (269)
Q Consensus 246 ~~~R~~~~~ 254 (269)
+..|.++.+
T Consensus 92 ~~~Risisf 100 (101)
T PF13759_consen 92 DEERISISF 100 (101)
T ss_dssp SS-EEEEEE
T ss_pred CCCEEEEEc
Confidence 999998875
No 12
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=97.34 E-value=0.0073 Score=49.47 Aligned_cols=132 Identities=18% Similarity=0.201 Sum_probs=74.8
Q ss_pred cChHHHhhh--cChhHHHHHHHhCCC-Cc--eeeccceeeecCCCCCCCCcccCCCCCccCCCceeEEeEeeeeccCCCc
Q 024285 107 LDPVFKKFS--RSEKTSNLLHSLGYK-RP--VDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIING 181 (269)
Q Consensus 107 ~~~~~~~l~--~~p~l~~~~~~l~g~-~~--~~~~~~~~~~~p~~~~~~~wH~D~~~~~~~~~~~v~~~i~L~d~~~~~G 181 (269)
..|.|..|. ..+.+.+.+++++.. +. ..+......+.+. |+....|.- |...++.-+||+ ++..+|
T Consensus 62 ~~p~f~~L~~~l~~~v~~~~~~l~~d~~~~~l~i~~~W~ni~~~-Gg~h~~H~H-------p~~~lSgvyYl~-~p~~~g 132 (201)
T TIGR02466 62 RFPEFAELVQQLDKHVAKFARDLEGDNDGLELRIQKAWVNILPQ-GGTHSPHLH-------PGSVISGTYYVQ-TPENCG 132 (201)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHcCCCccccceEEeeEeEEEcCC-CCccCceEC-------CCceEEEEEEEe-CCCCCC
Confidence 357777655 345677777777542 11 1233443333321 222344433 234566667765 345567
Q ss_pred eEEEE-cCCCCCCCccceeeCCCCccccCCCCCCCCCCeeeeeecCccEEEEeCccccCCCCCCCCCCceEEEEEEE
Q 024285 182 CLWAI-PGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVV 257 (269)
Q Consensus 182 ~l~vi-pGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gdvvl~~~~~~H~~~~n~s~~~R~~~~~~~~ 257 (269)
.+.+. |..+........ .+.........+.+..++|++|||-++++|++.+|.++..|.++.+.|.
T Consensus 133 ~~~f~~p~~~~~~~~~~~----------~~~~~~~~~~~~~v~P~~G~lvlFPS~L~H~v~p~~~~~~RISiSFNl~ 199 (201)
T TIGR02466 133 AIKFEDPRLDDMMAAPMR----------IPNAKRAVQRFVYVPPQEGRVLLFESWLRHEVPPNESEEERISVSFNYA 199 (201)
T ss_pred ceeEecCcchhhhccccc----------cCccccccCccEEECCCCCeEEEECCCCceecCCCCCCCCEEEEEEeeE
Confidence 67654 333221100000 0000011234556777999999999999999999999999999988764
No 13
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=97.28 E-value=0.0043 Score=49.24 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=29.5
Q ss_pred eeeeeecCccEEEEeCccccCCCCCCCCCCceEEEEEEE
Q 024285 219 FVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVV 257 (269)
Q Consensus 219 ~v~~~~~~Gdvvl~~~~~~H~~~~n~s~~~R~~~~~~~~ 257 (269)
...+.|+|||+|++-+..+|...|-+ ...|.+..+.+.
T Consensus 143 ~h~VklPAGdLVlypStSlH~VtPVT-Rg~R~asffW~q 180 (229)
T COG3128 143 NHRVKLPAGDLVLYPSTSLHEVTPVT-RGERFASFFWIQ 180 (229)
T ss_pred ceEEeccCCCEEEcccccceeccccc-cCceEEEeeehH
Confidence 45678999999999999999999855 345666655554
No 14
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=95.47 E-value=0.42 Score=38.59 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=27.7
Q ss_pred CCeeeeeecCccEEEEeCc---cccCCCCCCCC--------CCceEEEEE
Q 024285 217 NDFVPIEVKAGSLVLIHGD---LIHQSFENQSS--------KSRHAYSLH 255 (269)
Q Consensus 217 ~~~v~~~~~~Gdvvl~~~~---~~H~~~~n~s~--------~~R~~~~~~ 255 (269)
...+.+.++.||+++|.+. .+|+..+.... ..|.++++|
T Consensus 145 ~~~~~~~L~~gsl~vm~g~~r~~~H~I~~~~~~~~~~~~~~~~RislTfR 194 (194)
T PF13532_consen 145 DEPIEVPLPPGSLLVMSGEARYDWHGIPPVKKDTHPSHYVRGRRISLTFR 194 (194)
T ss_dssp S-EEEEEE-TTEEEEEETTHHHHEEEE-S-SCEEEESTEE-S-EEEEEEE
T ss_pred CccEEEEcCCCCEEEeChHHhhheeEcccccCCccccccCCCCEEEEEeC
Confidence 3678899999999999986 47998876652 379888876
No 15
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=94.45 E-value=2.4 Score=35.06 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=29.7
Q ss_pred eeeeeecCccEEEEeCc---cccCCCCCCCC------CCceEEEEEE
Q 024285 219 FVPIEVKAGSLVLIHGD---LIHQSFENQSS------KSRHAYSLHV 256 (269)
Q Consensus 219 ~v~~~~~~Gdvvl~~~~---~~H~~~~n~s~------~~R~~~~~~~ 256 (269)
...+.++.|||++|.+. .+|+..+.... ..|..+++|.
T Consensus 166 ~~~l~L~~Gdllvm~G~sr~~~HgVp~~~~~~~p~~g~~RINLTFR~ 212 (213)
T PRK15401 166 LQRILLEHGDVVVWGGPSRLRYHGILPLKAGEHPLTGECRINLTFRK 212 (213)
T ss_pred eEEEEeCCCCEEEECchHhheeccCCcCCCCcCCCCCCCeEEEEeEc
Confidence 46899999999999886 48998765432 3699998874
No 16
>PHA02813 hypothetical protein; Provisional
Probab=92.83 E-value=1.4 Score=38.98 Aligned_cols=70 Identities=21% Similarity=0.132 Sum_probs=48.2
Q ss_pred cCCCCCCCCcccCCCCCccCCCceeEEeEeeeeccCCCceEEEEcCCCCCCCccceeeCCCCccccCCCCCCCCCCeeee
Q 024285 143 QPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPI 222 (269)
Q Consensus 143 ~p~~~~~~~wH~D~~~~~~~~~~~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 222 (269)
.||. .+.||+|+.+........+++.+||.+. .++|.+.+.-+ + ...
T Consensus 102 ~kGq--~F~~H~Dg~~~r~k~~s~~tLLLYLN~~-~~GGeT~f~~~--------------------------~-~ts--- 148 (354)
T PHA02813 102 EKGD--FFNNHRDFIHFKSKNCYCYHLVLYLNNT-SKGGNTNIHIK--------------------------D-NTI--- 148 (354)
T ss_pred CCCc--ccCcccCCceeecCCceEEEEEEEEecc-CCCCceEEEcC--------------------------C-Cce---
Confidence 3544 3689999987654334788999999988 45554333211 0 121
Q ss_pred eecCccEEEEeCccccCCCCCCCC
Q 024285 223 EVKAGSLVLIHGDLIHQSFENQSS 246 (269)
Q Consensus 223 ~~~~Gdvvl~~~~~~H~~~~n~s~ 246 (269)
+..|.+++|+..++|.|.+-.++
T Consensus 149 -I~~g~dlLFdh~l~Heg~~V~sG 171 (354)
T PHA02813 149 -FSTKNDVLFDKTLNHSSDIITDG 171 (354)
T ss_pred -EeecceEEEecccccCCcEeccC
Confidence 33999999999999999987764
No 17
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=89.51 E-value=2.8 Score=37.68 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=53.2
Q ss_pred CCCcccCCCCCccCCCceeEEeEeeeeccCCCceEEEEcCCCCCCCccceeeCCCCccccCCCCCCCCCCeeeeeecCcc
Q 024285 149 EVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGS 228 (269)
Q Consensus 149 ~~~wH~D~~~~~~~~~~~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gd 228 (269)
.+.||+|+.+........+++.+||.+. .++|.+.+.-+ ....+..+.|
T Consensus 115 ~F~~H~Dg~~~rs~e~s~~tLLLYLNd~-~~GGET~f~~~-----------------------------~~~sI~pksg- 163 (418)
T PHA02869 115 YFARHRDFSTVFSKNIICVHLLLYLEQP-ETGGETVIYID-----------------------------NNTSVKLKTD- 163 (418)
T ss_pred cccccccCceecCCCEEEEEEEEEEecc-CCCCceEEEeC-----------------------------CCceEecCCC-
Confidence 3689999987655555788999999988 55554433221 1123566777
Q ss_pred EEEEeCccccCCCCCCCCC---CceEEEEEEE
Q 024285 229 LVLIHGDLIHQSFENQSSK---SRHAYSLHVV 257 (269)
Q Consensus 229 vvl~~~~~~H~~~~n~s~~---~R~~~~~~~~ 257 (269)
++|+..++|.|..-.++. .|.-+.+++-
T Consensus 164 -LLFdh~l~Heg~~V~sG~KyVartDVmyr~k 194 (418)
T PHA02869 164 -HLFDKTIEHESITVESGRKCVALFDVLLEKK 194 (418)
T ss_pred -eEeccccccCCcEeecCeEEEEEEEEEEEec
Confidence 999999999999877753 3555555665
No 18
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=85.88 E-value=1.5 Score=34.90 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=52.5
Q ss_pred CCCCCcccCCCCCccCCCceeEEeEeeeeccCCCceEEEEcCCCCCCCccceeeCCCCccccCCCCCCCCCCeeeeeecC
Q 024285 147 GGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKA 226 (269)
Q Consensus 147 ~~~~~wH~D~~~~~~~~~~~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 226 (269)
...++.|+|..- +....++++.|.--. ..|+..++|+ .. +. -..+.+.+.+
T Consensus 84 nr~t~~HrD~~~----~~~~~~~~~t~~~gd-~~~g~l~lp~------~~---------------~~---~~g~~~~~~~ 134 (171)
T PF12851_consen 84 NRCTHSHRDTHN----MPNGYDVLCTLGRGD-YDGGRLELPG------LD---------------PN---ILGVAFAYQP 134 (171)
T ss_pred ecCccceecCCC----CCCCeEEEEecCCcc-ccCceEeccc------cc---------------cc---cCCEEEecCC
Confidence 345789999843 223455555553211 4566777777 00 11 2357899999
Q ss_pred ccEEEEeCc-cccCCCCCCCC----CCceEEEEEE
Q 024285 227 GSLVLIHGD-LIHQSFENQSS----KSRHAYSLHV 256 (269)
Q Consensus 227 Gdvvl~~~~-~~H~~~~n~s~----~~R~~~~~~~ 256 (269)
||||++.++ ..|+..+-.+. ..|+.+.+-+
T Consensus 135 GtVl~~~~~~~~Hgvtpv~~~~~~~~~R~slvfy~ 169 (171)
T PF12851_consen 135 GTVLIFCAKRELHGVTPVESPNRNHGTRISLVFYQ 169 (171)
T ss_pred CcEEEEcccceeeecCcccCCCCCCCeEEEEEEEe
Confidence 999999999 79999976642 4677776543
No 19
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=85.13 E-value=6.7 Score=32.61 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=30.8
Q ss_pred HHHHHhhhhccEEEecCCCCHHHHHHHHHHHHHHHcc
Q 024285 9 SDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDG 45 (269)
Q Consensus 9 ~~~~~~f~~~Gyvvl~~~l~~~~v~~l~~~~~~~~~~ 45 (269)
+..+-...+.|++|+.+|+-.+.=..+.++++.+...
T Consensus 44 e~ivp~mne~g~~vvd~flg~~~g~~v~~ev~~l~~~ 80 (280)
T KOG3710|consen 44 EYIVPCMNEYGICVVDNFLGSETGKFILKEVEALYET 80 (280)
T ss_pred HHhhhhhhhcceEEEechhhHHHHHHHHHHHHHHHhc
Confidence 3455667889999999999999999999999887655
No 20
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=84.46 E-value=2 Score=38.63 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=34.5
Q ss_pred CCeeeeeecCccEEEEeCc-cccCCCCCCCCCCceEEEEEEEeCC
Q 024285 217 NDFVPIEVKAGSLVLIHGD-LIHQSFENQSSKSRHAYSLHVVETD 260 (269)
Q Consensus 217 ~~~v~~~~~~Gdvvl~~~~-~~H~~~~n~s~~~R~~~~~~~~~~~ 260 (269)
...+...+++||+++||-+ ++|+...-.....++-|...|...|
T Consensus 311 ~~~~~~~l~pGd~vi~DN~rvlH~R~af~~~~~~R~L~g~Y~d~d 355 (366)
T TIGR02409 311 RFKFTFKLEPGDLVLFDNTRLLHARDAFSNPEGKRHLQGCYADWD 355 (366)
T ss_pred ccEEEEEcCCCcEEEEeceEEeecCCCcCCCCCceEEEEEEEccH
Confidence 4567889999999999986 7999988764444455688888875
No 21
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=83.55 E-value=17 Score=31.57 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=24.1
Q ss_pred ccEEEecCCCCHHHHHHHHHHHHHHHccC
Q 024285 18 QGYVVLESFASDEEIEAMRKQMDHLLDGF 46 (269)
Q Consensus 18 ~Gyvvl~~~l~~~~v~~l~~~~~~~~~~~ 46 (269)
--.++.++|+++++|+.|++....-+...
T Consensus 97 P~~~~yhd~ls~~e~d~l~~lak~~l~~s 125 (289)
T KOG1591|consen 97 PRVVLYHDFLSDEECDHLISLAKPKLERS 125 (289)
T ss_pred CceEeehhcCCHHHHHHHHHhhhhhhhce
Confidence 34678999999999999999888766554
No 22
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.70 E-value=20 Score=28.93 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=58.2
Q ss_pred ChHHHhhhcChhHHHHHHHhCC-------CCceeeccceeeecCCC--CCCCCcccCCCCCccCCCceeEEeEeeeec-c
Q 024285 108 DPVFKKFSRSEKTSNLLHSLGY-------KRPVDIQSMYIFKQPGI--GGEVVPHQDNSFLITEPSTCTGLWLALEDA-T 177 (269)
Q Consensus 108 ~~~~~~l~~~p~l~~~~~~l~g-------~~~~~~~~~~~~~~p~~--~~~~~wH~D~~~~~~~~~~~v~~~i~L~d~-~ 177 (269)
.|....++.++....+|+.+.- .++-+.+=..-.++... ...-+.|||..-| +.|.+.|= +
T Consensus 87 epl~da~~~~~~~r~l~aaf~~~~~L~p~~EIe~HQ~Ri~a~~de~glpaPEG~HqDG~D~---------I~I~~vDR~N 157 (226)
T COG4340 87 EPLTDAIADHPVTRGLIAAFELFDPLSPTSEIEMHQFRIEARTDEQGLPAPEGAHQDGVDW---------IIIMLVDRQN 157 (226)
T ss_pred eehhhhhhcCchHHHHHHHHHhcCCCCCcceeeeEEEEEEeecCCcCCCCCccccccCccE---------EEEEEeeecc
Confidence 4666778899999999988632 22222221111222222 1223789998643 23444443 4
Q ss_pred CCCceEEEEcCCCCCCCccceeeCCCCccccCCCCCCCCCCeeeeeecCccEEEE-eCccccCCCCCCC
Q 024285 178 IINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLI-HGDLIHQSFENQS 245 (269)
Q Consensus 178 ~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gdvvl~-~~~~~H~~~~n~s 245 (269)
.++|-+.+.--+|-. ..-.-.+.+|++++. +.++||+.+|...
T Consensus 158 I~gGet~lY~~~~~~-------------------------p~f~kvl~pGe~~~l~Dh~~~H~~tpi~p 201 (226)
T COG4340 158 IDGGETDLYAPDGAS-------------------------PGFFKVLAPGEAVFLDDHRVLHGVTPIVP 201 (226)
T ss_pred ccCceEEEEccCCCC-------------------------cceEEeccCCcEEEeccchhcccccceec
Confidence 555644433332221 122346778888765 5679999999765
No 23
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=79.60 E-value=3.6 Score=28.99 Aligned_cols=81 Identities=14% Similarity=0.161 Sum_probs=39.6
Q ss_pred CCCCCCCcccCCCCCccCCCceeEEeEeeeeccCCCceEEEEcCCCCCCCccceeeCCCCccccCCCCCCCCCCeeeeee
Q 024285 145 GIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEV 224 (269)
Q Consensus 145 ~~~~~~~wH~D~~~~~~~~~~~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 224 (269)
..+....+|.|.. ...+++.+. .+.|+|+|.... .+.. .+ .... .+.+
T Consensus 13 ~~~~~~~~H~D~~------~~~~Til~~-----~~~~gL~~~~~~-------~~~~--------v~----~~~~--~~~v 60 (98)
T PF03171_consen 13 ENGVGIGPHTDDE------DGLLTILFQ-----DEVGGLQVRDDG-------EWVD--------VP----PPPG--GFIV 60 (98)
T ss_dssp CGCEEEEEEEES--------SSEEEEEE-----TSTS-EEEEETT-------EEEE----------------TT--CEEE
T ss_pred ccCCceeCCCcCC------CCeEEEEec-----ccchheeccccc-------cccC--------cc----Cccc--eeee
Confidence 3344578999983 134444443 566778887665 1110 00 0011 4566
Q ss_pred cCccEEE-E----eCccccCCCCCCCCCCceEEEEEEEe
Q 024285 225 KAGSLVL-I----HGDLIHQSFENQSSKSRHAYSLHVVE 258 (269)
Q Consensus 225 ~~Gdvvl-~----~~~~~H~~~~n~s~~~R~~~~~~~~~ 258 (269)
..||.+. + -...+|+..+.. ...|+++.+.+.|
T Consensus 61 ~~G~~l~~~t~g~~~~~~HrV~~~~-~~~R~s~~~f~~p 98 (98)
T PF03171_consen 61 NFGDALEILTNGRYPATLHRVVPPT-EGERYSLTFFLRP 98 (98)
T ss_dssp EEBHHHHHHTTTSS----EEEE--S-TS-EEEEEEEEE-
T ss_pred eceeeeecccCCccCCceeeeEcCC-CCCEEEEEEEECC
Confidence 6666432 1 223789988766 5789998887754
No 24
>PF08856 DUF1826: Protein of unknown function (DUF1826); InterPro: IPR014955 These proteins are functionally uncharacterised.
Probab=78.70 E-value=2.8 Score=34.18 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=28.8
Q ss_pred eeeeecCccEEEEeCc---------cccCCCCCC-CCCCceEEEE
Q 024285 220 VPIEVKAGSLVLIHGD---------LIHQSFENQ-SSKSRHAYSL 254 (269)
Q Consensus 220 v~~~~~~Gdvvl~~~~---------~~H~~~~n~-s~~~R~~~~~ 254 (269)
..-.+++|||.|+.+. ++|||-+-. ++.+|..+++
T Consensus 151 ~i~~~~~G~vallKG~~w~g~~~~glvHRSP~~~~~~~~RLlLtl 195 (196)
T PF08856_consen 151 RIQQLPTGDVALLKGERWPGNEGAGLVHRSPPISGSGERRLLLTL 195 (196)
T ss_pred cceecCCCCEEEEccCCCCCCCCCceeeCCCCCCCCCCceEEEEe
Confidence 3458999999999887 789999887 6678888765
No 25
>KOG3290 consensus Peroxisomal phytanoyl-CoA hydroxylase [Lipid transport and metabolism]
Probab=77.91 E-value=2.2 Score=36.13 Aligned_cols=42 Identities=14% Similarity=0.370 Sum_probs=38.0
Q ss_pred CCCCHHHHHhhhhccEEEecCCCCHHHHHHHHHHHHHHHccC
Q 024285 5 GNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGF 46 (269)
Q Consensus 5 ~~lt~~~~~~f~~~Gyvvl~~~l~~~~v~~l~~~~~~~~~~~ 46 (269)
..|+.++++.|+++||.+++++.+.+++...++.+.+..+..
T Consensus 30 ~~L~~~~~~~~~~~~~~l~~~fst~~e~q~~~nyF~~s~dKi 71 (286)
T KOG3290|consen 30 DVLSQEQREFYNENDFLLHKIFSTQDEAQGFENYFLESCDKI 71 (286)
T ss_pred HHHHHHHHHHHHhCCceeeeccccHHHHhhHHHHHHHhccee
Confidence 357899999999999999999999999999999999887764
No 26
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=77.38 E-value=4.4 Score=34.90 Aligned_cols=42 Identities=7% Similarity=-0.001 Sum_probs=33.1
Q ss_pred CCeeeeeecCccEEEEeCc-cccCCCCCCCCCCceEEEEEEEe
Q 024285 217 NDFVPIEVKAGSLVLIHGD-LIHQSFENQSSKSRHAYSLHVVE 258 (269)
Q Consensus 217 ~~~v~~~~~~Gdvvl~~~~-~~H~~~~n~s~~~R~~~~~~~~~ 258 (269)
...+....++||+++||-+ ++|++.....+..|.+.-+....
T Consensus 231 ~~~~~~~w~~GD~viwDNr~~~H~a~~~~~~~~R~~~R~~v~g 273 (277)
T PRK09553 231 EFQVRWRWQPNDVAIWDNRVTQHYANADYLPQRRIMHRATILG 273 (277)
T ss_pred CeEEEEecCCCCEEEEcCcceeEecccCCCCCceEEEEEeecC
Confidence 4567889999999999987 69999876656678777666543
No 27
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=76.42 E-value=5.7 Score=26.38 Aligned_cols=41 Identities=22% Similarity=0.031 Sum_probs=25.3
Q ss_pred CCCCCCcccCCCCCccCCCceeEEeEeee-ecc--CCCceEEEE
Q 024285 146 IGGEVVPHQDNSFLITEPSTCTGLWLALE-DAT--IINGCLWAI 186 (269)
Q Consensus 146 ~~~~~~wH~D~~~~~~~~~~~v~~~i~L~-d~~--~~~G~l~vi 186 (269)
.+..+.||.|...-.....+.+++.|||. +-. -++|.+.+.
T Consensus 20 ~g~~~~~H~D~~~~~~~~~r~~t~llYLn~~w~~d~~Gg~~~f~ 63 (70)
T PF13661_consen 20 RGDFFGWHVDADPSSSGKRRFLTLLLYLNEDWDEDFGGGELFFD 63 (70)
T ss_pred CCCEeeeeEcCCccccccceeEEEEEEecccccCccCCcEEEEe
Confidence 34568999998753221236788999999 333 334444443
No 28
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=75.72 E-value=28 Score=27.62 Aligned_cols=23 Identities=9% Similarity=0.234 Sum_probs=17.5
Q ss_pred ecCCCCHHHHHHHHHHHHHHHcc
Q 024285 23 LESFASDEEIEAMRKQMDHLLDG 45 (269)
Q Consensus 23 l~~~l~~~~v~~l~~~~~~~~~~ 45 (269)
|++.+..+....|.+++.+....
T Consensus 1 l~~~~~~~~~~~l~~~~~~~~~~ 23 (169)
T TIGR00568 1 LKRYFAFNAQEQLIRDINDVASQ 23 (169)
T ss_pred CCCccChHHHHHHHHHHHHHhhc
Confidence 46778888888888888877655
No 29
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=69.00 E-value=7.6 Score=34.87 Aligned_cols=41 Identities=7% Similarity=0.202 Sum_probs=32.7
Q ss_pred CCeeeeeecCccEEEEeCc-cccCCCCCCCCCCceEEEEEEEeCC
Q 024285 217 NDFVPIEVKAGSLVLIHGD-LIHQSFENQSSKSRHAYSLHVVETD 260 (269)
Q Consensus 217 ~~~v~~~~~~Gdvvl~~~~-~~H~~~~n~s~~~R~~~~~~~~~~~ 260 (269)
...+...+++||+++||-+ ++|+...-.. ++-+...|.+.|
T Consensus 310 ~~~~~~~l~pGd~vi~DN~rvLHgRtaf~g---~R~L~G~Y~d~D 351 (362)
T TIGR02410 310 DNEIEFKLRPGTVLIFDNWRVLHSRTSFTG---YRRMCGCYLTRD 351 (362)
T ss_pred hcEEEEEcCCccEEEEeeEEEeecCCCcCC---ceEEEEEEEccH
Confidence 4577899999999999876 7999988752 355888888765
No 30
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=66.95 E-value=11 Score=31.91 Aligned_cols=38 Identities=11% Similarity=0.281 Sum_probs=28.2
Q ss_pred CCeeeeeecCccEEEEeCc-cccCCCCCCCC--CCceEEEE
Q 024285 217 NDFVPIEVKAGSLVLIHGD-LIHQSFENQSS--KSRHAYSL 254 (269)
Q Consensus 217 ~~~v~~~~~~Gdvvl~~~~-~~H~~~~n~s~--~~R~~~~~ 254 (269)
...+...+++||++|||-+ ++|+...-... ..|++.-+
T Consensus 217 ~~~~~~~l~~Gdivi~DN~r~lHgR~~f~~~~~~~R~L~r~ 257 (262)
T cd00250 217 DNQLTVKLEPGDLLIFDNRRVLHGRTAFSPRYGGDRWLKGC 257 (262)
T ss_pred hhEEEEEcCCCCEEEEechhhhcCCCCCCCCCCCceEEEEE
Confidence 3567899999999999876 79998875532 45665444
No 31
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=65.06 E-value=23 Score=28.79 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=24.6
Q ss_pred eeeeeecCccEEEEe-CccccCCCCCCC-----CCCceEEEEEE
Q 024285 219 FVPIEVKAGSLVLIH-GDLIHQSFENQS-----SKSRHAYSLHV 256 (269)
Q Consensus 219 ~v~~~~~~Gdvvl~~-~~~~H~~~~n~s-----~~~R~~~~~~~ 256 (269)
......++||.++++ ..++|.++|-.. ...|=++.+.|
T Consensus 152 ~~~~l~~p~d~l~~~D~~~~H~vtpI~~~~~~~~g~RDvlvitf 195 (195)
T PF10014_consen 152 FFFTLLEPGDTLLVDDRRVWHYVTPIRPVDPSRPGYRDVLVITF 195 (195)
T ss_dssp EEE---STTEEEEEETTTEEEEE--EEES-TT---EEEEEEEEE
T ss_pred eEEEecCCCCEEEEeCCcceECCCceecCCCCCcEEEEEEEEeC
Confidence 345678999999998 999999998542 14688888776
No 32
>COG2175 TauD Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.85 E-value=13 Score=32.29 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=31.9
Q ss_pred CCeeeeeecCccEEEEeCc-cccCCCCCCCCCCceEEEEEEEeCC
Q 024285 217 NDFVPIEVKAGSLVLIHGD-LIHQSFENQSSKSRHAYSLHVVETD 260 (269)
Q Consensus 217 ~~~v~~~~~~Gdvvl~~~~-~~H~~~~n~s~~~R~~~~~~~~~~~ 260 (269)
...++...++||++|||-+ ++|++..-..+..|++.-+ +..++
T Consensus 236 e~~~r~~wq~gDivIwDNr~~lH~a~~~~~~~~R~l~R~-t~~~d 279 (286)
T COG2175 236 ENQYRHRWQPGDIVIWDNRATLHAATAFYADQRRILHRC-TILGD 279 (286)
T ss_pred hhEEEEecCCCCEEEEeCcceeeccccCCccceEEEEEe-eecCC
Confidence 4678899999999999987 5999987666655554444 44443
No 33
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=62.49 E-value=9.3 Score=30.08 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=27.0
Q ss_pred eeeecCccEEEEeCccccCCCCCCCCCCceEEEEEEEe
Q 024285 221 PIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVE 258 (269)
Q Consensus 221 ~~~~~~Gdvvl~~~~~~H~~~~n~s~~~R~~~~~~~~~ 258 (269)
...++.|.+++||....|.+- |.++..|..+.+-|..
T Consensus 125 ~~~w~~G~~~~fD~s~~H~~~-N~~~~~Rv~L~vD~~h 161 (163)
T PF05118_consen 125 TRHWREGECWVFDDSFEHEVW-NNGDEDRVVLIVDFWH 161 (163)
T ss_dssp EEB--CTEEEEE-TTS-EEEE-ESSSS-EEEEEEEEE-
T ss_pred EEEeccCcEEEEeCCEEEEEE-eCCCCCEEEEEEEeec
Confidence 467899999999999999987 5677899999998765
No 34
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=61.98 E-value=10 Score=29.76 Aligned_cols=44 Identities=14% Similarity=0.317 Sum_probs=32.0
Q ss_pred CCeeeeeecCccEEEEeCccccCCCCCCCCCCceEEEEEEEeCCCccc
Q 024285 217 NDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVETDGCRW 264 (269)
Q Consensus 217 ~~~v~~~~~~Gdvvl~~~~~~H~~~~n~s~~~R~~~~~~~~~~~~~~~ 264 (269)
..++.+.+++||+++.-..+-|+-... ...+...+||+... ..|
T Consensus 112 ~~wiri~~e~GDli~vP~g~~HrF~~~---~~~~i~aiRlF~~~-~gW 155 (157)
T PF03079_consen 112 DVWIRILCEKGDLIVVPAGTYHRFTLG---ESPYIKAIRLFKDE-PGW 155 (157)
T ss_dssp CEEEEEEEETTCEEEE-TT--EEEEES---TTSSEEEEEEESSC-GGE
T ss_pred CEEEEEEEcCCCEEecCCCCceeEEcC---CCCcEEEEEeecCC-CCc
Confidence 457889999999999999999998743 34667888888873 455
No 35
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=61.30 E-value=1.3e+02 Score=27.42 Aligned_cols=185 Identities=17% Similarity=0.168 Sum_probs=95.7
Q ss_pred CHHHHHhhhhcc---EEEecCCCCHHHHHHHHHHHHHHHccCCCCCceeeecCcccccccchhcccccccceeeeccccC
Q 024285 8 NSDNLNFFNSQG---YVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFG 84 (269)
Q Consensus 8 t~~~~~~f~~~G---yvvl~~~l~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 84 (269)
-....+.|+++| .++|+++++++.+..+|+++...+. |.... .| |.-++
T Consensus 23 ~~~~kk~~ekngPf~h~~i~~~vnd~~l~~vrkei~~~~~---------f~~k~----tD---------lyr~~------ 74 (476)
T KOG3844|consen 23 GFPLKKEYEKNGPFNHFIIRDFVNDSLLRVVRKEIHGSIH---------FTEKE----TD---------LYRVL------ 74 (476)
T ss_pred cchHhhhhhccCCCcceeeeccCCHHHHHHHHHHHhhccc---------hhhhc----ch---------hhhee------
Confidence 345667888877 6899999999999999999886432 11100 01 10001
Q ss_pred CCCCcccccccccccccccccccChH---HHhhhcChhHHHHHHHhCCCCceeeccceeeecCCCCCCCCcccCCCCCcc
Q 024285 85 DDGNLKQPKELSINKVGHALHELDPV---FKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLIT 161 (269)
Q Consensus 85 ~~G~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~p~l~~~~~~l~g~~~~~~~~~~~~~~p~~~~~~~wH~D~~~~~~ 161 (269)
+.|-+. .++. + ..|. |++++. ....+-+..+.|...--..++-...- ..+...--|=|-.-
T Consensus 75 QtgdL~-----nl~~----l--e~p~lf~~r~~Ly-ke~r~~~q~vtg~~s~sk~Dms~s~Y-~kgd~LL~HDD~ie--- 138 (476)
T KOG3844|consen 75 QTGDLA-----NLEG----L--EFPALFSFRDSLY-KEARGEIQDVTGGLSTSKIDMSGSYY-RKGDHLLCHDDVIE--- 138 (476)
T ss_pred cccccc-----cccc----c--cchhHHHHHHHHH-HHHHHHHHhccCccccceeeeceeee-eccceecccccccc---
Confidence 112211 0110 0 0122 444443 55666666654321111111111000 01222334444321
Q ss_pred CCCceeEEeEeeeecc---CCCceEEEEcCCCCCCCccceeeCCCCccccCCCCCCCCCCeeeeeecCccEEEEe--Ccc
Q 024285 162 EPSTCTGLWLALEDAT---IINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIH--GDL 236 (269)
Q Consensus 162 ~~~~~v~~~i~L~d~~---~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gdvvl~~--~~~ 236 (269)
.+.+.+.+||.|-. .-+|.|+..|---..- +..-..++..+-..++||- +..
T Consensus 139 --tRriaFilYL~~~Dwds~~GG~L~Lf~~d~~~~---------------------P~s~~asl~P~~Nql~fFeVsp~S 195 (476)
T KOG3844|consen 139 --TRRIAFILYLVDPDWDSEYGGELRLFPDDCPSQ---------------------PKSVAASLEPQWNQLVFFEVSPIS 195 (476)
T ss_pred --ceEEEEEEEecCcccccccCceeEecccccccC---------------------ccchhhccCcccceEEEEEecccc
Confidence 37788889998876 3367777766422110 0011122333444555653 457
Q ss_pred ccCCCCCCCCCCceEEEEEEEeC
Q 024285 237 IHQSFENQSSKSRHAYSLHVVET 259 (269)
Q Consensus 237 ~H~~~~n~s~~~R~~~~~~~~~~ 259 (269)
+|...--.++.+|+++...|--.
T Consensus 196 FH~V~Ev~sde~RlSIsGWfH~p 218 (476)
T KOG3844|consen 196 FHDVEEVLSDEPRLSISGWFHFP 218 (476)
T ss_pred hhhHHHHhccCcceeEeeeecCC
Confidence 89999888888999999888644
No 36
>PRK11354 kil FtsZ inhibitor protein; Reviewed
Probab=58.77 E-value=11 Score=24.95 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=22.8
Q ss_pred CeeeeeecCccEEEEeCccccCCCCCCC
Q 024285 218 DFVPIEVKAGSLVLIHGDLIHQSFENQS 245 (269)
Q Consensus 218 ~~v~~~~~~Gdvvl~~~~~~H~~~~n~s 245 (269)
+...-++.||++|+++.+++=+|..|..
T Consensus 10 ~v~Rq~V~PG~~v~~~grty~ASAN~~~ 37 (73)
T PRK11354 10 EIPRQCVTPGDYVLHEGRTYIASANNIK 37 (73)
T ss_pred eecccccCCceEEEEcCcEEEEEechhh
Confidence 3445678899999999999999987653
No 37
>PRK02963 carbon starvation induced protein; Validated
Probab=57.90 E-value=27 Score=30.73 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=30.9
Q ss_pred CCeeeeeecCccEEEEeCc-cccCCCCCCC--CCCceEE--EEEEEeC
Q 024285 217 NDFVPIEVKAGSLVLIHGD-LIHQSFENQS--SKSRHAY--SLHVVET 259 (269)
Q Consensus 217 ~~~v~~~~~~Gdvvl~~~~-~~H~~~~n~s--~~~R~~~--~~~~~~~ 259 (269)
...+.+.+++||+|+||-+ ++||...-.. +..|+.+ ...|...
T Consensus 264 ~~~~~fkL~pGd~vvfDN~RVLHGR~aF~~~~g~~R~L~r~rG~y~d~ 311 (316)
T PRK02963 264 KGILSVPVPVGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYFAYA 311 (316)
T ss_pred hhEEEEecCCceEEEEeCeEEeeCCCCcCCCCCCceEEEecceEEecc
Confidence 4567889999999999765 8999887653 3455541 5666554
No 38
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=55.51 E-value=14 Score=30.78 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=24.8
Q ss_pred CCeeeeeecCccEEEEeCc-cccCCCCC-CCCCCceEEE
Q 024285 217 NDFVPIEVKAGSLVLIHGD-LIHQSFEN-QSSKSRHAYS 253 (269)
Q Consensus 217 ~~~v~~~~~~Gdvvl~~~~-~~H~~~~n-~s~~~R~~~~ 253 (269)
.......+++||++|+|-+ ++|+..+- .....|.++-
T Consensus 218 ~~~~~~~~~~GDlli~dN~~~lHgR~~~~~~~~~R~L~R 256 (258)
T PF02668_consen 218 EYTYRHRWQPGDLLIWDNHRVLHGRTAFDDPDGDRHLLR 256 (258)
T ss_dssp GGEEEEE--TTEEEEEETTTEEEEE--E-STTSSEEEEE
T ss_pred hhcccccCCCceEEEEcCCeeEecCCCCCCCCCCEEEEE
Confidence 4677889999999999875 79998887 3345676653
No 39
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=55.51 E-value=7.5 Score=25.23 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=21.7
Q ss_pred eeeecCccEEEEeCccccCCCCCCCCC
Q 024285 221 PIEVKAGSLVLIHGDLIHQSFENQSSK 247 (269)
Q Consensus 221 ~~~~~~Gdvvl~~~~~~H~~~~n~s~~ 247 (269)
...+++||+++..+...|+.. |.++.
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~-n~~~~ 63 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVR-NPGDE 63 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEE-EESSS
T ss_pred EeEccCCEEEEECCCCeEEEE-ECCCC
Confidence 689999999999999999985 44433
No 40
>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=54.85 E-value=20 Score=31.98 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=31.0
Q ss_pred CCeeeeeecCccEEEEeC-ccccCCCC--CCCCCCceEEEEEEEeC
Q 024285 217 NDFVPIEVKAGSLVLIHG-DLIHQSFE--NQSSKSRHAYSLHVVET 259 (269)
Q Consensus 217 ~~~v~~~~~~Gdvvl~~~-~~~H~~~~--n~s~~~R~~~~~~~~~~ 259 (269)
.....+.+++|||++|+- +++|+... +.++..|+ +...|++-
T Consensus 345 ~n~~~fk~~~gdvv~FnN~RlLHgr~gy~~~~en~R~-L~GaY~Dw 389 (407)
T KOG3888|consen 345 SNQFRFKTPPGDVVTFNNLRLLHGRTGYEDTPENQRH-LVGAYFDW 389 (407)
T ss_pred ccceEEECCCCCEEEEcceeeeccccccccCccccce-eeeeEeeh
Confidence 345889999999999975 58999764 33445777 66777765
No 41
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=54.63 E-value=9.4 Score=27.91 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=17.6
Q ss_pred eeeeecCccEEEEeCccccCCCCCCC
Q 024285 220 VPIEVKAGSLVLIHGDLIHQSFENQS 245 (269)
Q Consensus 220 v~~~~~~Gdvvl~~~~~~H~~~~n~s 245 (269)
....+++||++++++..+|+......
T Consensus 41 ~~~~l~~g~~~li~p~~~H~~~~~~~ 66 (136)
T PF02311_consen 41 QEYPLKPGDLFLIPPGQPHSYYPDSN 66 (136)
T ss_dssp EEEEE-TT-EEEE-TTS-EEEEE-TT
T ss_pred EEEEEECCEEEEecCCccEEEecCCC
Confidence 45799999999999999999776553
No 42
>PF06047 SynMuv_product: Ras-induced vulval development antagonist; InterPro: IPR009269 This is a family of eukaryotic proteins with undetermined function.
Probab=51.82 E-value=10 Score=27.11 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=16.5
Q ss_pred CCCHHHHHhhhhccEEEec
Q 024285 6 NLNSDNLNFFNSQGYVVLE 24 (269)
Q Consensus 6 ~lt~~~~~~f~~~Gyvvl~ 24 (269)
.||.++++.|+.-|||-==
T Consensus 34 GltseeI~~~E~~GYVMSG 52 (104)
T PF06047_consen 34 GLTSEEIASFEDVGYVMSG 52 (104)
T ss_pred CCCHHHHHHHHhcCeeeec
Confidence 4899999999999998643
No 43
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=51.08 E-value=41 Score=24.23 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=31.6
Q ss_pred CHHHHHhhhhccEEEecC-CCCHHHHHHHHHHHHHHHc
Q 024285 8 NSDNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLD 44 (269)
Q Consensus 8 t~~~~~~f~~~Gyvvl~~-~l~~~~v~~l~~~~~~~~~ 44 (269)
.++..+.+++.||+.|.| -++.+.++++.+...+..+
T Consensus 17 ~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~ 54 (116)
T PF14226_consen 17 AEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFA 54 (116)
T ss_dssp HHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHH
Confidence 356788899999999888 6899999999999988874
No 44
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=48.93 E-value=44 Score=24.01 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.9
Q ss_pred CCCCCCCHHHHHhhhhccEEEecCCC
Q 024285 2 GLAGNLNSDNLNFFNSQGYVVLESFA 27 (269)
Q Consensus 2 ~~~~~lt~~~~~~f~~~Gyvvl~~~l 27 (269)
++.+.+|++-.+.+++.|.+++|.++
T Consensus 31 gAN~~~t~~a~~~L~~rGi~~~PD~~ 56 (102)
T smart00839 31 GANMPLTDEADDILEDRGVLYAPDFA 56 (102)
T ss_pred cCCCCCCHHHHHHHHHCCCEEcCcce
Confidence 56788999999999999999998876
No 45
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=47.93 E-value=21 Score=28.15 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=26.4
Q ss_pred CCeeeeeecCccEEEEeCccccCCCCCCCC
Q 024285 217 NDFVPIEVKAGSLVLIHGDLIHQSFENQSS 246 (269)
Q Consensus 217 ~~~v~~~~~~Gdvvl~~~~~~H~~~~n~s~ 246 (269)
..+|.+-+++||+++.-+.+-||-+-..++
T Consensus 113 d~WIRi~vekGDlivlPaGiyHRFTtt~~n 142 (179)
T KOG2107|consen 113 DQWIRIFVEKGDLIVLPAGIYHRFTTTPSN 142 (179)
T ss_pred CCEEEEEEecCCEEEecCcceeeeecCchH
Confidence 579999999999999999999998765554
No 46
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=47.52 E-value=30 Score=27.66 Aligned_cols=32 Identities=22% Similarity=0.141 Sum_probs=23.9
Q ss_pred eeeeecCccEEEEeCccccCCCCCCCCC-CceEE
Q 024285 220 VPIEVKAGSLVLIHGDLIHQSFENQSSK-SRHAY 252 (269)
Q Consensus 220 v~~~~~~Gdvvl~~~~~~H~~~~n~s~~-~R~~~ 252 (269)
....+++||.+.+++.+.|+-. |.++. .|..+
T Consensus 146 ~~~~l~~Gd~~~~~~~~~H~~~-n~~~~~~~~l~ 178 (185)
T PRK09943 146 QDYHLVAGQSYAINTGIPHSFS-NTSAGICRIIS 178 (185)
T ss_pred EEEEecCCCEEEEcCCCCeeee-CCCCCCeEEEE
Confidence 5678999999999999999855 44443 44433
No 47
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=46.44 E-value=13 Score=30.14 Aligned_cols=12 Identities=33% Similarity=0.684 Sum_probs=9.9
Q ss_pred eeecCccEEEEe
Q 024285 222 IEVKAGSLVLIH 233 (269)
Q Consensus 222 ~~~~~Gdvvl~~ 233 (269)
-.+++||+|||.
T Consensus 127 ~~lqpGDLVfF~ 138 (190)
T PRK10838 127 SKLRTGDLVLFR 138 (190)
T ss_pred CCCCCCcEEEEC
Confidence 367999999995
No 48
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=46.28 E-value=59 Score=25.66 Aligned_cols=39 Identities=10% Similarity=-0.050 Sum_probs=30.2
Q ss_pred CCeeeeeecCccEEEEeCccccCCCCCCCCCCceEEEEE
Q 024285 217 NDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLH 255 (269)
Q Consensus 217 ~~~v~~~~~~Gdvvl~~~~~~H~~~~n~s~~~R~~~~~~ 255 (269)
.....+.+++|..|.++..+||+..--.....++++.-+
T Consensus 104 ~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF~vvdr 142 (162)
T PRK03606 104 GTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDFLVVDR 142 (162)
T ss_pred cceEEEEecCCcEEEeCCCcccccccccCCCceEEEEeC
Confidence 457889999999999999999977765555566655433
No 49
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=44.44 E-value=60 Score=24.10 Aligned_cols=37 Identities=5% Similarity=0.012 Sum_probs=30.6
Q ss_pred HHHHHhhhhccEEEecC-CCCHHHHHHHHHHHHHHHcc
Q 024285 9 SDNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLDG 45 (269)
Q Consensus 9 ~~~~~~f~~~Gyvvl~~-~l~~~~v~~l~~~~~~~~~~ 45 (269)
++..+.+++.||+.|.| -++.+.++++.+...+..+-
T Consensus 58 ~~L~~A~~~~GFf~l~nhGi~~elid~~~~~~~~FF~L 95 (120)
T PLN03176 58 NKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAKEFFAL 95 (120)
T ss_pred HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCC
Confidence 34566788999999887 78999999999999988763
No 50
>PRK10204 hypothetical protein; Provisional
Probab=42.99 E-value=65 Score=19.97 Aligned_cols=39 Identities=13% Similarity=0.038 Sum_probs=29.6
Q ss_pred CCCCCHHHHHhhhh-------------ccEEEecCCCCHHHHHHHHHHHHHH
Q 024285 4 AGNLNSDNLNFFNS-------------QGYVVLESFASDEEIEAMRKQMDHL 42 (269)
Q Consensus 4 ~~~lt~~~~~~f~~-------------~Gyvvl~~~l~~~~v~~l~~~~~~~ 42 (269)
++.||+.|+..+.+ .||-+-.-.++.++..+-.+++.+.
T Consensus 1 ~~kLTDkQKsrlWeqrrn~nfqaS~RLeG~~~p~vtlt~eeA~aRl~~LRr~ 52 (55)
T PRK10204 1 MKKLTDKQKSRLWEQQRNRNFQASRRLEGVEMPLVTLTAEEALARLEELRRH 52 (55)
T ss_pred CccchHHHHHHHHHHHHhhhHHHHhhhcCcccccccccHHHHHHHHHHHHHH
Confidence 45688888887765 7998888888988887766666543
No 51
>PLN02904 oxidoreductase
Probab=42.08 E-value=1.3e+02 Score=26.90 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=0.0
Q ss_pred CCcccCCCCCccCCCceeEEeEeeeeccCCCceEEEEcCCCCCCCccceeeCCCCccccCCCCCCCCCCeeeeeecCccE
Q 024285 150 VVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSL 229 (269)
Q Consensus 150 ~~wH~D~~~~~~~~~~~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gdv 229 (269)
.+.|.|... +-|-+.|. |+|+|.... .+++.+...+|.+
T Consensus 227 ~~~HtD~g~----------lTlL~qd~----~GLQV~~~~---------------------------g~Wi~V~p~pgal 265 (357)
T PLN02904 227 MPPHSDFGS----------LTILLQSS----QGLQIMDCN---------------------------KNWVCVPYIEGAL 265 (357)
T ss_pred CcCccCCCc----------eEEEecCC----CeeeEEeCC---------------------------CCEEECCCCCCeE
Q ss_pred EEEeCc------------cccCCCCCCCCCCceEEEEEEEeCCCcccCC
Q 024285 230 VLIHGD------------LIHQSFENQSSKSRHAYSLHVVETDGCRWSQ 266 (269)
Q Consensus 230 vl~~~~------------~~H~~~~n~s~~~R~~~~~~~~~~~~~~~~~ 266 (269)
|+--+. ++||+-.| +...|+++.+-+.+..++.-.+
T Consensus 266 VVNiGD~Le~~TNG~~kSt~HRVv~~-~~~~R~Si~~F~~p~~d~~i~P 313 (357)
T PLN02904 266 IVQLGDQVEVMSNGIYKSVVHRVTVN-KDYKRLSFASLHSLPLHKKISP 313 (357)
T ss_pred EEEccHHHHHHhCCeeeccCCcccCC-CCCCEEEEEEeecCCCCCeEeC
No 52
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=40.89 E-value=79 Score=25.19 Aligned_cols=45 Identities=9% Similarity=-0.015 Sum_probs=34.7
Q ss_pred CeeeeeecCccEEEEeCccccCCCCCCCCCCceEEEEEEEeCCCc
Q 024285 218 DFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVETDGC 262 (269)
Q Consensus 218 ~~v~~~~~~Gdvvl~~~~~~H~~~~n~s~~~R~~~~~~~~~~~~~ 262 (269)
....+.+++|..|.++..+||...--.....++++.-+-.+.++|
T Consensus 106 ~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vvdr~g~~~nc 150 (171)
T PRK13395 106 EMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVVDRGGPQPNC 150 (171)
T ss_pred ceEEEEecCCcEEEeCCCcccccccccCCCccEEEEeCCcCCCCc
Confidence 478899999999999999999999877666777775544433333
No 53
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=39.88 E-value=34 Score=29.87 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.0
Q ss_pred eeeeecCccEEEEeCccccCC
Q 024285 220 VPIEVKAGSLVLIHGDLIHQS 240 (269)
Q Consensus 220 v~~~~~~Gdvvl~~~~~~H~~ 240 (269)
-.+.+++||+++..+.++|+.
T Consensus 151 n~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 151 NRIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred cccccCCCCEEEeCCCCcccc
Confidence 357899999999999999995
No 54
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=39.88 E-value=1.6e+02 Score=26.29 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=31.0
Q ss_pred HHHHHhhhhccEEEecC-CCCHHHHHHHHHHHHHHHc
Q 024285 9 SDNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLD 44 (269)
Q Consensus 9 ~~~~~~f~~~Gyvvl~~-~l~~~~v~~l~~~~~~~~~ 44 (269)
++..+.+++.||+.|.| -++.+.++++.+...+..+
T Consensus 60 ~~l~~A~~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~ 96 (348)
T PLN02912 60 NQFAHACSSYGFFQIKNHGVPEETIKKMMNVAREFFH 96 (348)
T ss_pred HHHHHHHHHCCEEEEEeCCCCHHHHHHHHHHHHHHhc
Confidence 46778899999998886 7899999999999988765
No 55
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=39.02 E-value=75 Score=23.56 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.1
Q ss_pred eeeecCccEEEEeCccccCCCCCCCCC
Q 024285 221 PIEVKAGSLVLIHGDLIHQSFENQSSK 247 (269)
Q Consensus 221 ~~~~~~Gdvvl~~~~~~H~~~~n~s~~ 247 (269)
...+++||+++.-+...|+-..+.+..
T Consensus 83 ~~~l~~Gd~i~ip~g~~H~~~a~~~~~ 109 (131)
T COG1917 83 KKELKAGDVIIIPPGVVHGLKAVEDEP 109 (131)
T ss_pred ceEecCCCEEEECCCCeeeeccCCCCc
Confidence 458899999999999999998776544
No 56
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=38.73 E-value=1.4e+02 Score=26.87 Aligned_cols=83 Identities=22% Similarity=0.316 Sum_probs=0.0
Q ss_pred cCCCCCCCCcccCCCCCccCCCceeEEeEeeeeccCCCceEEEEcCCCCCCCccceeeCCCCccccCCCCCCCCCCeeee
Q 024285 143 QPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPI 222 (269)
Q Consensus 143 ~p~~~~~~~wH~D~~~~~~~~~~~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 222 (269)
.|...-..+.|.|... +-|-++| +.|+|+|.... .+++.+
T Consensus 222 ~~~~~~G~~~HtD~g~----------lTiL~Qd---~v~GLQV~~~~---------------------------~~Wi~V 261 (358)
T PLN02254 222 DPDRAMGLAPHTDSSL----------LTILYQS---NTSGLQVFREG---------------------------VGWVTV 261 (358)
T ss_pred CcccccCcCCccCCCc----------EEEEecC---CCCCceEECCC---------------------------CEEEEc
Q ss_pred eecCccEEEEeCc------------cccCCCCCCCCCCceEEEEEEEeCCCcccCC
Q 024285 223 EVKAGSLVLIHGD------------LIHQSFENQSSKSRHAYSLHVVETDGCRWSQ 266 (269)
Q Consensus 223 ~~~~Gdvvl~~~~------------~~H~~~~n~s~~~R~~~~~~~~~~~~~~~~~ 266 (269)
...+|.+|+.-+. ++||+-.| +...|+++.+-+.+..++...+
T Consensus 262 ~p~pgalVVNiGD~lq~~SNg~~kS~~HRVv~~-~~~~R~Sia~F~~P~~d~~i~p 316 (358)
T PLN02254 262 PPVPGSLVVNVGDLLHILSNGRFPSVLHRAVVN-KTRHRISVAYFYGPPSDVQISP 316 (358)
T ss_pred ccCCCCEEEEhHHHHHHHhCCeeccccceeecC-CCCCEEEEEEEecCCCCcEEeC
No 57
>PTZ00273 oxidase reductase; Provisional
Probab=38.71 E-value=1.6e+02 Score=25.82 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=30.2
Q ss_pred HHHHhhhhccEEEecC-CCCHHHHHHHHHHHHHHHcc
Q 024285 10 DNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLDG 45 (269)
Q Consensus 10 ~~~~~f~~~Gyvvl~~-~l~~~~v~~l~~~~~~~~~~ 45 (269)
+..+.+++.||+.|.| -++.+.++++.+...+..+.
T Consensus 28 ~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~l 64 (320)
T PTZ00273 28 QIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSL 64 (320)
T ss_pred HHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcC
Confidence 4458899999999987 78999999999988887754
No 58
>PLN02276 gibberellin 20-oxidase
Probab=38.22 E-value=1.7e+02 Score=26.21 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred CCCCCCCCcccCCCCCccCCCceeEEeEeeeeccCCCceEEEEcCCCCCCCccceeeCCCCccccCCCCCCCCCCeeeee
Q 024285 144 PGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIE 223 (269)
Q Consensus 144 p~~~~~~~wH~D~~~~~~~~~~~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 223 (269)
|......+.|.|... +-|-++| +.|+|+|... .+++.+.
T Consensus 219 ~~~~~g~~~HTD~g~----------lTlL~Qd---~v~GLQV~~~----------------------------g~Wi~V~ 257 (361)
T PLN02276 219 PELTLGTGPHCDPTS----------LTILHQD---QVGGLQVFVD----------------------------NKWRSVR 257 (361)
T ss_pred cccccCCccccCCce----------eEEEEec---CCCceEEEEC----------------------------CEEEEcC
Q ss_pred ecCccEEEEe------------CccccCCCCCCCCCCceEEEEEEEeCCCcccCC
Q 024285 224 VKAGSLVLIH------------GDLIHQSFENQSSKSRHAYSLHVVETDGCRWSQ 266 (269)
Q Consensus 224 ~~~Gdvvl~~------------~~~~H~~~~n~s~~~R~~~~~~~~~~~~~~~~~ 266 (269)
..+|.+|+.- ..++||+- +.+...|+++.+-+.+..++...+
T Consensus 258 p~pgalVVNiGD~L~~~TNG~~kSt~HRVv-~~~~~~R~Sia~F~~P~~d~~i~p 311 (361)
T PLN02276 258 PRPGALVVNIGDTFMALSNGRYKSCLHRAV-VNSERERRSLAFFLCPKEDKVVRP 311 (361)
T ss_pred CCCCeEEEEcHHHHHHHhCCccccccceee-cCCCCCEEEEEEEecCCCCCEEeC
No 59
>PF10637 Ofd1_CTDD: Oxoglutarate and iron-dependent oxygenase degradation C-term; InterPro: IPR019601 This entry represents the C-terminal degradation domain of oxoglutarate and iron-dependent oxygenase (Ofd1), the domain being conserved from yeasts to humans. Ofd1 is a prolyl 4-hydroxylase-like 2-oxoglutarate-Fe(II) dioxygenase that accelerates the degradation of Sre1N (the N-terminal transcription factor domain of Sre1) in the presence of oxygen []. Yeast Sre1 is the orthologue of mammalian sterol regulatory element binding protein (SREBP), and it responds to changes in oxygen-dependent sterol synthesis as an indirect measure of oxygen availability. However, unlike the prolyl 4-hydroxylases that regulate mammalian hypoxia-inducible factor, Ofd1 uses multiple domains to regulate Sre1N degradation by oxygen; the Ofd1 N-terminal dioxygenase domain is required for oxygen sensing and this Ofd1 C-terminal domain accelerates Sre1N degradation in yeasts []. ; GO: 0005506 iron ion binding, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0031418 L-ascorbic acid binding, 0055114 oxidation-reduction process; PDB: 3KT4_A 3KT1_A 3KT7_A 3MGU_A.
Probab=36.63 E-value=59 Score=27.93 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=27.3
Q ss_pred HHHHhhhhccEEEecCCCCHHHHHHHHHHHHHH
Q 024285 10 DNLNFFNSQGYVVLESFASDEEIEAMRKQMDHL 42 (269)
Q Consensus 10 ~~~~~f~~~Gyvvl~~~l~~~~v~~l~~~~~~~ 42 (269)
+..++|.++..|-|.+||.++..++|++.+...
T Consensus 22 ~i~~~F~e~S~i~L~~FL~~~~~~~L~~~l~~~ 54 (266)
T PF10637_consen 22 QIQEQFEEESEIQLENFLKPEKAEQLKEALESQ 54 (266)
T ss_dssp HHHHHHHHHSEEEESS-B-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcceEeHHHhcCHHHHHHHHHHHHhh
Confidence 456789999999999999999999999999753
No 60
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=35.21 E-value=68 Score=25.08 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=28.8
Q ss_pred CeeeeeecCccEEEEeCccccCCCCCCC--CCCceEE
Q 024285 218 DFVPIEVKAGSLVLIHGDLIHQSFENQS--SKSRHAY 252 (269)
Q Consensus 218 ~~v~~~~~~Gdvvl~~~~~~H~~~~n~s--~~~R~~~ 252 (269)
....+.|.+|+.++|-+.=.|+-+.+.. ...|.++
T Consensus 110 ~e~~v~L~~G~faiFfP~e~H~P~c~~~~~~~IkKvV 146 (154)
T COG2731 110 DESTVELNPGMFAIFFPGEPHRPGCNVGVPEPIKKVV 146 (154)
T ss_pred cceEEEeCCCCEEEECCCCccccccccCCcceeEEEE
Confidence 5678999999999999999999888775 3356654
No 61
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=34.27 E-value=50 Score=29.03 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=21.5
Q ss_pred eeeeeecCccEEEEeCccccCCCCC
Q 024285 219 FVPIEVKAGSLVLIHGDLIHQSFEN 243 (269)
Q Consensus 219 ~v~~~~~~Gdvvl~~~~~~H~~~~n 243 (269)
-..+.++|||+++-.+.++|+-+..
T Consensus 157 Ln~v~lkpGe~~fl~Agt~HA~~~G 181 (312)
T COG1482 157 LNRVKLKPGEAFFLPAGTPHAYLKG 181 (312)
T ss_pred hcEEecCCCCEEEecCCCceeeccc
Confidence 3468999999999999999997753
No 62
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=33.41 E-value=74 Score=26.66 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=19.8
Q ss_pred eeeeeecCccEEEEeCccc-cCCCC
Q 024285 219 FVPIEVKAGSLVLIHGDLI-HQSFE 242 (269)
Q Consensus 219 ~v~~~~~~Gdvvl~~~~~~-H~~~~ 242 (269)
.....+++||++++..... |.+.+
T Consensus 192 G~t~~l~pGDvlfIPkGs~~hf~tp 216 (233)
T PRK15457 192 GETMIAKAGDVMFIPKGSSIEFGTP 216 (233)
T ss_pred CEEEEeCCCcEEEECCCCeEEecCC
Confidence 4578999999999999998 66444
No 63
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=32.64 E-value=2.1e+02 Score=25.41 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCcccCCCCCccCCCceeEEeEeeeeccCCCceEEEEcCCCCCCCccceeeCCCCccccCCCCCCCCCCeeeeeecCccE
Q 024285 150 VVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSL 229 (269)
Q Consensus 150 ~~wH~D~~~~~~~~~~~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gdv 229 (269)
.+.|.|... +-|-++| +.|+|+|.... .+++.+...+|.+
T Consensus 199 ~~~HTD~g~----------lTlL~Qd---~v~GLQV~~~~---------------------------g~Wi~Vpp~pga~ 238 (335)
T PLN02156 199 FGEHTDPQL----------ISLLRSN---DTAGLQICVKD---------------------------GTWVDVPPDHSSF 238 (335)
T ss_pred CCCccCCCc----------eEEEEeC---CCCceEEEeCC---------------------------CCEEEccCCCCcE
Q ss_pred EEEeCc------------cccCCCCCCCCCCceEEEEEEEeCCCcccCC
Q 024285 230 VLIHGD------------LIHQSFENQSSKSRHAYSLHVVETDGCRWSQ 266 (269)
Q Consensus 230 vl~~~~------------~~H~~~~n~s~~~R~~~~~~~~~~~~~~~~~ 266 (269)
|+.-+. +.||.-.+.... |+++.+-+.+..++.-.+
T Consensus 239 VVNiGD~l~~wTNg~~kSt~HRVv~~~~~~-R~SiafF~~P~~d~~i~p 286 (335)
T PLN02156 239 FVLVGDTLQVMTNGRFKSVKHRVVTNTKRS-RISMIYFAGPPLSEKIAP 286 (335)
T ss_pred EEEhHHHHHHHhCCeeeccceeeecCCCCC-EEEEEEeecCCCCCEEeC
No 64
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=32.42 E-value=74 Score=27.63 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=19.8
Q ss_pred eeeeecCccEEEEeCccccCCCC
Q 024285 220 VPIEVKAGSLVLIHGDLIHQSFE 242 (269)
Q Consensus 220 v~~~~~~Gdvvl~~~~~~H~~~~ 242 (269)
....+++||++|+++..+|....
T Consensus 64 ~~~~l~~Gd~ili~s~~~H~~~~ 86 (302)
T PRK10371 64 EKVQINQGHITLFWACTPHQLTD 86 (302)
T ss_pred EEEEEcCCcEEEEecCCcccccc
Confidence 45789999999999999998654
No 65
>PLN02485 oxidoreductase
Probab=32.26 E-value=2.1e+02 Score=25.17 Aligned_cols=84 Identities=19% Similarity=0.136 Sum_probs=0.0
Q ss_pred cCCCCCCCCcccCCCCCccCCCceeEEeEeeeeccCCCceEEEEcCCCCCCCccceeeCCCCccccCCCCCCCCCCeeee
Q 024285 143 QPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPI 222 (269)
Q Consensus 143 ~p~~~~~~~wH~D~~~~~~~~~~~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 222 (269)
.+......+.|.|... |-|---..+.|+|+|.... .+++.+
T Consensus 200 ~~~~~~g~~~HTD~g~------------lTlL~qd~~~~GLqV~~~~---------------------------g~Wi~V 240 (329)
T PLN02485 200 PPENDIGCGAHTDYGL------------LTLVNQDDDITALQVRNLS---------------------------GEWIWA 240 (329)
T ss_pred CcccCcccccccCCCe------------EEEEeccCCCCeeeEEcCC---------------------------CcEEEC
Q ss_pred eecCccEEEEeCccc------------cCCCCCCCCCCceEEEEEEEeCCCcccCC
Q 024285 223 EVKAGSLVLIHGDLI------------HQSFENQSSKSRHAYSLHVVETDGCRWSQ 266 (269)
Q Consensus 223 ~~~~Gdvvl~~~~~~------------H~~~~n~s~~~R~~~~~~~~~~~~~~~~~ 266 (269)
...+|.+|+.-+.++ ||+. +.....|+++.+-+.+..++.-.+
T Consensus 241 ~p~pg~~vVNiGD~L~~~TnG~~~St~HRVv-~~~~~~R~Si~~F~~p~~d~~i~p 295 (329)
T PLN02485 241 IPIPGTFVCNIGDMLKIWSNGVYQSTLHRVI-NNSPKYRVCVAFFYETNFDAAVEP 295 (329)
T ss_pred CCCCCcEEEEhHHHHHHHHCCEeeCCCceec-CCCCCCeEEEEEEecCCCCceeec
No 66
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=31.98 E-value=65 Score=25.40 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=26.1
Q ss_pred CCeeeeeecCccEEEEeCccccCCCCCCCCCCceEEEEEE
Q 024285 217 NDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHV 256 (269)
Q Consensus 217 ~~~v~~~~~~Gdvvl~~~~~~H~~~~n~s~~~R~~~~~~~ 256 (269)
.....+.+++|..|.++..+||...--..+..++++.-+-
T Consensus 107 ~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~~~~f~vv~~~ 146 (165)
T PF04115_consen 107 ETLRAFLAPGGQGVNYHRGVWHHPLLPLDEPADFLVVDRI 146 (165)
T ss_dssp CCEEEEEE-SS-EEEE-TT-EE-S-EESSSEEEEEEEEEE
T ss_pred cceEEEEEcCCEEEEECCCceeCCccccCCcceEEEEeCC
Confidence 5678999999999999999999988766655666665333
No 67
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=31.69 E-value=70 Score=26.48 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=23.0
Q ss_pred HHHHHhhhhccEEEecCCC-CHHHHHHHHHHH
Q 024285 9 SDNLNFFNSQGYVVLESFA-SDEEIEAMRKQM 39 (269)
Q Consensus 9 ~~~~~~f~~~Gyvvl~~~l-~~~~v~~l~~~~ 39 (269)
.+.++.+.+.|+|||+|+= +++.+.++.+.+
T Consensus 27 ~~~~~~l~~~G~vvlrg~~~~~~~~~~~~~~~ 58 (258)
T PF02668_consen 27 EELREALAEYGFVVLRGFPLDPEQFEALASRL 58 (258)
T ss_dssp HHHHHHHHHHSEEEEESCTSSHHHHHHHHHHH
T ss_pred HHHHHHHhcccEEEEcCCCCCHHHHHHHHHhh
Confidence 4567888999999999975 566666654444
No 68
>PF13101 DUF3945: Protein of unknown function (DUF3945)
Probab=31.31 E-value=31 Score=22.09 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=21.5
Q ss_pred CCCCHHHHHhhhhccEEEecCCCCH
Q 024285 5 GNLNSDNLNFFNSQGYVVLESFASD 29 (269)
Q Consensus 5 ~~lt~~~~~~f~~~Gyvvl~~~l~~ 29 (269)
..||++|.+.|.+-.-|.++|+.+.
T Consensus 33 ~~Ls~~q~~~L~~G~~v~le~m~~k 57 (59)
T PF13101_consen 33 VELSPEQKEDLREGKPVYLEGMVDK 57 (59)
T ss_pred ccCCHHHHHHHHCCCeEEEeeeEcC
Confidence 3589999999999999999988764
No 69
>PF15628 RRM_DME: RRM in Demeter
Probab=31.05 E-value=40 Score=24.18 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.1
Q ss_pred CCCCHHHHHhhhhccEEEecCC
Q 024285 5 GNLNSDNLNFFNSQGYVVLESF 26 (269)
Q Consensus 5 ~~lt~~~~~~f~~~Gyvvl~~~ 26 (269)
..||.+++++.-..|||.++++
T Consensus 64 rGls~~eIq~cF~~G~VCVR~F 85 (103)
T PF15628_consen 64 RGLSREEIQQCFWKGFVCVRGF 85 (103)
T ss_pred cccCHHHHHHHHhcCcEEEeec
Confidence 3578999999999999999985
No 70
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=30.74 E-value=2.8e+02 Score=22.08 Aligned_cols=107 Identities=18% Similarity=0.202 Sum_probs=56.3
Q ss_pred hHHHHHHHhCCCCceeeccceeee-cCCCCCCCCcccCCCCCccCCCceeEEeEeeeeccC--CCceEEEEcCCCCCCCc
Q 024285 119 KTSNLLHSLGYKRPVDIQSMYIFK-QPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATI--INGCLWAIPGSHKNGLV 195 (269)
Q Consensus 119 ~l~~~~~~l~g~~~~~~~~~~~~~-~p~~~~~~~wH~D~~~~~~~~~~~v~~~i~L~d~~~--~~G~l~vipGSH~~~~~ 195 (269)
.+++.|.+-+...+- -++.+ .+| +. ...|||..- +-..-+++.|.|++-.. ++|-+.+...-=+
T Consensus 49 ~fl~~ch~aGQ~rpt----plllrY~~g-dy-n~LHqdlyG---e~vFPlQvv~lLs~Pg~DftGGEFVltEQrPR---- 115 (173)
T PF09859_consen 49 EFLARCHAAGQTRPT----PLLLRYGPG-DY-NCLHQDLYG---EHVFPLQVVILLSEPGEDFTGGEFVLTEQRPR---- 115 (173)
T ss_pred HHHHHHHhccCCCCc----hhhheeCCC-Cc-cccccCCCC---CcccCeEEEEEcCCCCCcccCceEEEEEecCC----
Confidence 355566666544331 12222 232 23 489999742 21234567788877644 3444444332100
Q ss_pred cceeeCCCCccccCCCCCCCCCCeeeeeecCccEEEEeCc--------------cccCCCCCCCCCCceEEEEEEEe
Q 024285 196 RRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGD--------------LIHQSFENQSSKSRHAYSLHVVE 258 (269)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gdvvl~~~~--------------~~H~~~~n~s~~~R~~~~~~~~~ 258 (269)
- ......+.++.||.+||..+ +=|+...-.+ ..|+.+-+-|-+
T Consensus 116 ------------------~-QSR~~V~~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vrs-G~R~tLgliFHD 172 (173)
T PF09859_consen 116 ------------------M-QSRAMVLPLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRVRS-GERHTLGLIFHD 172 (173)
T ss_pred ------------------c-cCccccCCcCCCCEEEEecCCCCcCCCccceecccccccccccc-cceEEEEEEeec
Confidence 0 12344578888999988754 3444444332 457777776654
No 71
>PF08111 Pea-VEAacid: Pea-VEAacid family; InterPro: IPR012593 This family consists of the PEA-VEAacid neuropeptides family. These neuropeptides are isolated from the abdominal perisympathetic organs of the American cockroach. These peptides are found together with Pea-YLS-amide and Pea-SKNacid, giving a unique neuropeptide pattern in abdominal perisympathetic organs. The functions of these neuropeptides are unknown [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0005576 extracellular region
Probab=30.71 E-value=14 Score=16.23 Aligned_cols=10 Identities=40% Similarity=0.601 Sum_probs=6.8
Q ss_pred EEEcCCCCCC
Q 024285 184 WAIPGSHKNG 193 (269)
Q Consensus 184 ~vipGSH~~~ 193 (269)
.+.||||...
T Consensus 2 tltpgshvds 11 (15)
T PF08111_consen 2 TLTPGSHVDS 11 (15)
T ss_pred cccCccchhh
Confidence 3568888754
No 72
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=30.15 E-value=67 Score=24.07 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=21.0
Q ss_pred eeeeecCccEEEEeCccccCCCCC
Q 024285 220 VPIEVKAGSLVLIHGDLIHQSFEN 243 (269)
Q Consensus 220 v~~~~~~Gdvvl~~~~~~H~~~~n 243 (269)
....+++||++.+.+...|+-...
T Consensus 75 ~~~~L~aGD~i~~~~~~~H~~~N~ 98 (125)
T PRK13290 75 EVHPIRPGTMYALDKHDRHYLRAG 98 (125)
T ss_pred EEEEeCCCeEEEECCCCcEEEEcC
Confidence 457899999999999999998753
No 73
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=29.99 E-value=30 Score=26.16 Aligned_cols=11 Identities=9% Similarity=0.486 Sum_probs=9.9
Q ss_pred eecCccEEEEe
Q 024285 223 EVKAGSLVLIH 233 (269)
Q Consensus 223 ~~~~Gdvvl~~ 233 (269)
.+++||+|||.
T Consensus 76 ~~qpGDlvff~ 86 (134)
T TIGR02219 76 AAQPGDVLVFR 86 (134)
T ss_pred cCCCCCEEEEe
Confidence 57999999996
No 74
>PLN02947 oxidoreductase
Probab=29.94 E-value=3e+02 Score=24.88 Aligned_cols=83 Identities=24% Similarity=0.215 Sum_probs=0.0
Q ss_pred cCCCCCCCCcccCCCCCccCCCceeEEeEeeeeccCCCceEEEEcCCCCCCCccceeeCCCCccccCCCCCCCCCCeeee
Q 024285 143 QPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPI 222 (269)
Q Consensus 143 ~p~~~~~~~wH~D~~~~~~~~~~~v~~~i~L~d~~~~~G~l~vipGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 222 (269)
.|...-..+.|.|... +-|-+.| +-|+|+|... .+++.+
T Consensus 237 ~~~~~~G~~~HTD~g~----------lTlL~Qd---~v~GLQV~~~----------------------------g~Wi~V 275 (374)
T PLN02947 237 EPELTLGMPPHSDYGF----------LTLLLQD---EVEGLQIMHA----------------------------GRWVTV 275 (374)
T ss_pred CcccccCCCCccCCCc----------eEEEEec---CCCCeeEeEC----------------------------CEEEeC
Q ss_pred eecCccEEEEeCccccCCCC-----------CCCCCCceEEEEEEEeCCCcccCC
Q 024285 223 EVKAGSLVLIHGDLIHQSFE-----------NQSSKSRHAYSLHVVETDGCRWSQ 266 (269)
Q Consensus 223 ~~~~Gdvvl~~~~~~H~~~~-----------n~s~~~R~~~~~~~~~~~~~~~~~ 266 (269)
...+|.+|+.-+.++..-+. +.....|+++.+-+.+..++...+
T Consensus 276 ~p~pga~VVNvGD~Lq~~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~i~P 330 (374)
T PLN02947 276 EPIPGSFVVNVGDHLEIFSNGRYKSVLHRVRVNSTKPRISVASLHSLPFERVVGP 330 (374)
T ss_pred CCCCCeEEEEeCceeeeeeCCEEeccccccccCCCCCEEEEEEEecCCCCCEEeC
No 75
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=28.28 E-value=97 Score=23.66 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=32.1
Q ss_pred CCCCHHHHHhhhh--ccEEEecC---CCCHHHHHHHHHHHHHH
Q 024285 5 GNLNSDNLNFFNS--QGYVVLES---FASDEEIEAMRKQMDHL 42 (269)
Q Consensus 5 ~~lt~~~~~~f~~--~Gyvvl~~---~l~~~~v~~l~~~~~~~ 42 (269)
..||.++.+++-+ .|+|-++| .+++++++++++.+.+.
T Consensus 82 ~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~ 124 (141)
T PF12419_consen 82 EELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKA 124 (141)
T ss_pred EECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhc
Confidence 4689999888866 78899999 78999999999988863
No 76
>PF12720 DUF3807: Protein of unknown function (DUF3807); InterPro: IPR024526 This is a family of conserved fungal proteins of unknown function.
Probab=28.19 E-value=37 Score=27.07 Aligned_cols=29 Identities=24% Similarity=0.557 Sum_probs=22.5
Q ss_pred CCCCCCCHHHHHhhhhccEEEecCCCCHHHHHHHHHHHHHH
Q 024285 2 GLAGNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHL 42 (269)
Q Consensus 2 ~~~~~lt~~~~~~f~~~Gyvvl~~~l~~~~v~~l~~~~~~~ 42 (269)
|.+++||+||++-|+- ++|.+|+.+=+..
T Consensus 45 GVKRTLTDEQI~IFRH------------SEI~aL~Rere~~ 73 (172)
T PF12720_consen 45 GVKRTLTDEQIEIFRH------------SEIQALRRERELR 73 (172)
T ss_pred CCcccccHHHHHHHHH------------HHHHHHHHHHHHH
Confidence 5688999999999874 7888777665543
No 77
>PF08920 SF3b1: Splicing factor 3B subunit 1; InterPro: IPR015016 This group of proteins consists of several eukaryotic splicing factor 3B subunit 1 proteins, which associate with p14 through a C terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet, which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly []. ; PDB: 2FHO_A 3LQV_P 2PEH_D 2F9J_P 2F9D_Q.
Probab=27.85 E-value=40 Score=26.07 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=13.1
Q ss_pred CCCCCCHHHHHhhhh-ccEEEecCCCCHHHHHHHHHHHHHH
Q 024285 3 LAGNLNSDNLNFFNS-QGYVVLESFASDEEIEAMRKQMDHL 42 (269)
Q Consensus 3 ~~~~lt~~~~~~f~~-~Gyvvl~~~l~~~~v~~l~~~~~~~ 42 (269)
+++.||+|+++..-- +||-||+- ++.-..+|.-..++
T Consensus 83 RNrpLTDEELD~mLPseGYkIl~P---P~gY~Pirtp~rkl 120 (144)
T PF08920_consen 83 RNRPLTDEELDAMLPSEGYKILEP---PAGYEPIRTPARKL 120 (144)
T ss_dssp CTS-S-HHHHHHTS--SSEEE-------TT-----------
T ss_pred ccCcCCHHHHHHhCCcCCcEEcCC---CCCCccccCccccc
Confidence 556678877776555 88888753 33334444443333
No 78
>PRK11171 hypothetical protein; Provisional
Probab=27.84 E-value=66 Score=27.50 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=25.3
Q ss_pred eeeeeecCccEEEEeCccccCCCCCCCCCCceEEE
Q 024285 219 FVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYS 253 (269)
Q Consensus 219 ~v~~~~~~Gdvvl~~~~~~H~~~~n~s~~~R~~~~ 253 (269)
.....+++||++.|.+...|.-...-.+..|+.++
T Consensus 222 ~~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~ 256 (266)
T PRK11171 222 NDWVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLY 256 (266)
T ss_pred CEEEEeCCCCEEEECCCCCEEEECCCCCcEEEEEE
Confidence 45678999999999999999765332334566554
No 79
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=27.79 E-value=75 Score=24.18 Aligned_cols=25 Identities=8% Similarity=0.201 Sum_probs=21.2
Q ss_pred CeeeeeecCccEEEEeCccccCCCC
Q 024285 218 DFVPIEVKAGSLVLIHGDLIHQSFE 242 (269)
Q Consensus 218 ~~v~~~~~~Gdvvl~~~~~~H~~~~ 242 (269)
......+++||++++.+...|....
T Consensus 73 ~~~~~~l~~GD~~~ip~g~~H~~~n 97 (146)
T smart00835 73 KVYDARLREGDVFVVPQGHPHFQVN 97 (146)
T ss_pred eEEEEEecCCCEEEECCCCEEEEEc
Confidence 4557889999999999999997763
No 80
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=27.20 E-value=1.2e+02 Score=26.27 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=28.3
Q ss_pred CHHHHHhhhhccEEEecCCCCHHHHHHHHHHHHH
Q 024285 8 NSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDH 41 (269)
Q Consensus 8 t~~~~~~f~~~Gyvvl~~~l~~~~v~~l~~~~~~ 41 (269)
....++.|+..||.++.| +|+..+..+.+.+..
T Consensus 14 Ks~Al~~lED~Gy~cvDN-lP~~Ll~~l~~~~~~ 46 (284)
T PF03668_consen 14 KSTALRALEDLGYYCVDN-LPPSLLPQLIELLAQ 46 (284)
T ss_pred HHHHHHHHHhcCeeEEcC-CcHHHHHHHHHHHHh
Confidence 345788999999999999 899999998887774
No 81
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=27.06 E-value=62 Score=24.99 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=21.4
Q ss_pred CCeeeeeecCccEEEEeCccccCCC--CCCCCCCceEE
Q 024285 217 NDFVPIEVKAGSLVLIHGDLIHQSF--ENQSSKSRHAY 252 (269)
Q Consensus 217 ~~~v~~~~~~Gdvvl~~~~~~H~~~--~n~s~~~R~~~ 252 (269)
.....+.+++|+.++|-+.=+|+.+ .+.+...|.++
T Consensus 110 ~~~~~i~l~~g~f~iffP~d~H~p~~~~~~~~~v~K~V 147 (153)
T PF04074_consen 110 KNESFITLKPGDFAIFFPEDAHRPGCAVDEPEPVRKVV 147 (153)
T ss_dssp TTEEEEEE-TTEEEEE-TT--EEEEE-BTT--B-EEEE
T ss_pred CCceEEEEcCCEEEEECCCccccccccCCCCceEEEEE
Confidence 3455788999999999999999966 33334556543
No 82
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.89 E-value=96 Score=25.85 Aligned_cols=34 Identities=18% Similarity=0.024 Sum_probs=25.5
Q ss_pred CCCCHHHHHhhhhccEEEecCCCCHHHHHHHHHH
Q 024285 5 GNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQ 38 (269)
Q Consensus 5 ~~lt~~~~~~f~~~Gyvvl~~~l~~~~v~~l~~~ 38 (269)
..++++.++.-++.|..+++|++++.++....+.
T Consensus 98 P~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~ 131 (222)
T PRK07114 98 PLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEEL 131 (222)
T ss_pred CCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHC
Confidence 3467777788888888888888888877764443
No 83
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.38 E-value=99 Score=25.33 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=25.6
Q ss_pred CCCCHHHHHhhhhccEEEecCCCCHHHHHHHHHH
Q 024285 5 GNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQ 38 (269)
Q Consensus 5 ~~lt~~~~~~f~~~Gyvvl~~~l~~~~v~~l~~~ 38 (269)
..++++.++.-++.|..++++++++.++....+.
T Consensus 83 P~~~~~vi~~a~~~~i~~iPG~~TptEi~~A~~~ 116 (201)
T PRK06015 83 PGTTQELLAAANDSDVPLLPGAATPSEVMALREE 116 (201)
T ss_pred CCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHC
Confidence 4567777888888888888888888877665443
No 84
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=25.57 E-value=1.2e+02 Score=21.39 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=21.5
Q ss_pred hhccEEEec-CCCCHHHHHHHHHHHHHHHc
Q 024285 16 NSQGYVVLE-SFASDEEIEAMRKQMDHLLD 44 (269)
Q Consensus 16 ~~~Gyvvl~-~~l~~~~v~~l~~~~~~~~~ 44 (269)
++.||+++. +.++.++=..|.+.+.+++.
T Consensus 2 e~yGYIvt~nd~ls~~~G~~l~~~la~~l~ 31 (91)
T PF11548_consen 2 EEYGYIVTGNDPLSWDEGSRLMEKLAELLH 31 (91)
T ss_dssp --EEEEEES-TT--HHHHHHHHHHHHHHHT
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 468999999 79999888888888888764
No 85
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=24.32 E-value=1.7e+02 Score=24.14 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=33.5
Q ss_pred CCeeeeeecCccEEEEeCccccCCCCCCCCCCceEEEEEEEeCCCcccC
Q 024285 217 NDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVETDGCRWS 265 (269)
Q Consensus 217 ~~~v~~~~~~Gdvvl~~~~~~H~~~~n~s~~~R~~~~~~~~~~~~~~~~ 265 (269)
.+.+.+.+++||+++--+.-.|.+- |.++.+-..+.+ |.+.....|+
T Consensus 123 G~~~v~~~~~Gd~iyVPp~~gH~t~-N~Gd~pLvf~~v-~~~~~~~~y~ 169 (209)
T COG2140 123 GEARVIAVRAGDVIYVPPGYGHYTI-NTGDEPLVFLNV-YPADAGQDYD 169 (209)
T ss_pred CcEEEEEecCCcEEEeCCCcceEee-cCCCCCEEEEEE-EeCCCCceee
Confidence 4578899999999999999999987 676666554444 3333334444
No 86
>PRK02963 carbon starvation induced protein; Validated
Probab=24.16 E-value=96 Score=27.35 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=24.0
Q ss_pred CCcccCCCCCccCCCceeEEeEeeeeccCCCceEEEE
Q 024285 150 VVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAI 186 (269)
Q Consensus 150 ~~wH~D~~~~~~~~~~~v~~~i~L~d~~~~~G~l~vi 186 (269)
.+||.|.+|+..- +.+++...+..-..++|...++
T Consensus 151 L~lHTD~pY~e~p--PGlQlLl~~~~~~~~GGeS~lV 185 (316)
T PRK02963 151 MELHNDGTYVEEI--TDYVLMMKIDEQNMQGGNSLLL 185 (316)
T ss_pred CCCcCCCCCccCC--CCceeeeeeccCCCCCcCeeeE
Confidence 7899999997543 4454455565544677877776
No 87
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=23.81 E-value=1.1e+02 Score=27.35 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=25.2
Q ss_pred CCcccCCCCCccCCCceeEEeEeeeeccCCCceEEEEcCCCCC
Q 024285 150 VVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKN 192 (269)
Q Consensus 150 ~~wH~D~~~~~~~~~~~v~~~i~L~d~~~~~G~l~vipGSH~~ 192 (269)
.+||.|..|...- ..+++..++.. ..++|.+.++-|-.-.
T Consensus 187 l~~HtD~~y~~~p--P~~~~L~c~~~-~~~GG~T~~~d~~~~~ 226 (366)
T TIGR02409 187 LPFHTDNPYRDHP--PGLQLLHCLES-TVEGGDSLFVDGFAVA 226 (366)
T ss_pred ccccccCCccCCC--Cceeeeeeccc-CCCCcceeeeeHHHHH
Confidence 6899998886432 34445555543 4677777777775443
No 88
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=23.47 E-value=1.3e+02 Score=25.55 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=19.4
Q ss_pred eeeeecCccEEEEeCccccCCCC
Q 024285 220 VPIEVKAGSLVLIHGDLIHQSFE 242 (269)
Q Consensus 220 v~~~~~~Gdvvl~~~~~~H~~~~ 242 (269)
....+++||++++.+..+|.-..
T Consensus 67 ~~~~~~~g~~i~i~p~~~h~~~~ 89 (290)
T PRK10572 67 RAFVCRPGDLLLFPPGEIHHYGR 89 (290)
T ss_pred eeEecCCCCEEEECCCCceeecc
Confidence 35789999999999999997543
No 89
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=23.45 E-value=1.1e+02 Score=25.19 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=25.5
Q ss_pred CCeeeeeecCccEEEEeCccccCCCCCCCCCCceEEEEEEEe
Q 024285 217 NDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVE 258 (269)
Q Consensus 217 ~~~v~~~~~~Gdvvl~~~~~~H~~~~n~s~~~R~~~~~~~~~ 258 (269)
.....+.++|||+|+.=..-||.......+..=.++...|..
T Consensus 206 ~~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~ 247 (251)
T PF13621_consen 206 APPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRT 247 (251)
T ss_dssp --EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEES
T ss_pred CceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEecc
Confidence 367889999999999999999998754211223444444444
No 90
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=22.63 E-value=1.3e+02 Score=23.22 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=20.1
Q ss_pred eeeecCccEEEEeCccccCCC
Q 024285 221 PIEVKAGSLVLIHGDLIHQSF 241 (269)
Q Consensus 221 ~~~~~~Gdvvl~~~~~~H~~~ 241 (269)
.+.+++|+.++|-+.=.|+.+
T Consensus 107 ~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 107 TVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred EEEeCCCeEEEECCcccccCC
Confidence 789999999999999999987
No 91
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=22.55 E-value=59 Score=23.16 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=17.3
Q ss_pred CeeeeeecCccEEEEeCccccCCC
Q 024285 218 DFVPIEVKAGSLVLIHGDLIHQSF 241 (269)
Q Consensus 218 ~~v~~~~~~Gdvvl~~~~~~H~~~ 241 (269)
+...+.-++||+|+--+..+|.+.
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~ 102 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVF 102 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEE
T ss_pred ccccceECCCCEEEECCCceEEEE
Confidence 567889999999999999999874
No 92
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=22.53 E-value=49 Score=23.47 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=12.6
Q ss_pred eeeeeecCccEEEEeC
Q 024285 219 FVPIEVKAGSLVLIHG 234 (269)
Q Consensus 219 ~v~~~~~~Gdvvl~~~ 234 (269)
.....+++||++||..
T Consensus 47 ~~~~~~~pGDlif~~~ 62 (105)
T PF00877_consen 47 VPISELQPGDLIFFKG 62 (105)
T ss_dssp EEGGG-TTTEEEEEEG
T ss_pred cchhcCCcccEEEEeC
Confidence 4456899999999998
No 93
>PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function. One of the proteins P32792 from SWISSPROT has been localised to the mitochondria [].
Probab=22.47 E-value=97 Score=27.12 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=32.5
Q ss_pred CCCCCHHHHHhhhhccEEEecCCCCHHHHHHHHHHHH
Q 024285 4 AGNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMD 40 (269)
Q Consensus 4 ~~~lt~~~~~~f~~~Gyvvl~~~l~~~~v~~l~~~~~ 40 (269)
...+|..+.--++|.||+|+=.+-++++.+.+.++-.
T Consensus 13 ~~PltR~la~DLeRRGFIV~v~~~~~ed~~~ve~e~~ 49 (299)
T PF08643_consen 13 HDPLTRSLALDLERRGFIVYVTVSSAEDEKYVESEDR 49 (299)
T ss_pred CCccHHHHHHHHhhCCeEEEEEeCCHHHHHHHHhccC
Confidence 4678999999999999999999999999988877753
No 94
>PF10832 DUF2559: Protein of unknown function (DUF2559); InterPro: IPR022541 This family of proteins appear to be restricted to Proteobacteria. The sequences are annotated as YhfG however currently no function is known.
Probab=22.18 E-value=1.7e+02 Score=18.34 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=27.2
Q ss_pred CCCHHHHHhhhh-------------ccEEEecCCCCHHHHHHHHHHHHHH
Q 024285 6 NLNSDNLNFFNS-------------QGYVVLESFASDEEIEAMRKQMDHL 42 (269)
Q Consensus 6 ~lt~~~~~~f~~-------------~Gyvvl~~~l~~~~v~~l~~~~~~~ 42 (269)
.||+.|...|.+ +|+-+-.--++.+++.+=.+++.+.
T Consensus 2 KLTdKQK~~lw~q~Rn~nfQaS~rLeG~~~~~vtL~~e~a~~RL~eLRrh 51 (54)
T PF10832_consen 2 KLTDKQKSRLWEQRRNANFQASRRLEGVTIPLVTLTAEQALARLEELRRH 51 (54)
T ss_pred cccHHHHHHHHHHHHHhhHHHHHhhcCCCCcceeccHHHHHHHHHHHHHH
Confidence 477888877766 7888877788888877766666544
No 95
>PLN02704 flavonol synthase
Probab=22.07 E-value=1.7e+02 Score=25.85 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=30.3
Q ss_pred HHHHHhhhhccEEEecC-CCCHHHHHHHHHHHHHHHc
Q 024285 9 SDNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLD 44 (269)
Q Consensus 9 ~~~~~~f~~~Gyvvl~~-~l~~~~v~~l~~~~~~~~~ 44 (269)
++..+.+++.||+.|.| -++.+.++++.+...+..+
T Consensus 58 ~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~ 94 (335)
T PLN02704 58 RLIAEASKEWGMFQIVNHGIPSEVISKLQKVGKEFFE 94 (335)
T ss_pred HHHHHHHHHcCEEEEEcCCCCHHHHHHHHHHHHHHHc
Confidence 34577899999988776 7899999999999888765
No 96
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=21.75 E-value=1.8e+02 Score=25.68 Aligned_cols=37 Identities=8% Similarity=0.033 Sum_probs=30.9
Q ss_pred HHHHHhhhhccEEEecC-CCCHHHHHHHHHHHHHHHcc
Q 024285 9 SDNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLDG 45 (269)
Q Consensus 9 ~~~~~~f~~~Gyvvl~~-~l~~~~v~~l~~~~~~~~~~ 45 (269)
++..+.+++.||+.|.| -++.+.++++.+...++.+-
T Consensus 30 ~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~L 67 (332)
T PLN03002 30 ASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFAL 67 (332)
T ss_pred HHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 35668889999998877 78999999999998887753
No 97
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=21.69 E-value=1.3e+02 Score=24.45 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=22.9
Q ss_pred eeeeeecCccEEEEeCccccCCCCCCCCC
Q 024285 219 FVPIEVKAGSLVLIHGDLIHQSFENQSSK 247 (269)
Q Consensus 219 ~v~~~~~~Gdvvl~~~~~~H~~~~n~s~~ 247 (269)
.....+++||+++..+...|+.- |.++.
T Consensus 119 ~~~~~v~pGd~v~IPpg~~H~~i-N~G~e 146 (191)
T PRK04190 119 ARWIEMEPGTVVYVPPYWAHRSV-NTGDE 146 (191)
T ss_pred EEEEEECCCCEEEECCCCcEEeE-ECCCC
Confidence 55689999999999999999965 45443
No 98
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=21.57 E-value=1e+02 Score=26.30 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=24.7
Q ss_pred eeeeeecCccEEEEeCccccCCCCCCCC-CCceEEE
Q 024285 219 FVPIEVKAGSLVLIHGDLIHQSFENQSS-KSRHAYS 253 (269)
Q Consensus 219 ~v~~~~~~Gdvvl~~~~~~H~~~~n~s~-~~R~~~~ 253 (269)
....++++||++++-+.+.|.-. |..+ .-|+.++
T Consensus 217 g~~~~V~~GD~i~i~~~~~h~~~-~~G~~~~~~l~y 251 (260)
T TIGR03214 217 NNWVPVEAGDYIWMGAYCPQACY-AGGRGEFRYLLY 251 (260)
T ss_pred CEEEEecCCCEEEECCCCCEEEE-ecCCCcEEEEEE
Confidence 45679999999999999999654 4433 3455543
No 99
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=21.54 E-value=66 Score=26.80 Aligned_cols=27 Identities=11% Similarity=0.284 Sum_probs=23.5
Q ss_pred CCCCCCCHHHHHhhhhccEEEecCCCC
Q 024285 2 GLAGNLNSDNLNFFNSQGYVVLESFAS 28 (269)
Q Consensus 2 ~~~~~lt~~~~~~f~~~Gyvvl~~~l~ 28 (269)
++++.+|++..+.+++.|.+++|.++.
T Consensus 135 gAN~~~t~~a~~~L~~rGi~~~PD~~a 161 (227)
T cd01076 135 AANGPTTPEADEILHERGVLVVPDILA 161 (227)
T ss_pred CCCCCCCHHHHHHHHHCCCEEEChHHh
Confidence 577889999999999999999998654
No 100
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=21.53 E-value=1.4e+02 Score=24.44 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=22.8
Q ss_pred CCCCHHHHHhhhhccEEEecCCCCHHHHHHHHH
Q 024285 5 GNLNSDNLNFFNSQGYVVLESFASDEEIEAMRK 37 (269)
Q Consensus 5 ~~lt~~~~~~f~~~Gyvvl~~~l~~~~v~~l~~ 37 (269)
..++++-.+.-++.|..++++++++.++....+
T Consensus 87 P~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~ 119 (204)
T TIGR01182 87 PGLTPELAKHAQDHGIPIIPGVATPSEIMLALE 119 (204)
T ss_pred CCCCHHHHHHHHHcCCcEECCCCCHHHHHHHHH
Confidence 345667777777778888888888777665443
No 101
>PRK14053 methyltransferase; Provisional
Probab=21.38 E-value=91 Score=25.13 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=31.9
Q ss_pred CCCHHHHHhhhhccEEEecCCCCHHHHHHHHHHHHHHHcc
Q 024285 6 NLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDG 45 (269)
Q Consensus 6 ~lt~~~~~~f~~~Gyvvl~~~l~~~~v~~l~~~~~~~~~~ 45 (269)
.++.+.+++|+++ |-+=++++.++++.+++.++...+.
T Consensus 110 Ni~~~aVerFq~Q--VeiVD~Ig~eD~~~I~a~I~~~~~k 147 (194)
T PRK14053 110 NISREAVQRFQQQ--VELLDRIGLTDLEEIRKIVDDYKDK 147 (194)
T ss_pred cCCHHHHHHHHhh--eEEEEeecCCCHHHHHHHHHHHHhC
Confidence 4789999999999 7788889888888888888876654
No 102
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=20.63 E-value=1.8e+02 Score=25.89 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=29.3
Q ss_pred eeeecCccEEEE--eCc---cccCCCCCCCCCCceEEEEEEEeCCCcc
Q 024285 221 PIEVKAGSLVLI--HGD---LIHQSFENQSSKSRHAYSLHVVETDGCR 263 (269)
Q Consensus 221 ~~~~~~Gdvvl~--~~~---~~H~~~~n~s~~~R~~~~~~~~~~~~~~ 263 (269)
.+.+..||++=. |++ ++||.-.|. ...|+++.+-+.+..++.
T Consensus 253 alvVNiGD~L~~~TNG~~kSt~HRVv~~~-~~~R~Sia~F~~p~~d~~ 299 (348)
T PLN02912 253 TFIVNLGDQMQVISNDKYKSVLHRAVVNT-DKERISIPTFYCPSEDAV 299 (348)
T ss_pred eEEEEcCHHHHHHhCCEEEcccccccCCC-CCCEEEEEEEecCCCCCe
Confidence 467888888733 322 689986543 456999999888876543
No 103
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=20.51 E-value=1.8e+02 Score=20.95 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=29.1
Q ss_pred CHHHHHhhhhccEEEecCCCCHHHHHHHHHHHHH
Q 024285 8 NSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDH 41 (269)
Q Consensus 8 t~~~~~~f~~~Gyvvl~~~l~~~~v~~l~~~~~~ 41 (269)
.++-.+.|++.|-.|++.-+++++-++|++.+++
T Consensus 68 ~d~v~~~l~~~gg~v~~t~ls~~~e~~L~~al~~ 101 (102)
T PF06897_consen 68 EDKVDAALRKFGGKVLRTSLSEEDEDELQEALDE 101 (102)
T ss_pred HHHHHHHHHhcCCEEEeccCCHHHHHHHHHHHhc
Confidence 4567788999999999999999999999988764
No 104
>PF11369 DUF3160: Protein of unknown function (DUF3160); InterPro: IPR022601 This group of proteins has no known function.
Probab=20.49 E-value=75 Score=30.91 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=18.3
Q ss_pred CCHHHHHhhhhccEEEecCCCC
Q 024285 7 LNSDNLNFFNSQGYVVLESFAS 28 (269)
Q Consensus 7 lt~~~~~~f~~~Gyvvl~~~l~ 28 (269)
||+++++.+.++||||+.+-.+
T Consensus 1 l~~~~~~~L~~NgFvv~~~~~~ 22 (630)
T PF11369_consen 1 LSDEQKEMLSKNGFVVIENPYP 22 (630)
T ss_pred CCHHHHHHHHhCCEEEEeccCC
Confidence 6899999999999999954443
No 105
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.45 E-value=64 Score=28.20 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=20.8
Q ss_pred eeeeecCccEEEEeCccccCCCCC
Q 024285 220 VPIEVKAGSLVLIHGDLIHQSFEN 243 (269)
Q Consensus 220 v~~~~~~Gdvvl~~~~~~H~~~~n 243 (269)
....|++||+++--.++||.-+.-
T Consensus 131 er~~M~~GDfilTP~w~wHdHgn~ 154 (351)
T COG3435 131 ERTPMEAGDFILTPAWTWHDHGNE 154 (351)
T ss_pred ceeeccCCCEEEccCceeccCCCC
Confidence 357999999999999999997743
No 106
>PTZ00273 oxidase reductase; Provisional
Probab=20.39 E-value=2e+02 Score=25.18 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=27.9
Q ss_pred eeeecCccEEEEeCc-----cccCCCCCCCCCCceEEEEEEEeCCCccc
Q 024285 221 PIEVKAGSLVLIHGD-----LIHQSFENQSSKSRHAYSLHVVETDGCRW 264 (269)
Q Consensus 221 ~~~~~~Gdvvl~~~~-----~~H~~~~n~s~~~R~~~~~~~~~~~~~~~ 264 (269)
.+.+..||++=.-+. ++||... . ...|+++.+-+.+..++..
T Consensus 235 ~lvVNvGD~l~~~TnG~~kSt~HRVv~-~-~~~R~Si~~F~~p~~d~~i 281 (320)
T PTZ00273 235 SFVVNIGDMMEMWSNGRYRSTPHRVVN-T-GVERYSMPFFCEPNPNVII 281 (320)
T ss_pred eEEEEHHHHHHHHHCCeeeCCCccccC-C-CCCeEEEEEEEcCCCCceE
Confidence 356666776643333 7899863 2 3579999999888765543
No 107
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=20.26 E-value=88 Score=17.94 Aligned_cols=20 Identities=25% Similarity=0.327 Sum_probs=14.1
Q ss_pred eecCccEEEEeCccccCCCC
Q 024285 223 EVKAGSLVLIHGDLIHQSFE 242 (269)
Q Consensus 223 ~~~~Gdvvl~~~~~~H~~~~ 242 (269)
...+||+|.+++.++-+---
T Consensus 9 ~Y~~Gd~V~~~g~~y~a~~~ 28 (41)
T PF02839_consen 9 TYNAGDRVSYNGKLYQAKWW 28 (41)
T ss_dssp EE-TT-EEEETTEEEEESSS
T ss_pred EEcCCCEEEECCCEEEEeec
Confidence 56789999999998776443
No 108
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=20.15 E-value=86 Score=28.30 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=21.7
Q ss_pred eeecCccEEEEeCccccCCCCCCCCCCce
Q 024285 222 IEVKAGSLVLIHGDLIHQSFENQSSKSRH 250 (269)
Q Consensus 222 ~~~~~Gdvvl~~~~~~H~~~~n~s~~~R~ 250 (269)
..+++||+++|....+|.-... .+..+.
T Consensus 112 ~~L~~GD~~~fP~g~~H~~~n~-~~~~~~ 139 (367)
T TIGR03404 112 DDVGAGDLWYFPPGIPHSLQGL-DEGCEF 139 (367)
T ss_pred eEECCCCEEEECCCCeEEEEEC-CCCeEE
Confidence 4799999999999999986644 344443
No 109
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=20.14 E-value=2e+02 Score=25.07 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=30.9
Q ss_pred HHHHHhhhhccEEEecC-CCCHHHHHHHHHHHHHHHcc
Q 024285 9 SDNLNFFNSQGYVVLES-FASDEEIEAMRKQMDHLLDG 45 (269)
Q Consensus 9 ~~~~~~f~~~Gyvvl~~-~l~~~~v~~l~~~~~~~~~~ 45 (269)
.+..+.+++-||+.|.| -++.+.++++.+...+..+.
T Consensus 21 ~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~L 58 (303)
T PLN02403 21 SLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEE 58 (303)
T ss_pred HHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcC
Confidence 35667899999999887 79999999999988877653
Done!