BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024287
(269 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225432566|ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
chloroplastic-like [Vitis vinifera]
Length = 482
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 214/267 (80%), Positives = 235/267 (88%)
Query: 3 SLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIP 62
SLCQ++EK IFKLES++VLVIDEVDF+FN+SKQV SL+KLL SYSS NNRQTVFASASIP
Sbjct: 216 SLCQMLEKQIFKLESMRVLVIDEVDFMFNASKQVGSLRKLLTSYSSTNNRQTVFASASIP 275
Query: 63 QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPE 122
QHRRFLH+CIQQKWTKSDVVHVHVN I+P+PS LHHRFVIC K + QTLLSL+ SDAPE
Sbjct: 276 QHRRFLHDCIQQKWTKSDVVHVHVNPIEPMPSSLHHRFVICNKYERRQTLLSLLHSDAPE 335
Query: 123 SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQ 182
GIIFVGEQSEKSKKAGNAPS TLL+DFL SY G D+LLLEE+MNFN RAASL EVRQ
Sbjct: 336 CGIIFVGEQSEKSKKAGNAPSATLLIDFLKTSYGGCPDILLLEEDMNFNLRAASLSEVRQ 395
Query: 183 GGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIIT 242
GGYLL+STDIAARG+DLPETTHIYNFDLPR+ +DYLHRAGR RKPFSD+K VT+IIT
Sbjct: 396 RGGYLLISTDIAARGVDLPETTHIYNFDLPRTVVDYLHRAGRAARKPFSDQKCCVTNIIT 455
Query: 243 SEELFVLQRYENELKFKSEELTLQTQC 269
SEE FVLQRYENEL F EEL L TQC
Sbjct: 456 SEERFVLQRYENELMFHCEELFLSTQC 482
>gi|297737002|emb|CBI26203.3| unnamed protein product [Vitis vinifera]
Length = 486
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 214/267 (80%), Positives = 235/267 (88%)
Query: 3 SLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIP 62
SLCQ++EK IFKLES++VLVIDEVDF+FN+SKQV SL+KLL SYSS NNRQTVFASASIP
Sbjct: 220 SLCQMLEKQIFKLESMRVLVIDEVDFMFNASKQVGSLRKLLTSYSSTNNRQTVFASASIP 279
Query: 63 QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPE 122
QHRRFLH+CIQQKWTKSDVVHVHVN I+P+PS LHHRFVIC K + QTLLSL+ SDAPE
Sbjct: 280 QHRRFLHDCIQQKWTKSDVVHVHVNPIEPMPSSLHHRFVICNKYERRQTLLSLLHSDAPE 339
Query: 123 SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQ 182
GIIFVGEQSEKSKKAGNAPS TLL+DFL SY G D+LLLEE+MNFN RAASL EVRQ
Sbjct: 340 CGIIFVGEQSEKSKKAGNAPSATLLIDFLKTSYGGCPDILLLEEDMNFNLRAASLSEVRQ 399
Query: 183 GGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIIT 242
GGYLL+STDIAARG+DLPETTHIYNFDLPR+ +DYLHRAGR RKPFSD+K VT+IIT
Sbjct: 400 RGGYLLISTDIAARGVDLPETTHIYNFDLPRTVVDYLHRAGRAARKPFSDQKCCVTNIIT 459
Query: 243 SEELFVLQRYENELKFKSEELTLQTQC 269
SEE FVLQRYENEL F EEL L TQC
Sbjct: 460 SEERFVLQRYENELMFHCEELFLSTQC 486
>gi|255552301|ref|XP_002517195.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223543830|gb|EEF45358.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 476
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/265 (78%), Positives = 238/265 (89%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ SLCQ++EKHIFKL+S+QVLVIDEVDF+FNSSKQVSSL+KLL SYSSCN+RQTVFASAS
Sbjct: 212 IASLCQMLEKHIFKLDSMQVLVIDEVDFMFNSSKQVSSLRKLLTSYSSCNSRQTVFASAS 271
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQHRRFL++CIQQKWTKSD VHVH+N ++P+PSCL HRFVIC K ++Q LLSL+Q DA
Sbjct: 272 IPQHRRFLYDCIQQKWTKSDAVHVHINPVQPMPSCLQHRFVICSKNQRHQILLSLLQCDA 331
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+SGI+FVGEQSEKSKKAG+AP TTLLVDFL SY SD+LLLEE+MNFN RAASL EV
Sbjct: 332 PKSGIVFVGEQSEKSKKAGHAPPTTLLVDFLETSYSDCSDILLLEEDMNFNLRAASLSEV 391
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+QGGGYLLV+TDIAARG+DLPETTHIYNF+LPR+A+DYLHRAGRTGRKPFSDEK T+I
Sbjct: 392 KQGGGYLLVATDIAARGVDLPETTHIYNFELPRTAVDYLHRAGRTGRKPFSDEKCYATNI 451
Query: 241 ITSEELFVLQRYENELKFKSEELTL 265
IT EE FVLQRYENEL F EEL L
Sbjct: 452 ITPEERFVLQRYENELMFNCEELIL 476
>gi|224111250|ref|XP_002315792.1| predicted protein [Populus trichocarpa]
gi|222864832|gb|EEF01963.1| predicted protein [Populus trichocarpa]
Length = 310
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 211/265 (79%), Positives = 236/265 (89%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ SLCQ++EKH+ KLES+QVLVIDEVDF+FNSSKQVSSL+KLL SYSSCN+RQTVFASAS
Sbjct: 46 IASLCQMLEKHLLKLESMQVLVIDEVDFMFNSSKQVSSLRKLLTSYSSCNSRQTVFASAS 105
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQH RFL++CIQQKWTK DVVHVHVN I+P+P+CL HRFVIC KK ++QTLLSL+QSDA
Sbjct: 106 IPQHNRFLYDCIQQKWTKRDVVHVHVNPIEPMPTCLQHRFVICSKKQRHQTLLSLLQSDA 165
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+SGIIFVGEQSEKSKKAGN P T LVDFL SY S++LLLEE+MNFNSRAASL EV
Sbjct: 166 PKSGIIFVGEQSEKSKKAGNGPPTIDLVDFLKTSYGDCSEILLLEEDMNFNSRAASLSEV 225
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
RQGGGYLLV+TDIAARG+DLPE THIYNF+LPR+A+DYLHRAGRTGRKPFSDEK VTSI
Sbjct: 226 RQGGGYLLVATDIAARGVDLPEITHIYNFNLPRTAVDYLHRAGRTGRKPFSDEKCNVTSI 285
Query: 241 ITSEELFVLQRYENELKFKSEELTL 265
I EE FVLQRYENEL F EEL L
Sbjct: 286 IMPEERFVLQRYENELMFNCEELFL 310
>gi|356520045|ref|XP_003528676.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
chloroplastic-like [Glycine max]
Length = 472
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 201/263 (76%), Positives = 232/263 (88%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+GSLCQ++E+H F LE+V+VL++DEVD +FNSSKQVSSL+K+L SYSSCNNRQTVFASAS
Sbjct: 208 VGSLCQMLERHFFSLETVRVLIVDEVDCIFNSSKQVSSLRKILTSYSSCNNRQTVFASAS 267
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQH RF+H+ +QQKWTK DVVH+HV+A++P+PS L+HRFVIC K K TLLSLIQSDA
Sbjct: 268 IPQHNRFIHDSVQQKWTKRDVVHIHVSAVEPMPSRLYHRFVICDTKRKLHTLLSLIQSDA 327
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PESGIIFV EQSEKSKKAG APST+LL+DFL SY+G D+LLLE++MNFNSRAASLLEV
Sbjct: 328 PESGIIFVAEQSEKSKKAGKAPSTSLLIDFLKTSYQGDLDILLLEDKMNFNSRAASLLEV 387
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R+GGGYLLV+TDIAARG DLPE +HIYNFDLPR+AIDYLHRAGRT RKPFSD TVTSI
Sbjct: 388 RKGGGYLLVATDIAARGFDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDINCTVTSI 447
Query: 241 ITSEELFVLQRYENELKFKSEEL 263
I +E FVLQRYENEL F EEL
Sbjct: 448 IVPDERFVLQRYENELMFNCEEL 470
>gi|11385602|gb|AAG34882.1|AF261027_1 putative chloroplast RNA helicase VDL' isoform 4 [Nicotiana
tabacum]
Length = 425
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/263 (75%), Positives = 233/263 (88%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
MGSLCQ++EKHI KL+S QVLV+DEVDF+FNSSK++SSLK+LL SYSS NRQT+FASAS
Sbjct: 161 MGSLCQMLEKHILKLDSCQVLVVDEVDFMFNSSKEISSLKRLLTSYSSSKNRQTIFASAS 220
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQHRRFL++C+QQKWTK+DVVHVHVN+++P+PSCLHHRFV+C K+ K Q LLSL+Q D+
Sbjct: 221 IPQHRRFLYDCVQQKWTKADVVHVHVNSVEPMPSCLHHRFVVCTKREKNQVLLSLLQVDS 280
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PES IIFV EQSEKSKKAGNAP TLLVDFL +S G S+V LLEE+MNFN RAASL E+
Sbjct: 281 PESAIIFVSEQSEKSKKAGNAPPITLLVDFLMSSSGGFSNVSLLEEDMNFNKRAASLSEL 340
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R GGGYLLV+TDIAARG+DLPETTHIYNFD+P+ A++YLHRAGRTGRKPFSD+K VTSI
Sbjct: 341 RGGGGYLLVATDIAARGVDLPETTHIYNFDIPKDAVNYLHRAGRTGRKPFSDKKCFVTSI 400
Query: 241 ITSEELFVLQRYENELKFKSEEL 263
IT EE FVLQR+ENEL F E+L
Sbjct: 401 ITVEERFVLQRFENELMFCCEQL 423
>gi|11385596|gb|AAG34879.1|AF261024_1 putative chloroplast RNA helicase VDL' isoform 1 [Nicotiana
tabacum]
Length = 466
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/263 (75%), Positives = 233/263 (88%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
MGSLCQ++EKHI KL+S QVLV+DEVDF+FNSSK++SSLK+LL SYSS NRQT+FASAS
Sbjct: 202 MGSLCQMLEKHILKLDSCQVLVVDEVDFMFNSSKEISSLKRLLTSYSSSKNRQTIFASAS 261
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQHRRFL++C+QQKWTK+DVVHVHVN+++P+PSCLHHRFV+C K+ K Q LLSL+Q D+
Sbjct: 262 IPQHRRFLYDCVQQKWTKADVVHVHVNSVEPMPSCLHHRFVVCTKREKNQVLLSLLQVDS 321
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PES IIFV EQSEKSKKAGNAP TLLVDFL +S G S+V LLEE+MNFN RAASL E+
Sbjct: 322 PESAIIFVSEQSEKSKKAGNAPPITLLVDFLMSSSGGFSNVSLLEEDMNFNKRAASLSEL 381
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R GGGYLLV+TDIAARG+DLPETTHIYNFD+P+ A++YLHRAGRTGRKPFSD+K VTSI
Sbjct: 382 RGGGGYLLVATDIAARGVDLPETTHIYNFDIPKDAVNYLHRAGRTGRKPFSDKKCFVTSI 441
Query: 241 ITSEELFVLQRYENELKFKSEEL 263
IT EE FVLQR+ENEL F E+L
Sbjct: 442 ITVEERFVLQRFENELMFCCEQL 464
>gi|11385586|gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL isoform 1 [Nicotiana tabacum]
gi|11385590|gb|AAG34876.1|AF261021_1 putative chloroplast RNA helicase VDL isoform 1 [Nicotiana tabacum]
Length = 466
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 198/263 (75%), Positives = 233/263 (88%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
MGSLCQ++EKHI KL+S QVLV+DEVDF+FNSSK++SSLK+LL SYS+ NRQT+FASAS
Sbjct: 202 MGSLCQMLEKHILKLDSCQVLVVDEVDFMFNSSKEISSLKRLLTSYSTSKNRQTIFASAS 261
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQHRRFL++C+QQKWTK+DVVHVHVN+++P+PSCLHHRFV+C K+ K Q LLSL+Q D+
Sbjct: 262 IPQHRRFLYDCVQQKWTKADVVHVHVNSVEPMPSCLHHRFVVCTKREKNQVLLSLLQVDS 321
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PES IIFV EQSEKSKKAGNAP TLLVDFL +S G S+V LLEE+MNFN RAASL E+
Sbjct: 322 PESAIIFVSEQSEKSKKAGNAPPITLLVDFLMSSSGGFSNVSLLEEDMNFNKRAASLSEL 381
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R GGGYLLV+TDIAARG+DLPETTHIYNFD+P+ A++YLHRAGRTGRKPFSD+K VTSI
Sbjct: 382 RGGGGYLLVATDIAARGVDLPETTHIYNFDIPKDAVNYLHRAGRTGRKPFSDKKCFVTSI 441
Query: 241 ITSEELFVLQRYENELKFKSEEL 263
IT EE FVLQR+ENEL F E+L
Sbjct: 442 ITVEERFVLQRFENELMFCCEQL 464
>gi|42573431|ref|NP_974812.1| DEAD-box ATP-dependent RNA helicase 58 [Arabidopsis thaliana]
gi|108861900|sp|Q3E9C3.1|RH58_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 58,
chloroplastic; Flags: Precursor
gi|332005287|gb|AED92670.1| DEAD-box ATP-dependent RNA helicase 58 [Arabidopsis thaliana]
Length = 472
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/265 (73%), Positives = 231/265 (87%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ SLC ++EKHIF+++SV+VLV+DEVDFLF SSKQV S++KLL S+SSC+ RQTVFASAS
Sbjct: 208 VASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASAS 267
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQH+ F+H+CIQQKWTK DVVHVHV+AI P+P CL HRFV+C K K+Q LL+L++SDA
Sbjct: 268 IPQHKHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVLLALLESDA 327
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PES IIFVGEQSEKSKKAGN PSTTLL++FL SYKGS ++LLLE +MNFNSRAASL E+
Sbjct: 328 PESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEI 387
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
RQGGG+LLVSTDIAARGIDLPETTHI+NFDLP++ DYLHRAGR GRKPFSD K V ++
Sbjct: 388 RQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANL 447
Query: 241 ITSEELFVLQRYENELKFKSEELTL 265
ITSEE FVLQRYENEL F EE+ L
Sbjct: 448 ITSEERFVLQRYENELMFSCEEMML 472
>gi|30687194|ref|NP_197422.2| DEAD-box ATP-dependent RNA helicase 58 [Arabidopsis thaliana]
gi|28393829|gb|AAO42322.1| putative DEAD/DEAH box RNA helicase protein [Arabidopsis thaliana]
gi|199589352|gb|ACH90467.1| At5g19210 [Arabidopsis thaliana]
gi|332005288|gb|AED92671.1| DEAD-box ATP-dependent RNA helicase 58 [Arabidopsis thaliana]
Length = 315
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/265 (73%), Positives = 231/265 (87%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ SLC ++EKHIF+++SV+VLV+DEVDFLF SSKQV S++KLL S+SSC+ RQTVFASAS
Sbjct: 51 VASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASAS 110
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQH+ F+H+CIQQKWTK DVVHVHV+AI P+P CL HRFV+C K K+Q LL+L++SDA
Sbjct: 111 IPQHKHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVLLALLESDA 170
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PES IIFVGEQSEKSKKAGN PSTTLL++FL SYKGS ++LLLE +MNFNSRAASL E+
Sbjct: 171 PESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEI 230
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
RQGGG+LLVSTDIAARGIDLPETTHI+NFDLP++ DYLHRAGR GRKPFSD K V ++
Sbjct: 231 RQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANL 290
Query: 241 ITSEELFVLQRYENELKFKSEELTL 265
ITSEE FVLQRYENEL F EE+ L
Sbjct: 291 ITSEERFVLQRYENELMFSCEEMML 315
>gi|297807977|ref|XP_002871872.1| hypothetical protein ARALYDRAFT_488806 [Arabidopsis lyrata subsp.
lyrata]
gi|297317709|gb|EFH48131.1| hypothetical protein ARALYDRAFT_488806 [Arabidopsis lyrata subsp.
lyrata]
Length = 473
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/265 (73%), Positives = 230/265 (86%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ SLC ++EKHIF+L+SV+VLV+DEVDFLF SSKQV S++KLL S+SSC+ RQTVFASAS
Sbjct: 209 VASLCHMLEKHIFRLDSVKVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASAS 268
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQH+ F+H+CIQQKWTK DVVHVHV+AI P+P CL HRFV+C K K+Q L +L++SDA
Sbjct: 269 IPQHKHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVLRALLESDA 328
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PES IIFVGEQSEKSKKAGN PSTTLL++FL SYKGS ++LLLE +MNFNSRAASL E+
Sbjct: 329 PESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEI 388
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
RQGGG+LLVSTDIAARGIDLPETTHI+NFDLP++ DYLHRAGR GRKPFSD K V ++
Sbjct: 389 RQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANL 448
Query: 241 ITSEELFVLQRYENELKFKSEELTL 265
IT+EE FVLQRYENEL F EEL L
Sbjct: 449 ITAEERFVLQRYENELMFSCEELML 473
>gi|357480217|ref|XP_003610394.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|217074248|gb|ACJ85484.1| unknown [Medicago truncatula]
gi|355511449|gb|AES92591.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|388507084|gb|AFK41608.1| unknown [Medicago truncatula]
Length = 480
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/261 (73%), Positives = 229/261 (87%)
Query: 3 SLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIP 62
SLCQ++E+ +F L +++VLV+DEVDF+FNSSKQVSSL+K+L SYSSCNNRQTVFASASIP
Sbjct: 218 SLCQMLERQLFSLGNLRVLVVDEVDFIFNSSKQVSSLRKILTSYSSCNNRQTVFASASIP 277
Query: 63 QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPE 122
QH +FL+ +QQKWTK DV+H+HV+ ++P+PS L HRF++C K K QTLLSLIQSDAPE
Sbjct: 278 QHNQFLNEAVQQKWTKRDVIHIHVSPVEPMPSRLSHRFIVCDIKRKLQTLLSLIQSDAPE 337
Query: 123 SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQ 182
SGIIFV EQSEKSKKAGN+PST+L++DFL SY GS D+LLLE++MNFNSRAASLLEVR+
Sbjct: 338 SGIIFVSEQSEKSKKAGNSPSTSLVIDFLKTSYHGSLDILLLEDDMNFNSRAASLLEVRK 397
Query: 183 GGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIIT 242
GGGYLLV+TD+AARG+D PE THIYN+DLP++AIDYLHRAGRT RKPFSD TVTSII
Sbjct: 398 GGGYLLVATDVAARGVDFPEMTHIYNYDLPKTAIDYLHRAGRTCRKPFSDVNCTVTSIIV 457
Query: 243 SEELFVLQRYENELKFKSEEL 263
S+E FVLQRYENEL F EL
Sbjct: 458 SQERFVLQRYENELSFVCTEL 478
>gi|356564524|ref|XP_003550503.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
58, chloroplastic-like [Glycine max]
Length = 277
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 193/260 (74%), Positives = 223/260 (85%)
Query: 4 LCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63
LCQ++E+H F LE+V+VL++DEVD +FNSSKQVSSL K+L SYSSC+NRQTVFASASIPQ
Sbjct: 16 LCQMLERHFFSLETVRVLIVDEVDCIFNSSKQVSSLXKILTSYSSCHNRQTVFASASIPQ 75
Query: 64 HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPES 123
H RF+H+ +QQKW K DVVH+HV+A++P+PS L HRF+I K K QTLLSLIQSDAPE
Sbjct: 76 HNRFIHDFVQQKWAKRDVVHIHVSAVEPMPSRLXHRFIISDTKRKLQTLLSLIQSDAPEF 135
Query: 124 GIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQG 183
GIIFV EQSEKSKKAG APST+LL+DFL SY+G D+LLLE++MNFNSRAASLLEVR+G
Sbjct: 136 GIIFVAEQSEKSKKAGKAPSTSLLIDFLKTSYQGDLDILLLEDKMNFNSRAASLLEVRKG 195
Query: 184 GGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITS 243
GGYLLV+TDIAAR +DLPE HIYNFDLPR+AIDYLHRAGRT RKPFSD TVTSII
Sbjct: 196 GGYLLVATDIAAREVDLPEMPHIYNFDLPRTAIDYLHRAGRTCRKPFSDINCTVTSIIVP 255
Query: 244 EELFVLQRYENELKFKSEEL 263
+E FVLQRYENE F EEL
Sbjct: 256 DERFVLQRYENEXMFNCEEL 275
>gi|449433337|ref|XP_004134454.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
chloroplastic-like [Cucumis sativus]
gi|449531697|ref|XP_004172822.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
chloroplastic-like [Cucumis sativus]
Length = 473
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/265 (71%), Positives = 226/265 (85%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+GSLCQ++E+ L S+ VLVIDEVDF+F+SSKQVSSLKKLL SYSS +NRQT+FASAS
Sbjct: 209 VGSLCQMVERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTSYSSFSNRQTIFASAS 268
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQHR FLH+CIQQKWTKS VVH+H+N+ +P+PSCL HRFV C K K+QTLL+L+ +D
Sbjct: 269 IPQHRHFLHDCIQQKWTKSTVVHIHINSTQPMPSCLLHRFVTCEKNKKHQTLLTLLLTDI 328
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+S IIFV EQSEKSKKAG P TTL++DFL SY G SDV+LLEE++N+N RA+SL E+
Sbjct: 329 PQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLKASYGGCSDVILLEEDVNYNLRASSLSEL 388
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
RQGG YL+V+TDI ARGIDLPETTHIYNFDLPR AIDYLHRAGRTGRKPFS+EK VT++
Sbjct: 389 RQGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAGRTGRKPFSEEKCVVTNL 448
Query: 241 ITSEELFVLQRYENELKFKSEELTL 265
ITSEE FVLQ++ENEL F EE+ +
Sbjct: 449 ITSEERFVLQKFENELLFICEEVVV 473
>gi|143456767|sp|Q0JFN7.2|RH58_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 58,
chloroplastic; Flags: Precursor
Length = 438
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 177/267 (66%), Positives = 227/267 (85%), Gaps = 1/267 (0%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ SLCQ+IEK F L+S++VLVIDEVDF+F SSKQVSSL+K+L SYS+ ++RQT+FASAS
Sbjct: 167 VASLCQMIEKRAFSLQSMRVLVIDEVDFIFGSSKQVSSLRKILTSYSAASSRQTIFASAS 226
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQH RF+H+C+Q KWTK+DVVHVHVN ++P+PS L H++ IC KK + LLSL++ DA
Sbjct: 227 IPQHNRFVHDCVQHKWTKTDVVHVHVNPVQPMPSHLQHKYAICSKKERLHVLLSLLEKDA 286
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+SGIIFV EQSEKSKKAG+ PSTT++V+FL +Y GS +VLLLEE+MNFN+RA S EV
Sbjct: 287 PKSGIIFVAEQSEKSKKAGHPPSTTVVVEFLRTTYMGSLEVLLLEEDMNFNARATSFTEV 346
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G G+LLVSTDIA+RG DLP+T+HIYNFDLP++AIDYLHRAGRTGR+PFS +VT++
Sbjct: 347 K-GKGFLLVSTDIASRGFDLPQTSHIYNFDLPKTAIDYLHRAGRTGREPFSKLACSVTTL 405
Query: 241 ITSEELFVLQRYENELKFKSEELTLQT 267
IT +E FVLQR++NELKF EEL +++
Sbjct: 406 ITEDEHFVLQRFQNELKFHCEELPVES 432
>gi|326519807|dbj|BAK00276.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 448
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 172/267 (64%), Positives = 226/267 (84%), Gaps = 1/267 (0%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ SLCQ++EK F L S+++LVIDEVDF+F S+KQV+SL+K+L SY++ ++RQT+FASAS
Sbjct: 177 VASLCQMVEKRAFSLGSIKILVIDEVDFIFGSTKQVNSLRKILNSYTAASSRQTIFASAS 236
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQH RF+H+C+Q KWTKSDVVHVHVN ++P+PS LHH +VIC KK + LLSL++ DA
Sbjct: 237 IPQHNRFVHDCVQHKWTKSDVVHVHVNPVQPMPSHLHHTYVICSKKERLHVLLSLLERDA 296
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+S IIFV +QSEKSK+AGN PS+TL+V+FL YKG+ +VL+LEE+MNFN+RA S EV
Sbjct: 297 PKSVIIFVAQQSEKSKRAGNPPSSTLVVEFLRTEYKGTLEVLVLEEDMNFNARATSFTEV 356
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G G+LLVSTDIA+RG DLP+T+HIYNFDLP++A DYLHRAGRTGR+PFS + +VT++
Sbjct: 357 K-GKGFLLVSTDIASRGFDLPQTSHIYNFDLPKTATDYLHRAGRTGREPFSKSECSVTTL 415
Query: 241 ITSEELFVLQRYENELKFKSEELTLQT 267
IT EE FVLQR++NELKF S+ L L++
Sbjct: 416 ITEEEHFVLQRFQNELKFHSQRLPLES 442
>gi|294462398|gb|ADE76747.1| unknown [Picea sitchensis]
Length = 329
Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 171/274 (62%), Positives = 213/274 (77%), Gaps = 11/274 (4%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ LCQ+ EK KL+++QVLVIDEVD +F ++KQ L+KLL SY+S RQT+FASAS
Sbjct: 56 LACLCQMTEKECLKLDAMQVLVIDEVDSIFGAAKQTYLLRKLLTSYTSIEKRQTIFASAS 115
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQHRRFLH+CIQ KWTK DVVH+HV+ ++P+P CL HR+V C K K+ L+SL+ DA
Sbjct: 116 IPQHRRFLHDCIQHKWTKRDVVHIHVHPVEPMPVCLSHRYVTCQKNEKFDILVSLLGIDA 175
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGS---------SDVLLLEEEMNFN 171
P+ GIIFV EQSEKSK AG P+TT LV+FL + G SD+L+LEE MNFN
Sbjct: 176 PKLGIIFVNEQSEKSKNAGLLPTTTALVEFL-RKFNGQRPGGQAHEISDILVLEESMNFN 234
Query: 172 SRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS 231
+R ASL EVRQ G +LLV+TD+AARG+DLPET+HIYNFDLP+SA DY+HRAGRTGRKPFS
Sbjct: 235 ARTASLSEVRQ-GSHLLVATDLAARGLDLPETSHIYNFDLPKSATDYIHRAGRTGRKPFS 293
Query: 232 DEKWTVTSIITSEELFVLQRYENELKFKSEELTL 265
EK VT++IT++ELFVL+R ENEL FK ++LT
Sbjct: 294 SEKCIVTNLITTDELFVLERIENELSFKCQKLTF 327
>gi|357126966|ref|XP_003565158.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
chloroplastic-like [Brachypodium distachyon]
Length = 446
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 168/267 (62%), Positives = 223/267 (83%), Gaps = 1/267 (0%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ SLCQ++EK F L S+++LVIDEVDF+F SSKQV+S++K+L SY++ + RQT+FASAS
Sbjct: 175 VASLCQMVEKRAFSLGSIKILVIDEVDFIFGSSKQVNSVRKILTSYTAASGRQTIFASAS 234
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQH RF+H+CIQ KWTKS+VVHVHVN ++P+PS LHH++ IC KK + LLSL++ DA
Sbjct: 235 IPQHNRFVHDCIQHKWTKSNVVHVHVNPVQPMPSQLHHKYAICMKKERLHVLLSLLERDA 294
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+S IIFV +QSEKSK+AGN PS+ L+V+F+ +Y GS +VLLLEE MNFN+RA S EV
Sbjct: 295 PKSAIIFVAQQSEKSKRAGNPPSSILVVEFMRTAYNGSLEVLLLEENMNFNARATSFTEV 354
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++ G+LLVSTDIA+RG DLP+ +HIYNFDLP++A DYLHRAGRTGR+PFS + +VT++
Sbjct: 355 KE-KGFLLVSTDIASRGFDLPQISHIYNFDLPKTATDYLHRAGRTGREPFSKSECSVTTL 413
Query: 241 ITSEELFVLQRYENELKFKSEELTLQT 267
IT +E FVLQR++NELKF S+EL L++
Sbjct: 414 ITEDEHFVLQRFQNELKFHSQELPLES 440
>gi|226509832|ref|NP_001147746.1| ATP binding protein [Zea mays]
gi|195613438|gb|ACG28549.1| ATP binding protein [Zea mays]
Length = 447
Score = 352 bits (904), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 171/264 (64%), Positives = 221/264 (83%), Gaps = 3/264 (1%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ SLCQ++E+ F L+S++VLVIDEVDF+F SSKQVSSL+K+L SYS+ ++RQT+FASAS
Sbjct: 174 VASLCQMVERRAFSLQSMRVLVIDEVDFIFGSSKQVSSLRKILTSYSAASSRQTIFASAS 233
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQH RFLH+C+Q KWTK DVVHVHV+ ++P+PS L H++VIC KK + LLSL++ DA
Sbjct: 234 IPQHNRFLHDCVQHKWTKGDVVHVHVHPVQPMPSHLCHKYVICTKKERMHVLLSLLERDA 293
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+S IIFV QSE+SKKAGN PST ++ DFL N YKGS DV+LLEE+MNFN+RAAS EV
Sbjct: 294 PKSAIIFVAGQSERSKKAGNPPSTMVVSDFLRNEYKGSLDVMLLEEDMNFNARAASFSEV 353
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS--DEKWTVT 238
+ G G+LLVSTDIA+RG DLP+T+H+YN DLP++A DYLHRAGRTGR+PFS + + VT
Sbjct: 354 K-GRGFLLVSTDIASRGFDLPQTSHVYNLDLPKTATDYLHRAGRTGRQPFSRLELECCVT 412
Query: 239 SIITSEELFVLQRYENELKFKSEE 262
++IT EE FVL+R++NELKF ++E
Sbjct: 413 TLITEEEHFVLRRFQNELKFHTQE 436
>gi|194699860|gb|ACF84014.1| unknown [Zea mays]
gi|413951214|gb|AFW83863.1| ATP binding protein [Zea mays]
Length = 374
Score = 352 bits (903), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 171/264 (64%), Positives = 221/264 (83%), Gaps = 3/264 (1%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ SLCQ++E+ F L+S++VLVIDEVDF+F SSKQVSSL+K+L SYS+ ++RQT+FASAS
Sbjct: 101 VASLCQMVERRAFSLQSMRVLVIDEVDFIFGSSKQVSSLRKILTSYSAASSRQTIFASAS 160
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQH RFLH+C+Q KWTK DVVHVHV+ ++P+PS L H++VIC KK + LLSL++ DA
Sbjct: 161 IPQHNRFLHDCVQHKWTKGDVVHVHVHPVQPMPSHLCHKYVICTKKERMHVLLSLLERDA 220
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+S IIFV QSE+SKKAGN PST ++ DFL N YKGS DV+LLEE+MNFN+RAAS EV
Sbjct: 221 PKSAIIFVAGQSERSKKAGNPPSTMVVSDFLRNEYKGSLDVMLLEEDMNFNARAASFSEV 280
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS--DEKWTVT 238
+ G G+LLVSTDIA+RG DLP+T+H+YN DLP++A DYLHRAGRTGR+PFS + + VT
Sbjct: 281 K-GRGFLLVSTDIASRGFDLPQTSHVYNLDLPKTATDYLHRAGRTGRQPFSRLELECCVT 339
Query: 239 SIITSEELFVLQRYENELKFKSEE 262
++IT EE FVL+R++NELKF ++E
Sbjct: 340 TLITEEEHFVLRRFQNELKFHTQE 363
>gi|222637690|gb|EEE67822.1| hypothetical protein OsJ_25587 [Oryza sativa Japonica Group]
Length = 395
Score = 296 bits (758), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 147/267 (55%), Positives = 188/267 (70%), Gaps = 44/267 (16%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ SLCQ+IEK F L+S++VLVIDEVDF+F SSKQ
Sbjct: 167 VASLCQMIEKRAFSLQSMRVLVIDEVDFIFGSSKQ------------------------- 201
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+DVVHVHVN ++P+PS L H++ IC KK + LLSL++ DA
Sbjct: 202 ------------------TDVVHVHVNPVQPMPSHLQHKYAICSKKERLHVLLSLLEKDA 243
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+SGIIFV EQSEKSKKAG+ PSTT++V+FL +Y GS +VLLLEE+MNFN+RA S EV
Sbjct: 244 PKSGIIFVAEQSEKSKKAGHPPSTTVVVEFLRTTYMGSLEVLLLEEDMNFNARATSFTEV 303
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G G+LLVSTDIA+RG DLP+T+HIYNFDLP++AIDYLHRAGRTGR+PFS +VT++
Sbjct: 304 K-GKGFLLVSTDIASRGFDLPQTSHIYNFDLPKTAIDYLHRAGRTGREPFSKLACSVTTL 362
Query: 241 ITSEELFVLQRYENELKFKSEELTLQT 267
IT +E FVLQR++NELKF EEL +++
Sbjct: 363 ITEDEHFVLQRFQNELKFHCEELPVES 389
>gi|218189822|gb|EEC72249.1| hypothetical protein OsI_05378 [Oryza sativa Indica Group]
Length = 385
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 147/267 (55%), Positives = 188/267 (70%), Gaps = 44/267 (16%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ SLCQ+IEK F L+S++VLVIDEVDF+F SSKQ
Sbjct: 157 VASLCQMIEKRAFSLQSMRVLVIDEVDFIFGSSKQ------------------------- 191
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+DVVHVHVN ++P+PS L H++ IC KK + LLSL++ DA
Sbjct: 192 ------------------TDVVHVHVNPVQPMPSHLQHKYAICSKKERLHVLLSLLEKDA 233
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+SGIIFV EQSEKSKKAG+ PSTT++V+FL +Y GS +VLLLEE+MNFN+RA S EV
Sbjct: 234 PKSGIIFVAEQSEKSKKAGHPPSTTVVVEFLRTTYMGSLEVLLLEEDMNFNARATSFTEV 293
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G G+LLVSTDIA+RG DLP+T+HIYNFDLP++AIDYLHRAGRTGR+PFS +VT++
Sbjct: 294 K-GKGFLLVSTDIASRGFDLPQTSHIYNFDLPKTAIDYLHRAGRTGREPFSKLACSVTTL 352
Query: 241 ITSEELFVLQRYENELKFKSEELTLQT 267
IT +E FVLQR++NELKF EEL +++
Sbjct: 353 ITEDEHFVLQRFQNELKFHCEELPVES 379
>gi|168052082|ref|XP_001778480.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670078|gb|EDQ56653.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 416
Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/267 (50%), Positives = 187/267 (70%), Gaps = 5/267 (1%)
Query: 4 LCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63
+ ++IE + +V +VIDEVD + ++K+ L KLL+ Y+ RQT+ ASA+IPQ
Sbjct: 148 IARMIETKNLRTNAVNTIVIDEVDAMMGAAKEGGHLHKLLSEYTRPQQRQTILASATIPQ 207
Query: 64 HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPES 123
HRRFL++CIQ KW K DV+H+HV +PS LHHR+V+C K + LLSL+QSDAP +
Sbjct: 208 HRRFLNDCIQNKWVKEDVMHIHVRPEDKMPSYLHHRYVVCEKDDRLPALLSLLQSDAPRA 267
Query: 124 GIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDV----LLLEEEMNFNSRAASLLE 179
IIFV +QSEK+K+AGN P+T + D+++ S D L+LEEE + N+RAA+L +
Sbjct: 268 AIIFVNDQSEKAKRAGNTPTTITVADYIAKMKFSSDDALWEPLVLEEESHVNARAATLAD 327
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R G LLV+T++AARG+DLPE +H+YNF+ P S Y+HRAGRTGR+P ++E TVTS
Sbjct: 328 FRD-GRCLLVATELAARGLDLPEVSHVYNFEWPPSVTSYIHRAGRTGRQPITEELGTVTS 386
Query: 240 IITSEELFVLQRYENELKFKSEELTLQ 266
IT +ELFVL+R ENE+ K E L +Q
Sbjct: 387 FITPKELFVLRRLENEMMLKFEALKVQ 413
>gi|11596136|gb|AAG38496.1|AF261032_4 putative chloroplast RNA helicase VDL' isoform 4 [Nicotiana
tabacum]
Length = 324
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 122/164 (74%), Positives = 145/164 (88%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
MGSLCQ++EKHI KL+S QVLV+DEVDF+FNSSK++SSLK+LL SYSS NRQT+FASAS
Sbjct: 161 MGSLCQMLEKHILKLDSCQVLVVDEVDFMFNSSKEISSLKRLLTSYSSSKNRQTIFASAS 220
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQHRRFL++C+QQKWTK+DVVHVHVN+++P+PSCLHHRFV+C K+ K Q LLSL+Q D+
Sbjct: 221 IPQHRRFLYDCVQQKWTKADVVHVHVNSVEPMPSCLHHRFVVCTKREKNQVLLSLLQVDS 280
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLL 164
PES IIFV EQSEKSKKAGNAP TLLVDFL +S G S+V LL
Sbjct: 281 PESAIIFVSEQSEKSKKAGNAPPITLLVDFLMSSSGGFSNVSLL 324
>gi|11596133|gb|AAG38493.1|AF261032_1 putative chloroplast RNA helicase VDL' isoform 1 [Nicotiana
tabacum]
Length = 365
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 122/164 (74%), Positives = 145/164 (88%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
MGSLCQ++EKHI KL+S QVLV+DEVDF+FNSSK++SSLK+LL SYSS NRQT+FASAS
Sbjct: 202 MGSLCQMLEKHILKLDSCQVLVVDEVDFMFNSSKEISSLKRLLTSYSSSKNRQTIFASAS 261
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQHRRFL++C+QQKWTK+DVVHVHVN+++P+PSCLHHRFV+C K+ K Q LLSL+Q D+
Sbjct: 262 IPQHRRFLYDCVQQKWTKADVVHVHVNSVEPMPSCLHHRFVVCTKREKNQVLLSLLQVDS 321
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLL 164
PES IIFV EQSEKSKKAGNAP TLLVDFL +S G S+V LL
Sbjct: 322 PESAIIFVSEQSEKSKKAGNAPPITLLVDFLMSSSGGFSNVSLL 365
>gi|57899209|dbj|BAD87358.1| putative RNA helicase [Oryza sativa Japonica Group]
Length = 377
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 134/267 (50%), Positives = 172/267 (64%), Gaps = 62/267 (23%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ SLCQ+IEK F L+S++VLVIDEVDF+F SSKQ
Sbjct: 167 VASLCQMIEKRAFSLQSMRVLVIDEVDFIFGSSKQ------------------------- 201
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+DVVHVHVN ++P+PS L H++ IC KK + LLSL++ DA
Sbjct: 202 ------------------TDVVHVHVNPVQPMPSHLQHKYAICSKKERLHVLLSLLEKDA 243
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+SGIIFV EQSEKSKKAG+ PSTT++V+FL +Y GS LE
Sbjct: 244 PKSGIIFVAEQSEKSKKAGHPPSTTVVVEFLRTTYMGS-------------------LEE 284
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+G G+LLVSTDIA+RG DLP+T+HIYNFDLP++AIDYLHRAGRTGR+PFS +VT++
Sbjct: 285 VKGKGFLLVSTDIASRGFDLPQTSHIYNFDLPKTAIDYLHRAGRTGREPFSKLACSVTTL 344
Query: 241 ITSEELFVLQRYENELKFKSEELTLQT 267
IT +E FVLQR++NELKF EEL +++
Sbjct: 345 ITEDEHFVLQRFQNELKFHCEELPVES 371
>gi|297598406|ref|NP_001045527.2| Os01g0970600 [Oryza sativa Japonica Group]
gi|255674118|dbj|BAF07441.2| Os01g0970600, partial [Oryza sativa Japonica Group]
Length = 202
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 117/177 (66%), Positives = 150/177 (84%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ SLCQ+IEK F L+S++VLVIDEVDF+F SSKQVSSL+K+L SYS+ ++RQT+FASAS
Sbjct: 25 VASLCQMIEKRAFSLQSMRVLVIDEVDFIFGSSKQVSSLRKILTSYSAASSRQTIFASAS 84
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQH RF+H+C+Q KWTK+DVVHVHVN ++P+PS L H++ IC KK + LLSL++ DA
Sbjct: 85 IPQHNRFVHDCVQHKWTKTDVVHVHVNPVQPMPSHLQHKYAICSKKERLHVLLSLLEKDA 144
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
P+SGIIFV EQSEKSKKAG+ PSTT++V+FL +Y GS +VLLLEE+MNFN+RA S
Sbjct: 145 PKSGIIFVAEQSEKSKKAGHPPSTTVVVEFLRTTYMGSLEVLLLEEDMNFNARATSF 201
>gi|56541807|emb|CAD29781.1| putative synthesis initiation factor 4A protein [Oryza sativa]
gi|57282040|emb|CAD24774.1| protein synthesis initiation factor 4A-like protein [Oryza sativa]
Length = 213
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 120/188 (63%), Positives = 152/188 (80%), Gaps = 1/188 (0%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ SLCQ+IEK F L+S++VLVIDEVDF+F SSKQVSSL+K+L SYS+ ++RQT+FASAS
Sbjct: 27 VASLCQMIEKRAFSLQSMRVLVIDEVDFIFGSSKQVSSLRKILTSYSAASSRQTIFASAS 86
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQH RF+H+C+Q KWTK+DVVHVHVN ++P+PS L H++ IC KK + LLSL++ DA
Sbjct: 87 IPQHNRFVHDCVQHKWTKTDVVHVHVNPVQPMPSHLQHKYAICSKKERLHVLLSLLEKDA 146
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+SGIIFV EQSEKSKKAG+ PSTT+ +FL +Y GS VLLLEE+MNFN+RA S E
Sbjct: 147 PKSGIIFVAEQSEKSKKAGHPPSTTVGXEFLRTTYMGSLXVLLLEEDMNFNARATSFTE- 205
Query: 181 RQGGGYLL 188
G +LL
Sbjct: 206 GXGKSFLL 213
>gi|11385604|gb|AAG34883.1|AF261028_1 putative chloroplast RNA helicase VDL' isoform 5 [Nicotiana
tabacum]
Length = 390
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/162 (74%), Positives = 137/162 (84%)
Query: 102 ICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDV 161
+C K+ K Q LLSL+Q D+PES IIFV EQSEKSKKAGNAP TLLVDFL +S G S+V
Sbjct: 227 VCTKREKNQVLLSLLQVDSPESAIIFVSEQSEKSKKAGNAPPITLLVDFLMSSSGGFSNV 286
Query: 162 LLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHR 221
LLEE+MNFN RAASL E+R GGGYLLV+TDIAARG+DLPETTHIYNFD+P+ A++YLHR
Sbjct: 287 SLLEEDMNFNKRAASLSELRGGGGYLLVATDIAARGVDLPETTHIYNFDIPKDAVNYLHR 346
Query: 222 AGRTGRKPFSDEKWTVTSIITSEELFVLQRYENELKFKSEEL 263
AGRTGRKPFSD+K VTSIIT EE FVLQR+ENEL F E+L
Sbjct: 347 AGRTGRKPFSDKKCFVTSIITVEERFVLQRFENELMFCCEQL 388
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/26 (76%), Positives = 24/26 (92%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEV 26
MGSLCQ++EKHI KL+S QVLV+DEV
Sbjct: 202 MGSLCQMLEKHILKLDSCQVLVVDEV 227
>gi|302789472|ref|XP_002976504.1| hypothetical protein SELMODRAFT_267992 [Selaginella moellendorffii]
gi|300155542|gb|EFJ22173.1| hypothetical protein SELMODRAFT_267992 [Selaginella moellendorffii]
Length = 428
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 112/261 (42%), Positives = 170/261 (65%), Gaps = 9/261 (3%)
Query: 3 SLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIP 62
++C++IE KL +V +V+DEVD + Q+ + LL YS RQT+FASA++P
Sbjct: 162 TVCRMIETGNLKLNAVSTIVVDEVDTAVHKGTQIL-VSNLLTKYSFAEKRQTIFASATVP 220
Query: 63 QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPE 122
QH RF+H+C+Q KWTK +VH++V +PS L HR+VICG + K L + I +DAP+
Sbjct: 221 QHNRFIHDCVQNKWTKPKIVHIYVRPEVKMPSNLSHRYVICGNEDKLSVLHATIMADAPK 280
Query: 123 SGIIFVGEQSEKSKKAGNAPSTTLLVDF-------LSNSYKGSSDVLLLEEEMNFNSRAA 175
+ +F EQSEK K+ G P T ++DF + S ++L+LEE MN ++R A
Sbjct: 281 AAFVFANEQSEKGKREGLVPRTRAMLDFFEQKKEEMPESEASQWELLILEECMNIHARFA 340
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+ +++ +LL +TD+AARG+D+PE TH+YN +LP S + Y+HRAGRT RKP DE+
Sbjct: 341 NSRKLKD-SKFLLFATDLAARGLDVPEVTHVYNLELPSSTVAYIHRAGRTARKPLEDEQC 399
Query: 236 TVTSIITSEELFVLQRYENEL 256
VT++++ E FV+++ ENE+
Sbjct: 400 VVTTLLSEREEFVIRKLENEI 420
>gi|302783262|ref|XP_002973404.1| hypothetical protein SELMODRAFT_413731 [Selaginella moellendorffii]
gi|300159157|gb|EFJ25778.1| hypothetical protein SELMODRAFT_413731 [Selaginella moellendorffii]
Length = 707
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 162/261 (62%), Gaps = 10/261 (3%)
Query: 3 SLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIP 62
++C++IE KL +V +V+DEVD + Q+ + LL YS RQT+FASA++P
Sbjct: 263 TVCRMIETGNLKLNAVSTIVVDEVDTAVHKGTQIL-VSNLLTKYSFAEKRQTIFASATVP 321
Query: 63 QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPE 122
QH RF+H+C+Q KWTK + H++V +PS L HR+VICG + K L + I +DAP+
Sbjct: 322 QHNRFIHDCVQNKWTKPKIAHIYVRPEVKMPSNLSHRYVICGNEDKLSVLHATIMADAPK 381
Query: 123 SGIIFVGEQSEKSKKAGNAPSTTLLVDF-------LSNSYKGSSDVLLLEEEMNFNSRAA 175
+ +F EQSEK K+ G P T ++DF + S ++L+LEE MN ++R A
Sbjct: 382 AAFVFANEQSEKGKREGLVPRTRAMLDFFEHKKEEMPESEASQWELLILEECMNIHARFA 441
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+ +++ +LL +TD+AARG+D+PE TH+YN +LP S + Y+HRAGRT RKP DE+
Sbjct: 442 NSRKLKD-SKFLLFATDLAARGLDVPEVTHVYNLELPSSTVAYIHRAGRTARKPLEDEQC 500
Query: 236 TVTSIITSEELFVLQRYENEL 256
VT+ + + L+R E
Sbjct: 501 VVTT-LARVAILALERQREEF 520
>gi|413951215|gb|AFW83864.1| hypothetical protein ZEAMMB73_208735 [Zea mays]
Length = 220
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/163 (64%), Positives = 133/163 (81%), Gaps = 3/163 (1%)
Query: 102 ICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDV 161
IC KK + LLSL++ DAP+S IIFV QSE+SKKAGN PST ++ DFL N YKGS DV
Sbjct: 48 ICTKKERMHVLLSLLERDAPKSAIIFVAGQSERSKKAGNPPSTMVVSDFLRNEYKGSLDV 107
Query: 162 LLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHR 221
+LLEE+MNFN+RAAS EV+ G G+LLVSTDIA+RG DLP+T+H+YN DLP++A DYLHR
Sbjct: 108 MLLEEDMNFNARAASFSEVK-GRGFLLVSTDIASRGFDLPQTSHVYNLDLPKTATDYLHR 166
Query: 222 AGRTGRKPFS--DEKWTVTSIITSEELFVLQRYENELKFKSEE 262
AGRTGR+PFS + + VT++IT EE FVL+R++NELKF ++E
Sbjct: 167 AGRTGRQPFSRLELECCVTTLITEEEHFVLRRFQNELKFHTQE 209
>gi|449515382|ref|XP_004164728.1| PREDICTED: uncharacterized LOC101209829, partial [Cucumis sativus]
Length = 331
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/158 (55%), Positives = 107/158 (67%), Gaps = 31/158 (19%)
Query: 51 NRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQ 110
NRQT+FASASIPQHR FLH+CIQQKWTKS VVH+H+N+ +P+PSCL HRFV C K K+Q
Sbjct: 1 NRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPMPSCLLHRFVTCEKNKKHQ 60
Query: 111 TLLSLIQSDAPESGIIFVGE-------------------------------QSEKSKKAG 139
TLL+L+ +D P+S IIFV E QSEKSKKAG
Sbjct: 61 TLLTLLLTDIPQSAIIFVSEQENLVLGSQSVQIVAKELKNCNLSDSVTLDLQSEKSKKAG 120
Query: 140 NAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
P TTL++DFL SY G SDV+LLEE++N+N RA+SL
Sbjct: 121 KIPPTTLMIDFLKASYGGCSDVILLEEDVNYNLRASSL 158
>gi|255634148|gb|ACU17437.1| unknown [Glycine max]
Length = 98
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/97 (81%), Positives = 84/97 (86%)
Query: 168 MNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
MNFNSRAASLLEVR+GGGYLLV+TDIAARG DLPE +HIYNFDLPR+AIDYLHRAGRT R
Sbjct: 1 MNFNSRAASLLEVRKGGGYLLVATDIAARGFDLPEMSHIYNFDLPRTAIDYLHRAGRTCR 60
Query: 228 KPFSDEKWTVTSIITSEELFVLQRYENELKFKSEELT 264
KPFSD TVTSII +E FVLQRYENEL F EEL
Sbjct: 61 KPFSDINCTVTSIIVPDERFVLQRYENELMFNCEELV 97
>gi|299117280|emb|CBN75240.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 465
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 149/329 (45%), Gaps = 82/329 (24%)
Query: 3 SLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSS-------------- 48
SL +L+ ++ +V +V+DEVD S +SL +LLA S
Sbjct: 144 SLTRLVTTGAVRVNAVSYVVVDEVDACLLSEGTRASLHELLARSLSPTHADEDEGEDEEG 203
Query: 49 ----------------------CNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHV 86
+RQTVFASA++PQH F+ C+Q++WT ++ VHV V
Sbjct: 204 AARLAEVGAGRVTGAAAPVNRKLRDRQTVFASATVPQHNHFIRQCVQKQWTLTEPVHVQV 263
Query: 87 NAIKPLPSCLHHRFVICGKKMKYQTL------LSLIQSDAPESGIIFVGEQS-------- 132
+A + +P CL H +V+C + K L L + P GI +++
Sbjct: 264 HAKEAMPPCLSHYYVVCPPEKKLAVLRTDTRGLVFALATKPLEGIAASLDKALGGRGSGG 323
Query: 133 ----------------EKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+++K P L +FL +E+ N+RA +
Sbjct: 324 GGGGERGGREQQQQQQQQAKGWDEQPPQPPLAEFL-------------RQELGLNARADA 370
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ R+G LLVSTD+AARG+D+PE TH++N DLP Y+HR GR GR +
Sbjct: 371 MSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPLDGEGYVHRGGRAGRLGRPGK--- 427
Query: 237 VTSIITSEELFVLQRYENELKFKSEELTL 265
V S++T ++ FV++R N + +++ L
Sbjct: 428 VISLVTPQQEFVIRRLGNGIGVDIKKINL 456
>gi|357012189|ref|ZP_09077188.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 474
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 136/266 (51%), Gaps = 28/266 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G + +L++ KL ++ +V+DEVD +F ++ S++ + A + +RQ +F SA+
Sbjct: 130 GRVQELVKLRKLKLHGIRTVVVDEVDQVF----ELGSMQDVEALFKGMLRDRQLLFFSAT 185
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P L + I +W + + V+V VN + L H + +C ++ K TL +++
Sbjct: 186 FPPP---LQDVID-RWMR-EPVYVRVNPAQRTSETLEHLYFVCQERDKIDTLRRIVRLYN 240
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFL-SNSYKGSSDVLLLEEEMNFNSRAASLLE 179
P++ I+FV E + + L V+ L +S+K RA ++
Sbjct: 241 PKAAIVFVNETDDIGEAVAKLQHVGLSVEGLYGDSFK--------------QERAKAMQA 286
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R G LL++TD+AARG+DLP+ TH+ N D P A Y+HR GRTGR K T S
Sbjct: 287 FRAGKFQLLLATDVAARGLDLPQVTHVINLDPPIDADHYVHRVGRTGR---MGRKGTAVS 343
Query: 240 IITSEELFVLQRYENELKFKSEELTL 265
IIT E F++ ++ L + ++ T+
Sbjct: 344 IITPREQFIIDKFSKALGIEIKQRTM 369
>gi|452821299|gb|EME28331.1| DEAD box ATP-dependent RNA helicase, putative [Galdieria
sulphuraria]
Length = 430
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 129/260 (49%), Gaps = 23/260 (8%)
Query: 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQ 74
L+ V+ +V+DE D F S S + +L S+S RQ +F+SA++ Q + FL+ C QQ
Sbjct: 182 LDRVRYIVLDEFDDYFIGSSWRSKILGMLPSHS----RQIIFSSATLQQCQHFLYQCRQQ 237
Query: 75 KWTKSD-VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSE 133
KWTK D + ++H++ + +P +H+ +V+ K + Q +++ + I+F+ E S
Sbjct: 238 KWTKQDGLEYIHIDKTEWMPKVVHYYYVLKKKDDRIQLFVNIWRQQKANKAIVFIREDSM 297
Query: 134 KSKKAGNAPSTTLLVDFLSNSYKGSSDV--LLLEEEMNFNSRAASLLEVRQGGGYLLVST 191
S A L ++ + + ++ L L ++ SR + +LL+ T
Sbjct: 298 LSHTAW-----LLQEEWKRQTLEKEKNISFLWLSANADWKSRQRVMTTFCNSDAHLLLIT 352
Query: 192 DIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW----TVTSIITSEELF 247
RG+D+PE T +YN + +Y+HRAGR+ R W V + + +ELF
Sbjct: 353 GQLMRGLDIPEVTQVYNLEWMDGVEEYVHRAGRSAR-------WLREGLVLNFVKDKELF 405
Query: 248 VLQRYENELKFKSEELTLQT 267
L+R N+L E LQ
Sbjct: 406 ALERVSNQLNIPFVEWPLQV 425
>gi|11385606|gb|AAG34884.1|AF261029_1 putative chloroplast RNA helicase VDL' isoform 6 [Nicotiana
tabacum]
Length = 294
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 58/66 (87%)
Query: 198 IDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYENELK 257
+DLPETTHIYNFD+P+ A++YLHRAGRTGRKPFSD+K VTSIIT EE FVLQR+ENEL
Sbjct: 227 VDLPETTHIYNFDIPKDAVNYLHRAGRTGRKPFSDKKCFVTSIITVEERFVLQRFENELM 286
Query: 258 FKSEEL 263
F E+L
Sbjct: 287 FCCEQL 292
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 25/28 (89%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDF 28
MGSLCQ++EKHI KL+S QVLV+DEVD
Sbjct: 202 MGSLCQMLEKHILKLDSCQVLVVDEVDL 229
>gi|337750837|ref|YP_004644999.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|336302026|gb|AEI45129.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus KNP414]
Length = 433
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 28/262 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G + +L++ KL ++ +V+DEVD +F ++ S++ + A + +RQ +F SA+
Sbjct: 132 GRVQELVKLRKLKLHGIKTVVVDEVDQVF----ELGSMQDVEALFKGMLRDRQLLFFSAT 187
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P + +W +D +V V + L H + +C ++ K TL L++
Sbjct: 188 FPPP----IQAVIDRWM-NDPEYVRVKPAQRTSETLEHVYFVCEEREKIDTLRKLVRLYN 242
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFL-SNSYKGSSDVLLLEEEMNFNSRAASLLE 179
P + I+F+ E + L V+ L +S+K RA ++
Sbjct: 243 PRAAIVFINETDNIGEAVAKLQYAGLSVEGLYGDSFK--------------QERARTMQG 288
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R G LL++TD+AARG+DLP+ TH+ N D A Y+HR GRTGR K S
Sbjct: 289 FRAGRFQLLLATDVAARGLDLPQVTHVINLDPALDADHYVHRVGRTGR---MGRKGMAVS 345
Query: 240 IITSEELFVLQRYENELKFKSE 261
I+T + F+L+++E L E
Sbjct: 346 IVTPRQQFILEKFEKALGITIE 367
>gi|451822522|ref|YP_007458723.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451788501|gb|AGF59469.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 525
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 135/256 (52%), Gaps = 23/256 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI++ L+S++ LV+DE D + N + ++++L+ + RQT+ SA++
Sbjct: 131 GRMLDLIKRKCLHLDSIEFLVLDEADEMLNMG-FIDDIEEILSH--TPTERQTLLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L +++ K+D HV + S + + + K + + L L+ SD P
Sbjct: 188 PDQIKKL----AKRYMKADAQHVSIKKSSLTVSKIEQSYFMINNKHRLEALCRLLDSDNP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
S IIF ++K+ + L+ + S Y V + +M R +L + +
Sbjct: 244 SSAIIFC-----RTKRGVDE----LVQELQSKGYM----VEGMHGDMTQAHRLTTLNKFK 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G LL++TD+AARGID+ TH++N+DLP+ Y+HR GRTGR +++ T S++
Sbjct: 291 EGTLSLLIATDVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGR---ANKSGTAYSLV 347
Query: 242 TSEELFVLQRYENELK 257
T ++ +L++ +N K
Sbjct: 348 TPKDFAMLKQIQNVTK 363
>gi|219112265|ref|XP_002177884.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410769|gb|EEC50698.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 623
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 154/355 (43%), Gaps = 109/355 (30%)
Query: 4 LCQLIE-KHIFKLESVQVLVIDEVDF-LFNSSKQVSS------LKKLLASYSS------- 48
LC +++ I + SV+ +V+DEVD L N++ ++S L +LL+ Y S
Sbjct: 277 LCDMVKLGGIKRYNSVKFIVVDEVDACLLNNAGSLTSNLASSTLHELLSKYLSPTYDDGS 336
Query: 49 -------------------------CNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVH 83
+ RQT+FASA+IPQHR FL C Q +WT + H
Sbjct: 337 ANEADDNVLRSVKTSTKTATSTRPLSSQRQTIFASATIPQHRHFLKQCAQNQWTLREPTH 396
Query: 84 VHVNAIKP----LPSCLHHRFVIC-GKKMKYQTLLSLIQS-------DAPESGIIFVGEQ 131
V ++P LP+ L H + +C K TL L+ + P+ ++F +
Sbjct: 397 V---CLRPGEQLLPATLEHSYAVCRSTDQKLATLRRLVTKIYAKSVIEPPKKVLVFSDAR 453
Query: 132 SEKSKKAGNAPSTTLLVDFLSNSYKGS----------------SDVLLLEEEMNFNSRAA 175
+ + L+N +G + V +L E + + RAA
Sbjct: 454 RPLEE----------MAQILANDIEGGMLWKDGYGKEQERDVRAVVAVLRYEDSLSQRAA 503
Query: 176 SLLEVRQGGGY------------------------LLVSTDIAARGIDLPETTHIYNFDL 211
++ R G GY +L STD+AARG+D+ + +H+ +FDL
Sbjct: 504 AIDSFR-GDGYTMASGASQTYTSRDNDSDTAPSLRVLFSTDLAARGLDIADISHVIHFDL 562
Query: 212 PRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYENELKFKSEELTLQ 266
P A Y+HRAGRTGR S + V II+ ++ FVL R N+L ++ + Q
Sbjct: 563 PPDADTYVHRAGRTGRFGRSGQ---VLCIISPDQEFVLTRLTNKLNVDTKCIARQ 614
>gi|379723868|ref|YP_005315999.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|378572540|gb|AFC32850.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
Length = 510
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 127/266 (47%), Gaps = 28/266 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G + +L++ KL ++ +V+DEVD +F ++ S++ + A + +RQ +F SA+
Sbjct: 133 GRVQELVKLRKLKLHGIKTVVVDEVDQVF----ELGSMQDVEALFKGMLRDRQLLFFSAT 188
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P + +W +D +V V + L H + +C ++ K TL L++
Sbjct: 189 FPPP----IQAVIDRWM-NDPEYVRVKPAQRTSETLEHVYFVCEEREKIDTLRKLVRLYN 243
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFL-SNSYKGSSDVLLLEEEMNFNSRAASLLE 179
P + I+F+ E + L V+ L +S+K RA ++
Sbjct: 244 PRAAIVFINETDNIGEAVAKLQYAGLSVEGLYGDSFK--------------QERARTMQG 289
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R G LL++TD+AARG+DLP+ TH+ N D A Y+HR GRTGR K S
Sbjct: 290 FRAGRFQLLLATDVAARGLDLPQVTHVINLDPALDADHYVHRVGRTGR---MGRKGMAVS 346
Query: 240 IITSEELFVLQRYENELKFKSEELTL 265
I+T + F+L+++E L E +
Sbjct: 347 IVTPRQQFILEKFEKALGITIERRVM 372
>gi|150017770|ref|YP_001310024.1| DEAD/DEAH box helicase [Clostridium beijerinckii NCIMB 8052]
gi|149904235|gb|ABR35068.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
NCIMB 8052]
Length = 524
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 131/259 (50%), Gaps = 25/259 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI + + L S++ LV+DE D + N + +++++ + S +RQT+ SA++
Sbjct: 131 GRVLDLIRRKVLNLGSIKFLVLDEADEMLNMG-FIDDIEEIIKN--SNQDRQTMLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + L +++ KS+ H+ + + + + K +++TL ++ D P
Sbjct: 188 PEEIKRL----AKRYMKSETKHIAILKNAMTVATVDQYYYEIKNKDRFETLCRILDVDEP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
S IIF K+K+ VD L +G + +MN N R +L +
Sbjct: 244 TSAIIFC-----KTKRN---------VDELVEGLQGRGYTAEGMHGDMNQNQRINTLRKF 289
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G L++TD+AARGID+ TH+ N+DLP+ Y+HR GRTGR ++ K ++
Sbjct: 290 KEGSLEFLIATDVAARGIDVENVTHVINYDLPQDVESYVHRIGRTGR---ANRKGVAYTL 346
Query: 241 ITSEELFVLQRYENELKFK 259
+T+ E L+ E K K
Sbjct: 347 VTAREYMSLKHIEKVTKSK 365
>gi|433653854|ref|YP_007297562.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292043|gb|AGB17865.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 514
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 132/264 (50%), Gaps = 25/264 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI++++ L+SV+ LVIDE D + + + +K+++ + RQT+ SA++
Sbjct: 128 GRVLDLIKRNVLDLKSVKYLVIDEADEMLDMG-FIDDIKEIINH--TNEERQTMMFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L +K+ KSD + + S + H + + ++++L ++ D P
Sbjct: 185 PDEIKSL----AKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCKILDVDEP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
S IIF + E + N S V+ + +M+ N R +L + +
Sbjct: 241 SSTIIFCKTKKEVDELTENMQSRGYNVEGMHG-------------DMSQNQRINTLRKFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G LV+TD+AARGID+ TH+ N++LP+ Y+HR GRTGR S +T ++
Sbjct: 288 EGILDFLVATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYT---LV 344
Query: 242 TSEELFVLQRYE--NELKFKSEEL 263
TS E L+R E K K +EL
Sbjct: 345 TSREYPALKRIEKATRCKIKRKEL 368
>gi|298291343|ref|YP_003693282.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
gi|296927854|gb|ADH88663.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
Length = 499
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 128/261 (49%), Gaps = 40/261 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L +E+ L +++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 131 GRLLDHVERGRLLLSGIEILVIDEADRMLDMGFIPDIERVCKLVPF-----TRQTLFFSA 185
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTL 112
++P +FL N +Q + ++ ++ V CGK+ K +TL
Sbjct: 186 TMPPEIQRLVAQFLSNPVQVEASRPSSTAANITQF----------LVACGKEDFAKRETL 235
Query: 113 LSLIQS-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNF 170
LI S D ++GIIF +SE V + S K +V+ L +M+
Sbjct: 236 RELINSADNLQNGIIFCNRKSE--------------VAVVHKSLKRHGFNVVALHGDMDQ 281
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
SR +L + R G LLV++D+AARG+D+P +H++N+D P A DY+HR GRTGR
Sbjct: 282 RSRMQALDQFRTGEANLLVASDVAARGLDIPAVSHVFNYDTPHHAEDYVHRIGRTGRAGR 341
Query: 231 SDEKWTVTSIITSEELFVLQR 251
S +T+ + ++ L +++
Sbjct: 342 SGAAFTLVTPADTKSLAAIEK 362
>gi|386726622|ref|YP_006192948.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|384093747|gb|AFH65183.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus K02]
Length = 479
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 125/262 (47%), Gaps = 28/262 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G + +L++ KL ++ +V+DEVD +F ++ S++ + A + +RQ +F SA+
Sbjct: 133 GRVQELVKLRKLKLHGIKTVVVDEVDQVF----ELGSMQDVEALFKGMLRDRQLLFFSAT 188
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P + +W +D +V V + L H + +C ++ K TL L++
Sbjct: 189 FPPP----IQAVIDRWM-NDPEYVRVKPAQRTSETLEHVYFVCEEREKIDTLRKLVRLYN 243
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFL-SNSYKGSSDVLLLEEEMNFNSRAASLLE 179
P + I+F+ E + L V+ L +S+K RA ++
Sbjct: 244 PRAAIVFINETDNIGEAVAKLQYAGLSVEGLYGDSFK--------------QERARTMQG 289
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R G LL++TD+AARG+ LP+ TH+ N D A Y+HR GRTGR K S
Sbjct: 290 FRAGRFQLLLATDVAARGLALPQVTHVINLDPALDADHYVHRVGRTGR---MGRKGMAVS 346
Query: 240 IITSEELFVLQRYENELKFKSE 261
I+T + F+L+++E L E
Sbjct: 347 IVTPRQQFILEKFEKALGITIE 368
>gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 514
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 135/267 (50%), Gaps = 25/267 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI++ I +L V+ LV+DE D + + + +K+++ + RQT+ SA++
Sbjct: 128 GRVLDLIKRDILRLNDVKYLVLDEADEMLDMG-FIDDIKEIINH--TNKERQTMMFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L +K+ KSD + + S + H + + ++++L ++ + P
Sbjct: 185 PDEIKNL----AKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRILDVEEP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
S IIF K+KK VD L+ + + +V + +M+ N R +L +
Sbjct: 241 SSTIIFC-----KTKKE---------VDELTENMQSRGYNVEGMHGDMSQNQRINTLRKF 286
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G LV+TD+AARGID+ TH+ N++LP+ Y+HR GRTGR S +T +
Sbjct: 287 KEGNLDFLVATDVAARGIDIENLTHVINYNLPQDVESYVHRIGRTGRANRSGVAYT---L 343
Query: 241 ITSEELFVLQRYENELKFKSEELTLQT 267
+TS E L+R E E K K L T
Sbjct: 344 VTSREYPALKRIERETKCKIRRKELPT 370
>gi|390449448|ref|ZP_10235054.1| DEAD/DEAH box helicase [Nitratireductor aquibiodomus RA22]
gi|389664141|gb|EIM75649.1| DEAD/DEAH box helicase [Nitratireductor aquibiodomus RA22]
Length = 470
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 114/232 (49%), Gaps = 29/232 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 131 GRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTLLSLI- 116
++P L Q + +V A + + RFV CG K K + L SLI
Sbjct: 186 TMPPEITKLTEQFLQAPVRVEVSRPATTA-----TNITQRFVKCGSKPWEKRERLRSLID 240
Query: 117 -QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
Q D ++ IIF +SE + TL + + Y D L +M+ +R
Sbjct: 241 SQGDTLKNAIIFCNRKSEVA---------TLFRSLVRHEY----DAGALHGDMDQRARMT 287
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L R+G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR
Sbjct: 288 MLENFRKGNLKLLVASDVAARGLDIPDVSHVFNFDIPTHADDYVHRIGRTGR 339
>gi|334138519|ref|ZP_08511937.1| putative DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus
sp. HGF7]
gi|333603930|gb|EGL15326.1| putative DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus
sp. HGF7]
Length = 388
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 124/265 (46%), Gaps = 32/265 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLF--NSSKQVSSLKKLLASYSSCNNRQTVFASA 59
G + +LI+ + V L++DEVD + S K+V S+ K L S Q++F SA
Sbjct: 131 GRINELIKARKLNVHHVSTLIVDEVDHVLELGSMKEVYSIFKALQRSS-----QSLFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQ 117
+IP I Q +D + +N + S L H C + K TL +I+
Sbjct: 186 TIPAE-------IGQAAENLMNDPAEIRINPDQRTASTLEHLAFNCEARNKIDTLRRIIR 238
Query: 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
P ++FV ++ S+ L V+ L E RA +
Sbjct: 239 LYEPPKAMVFVNATADVSEVVSKLQHLGLSVEALYG-------------EAGKQQRANVM 285
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
R+G LL++TD+AARG+D+ E TH+ N D+P +A YLHRAGRTGR S TV
Sbjct: 286 QSFREGKFQLLLATDVAARGLDIEEVTHVINLDMPLNAEYYLHRAGRTGRMGRS---GTV 342
Query: 238 TSIITSEELFVLQRYENELKFKSEE 262
SI+ +E F++ ++ L+ +E
Sbjct: 343 ISIVAPKERFIIDKFRKALRISIDE 367
>gi|188589982|ref|YP_001922621.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
Alaska E43]
gi|251781234|ref|ZP_04824150.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|188500263|gb|ACD53399.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
Alaska E43]
gi|243081681|gb|EES47742.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 526
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 129/253 (50%), Gaps = 25/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI + I KL +V LV+DE D + N + ++ ++++ + RQT+ SA++
Sbjct: 131 GRVLDLINRKILKLNTVDFLVLDEADEMLNMG-FIDDIETIISNTPA--ERQTLLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L + + K+D HV + S + + + K + + L L+ D P
Sbjct: 188 PAPIAKL----AKNYMKADAKHVAIKRSSLTVSKIEQNYFMINNKHRLEALCRLLDLDNP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLL-LEEEMNFNSRAASLLEV 180
S IIF ++KK VD L +G V+ + +M+ R +L +
Sbjct: 244 SSAIIFC-----RTKKG---------VDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKF 289
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G LL++TD+AARGID+ TH+ N+DLP+ Y+HR GRTGR ++ T S+
Sbjct: 290 KEGSLNLLIATDVAARGIDVDGITHVINYDLPQDVESYVHRIGRTGR---ANRTGTAYSL 346
Query: 241 ITSEELFVLQRYE 253
++ +EL +L++ +
Sbjct: 347 VSPKELGMLKQIQ 359
>gi|187933940|ref|YP_001887642.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
Eklund 17B]
gi|187722093|gb|ACD23314.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
Eklund 17B]
Length = 526
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 129/253 (50%), Gaps = 25/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI + I KL +V LV+DE D + N + ++ ++++ + RQT+ SA++
Sbjct: 131 GRVLDLINRKILKLNTVDFLVLDEADEMLNMG-FIEDIETIISNTPA--ERQTLLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L + + K+D HV + S + + + K + + L L+ D P
Sbjct: 188 PAPIAKL----AKNYMKADAKHVAIKRSSLTVSKIEQNYFMINNKHRLEALCRLLDLDNP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLL-LEEEMNFNSRAASLLEV 180
S IIF ++KK VD L +G V+ + +M+ R +L +
Sbjct: 244 SSAIIFC-----RTKKG---------VDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKF 289
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G LL++TD+AARGID+ TH+ N+DLP+ Y+HR GRTGR ++ T S+
Sbjct: 290 KEGSLNLLIATDVAARGIDVDGITHVINYDLPQDVESYVHRIGRTGR---ANRTGTAYSL 346
Query: 241 ITSEELFVLQRYE 253
++ +EL +L++ +
Sbjct: 347 VSPKELGMLKQIQ 359
>gi|333895980|ref|YP_004469854.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111245|gb|AEF16182.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 513
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 132/264 (50%), Gaps = 25/264 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI++++ L+SV+ LVIDE D + + + +K+++ + RQT+ SA++
Sbjct: 128 GRVLDLIKRNVLDLKSVRYLVIDEADEMMDMG-FIDDIKEIINH--TNKERQTMMFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L +K+ KSD + + S + H + + ++++L ++ + P
Sbjct: 185 PDEIKNL----AKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRILDVEEP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
S IIF + E + N S V+ + +M+ N R +L + +
Sbjct: 241 SSTIIFCKTKKEVDELTENMQSRGYNVEGMHG-------------DMSQNQRINTLRKFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G LV+TD+AARGID+ TH+ N++LP+ Y+HR GRTGR S +T ++
Sbjct: 288 EGILDFLVATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYT---LV 344
Query: 242 TSEELFVLQRYE--NELKFKSEEL 263
TS E L+R E K K +EL
Sbjct: 345 TSREYPALKRIEKATRCKIKRKEL 368
>gi|390933807|ref|YP_006391312.1| DEAD/DEAH box helicase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389569308|gb|AFK85713.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 513
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 132/264 (50%), Gaps = 25/264 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI++++ L+SV+ LVIDE D + + + +K+++ + RQT+ SA++
Sbjct: 128 GRVLDLIKRNVLDLKSVRYLVIDEADEMLDMG-FIDDIKEIINH--TNRERQTMMFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L +K+ KS+ + + S + H + + ++++L ++ D P
Sbjct: 185 PDEIKNL----AKKYMKSNAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRILDVDEP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
S IIF + E + N S V+ + +M+ N R +L + +
Sbjct: 241 SSTIIFCKTKKEVDELTENMQSRGYNVEGMHG-------------DMSQNQRINTLRKFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G LV+TD+AARGID+ TH+ N++LP+ Y+HR GRTGR S +T ++
Sbjct: 288 EGILDFLVATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYT---LV 344
Query: 242 TSEELFVLQRYE--NELKFKSEEL 263
TS E L+R E K K +EL
Sbjct: 345 TSREYPALKRIEKATRCKIKRKEL 368
>gi|89894520|ref|YP_518007.1| hypothetical protein DSY1774 [Desulfitobacterium hafniense Y51]
gi|89333968|dbj|BAE83563.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 424
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 128/262 (48%), Gaps = 34/262 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS- 60
G + +LI+K +S++ +V+DE D L + + + ++K +L ++ + Q + SA+
Sbjct: 118 GRILELIQKRKISAQSLKTIVLDEADQLLDE-RNIQTVKAVL--KTAYKDSQILLFSATL 174
Query: 61 ----IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
I Q FL + Q+ T V +P+ +H F +C ++ K + L L+
Sbjct: 175 SQDAIEQAAGFLKDPAVQRITMKATV---------VPTIIHQHF-MCEQRDKLELLRKLV 224
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ P +IF+ + E K V+ LS Y G V + N R A
Sbjct: 225 RHLEPGRALIFINKTEEIEK----------TVERLS--YHGLDAVAISGASQKENRRQA- 271
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ + R G LLV++D+AARG+D+ THI+N D+P YLHR GRTGR + +
Sbjct: 272 MADFRAGKTQLLVASDLAARGLDIKNITHIFNLDIPEEPQLYLHRVGRTGR---AGQSGV 328
Query: 237 VTSIITSEELFVLQRYENELKF 258
S++T EL +L + EN LK
Sbjct: 329 AVSLVTQRELPLLHKIENSLKI 350
>gi|219668951|ref|YP_002459386.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
gi|219539211|gb|ACL20950.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
DCB-2]
Length = 443
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 128/262 (48%), Gaps = 34/262 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS- 60
G + +LI+K +S++ +V+DE D L + + + ++K +L ++ + Q + SA+
Sbjct: 137 GRILELIQKRKISAQSLKTIVLDEADQLLDE-RNIQTVKAVL--KTAYKDSQILLFSATL 193
Query: 61 ----IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
I Q FL + Q+ T V +P+ +H F +C ++ K + L L+
Sbjct: 194 SQDAIEQAAGFLKDPAVQRITMKATV---------VPTIIHQHF-MCEQRDKLELLRKLV 243
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ P +IF+ + E K V+ LS Y G V + N R A
Sbjct: 244 RHLEPGRALIFINKTEEIEK----------TVERLS--YHGLDAVAISGASQKENRRQA- 290
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ + R G LLV++D+AARG+D+ THI+N D+P YLHR GRTGR + +
Sbjct: 291 MADFRAGKTQLLVASDLAARGLDIKNITHIFNLDIPEEPQLYLHRVGRTGR---AGQSGV 347
Query: 237 VTSIITSEELFVLQRYENELKF 258
S++T EL +L + EN LK
Sbjct: 348 AVSLVTQRELPLLHKIENSLKI 369
>gi|423074241|ref|ZP_17062973.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DP7]
gi|361854959|gb|EHL06986.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DP7]
Length = 443
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 128/262 (48%), Gaps = 34/262 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS- 60
G + +LI+K +S++ +V+DE D L + + + ++K +L ++ + Q + SA+
Sbjct: 137 GRILELIQKRKISAQSLKTIVLDEADQLLDE-RNIQTVKAVL--KTAYKDSQILLFSATL 193
Query: 61 ----IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
I Q FL + Q+ T V +P+ +H F +C ++ K + L L+
Sbjct: 194 SQDAIEQAAGFLKDPAVQRITMKATV---------VPTIIHQHF-MCEQRDKLELLRKLV 243
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ P +IF+ + E K V+ LS Y G V + N R A
Sbjct: 244 RHLEPGRALIFINKTEEIEK----------TVERLS--YHGLDAVAISGASQKENRRQA- 290
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ + R G LLV++D+AARG+D+ THI+N D+P YLHR GRTGR + +
Sbjct: 291 MADFRAGKTQLLVASDLAARGLDIKNITHIFNLDIPEEPQLYLHRVGRTGR---AGQSGV 347
Query: 237 VTSIITSEELFVLQRYENELKF 258
S++T EL +L + EN LK
Sbjct: 348 AVSLVTQRELPLLHKIENSLKI 369
>gi|302873473|ref|YP_003842106.1| DEAD/DEAH box helicase [Clostridium cellulovorans 743B]
gi|307688348|ref|ZP_07630794.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
cellulovorans 743B]
gi|302576330|gb|ADL50342.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
743B]
Length = 380
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 129/264 (48%), Gaps = 26/264 (9%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+G + LI+K K +V+ +VIDE D L + S + ++ ++ + + +RQ + SA+
Sbjct: 132 IGRVLDLIQKKKIKAHTVKTIVIDEADNLLSES-SLGTVNNIIKT--TMRDRQLMAFSAT 188
Query: 61 I-PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
I P+ +++ V +N + H +++C + K++ L LI +
Sbjct: 189 INPKTLDTAKALMKEPEVFKTDGKVAMNP------RISHEYIVCSHRDKFEILRKLIAAT 242
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E I+F+ + E L+ D L+ K + + + R ++
Sbjct: 243 KTERAIVFLNKNEE----------IQLITDKLNYHSKNAGGIYGAASK---EERKNTINS 289
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G LLVS+D++ARG+D+PE THI+N D P + DY HRAGRT R S T S
Sbjct: 290 FKSGKINLLVSSDLSARGLDVPEVTHIFNLDFPVNTNDYSHRAGRTARGNLS---GTCIS 346
Query: 240 IITSEELFVLQRYENELKFKSEEL 263
IIT +EL ++ YE E K E++
Sbjct: 347 IITEKELAAIRVYEREFNVKFEQI 370
>gi|331268828|ref|YP_004395320.1| DEAD/DEAH box helicase [Clostridium botulinum BKT015925]
gi|329125378|gb|AEB75323.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum BKT015925]
Length = 377
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 130/255 (50%), Gaps = 24/255 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +++ +V+DE D L + S +S +K ++ + + + Q + SA+I
Sbjct: 132 GRVFELIKKRKISAHTIKTIVLDEGDRLLDKS-NLSKVKDVIKT--TMRDTQLLLVSATI 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
Q R F + Q K V V V A + + H + C + K + L LI S P
Sbjct: 189 SQ-RTF---DVAQDIMKDPKV-VKVKASDLINPNISHMYFQCEARDKIEILRKLIASTKP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
I+F+ + +E +T+ L N+Y S + + R ++ +
Sbjct: 244 SRAIVFINKPTEID------ITTSKLQYHKINAYSISG-------KTSKEDRKKAIDGFK 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +L+++D+AARG+D+ THI+N DLP ++DYLHR GR GR +D+ T SI+
Sbjct: 291 HGKYQILIASDVAARGLDVENITHIFNLDLPSDSMDYLHRVGRCGR---ADKLGTAMSIV 347
Query: 242 TSEELFVLQRYENEL 256
T EL ++++YEN+
Sbjct: 348 TESELPLIKKYENKF 362
>gi|302874235|ref|YP_003842868.1| DEAD/DEAH box helicase [Clostridium cellulovorans 743B]
gi|307689501|ref|ZP_07631947.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
cellulovorans 743B]
gi|302577092|gb|ADL51104.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
743B]
Length = 536
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 132/259 (50%), Gaps = 25/259 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + + + E V+ LV+DE D + N + +++++ S + +RQT+ SA++
Sbjct: 132 GRVLDHLRRKSLNTEFVKFLVLDEADEMLNMG-FIDDIEEVMKSLNE--DRQTLLFSATM 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L +++ KSD + + S + + ++++L +I +D P
Sbjct: 189 PDAIKRLS----KRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESLCRIIDADEP 244
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLL-LEEEMNFNSRAASLLEV 180
E+ IIF K+KK VD L +S + V+ + +MN N R +L +
Sbjct: 245 EAAIIFC-----KTKKG---------VDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKF 290
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++ LV+TD+AARGID+ TH+ N+DLP+ A Y+HR GRTGR ++++ ++
Sbjct: 291 KESNLDFLVATDVAARGIDVENVTHVINYDLPQDAESYVHRIGRTGR---ANKEGKAYTL 347
Query: 241 ITSEELFVLQRYENELKFK 259
+T E VL++ E K K
Sbjct: 348 VTPREYIVLKQIEKTTKSK 366
>gi|429765111|ref|ZP_19297415.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
celatum DSM 1785]
gi|429186973|gb|EKY27897.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
celatum DSM 1785]
Length = 542
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 128/266 (48%), Gaps = 23/266 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + L SV+ LV+DE D + N + +++++ S RQT+ SA++
Sbjct: 136 GRVLDHIRRGNLPLSSVEFLVLDEADEMLNMG-FIDDMEEIMKSIPE--ERQTLLFSATM 192
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L +K+ K D HV + + S + F + + L LI D P
Sbjct: 193 PPQIKKL----SKKYLKDDAKHVAIAKKEMTGSTIKQNFFEVHNSQRLEALCRLIDFDNP 248
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+GIIF ++KK + L+ + Y V + +M+ R +L + +
Sbjct: 249 TAGIIFC-----RTKKGVD----DLVAAMQARGYM----VEGMHGDMSQVQRMKTLAKFK 295
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G LV+TD+AARGID+ TH++N++LP+ Y+HR GRTGR + + T SII
Sbjct: 296 NGSLKFLVATDVAARGIDVDGVTHVFNYELPQDVESYVHRIGRTGR---AGREGTAYSII 352
Query: 242 TSEELFVLQRYENELKFKSEELTLQT 267
T E L++ +N K E+ + T
Sbjct: 353 TPREFGFLKQIKNVTKSNIEKRPVPT 378
>gi|416351785|ref|ZP_11681203.1| ATP-dependent RNA helicase [Clostridium botulinum C str. Stockholm]
gi|338195927|gb|EGO88157.1| ATP-dependent RNA helicase [Clostridium botulinum C str. Stockholm]
Length = 377
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 131/255 (51%), Gaps = 24/255 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +++ +V+DE D L + + + +K ++ + + + Q + SA+I
Sbjct: 132 GRVFELIKKRKISAHTIKTIVLDEGDRLLDKN-NLPKVKDVIKT--TMRDTQLILVSATI 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
Q R F I Q K D V V A + + H + C + K + L LI S P
Sbjct: 189 SQ-RTF---DIAQTIMK-DPKFVKVKASDLINPNISHMYFQCEARDKIEILRKLIASTKP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I+F+ + +E +T+ L N+Y S + + R ++ +
Sbjct: 244 DRAIVFINKPTEID------VTTSKLQYHKINAYSISG-------KTSKEDRKKAIDGFK 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +L+++D+AARG+D+ THI+N DLP ++DYLHR GR GR +D+ T SI+
Sbjct: 291 RGKYQILIASDVAARGLDVTNITHIFNLDLPSDSMDYLHRVGRCGR---ADKLGTAMSIV 347
Query: 242 TSEELFVLQRYENEL 256
T +L ++++YEN+
Sbjct: 348 TESDLPLIKKYENKF 362
>gi|150019837|ref|YP_001312091.1| DEAD/DEAH box helicase [Clostridium beijerinckii NCIMB 8052]
gi|149906302|gb|ABR37135.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
NCIMB 8052]
Length = 525
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+++ LES++ LV+DE D + N + ++++L+ S RQT+ SA++
Sbjct: 131 GRILDLVKRKCLHLESIEFLVLDEADEMLNMG-FIDDIQEILSHTPS--ERQTLLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L +K+ K D V + S + + + K + + L L+ D P
Sbjct: 188 PDPIAKL----AKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKHRLEALCRLLDLDNP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
S IIF ++K+ + L+ + S Y V + +M R +L + +
Sbjct: 244 SSAIIFC-----RTKRGVDE----LVQELQSKGYM----VEGMHGDMTQAHRLTTLNKFK 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G LL++TD+AARGID+ TH++N+DLP+ Y+HR GRTGR +++ T S++
Sbjct: 291 EGTLNLLIATDVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGR---ANKSGTAYSLV 347
Query: 242 TSEELFVLQRYENELK 257
T ++ +L++ +N K
Sbjct: 348 TPKDFSMLKQIQNVTK 363
>gi|313885567|ref|ZP_07819317.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619297|gb|EFR30736.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
ACS-139-V-Col8]
Length = 526
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 119/243 (48%), Gaps = 23/243 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ + I ++ L++DE D + N + +K ++ S RQT+ SA++
Sbjct: 129 GRLLDLMRRQIIDTSYLKTLIMDEADEMLNMGF-IEDIKAIVEQTPSS--RQTLMFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + N QQ T+ V + A + FV C K+ L ++ ++P
Sbjct: 186 PKS---VQNLAQQFLTQP--AEVKIEAKHLTADLIDQYFVKCRDSEKFDILTRMLDIESP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ IIF ++KK + L S +G D L+ ++ R + E +
Sbjct: 241 DKAIIFA-----RTKKRVDEIGRGL-------SLRGY-DAELIHGDVTQQKRTQVMNEFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
QG LLV+TD+AARGID+ TH+YN+D+P+ Y+HR GRTGR +E +VT ++
Sbjct: 288 QGRLELLVATDVAARGIDVSGVTHVYNYDIPQDPESYVHRIGRTGRA--GNEGQSVTFVM 345
Query: 242 TSE 244
SE
Sbjct: 346 ESE 348
>gi|94265120|ref|ZP_01288885.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
MLMS-1]
gi|93454407|gb|EAT04705.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
MLMS-1]
Length = 369
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 131/266 (49%), Gaps = 27/266 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L ++ L +V++LV+DE D +F+ + ++KKLL + RQ + SA++
Sbjct: 129 GRLLDHLDSRDVNLGAVEMLVLDEADMMFDMGF-MPAIKKLLKYLPA--KRQNLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R L + I + D V +N +P + + H+ K+ K L ++Q A
Sbjct: 186 PAEIRHLADSILK-----DPARVQINHTQPT-ALVAHKLYRVEKQGKGALLKQVMQESAF 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
S ++F + K A N K + L+ M+ N R A++ +
Sbjct: 240 SSALVFTRTKHAAKKLA-------------LNLEKAGHRAVALQGNMSQNKRKAAMEGFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
QG ++V+TDIAARGID+ +H+ N+D+P + Y HR GRTGR + E +T
Sbjct: 287 QGRFNIMVATDIAARGIDVAGISHVINYDMPATVEAYTHRIGRTGRAERNGEAYTFA--- 343
Query: 242 TSEELFVLQRYENELKFKSEELTLQT 267
T+E+ ++++ E + S+ +TL+T
Sbjct: 344 TAEDKVIVRQIERAI--GSQMITLET 367
>gi|28211493|ref|NP_782437.1| ATP-dependent RNA helicase [Clostridium tetani E88]
gi|28203934|gb|AAO36374.1| ATP-dependent RNA helicase [Clostridium tetani E88]
Length = 386
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 129/264 (48%), Gaps = 38/264 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +++ +V+DE D L + S +SS+K ++ + + +RQ + SA+I
Sbjct: 132 GRILELIKKKKISAHTIKTIVVDEGDKLLDHS-NLSSIKDVIKT--TMRDRQLMVFSATI 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHV-NAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+ N + ++ + NAI P + H + I ++ K + L L+ S
Sbjct: 189 NEKTL---NVAKGLMKDAEFIKAKSENAINP---NITHMYFISDQRDKIEVLRKLVASIN 242
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFL------SNSYKGSSDVLLLEEEMNFNSRA 174
PE I+F+ + E T ++ L + GSS + R
Sbjct: 243 PEKAIVFINKSDE----------TEIITAKLKYHKIKAEGIHGSS---------SKKDRQ 283
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEK 234
+L R G LLV++DIAARG+D+ +HI+N DLP +YLHR GRT R + E
Sbjct: 284 KALEGFRSGKLQLLVASDIAARGLDIKNVSHIFNLDLPSDPKEYLHRVGRTSR---TGET 340
Query: 235 WTVTSIITSEELFVLQRYENELKF 258
T SI+T +EL ++++YE + K
Sbjct: 341 GTAISIVTDKELSLIKKYERDFKI 364
>gi|169347296|ref|ZP_02866234.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552]
gi|169293913|gb|EDS76046.1| DEAD/DEAH box helicase [Clostridium spiroforme DSM 1552]
Length = 531
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 132/253 (52%), Gaps = 25/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+ + + K ++V+ +V+DE D + N V ++ +L RQT+ SA++
Sbjct: 132 GRVMDLMRRKVLKFDNVKYVVLDEADEMLNMG-FVEDIETILEKVDDA--RQTILFSATM 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I Q + D HV V + + + + + K +++TL LI
Sbjct: 189 PAGIK----KIAQNYMHDDFKHVAVLSKQTTATSVKQFYYEVKPKDRFETLCRLIDVANI 244
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
++GIIF ++K++ VD ++ + S+ +V + ++N N R +L +
Sbjct: 245 KTGIIFC-----RTKRS---------VDEVTEQMQQSNYNVEAMHGDLNQNHRMNTLRKF 290
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G LV+TD+AARGID+ TH+ N++LP+ Y+HR GRTGR +D++ SI
Sbjct: 291 KKGTINFLVATDVAARGIDVENVTHVINYELPQDIESYVHRIGRTGR---ADKEGLAYSI 347
Query: 241 ITSEELFVLQRYE 253
I+ +E+ L++ E
Sbjct: 348 ISPKEVSFLKQIE 360
>gi|410723166|ref|ZP_11362411.1| DNA/RNA helicase, superfamily II [Clostridium sp. Maddingley
MBC34-26]
gi|410603370|gb|EKQ57804.1| DNA/RNA helicase, superfamily II [Clostridium sp. Maddingley
MBC34-26]
Length = 526
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 130/256 (50%), Gaps = 23/256 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI++ L+S++ LV+DE D + N + ++++L+ S RQT+ SA++
Sbjct: 131 GRILDLIKRKCLHLDSIEFLVLDEADEMLNMG-FIDDMEEILSHTPS--ERQTLLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L +++ K D V + S + + + K + + L L+ D P
Sbjct: 188 PDPIAKL----AKRYMKPDAKLVSIKKSSLTVSKIEQSYFMINNKHRLEALCRLLDLDNP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
S IIF ++K+ + L+ + S Y V + +M R +L + +
Sbjct: 244 SSAIIFC-----RTKRGVDE----LVQELQSKGYM----VEGMHGDMTQAHRLTTLNKFK 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G LL++TD+AARGID+ TH++N+DLP+ Y+HR GRTGR +D+ T S++
Sbjct: 291 EGTLNLLIATDVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGR---ADKSGTAYSLV 347
Query: 242 TSEELFVLQRYENELK 257
T + +L++ +N K
Sbjct: 348 TPKYFSMLKQIQNVTK 363
>gi|94265968|ref|ZP_01289692.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
MLMS-1]
gi|93453471|gb|EAT03884.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
MLMS-1]
Length = 369
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 130/266 (48%), Gaps = 27/266 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L ++ L +V++LV+DE D +F+ + ++KKLL + RQ + SA++
Sbjct: 129 GRLLDHLDSRDVNLGAVEMLVLDEADMMFDMGF-MPAIKKLLKYLPA--KRQNLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R L + I + D V +N +P + + H+ K+ K L ++Q A
Sbjct: 186 PAEIRHLADSILK-----DPARVQINHTQPT-ALVAHKLYRVEKQGKGALLKQVMQESAF 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
S ++F + K A N K + L+ M+ N R A++ +
Sbjct: 240 SSALVFTRTKHAAKKLA-------------LNLEKAGHRAVALQGNMSQNKRKAAMEGFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
QG ++V+TDIAARGID+ +H+ N+D+P + Y HR GRTGR + E +T
Sbjct: 287 QGRFNIMVATDIAARGIDVAGISHVINYDMPATVEAYTHRIGRTGRAERNGEAYTFA--- 343
Query: 242 TSEELFVLQRYENELKFKSEELTLQT 267
T+E+ ++++ E + S +TL+T
Sbjct: 344 TAEDKVIVRQIERAI--GSRMITLET 367
>gi|407976248|ref|ZP_11157149.1| DEAD/DEAH box helicase [Nitratireductor indicus C115]
gi|407428423|gb|EKF41106.1| DEAD/DEAH box helicase [Nitratireductor indicus C115]
Length = 488
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 116/244 (47%), Gaps = 29/244 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V + VIDE D + + + + KL+ RQT+F SA
Sbjct: 142 GRLLDHFERGKLLLTGVDIFVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 196
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLI- 116
++P L Q V V V + + RFV CG K K L LI
Sbjct: 197 TMPPEITKLTEQFLQA-----PVRVEVARPATTNTSITQRFVKCGSKPWAKRARLRELID 251
Query: 117 -QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ D ++ IIF +SE + TL + + Y D L +M+ +R A
Sbjct: 252 AEGDTLKNAIIFCNRKSEVA---------TLFRSLVRHEY----DAGALHGDMDQRARMA 298
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L R+G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S E +
Sbjct: 299 MLENFRKGKLKLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGEAF 358
Query: 236 TVTS 239
T+ +
Sbjct: 359 TLVT 362
>gi|220927583|ref|YP_002504492.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
gi|219997911|gb|ACL74512.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
H10]
Length = 437
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 131/272 (48%), Gaps = 52/272 (19%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +++ ++IDE D L + + ++K ++ + + RQ V SA+I
Sbjct: 132 GRILELIQKRKISAHTIKTIIIDEADRLLDDY-NLDNIKAIIKT--TLKERQIVMCSATI 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
++ + + K +V + A +P + H + + ++ K L L++ P
Sbjct: 189 --SKKTVERAMP--LMKEPLV-IESKADMGVPDAIEHLYFVSEQRDKIDVLRKLVRMINP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF----------- 170
+ I F + S D+L+ EE++ +
Sbjct: 244 KKAIAF---------------------------FANSEDILVSEEKLRYHKLKAGGIHGS 276
Query: 171 ---NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ R ++ + + G LL+++DIAARG+D+ + THI+N ++P ++DYLHRAGRTGR
Sbjct: 277 NIKSDRKKTMDDFKNGRLQLLIASDIAARGLDIEDVTHIFNVNIPERSMDYLHRAGRTGR 336
Query: 228 KPFSDEKWTVTSIITSEELFVLQRYENELKFK 259
+ + SI+T +E+ ++++E ELK K
Sbjct: 337 ---NGKPGVAISIVTEKEIEFIRKFEKELKIK 365
>gi|403387074|ref|ZP_10929131.1| ATP-dependent RNA helicase (superfamily II) [Clostridium sp. JC122]
Length = 546
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 135/273 (49%), Gaps = 37/273 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS------KQVSSLKKLLASYSSCNNRQTV 55
G + I + KL+ + LV+DE D + N +S+LKK RQT+
Sbjct: 131 GRILYHINRKTLKLDHAKFLVLDEADEMLNMGFIEDIELIISNLKK---------ERQTL 181
Query: 56 FASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSL 115
SA++P+ + + + + KSD H+ + S + + G+K K + L +
Sbjct: 182 LFSATMPKAIK----SLAKNYMKSDAKHIAIAKQSLTVSKIKQFYFEVGQKDKLEALCRI 237
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLL-LEEEMNFNSRA 174
+ DAP+S I+F K+K+ VD L ++ + ++ + +M R
Sbjct: 238 LDVDAPKSAILFC-----KTKRG---------VDELVSALQSKGYIVEGMHGDMKQLQRL 283
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEK 234
+L + + G L++TD+AARGID+ + TH+ N+DLP+ Y+HR GRTGR ++++
Sbjct: 284 NTLKKFKTGNLNYLIATDVAARGIDVEDITHVINYDLPQDTESYVHRIGRTGR---ANKE 340
Query: 235 WTVTSIITSEELFVLQRYENELKFKSEELTLQT 267
T S + E+ ++++ EN K K E+ L T
Sbjct: 341 GTAYSFASRREMSMIRQIENVTKSKMEKKQLPT 373
>gi|386813381|ref|ZP_10100605.1| DEAD/DEAH box helicase [planctomycete KSU-1]
gi|386402878|dbj|GAB63486.1| DEAD/DEAH box helicase [planctomycete KSU-1]
Length = 441
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 132/266 (49%), Gaps = 27/266 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + L ++VLV+DE D +F+ + ++K+L + RQT+F SA++
Sbjct: 129 GRLLDHIRQGTIDLSRLEVLVLDEADRMFDMGF-LPDIRKILKHLPA--QRQTLFFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR H+ + T V VN P+ + + H + +K L++L+
Sbjct: 186 PDDIRRLAHDILHTPAT------VQVNHTMPV-TTISHALYPVEQHLKTPLLMALLNHTD 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
ES ++F ++K+ + Y +S L+ ++ + R A+L
Sbjct: 239 MESVLVFT-RTKHRAKQVAH--------QLGRAGYSSTS----LQGNLSQSQRQAALNGF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R G +LV+TDIAARGID+ +H+ N+D+P ++ Y HR GRTGR + + +T +
Sbjct: 286 RNGSFKILVATDIAARGIDVSRISHVINYDMPDTSDAYTHRIGRTGRAAKTGDAFT---L 342
Query: 241 ITSEELFVLQRYENELKFKSEELTLQ 266
IT E+ +++ EN L + E TLQ
Sbjct: 343 ITREDAQMVRAIENVLGEELERCTLQ 368
>gi|253682151|ref|ZP_04862948.1| ATP-dependent RNA helicase [Clostridium botulinum D str. 1873]
gi|253561863|gb|EES91315.1| ATP-dependent RNA helicase [Clostridium botulinum D str. 1873]
Length = 377
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 128/255 (50%), Gaps = 24/255 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +++ +V+DE D L + + + +K ++ + + + Q + SA+I
Sbjct: 132 GRVFELIKKRKISAHTIKTIVLDEGDRLLDKN-NLPKVKDVIKT--TMRDTQLILVSATI 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
Q + I + D V V A + + H + C + K + L LI S P
Sbjct: 189 SQRTFDVAQVIMK-----DPEFVKVKASDLINPNISHMYFQCEARDKIEILRKLIASTKP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
I+F+ + +E +T+ L N+Y S + + R ++ +
Sbjct: 244 NRAIVFINKPTEID------VTTSKLQYHKINAYSISG-------KTSKEDRKKAIDGFK 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +L+++D+AARG+D+ THI+N DLP ++DYLHR GR GR +D+ T SI+
Sbjct: 291 RGKYQILIASDVAARGLDVTNITHIFNLDLPSDSMDYLHRVGRCGR---ADKLGTAMSIV 347
Query: 242 TSEELFVLQRYENEL 256
T +L ++++YEN+
Sbjct: 348 TESDLPLIKKYENKF 362
>gi|354584867|ref|ZP_09003759.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353191418|gb|EHB56925.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 447
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 127/265 (47%), Gaps = 26/265 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LIE K+ V +VIDEVD +F S S ++++L S+ +RQ VF SA++
Sbjct: 131 GRIRELIEIRKLKMHQVTTIVIDEVDQVFQSGG-ASDVERIL--RSALRDRQLVFLSATV 187
Query: 62 -PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P+ + Q V + ++ + PS L H + + ++ K L +++
Sbjct: 188 GPETAELAKKEMDQP------VEIGIDPERRTPSGLEHYYFVSEERDKLDMLRRIVRHYD 241
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE ++FV NA V+ N Y G + L + +R+ L
Sbjct: 242 PERALVFV-----------NATEDLAEVEAKLN-YLGLNAAALYGDADKL-TRSRVLNAF 288
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R+G LLV++D+AARG+D+ + N+D P A Y HRAGRTGR K ++
Sbjct: 289 REGRTKLLVASDVAARGLDIEGLGMVINYDPPIDAEHYTHRAGRTGR---MGRKGLAITL 345
Query: 241 ITSEELFVLQRYENELKFKSEELTL 265
+T + F+++++ EL EE L
Sbjct: 346 VTDRQTFIMRKFNRELGISIEERVL 370
>gi|299822345|ref|ZP_07054231.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
gi|299815874|gb|EFI83112.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
Length = 512
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 132/272 (48%), Gaps = 36/272 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI + + KLE+V+ LV+DE D + N + ++ +L S S RQT+ SA++
Sbjct: 131 GRMLDLINRRVLKLENVETLVLDEADEMLNMG-FIDDIEAILKSVPS--ERQTLLFSATM 187
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ ++V + + L + FV +K K+ L L+
Sbjct: 188 PDPIRRIAERFMHS--------PELVRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 237
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE IIF ++K+ + S L + +++ G ++ R +
Sbjct: 238 DVQAPELAIIF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 283
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + ++
Sbjct: 284 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKEG 340
Query: 236 TVTSIITSEELFVLQRYENELKFKSEELTLQT 267
+ + E+ L+ E K + E L T
Sbjct: 341 MAITFVQPREMGYLRIVEETTKKRMEPLKPPT 372
>gi|170725255|ref|YP_001759281.1| ATP-dependent RNA helicase SrmB [Shewanella woodyi ATCC 51908]
gi|169810602|gb|ACA85186.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 408
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 131/256 (51%), Gaps = 28/256 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + ++K +F E V++LVIDE D + + S++ + +A S +QT+ SA++
Sbjct: 132 GRLMEYLDKGLFNAEEVEILVIDEADRMLDMG--FSAVVETIA-IESVGRKQTMLFSATL 188
Query: 62 PQHR--RFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICG-KKMKYQTLLSLIQS 118
RF H + +D V V A + + +H I K+ K++ L S++Q
Sbjct: 189 EGSDVGRFSHQLL------TDPVKVEAEAPRSEKAKIHQWIHIADDKEHKFKLLCSILQQ 242
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ + I+FV K+++A + L + SY + +M R +L
Sbjct: 243 EETQRAIVFV-----KTREAVASLEGMLQRVGIPCSY--------MRGDMEQKQRFQALG 289
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+G +L++TD+AARGID+ + TH+ NFD+PRSA Y+HR GRTGR + K T
Sbjct: 290 RFTKGEVNVLLATDVAARGIDVEDITHVINFDMPRSADTYVHRIGRTGR---AGAKGTAI 346
Query: 239 SIITSEELFVLQRYEN 254
S++ + ++ V+ + E
Sbjct: 347 SLVEAHDIRVVGKIER 362
>gi|350272013|ref|YP_004883321.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
gi|348596855|dbj|BAL00816.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
Length = 435
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G LC LI + + ++V V+DE D + + + +KK+L + RQT+ SA++
Sbjct: 129 GRLCDLINQGYVDISQIEVFVLDEADRMLDMGF-IRDVKKVLNALP--KKRQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ L N I D V V V+ + S +H + K K + L L++
Sbjct: 186 PKEIEVLANTILH-----DPVTVKVDPVTSTASSIHQHVYLIDKGNKRRLLAKLLRGREV 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
S ++F + K T ++ + + + N+R +L +
Sbjct: 241 GSALVFTRTKHAADKVVKELAETGMVA-------------MAIHGNKSQNARQTALKRFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
G +LV+TDIAARGID+PE +H++N++LP Y+HR GRTGR
Sbjct: 288 SGDIKILVATDIAARGIDIPELSHVFNYELPNEPETYIHRIGRTGR 333
>gi|257077167|ref|ZP_05571528.1| DEAD box protein [Ferroplasma acidarmanus fer1]
Length = 430
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 130/267 (48%), Gaps = 22/267 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L + KL+ V+ LV+DE D + + + +KK+++ + RQT+ SA++
Sbjct: 123 GRILDLYNQKYLKLDHVKYLVLDEADLMLDMG-FIDDIKKIISF--TPEGRQTILLSATL 179
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + + N V + +PS + H + + K K+ TL+S I S
Sbjct: 180 PAEVKTIANHFMNNPE-----FVDAGGDEAIPSSIKHLYTVSEKFDKFSTLMSYIHSYNS 234
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
I+FV K++++G+ LL LS S G ++VL+ M ++R S+ + R
Sbjct: 235 RKAIVFV-----KTQRSGD-----LLNLILSRS--GFNNVLI-HGGMKQHARERSIADFR 281
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+LV+T++AARG+D+P T I NFD P S Y HR GR+GR T+
Sbjct: 282 HIDSGILVATNVAARGLDIPNITDIINFDAPDSTETYAHRVGRSGRMGKDGRAMTIFDPS 341
Query: 242 TSEELFVLQRYENELKFKSEELTLQTQ 268
+ +QR N +K + + L+T+
Sbjct: 342 QKSLIQSIQR-RNRIKMEKINIDLETE 367
>gi|403379387|ref|ZP_10921444.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
JC66]
Length = 416
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 120/260 (46%), Gaps = 27/260 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVD--FLFNSSKQVSSLKKLLASYSSCNNRQTVFASA 59
G + +LI+ + V+ +V+DE D + K+ ++ + S+ +RQ F SA
Sbjct: 130 GRILELIKLKKLSMHYVRTIVVDEADEVLRLGAKKEAEAIIR-----SALRDRQLAFFSA 184
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++ R +W ++ V V PS + H +V+C ++ K +T L +
Sbjct: 185 TVSSELR----SWASQWVQAVEEKVKVAGDAFTPSGIQHYYVMCDERDKIETARKLYHAL 240
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
P+S IIF+ + + L+ + +V L + + RA +
Sbjct: 241 QPDSAIIFIND-------------SELIAEVQEKLRYSRLNVEALYGDADKQERARVIQG 287
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R LL++TD+AARG+D P+ T + N +LP S YLHRAGRTGR K V S
Sbjct: 288 FRDKRFPLLLATDVAARGLDFPDVTVVLNLELPVSGDHYLHRAGRTGR---MGRKGVVVS 344
Query: 240 IITSEELFVLQRYENELKFK 259
+ ELF+++++ L +
Sbjct: 345 VAARNELFIIEKFAKRLGIR 364
>gi|251795451|ref|YP_003010182.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
gi|247543077|gb|ACT00096.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
Length = 472
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 127/251 (50%), Gaps = 30/251 (11%)
Query: 18 VQVLVIDEVDFLF--NSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQK 75
V+ +VIDE D +F S+++V ++ ++ RQ F SA+ P + + +
Sbjct: 147 VRHIVIDEADQVFELGSTREVETI-----LFAMSQERQLAFFSATYPD----VMARFEGR 197
Query: 76 WTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKS 135
W K D V + + + + +++ +V+C K+ K +++ PES ++F+
Sbjct: 198 WMK-DTVRIQIAPEQRVSETINNFYVVCDKRDKPDAARRIVRMLKPESALLFLN------ 250
Query: 136 KKAGNAPSTTLLVDFLSN-SYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA 194
T + ++ + SY+G S V L + + RAA+L R+G LL++TD+A
Sbjct: 251 -------VTENIANWEAKLSYEGFS-VETLYGDSDKQRRAATLARFREGKTQLLLATDVA 302
Query: 195 ARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYEN 254
ARG+D+ + N D P A Y+HRAGRTGR K TV S+IT +E F++ ++
Sbjct: 303 ARGLDIEGLQLVINLDPPIDADHYVHRAGRTGR---MGRKGTVISLITPQERFIMDKFRK 359
Query: 255 ELKFKSEELTL 265
L+ + E +
Sbjct: 360 SLRIELPEKAM 370
>gi|253699589|ref|YP_003020778.1| DEAD/DEAH box helicase [Geobacter sp. M21]
gi|251774439|gb|ACT17020.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
Length = 453
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 128/270 (47%), Gaps = 45/270 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + L V++LV+DE D +F+ + ++K+L + RQ + SA++
Sbjct: 129 GRLLDHISQGTIDLSKVEILVLDEADQMFDMGF-LPDVRKILRALP--GKRQNLMFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR H ++ T V V+ P + + H G+ +K L +++
Sbjct: 186 PDDIRRLAHEILRNPVT------VQVSRTAPA-ATVSHALYPVGQHLKTPLLFEMLKHTD 238
Query: 121 PESGIIF---------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFN 171
ES +IF VGEQ EK+ YK +S L+ ++ N
Sbjct: 239 TESVLIFTKTKHRAKRVGEQLEKA------------------GYKATS----LQGNLSQN 276
Query: 172 SRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS 231
R A+L R G ++V+TDIAARGID+ +H+ N+D+P + Y HR GRTGR +
Sbjct: 277 RRQAALDGFRDGTFQIMVATDIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKT 336
Query: 232 DEKWTVTSIITSEELFVLQRYENELKFKSE 261
+ +T ++TSE+ + ++ E L K E
Sbjct: 337 GDAFT---MVTSEDDYTVRAIEKVLGTKIE 363
>gi|376259497|ref|YP_005146217.1| DNA/RNA helicase [Clostridium sp. BNL1100]
gi|373943491|gb|AEY64412.1| DNA/RNA helicase, superfamily II [Clostridium sp. BNL1100]
Length = 437
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 131/272 (48%), Gaps = 52/272 (19%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +++ ++IDE D L + + ++K ++ + + RQ V SA+I
Sbjct: 132 GRILELIQKKKISAHTIKTIIIDEADRLLDDY-NLDTIKAVIKT--TLKERQIVMCSATI 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
++ + + K +V + + +P + H + + ++ K L L++ P
Sbjct: 189 --SKKTVERAMP--LMKEPLV-IESKSDMGVPEAIEHLYFVAEQREKIDVLRKLVRMINP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF----------- 170
+ I F + S D+ + EE++ +
Sbjct: 244 KKAIAF---------------------------FANSEDIFVSEEKLRYHKLKAGGIHGS 276
Query: 171 ---NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ R ++ + + G LL+++DIAARG+D+ + THI+N ++P ++DYLHRAGRTGR
Sbjct: 277 HLKSDRKQTMDDFKNGRLQLLIASDIAARGLDIEDVTHIFNVNIPERSMDYLHRAGRTGR 336
Query: 228 KPFSDEKWTVTSIITSEELFVLQRYENELKFK 259
+ + SI+T +E+ +++++E ELK K
Sbjct: 337 ---NGKPGVAISIVTEKEIELMRKFEKELKIK 365
>gi|182419538|ref|ZP_02950787.1| ATP-dependent RNA helicase [Clostridium butyricum 5521]
gi|237668934|ref|ZP_04528918.1| dead/deah box helicase domain protein [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182376573|gb|EDT74148.1| ATP-dependent RNA helicase [Clostridium butyricum 5521]
gi|237657282|gb|EEP54838.1| dead/deah box helicase domain protein [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 408
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 125/261 (47%), Gaps = 24/261 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI K +++ +VIDE D L + K+ K ++ + + +RQ + SASI
Sbjct: 132 GRILDLIRKKKITAHTIKTIVIDEGDNLLDP-KRAQITKDIIKT--TMRDRQLLVFSASI 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
L C ++ K V+ + P+ H FV C ++ K++TL +I + P
Sbjct: 189 KPET--LLTC--ERLMKEPVIIKSEEKAEMNPNIEHMLFV-CDRRDKFETLRKIIVAAKP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+FV + TT ++F S D + ++ R ++ R
Sbjct: 244 EKAIVFVNSNED-------IEMTTAKLNF------HSKDCFAMNGHISKEDRKLAIESFR 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LVS+D+ ARG+D+ THI++ DLP +YLHRAGRT R + +I
Sbjct: 291 NGKIKILVSSDVTARGLDVEGVTHIFHLDLPLKVNEYLHRAGRTAR---GNNTGISIAIA 347
Query: 242 TSEELFVLQRYENELKFKSEE 262
T ++L ++++YE E K EE
Sbjct: 348 TVKQLNIIKKYEKEFNIKFEE 368
>gi|301064428|ref|ZP_07204851.1| helicase C-terminal domain protein [delta proteobacterium NaphS2]
gi|300441469|gb|EFK05811.1| helicase C-terminal domain protein [delta proteobacterium NaphS2]
Length = 326
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 116/227 (51%), Gaps = 21/227 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
GSL ++I L V++LVIDE D + + + ++K++ S + RQT+F SA++
Sbjct: 21 GSLLDFKRQNILHLNQVEILVIDEADRMLDMGF-IPDVRKIVYSAPHKDKRQTMFFSATL 79
Query: 62 -PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
PQ R + ++WTK+ V HV + + + R I + K+ LL+LI
Sbjct: 80 TPQVER-----LAEQWTKNPV-HVEIEPEQVAAESIKQRVYIVTTEEKFALLLNLIIGQK 133
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
E ++FV + + T L + L Y+ + VL E+ N R +L
Sbjct: 134 LERVLVFVNRRDQ----------TRHLAEKLRR-YRINCAVL--SGEVPQNKRIKTLENF 180
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+TD+AARG+ + +H+ NF LP+ DY+HR GRTGR
Sbjct: 181 RSGRVRVLVATDVAARGLHVEGISHVINFTLPQDPEDYVHRIGRTGR 227
>gi|431793948|ref|YP_007220853.1| DNA/RNA helicase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784174|gb|AGA69457.1| DNA/RNA helicase, superfamily II [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 432
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 124/262 (47%), Gaps = 34/262 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K ++++ +V+DE D L + K + ++K +L + + +RQ + SA++
Sbjct: 154 GRILELIQKKKISSQTIKTIVLDEADRLLDE-KNLQTVKAVLKT--TLKDRQVLLFSATV 210
Query: 62 P-----QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P Q FL + + T+ V + H++ +C ++ K + L LI
Sbjct: 211 PPETVKQAADFLKDPAILRVTEKATV----------TPTIAHQYFLCEQRDKLELLRKLI 260
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ P +IF+ + E K L + +S GS+D + R +
Sbjct: 261 RHLEPTRALIFINKSEEIEKTVERLKYHGLEAEAIS----GSAD---------KDKRRQA 307
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ R G LLV++D+AARG+D+ THI+N DLP YLHR GRTGR + +
Sbjct: 308 MENFRNGKTNLLVASDLAARGLDIKNITHIFNLDLPEDPHLYLHRVGRTGR---AGQSGV 364
Query: 237 VTSIITSEELFVLQRYENELKF 258
S+ T E + + EN LK
Sbjct: 365 AISLATENEKHFITKIENTLKI 386
>gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum A2 str. Kyoto]
gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A2 str. Kyoto]
Length = 524
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 132/265 (49%), Gaps = 27/265 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL + LV+DE D + N + ++ ++ S S +QT+ SA++
Sbjct: 133 GRVLDHINRRTLKLGGIDFLVLDEADEMLNMG-FIEDIETIMESTSE--EKQTMLFSATM 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + L + K DV H+ + + + K K + L +I S+ P
Sbjct: 190 PEPIKKL----ALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCRIIDSEEP 245
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
ES IIF ++K+ VD L + + +V + +M+ N R +L +
Sbjct: 246 ESAIIFC-----RTKRG---------VDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKF 291
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++ LV+TD+AARGID+ +H+ N+D+P+ A Y+HR GRTGR +D++ T S+
Sbjct: 292 KKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGR---ADKEGTAYSL 348
Query: 241 ITSEELFVLQRYE--NELKFKSEEL 263
+T E+ +++ E + K K +EL
Sbjct: 349 VTPREVSSIRQIERITKSKIKKKEL 373
>gi|134299705|ref|YP_001113201.1| DEAD/DEAH box helicase [Desulfotomaculum reducens MI-1]
gi|134052405|gb|ABO50376.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
MI-1]
Length = 438
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 136/265 (51%), Gaps = 33/265 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI++ +++ +VIDE D L + + ++ +K ++ + + +RQ + SA +
Sbjct: 132 GRVLELIKRKKISSHTIKTIVIDEADMLLDQN-NLAGVKDVIKT--TMRDRQLMIFSAYM 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
Q R + ++ TK V + + I P+ + H ++I ++ K + L LI + P
Sbjct: 189 NQ--RAMAES--KELTKDAEVIIIEDEILVNPN-ITHLYLIAEQRDKMKVLRKLIAATKP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDF----LSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ IIFV K + +T L + + +S Y ++ +EE
Sbjct: 244 KKAIIFVN-------KMEDIQTTALKLQYHNFKVSEIYGKAA-----KEERQ------KA 285
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+E + G LLV++D+AARG+D+ THI+N DLP + +YLHR GRTGRK + T
Sbjct: 286 MEGFRSEGQLLVASDMAARGLDINGVTHIFNLDLPEDSKEYLHRVGRTGRK---GKLGTA 342
Query: 238 TSIITSEELFVLQRYENELKFKSEE 262
SI+T E +L++YE E K EE
Sbjct: 343 ISIVTERETALLKKYEREFKIIIEE 367
>gi|197119659|ref|YP_002140086.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
gi|197089019|gb|ACH40290.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
Length = 471
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 130/275 (47%), Gaps = 45/275 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + L V++LV+DE D +F+ + ++K+L + RQ + SA++
Sbjct: 129 GRLLDHISQGTIDLSRVEILVLDEADQMFDMGF-LPDVRKILRALP--GKRQNLMFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR H ++ T V V+ P + + H G+ +K L +++
Sbjct: 186 PDDIRRLAHEILRNPVT------VQVSRTAPA-ATVSHALYPVGQHLKTPLLFEMLKHTD 238
Query: 121 PESGIIF---------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFN 171
ES +IF VGEQ EK+ YK +S L+ ++ N
Sbjct: 239 TESVLIFTKTKHRAKRVGEQLEKA------------------GYKATS----LQGNLSQN 276
Query: 172 SRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS 231
R A+L R G ++V+TDIAARGID+ +H+ N+D+P + Y HR GRTGR +
Sbjct: 277 RRQAALDGFRDGTFQIMVATDIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKT 336
Query: 232 DEKWTVTSIITSEELFVLQRYENELKFKSEELTLQ 266
+ +T ++TSE+ + ++ E L K E ++
Sbjct: 337 GDAFT---MVTSEDDYTVRSIEKVLGTKIERRRIE 368
>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
15579]
gi|387819068|ref|YP_005679415.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
gi|187772242|gb|EDU36044.1| DEAD/DEAH box helicase [Clostridium sporogenes ATCC 15579]
gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
Length = 524
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 131/260 (50%), Gaps = 27/260 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL + LV+DE D + N + ++ ++AS + +QT+ SA++
Sbjct: 133 GRVLDHINRRTLKLGGIDFLVLDEADEMLNMG-FIEDIETIMAS--TPEEKQTMLFSATM 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHV-NAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P + L + K DV H+ + + H F + K K + + +I S+
Sbjct: 190 PAPIKKL----ALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKD-KLEAICRIIDSEE 244
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLE 179
PES IIF ++K+ VD L + + +V + +M+ N R +L +
Sbjct: 245 PESAIIFC-----RTKRG---------VDELVEAMQSKGYNVEGMHGDMSQNQRINTLKK 290
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++ LV+TD+AARGID+ +H+ N+D+P+ A Y+HR GRTGR +D++ T S
Sbjct: 291 FKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGR---ADKEGTAYS 347
Query: 240 IITSEELFVLQRYENELKFK 259
++T E+ +++ E +K K
Sbjct: 348 LVTPREVSSIRQIERIIKSK 367
>gi|237796237|ref|YP_002863789.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum Ba4 str. 657]
gi|229263626|gb|ACQ54659.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Ba4 str. 657]
Length = 524
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 132/265 (49%), Gaps = 27/265 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL + L++DE D + N + ++ ++ S S +QT+ SA++
Sbjct: 133 GRVLDHINRRTLKLGGIDFLILDEADEMLNMG-FIEDIETIMESTSE--EKQTMLFSATM 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + L + K DV H+ + + + K K + L +I S+ P
Sbjct: 190 PEPIKKL----ALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCRIIDSEEP 245
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
ES IIF ++K+ VD L + + +V + +M+ N R +L +
Sbjct: 246 ESAIIFC-----RTKRG---------VDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKF 291
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++ LV+TD+AARGID+ +H+ N+D+P+ A Y+HR GRTGR +D++ T S+
Sbjct: 292 KKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGR---ADKEGTAYSL 348
Query: 241 ITSEELFVLQRYE--NELKFKSEEL 263
+T E+ +++ E + K K +EL
Sbjct: 349 VTPREVSSIRQIERITKSKIKKKEL 373
>gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
Length = 524
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 132/265 (49%), Gaps = 27/265 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL + L++DE D + N + ++ ++ S S +QT+ SA++
Sbjct: 133 GRVLDHINRRTLKLGGIDFLILDEADEMLNMG-FIEDIETIMESTSE--EKQTMLFSATM 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + L + K DV H+ + + + K K + L +I S+ P
Sbjct: 190 PEPIKKL----ALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCRIIDSEEP 245
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
ES IIF ++K+ VD L + + +V + +M+ N R +L +
Sbjct: 246 ESAIIFC-----RTKRG---------VDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKF 291
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++ LV+TD+AARGID+ +H+ N+D+P+ A Y+HR GRTGR +D++ T S+
Sbjct: 292 KKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGR---ADKEGTAYSL 348
Query: 241 ITSEELFVLQRYE--NELKFKSEEL 263
+T E+ +++ E + K K +EL
Sbjct: 349 VTPREVSSIRQIERITKSKIKKKEL 373
>gi|148263694|ref|YP_001230400.1| DEAD/DEAH box helicase [Geobacter uraniireducens Rf4]
gi|146397194|gb|ABQ25827.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
Rf4]
Length = 447
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 133/275 (48%), Gaps = 45/275 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + + V+VLV+DE D +F+ ++++L RQT+ SA++
Sbjct: 129 GRLLDHIGQGTIDVSRVEVLVLDEADQMFDMGF-FPDIRRILKHLP--KQRQTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR H + +D V V V P P + H + +K LL L++
Sbjct: 186 PDEIRRLAHEVL------NDPVTVQVGNTAP-PVTVSHALYPVEQHLKTPLLLELLRHTD 238
Query: 121 PESGIIF---------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFN 171
ES ++F +GEQ EK+ Y+ +S L+ ++ N
Sbjct: 239 TESVLVFTRTKHRAKRLGEQLEKA------------------GYRAAS----LQGNLSQN 276
Query: 172 SRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS 231
R A+L R G +LV+TDIAARGID+ + +H+ N+D+P +A Y+HR GRTGR S
Sbjct: 277 RRQAALDGFRDGTFQILVATDIAARGIDVSQISHVVNYDIPDTAEAYVHRIGRTGRAARS 336
Query: 232 DEKWTVTSIITSEELFVLQRYENELKFKSEELTLQ 266
+ +T ++TSE+ +++ E LK E T++
Sbjct: 337 GDAFT---LVTSEDTAMVRAIERALKSSLERRTVE 368
>gi|196231991|ref|ZP_03130847.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
Ellin428]
gi|196224113|gb|EDY18627.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
Ellin428]
Length = 405
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 118/246 (47%), Gaps = 26/246 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +E L+++Q LV+DEVD + + + +++++ RQT+F SA++
Sbjct: 127 GRLLDFLEDGTANLKNIQYLVLDEVDRMLDMGF-LPQVRRIVDRVP--KERQTLFFSATL 183
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + KW D V + A + + H K K+ L++L++
Sbjct: 184 PPELETM-----TKWLLKDPEQVEIGARRSPAETVTHALYPVAKDQKFDLLIALLERTKF 238
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG-SSDVLLLEEEMNFNSRAASLLEV 180
+S IIF ST ++ D +++ K V +L R +L
Sbjct: 239 DSAIIFT--------------STKIMADKVAHRLKDLKHSVAVLHSNRTQREREDALAGF 284
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G ++V+TDIAARG+D+ +H+ N+D+P+ DY+HR GRTGR + + +T I
Sbjct: 285 KSGKYEVMVATDIAARGLDIAGVSHVINYDVPQHPEDYVHRIGRTGRALLTGDAFT---I 341
Query: 241 ITSEEL 246
T+EEL
Sbjct: 342 FTAEEL 347
>gi|148379738|ref|YP_001254279.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 3502]
gi|153933390|ref|YP_001384035.1| DEAD/DEAH box helicase [Clostridium botulinum A str. ATCC 19397]
gi|153934793|ref|YP_001387577.1| DEAD/DEAH box helicase [Clostridium botulinum A str. Hall]
gi|148289222|emb|CAL83317.1| putative ATP-dependent RNA helicase [Clostridium botulinum A str.
ATCC 3502]
gi|152929434|gb|ABS34934.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 19397]
gi|152930707|gb|ABS36206.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. Hall]
Length = 421
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 129/261 (49%), Gaps = 24/261 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +V+ +VIDE D L + + + +K+++ + + RQ + SA+I
Sbjct: 132 GRILELIKKKKITAHTVKTIVIDEGDKLLDKN-NLKVVKEVIKT--TLRERQLMLFSATI 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ + + + D V V V + + H ++ + + + L LI + P
Sbjct: 189 TESTLNIAKDLMK-----DSVIVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAATNP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I+F+ E TTL + + + K E+E R +L + R
Sbjct: 244 KRAIVFINRNEE-------IELTTLKLQY--HKIKAYGIYGAAEKE----QRKKALEDFR 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LVS+D++ARG+D+ + THI+N DLP + +YLHR GRTGR + ++ SII
Sbjct: 291 SGKVQILVSSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGR---ASKEGIAISII 347
Query: 242 TSEELFVLQRYENELKFKSEE 262
T +E ++++YE E EE
Sbjct: 348 TEKEKALIRKYEKEFNINIEE 368
>gi|404369513|ref|ZP_10974847.1| hypothetical protein CSBG_03368 [Clostridium sp. 7_2_43FAA]
gi|226914541|gb|EEH99742.1| hypothetical protein CSBG_03368 [Clostridium sp. 7_2_43FAA]
Length = 526
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 127/257 (49%), Gaps = 25/257 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I++ KL+ ++ LV+DE D + N + L+ ++ S RQT+ SA++
Sbjct: 130 GRVLDHIKRGTIKLDQIKFLVLDEADEMLNMG-FIDDLEDIIKQLPS--ERQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R L +++ K D H+ + S + F K +++ L ++ D P
Sbjct: 187 PDQIRKL----AKRYMKPDAKHISIKKTSMTVSTISQNFFEVSHKTRFEALCRVLDFDTP 242
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLL-LEEEMNFNSRAASLLEV 180
S IIF ++KK VD L + V+ + +M+ R +L +
Sbjct: 243 SSAIIFC-----RTKKG---------VDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKF 288
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G LV+TD+AARGID+ TH+ N+DLP+ Y+HR GRTGR ++ + S+
Sbjct: 289 KEGSLNYLVATDVAARGIDVEGITHVINYDLPQDVESYVHRIGRTGR---ANREGIAYSL 345
Query: 241 ITSEELFVLQRYENELK 257
++ +E +L++ ++ K
Sbjct: 346 VSPKEYSMLKQIKSVTK 362
>gi|18310378|ref|NP_562312.1| ATP-dependent RNA helicase [Clostridium perfringens str. 13]
gi|110801126|ref|YP_696091.1| DEAD/DEAH box helicase [Clostridium perfringens ATCC 13124]
gi|110803627|ref|YP_698708.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens SM101]
gi|422874320|ref|ZP_16920805.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens F262]
gi|18145058|dbj|BAB81102.1| ATP-dependent RNA helicase [Clostridium perfringens str. 13]
gi|110675773|gb|ABG84760.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens ATCC 13124]
gi|110684128|gb|ABG87498.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens SM101]
gi|380304797|gb|EIA17083.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens F262]
Length = 528
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 127/265 (47%), Gaps = 37/265 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI + L + LV+DE D + N + L++++ S + +RQT+ SA++
Sbjct: 133 GRVLDLIRRKSLPLNDIGFLVLDEADEMLNMG-FIDDLEEIVKSLKT--DRQTLLFSATM 189
Query: 62 P-QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P Q ++ N + K D H+ + S + + + +++TL ++ D
Sbjct: 190 PPQIKKLARN-----YMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLDFDE 244
Query: 121 PESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
P + IIF V E EK + G ++ G +M+ N R
Sbjct: 245 PNAAIIFCKTKKGVDEVVEKMQARG----------YMVEGMHG---------DMSQNHRL 285
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEK 234
+L + ++G LV+TD+AARGID+ TH+ N+DLP+ Y+HR GRTGR ++ +
Sbjct: 286 QTLRKFKEGSLDFLVATDVAARGIDVESVTHVINYDLPQDNESYVHRIGRTGR---ANRE 342
Query: 235 WTVTSIITSEELFVLQRYENELKFK 259
S++T +E +L++ + K K
Sbjct: 343 GVAYSLVTPKEYMMLKQIQKHTKSK 367
>gi|359409801|ref|ZP_09202266.1| DEAD/DEAH box helicase domain protein [Clostridium sp. DL-VIII]
gi|357168685|gb|EHI96859.1| DEAD/DEAH box helicase domain protein [Clostridium sp. DL-VIII]
Length = 525
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 130/256 (50%), Gaps = 23/256 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+++ L++++ LV+DE D + N + ++ +L+ S RQT+ SA++
Sbjct: 131 GRLLDLLKRKCLHLDNIEFLVLDEADEMLNMG-FIDDIEAILSHTPS--ERQTLLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L +++ K D V + S + + + K + + L L+ D P
Sbjct: 188 PDPIAKL----AKRYMKPDAKLVTIKKSSLTVSKIEQSYFMINNKHRLEALCRLLDLDNP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
S IIF ++K+ + L+ + S Y V + +M R +L + +
Sbjct: 244 SSAIIFC-----RTKRGVDE----LVQELQSKGYM----VEGMHGDMTQAHRLTTLNKFK 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G LL++TD+AARGID+ TH++N+DLP+ Y+HR GRTGR +++ T S++
Sbjct: 291 EGTLSLLIATDVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGR---ANKSGTAYSLV 347
Query: 242 TSEELFVLQRYENELK 257
T ++ +L++ +N K
Sbjct: 348 TPKDFSMLKQIQNVTK 363
>gi|182418672|ref|ZP_02949948.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
gi|237669697|ref|ZP_04529674.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182377449|gb|EDT75004.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
gi|237654771|gb|EEP52334.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 524
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 128/252 (50%), Gaps = 23/252 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI++ L+SV+ LV+DE D + N + ++ +L+ + RQT+ SA++
Sbjct: 130 GRMLDLIKRKCLHLDSVEFLVLDEADEMLNMG-FIDDIESILSH--TPEERQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L +++ K D V V S + + + K + + L L+ D P
Sbjct: 187 PDPIAKL----AKRYMKPDAKLVSVKKSSLTVSKIEQSYFMINNKHRLEALCRLLDLDNP 242
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
S IIF ++K+ + L+ + S Y V + +M R +L + +
Sbjct: 243 SSAIIFC-----RTKRGVDE----LVQELQSKGYM----VEGMHGDMTQAHRLTTLSKFK 289
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G LL++TD+AARGID+ TH++N+DLP+ Y+HR GRTGR ++ + T S++
Sbjct: 290 EGTLNLLIATDVAARGIDVDGVTHVFNYDLPQDVESYVHRIGRTGR---ANREGTAYSLV 346
Query: 242 TSEELFVLQRYE 253
T ++ +L++ +
Sbjct: 347 TPKDFSMLKQIQ 358
>gi|311031130|ref|ZP_07709220.1| DEAD/DEAH box helicase domain protein [Bacillus sp. m3-13]
Length = 507
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 134/268 (50%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L++V +V+DE D + N + ++K+LA + +QT+ SA++
Sbjct: 129 GRLLDHINRKTLRLQNVNTVVLDEADEMLNMGF-IEDIEKILAE--TPEKKQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R I +++ S+ V+V V A + S + +V +K K+ TL L+ +P
Sbjct: 186 PAPIR----AIAERFM-SEPVNVKVQAKELTISNIQQFYVEVPEKKKFDTLTRLLDIQSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS--YKGSSDVLLLEEEMNFNSRAASLLE 179
E IIF T VD LS++ +G S + +++ R + L +
Sbjct: 241 ELAIIF--------------GRTKRRVDELSDALNVRGYS-AEGIHGDLSQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + +
Sbjct: 286 FKEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKSGLAIT 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
++ E+ L E K K ++L T
Sbjct: 343 FVSPREVSYLHHVERVTKRKMDKLKAPT 370
>gi|433546481|ref|ZP_20502800.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
gi|432182198|gb|ELK39780.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
Length = 484
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 133/269 (49%), Gaps = 26/269 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + + +L++++++V+DE D + N + +K++L +NRQT+ SA++
Sbjct: 110 GRFMDHMRRRTIRLDAIEIVVLDEADEMLNMGF-IDDIKEILQEVP--DNRQTLLFSATM 166
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + QQ T+ ++ V + +P+ + +++ +K K+ L L+ +P
Sbjct: 167 P---RAIQEIAQQFMTEPALISVKPKEVT-VPN-IEQQYMEVAEKQKFDVLCRLLDIHSP 221
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRAASLLEV 180
E IIF T VD LS + K + ++N R + L +
Sbjct: 222 ELAIIFG--------------RTKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKF 267
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G +LV+TD+AARG+D+ TH++NFD+P+ + Y+HR GRTGR + + +
Sbjct: 268 KEGTIEVLVATDVAARGLDISGVTHVFNFDIPQDSESYVHRIGRTGR---AGKTGLAITF 324
Query: 241 ITSEELFVLQRYENELKFKSEELTLQTQC 269
+TS E+ L+ E + E ++ T
Sbjct: 325 VTSREIDHLRLIERATNRRMERRSVPTMA 353
>gi|422346062|ref|ZP_16426976.1| hypothetical protein HMPREF9476_01049 [Clostridium perfringens
WAL-14572]
gi|373226684|gb|EHP49006.1| hypothetical protein HMPREF9476_01049 [Clostridium perfringens
WAL-14572]
Length = 524
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 127/265 (47%), Gaps = 37/265 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI + L + LV+DE D + N + L++++ S + +RQT+ SA++
Sbjct: 133 GRVLDLIRRKSLPLNDIGFLVLDEADEMLNMG-FIDDLEEIVKSLKT--DRQTLLFSATM 189
Query: 62 P-QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P Q ++ N + K D H+ + S + + + +++TL ++ D
Sbjct: 190 PPQIKKLARN-----YMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLDFDE 244
Query: 121 PESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
P + IIF V E EK + G ++ G +M+ N R
Sbjct: 245 PNAAIIFCKTKKGVDEVVEKMQARG----------YMVEGMHG---------DMSQNHRL 285
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEK 234
+L + ++G LV+TD+AARGID+ TH+ N+DLP+ Y+HR GRTGR ++ +
Sbjct: 286 QTLRKFKEGSLDFLVATDVAARGIDVESVTHVINYDLPQDNESYVHRIGRTGR---ANRE 342
Query: 235 WTVTSIITSEELFVLQRYENELKFK 259
S++T +E +L++ + K K
Sbjct: 343 GVAYSLVTPKEYMMLKQIQKHTKSK 367
>gi|326202886|ref|ZP_08192753.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
gi|325986963|gb|EGD47792.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
Length = 439
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 129/276 (46%), Gaps = 60/276 (21%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +++ ++IDE D L + + S+K ++ + + RQ V SA+I
Sbjct: 132 GRILELIQKKKISAHTIKTIIIDEADRLLDDY-NLDSIKAVIKT--TLKERQIVMCSATI 188
Query: 62 PQHRRFLHNCIQQK----WTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQ 117
+ + ++ +KSD+ +P + H + + ++ K L L++
Sbjct: 189 SKKTVERAMPLMKEPLIIESKSDM---------GVPDAIEHLYFVAEQREKIDVLRKLVR 239
Query: 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF------- 170
P+ I F + S D+ + EE++ +
Sbjct: 240 MINPKKAIAF---------------------------FANSEDIFVSEEKLRYHKLKAGG 272
Query: 171 -------NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAG 223
+ R ++ + + G LL+++DIAARG+D+ + THI+N ++P ++DYLHR G
Sbjct: 273 IHGSHIKSDRKKTMDDFKNGKLQLLIASDIAARGLDIEDVTHIFNVNIPERSMDYLHRVG 332
Query: 224 RTGRKPFSDEKWTVTSIITSEELFVLQRYENELKFK 259
RTGR + + SI+T +E+ ++++E ELK K
Sbjct: 333 RTGR---NGKPGVAISIVTEKEIEFMKKFEKELKIK 365
>gi|407475055|ref|YP_006789455.1| DEAD/DEAH box helicase [Clostridium acidurici 9a]
gi|407051563|gb|AFS79608.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium acidurici 9a]
Length = 526
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 135/265 (50%), Gaps = 27/265 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G + LI + + L V LV+DE D + + + +++++ +C +RQT+ SA+
Sbjct: 131 GRVLDLIRRRVVDLSRVNFLVLDEADEMLDMG-FIDDIEEII---RNCPEDRQTMLFSAT 186
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + L + + K D+ H+ + S + + + ++++L ++ D
Sbjct: 187 MPPQIKRL----AKSYMKEDMKHISIVKNTITVSTVSQYYFEIKQNNRFESLCRILDYDE 242
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P S IIF K+KK + L V Y +V + +M + R +L +
Sbjct: 243 PSSAIIFC-----KTKKGVDELVEGLQV----RGY----NVEGMHGDMTQDHRMNTLRKF 289
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G LV+TD+AARGID+ TH++N++LP+ + Y+HR GRTGR ++ + T ++
Sbjct: 290 KEGNLEFLVATDVAARGIDIESITHVFNYELPQDSDSYVHRIGRTGR---ANRQGTAYTL 346
Query: 241 ITSEELFVLQRYENELK--FKSEEL 263
+T+ E L++ E + K K +EL
Sbjct: 347 VTAREYRFLKQIEKDTKGTIKRKEL 371
>gi|296184919|ref|ZP_06853330.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
gi|296050701|gb|EFG90124.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
Length = 374
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 135/262 (51%), Gaps = 25/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I+++ L V LV+DE D + N + +++++ S + +RQT+ SA++
Sbjct: 130 GRILDHIKRNTLDLSGVNFLVLDESDEMLNMG-FIDDIEEIIKSLNK--DRQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ L + K+ K++V H+ + + + K ++++L ++ D P
Sbjct: 187 PKEIAKLAS----KYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDRFESLCRILDIDEP 242
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
S IIF K+K+ VD L S + +V + +M N R +L +
Sbjct: 243 SSAIIFC-----KTKRG---------VDELVESMQARGYNVEGMHGDMGQNQRLNTLRKF 288
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G LV+TD+AARGID+ + +H+ N+DLP+ Y+HR GRTGR ++++ S+
Sbjct: 289 KEGTLDFLVATDVAARGIDVDDVSHVINYDLPQDMESYVHRIGRTGR---ANKEGIAYSL 345
Query: 241 ITSEELFVLQRYENELKFKSEE 262
+T E ++++ E K +++E
Sbjct: 346 VTPREYIMIKQLEKFTKRQNKE 367
>gi|399048154|ref|ZP_10739853.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398053887|gb|EJL46038.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 503
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 133/269 (49%), Gaps = 26/269 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + + +L++++++V+DE D + N + +K++L +NRQT+ SA++
Sbjct: 129 GRFMDHMRRRTIRLDAIEIVVLDEADEMLNMGF-IDDIKEILQEVP--DNRQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + QQ T+ ++ V + +P+ + +++ +K K+ L L+ +P
Sbjct: 186 P---RAIQEIAQQFMTEPALISVKPKEVT-VPN-IEQQYMEVAEKQKFDVLCRLLDIHSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRAASLLEV 180
E IIF T VD LS + K + ++N R + L +
Sbjct: 241 ELAIIF--------------GRTKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKF 286
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G +LV+TD+AARG+D+ TH++NFD+P+ + Y+HR GRTGR + + +
Sbjct: 287 KEGTIEVLVATDVAARGLDISGVTHVFNFDIPQDSESYVHRIGRTGR---AGKTGLAITF 343
Query: 241 ITSEELFVLQRYENELKFKSEELTLQTQC 269
+TS E+ L+ E + E ++ T
Sbjct: 344 VTSREIDHLRLIERATNRRMERRSVPTMA 372
>gi|419782961|ref|ZP_14308757.1| DEAD/DEAH box helicase [Streptococcus oralis SK610]
gi|383182695|gb|EIC75245.1| DEAD/DEAH box helicase [Streptococcus oralis SK610]
Length = 520
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|322374711|ref|ZP_08049225.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
[Streptococcus sp. C300]
gi|321280211|gb|EFX57250.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
[Streptococcus sp. C300]
Length = 449
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|168185436|ref|ZP_02620071.1| probable ATP-dependent RNA helicase YqfR [Clostridium botulinum C
str. Eklund]
gi|169296448|gb|EDS78581.1| probable ATP-dependent RNA helicase YqfR [Clostridium botulinum C
str. Eklund]
Length = 377
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 126/253 (49%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +V+ +V+DE D L + S S +K ++ + + + Q + SA+I
Sbjct: 132 GRVFELIKKKKISAHTVKTIVLDEGDRLLDKS-NASKVKDVIKT--TMRDTQLLMFSATI 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
Q + N I + + + A + + + + H + C + K L L+ + P
Sbjct: 189 SQRIMDIANVIMKNPK-----IIKIKASELMNANISHLYFQCEARDKIDILRKLLTAIKP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I+F+ + +E +T+ L N+Y S + + R ++ +
Sbjct: 244 KRAIVFINKPTEID------VTTSKLQYHKINAYSISG-------KTSKEDRKKAINGFK 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +L+++D+AARG+D+ THI+N DLP ++DYLHR GR GR D T SI+
Sbjct: 291 HGKYEILIASDVAARGLDVSNITHIFNLDLPSDSMDYLHRVGRCGR---GDNLGTAISIV 347
Query: 242 TSEELFVLQRYEN 254
T +EL +++YEN
Sbjct: 348 TDKELSFIKKYEN 360
>gi|335029349|ref|ZP_08522856.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus infantis
SK1076]
gi|334268646|gb|EGL87078.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus infantis
SK1076]
Length = 524
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 127/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P+ + I ++ K D HV + A + + ++ ++ K+ T+ L+ +
Sbjct: 184 MPEAIK----RIGVQFMK-DPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|322420867|ref|YP_004200090.1| DEAD/DEAH box helicase [Geobacter sp. M18]
gi|320127254|gb|ADW14814.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
Length = 467
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 129/275 (46%), Gaps = 45/275 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + L V+VLV+DE D +F+ + ++K+L + RQ + SA++
Sbjct: 129 GRLLDHISQGTVNLSKVEVLVLDEADQMFDMGF-LPDVRKILRALPG--KRQNLMFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR H + + T V V+ P + + H G+ +K L L++
Sbjct: 186 PDDIRRLAHEILCRPVT------VQVSRTAPA-ATVSHALYPVGQHLKTPLLFELLKHTD 238
Query: 121 PESGIIF---------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFN 171
ES +IF VGEQ EKS YK +S L+ ++ N
Sbjct: 239 TESVLIFTKTKHRAKRVGEQLEKS------------------GYKATS----LQGNLSQN 276
Query: 172 SRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS 231
R A+L R G ++V+TDIAARGID+ +H+ N+D+P + Y HR GRTGR +
Sbjct: 277 RRQAALDGFRDGTYQIMVATDIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKT 336
Query: 232 DEKWTVTSIITSEELFVLQRYENELKFKSEELTLQ 266
+ +T ++T E+ +++ E L K E L+
Sbjct: 337 GDAFT---MVTGEDEAMVRSIERVLGAKIERRRLE 368
>gi|331266806|ref|YP_004326436.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
gi|326683478|emb|CBZ01096.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
Length = 525
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|170754257|ref|YP_001782408.1| DEAD/DEAH box helicase [Clostridium botulinum B1 str. Okra]
gi|429244877|ref|ZP_19208296.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum B1 str. Okra]
gi|428758067|gb|EKX80520.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
Length = 524
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 130/260 (50%), Gaps = 27/260 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL + L++DE D + N + ++ ++ S S +QT+ SA++
Sbjct: 133 GRILDHINRRTLKLGGIDFLILDEADEMLNMG-FIEDIETIMESTSE--EKQTMLFSATM 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHV-NAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P + L + K DV H+ + + H F + K K + + +I S+
Sbjct: 190 PAPIKKL----ALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKD-KLEAICRIIDSEE 244
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLE 179
PES IIF ++K+ VD L + + +V + +M+ N R +L +
Sbjct: 245 PESAIIFC-----RTKRG---------VDELVEAMQSKGYNVEGMHGDMSQNQRINTLKK 290
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++ LV+TD+AARGID+ +H+ N+D+P+ A Y+HR GRTGR +D++ T S
Sbjct: 291 FKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGR---ADKEGTAYS 347
Query: 240 IITSEELFVLQRYENELKFK 259
++T E+ +++ E +K K
Sbjct: 348 LVTPREVSSIRQIERIIKSK 367
>gi|338812713|ref|ZP_08624877.1| ATP-dependent RNA helicase [Acetonema longum DSM 6540]
gi|337275303|gb|EGO63776.1| ATP-dependent RNA helicase [Acetonema longum DSM 6540]
Length = 469
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +E+ +LE V+ +V+DE D + N + ++ +LA+ + RQT+ SA++
Sbjct: 129 GRLMDHMERRTIRLEEVRAVVLDEADEMLNMGF-IEDIENILAATPA--GRQTILFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + L Q +D + V A + + +++ K+ L L+ P
Sbjct: 186 PKQIQNLARKFQ-----NDPALIQVKAREMTVPLIEQQYIELQDNQKFDVLCRLLDMQDP 240
Query: 122 ESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
E I+F V E +E KK G +L + G ++ R
Sbjct: 241 ELAIVFGRTKRRVDELTEALKKRG----------YLVDGIHG---------DLTQGKREI 281
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + R+G +L++TD+AARG+D+ THIYNFD+P+ Y+HR GRTGR
Sbjct: 282 VLRQFREGTIDVLIATDVAARGLDVSGVTHIYNFDIPQDPDSYVHRIGRTGR 333
>gi|324106744|gb|ADX41681.2| vasa [Cynoglossus semilaevis]
Length = 722
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +IE+ L VQ V+DE D + + + +++L+AS S RQT+ SA
Sbjct: 415 GRLMDMIERGKVGLSKVQYFVLDEADRMLDMGFE-PDMRRLVASPGMPSREGRQTLMFSA 473
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + K D + + V + S + F+ GK K + LL L+++
Sbjct: 474 TFPEEIQKL----AADFLKPDYLFLAVGIVGGACSDVEQTFIEVGKFSKREQLLDLVKTC 529
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E I+FV EK ++A + FL ++ + E+ R +L +
Sbjct: 530 GNERTIVFV----EKKRQA------DFIATFLCQENVPTTSIHGDREQWQ---REQALAD 576
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ G +LV+T +AARG+D+P+ H+ NFDLP S +Y+HR GRTGR
Sbjct: 577 FKYGKCPVLVATSVAARGLDIPDVQHVVNFDLPGSIDEYVHRIGRTGR 624
>gi|347758155|ref|YP_004865717.1| DEAD/DEAH box helicase [Micavibrio aeruginosavorus ARL-13]
gi|347590673|gb|AEP09715.1| DEAD/DEAH box helicase family protein [Micavibrio aeruginosavorus
ARL-13]
Length = 489
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 118/240 (49%), Gaps = 25/240 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L E+ L ++VLVIDE D + + + ++K+++ RQT+ SA++
Sbjct: 132 GRLLDLFERGNILLNDIKVLVIDEADRMLDMGF-IPDIEKIVSKIPPM--RQTLLFSATM 188
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P +R + T + NA + V ++ K + L +LIQ +
Sbjct: 189 PPEIKRLADKFLSNPKTIAVAAPASTNA------NVRQALVWVKERQKMELLDALIQQED 242
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSN-SYKGSSDVLLLEEEMNFNSRAASLLE 179
++ IF + K AG L FL N +Y + L +M ++R +LL+
Sbjct: 243 VKNAFIFC---NRKKDIAG-------LAKFLQNHNYAAAP----LHGDMVQSARTKTLLD 288
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G LLV +D+AARG+D+ +H++NFD+P A DY+HR GRTGR + WT+ +
Sbjct: 289 FKEGLVSLLVCSDVAARGLDVDAVSHVFNFDVPMHADDYVHRIGRTGRAGMTGRAWTMAT 348
>gi|293364998|ref|ZP_06611715.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
gi|291316448|gb|EFE56884.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
Length = 524
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|304404872|ref|ZP_07386532.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304345751|gb|EFM11585.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 503
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 125/260 (48%), Gaps = 34/260 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFN--SSKQVSSLKKLLASYSSCNNRQTVFASA 59
G + +L KL SV +VIDE D +FN S ++V + K + RQ F SA
Sbjct: 131 GRIHELAAGRKLKLSSVTKVVIDEADQVFNLGSVREVDVILK-----GTSRERQVAFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ +++KW + + V V+ + + + H F++ K+ K L++
Sbjct: 186 TRPEE----MAGMERKWMREPKL-VDVSGTQRVAESIKHHFIVVDKRDKVDVARRLVRLI 240
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSN-SYKGSSDVLLLEEEMNFNSRAASLL 178
P + ++F+ + T + + S Y+G S V +L + N R+ +L
Sbjct: 241 NPSAALLFLND-------------TENIAQWESKLRYEGFS-VEMLYGDANKQRRSVTLD 286
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR--KPFSDEKWT 236
R G LL++TD+AARG+D+ + N D P A Y+HRAGRTGR KP
Sbjct: 287 RFRSGSCKLLLATDVAARGLDIEGLPLVINLDPPIDADHYVHRAGRTGRMGKP-----GV 341
Query: 237 VTSIITSEELFVLQRYENEL 256
V SIIT +E F++ ++ L
Sbjct: 342 VISIITYQERFIMDKFSKRL 361
>gi|417935461|ref|ZP_12578778.1| DEAD/DEAH box helicase [Streptococcus infantis X]
gi|343402370|gb|EGV14875.1| DEAD/DEAH box helicase [Streptococcus infantis X]
Length = 524
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
D PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 DQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|419778066|ref|ZP_14303968.1| DEAD/DEAH box helicase [Streptococcus oralis SK10]
gi|383187819|gb|EIC80263.1| DEAD/DEAH box helicase [Streptococcus oralis SK10]
Length = 525
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 3502]
gi|153932415|ref|YP_001385046.1| DEAD/DEAH box helicase [Clostridium botulinum A str. ATCC 19397]
gi|153936759|ref|YP_001388516.1| DEAD/DEAH box helicase [Clostridium botulinum A str. Hall]
gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein)
[Clostridium botulinum A str. ATCC 3502]
gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 19397]
gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. Hall]
Length = 524
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 130/260 (50%), Gaps = 27/260 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL + L++DE D + N + ++ ++ S S +QT+ SA++
Sbjct: 133 GRILDHINRRTLKLGGIDFLILDEADEMLNMG-FIEDIETIMESTSE--EKQTMLFSATM 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHV-NAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P + L + K DV H+ + + H F + K K + + +I S+
Sbjct: 190 PAPIKKL----ALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKD-KLEAICRIIDSEE 244
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLE 179
PES IIF ++K+ VD L + + +V + +M+ N R +L +
Sbjct: 245 PESAIIFC-----RTKRG---------VDELVEAMQSKGYNVEGMHGDMSQNQRINTLKK 290
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++ LV+TD+AARGID+ +H+ N+D+P+ A Y+HR GRTGR +D++ T S
Sbjct: 291 FKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGR---ADKEGTAYS 347
Query: 240 IITSEELFVLQRYENELKFK 259
++T E+ +++ E +K K
Sbjct: 348 LVTPREVSSIRQIERIIKSK 367
>gi|401684066|ref|ZP_10815949.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
gi|400186371|gb|EJO20583.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
Length = 520
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|398816782|ref|ZP_10575424.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
gi|398031995|gb|EJL25360.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
Length = 520
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 127/257 (49%), Gaps = 29/257 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + + +L++++V+++DE D + N + +K++L +NRQT+ SA++
Sbjct: 129 GRFMDHMRRKTIRLDAIEVVILDEADEMLNMGF-IDDIKEILKEVP--DNRQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + QQ + ++ V + +P+ ++ +K K+ L L+ +P
Sbjct: 186 P---RAIQEIAQQFMNEPTIIQVKAKEVT-VPNIAQE-YMEVAEKQKFDVLCRLLDIHSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRAASLLEV 180
E IIF T VD LS + K + ++N R + L +
Sbjct: 241 ELAIIFG--------------RTKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKF 286
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G +LV+TD+AARG+D+ TH++NFD+P+ A Y+HR GRTGR + + +
Sbjct: 287 KEGTIEVLVATDVAARGLDISGVTHVFNFDIPQDAESYVHRIGRTGR---AGKTGLAITF 343
Query: 241 ITSEE---LFVLQRYEN 254
+TS E L +++R N
Sbjct: 344 VTSREIDHLRLIERTTN 360
>gi|309798558|ref|ZP_07692833.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
infantis SK1302]
gi|308117794|gb|EFO55195.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
infantis SK1302]
Length = 525
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
D PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 DQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|374994376|ref|YP_004969875.1| DNA/RNA helicase [Desulfosporosinus orientis DSM 765]
gi|357212742|gb|AET67360.1| DNA/RNA helicase, superfamily II [Desulfosporosinus orientis DSM
765]
Length = 386
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 132/263 (50%), Gaps = 34/263 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K ++V+ +V+DE D L + K S +K ++ + S A+ S
Sbjct: 131 GRILELIQKKKIVAQTVKTIVLDEADNLLDE-KNASLVKSVIKTALSRTQLLLYSATLSA 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
++R + +V+ V + I LP + H + I ++ K + L LI+ P
Sbjct: 190 AAYQRA-----SELLKNPEVIRV-TDKI-ALPPTVEHMYFIAEQRDKIEVLRKLIRIIIP 242
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS-----RAAS 176
G+IF+ KS++ N +V+ L+ Y G L+ E + S R +
Sbjct: 243 TRGLIFIN----KSEEIQN------VVEKLN--YHG------LQAEGLYGSAHKMERKKA 284
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + R G LLV++D+AARG+D+ TH++N DLP + YLHRAGRTGR + K
Sbjct: 285 LEDFRSGKRSLLVASDLAARGLDIENITHVFNLDLPENPKLYLHRAGRTGR---AGNKGI 341
Query: 237 VTSIITSEELFVLQRYENELKFK 259
SI+T +E+ L+R EN + +
Sbjct: 342 AVSIVTDKEVPFLRRLENSFEIR 364
>gi|229918086|ref|YP_002886732.1| DEAD/DEAH box helicase [Exiguobacterium sp. AT1b]
gi|229469515|gb|ACQ71287.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
Length = 509
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 121/245 (49%), Gaps = 24/245 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ KL+ +Q +++DE D + N V ++ +LA RQT+ SA++
Sbjct: 129 GRLMDHMKRKTIKLDDIQTVILDEADEMLNMGF-VEDIETILAGLP--EERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I +++ KS + + V A + ++ +F+ + K+ TL LI D+P
Sbjct: 186 PPQIK----KIAERFMKSPTI-IKVKAKEMTVENINQQFLELREGQKFDTLCRLIDIDSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E IIF ++KK + + L+ Y L ++ + R + +
Sbjct: 241 ELSIIFA-----RTKKRVDEVTEALI----KRGYTADG----LHGDLTQSKRDQVIRRFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + T + I
Sbjct: 288 NGTIDILVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGTALTFI 344
Query: 242 TSEEL 246
T E
Sbjct: 345 TPREF 349
>gi|189425674|ref|YP_001952851.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
gi|189421933|gb|ACD96331.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
Length = 439
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 134/274 (48%), Gaps = 43/274 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + L ++++LV+DE D +F+ + ++++L + RQT+ SA++
Sbjct: 129 GRLLDHINQGTIDLTNLELLVLDEADQMFDMGF-LPDIRRILKHLPA--QRQTMLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R L I + D V V+ + P + H + + + +K L+ L++
Sbjct: 186 PAEIRGLAREILR-----DPATVQVDNVAPAATVSHALYPVA-QHLKTPLLMQLLKHTDT 239
Query: 122 ESGIIF---------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172
+S +IF VGEQ EK+ Y +S L+ ++ N
Sbjct: 240 DSVLIFTRTKHRAKRVGEQLEKA------------------GYTAAS----LQGNLSQNR 277
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSD 232
R A++ R G +LV+TDIAARGID+ + +H+ N+D+P ++ Y+HR GRTGR +
Sbjct: 278 RQAAMDGFRNGTYQILVATDIAARGIDVSQVSHVINYDIPDTSEAYIHRIGRTGRAARNG 337
Query: 233 EKWTVTSIITSEELFVLQRYENELKFKSEELTLQ 266
+ +T ++T E+ +++ E L E T++
Sbjct: 338 DAFT---MVTDEDTLMVKAIERTLGAAIERRTVE 368
>gi|418975118|ref|ZP_13523027.1| DEAD/DEAH box helicase [Streptococcus oralis SK1074]
gi|383348489|gb|EID26448.1| DEAD/DEAH box helicase [Streptococcus oralis SK1074]
Length = 515
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|270293148|ref|ZP_06199359.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M143]
gi|270279127|gb|EFA24973.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M143]
Length = 520
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|421834383|ref|ZP_16269441.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum CFSAN001627]
gi|409744221|gb|EKN42870.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum CFSAN001627]
Length = 421
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 129/261 (49%), Gaps = 24/261 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +V+ +VIDE D L + + + +K+++ + + RQ + SA+I
Sbjct: 132 GRILELIKKKKITAHTVKTIVIDEGDKLLDKN-NLKVVKEVIKT--TLRERQLMLFSATI 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ N + S+VV V + + H ++ + + + L LI + P
Sbjct: 189 TES---TLNIAKDLMKDSEVVKVKEK--NTVNENIKHLYITGEHRERIEILRKLIAATNP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I+F+ E TTL + + + K E+E R +L + R
Sbjct: 244 KRAIVFINRNEE-------IELTTLKLQY--HKIKAYGIYGAAEKE----QRKKALEDFR 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LVS+D++ARG+D+ + THI+N DLP + +YLHR GRTGR + ++ SII
Sbjct: 291 SGKVQILVSSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGR---ASKEGIAISII 347
Query: 242 TSEELFVLQRYENELKFKSEE 262
T +E ++++YE E EE
Sbjct: 348 TEKEKALIRKYEKEFNINIEE 368
>gi|404497424|ref|YP_006721530.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
gi|418066827|ref|ZP_12704184.1| DEAD/DEAH box helicase domain protein [Geobacter metallireducens
RCH3]
gi|78195025|gb|ABB32792.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
gi|373559816|gb|EHP86098.1| DEAD/DEAH box helicase domain protein [Geobacter metallireducens
RCH3]
Length = 451
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 134/273 (49%), Gaps = 43/273 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + L ++VLV+DE D +F+ + L+++L RQT+ SA++
Sbjct: 129 GRLLDHMAQGTIDLSHLEVLVLDEADQMFDMGF-LPDLRRILKQLPP--KRQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R L I + D V V V + P + H + + + +K LL L++
Sbjct: 186 PIDIRVLAQEILR-----DPVTVQVGTVAPAVTVTHALYPVE-QHLKTPLLLELLRHTDT 239
Query: 122 ESGIIF---------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172
ES +IF +GEQ EK+ YK +S L+ ++ N
Sbjct: 240 ESVLIFTRTKHRAKRLGEQMEKA------------------GYKAAS----LQGNLSQNR 277
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSD 232
R A+L R G +LV+TDIAARGID+ + +H+ N+D+P +A Y+HR GRTGR S
Sbjct: 278 RQAALDGFRDGTFQILVATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSG 337
Query: 233 EKWTVTSIITSEELFVLQRYENELKFKSEELTL 265
+ +T ++TSE+ +++ E +L E T+
Sbjct: 338 DAFT---MVTSEDTAMVRTIERKLNTSLERRTM 367
>gi|212558432|gb|ACJ30886.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 410
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 132/256 (51%), Gaps = 28/256 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + ++K +F E V+VLVIDE D + + S++ + +A S +QT+ SA++
Sbjct: 135 GRLMEYLDKGLFNAEEVEVLVIDEADRMLDMG--FSAVVETIA-IESVGRKQTMLFSATL 191
Query: 62 PQHR--RFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICG-KKMKYQTLLSLIQS 118
RF H + S+ V + A + + +H I ++ K+ L +++Q
Sbjct: 192 EGSDVGRFSHQLL------SNPVKLEAEAPRSEKAKIHQWVHIADDREHKFALLYAILQQ 245
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ E I+FV K+++A + L ++ S+ + +M +R +L
Sbjct: 246 EEVERAIVFV-----KTREAVASLDGLLQKQGITCSF--------MRGDMEQKARFQALG 292
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+G +L++TD+AARGID+ + TH+ NFD+PRSA Y+HR GRTGR + K T
Sbjct: 293 RFTKGEVNVLLATDVAARGIDVDDITHVINFDMPRSADTYVHRIGRTGR---AGAKGTAI 349
Query: 239 SIITSEELFVLQRYEN 254
S++ + ++ V+ + E
Sbjct: 350 SLVEAHDIRVVGKIER 365
>gi|421488009|ref|ZP_15935407.1| DEAD/DEAH box helicase [Streptococcus oralis SK304]
gi|400369971|gb|EJP22968.1| DEAD/DEAH box helicase [Streptococcus oralis SK304]
Length = 525
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|329925824|ref|ZP_08280569.1| putative DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus
sp. HGF5]
gi|328939612|gb|EGG35959.1| putative DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus
sp. HGF5]
Length = 448
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 126/265 (47%), Gaps = 26/265 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LIE K+ V +V+DEVD +FN + ++L S+ +RQ VF SA++
Sbjct: 131 GRVRELIEIRKLKMHQVTTIVVDEVDQVFNLGG-AGDVDRIL--RSALRDRQLVFLSATV 187
Query: 62 -PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P+ + + Q V + ++ + PS L H + + ++ K L +++
Sbjct: 188 SPETAELVKKEMDQP------VEIGIDPERRTPSALEHYYFVSEERDKLDMLRRVVRHYN 241
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+ I+FV NA V+ N Y G + L + +R+ L
Sbjct: 242 PDRAIVFV-----------NATEDLAEVEAKLN-YLGLNAAALYGDADKM-TRSRVLNAF 288
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R+G LLV++D+AARG+D+ + N+D P A Y HRAGRTGR S ++
Sbjct: 289 REGRTKLLVASDVAARGLDIEGLGMVINYDPPIDAEHYTHRAGRTGRMGRS---GMAITL 345
Query: 241 ITSEELFVLQRYENELKFKSEELTL 265
+T + F+++++ EL EE L
Sbjct: 346 VTDRQTFIMRKFNRELGISIEERAL 370
>gi|118443146|ref|YP_877555.1| ATP-dependent RNA helicase [Clostridium novyi NT]
gi|118133602|gb|ABK60646.1| ATP-dependent RNA helicase [Clostridium novyi NT]
Length = 377
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 128/258 (49%), Gaps = 24/258 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +V+ +V+DE D L + S +K ++ + + + Q + SA+I
Sbjct: 132 GRVFELIKKKKISAHTVKTIVLDEGDRLLDKS-NAPKVKDVIKT--TMRDTQILMFSATI 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
Q + N I V+ V + + + + H + C + K + L L+ S P
Sbjct: 189 SQRTLDIANVI---LKNPKVIKVKSSEL--MNPNISHMYFQCEARDKIEILRKLLASIKP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I+F+ + +E +T+ L N+Y S + + R ++ +
Sbjct: 244 KRAIVFINKPTEID------VTTSKLQYHKINTYSISG-------KTSKEDRKKAIDGFK 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +L+++D+AARG+D+ THI+N DLP ++DYLHR GR GR + T SI+
Sbjct: 291 KGKYEILIASDVAARGLDVSNITHIFNLDLPSDSMDYLHRVGRCGR---GNNLGTAISIV 347
Query: 242 TSEELFVLQRYENELKFK 259
T +EL +++YEN+ K
Sbjct: 348 TEKELSFIKKYENKFNIK 365
>gi|440640444|gb|ELR10363.1| hypothetical protein GMDG_08739, partial [Geomyces destructans
20631-21]
Length = 294
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 120/248 (48%), Gaps = 31/248 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCN----NRQTVFA 57
G L ++ L V++LVIDE D + + + ++K+ CN RQT+F
Sbjct: 73 GRLLDHFQRGRIMLMGVEILVIDEADRMLDMGF-IPDIEKI------CNLLPPRRQTLFF 125
Query: 58 SASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK-MKYQTLLSLI 116
SA++P + + Q + V V A RF G+ +K + L +I
Sbjct: 126 SATMPAE---ITRLVNQFLRDPERVEVARPATTAKTITQRFRFAPDGEDWVKREVLRDMI 182
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+S+ ++ IIF + + + LL L + + + L +M+ SR +
Sbjct: 183 RSENVKNAIIFCNRKRDVA---------ILLKSLLKHGFNAGA----LHGDMDQKSRTET 229
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + R G +L ++D+AARG+D+PE +H++NFDLP A DY+HR GRTGR + +
Sbjct: 230 LDKFRNGDITILAASDVAARGLDIPEVSHVFNFDLPWQADDYVHRIGRTGR---AGREGA 286
Query: 237 VTSIITSE 244
SI+T +
Sbjct: 287 AHSIVTPD 294
>gi|429768994|ref|ZP_19301122.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
gi|429188345|gb|EKY29233.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
Length = 496
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 115/238 (48%), Gaps = 42/238 (17%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L L ++ L V+++V+DE D + + + + KL + RQT+F SA
Sbjct: 132 GRLLDLFDRGKMLLTGVELMVVDEADRMLDMGFIPDIERIFKL-----TPPRRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNC----IQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQ 110
++P ++FL + + + T +D + H+ R K K
Sbjct: 187 TMPPEITRLTQQFLKDPTRIEVARPATTADTITQHIT-----------RLPTSDPKAKRT 235
Query: 111 TLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMN 169
L +L++ ++GI+F +SE VD ++ S + D + +++
Sbjct: 236 ALRALVERGEVQNGIVFCNRKSE--------------VDIVAKSLQVHGFDAAPIHGDLD 281
Query: 170 FNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ R +L + R G LLV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 282 QSLRMKTLADFRSGALKLLVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGR 339
>gi|153939716|ref|YP_001391033.1| DEAD/DEAH box helicase [Clostridium botulinum F str. Langeland]
gi|384462072|ref|YP_005674667.1| ATP-dependent RNA helicase [Clostridium botulinum F str. 230613]
gi|152935612|gb|ABS41110.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. Langeland]
gi|295319089|gb|ADF99466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. 230613]
Length = 421
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 129/261 (49%), Gaps = 24/261 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +V+ +VIDE D L + + + +K+++ + + RQ + SA+I
Sbjct: 132 GRILELIKKKKITAHTVKTIVIDEGDKLLDKN-NLKVVKEVIKT--TLRERQLMLFSATI 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ N + S+VV V + + H ++ + + + L LI + P
Sbjct: 189 TES---TLNIAKDLMKDSEVVKVKEK--NTVNENIKHLYITGEHRERIEILRKLIAATNP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I+F+ E TTL + + + K E+E R +L + R
Sbjct: 244 KRAIVFINRNEE-------IELTTLKLQY--HKIKAYGIYGAAEKE----QRKKALEDFR 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LVS+D++ARG+D+ + THI+N DLP + +YLHR GRTGR + ++ SII
Sbjct: 291 SGKVQILVSSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGR---ASKEGIAISII 347
Query: 242 TSEELFVLQRYENELKFKSEE 262
T +E ++++YE E EE
Sbjct: 348 TEKEKALIRKYEKEFNINIEE 368
>gi|417793177|ref|ZP_12440462.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus oralis
SK255]
gi|334274175|gb|EGL92503.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus oralis
SK255]
Length = 520
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|261409198|ref|YP_003245439.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261285661|gb|ACX67632.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
Length = 448
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 126/265 (47%), Gaps = 26/265 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LIE K+ V +V+DEVD +FN + ++L S+ +RQ VF SA++
Sbjct: 131 GRVRELIEIRKLKMHQVTTIVVDEVDQVFNLGG-AGDVDRIL--RSALRDRQLVFLSATV 187
Query: 62 -PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P+ + + Q V + ++ + PS L H + + ++ K L +++
Sbjct: 188 SPETAELVKKEMDQP------VEIGIDPERRTPSALEHYYFVSEERDKLDMLRRVVRHYN 241
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+ I+FV NA V+ N Y G + L + +R+ L
Sbjct: 242 PDRAIVFV-----------NATEDLAEVEAKLN-YLGLNAAALYGDADKM-TRSRVLNAF 288
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R+G LLV++D+AARG+D+ + N+D P A Y HRAGRTGR S ++
Sbjct: 289 REGRTKLLVASDVAARGLDIEGLGMVINYDPPIDAEHYTHRAGRTGRMGRS---GMAITL 345
Query: 241 ITSEELFVLQRYENELKFKSEELTL 265
+T + F+++++ EL EE L
Sbjct: 346 VTDRQTFIMRKFNRELGISIEERAL 370
>gi|345304632|ref|YP_004826534.1| DEAD/DEAH box helicase domain-containing protein [Rhodothermus
marinus SG0.5JP17-172]
gi|345113865|gb|AEN74697.1| DEAD/DEAH box helicase domain protein [Rhodothermus marinus
SG0.5JP17-172]
Length = 505
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 120/246 (48%), Gaps = 27/246 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + LIE+ +L ++QVLV DE D + + + LK+ L R T SA
Sbjct: 169 GRILDLIERGALRLGALQVLVFDEADEMLSMGFYPAMRQLKRYL-----PRARNTAMFSA 223
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+IP + +++ K D +V ++ + + HR+ I K + L+ LI+ +
Sbjct: 224 TIPPR----VQALAREFLK-DPAYVSLSTDRIAAETIEHRYFIVPPMEKDRALVQLIELE 278
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PES IIF + + L FL N Y ++D + ++ R +
Sbjct: 279 NPESAIIFANTKRD----------VEYLGQFLKN-YGYNADAIT--GDLPQKQRERIMDR 325
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+R+G LLV+TD+AARGID+ + +H++ +D+P+ Y+HR+GRTGR E T+
Sbjct: 326 LRKGQLRLLVATDVAARGIDISDLSHVFMYDVPQDPEYYVHRSGRTGR--VGKEGTTIVL 383
Query: 240 IITSEE 245
+ EE
Sbjct: 384 VTPLEE 389
>gi|168180351|ref|ZP_02615015.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|168185059|ref|ZP_02619723.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
gi|226949022|ref|YP_002804113.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum A2 str. Kyoto]
gi|237795189|ref|YP_002862741.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum Ba4 str. 657]
gi|182668710|gb|EDT80688.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|182671890|gb|EDT83851.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
gi|226842744|gb|ACO85410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A2 str. Kyoto]
gi|229262468|gb|ACQ53501.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Ba4 str. 657]
Length = 421
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 129/261 (49%), Gaps = 24/261 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +V+ +VIDE D L + + + +K+++ + + RQ + SA+I
Sbjct: 132 GRILELIKKKKITAHTVKTIVIDEGDKLLDKN-NLKVVKEVIKT--TLRERQLMLFSATI 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ N + S+VV V + + H ++ + + + L LI + P
Sbjct: 189 TES---TLNIAKDLMKDSEVVKVKEK--NTVNENIKHLYITGEHRERIEILRKLIAATNP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I+F+ E TTL + + + K E+E R +L + R
Sbjct: 244 KRAIVFINRNEE-------IELTTLKLQY--HKIKAYGIYGAAEKE----QRKKALEDFR 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LVS+D++ARG+D+ + THI+N DLP + +YLHR GRTGR + ++ SII
Sbjct: 291 SGKVQILVSSDLSARGLDVKDITHIFNLDLPENPKEYLHRVGRTGR---ASKEGIAISII 347
Query: 242 TSEELFVLQRYENELKFKSEE 262
T +E ++++YE E EE
Sbjct: 348 TEKEKALIRKYEKEFNINIEE 368
>gi|170757010|ref|YP_001781328.1| DEAD/DEAH box helicase [Clostridium botulinum B1 str. Okra]
gi|169122222|gb|ACA46058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum B1 str. Okra]
Length = 421
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 129/261 (49%), Gaps = 24/261 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +V+ +VIDE D L + + + +K+++ + + RQ + SA+I
Sbjct: 132 GRILELIKKKKITAHTVKTIVIDEGDKLLDKN-NLKVVKEVIKT--TLRERQLMLFSATI 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ N + S+VV V + + H ++ + + + L LI + P
Sbjct: 189 TES---TLNIAKDLMKDSEVVKVKEK--NTVNENIKHLYITGEHRERIEILRKLIAATNP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I+F+ E TTL + + + K E+E R +L + R
Sbjct: 244 KRAIVFINRNEE-------IELTTLKLQY--HKIKAYGIYGAAEKE----QRKKALEDFR 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LVS+D++ARG+D+ + THI+N DLP + +YLHR GRTGR + ++ SII
Sbjct: 291 SGKVQILVSSDLSARGLDVKDITHIFNLDLPENPKEYLHRVGRTGR---ASKEGIAISII 347
Query: 242 TSEELFVLQRYENELKFKSEE 262
T +E ++++YE E EE
Sbjct: 348 TEKEKALIRKYEKEFNINIEE 368
>gi|170760702|ref|YP_001787100.1| DEAD/DEAH box helicase [Clostridium botulinum A3 str. Loch Maree]
gi|169407691|gb|ACA56102.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A3 str. Loch Maree]
Length = 421
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 129/261 (49%), Gaps = 24/261 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +V+ +VIDE D L + + + +K+++ + + RQ + SA+I
Sbjct: 132 GRILELIKKKKITAHTVKTIVIDEGDKLLDKN-NLKVVKEVIKT--TLRERQLMLFSATI 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ N + S+VV V + + H ++ + + + L LI + P
Sbjct: 189 TES---TLNIAKDLMKDSEVVKVKEK--NTVNENIKHLYITGEHRERIEILRKLIAATNP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I+F+ E TTL + + + K E+E R +L + R
Sbjct: 244 KRAIVFINRNEE-------IELTTLKLQY--HKIKAYGIYGAAEKE----QRKKALEDFR 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LVS+D++ARG+D+ + THI+N DLP + +YLHR GRTGR + ++ SII
Sbjct: 291 SGKVQILVSSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGR---ASKEGIAISII 347
Query: 242 TSEELFVLQRYENELKFKSEE 262
T +E ++++YE E EE
Sbjct: 348 TEKEKALIRKYEKEFNINIEE 368
>gi|407780047|ref|ZP_11127295.1| DEAD/DEAH box helicase [Nitratireductor pacificus pht-3B]
gi|407298177|gb|EKF17321.1| DEAD/DEAH box helicase [Nitratireductor pacificus pht-3B]
Length = 477
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 116/244 (47%), Gaps = 29/244 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 131 GRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTLLSLIQ 117
++P L Q V V V+ + + RFV G K K + L LI
Sbjct: 186 TMPPEITKLTEQFLQG-----PVRVEVSRPATTATNITQRFVKVGSKPWDKREKLRKLID 240
Query: 118 SDAP--ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ ++ IIF +SE + TL + Y D L +M+ +R
Sbjct: 241 DEGETLKNAIIFCNRKSEVA---------TLFRSLARHEY----DAGALHGDMDQRARMT 287
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L R+G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR S + +
Sbjct: 288 MLENFRKGNLKLLVASDVAARGLDIPDVSHVFNFDVPIHADDYVHRIGRTGRAGRSGKAF 347
Query: 236 TVTS 239
T+ S
Sbjct: 348 TLVS 351
>gi|86750102|ref|YP_486598.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
gi|86573130|gb|ABD07687.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
Length = 516
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 119/237 (50%), Gaps = 40/237 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++L+IDE D + + + + KL+ RQT+F +A
Sbjct: 131 GRLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERVCKLVPF-----TRQTLFFTA 185
Query: 60 SIPQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P R FLHN + + +K V V + V CG++ K +TL
Sbjct: 186 TMPPEIRRVTETFLHNPEKIEVSKPASTAVTVAQSQ----------VACGREPHEKRETL 235
Query: 113 LSLIQSDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNF 170
SLI++ ++ IIF + E V L+ S K V L +M+
Sbjct: 236 RSLIRAATDLQNAIIFCNRKRE--------------VALLAKSLQKHGFSVGALHGDMDQ 281
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++R A+L + R+G +LV++D+AARG+D+PE +H++NFD+P DY+HR GRTGR
Sbjct: 282 SARTAALDQFRKGELPILVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGR 338
>gi|315612763|ref|ZP_07887674.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 49296]
gi|315314873|gb|EFU62914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 49296]
Length = 525
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTHLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|306840076|ref|ZP_07472862.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
gi|306404804|gb|EFM61097.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
Length = 482
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 125/260 (48%), Gaps = 39/260 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P +FLH+ ++ + K+ V R V GKK K L
Sbjct: 187 TMPPEITKLTEQFLHSPVRIEVAKASSTAKTVT----------QRLVKSGKKDWDKRAVL 236
Query: 113 LSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LIQS D+ ++ IIF + + S + + + D L +M+
Sbjct: 237 RDLIQSEGDSLKNAIIFCNRKKDVS-------------ELFRSLTRHEFDAGALHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R A L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR
Sbjct: 284 RARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTSIITSEELFVLQ 250
S + +T+ ++ ++ L ++
Sbjct: 344 SGKAFTIVTLSDTKYLAAIE 363
>gi|255527323|ref|ZP_05394201.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
gi|255508970|gb|EET85332.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
Length = 527
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 130/253 (51%), Gaps = 25/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I+++ L V LV+DE D + N + +++++ S + +RQT+ SA++
Sbjct: 130 GRILDHIKRNTLDLSGVNFLVLDESDEMLNMG-FIDDIEEIIKSLNK--DRQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ L + K+ K++V H+ + + + K ++++L ++ D P
Sbjct: 187 PKEIAKLAS----KYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDRFESLCRILDIDEP 242
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
S IIF K+K+ VD L S + +V + +M N R +L +
Sbjct: 243 SSAIIFC-----KTKRG---------VDELVESMQARGYNVEGMHGDMGQNQRLNTLRKF 288
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G LV+TD+AARGID+ + +H+ N+DLP+ Y+HR GRTGR ++++ S+
Sbjct: 289 KEGTLDFLVATDVAARGIDVDDVSHVINYDLPQDMESYVHRIGRTGR---ANKEGIAYSL 345
Query: 241 ITSEELFVLQRYE 253
+T E ++++ E
Sbjct: 346 VTPREYIMIKQLE 358
>gi|402850227|ref|ZP_10898436.1| ATP-dependent RNA helicase [Rhodovulum sp. PH10]
gi|402499526|gb|EJW11229.1| ATP-dependent RNA helicase [Rhodovulum sp. PH10]
Length = 489
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 41/254 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL+ RQT+F +A
Sbjct: 131 GRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPF-----TRQTLFFTA 185
Query: 60 SIPQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P R FLHN ++ + + V+AI V CG++ K + L
Sbjct: 186 TMPAEIRRITEQFLHNPVKVEVARPATT---VDAIT-------QSLVKCGREAHDKREVL 235
Query: 113 LSLIQS-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFN 171
LI+S + ++ I+F + + + TL L + + + L +M+ +
Sbjct: 236 RKLIRSAEGLKNAIVFCNRKRDVA---------TLYRSLLRHKFS----AVALHGDMDQS 282
Query: 172 SRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS 231
SR A+L + R+G +LV++D+AARG+D+P+ +H++NFD+P DY+HR GRTGR +
Sbjct: 283 SRMAALDQFRKGEVAILVASDVAARGLDIPDVSHVFNFDVPHHPDDYVHRIGRTGR---A 339
Query: 232 DEKWTVTSIITSEE 245
T SI++ +
Sbjct: 340 GRTGTAISIVSPSD 353
>gi|387817973|ref|YP_005678318.1| ATP-dependent RNA helicase YfmL [Clostridium botulinum H04402 065]
gi|322806015|emb|CBZ03582.1| ATP-dependent RNA helicase YfmL [Clostridium botulinum H04402 065]
Length = 421
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 129/261 (49%), Gaps = 24/261 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +V+ +VIDE D L + + + +K+++ + + RQ + SA+I
Sbjct: 132 GRILELIKKKKITAHTVKTIVIDEGDKLLDKN-NLKVVKEVIKT--TLRERQLMLFSATI 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ N + S+VV V + + H ++ + + + L LI + P
Sbjct: 189 TES---TLNIAKDLMKDSEVVKVKEK--NTVNENIKHLYITGEHRERIEILRKLIAATNP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I+F+ E TTL + + + K E+E R +L + R
Sbjct: 244 KRAIVFINRNEE-------IELTTLKLQY--HKIKAYGIYGAAEKE----QRKKALEDFR 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LVS+D++ARG+D+ + THI+N DLP + +YLHR GRTGR + ++ SII
Sbjct: 291 LGKVQILVSSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGR---ASKEGIAISII 347
Query: 242 TSEELFVLQRYENELKFKSEE 262
T +E ++++YE E EE
Sbjct: 348 TEKEKALIRKYEKEFNINIEE 368
>gi|153938870|ref|YP_001392080.1| DEAD/DEAH box helicase [Clostridium botulinum F str. Langeland]
gi|384463072|ref|YP_005675667.1| ATP-dependent RNA helicase [Clostridium botulinum F str. 230613]
gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. Langeland]
gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. 230613]
Length = 524
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 127/254 (50%), Gaps = 27/254 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL + L++DE D + N + ++ ++ S S +QT+ SA++
Sbjct: 133 GRVLDHINRRTLKLGGIDFLILDEADEMLNMG-FIEDIETIMESTSE--EKQTMLFSATM 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVH-VNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P + L + K DV H+ V + H F + K K + + +I S+
Sbjct: 190 PAPIKKL----ALNYMKKDVEHIAIVKKSLTVDKIAQHYFAVKNKD-KLEAICRIIDSEE 244
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLE 179
PES IIF ++K+ VD L + + +V + +M+ N R +L +
Sbjct: 245 PESAIIFC-----RTKRG---------VDELVEAMQSKGYNVEGMHGDMSQNQRINTLKK 290
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++ LV+TD+AARGID+ +H+ N+D+P+ A Y+HR GRTGR +D++ T S
Sbjct: 291 FKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGR---ADKEGTAYS 347
Query: 240 IITSEELFVLQRYE 253
++T E+ +++ E
Sbjct: 348 LVTPREVSSIRQIE 361
>gi|62289879|ref|YP_221672.1| DEAD/DEAH box helicase [Brucella abortus bv. 1 str. 9-941]
gi|82699806|ref|YP_414380.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
gi|189024121|ref|YP_001934889.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
S19]
gi|237815373|ref|ZP_04594371.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
gi|260545377|ref|ZP_05821118.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
gi|260757905|ref|ZP_05870253.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260761727|ref|ZP_05874070.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|376273333|ref|YP_005151911.1| DEAD/DEAH box helicase [Brucella abortus A13334]
gi|423166951|ref|ZP_17153654.1| hypothetical protein M17_00641 [Brucella abortus bv. 1 str. NI435a]
gi|423170675|ref|ZP_17157350.1| hypothetical protein M19_01208 [Brucella abortus bv. 1 str. NI474]
gi|423173245|ref|ZP_17159916.1| hypothetical protein M1A_00643 [Brucella abortus bv. 1 str. NI486]
gi|423177470|ref|ZP_17164116.1| hypothetical protein M1E_01712 [Brucella abortus bv. 1 str. NI488]
gi|423180106|ref|ZP_17166747.1| hypothetical protein M1G_01206 [Brucella abortus bv. 1 str. NI010]
gi|423183238|ref|ZP_17169875.1| hypothetical protein M1I_01207 [Brucella abortus bv. 1 str. NI016]
gi|423185822|ref|ZP_17172436.1| hypothetical protein M1K_00640 [Brucella abortus bv. 1 str. NI021]
gi|423188960|ref|ZP_17175570.1| hypothetical protein M1M_00642 [Brucella abortus bv. 1 str. NI259]
gi|62196011|gb|AAX74311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
bv. 1 str. 9-941]
gi|82615907|emb|CAJ10911.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
C-terminal:ATP/GTP-binding site motif A (P-loop)
[Brucella melitensis biovar Abortus 2308]
gi|189019693|gb|ACD72415.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
S19]
gi|237790210|gb|EEP64420.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
gi|260096784|gb|EEW80659.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
gi|260668223|gb|EEX55163.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260672159|gb|EEX58980.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|363400939|gb|AEW17909.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
A13334]
gi|374540723|gb|EHR12223.1| hypothetical protein M19_01208 [Brucella abortus bv. 1 str. NI474]
gi|374542573|gb|EHR14061.1| hypothetical protein M17_00641 [Brucella abortus bv. 1 str. NI435a]
gi|374542884|gb|EHR14369.1| hypothetical protein M1A_00643 [Brucella abortus bv. 1 str. NI486]
gi|374549951|gb|EHR21393.1| hypothetical protein M1G_01206 [Brucella abortus bv. 1 str. NI010]
gi|374550470|gb|EHR21909.1| hypothetical protein M1I_01207 [Brucella abortus bv. 1 str. NI016]
gi|374550754|gb|EHR22190.1| hypothetical protein M1E_01712 [Brucella abortus bv. 1 str. NI488]
gi|374558618|gb|EHR30011.1| hypothetical protein M1M_00642 [Brucella abortus bv. 1 str. NI259]
gi|374559616|gb|EHR31002.1| hypothetical protein M1K_00640 [Brucella abortus bv. 1 str. NI021]
Length = 482
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 42/271 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P +FLH+ ++ + K+ V R V GKK K L
Sbjct: 187 TMPPEITKLTEQFLHSPVRIEVAKASSTAKTVT----------QRLVKSGKKDWDKRAVL 236
Query: 113 LSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LIQS D+ ++ IIF + + S + + + D L +M+
Sbjct: 237 RDLIQSEGDSLKNAIIFCNRKKDVS-------------ELFRSLTRHEFDAGALHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R A L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR
Sbjct: 284 RARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSE 261
S + +T I+TS + L E+ + K E
Sbjct: 344 SGKAFT---IVTSSDTKYLAAIESMIGEKIE 371
>gi|23501822|ref|NP_697949.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
gi|161618894|ref|YP_001592781.1| ATP-dependent RNA helicase DDX17 [Brucella canis ATCC 23365]
gi|256369364|ref|YP_003106872.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
CCM 4915]
gi|260566511|ref|ZP_05836981.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
gi|261325038|ref|ZP_05964235.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
5K33]
gi|261752249|ref|ZP_05995958.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
5 str. 513]
gi|261754908|ref|ZP_05998617.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
3 str. 686]
gi|294852292|ref|ZP_06792965.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
gi|376274316|ref|YP_005114755.1| ATP-dependent RNA helicase [Brucella canis HSK A52141]
gi|376280615|ref|YP_005154621.1| DEAD/DEAH box helicase [Brucella suis VBI22]
gi|384224609|ref|YP_005615773.1| DEAD/DEAH box helicase [Brucella suis 1330]
gi|23347756|gb|AAN29864.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
1330]
gi|161335705|gb|ABX62010.1| Probable ATP-dependent RNA helicase DDX17 [Brucella canis ATCC
23365]
gi|255999524|gb|ACU47923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
CCM 4915]
gi|260156029|gb|EEW91109.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
gi|261301018|gb|EEY04515.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
5K33]
gi|261742002|gb|EEY29928.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
5 str. 513]
gi|261744661|gb|EEY32587.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
3 str. 686]
gi|294820881|gb|EFG37880.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
gi|343382789|gb|AEM18281.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
gi|358258214|gb|AEU05949.1| DEAD-box ATP dependent DNA helicase [Brucella suis VBI22]
gi|363402883|gb|AEW13178.1| ATP-dependent RNA helicase [Brucella canis HSK A52141]
Length = 482
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 42/271 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P +FLH+ ++ + K+ V R V GKK K L
Sbjct: 187 TMPPEITKLTEQFLHSPVRIEVAKASSTAKTVT----------QRLVKSGKKDWDKRAVL 236
Query: 113 LSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LIQS D+ ++ IIF + + S + + + D L +M+
Sbjct: 237 RDLIQSEGDSLKNAIIFCNRKKDVS-------------ELFRSLTRHEFDAGALHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R A L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR
Sbjct: 284 RARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSE 261
S + +T I+TS + L E+ + K E
Sbjct: 344 SGKAFT---IVTSSDTKYLAAIESMIGEKIE 371
>gi|17987318|ref|NP_539952.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
16M]
gi|225852449|ref|YP_002732682.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis ATCC 23457]
gi|256264057|ref|ZP_05466589.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
gi|260563958|ref|ZP_05834444.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
gi|260754681|ref|ZP_05867029.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260883707|ref|ZP_05895321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|265991030|ref|ZP_06103587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|265994867|ref|ZP_06107424.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|297248281|ref|ZP_06931999.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
gi|384211314|ref|YP_005600396.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
gi|384408416|ref|YP_005597037.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
gi|384445012|ref|YP_005603731.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis NI]
gi|17982999|gb|AAL52216.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
16M]
gi|225640814|gb|ACO00728.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis ATCC 23457]
gi|260153974|gb|EEW89066.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
gi|260674789|gb|EEX61610.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260873235|gb|EEX80304.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|262765980|gb|EEZ11769.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|263001814|gb|EEZ14389.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|263094252|gb|EEZ18122.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
gi|297175450|gb|EFH34797.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
gi|326408963|gb|ADZ66028.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
gi|326538677|gb|ADZ86892.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
gi|349743004|gb|AEQ08547.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis NI]
Length = 482
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 42/271 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P +FLH+ ++ + K+ V R V GKK K L
Sbjct: 187 TMPPEITKLTEQFLHSPVRIEVAKASSTAKTVT----------QRLVKSGKKDWDKRAVL 236
Query: 113 LSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LIQS D+ ++ IIF + + S + + + D L +M+
Sbjct: 237 RDLIQSEGDSLKNAIIFCNRKKDVS-------------ELFRSLTRHEFDAGALHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R A L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR
Sbjct: 284 RARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSE 261
S + +T I+TS + L E+ + K E
Sbjct: 344 SGKAFT---IVTSSDTKYLAAIESMIGEKIE 371
>gi|148559195|ref|YP_001258911.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
gi|148370452|gb|ABQ60431.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
ATCC 25840]
Length = 482
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 42/271 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P +FLH+ ++ + K+ V R V GKK K L
Sbjct: 187 TMPPEITKLTEQFLHSPVRIEVAKASSTAKTVT----------QRLVKSGKKDWDKRAVL 236
Query: 113 LSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LIQS D+ ++ IIF + + S + + + D L +M+
Sbjct: 237 RDLIQSEGDSLKNAIIFCNRKKDVS-------------ELFRSLTRHEFDAGALHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R A L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR
Sbjct: 284 RARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSE 261
S + +T I+TS + L E+ + K E
Sbjct: 344 SGKAFT---IVTSSDTKYLAAIESMIGEKIE 371
>gi|225627424|ref|ZP_03785461.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
gi|261222116|ref|ZP_05936397.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
B1/94]
gi|261758136|ref|ZP_06001845.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
gi|265998081|ref|ZP_06110638.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M490/95/1]
gi|225617429|gb|EEH14474.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
gi|260920700|gb|EEX87353.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
B1/94]
gi|261738120|gb|EEY26116.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
gi|262552549|gb|EEZ08539.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M490/95/1]
Length = 435
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 126/271 (46%), Gaps = 42/271 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P +FLH+ V + V + R V GKK K L
Sbjct: 187 TMPPEITKLTEQFLHSP----------VRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVL 236
Query: 113 LSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LIQS D+ ++ IIF + + S + + + D L +M+
Sbjct: 237 RDLIQSEGDSLKNAIIFCNRKKDVS-------------ELFRSLTRHEFDAGALHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R A L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR
Sbjct: 284 RARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSE 261
S + +T I+TS + L E+ + K E
Sbjct: 344 SGKAFT---IVTSSDTKYLAAIESMIGEKIE 371
>gi|163843207|ref|YP_001627611.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
gi|163673930|gb|ABY38041.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
Length = 482
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 42/271 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P +FLH+ ++ + K+ V R V GKK K L
Sbjct: 187 TMPPEITKLTEQFLHSPVRIEVAKASSTAKTVT----------QRLVKSGKKDWDKRAVL 236
Query: 113 LSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LIQS D+ ++ IIF + + S + + + D L +M+
Sbjct: 237 RDLIQSEGDSLKNAIIFCNRKKDVS-------------ELFRSLTRHEFDAGALHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R A L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR
Sbjct: 284 RARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSE 261
S + +T I+TS + L E+ + K E
Sbjct: 344 SGKAFT---IVTSSDTKYLAAIESMIGEKIE 371
>gi|399887626|ref|ZP_10773503.1| ATP-dependent RNA helicase [Clostridium arbusti SL206]
Length = 380
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 130/266 (48%), Gaps = 35/266 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +++ ++IDE D L + + +S +K ++ + + +RQ + SAS+
Sbjct: 132 GRIFELIKKRKITAHTIKTIIIDECDKLLDKN-NISKVKDIIKT--TMRDRQLMAFSASV 188
Query: 62 PQHRRFLHNCIQQKWT----KSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQ 117
+ + ++ + ++++++ HVN H + + ++ K++ L +I
Sbjct: 189 SDSTLNSASLLMKEPSIIKIENEILNTHVN----------HMYFLSEQRDKFELLRKIIA 238
Query: 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAAS 176
S+ P IIF+ + E +DF+ + + + L R +
Sbjct: 239 SEEPSKSIIFINKSVE--------------IDFIVSKLQYHNISCYGLYGNAKKEERKRA 284
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + R G LV++DIAARG+D+ + THI+N DLP +YLHR GRTGR S T
Sbjct: 285 LEDFRSGKIKFLVASDIAARGLDIKDITHIFNLDLPEDPKEYLHRVGRTGRMNTS---GT 341
Query: 237 VTSIITSEELFVLQRYENELKFKSEE 262
SII+ +L +++YE +E
Sbjct: 342 TISIISKNDLSTIKKYEKNFNLDIKE 367
>gi|375308018|ref|ZP_09773305.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
gi|375080349|gb|EHS58570.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
Length = 526
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 121/250 (48%), Gaps = 34/250 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + KLE V +V+DE D + + + + S+ K + + RQT+ SA
Sbjct: 129 GRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQV-----PDERQTMLFSA 183
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + + L + V+ V+A PL + ++ ++ K++ L LI +
Sbjct: 184 TMPPNIKRLAEQFLKDPEHVSVIPKQVSA--PL---IEQAYIEVPERQKFEALSRLIDME 238
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG---SSDVLLLEEEMNFNSRAAS 176
+PE I+F T VD L+ + + S+D L +++ N R A
Sbjct: 239 SPELAIVFG--------------RTKRRVDELAEALQKRGYSADGL--HGDLSQNQRDAV 282
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ + R G +LV+TD+AARG+D+ TH+ NFDLP+ Y+HR GRTGR E W
Sbjct: 283 MRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAW- 341
Query: 237 VTSIITSEEL 246
S +T E+
Sbjct: 342 --SFVTPREI 349
>gi|322387454|ref|ZP_08061064.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
700779]
gi|419842756|ref|ZP_14366093.1| DEAD/DEAH box helicase [Streptococcus infantis ATCC 700779]
gi|421277111|ref|ZP_15727931.1| ATP-dependent RNA helicase DeaD [Streptococcus mitis SPAR10]
gi|321141983|gb|EFX37478.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
700779]
gi|385703701|gb|EIG40814.1| DEAD/DEAH box helicase [Streptococcus infantis ATCC 700779]
gi|395876392|gb|EJG87468.1| ATP-dependent RNA helicase DeaD [Streptococcus mitis SPAR10]
Length = 524
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLHDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
D PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 DQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|265984026|ref|ZP_06096761.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
83/13]
gi|264662618|gb|EEZ32879.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
83/13]
Length = 482
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 42/271 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P +FLH+ ++ + K+ V R V GKK K L
Sbjct: 187 TMPPEITKLTEQFLHSPVRIEVAKASSTAKTVT----------QRLVKSGKKDWDKRAVL 236
Query: 113 LSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LIQS D+ ++ IIF + + S + + + D L +M+
Sbjct: 237 RDLIQSEGDSLKNAIIFCNRKKDVS-------------ELFRSLTRHEFDAGALHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R A L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR
Sbjct: 284 RARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSE 261
S + +T I+TS + L E+ + K E
Sbjct: 344 SGKAFT---IVTSSDTKYLAAIESMIGEKIE 371
>gi|440781688|ref|ZP_20959916.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
pasteurianum DSM 525]
gi|440220406|gb|ELP59613.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
pasteurianum DSM 525]
Length = 522
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 132/258 (51%), Gaps = 23/258 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL ++ LV+DE D + N + +++++ + +S RQT+ SA++
Sbjct: 131 GRVLDHIRRKTLKLNNLNYLVLDEADEMLNMG-FIDDIEEIIKNTNS--ERQTLLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + L + + K DV H+ + S + + + ++L ++ P
Sbjct: 188 PKPIKKL----SENYLKKDVKHIQILKKSLTVSKIDQYYYEVHNNTRLESLCRILDISEP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
ES IIF ++KK+ + +T+ S KG ++ + +M +R ++L + +
Sbjct: 244 ESAIIFC-----RTKKSVDELVSTM-------SSKGY-NIEGMHGDMKQKNRLSTLNKFK 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G L +TD+AARGID+ TH+ N++LP+ Y+HR GRTGR ++ T S+I
Sbjct: 291 NGNLTFLAATDVAARGIDVENITHVINYELPQDTESYVHRIGRTGR---ANRSGTAISLI 347
Query: 242 TSEELFVLQRYENELKFK 259
T ++ L++ E ++K K
Sbjct: 348 TRKDFTKLKQIEKDIKSK 365
>gi|335430691|ref|ZP_08557579.1| DEAD-box ATP dependent DNA helicase [Haloplasma contractile
SSD-17B]
gi|335430711|ref|ZP_08557598.1| DEAD-box ATP dependent DNA helicase [Haloplasma contractile
SSD-17B]
gi|334887522|gb|EGM25849.1| DEAD-box ATP dependent DNA helicase [Haloplasma contractile
SSD-17B]
gi|334887717|gb|EGM26039.1| DEAD-box ATP dependent DNA helicase [Haloplasma contractile
SSD-17B]
Length = 383
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 134/265 (50%), Gaps = 26/265 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+ K +V+ +VIDE D + + + ++ +K ++ + + +RQ + SASI
Sbjct: 133 GRIFELIKAKKIKAHTVKTIVIDEADRMVDKN-NLNDVKNIIKT--TQKDRQLMMFSASI 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSLIQSDA 120
+ + + N + ++ + V+ S ++H ++ C ++ K +TL LI +
Sbjct: 190 TERTKEIGNDLMKEPVIIEAKQQRVS------STINHLYITCPQQRDKNETLRKLITALQ 243
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F+ +SE + N D + + GS+ +EE R +L
Sbjct: 244 PERAIVFLN-KSELIEATTNKLQHH---DIEAFNISGSA----TKEE-----RQLALQHF 290
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R G +LVS+D++ARG+D+ THI N DLP+ YLHR GRTGRK ++ T SI
Sbjct: 291 RNGKINILVSSDLSARGLDIEGLTHIINLDLPQDPNVYLHRVGRTGRK---GQEGTAISI 347
Query: 241 ITSEELFVLQRYENELKFKSEELTL 265
I E LQ YE +LK E L
Sbjct: 348 IAEHERNWLQNYEQKLKIDINEKVL 372
>gi|261213932|ref|ZP_05928213.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
gi|260915539|gb|EEX82400.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
Length = 482
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 42/271 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P +FLH+ ++ + K+ V R V GKK K L
Sbjct: 187 TMPPEITKLTEQFLHSPVRIEVAKASSTAKTVT----------QRLVKSGKKDWDKRAVL 236
Query: 113 LSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LIQS D+ ++ IIF + + S + + + D L +M+
Sbjct: 237 RDLIQSEGDSLKNAIIFCNRKKDVS-------------ELFRSLTRHEFDAGALHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R A L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR
Sbjct: 284 RARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSE 261
S + +T I+TS + L E+ + K E
Sbjct: 344 SGKAFT---IVTSSDTKYLAAIESMIGEKIE 371
>gi|407473991|ref|YP_006788391.1| DEAD/DEAH box helicase [Clostridium acidurici 9a]
gi|407050499|gb|AFS78544.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium acidurici 9a]
Length = 382
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 127/258 (49%), Gaps = 23/258 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+ +V+ LV+DE D L + K V ++ ++ + Q + SA++
Sbjct: 132 GRILELIKNRKIGAHNVRTLVLDEGDRLLDE-KNVDGVRNVIKTMQK-KQLQIMLFSATV 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+H N + +++ V I + + H ++ C ++ K L L+ S P
Sbjct: 190 NEHAV---NMAKSLMKDPEILIVKEKTI--VNPDIDHIYITCDQRDKIVILRKLVASIKP 244
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I+F+ + E TTL + + G L E + R ++ R
Sbjct: 245 KRAIVFINKSEE-------IEITTLKLRYHHLKAYG------LYGESSKEDRKKAMDMFR 291
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G LLV++D+AARG+D+ + THI+N DLP ++ +Y+HR GRT R + + T SII
Sbjct: 292 SGKIQLLVASDLAARGLDIKDVTHIFNLDLPPTSKEYVHRVGRTAR---AGKSGTAVSII 348
Query: 242 TSEELFVLQRYENELKFK 259
T +++ +++RYE +L K
Sbjct: 349 TKKDIPIIKRYERDLNIK 366
>gi|390456495|ref|ZP_10242023.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus peoriae
KCTC 3763]
Length = 526
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 121/250 (48%), Gaps = 34/250 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + KLE V +V+DE D + + + + S+ K + + RQT+ SA
Sbjct: 129 GRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVP-----DERQTMLFSA 183
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + + L + V+ V+A PL + ++ ++ K++ L LI +
Sbjct: 184 TMPPNIKRLAEQFLKDPEHVSVIPKQVSA--PL---IEQAYIEVPERQKFEALSRLIDME 238
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG---SSDVLLLEEEMNFNSRAAS 176
+PE I+F T VD L+ + + S+D L +++ N R A
Sbjct: 239 SPELAIVFG--------------RTKRRVDELAEALQKRGYSADGL--HGDLSQNQRDAV 282
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ + R G +LV+TD+AARG+D+ TH+ NFDLP+ Y+HR GRTGR E W
Sbjct: 283 MRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAW- 341
Query: 237 VTSIITSEEL 246
S +T E+
Sbjct: 342 --SFVTPREI 349
>gi|417915918|ref|ZP_12559512.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis bv. 2
str. SK95]
gi|342831712|gb|EGU66023.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis bv. 2
str. SK95]
Length = 525
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 125/257 (48%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLHDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
Length = 509
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 122/256 (47%), Gaps = 30/256 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + LI++ + KL +V+ LV+DE D + + + S+ + L + RQT+ SA
Sbjct: 127 GRILDLIKRGVLKLNNVETLVLDEADEMLKMGFVEDIESIIRELPT-----ERQTLLFSA 181
Query: 60 SIPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
++PQ +R N + +D VHV + + + C K+ L I
Sbjct: 182 TVPQEIKRIADNFM------NDPATVHVKTKQMTADLIDQYYSRCKDYEKFDLLTRFIDV 235
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
PE I+F ++K+ + + L+ Y + +++ + R L
Sbjct: 236 QNPELSIVFA-----RTKRRVDEVARGLV----ERGYSAEG----IHGDLSQDKRLGVLR 282
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR E +VT
Sbjct: 283 NFKNGKLDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRA--GKEGMSVT 340
Query: 239 SIITSEELFVLQRYEN 254
+TS E+ L+ E+
Sbjct: 341 -FVTSNEMSYLRTIED 355
>gi|187779628|ref|ZP_02996101.1| hypothetical protein CLOSPO_03224 [Clostridium sporogenes ATCC
15579]
gi|187773253|gb|EDU37055.1| DEAD/DEAH box helicase [Clostridium sporogenes ATCC 15579]
Length = 421
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 128/263 (48%), Gaps = 28/263 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLF--NSSKQVSSLKKLLASYSSCNNRQTVFASA 59
G + +LI+K +V+ +VIDE D L N+ K V + K ++ RQ + SA
Sbjct: 132 GRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKDVIK-----ATLRERQLMLFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+I + I + K + V V + + H ++ + + + L LI +
Sbjct: 187 TITESTL----NIAKDLMKEPQI-VKVKEKNTVNENIKHLYITGEHRERIEILRKLIAAT 241
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
P+ I+F+ E TTL + + + K E+E R +L +
Sbjct: 242 NPKRAIVFINRNEE-------IELTTLKLQY--HKIKAYGIYGAAEKE----QRKKALED 288
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R G +LVS+D++ARG+D+ + THI+N DLP + +YLHR GRTGR + ++ T S
Sbjct: 289 FRLGKIQILVSSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGR---ASKEGTAIS 345
Query: 240 IITSEELFVLQRYENELKFKSEE 262
IIT +E+ ++++YE E EE
Sbjct: 346 IITEKEIPLIRKYEKEFNINIEE 368
>gi|167756706|ref|ZP_02428833.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
gi|237732712|ref|ZP_04563193.1| helicase [Mollicutes bacterium D7]
gi|374627718|ref|ZP_09700120.1| hypothetical protein HMPREF0978_03440 [Coprobacillus sp.
8_2_54BFAA]
gi|167702881|gb|EDS17460.1| DEAD/DEAH box helicase [Clostridium ramosum DSM 1402]
gi|229384207|gb|EEO34298.1| helicase [Coprobacillus sp. D7]
gi|373912957|gb|EHQ44800.1| hypothetical protein HMPREF0978_03440 [Coprobacillus sp.
8_2_54BFAA]
Length = 535
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 137/267 (51%), Gaps = 25/267 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+ +++ KL V+ +V+DE D + N V ++ +L ++RQT+ SA++
Sbjct: 132 GRVMDLMRRNVLKLNDVKFVVLDEADEMLNMG-FVEDIETILEKVD--DDRQTILFSATM 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I Q + + HV V + + + + + +K +++ + LI
Sbjct: 189 PAGIK----KIAQNYMHDNFEHVAVLSKQTTATSVKQFYYEVKQKDRFEAMCRLIDVANV 244
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
++GIIF ++K++ VD ++ + ++ +V + +++ N R +L +
Sbjct: 245 QTGIIFC-----RTKRS---------VDEVTEQMQQANYNVEAMHGDLSQNHRMNTLRKF 290
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G L++TD+AARGID+ TH+ N++LP+ Y+HR GRTGR +D++ SI
Sbjct: 291 KKGTINFLIATDVAARGIDVENVTHVINYELPQDIESYVHRIGRTGR---ADKEGQAYSI 347
Query: 241 ITSEELFVLQRYENELKFKSEELTLQT 267
IT E L++ E K + T+ T
Sbjct: 348 ITPREKGFLRQIERVTKSSITKATIPT 374
>gi|310641357|ref|YP_003946115.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|386040399|ref|YP_005959353.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
polymyxa SC2]
gi|343096437|emb|CCC84646.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
Length = 525
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 121/250 (48%), Gaps = 34/250 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + KLE V +V+DE D + + + + S+ K + + RQT+ SA
Sbjct: 129 GRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVP-----DERQTMLFSA 183
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + + L + V+ V+A PL + ++ ++ K++ L LI +
Sbjct: 184 TMPPNIKRLAEQFLKDPEHVSVIPKQVSA--PL---IDQAYIEVPERQKFEALSRLIDME 238
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG---SSDVLLLEEEMNFNSRAAS 176
+PE I+F T VD L+ + + S+D L +++ N R A
Sbjct: 239 SPELAIVFG--------------RTKRRVDELAEALQKRGYSADGL--HGDLSQNQRDAV 282
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ + R G +LV+TD+AARG+D+ TH+ NFDLP+ Y+HR GRTGR E W
Sbjct: 283 MRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAW- 341
Query: 237 VTSIITSEEL 246
S +T E+
Sbjct: 342 --SFVTPREI 349
>gi|261218712|ref|ZP_05932993.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M13/05/1]
gi|261314321|ref|ZP_05953518.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|261317582|ref|ZP_05956779.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261321790|ref|ZP_05960987.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M644/93/1]
gi|265988616|ref|ZP_06101173.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|340790566|ref|YP_004756031.1| ATP-dependent RNA helicase [Brucella pinnipedialis B2/94]
gi|260923801|gb|EEX90369.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M13/05/1]
gi|261294480|gb|EEX97976.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M644/93/1]
gi|261296805|gb|EEY00302.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261303347|gb|EEY06844.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|264660813|gb|EEZ31074.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|340559025|gb|AEK54263.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella
pinnipedialis B2/94]
Length = 482
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 42/271 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P +FLH+ ++ + K+ V R V GKK K L
Sbjct: 187 TMPPEITKLTEQFLHSPVRIEVAKASSTAKTVT----------QRLVKSGKKDWDKRAVL 236
Query: 113 LSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LIQS D+ ++ IIF + + S + + + D L +M+
Sbjct: 237 RDLIQSEGDSLKNAIIFCNRKKDVS-------------ELFRSLTRHEFDAGALHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R A L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR
Sbjct: 284 RARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSE 261
S + +T I+TS + L E+ + K E
Sbjct: 344 SGKAFT---IVTSSDTKYLAAIESMIGEKIE 371
>gi|424834348|ref|ZP_18259059.1| DEAD-box ATP dependent DNA helicase [Clostridium sporogenes PA
3679]
gi|365978694|gb|EHN14763.1| DEAD-box ATP dependent DNA helicase [Clostridium sporogenes PA
3679]
Length = 421
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 128/263 (48%), Gaps = 28/263 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLF--NSSKQVSSLKKLLASYSSCNNRQTVFASA 59
G + +LI+K +V+ +VIDE D L N+ K V + K ++ RQ + SA
Sbjct: 132 GRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKDVIK-----ATLRERQLMLFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+I + I + K + V V + + H ++ + + + L LI +
Sbjct: 187 TITESTL----NIAKDLMKEPQI-VKVKEKNTVNENIKHLYITGEHRERIEILRKLIAAT 241
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
P+ I+F+ E TTL + + + K E+E R +L +
Sbjct: 242 NPKRAIVFINRNEE-------IELTTLKLQY--HKIKAYGIYGAAEKE----QRKKALED 288
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R G +LVS+D++ARG+D+ + THI+N DLP + +YLHR GRTGR + ++ T S
Sbjct: 289 FRLGKIQILVSSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGR---ASKEGTAIS 345
Query: 240 IITSEELFVLQRYENELKFKSEE 262
IIT +E+ ++++YE E EE
Sbjct: 346 IITEKEIPLVRKYEKEFNINIEE 368
>gi|320353120|ref|YP_004194459.1| DEAD/DEAH box helicase [Desulfobulbus propionicus DSM 2032]
gi|320121622|gb|ADW17168.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
DSM 2032]
Length = 428
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 123/250 (49%), Gaps = 22/250 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ L V L++DE D +F+ + ++++L + RQ++ SA++
Sbjct: 129 GRLLDLLNDKAVDLSRVDTLILDEADHMFDKGF-LPDIRRILRRLPA--ERQSLVFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R L I +D V V +N + + S + HR ++ K LL L++ +A
Sbjct: 186 PDEIRHLAEDIL-----TDPVTVQINPTRSVQS-ISHRLYAVEQEQKTDLLLQLLKDEAM 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ +IF + KA N L + +K +S L+ ++ N R +L +
Sbjct: 240 ATTLIF----TRTKHKAKN-----LAQKLAQSGFKATS----LQGNLSQNRRQQALDGFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TDIAARGID+ +H+ N+D+P +A Y+HR GRTGR + E T +
Sbjct: 287 TGAFTILVATDIAARGIDVNGISHVINYDMPDTAEAYIHRTGRTGRAARTGEALTFATRE 346
Query: 242 TSEELFVLQR 251
S + +++R
Sbjct: 347 DSRMIRLIER 356
>gi|306840451|ref|ZP_07473211.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
gi|306289585|gb|EFM60800.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
Length = 482
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 127/271 (46%), Gaps = 42/271 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P +FLH+ ++ + K+ V R V GKK K L
Sbjct: 187 TMPPEITKLTEQFLHSPVRIEVAKASSTAKTVT----------QRLVKSGKKDWDKRAVL 236
Query: 113 LSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LIQS D ++ IIF + + S + + + D L +M+
Sbjct: 237 RDLIQSEGDTLKNAIIFCNRKKDVS-------------ELFRSLTRHEFDAGALHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R A L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR
Sbjct: 284 RARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSE 261
S + +T I+TS + L E+ + K E
Sbjct: 344 SGKAFT---IVTSSDTKYLAAIESMIGEKIE 371
>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
E681]
gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
polymyxa E681]
Length = 529
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 121/250 (48%), Gaps = 34/250 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + KLE V +V+DE D + + + + S+ K + + RQT+ SA
Sbjct: 129 GRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQV-----PDERQTMLFSA 183
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + + L + V+ V+A PL + ++ ++ K++ L LI +
Sbjct: 184 TMPANIKRLAEQFLKNPEHVSVIPKQVSA--PL---IDQAYIEVPERQKFEALSRLIDME 238
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG---SSDVLLLEEEMNFNSRAAS 176
+PE I+F T VD L+ + + S+D L +++ N R A
Sbjct: 239 SPELAIVFG--------------RTKRRVDELAEALQKRGYSADGL--HGDLSQNQRDAV 282
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ + R G +LV+TD+AARG+D+ TH+ NFDLP+ Y+HR GRTGR E W
Sbjct: 283 MRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAW- 341
Query: 237 VTSIITSEEL 246
S +T E+
Sbjct: 342 --SFVTPREI 349
>gi|157374029|ref|YP_001472629.1| ATP-dependent RNA helicase SrmB [Shewanella sediminis HAW-EB3]
gi|157316403|gb|ABV35501.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 408
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 122/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNRQTVFASA 59
G L + ++K F E V++LVIDE D + + S V +L + S +QT+ SA
Sbjct: 132 GRLMEYLDKGQFNAEEVEMLVIDEADRMLDMGFSAAVETL-----AIESVGRKQTMLFSA 186
Query: 60 SIPQHR--RFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKMKYQTLLSLI 116
++ RF H + +D V V A + + +H I K K+ L S++
Sbjct: 187 TLEGSDVGRFSHQLL------TDPVKVEAEAPRSEKAKIHQWIHIADNKDHKFNLLCSIL 240
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
Q + + I+FV + + G + F+ +M R +
Sbjct: 241 QQEETKRAIVFVKTREAVASLEGLLQKAGIPCSFMRG-------------DMEQKQRFQA 287
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L +G +L++TD+AARGID+ + TH+ NFD+PRSA Y+HR GRTGR + K T
Sbjct: 288 LGRFTKGEVNVLLATDVAARGIDVDDITHVINFDMPRSADTYVHRIGRTGR---AGAKGT 344
Query: 237 VTSIITSEELFVLQRYE 253
S++ + ++ V+ + E
Sbjct: 345 AISLVEAHDIRVVGKIE 361
>gi|359413095|ref|ZP_09205560.1| DEAD/DEAH box helicase domain protein [Clostridium sp. DL-VIII]
gi|357171979|gb|EHJ00154.1| DEAD/DEAH box helicase domain protein [Clostridium sp. DL-VIII]
Length = 407
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 132/262 (50%), Gaps = 26/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI+K +++ +VIDE D L + + + K ++ + + +RQ + SASI
Sbjct: 133 GRILDLIQKKKITAHTIKTIVIDEGDNLLDPKRDAIT-KNIIKT--TMKDRQLMVFSASI 189
Query: 62 -PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P+ + ++ D + + + + + H F++C ++ K++TL L+ +
Sbjct: 190 KPETLETAKSLMK------DPIILKTESKPSINPNIKHIFIVCERRDKFETLRKLLVAVN 243
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE IIFV + + TT+ +++ S D + +++ R ++
Sbjct: 244 PEKAIIFVNDNDD-------IELTTVKLNY------HSKDCFAMTGKISKEDRKLAIESF 290
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R G +LVS+D+ ARG+D+ TH+++ DLP +YLHR+GRT R + T +
Sbjct: 291 RNGKIKILVSSDVTARGLDVEGVTHVFHLDLPLKLNEYLHRSGRTAR---GNAHGTSICL 347
Query: 241 ITSEELFVLQRYENELKFKSEE 262
T+++L ++++YE E + E+
Sbjct: 348 ATTKQLNIIKKYEKEFNIQFEQ 369
>gi|354580517|ref|ZP_08999422.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353202948|gb|EHB68397.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 529
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 31/255 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + +L+ VQ +V+DE D + + + S+ KL+ NRQT+ SA
Sbjct: 129 GRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMDDIQSILKLVP-----ENRQTLLFSA 183
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + + L + + V+ HV+A PL + ++ ++ K++ L L+ +
Sbjct: 184 TMPPNIQKLASQFLKDPEHVSVIPKHVSA--PL---IDQAYIEVPERQKFEALSRLLDME 238
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG---SSDVLLLEEEMNFNSRAAS 176
+PE I+F T VD L+ + + S+D L +++ + R
Sbjct: 239 SPELAIVFG--------------RTKRRVDELAEALQKRGYSADGL--HGDLSQHQRDTV 282
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ + R G +LV+TD+AARG+D+ TH+ NFDLP+ Y+HR GRTGR W+
Sbjct: 283 MRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWS 342
Query: 237 VTSIITSEELFVLQR 251
+ + L+ ++R
Sbjct: 343 FVTPREMDHLYFIER 357
>gi|417850281|ref|ZP_12496192.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1080]
gi|339452963|gb|EGP65581.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1080]
Length = 524
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|389690958|ref|ZP_10179851.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
gi|388589201|gb|EIM29490.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
Length = 502
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 124/261 (47%), Gaps = 40/261 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKLVPF-----TRQTLFFSA 185
Query: 60 SIPQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTL 112
++P + FLHN ++ V V S + R V G++ K +TL
Sbjct: 186 TMPPEIQRLADAFLHNPVK----------VEVARAASTASTITQRLVATGREDYEKRETL 235
Query: 113 LSLIQSDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNF 170
LI+ ++ I+F + + V L S K D + L +M+
Sbjct: 236 RELIRGATDLQNAIVFCNRKRD--------------VAVLHRSLQKHGFDAVALHGDMDQ 281
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
++R A+L R G +LV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 282 HARMAALDSFRSGEMPILVASDVAARGLDIPAVSHVFNYDIPHHAEDYVHRIGRTGRAGR 341
Query: 231 SDEKWTVTSIITSEELFVLQR 251
S + +T+ + L +++
Sbjct: 342 SGQSFTLVGPGDEKSLAAIEK 362
>gi|345858122|ref|ZP_08810531.1| DEAD/DEAH box helicase family protein [Desulfosporosinus sp. OT]
gi|344328789|gb|EGW40158.1| DEAD/DEAH box helicase family protein [Desulfosporosinus sp. OT]
Length = 389
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 129/268 (48%), Gaps = 30/268 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLF--NSSKQVSSLKKLLASYSSCNNRQTVFASA 59
G + +LI+K ++++ +V+DE D L N+S V ++ K S + SA
Sbjct: 132 GRILELIQKKRITAQTIKTIVLDEADRLLDENNSLTVKAVIKTTLSRTQLLLFSATLPSA 191
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++ + L N +V+ + + + P+ H F + ++ K + L LI+
Sbjct: 192 TLQRASEVLKN--------PEVIRI-TDKVMIAPTITHQYF-LAEQRDKIEVLRKLIRLV 241
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
P +IF+ + E K GN L + + Y G+ N R ++ +
Sbjct: 242 IPTRALIFINKSEEIEKMVGNLKFHNLESEGI---YGGA----------NKTDRRKAMDD 288
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R G LLV++D+AARG+D+ THI+N DLP YLHR GRTGR + E T S
Sbjct: 289 FRSGKISLLVASDLAARGLDIKGITHIFNLDLPEDPQLYLHRVGRTGR---AGESGTAIS 345
Query: 240 IITSEELFVLQRYEN--ELKFKSEELTL 265
I++++E+ ++R E+ E+ +E+ L
Sbjct: 346 IVSAKEVSYIKRLESAFEINISPKEMLL 373
>gi|306843833|ref|ZP_07476431.1| DEAD-box ATP dependent DNA helicase [Brucella inopinata BO1]
gi|306275911|gb|EFM57627.1| DEAD-box ATP dependent DNA helicase [Brucella inopinata BO1]
Length = 482
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 127/271 (46%), Gaps = 42/271 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P +FLH+ ++ + K+ V R V GKK K L
Sbjct: 187 TMPPEITKLTEQFLHSPVRIEVAKASSTAKTVT----------QRLVKSGKKDWDKRAVL 236
Query: 113 LSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LIQS D ++ IIF + + S + + + D L +M+
Sbjct: 237 RDLIQSEGDTLKNAIIFCNRKKDVS-------------ELFRSLTRHEFDAGALHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R A L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR
Sbjct: 284 RARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSE 261
S + +T I+TS + L E+ + K E
Sbjct: 344 SGKAFT---IVTSSDTKYLAAIESMIGEKIE 371
>gi|451820172|ref|YP_007456373.1| superfamily II DNA and RNA helicase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451786151|gb|AGF57119.1| superfamily II DNA and RNA helicase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 407
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 133/265 (50%), Gaps = 28/265 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI+K +++ +VIDE D L + + + + K ++ + + +RQ + SASI
Sbjct: 133 GRILDLIQKKKITAHTIKTIVIDEADNLLDPKRALVT-KNIIKT--TMRDRQLMIFSASI 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKP-LPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
++ T + KP + + H F++C ++ K++TL L+ +
Sbjct: 190 KAE------TLETAKTLMKEPLIIKGEDKPQINPNIEHMFIVCERRDKFETLRKLLVAVK 243
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE IIFV + + TT+ +++ S D + +++ R ++
Sbjct: 244 PEKAIIFVNDNDD-------IELTTVKLNY------HSKDCFAMTGKISKEDRKLAIESF 290
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G +LVS+D+ ARG+D+ TH+++ DLP +YLHRAGRT R D T +
Sbjct: 291 KNGKIKILVSSDVTARGLDVEGITHVFHLDLPLKLNEYLHRAGRTAR---GDAHGTSICV 347
Query: 241 ITSEELFVLQRYENE--LKFKSEEL 263
T ++L ++++YE E ++FK +++
Sbjct: 348 TTIKQLSIIKKYEREFNVEFKQKKV 372
>gi|342164201|ref|YP_004768840.1| cold-shock DEAD box protein A [Streptococcus pseudopneumoniae
IS7493]
gi|341934083|gb|AEL10980.1| cold-shock DEAD box protein A [Streptococcus pseudopneumoniae
IS7493]
Length = 524
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|407476475|ref|YP_006790352.1| ATP-dependent RNA helicase CshA [Exiguobacterium antarcticum B7]
gi|407060554|gb|AFS69744.1| ATP-dependent RNA helicase CshA [Exiguobacterium antarcticum B7]
Length = 539
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + L+ VQ +++DE D + N V ++K+L + RQT+ SA++
Sbjct: 129 GRLMDHMNRKTLNLDHVQTVILDEADEMLNMGF-VEDIEKILGTLPES--RQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
PQ R + + T H+ V A + + F+ + K+ L LI +D+P
Sbjct: 186 PQQIRKIADRFMTTPT-----HIKVKAKEMTVENIDQSFIELKENQKFDVLCRLIDTDSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E IIF ++KK + + L+ Y L ++ R + +
Sbjct: 241 ELSIIF-----GRTKKRVDEMTEGLV----QRGYTADG----LHGDLTQAKRDQVIRRFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR
Sbjct: 288 KGTIDILVATDVAARGLDITGVTHVYNFDVPQDPESYVHRIGRTGR 333
>gi|91976935|ref|YP_569594.1| DEAD/DEAH box helicase-like protein [Rhodopseudomonas palustris
BisB5]
gi|91683391|gb|ABE39693.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
Length = 500
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 118/237 (49%), Gaps = 40/237 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL+ RQT+F +A
Sbjct: 131 GRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERVCKLVP-----FTRQTLFFTA 185
Query: 60 SIPQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P R FLHN + + +K V V + V CG++ K +TL
Sbjct: 186 TMPPEIRRITETFLHNPEKIEVSKPASTAVTVTQSQ----------VPCGREPHEKRETL 235
Query: 113 LSLIQSDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNF 170
LI++ ++ IIF + E V L+ S K V L +M+
Sbjct: 236 RRLIRAATDLQNAIIFCNRKRE--------------VALLAKSLQKHGFSVGALHGDMDQ 281
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++R A+L + R+G +LV++D+AARG+D+PE +H++NFD+P DY+HR GRTGR
Sbjct: 282 SARTAALDQFRKGELPILVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGR 338
>gi|429767290|ref|ZP_19299498.1| DEAD/DEAH box helicase [Clostridium celatum DSM 1785]
gi|429181345|gb|EKY22516.1| DEAD/DEAH box helicase [Clostridium celatum DSM 1785]
Length = 390
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 129/269 (47%), Gaps = 34/269 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI+K +++ +V+DE D L +K + +K ++ + + +RQ +F SASI
Sbjct: 133 GRVLDLIKKKKITAHTIKTIVMDEADSLLAKNK-ATIIKDIIKA--TMRDRQLMFFSASI 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKP-----LPSCLHHRFVICGKKMKYQTLLSLI 116
N KS V V + +K L + H F+ C + +++TL L+
Sbjct: 190 --------NATTLDIAKSLVKEVEI--VKSEEKSVLNPNISHMFITCDFRDRFETLRKLL 239
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
++ P I+FV +E N S + G++ +E+ R S
Sbjct: 240 AAETPTRAIVFVNNSTE----LQNINEKLDYHKVKSTAIYGNAS----KEQ-----RQRS 286
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ R G +LVS+D++ARG+D+PE THI + D P + +YLHRAGRT R S +
Sbjct: 287 IEAFRNGKFNVLVSSDVSARGLDIPEITHIISMDFPANPDEYLHRAGRTARGTLS---GS 343
Query: 237 VTSIITSEELFVLQRYENELKFKSEELTL 265
I T ++L ++ Y+ K K +E+ L
Sbjct: 344 SICIATKKDLNAIKTYQKAFKIKFKEMNL 372
>gi|383938412|ref|ZP_09991624.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae SK674]
gi|418973302|ref|ZP_13521309.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383349699|gb|EID27622.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383714714|gb|EID70708.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae SK674]
Length = 526
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|307709536|ref|ZP_07645990.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
gi|307619667|gb|EFN98789.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
Length = 523
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|150016694|ref|YP_001308948.1| DEAD/DEAH box helicase [Clostridium beijerinckii NCIMB 8052]
gi|149903159|gb|ABR33992.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
NCIMB 8052]
Length = 402
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 133/263 (50%), Gaps = 28/263 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI K +++ +VIDE D L + + S++ K + S+ +RQ + SASI
Sbjct: 133 GRILDLIRKKKITAHTIKTIVIDEGDNLLDPKR--SNVTKDIVK-STMRDRQLMLFSASI 189
Query: 62 -PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSC-LHHRFVICGKKMKYQTLLSLIQSD 119
P+ + +++ + + KPL + + H F++C ++ K++TL ++ +
Sbjct: 190 KPETLETAKSLMKEPI-------IIKSEDKPLINPNIEHMFILCERRDKFETLRKVLVAV 242
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE IIFV + TT +++ S D + +++ R ++
Sbjct: 243 KPEKAIIFVNNNED-------IELTTAKLNY------HSKDCFAMTGKISKEDRKLAIES 289
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R G +LVS+D+ ARG+D+ + TH+++ DLP +YLHR+GRT R + T
Sbjct: 290 FRTGKIKILVSSDVTARGLDVADITHVFHLDLPLKLNEYLHRSGRTAR---GNAHGTSIC 346
Query: 240 IITSEELFVLQRYENELKFKSEE 262
I+T ++L ++++YE E + +E
Sbjct: 347 ILTVQQLNIIKKYEREFNIQFKE 369
>gi|385259821|ref|ZP_10037981.1| DEAD/DEAH box helicase [Streptococcus sp. SK140]
gi|385193235|gb|EIF40614.1| DEAD/DEAH box helicase [Streptococcus sp. SK140]
Length = 525
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 30/256 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+P+ +R +++ HV + A + + ++ ++ K+ T+ L+ +
Sbjct: 184 MPEAIKRIGVQFMKEPE------HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVE 237
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 238 QPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 284 DFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT-- 341
Query: 239 SIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 -FVAPNEMGYLQIIEN 356
>gi|315649347|ref|ZP_07902436.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315275335|gb|EFU38704.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 448
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 126/265 (47%), Gaps = 26/265 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LIE K+ V +V+DEVD +FN + ++L S+ +RQ VF SA++
Sbjct: 131 GRVRELIEIRKLKMHQVTTIVVDEVDQVFNLGG-AGDVDRIL--RSALRDRQLVFLSATV 187
Query: 62 -PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P+ + + Q V + ++ + PS L H + + ++ K L +++
Sbjct: 188 SPETAELVKKEMDQP------VEIGIDPEQRTPSALEHYYFVTEERDKLDMLRRVVRHYN 241
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+ I+FV NA V+ N Y G + + + +R+ L
Sbjct: 242 PDRAIVFV-----------NATEDLAEVEAKLN-YLGLNAAAIYGDADKM-TRSRVLNAF 288
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R+G LLV++D+AARG+D+ + N+D P A Y HRAGRTGR S ++
Sbjct: 289 REGRTKLLVASDVAARGLDIEGLGMVINYDPPIDAEHYTHRAGRTGRMGRS---GMAITL 345
Query: 241 ITSEELFVLQRYENELKFKSEELTL 265
+T + F+++++ EL EE L
Sbjct: 346 VTDRQTFIMRKFNRELGISIEERAL 370
>gi|307702062|ref|ZP_07639069.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
gi|307616549|gb|EFN95739.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
Length = 521
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|357236526|ref|ZP_09123869.1| hypothetical protein STRCR_2065 [Streptococcus criceti HS-6]
gi|356884508|gb|EHI74708.1| hypothetical protein STRCR_2065 [Streptococcus criceti HS-6]
Length = 519
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 116/246 (47%), Gaps = 37/246 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL +V+ L++DE D + N + L+ + A S N RQT+ SA+
Sbjct: 128 GRLLDLIKRRALKLNTVETLILDEADEMLN----MGFLEDIEAIISHVPNERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K D HV + A + + +V ++ K+ T+ LI
Sbjct: 184 MP-------DAIKRIGVKFMKDPEHVKIAAKELTSDMVEQFYVRVKEREKFDTMTRLIDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS-----YKGSSDVLLLEEEMNFNSR 173
+ PE I+F T VD L+ Y+ + +++ N R
Sbjct: 237 EQPELSIVF--------------GRTKRRVDELTRGLKLRGYRAEG----IHGDLDQNKR 278
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ + + +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S +
Sbjct: 279 LRVIRDFKNDNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYIHRIGRTGRAGKSGQ 338
Query: 234 KWTVTS 239
T S
Sbjct: 339 SITFVS 344
>gi|170760570|ref|YP_001788120.1| DEAD/DEAH box helicase [Clostridium botulinum A3 str. Loch Maree]
gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A3 str. Loch Maree]
Length = 524
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 27/254 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL + L++DE D + N + ++ ++ S + +QT+ SA++
Sbjct: 133 GRILDHINRRTLKLGGIDFLILDEADEMLNMG-FIEDIETIMES--TPEEKQTMLFSATM 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHV-NAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P + L + K DV H+ + + H F + K K + + +I S+
Sbjct: 190 PAAIKKL----ALNYMKEDVEHIAILKKSLTVDKIAQHYFAVKNKD-KLEAICRIIDSEE 244
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLE 179
PES IIF ++K+ VD L + + +V + +M+ N R +L +
Sbjct: 245 PESAIIFC-----RTKRG---------VDELVEAMQSKGYNVEGMHGDMSQNQRINTLKK 290
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++ LV+TD+AARGID+ +H+ N+D+P+ A Y+HR GRTGR +D++ T S
Sbjct: 291 FKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGR---ADKEGTAYS 347
Query: 240 IITSEELFVLQRYE 253
++T E+ +++ E
Sbjct: 348 LVTPREVSSIRQIE 361
>gi|154248677|ref|YP_001419635.1| DEAD/DEAH box helicase [Xanthobacter autotrophicus Py2]
gi|154162762|gb|ABS69978.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
Py2]
Length = 537
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 128/256 (50%), Gaps = 30/256 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L +E+ L ++VLVIDE D + + + + KL+ RQT+F SA
Sbjct: 131 GRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERVCKLVPF-----TRQTLFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTLLSLIQ 117
++P + + Q S+ V V V+ + + H V G++ K + L LI+
Sbjct: 186 TMPPE---IQRLVSQFL--SNPVRVEVSKPASTAATVTHMLVASGREDYDKREVLRELIR 240
Query: 118 S-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRAA 175
+ D ++GIIF + + V L S K + + L +M+ ++R
Sbjct: 241 NCDGLQNGIIFCNRKRD--------------VAVLHRSLQKHGFNAVALHGDMDQHARIK 286
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+L + R G LLV++D+AARG+D+P +H++N+D+P + DY+HR GRTGR + +
Sbjct: 287 ALDQFRSGEATLLVASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRVGRTGRAGRAGTAY 346
Query: 236 TVTSIITSEELFVLQR 251
T+ + ++ + +++
Sbjct: 347 TLVTHTDAKSVTAIEK 362
>gi|411118915|ref|ZP_11391295.1| DNA/RNA helicase, superfamily II [Oscillatoriales cyanobacterium
JSC-12]
gi|410710778|gb|EKQ68285.1| DNA/RNA helicase, superfamily II [Oscillatoriales cyanobacterium
JSC-12]
Length = 505
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 134/270 (49%), Gaps = 27/270 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+ + KL+ V LV+DE D + N + ++K+L + RQT F SA++
Sbjct: 130 GRVLDLLNRGDLKLDQVNWLVLDEADEMLNMGF-IQDVEKIL--NQAPTERQTAFFSATM 186
Query: 62 -PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHH-RFVICGKKMKYQTLLSLIQSD 119
P R+ + K+ +S V + + K P+ ++ +++ K + LL +++ +
Sbjct: 187 DPSIRKLV-----TKFLRSPVT-ITIEQPKAAPTRINQVAYLVPRGWTKARALLPILELE 240
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PES IIFV K A S + Y G +++ R LL
Sbjct: 241 DPESAIIFV----RTRKSAAELTSQLQAAGHSVDEYHG---------DLSQTQRERLLLR 287
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
RQ +V+TDIAARGI + + TH+ N+DLP S +Y+HR GRTGR + ++ T S
Sbjct: 288 FRQRQVRWVVATDIAARGIHVDDLTHVINYDLPDSVENYVHRIGRTGR---AGKEGTAIS 344
Query: 240 IITSEELFVLQRYENELKFKSEELTLQTQC 269
II S + L+ EN ++ + E +++ T+
Sbjct: 345 IIHSLDRRKLKDIENHIRQRLEIVSIPTRA 374
>gi|419781258|ref|ZP_14307090.1| DEAD/DEAH box helicase [Streptococcus oralis SK100]
gi|383184650|gb|EIC77164.1| DEAD/DEAH box helicase [Streptococcus oralis SK100]
Length = 525
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|322391693|ref|ZP_08065161.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
gi|321145504|gb|EFX40897.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
Length = 523
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ V+ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQHVETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPKHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|418966957|ref|ZP_13518660.1| DEAD/DEAH box helicase [Streptococcus mitis SK616]
gi|383346061|gb|EID24135.1| DEAD/DEAH box helicase [Streptococcus mitis SK616]
Length = 523
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|116628255|ref|YP_820874.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9]
gi|116101532|gb|ABJ66678.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus
LMD-9]
Length = 527
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 29/242 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL +++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNNIETLILDEADEMLN----MGFLEDIEAIISRVPEKRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + F+ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASL 177
D PE I+F T VD L+ K S + +++ N R +
Sbjct: 237 DQPELSIVF--------------GRTKRRVDELTRGLKLRGSRAEGIHGDLDQNKRLRII 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITF 342
Query: 238 TS 239
S
Sbjct: 343 VS 344
>gi|424780375|ref|ZP_18207249.1| Cold-shock DEAD-box protein A [Catellicoccus marimammalium
M35/04/3]
gi|422843078|gb|EKU27524.1| Cold-shock DEAD-box protein A [Catellicoccus marimammalium
M35/04/3]
Length = 494
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 121/260 (46%), Gaps = 38/260 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I++ KL V+VLV+DE D + N + S+ K S N+RQT+ SA
Sbjct: 128 GRLLDHIQRGTLKLNHVKVLVLDEADEMLNMGFLDDIESIIK-----SVPNDRQTLLFSA 182
Query: 60 SIPQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLS 114
++P+ + F+ N HV + A + S + F+ + K+ L
Sbjct: 183 TMPEDIKRIGVQFMKNP----------EHVQIKAKEMTASLIDQYFMRVKEFEKFDILTR 232
Query: 115 LIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
L+ PE IIF ++K+ + S L S YK + +++ R
Sbjct: 233 LLDVHTPELSIIF-----GRTKRRVDELSRALE----SRGYKAEG----IHGDLSQQKRM 279
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEK 234
L ++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +
Sbjct: 280 DVLKAFKKGELDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKD 336
Query: 235 WTVTSIITSEELFVLQRYEN 254
+ +T E+ LQ E
Sbjct: 337 GMSVTFVTPNEMSYLQTIEK 356
>gi|406588887|ref|ZP_11063373.1| ATP-dependent RNA helicase [Streptococcus sp. GMD1S]
gi|419814746|ref|ZP_14339501.1| ATP-dependent RNA helicase [Streptococcus sp. GMD2S]
gi|419817514|ref|ZP_14341672.1| ATP-dependent RNA helicase [Streptococcus sp. GMD4S]
gi|404465849|gb|EKA11235.1| ATP-dependent RNA helicase [Streptococcus sp. GMD4S]
gi|404466056|gb|EKA11416.1| ATP-dependent RNA helicase [Streptococcus sp. GMD1S]
gi|404471161|gb|EKA15716.1| ATP-dependent RNA helicase [Streptococcus sp. GMD2S]
Length = 525
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 116/230 (50%), Gaps = 29/230 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 332
>gi|440784135|ref|ZP_20961556.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
pasteurianum DSM 525]
gi|440219171|gb|ELP58386.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
pasteurianum DSM 525]
Length = 379
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 29/263 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +++ +VIDE D L + + +S +K ++ + + +RQ + SASI
Sbjct: 131 GRIFELIKKKKISSHTIKTIVIDECDKLLDKN-NISKVKDIIKT--TLRDRQLMAFSASI 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ N + ++ + L + + H + + ++ K++ L +I ++ P
Sbjct: 188 NEETI---NSASSLMKEPSIIKIEDEI---LNTNVEHMYFLSDQREKFELLRKIIAAEEP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS--YKGSSDVLLLEEEMNFNSRAASLLE 179
+ +IF+ + E ++F+ + Y S L R +L
Sbjct: 242 KKSLIFINKPVE--------------IEFIVSKLQYHHISSYALYGNAKK-EERKKALNN 286
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R G LV++DIAARG+D+ + THI+N DLP +YLHR GRTGR ++ S
Sbjct: 287 FRAGKIQFLVASDIAARGLDVKDITHIFNLDLPEDPKEYLHRVGRTGR---MNKSGITIS 343
Query: 240 IITSEELFVLQRYENELKFKSEE 262
IIT +L +++Y N+L K +E
Sbjct: 344 IITKRDLPTIKKYMNKLNLKIKE 366
>gi|418977410|ref|ZP_13525229.1| DEAD/DEAH box helicase [Streptococcus mitis SK575]
gi|383349927|gb|EID27841.1| DEAD/DEAH box helicase [Streptococcus mitis SK575]
Length = 524
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 122/256 (47%), Gaps = 30/256 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ PE I+F ++ + F + G +++ N R L
Sbjct: 237 EQPELAIVF----GRTKRRVDELIRGLKIRGFRAEGIHG---------DLDQNKRLRVLR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 284 DFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT-- 341
Query: 239 SIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 -FVSPNEMGYLQIIEN 356
>gi|268318337|ref|YP_003292056.1| DEAD/DEAH box helicase [Rhodothermus marinus DSM 4252]
gi|262335871|gb|ACY49668.1| DEAD/DEAH box helicase domain protein [Rhodothermus marinus DSM
4252]
Length = 505
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 119/246 (48%), Gaps = 27/246 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + LIE+ +L ++QVLV DE D + + + LK+ L R T SA
Sbjct: 169 GRILDLIERGALRLGALQVLVFDEADEMLSMGFYPAMRQLKRYL-----PRERNTAMFSA 223
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + +++ K D V ++ + + HR+ I K + L+ LI+ +
Sbjct: 224 TMPPR----VQALAREFLK-DPAFVSLSTDRIAAETIEHRYFIVPPMEKDRALVQLIELE 278
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PES IIF + + L FL N Y ++D + ++ R +
Sbjct: 279 NPESAIIFANTKRD----------VEYLGQFLKN-YGYNADAIT--GDLPQKQRERIMDR 325
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+R+G LLV+TD+AARGID+ + +H++ +D+P+ Y+HR+GRTGR E T+
Sbjct: 326 LRKGQLRLLVATDVAARGIDISDLSHVFMYDVPQDPEYYVHRSGRTGR--VGKEGTTIVL 383
Query: 240 IITSEE 245
+ EE
Sbjct: 384 VTPLEE 389
>gi|406577293|ref|ZP_11052907.1| ATP-dependent RNA helicase [Streptococcus sp. GMD6S]
gi|404460138|gb|EKA06419.1| ATP-dependent RNA helicase [Streptococcus sp. GMD6S]
Length = 525
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLKDIETLILDEADEMLN----MGFLEDIEAIISRVPESRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRTEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|423068160|ref|ZP_17056948.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0395]
gi|355367051|gb|EHG14764.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0395]
Length = 514
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 120/255 (47%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL V+ L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHVETLILDEADEMLN----MGFLEDIEAIISRVPEDRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + CI K+ K + HV + A + + ++ + K+ T+ L+ +
Sbjct: 184 MPDAIK----CIGVKFMK-EPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLE 179
PE I+F T VD L+ K + +++ R L +
Sbjct: 239 PELSIVF--------------GRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|221502154|gb|EEE27898.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
Length = 479
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 13 FKLESVQVLVIDEVDFL----FNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFL 68
F L+SV+VLV+DE D L F+++ QV LL S RQT+ SA++ L
Sbjct: 190 FSLKSVKVLVLDEADRLLSLDFDAALQV-----LLEHVGSPAERQTMLFSATMTTKVSKL 244
Query: 69 HNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFV 128
QK + V + VN+ + S L F++ K+K+ L + + +P S I+F
Sbjct: 245 -----QKASLKKPVKLEVNSKYDVASHLQQHFLLVPFKLKHTHLAAALLHLSPSSVIVF- 298
Query: 129 GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLL 188
+ NA T L + L G V L +M R +L + R L
Sbjct: 299 ------TNTCANARKTALFLRHL-----GFQSVCL-HGKMTQPQRIGALTKFRAAETSCL 346
Query: 189 VSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFV 248
V+T++ +RG+D+P + NFD+P S+ +Y+HR GRT R + T I+T ++
Sbjct: 347 VATEVGSRGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALT---IVTQYDVEA 403
Query: 249 LQRYENELKFKSEELT 264
QR E+ L K EELT
Sbjct: 404 YQRIEHALGQKLEELT 419
>gi|237845351|ref|XP_002371973.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|61676032|gb|AAX51681.1| DEAD box RNA helicase [Toxoplasma gondii]
gi|211969637|gb|EEB04833.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
Length = 479
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 13 FKLESVQVLVIDEVDFL----FNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFL 68
F L+SV+VLV+DE D L F+++ QV LL S RQT+ SA++ L
Sbjct: 190 FSLKSVKVLVLDEADRLLSLDFDAALQV-----LLEHVGSPAERQTMLFSATMTTKVSKL 244
Query: 69 HNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFV 128
QK + V + VN+ + S L F++ K+K+ L + + +P S I+F
Sbjct: 245 -----QKASLKKPVKLEVNSKYDVASHLQQHFLLVPFKLKHTHLAAALLHLSPSSVIVF- 298
Query: 129 GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLL 188
+ NA T L + L G V L +M R +L + R L
Sbjct: 299 ------TNTCANARKTALFLRHL-----GFQSVCL-HGKMTQPQRIGALTKFRAAETSCL 346
Query: 189 VSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFV 248
V+T++ +RG+D+P + NFD+P S+ +Y+HR GRT R + T I+T ++
Sbjct: 347 VATEVGSRGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALT---IVTQYDVEA 403
Query: 249 LQRYENELKFKSEELT 264
QR E+ L K EELT
Sbjct: 404 YQRIEHALGQKLEELT 419
>gi|393199138|ref|YP_006460980.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
StLB046]
gi|406666247|ref|ZP_11074015.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus isronensis
B3W22]
gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
StLB046]
gi|405385786|gb|EKB45217.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus isronensis
B3W22]
Length = 517
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 125/257 (48%), Gaps = 26/257 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L+ VQ LV+DE D + N + + +L + S +RQT+ SA++
Sbjct: 129 GRIQDHINRRTLRLDEVQTLVLDEADEMLNMGF-IDDINAILENVPS--DRQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R I + + K D V + A + + FV ++ K+ L L+ S P
Sbjct: 186 PPAIR----KIAETFMK-DPEIVKIKAKELTMENIEQFFVKATEREKFDALSRLLDSQKP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
E IIF ++K+ + S L L FL+ G +++ R + L +
Sbjct: 241 ELAIIF-----GRTKRRVDELSQALGLRGFLAEGIHG---------DLSQAKRISVLRQF 286
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G +L++TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + +
Sbjct: 287 KEGKIDILIATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKSGVAVTF 343
Query: 241 ITSEELFVLQRYENELK 257
+T E+ L+ E K
Sbjct: 344 VTPREMGYLRIVEETTK 360
>gi|294055756|ref|YP_003549414.1| DEAD/DEAH box helicase [Coraliomargarita akajimensis DSM 45221]
gi|293615089|gb|ADE55244.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
DSM 45221]
Length = 406
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 130/257 (50%), Gaps = 24/257 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ L +V +L++DEVD + + + +KK++ + S RQT+ SA++
Sbjct: 131 GRLIDHVQQRTADLRNVDLLILDEVDRMLDMGF-IDDVKKII-KFCSKQGRQTLLFSATV 188
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPS-CLHHRFVICGKKMKYQTLLSLIQSD 119
+ +R + ++ D V V + A+K P+ + H G K+ L++LI+S
Sbjct: 189 SEEIKRLIARSLK------DPVEVAI-AVKITPAETVKHEVYPVGAMQKFDLLVALIESM 241
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
+S IIF K G T L + YK V + ++N +R +L +
Sbjct: 242 EVDSMIIFC------RMKIGADRITRWL---QQHKYK----VAAMHADLNQKARNRALQD 288
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TDIA+RG+D+ TH+ N+D+P DY+HR GRTGR + T+ +
Sbjct: 289 FKDGNIKILVATDIASRGLDIANVTHVINYDVPEHPEDYVHRIGRTGRAQREGDAATILA 348
Query: 240 IITSEELFVLQRYENEL 256
+L ++++ ++L
Sbjct: 349 PDEESKLDAIEKFIDQL 365
>gi|110634124|ref|YP_674332.1| DEAD/DEAH box helicase [Chelativorans sp. BNC1]
gi|110285108|gb|ABG63167.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
Length = 477
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 121/249 (48%), Gaps = 39/249 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 131 GRLLDHHERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 185
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTL 112
++P +FL ++ + +K V++ R V G K K + L
Sbjct: 186 TMPPEITKLTEQFLQGPVRVEVSKPASTAVNIT----------QRLVKSGSKPWAKREKL 235
Query: 113 LSLIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LI+++ E + IIF ++E + TL + + + D L +M+
Sbjct: 236 RDLIRAEGDELKNAIIFCNRKTEVA---------TLFRSLVRHEF----DAGALHGDMDQ 282
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R L R+G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR
Sbjct: 283 RARMMMLENFRKGKLKLLVASDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGR 342
Query: 231 SDEKWTVTS 239
S + +T+ +
Sbjct: 343 SGKAFTIVT 351
>gi|83858471|ref|ZP_00951993.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
gi|83853294|gb|EAP91146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
Length = 480
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 127/271 (46%), Gaps = 27/271 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KLL RQT+F SA
Sbjct: 131 GRLLDHFERGGLLLTGVEILVIDEADRMLDMGFIPDIERILKLLPP-----RRQTLFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + L + + + +V A L R + K + L + I D
Sbjct: 186 TMPGEIKHLVDTFLRDPERVEVTRPAQTADTITQFIL--RVSDNQARTKREALRAAINRD 243
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLL 178
++GIIF + + VD ++ S + + +++ + R +L
Sbjct: 244 GVKNGIIFCNRKRD--------------VDIVARSLQRHGFSAAPIHGDLDQSQRTKTLA 289
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
E + G LLV++D+AARG+D+P +H++N D+PR+A DY+HR GRTGR + +K
Sbjct: 290 EFKSGELRLLVASDVAARGLDIPAVSHVFNVDIPRNADDYVHRIGRTGR---AGQKGEAV 346
Query: 239 SIITSEELFVLQRYENELKFKSEELTLQTQC 269
++++SE+ L + + + EL L +
Sbjct: 347 TLVSSEDNKALAKVVKLIGKEPAELKLSGEA 377
>gi|187934350|ref|YP_001885537.1| ATP-dependent RNA helicase [Clostridium botulinum B str. Eklund
17B]
gi|187722503|gb|ACD23724.1| ATP-dependent RNA helicase [Clostridium botulinum B str. Eklund
17B]
Length = 382
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 133/262 (50%), Gaps = 26/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI K +++ +VIDEVD L + K+ +K ++ + + +RQ + SASI
Sbjct: 133 GRVLDLIRKKKITAHTIKTIVIDEVDNLLDP-KRAQIVKDIIKT--TMRDRQLMAFSASI 189
Query: 62 -PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P+ L+ ++ D + V + + H +V C ++ K++ L +I ++
Sbjct: 190 TPEIVDSLNELMK------DPLIVKSQGKSSINPNISHVYVKCDRRDKFEVLRKIIAAED 243
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+ +IFV + + T+L +++ + S + EE R ++
Sbjct: 244 PKRALIFVNDNKD-------IELTSLKLNYHNRECFAMSGSISKEE------RKNAIDSF 290
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G +LVS+D++ARG+D+ + TH++N DLP +YLHR+GRT R + K T I
Sbjct: 291 KTGKIKILVSSDVSARGLDITDITHVFNLDLPLKLDEYLHRSGRTAR---GNAKGTSICI 347
Query: 241 ITSEELFVLQRYENELKFKSEE 262
+T +++ ++++YE + +E
Sbjct: 348 VTDKQMNIIKKYEKAFDVEFQE 369
>gi|407797235|ref|ZP_11144181.1| DEAD/DEAH box helicase [Salimicrobium sp. MJ3]
gi|407018429|gb|EKE31155.1| DEAD/DEAH box helicase [Salimicrobium sp. MJ3]
Length = 491
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 126/267 (47%), Gaps = 34/267 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + KLE V V+DE D + N + ++ +L + + RQT+ SA++
Sbjct: 128 GRLLDHIRRKTIKLEQVHTSVLDEADEMLNMG-FIEDIRDILKALPT--ERQTLLFSATM 184
Query: 62 PQHRR----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQ 117
P+ R L N ++ TKS + V S + +V +K K+ L L+
Sbjct: 185 PKEIRDIATTLMNTPKEVKTKSKEMTV---------SNIDQYYVEIAEKHKFDALTRLLD 235
Query: 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
AP+ I+F ++K+ + + L V F + G ++ R +
Sbjct: 236 IHAPDLAIVF-----GRTKRRVDEVADALQVRGFRAEGIHG---------DLTQGKRMSV 281
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + ++G +LV+TD+AARG+D+ + TH+YNFD+P+ Y+HR GRTGR + K
Sbjct: 282 LKKFKEGRIEILVATDVAARGLDISDVTHVYNFDIPQDPESYVHRIGRTGR---AGRKGE 338
Query: 237 VTSIITSEELFVLQRYENELKFKSEEL 263
S +T E L E K K E+L
Sbjct: 339 SISFVTPREKDQLNLIEKLTKKKIEKL 365
>gi|392393902|ref|YP_006430504.1| DNA/RNA helicase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390524980|gb|AFM00711.1| DNA/RNA helicase, superfamily II [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 398
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 123/262 (46%), Gaps = 34/262 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +S++ +V+DE D L + K + ++K +L + + + Q + SA++
Sbjct: 134 GRILELIQKRKISPQSLKTIVLDEADQLLDE-KNIQTVKAVLKT--TYKDSQILLFSATL 190
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
Q FL + Q+ T V +P+ H F +C ++ K + L L+
Sbjct: 191 SQETIERASGFLKDPEVQRVTMKAAV---------VPTITHQHF-MCEQRDKLELLRKLV 240
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ P +IFV + E K L + +S + R +
Sbjct: 241 RHLEPARALIFVNKTEEIEKTVERLKYHGLDAEAISGPSQK-------------ERRRKA 287
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ + R G LLV++D+AARG+D+ THI+N D+P YLHR GRTGR + +
Sbjct: 288 MEDFRTGKIPLLVASDLAARGLDIKNITHIFNLDIPEDPQLYLHRVGRTGR---AGQSGI 344
Query: 237 VTSIITSEELFVLQRYENELKF 258
S++T EL +L + EN LK
Sbjct: 345 AISLVTQRELPLLHKIENVLKI 366
>gi|374323237|ref|YP_005076366.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
gi|357202246|gb|AET60143.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
Length = 529
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 121/250 (48%), Gaps = 34/250 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + KLE V +V+DE D + + + + S+ K + + RQT+ SA
Sbjct: 129 GRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQV-----PDERQTMLFSA 183
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + + L + V+ V+A PL + ++ ++ K++ L LI +
Sbjct: 184 TMPPNIKRLAEQFLKNPEHVSVIPKQVSA--PL---IDQAYIEVPERQKFEALSRLIDME 238
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG---SSDVLLLEEEMNFNSRAAS 176
+PE I+F T VD L+ + + S+D L +++ N R A
Sbjct: 239 SPELAIVFG--------------RTKRRVDELAEALQKRGYSADGL--HGDLSQNQRDAV 282
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ + R G +LV+TD+AARG+D+ +H+ NFDLP+ Y+HR GRTGR E W
Sbjct: 283 MRKFRDGSIDVLVATDVAARGLDVSGVSHVVNFDLPQDPESYVHRIGRTGRAGKEGEAW- 341
Query: 237 VTSIITSEEL 246
S +T E+
Sbjct: 342 --SFVTPREI 349
>gi|339007892|ref|ZP_08640466.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|338775095|gb|EGP34624.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
Length = 506
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 128/264 (48%), Gaps = 36/264 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L+++Q LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 129 GRLIDHINRRTIRLQNIQTLVLDEADEMLNMGF-IEEIESILEQIP--DERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + + Q+ + + V + +P+ + ++ +K+K+ + L+ +P
Sbjct: 186 P---RQIESLAQRYLKNPEKITVKAKEVT-VPN-IEQVYMEVQEKLKFDVMTRLLDIQSP 240
Query: 122 ESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
E I+F V E SE K G + + G ++ R +
Sbjct: 241 ELAIVFGRTKRRVDELSEALNKRG----------YSAEGIHG---------DLTQAKRDS 281
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L + ++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +
Sbjct: 282 VLRQFKEGTIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKTG 338
Query: 236 TVTSIITSEELFVLQRYENELKFK 259
T+ +TS EL L+ E+ K K
Sbjct: 339 VATTFVTSRELDHLRMIEHVTKRK 362
>gi|417687029|ref|ZP_12336303.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41301]
gi|418160286|ref|ZP_12796985.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17227]
gi|332073919|gb|EGI84397.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41301]
gi|353822019|gb|EHE02195.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17227]
Length = 524
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 126/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL++++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQNIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TDIAARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDIAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|417677313|ref|ZP_12326720.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17545]
gi|418155567|ref|ZP_12792295.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16242]
gi|418157874|ref|ZP_12794590.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16833]
gi|418225966|ref|ZP_12852594.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP112]
gi|332072754|gb|EGI83235.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17545]
gi|353820426|gb|EHE00612.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16242]
gi|353824322|gb|EHE04496.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16833]
gi|353881163|gb|EHE60977.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP112]
Length = 524
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 AQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|220923247|ref|YP_002498549.1| DEAD/DEAH box helicase [Methylobacterium nodulans ORS 2060]
gi|219947854|gb|ACL58246.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
ORS 2060]
Length = 465
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 120/248 (48%), Gaps = 38/248 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKLVPF-----TRQTLFFSA 185
Query: 60 SIPQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTL 112
++P + FLHN V + V S + R V G + K +TL
Sbjct: 186 TMPPEIQRLADDFLHNP----------VRIEVARPASTASTIEQRLVATGGEGHQKRKTL 235
Query: 113 LSLIQ-SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFN 171
LI+ ++ ++GIIF + + ++ L L+N V L +M+
Sbjct: 236 RRLIRGAEELKNGIIFCNRKRDVAQ----------LQKSLANH---GFTVAALHGDMDQR 282
Query: 172 SRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS 231
+R A+L R G LLV++D+AARG+D+P +H++NFD+P A DY+HR GRTGR +
Sbjct: 283 ARMAALDAFRSGEIPLLVASDVAARGLDIPAVSHVFNFDVPHHAEDYVHRIGRTGRAGRN 342
Query: 232 DEKWTVTS 239
+T+ +
Sbjct: 343 GSAFTLVA 350
>gi|393768871|ref|ZP_10357402.1| DEAD/DEAH box helicase [Methylobacterium sp. GXF4]
gi|392725699|gb|EIZ83033.1| DEAD/DEAH box helicase [Methylobacterium sp. GXF4]
Length = 515
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 114/243 (46%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPF-----TRQTLFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P L + + +V A S + R V G K + L SLI+
Sbjct: 186 TMPPEIERLADMFLHNPQRIEVARPASTA-----STITQRLVAVGSDGHAKRERLRSLIR 240
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+A +GIIF + + + L +S+ + D L +M+ +R +
Sbjct: 241 GEAELNNGIIFCNRKRDVA---------LLQKSLVSHGF----DAAALHGDMDQRARTTA 287
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P +H++NFD+P DY+HR GRTGR S +T
Sbjct: 288 LDAFRNGETALLVASDVAARGLDIPAVSHVFNFDIPHHPEDYVHRIGRTGRAGRSGTAYT 347
Query: 237 VTS 239
+ +
Sbjct: 348 LVA 350
>gi|417938107|ref|ZP_12581405.1| DEAD/DEAH box helicase [Streptococcus infantis SK970]
gi|343391197|gb|EGV03772.1| DEAD/DEAH box helicase [Streptococcus infantis SK970]
Length = 525
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 126/256 (49%), Gaps = 30/256 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI++ KL ++ L++DE D + N + ++ +++ NRQT+ SA++
Sbjct: 128 GRLLDLIKRKALKLHDIETLILDEADEMLNMG-FLEDIEDIISRVPE--NRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
P + I++ + + HV + A + + ++ ++ K+ T+ L+ D
Sbjct: 185 P-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVD 237
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 238 QPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 284 DFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT-- 341
Query: 239 SIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 -FVSPNEMGYLQIIEN 356
>gi|332028589|gb|EGI68626.1| Putative ATP-dependent RNA helicase DDX43 [Acromyrmex echinatior]
Length = 660
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L++ ++ + +V L++DE D + + + K LL NRQTV SA+
Sbjct: 383 GRLNDLVQANVLDVSAVTYLILDEADRMLDMGFEPQIRKTLLGVRP---NRQTVMTSATW 439
Query: 62 PQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
PQ R ++ N IQ D+ VH + R + + K +
Sbjct: 440 PQGVRRLAQSYMKNPIQVFVGSLDLAAVH---------SVTQRIYMANEDEKTDMMHQFF 490
Query: 117 QSDAPESGII-FVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
Q P+ +I F G++S K + S L + S G D + R
Sbjct: 491 QEMGPQDKVIVFFGKKS----KVDDVSSDLALTNIDCQSIHGDRDQ---------SDREQ 537
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L +++ G +L++TD+A+RGID+ + TH+ N+D PR +Y+HR GRTGR
Sbjct: 538 ALEDLKTGAVQILLATDVASRGIDIEDITHVLNYDFPRDIEEYVHRVGRTGR 589
>gi|319947383|ref|ZP_08021615.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
700641]
gi|417918982|ref|ZP_12562526.1| DEAD/DEAH box helicase [Streptococcus australis ATCC 700641]
gi|319746323|gb|EFV98584.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
700641]
gi|342835133|gb|EGU69390.1| DEAD/DEAH box helicase [Streptococcus australis ATCC 700641]
Length = 524
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 126/256 (49%), Gaps = 30/256 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI++ KL ++ L++DE D + N + ++ +++ NRQT+ SA++
Sbjct: 128 GRLLDLIKRKALKLHDIETLILDEADEMLNMG-FLEDIEDIISRVPE--NRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
P + I++ + + HV + A + + ++ ++ K+ T+ L+ D
Sbjct: 185 P-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVD 237
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 238 QPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 284 DFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT-- 341
Query: 239 SIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 -FVSPNEMGYLQIIEN 356
>gi|449019165|dbj|BAM82567.1| similar to RNA helicase with DEAD motif [Cyanidioschyzon merolae
strain 10D]
Length = 614
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 131/310 (42%), Gaps = 60/310 (19%)
Query: 7 LIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC---NNRQTVFASASIPQ 63
L + +L SV++ VIDEVD +SL LL Y R TVF SA+IPQ
Sbjct: 316 LARSNKLRLHSVRMAVIDEVDVSVGEPAYRASLHALLNVYCMSRIEGRRTTVFVSATIPQ 375
Query: 64 HRRFLHNCIQQKWTKSDV------------------VH---VHVNA-------------- 88
+R F+ QQ W D+ VH + NA
Sbjct: 376 YRHFMDYARQQGWMDGDIKILATKSSPMDAAPQVQAVHAATLRANAEETPASPNGLELAL 435
Query: 89 -------IKPLPSCLHHRFVICGK-KMKYQTLLSLIQSDAPE--SGIIFVGEQSEKSKKA 138
+ LP + H +VIC + + K + L L++ + P IIF E + A
Sbjct: 436 QRTNAPGVAQLPERIEHFYVICTESRKKLKALAFLLERERPSLTQVIIFCSESRNLDQIA 495
Query: 139 GNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGI 198
L + S+V +L + R +L R G L STD+A+RG+
Sbjct: 496 NYIHVQGLFTE---------SEVAVLSTALPLRRRRLALERFRCGEVRALFSTDLASRGL 546
Query: 199 DLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYENELKF 258
D+PET+H+ NFDLP +A Y HR GRTG + SII E FVLQRY N +
Sbjct: 547 DIPETSHVINFDLPETAEQYAHRVGRTG---RLGRRGRAISIIVPGERFVLQRYSNRFRI 603
Query: 259 KSEELTLQTQ 268
+ T +Q
Sbjct: 604 DFTDWTQTSQ 613
>gi|317470864|ref|ZP_07930245.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
gi|316901691|gb|EFV23624.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
Length = 478
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 119/257 (46%), Gaps = 28/257 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL +VQ LVIDE D + + + +K++L S + R ++F++
Sbjct: 130 GRVMDHIRRETLKLSNVQWLVIDEADLMLDMGF-IDEVKQIL-SLVPADCRISLFSATLK 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R I + V V A + S + + ++ KY T L ++ + P
Sbjct: 188 PEIRELADGFI------PEAVLVMQEAGEEQASAITEKLYFASQERKYDTFLDILMDENP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS--YKGSSDVLLLEEEMNFNSRAASLLE 179
+S +IF G + T +L L + G +L +M R ++
Sbjct: 242 QSCMIFCGTRE----------MTNVLFQKLRRKRIFCG-----MLHGDMEQRERLKTVDA 286
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R+GG L++TD+AARGID E +H+ N+D P Y+HR GRTGR S T S
Sbjct: 287 FRRGGFRFLIATDVAARGIDFEEISHVVNYDFPTGKETYVHRIGRTGRNGNSG---TAVS 343
Query: 240 IITSEELFVLQRYENEL 256
++T + +L++ E L
Sbjct: 344 LVTENDQRMLKQVETYL 360
>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
Length = 533
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 126/258 (48%), Gaps = 37/258 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + +L+ VQ +V+DE D + + + + S+ KL+ RQT+ SA
Sbjct: 129 GRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVP-----EERQTLLFSA 183
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + + L + ++ V+ HV+A PL + ++ ++ K++ L L+ +
Sbjct: 184 TMPANIQKLASQFLKEPEHVSVIPKHVSA--PL---IDQAYIEVPERQKFEALSRLLDME 238
Query: 120 APESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
+PE I+F V E +E +K G + ++ G +++ + R
Sbjct: 239 SPELAIVFGRTKRRVDELAEALQKRG----------YSADGLHG---------DLSQHQR 279
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ + R G +LV+TD+AARG+D+ TH+ NFDLP+ Y+HR GRTGR
Sbjct: 280 DTVMRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGT 339
Query: 234 KWTVTSIITSEELFVLQR 251
W+ + + L+ ++R
Sbjct: 340 AWSFVTPREMDHLYFIER 357
>gi|188590398|ref|YP_001920680.1| ATP-dependent RNA helicase [Clostridium botulinum E3 str. Alaska
E43]
gi|188500679|gb|ACD53815.1| ATP-dependent RNA helicase [Clostridium botulinum E3 str. Alaska
E43]
Length = 382
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 132/262 (50%), Gaps = 26/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI K +++ +VIDEVD L + K+ +K ++ + + +RQ + SASI
Sbjct: 133 GRVLDLIRKKKITAHTIKTIVIDEVDNLLDP-KRAQIVKDIIKT--TMRDRQLMAFSASI 189
Query: 62 -PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P+ L ++ D + V + + H +V C ++ K++ L +I ++
Sbjct: 190 TPEIVDSLKELMK------DPLIVKSQGKSSINPNISHVYVKCDRRDKFEVLRKIIAAED 243
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+ +IFV + + T+L +++ + S + EE R ++
Sbjct: 244 PKRALIFVNDNKD-------IELTSLKLNYHNRECFAMSGSISKEE------RKNAIDSF 290
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G +LVS+D++ARG+D+ + TH++N DLP +YLHR+GRT R + K T I
Sbjct: 291 KTGKIKILVSSDVSARGLDITDITHVFNLDLPLKLDEYLHRSGRTAR---GNAKGTSICI 347
Query: 241 ITSEELFVLQRYENELKFKSEE 262
+T +++ ++++YE + +E
Sbjct: 348 VTDKQMNIIKKYEKAFDVEFQE 369
>gi|148984940|ref|ZP_01818193.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP3-BS71]
gi|307127794|ref|YP_003879825.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
gi|387757824|ref|YP_006064803.1| DEAD/DEAH box helicase [Streptococcus pneumoniae OXC141]
gi|418133033|ref|ZP_12769904.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
gi|418232585|ref|ZP_12859172.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|418237043|ref|ZP_12863610.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|419467196|ref|ZP_14007077.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|419480433|ref|ZP_14020238.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|419500133|ref|ZP_14039827.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|419512979|ref|ZP_14052611.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|419517184|ref|ZP_14056800.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|421283724|ref|ZP_15734510.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04216]
gi|421299049|ref|ZP_15749736.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60080]
gi|147922962|gb|EDK74078.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP3-BS71]
gi|301800413|emb|CBW33045.1| DEAD box helicase family protein [Streptococcus pneumoniae OXC141]
gi|306484856|gb|ADM91725.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
gi|353804916|gb|EHD85194.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
gi|353887312|gb|EHE67092.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|353892004|gb|EHE71754.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|379542943|gb|EHZ08095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|379570387|gb|EHZ35351.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|379599441|gb|EHZ64224.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|379634144|gb|EHZ98709.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|379639257|gb|EIA03801.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|395880410|gb|EJG91462.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04216]
gi|395900520|gb|EJH11458.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60080]
gi|429316448|emb|CCP36148.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN034156]
gi|429321608|emb|CCP35074.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN994039]
gi|429323428|emb|CCP31115.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN994038]
Length = 524
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 126/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 FVSPNEMGYLQIIEN 356
>gi|118579192|ref|YP_900442.1| DEAD/DEAH box helicase [Pelobacter propionicus DSM 2379]
gi|118501902|gb|ABK98384.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
2379]
Length = 447
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 134/274 (48%), Gaps = 45/274 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + L ++VLV+DE D +F+ + ++++L + RQT+ SA++
Sbjct: 129 GRLLDHINQGTIDLSRIEVLVLDEADQMFDMGF-LPDIRRVLKHLPA--QRQTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + ++Q T V + P P + H + +K LL L++
Sbjct: 186 PDDIRRLASDILRQPIT------VQAGSTAP-PVTVSHALYPVSQHLKTPLLLELLRHTD 238
Query: 121 PESGIIF---------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFN 171
ES +IF +GEQ EK+ Y+ +S L+ ++ N
Sbjct: 239 TESVLIFARTKHRAKRLGEQLEKA------------------GYRATS----LQGNLSQN 276
Query: 172 SRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS 231
R A+L R G ++V+TDIAARGID+ + +H+ N+D+P +A Y+HR GRTGR S
Sbjct: 277 RRQAALDGFRDGTFQIMVATDIAARGIDVSQISHVVNYDIPDTAEAYIHRIGRTGRAARS 336
Query: 232 DEKWTVTSIITSEELFVLQRYENELKFKSEELTL 265
+ +T ++T ++ +++ E +L + E T+
Sbjct: 337 GDAFT---LVTPDDNAMVRTIEKKLNAELERRTV 367
>gi|429319791|emb|CCP33100.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN034183]
Length = 524
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 126/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVTTDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 FVSPNEMGYLQIIEN 356
>gi|115524965|ref|YP_781876.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris BisA53]
gi|115518912|gb|ABJ06896.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
BisA53]
Length = 517
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 118/238 (49%), Gaps = 42/238 (17%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL+ RQT+F +A
Sbjct: 131 GRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPF-----TRQTLFFTA 185
Query: 60 SIPQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTL 112
++P R FLHN ++ + +K V V + V G++ K +TL
Sbjct: 186 TMPTEIRRITEAFLHNPVKIEVSKPASTAVTVTQSQ----------VAAGREPHQKRETL 235
Query: 113 LSLIQ--SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMN 169
L++ SD ++ IIF + E V L+ S K V L +M+
Sbjct: 236 RQLLREASDL-QNAIIFCNRKRE--------------VALLAKSLLKHGFSVGALHGDMD 280
Query: 170 FNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++R A+L R+G LLV++D+AARG+D+PE +H++NFD+P DY+HR GRTGR
Sbjct: 281 QSARTAALEAFRKGELPLLVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGR 338
>gi|418202809|ref|ZP_12839238.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52306]
gi|353867366|gb|EHE47261.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52306]
Length = 517
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 126/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL++++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 121 GRLLDLIKRKALKLQNIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 176
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 177 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 231
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 232 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 277
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 278 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 334
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 335 FVAPNEMGYLQIIEN 349
>gi|421307797|ref|ZP_15758439.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60132]
gi|395907182|gb|EJH18076.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60132]
Length = 524
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 126/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL++++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQNIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|195453762|ref|XP_002073931.1| GK14378 [Drosophila willistoni]
gi|194170016|gb|EDW84917.1| GK14378 [Drosophila willistoni]
Length = 683
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 122/245 (49%), Gaps = 23/245 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L++ + + ++ LV+DE D + + + ++K+L NRQT+ SA+
Sbjct: 394 GRLNDLVQAKVIDVSTITYLVLDEADRMLDMGFE-PQIRKILLDIPP--NRQTIMTSATW 450
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS-DA 120
P R L N + V + + A + + + K KY+T+ S I++
Sbjct: 451 PPGVRRLANSYMTNPIEVCVGSLDLAATHSVKQIVQ---FLEDDKEKYRTIKSFIKNMGE 507
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
+ IIF G ++ +A + S L F++ G+ D N R ++ ++
Sbjct: 508 SDKIIIFCGRKA----RADDLSSDLTLDGFMTQCIHGNRDQ---------NDREQAIADI 554
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G ++LV+TD+A+RG+D+ + +H+ N+D PR+ +Y+HR GRTGR + K T S
Sbjct: 555 KSGVVHILVATDVASRGLDIEDISHVINYDFPRNIEEYVHRVGRTGR---AGRKGTSISF 611
Query: 241 ITSEE 245
IT E+
Sbjct: 612 ITRED 616
>gi|251779418|ref|ZP_04822338.1| ATP-dependent RNA helicase [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083733|gb|EES49623.1| ATP-dependent RNA helicase [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 382
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 132/262 (50%), Gaps = 26/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI K +++ +VIDEVD L + K+ +K ++ + + +RQ + SASI
Sbjct: 133 GRVLDLIRKKKITAHTIKTIVIDEVDNLLDP-KRAQIVKDIIKT--TMRDRQLMAFSASI 189
Query: 62 -PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P+ L ++ D + V + + H +V C ++ K++ L +I ++
Sbjct: 190 TPEIVDSLKELMK------DPLIVKSQGKSSINPNISHVYVKCDRRDKFEVLRKIIAAED 243
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+ +IFV + + T+L +++ + S + EE R ++
Sbjct: 244 PKRALIFVNDNKD-------IELTSLKLNYHNRECFAMSGSISKEE------RKNAIDSF 290
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G +LVS+D++ARG+D+ + TH++N DLP +YLHR+GRT R + K T I
Sbjct: 291 KTGKIKILVSSDVSARGLDITDITHVFNLDLPLKLDEYLHRSGRTAR---GNAKGTSICI 347
Query: 241 ITSEELFVLQRYENELKFKSEE 262
+T +++ ++++YE + +E
Sbjct: 348 VTDKQMNIIKKYEKAFDVEFQE 369
>gi|295702421|ref|YP_003595496.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
gi|294800080|gb|ADF37146.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
Length = 503
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 127/268 (47%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L+ V +++DE D + N + ++K+L++ N QT+ SA++
Sbjct: 129 GRMLDHINRRTLRLQDVHTVILDEADEMLNMGF-IEDIEKILSNVPE--NHQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ + VV V + +P+ + ++ +K K+ L L+ +P
Sbjct: 186 PTP---IRRIAEKFMNEPKVVKVQAKEVT-MPNITQY-YLEVQEKRKFDILTRLLDMQSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS--YKGSSDVLLLEEEMNFNSRAASLLE 179
E IIF T VD LS + +G S + ++ + R + L +
Sbjct: 241 ELAIIF--------------GRTKRRVDELSEALNMRGYS-AQGIHGDLTQSKRLSVLRQ 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + +
Sbjct: 286 FKEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKMGAAMT 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L E K K E LT T
Sbjct: 343 FVTPRETGQLHNIERTTKRKMERLTPPT 370
>gi|384251062|gb|EIE24540.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 500
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 121/260 (46%), Gaps = 33/260 (12%)
Query: 18 VQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNR------QTVFASASIPQHRRFLHNC 71
++ L +DEVD K SL+ +L +C R Q V A++P L +
Sbjct: 230 LKALAVDEVDAYPKDQK--DSLEFVLGQ--ACAQRKQLPKPQVVLVGATLPPEH-VLDSY 284
Query: 72 IQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKY-----QTLLSLIQSD---APES 123
QQ W + D V + V + +P+ L HR+++ + K Q L L Q AP
Sbjct: 285 QQQGWVQ-DAVTLRVGRLGQVPAGLQHRYMVVDEPRKLILMCRQLRLDLAQQGEDTAPAR 343
Query: 124 GIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQG 183
++FVG SE++ +A P L L +K S VLL E + L R
Sbjct: 344 VMVFVG--SEEAARAAAMP----LRSGLWAEHKVS--VLLPHGEEPIQA----LHAFRDN 391
Query: 184 GGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITS 243
L++T AARG+DLP +H+YN D P ++ YLHRAGR GR S K VT+++T
Sbjct: 392 KASFLLATPSAARGLDLPAVSHVYNMDPPEDSVAYLHRAGRAGRI-GSPVKGIVTTLVTQ 450
Query: 244 EELFVLQRYENELKFKSEEL 263
E++ L EL EL
Sbjct: 451 EQVPELLAIAKELNLNLTEL 470
>gi|149012680|ref|ZP_01833656.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP19-BS75]
gi|168483538|ref|ZP_02708490.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1873-00]
gi|169832933|ref|YP_001694988.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
gi|194396853|ref|YP_002038215.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54]
gi|225857209|ref|YP_002738720.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
gi|225859340|ref|YP_002740850.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
gi|418087275|ref|ZP_12724444.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47033]
gi|418112928|ref|ZP_12749928.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41538]
gi|418121655|ref|ZP_12758598.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44194]
gi|418162615|ref|ZP_12799297.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17328]
gi|418176382|ref|ZP_12812973.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41437]
gi|418200618|ref|ZP_12837061.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47976]
gi|418219306|ref|ZP_12845971.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP127]
gi|418239122|ref|ZP_12865673.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419442942|ref|ZP_13982969.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13224]
gi|419455950|ref|ZP_13995907.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP04]
gi|419460394|ref|ZP_14000322.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02270]
gi|419462742|ref|ZP_14002645.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02714]
gi|419491499|ref|ZP_14031237.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47179]
gi|419523966|ref|ZP_14063541.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13723]
gi|419526295|ref|ZP_14065854.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14373]
gi|419532799|ref|ZP_14072314.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47794]
gi|421207032|ref|ZP_15664084.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2090008]
gi|421230207|ref|ZP_15686871.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061376]
gi|421236689|ref|ZP_15693286.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071004]
gi|421268751|ref|ZP_15719620.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR95]
gi|421275311|ref|ZP_15726140.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52612]
gi|421285836|ref|ZP_15736612.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60190]
gi|421292475|ref|ZP_15743209.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56348]
gi|421312409|ref|ZP_15763011.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58981]
gi|444409691|ref|ZP_21206276.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0076]
gi|444412727|ref|ZP_21209046.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0153]
gi|444415144|ref|ZP_21211388.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0199]
gi|444423615|ref|ZP_21219207.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0446]
gi|147763280|gb|EDK70218.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP19-BS75]
gi|168995435|gb|ACA36047.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
gi|172043152|gb|EDT51198.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1873-00]
gi|194356520|gb|ACF54968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae G54]
gi|225721382|gb|ACO17236.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
gi|225724473|gb|ACO20325.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
gi|353758291|gb|EHD38883.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47033]
gi|353783290|gb|EHD63719.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41538]
gi|353792491|gb|EHD72863.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44194]
gi|353827127|gb|EHE07281.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17328]
gi|353840453|gb|EHE20517.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41437]
gi|353864159|gb|EHE44077.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47976]
gi|353873666|gb|EHE53525.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP127]
gi|353892113|gb|EHE71862.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379530174|gb|EHY95414.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02714]
gi|379530530|gb|EHY95769.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02270]
gi|379551642|gb|EHZ16736.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13224]
gi|379556374|gb|EHZ21429.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13723]
gi|379557540|gb|EHZ22584.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14373]
gi|379592861|gb|EHZ57676.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47179]
gi|379605319|gb|EHZ70070.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47794]
gi|379627926|gb|EHZ92532.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP04]
gi|395574368|gb|EJG34946.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2090008]
gi|395593733|gb|EJG53975.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061376]
gi|395601452|gb|EJG61599.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071004]
gi|395869005|gb|EJG80121.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR95]
gi|395873275|gb|EJG84367.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52612]
gi|395885823|gb|EJG96844.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60190]
gi|395891782|gb|EJH02776.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56348]
gi|395909263|gb|EJH20139.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58981]
gi|444273966|gb|ELU79621.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0153]
gi|444278936|gb|ELU84355.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0076]
gi|444280573|gb|ELU85935.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0199]
gi|444286587|gb|ELU91558.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0446]
Length = 524
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 126/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL++++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQNIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|444398031|ref|ZP_21195514.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0006]
gi|444260688|gb|ELU66996.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0006]
Length = 501
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|306825666|ref|ZP_07459005.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304432027|gb|EFM35004.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 518
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S ++RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPDSRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|378826015|ref|YP_005188747.1| ATP-dependent RNA helicase [Sinorhizobium fredii HH103]
gi|365179067|emb|CCE95922.1| ATP-dependent RNA helicase [Sinorhizobium fredii HH103]
Length = 501
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKMKYQTLL-SLIQ 117
++P + L + Q + +V AI + RFV GK + + +L LI+
Sbjct: 187 TMPPEIQKLADRFLQNPERVEVARPASTAI-----TVTQRFVAAHGKDYEKRAVLRDLIR 241
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ IIF + + ++ F S G S V L +M+ SR A
Sbjct: 242 AQGELKNAIIFCNRKKDVAEL------------FRSLDRHGFS-VGALHGDMDQRSRMAM 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR S +T
Sbjct: 289 LANFKDGNIQLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFT 348
Query: 237 VTS 239
+ +
Sbjct: 349 IVT 351
>gi|419433872|ref|ZP_13973990.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40183]
gi|379576873|gb|EHZ41797.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40183]
Length = 511
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|415749990|ref|ZP_11477934.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV35]
gi|381318284|gb|EIC59009.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV35]
Length = 511
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|418134760|ref|ZP_12771617.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11426]
gi|353901997|gb|EHE77527.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11426]
Length = 430
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|317132017|ref|YP_004091331.1| DEAD/DEAH box helicase [Ethanoligenens harbinense YUAN-3]
gi|315469996|gb|ADU26600.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
YUAN-3]
Length = 530
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 121/253 (47%), Gaps = 25/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + V+ V+DE D + N + ++ +L + + RQ++ SA++
Sbjct: 131 GRILDHIRRGTVDFSHVRFFVLDESDEMLNMGF-IDDIQAVLDTLPA--ERQSLLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGK-KMKYQTLLSLIQSDA 120
P R L Q+ K DV ++ V A L + L +F K + +++TL ++ D
Sbjct: 188 PMQIRKL----AQQHMKPDVKNI-VIAKSTLTATLTEQFYFEVKHRDRFETLCRILDVDE 242
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PES IIF + + N S +V+ + +M N R +L +
Sbjct: 243 PESAIIFCRTKRGVDELVENMQSRGYIVEGMHG-------------DMGQNQRQNTLKKF 289
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R G LV+TD+AARGID+ +H+ N++LP A Y+HR GRTGR ++ S+
Sbjct: 290 RDGNLDFLVATDVAARGIDIENISHVINYELPEDAESYVHRIGRTGR---ANRTGIAYSL 346
Query: 241 ITSEELFVLQRYE 253
+T E +L++ E
Sbjct: 347 VTPREYIILKQIE 359
>gi|402817862|ref|ZP_10867448.1| putative ATP-dependent RNA helicase YfmL [Paenibacillus alvei DSM
29]
gi|402504374|gb|EJW14903.1| putative ATP-dependent RNA helicase YfmL [Paenibacillus alvei DSM
29]
Length = 430
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 124/257 (48%), Gaps = 24/257 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LIE K+ V+ +V+DEVD + + + S+ +RQ +F SA++
Sbjct: 131 GRIRELIEMRKLKMHEVRTIVVDEVDHVLQKGGAGDTDYIM---RSALRDRQLLFFSATL 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + + ++W + D V++ + K + + H +C ++ K L L++ P
Sbjct: 188 PEEVK----ALAERWMQ-DPVNIGIEPEKRIADTIEHLVFVCEERDKIDMLRRLVRHWNP 242
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I+F+ + +E + ++ V L + R L R
Sbjct: 243 KQAIVFINDSAE-------------IAEWEQKLSYAHLSVASLYGDAPKQERVNVLKRFR 289
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G LL++TD+AARG+D+P+ +++ +A Y+HRAGRTGR + ++I
Sbjct: 290 EGHFQLLLATDVAARGLDIPDLPFVFSAQPALNAEHYVHRAGRTGR---MGRQGVSVNLI 346
Query: 242 TSEELFVLQRYENELKF 258
+ E F+++++E EL+
Sbjct: 347 SPREQFIMKKFERELEI 363
>gi|227495476|ref|ZP_03925792.1| superfamily II helicase [Actinomyces coleocanis DSM 15436]
gi|226831023|gb|EEH63406.1| superfamily II helicase [Actinomyces coleocanis DSM 15436]
Length = 616
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 119/264 (45%), Gaps = 22/264 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LIEK KL +V VLV+DE D + ++ + AS R T SA++
Sbjct: 133 GRVIDLIEKGALKLNNVSVLVLDEADEMLRMGF-AEDVETIAASMPESGKRITALFSATM 191
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P F+ Q T D V + V +H + + K K L ++ +
Sbjct: 192 PD---FIQRVADQHLT--DPVRIEVARQSSTVENIHQTYAVVPFKHKLGALGRVLATRDE 246
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
++ I+FV + + + A VD + + ++ + +++ N R + +R
Sbjct: 247 DAAIVFVRTRVDADEVA---------VDMATRGFTAAA----ISGDVSQNERERIVSRLR 293
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ + NFD+PR Y+HR GRTGR + T
Sbjct: 294 DGSLDVLVATDVAARGLDVERIGLVINFDVPRETEAYVHRVGRTGRAGRAGRSLT---FF 350
Query: 242 TSEELFVLQRYENELKFKSEELTL 265
T +E F L++ E K EE+ +
Sbjct: 351 TPKEQFRLRQIEKLTGTKMEEIVI 374
>gi|419482639|ref|ZP_14022426.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40563]
gi|379579231|gb|EHZ44138.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40563]
Length = 517
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 121 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 176
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 177 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 231
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 232 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 277
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 278 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 334
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 335 FVAPNEMGYLQIIEN 349
>gi|149022054|ref|ZP_01836016.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP23-BS72]
gi|418103285|ref|ZP_12740357.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP070]
gi|419475927|ref|ZP_14015764.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14688]
gi|419487070|ref|ZP_14026832.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44128]
gi|421209364|ref|ZP_15666377.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070005]
gi|421225425|ref|ZP_15682163.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070768]
gi|147929898|gb|EDK80887.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP23-BS72]
gi|353774586|gb|EHD55073.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP070]
gi|379559023|gb|EHZ24054.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14688]
gi|379585439|gb|EHZ50295.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44128]
gi|395573460|gb|EJG34050.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070005]
gi|395588912|gb|EJG49234.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070768]
Length = 511
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|323490311|ref|ZP_08095526.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2]
gi|323395981|gb|EGA88812.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2]
Length = 481
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 125/263 (47%), Gaps = 34/263 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + IE+ KLE ++ LV+DE D + N +QV S+ L R T+ SA
Sbjct: 131 GRVLDHIERGTLKLEQIEYLVLDEADEMLNMGFVEQVESIINKLPK-----QRTTMLFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P++ L QK D H+ + + + L + H + ++ K+ L + +
Sbjct: 186 TLPENVEKL-----QKKYMIDPQHIEIASTETLTDQIDHSLFVVAEQKKFSLLRDVTIIE 240
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVL---LLEEEMNFNSRAAS 176
P+S IIF + + +++ L Y + D L +L+E+ R A
Sbjct: 241 NPDSCIIFCRTKD----------NVDFVMEQLEKHYY-TCDKLHGGMLQED-----RTAV 284
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ E ++G LV+TD+AARGID+ TH+ NFDLP Y+HR+GRTGR + +
Sbjct: 285 MNEFKRGEFRYLVATDVAARGIDIDSITHVINFDLPMEKESYVHRSGRTGR---AGKTGK 341
Query: 237 VTSIITSEELFVLQRYENELKFK 259
S +T E L E+ + F+
Sbjct: 342 AISFVTPNEDKFLAEIESYIGFE 364
>gi|415752805|ref|ZP_11479787.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV36]
gi|381308452|gb|EIC49295.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV36]
Length = 511
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|15901428|ref|NP_346032.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TIGR4]
gi|15903483|ref|NP_359033.1| ATP-dependent RNA helicase, [Streptococcus pneumoniae R6]
gi|111657434|ref|ZP_01408185.1| hypothetical protein SpneT_02001363 [Streptococcus pneumoniae
TIGR4]
gi|116516011|ref|YP_816872.1| ATP-dependent RNA helicase [Streptococcus pneumoniae D39]
gi|148988638|ref|ZP_01820071.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP6-BS73]
gi|148993389|ref|ZP_01822906.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP9-BS68]
gi|148997346|ref|ZP_01824951.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP11-BS70]
gi|149003176|ref|ZP_01828072.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS69]
gi|149007498|ref|ZP_01831133.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP18-BS74]
gi|168486852|ref|ZP_02711360.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1087-00]
gi|168488692|ref|ZP_02712891.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae SP195]
gi|168575216|ref|ZP_02721179.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae MLV-016]
gi|237650716|ref|ZP_04524968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
1974]
gi|237821935|ref|ZP_04597780.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
1974M2]
gi|303256042|ref|ZP_07342065.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS455]
gi|303260214|ref|ZP_07346186.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP-BS293]
gi|303262605|ref|ZP_07348546.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS292]
gi|303265007|ref|ZP_07350922.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS397]
gi|303266470|ref|ZP_07352358.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS457]
gi|303269052|ref|ZP_07354834.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS458]
gi|307068227|ref|YP_003877193.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
AP200]
gi|387626806|ref|YP_006062982.1| DEAD/DEAH box helicase [Streptococcus pneumoniae INV104]
gi|387759711|ref|YP_006066689.1| DEAD/DEAH box helicase [Streptococcus pneumoniae INV200]
gi|410476960|ref|YP_006743719.1| ATP-dependent RNA helicase [Streptococcus pneumoniae gamPNI0373]
gi|417679565|ref|ZP_12328961.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17570]
gi|417694475|ref|ZP_12343662.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47901]
gi|417696748|ref|ZP_12345926.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47368]
gi|417698980|ref|ZP_12348151.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41317]
gi|418076815|ref|ZP_12714048.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47502]
gi|418092190|ref|ZP_12729331.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44452]
gi|418096685|ref|ZP_12733796.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16531]
gi|418108014|ref|ZP_12745051.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41410]
gi|418110539|ref|ZP_12747560.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49447]
gi|418126249|ref|ZP_12763155.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44511]
gi|418130744|ref|ZP_12767627.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07643]
gi|418139918|ref|ZP_12776743.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13338]
gi|418144547|ref|ZP_12781342.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13494]
gi|418146842|ref|ZP_12783620.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13637]
gi|418148961|ref|ZP_12785723.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13856]
gi|418167190|ref|ZP_12803845.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17971]
gi|418169585|ref|ZP_12806227.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19077]
gi|418180949|ref|ZP_12817518.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41688]
gi|418185328|ref|ZP_12821869.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47283]
gi|418187578|ref|ZP_12824101.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47360]
gi|418189826|ref|ZP_12826338.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47373]
gi|418192038|ref|ZP_12828540.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47388]
gi|418214793|ref|ZP_12841527.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA54644]
gi|418221614|ref|ZP_12848267.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47751]
gi|418230371|ref|ZP_12856970.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP01]
gi|418234799|ref|ZP_12861375.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08780]
gi|419423639|ref|ZP_13963852.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43264]
gi|419453945|ref|ZP_13993915.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP03]
gi|419458186|ref|ZP_13998128.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02254]
gi|419478235|ref|ZP_14018059.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18068]
gi|419484830|ref|ZP_14024605.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43257]
gi|419489360|ref|ZP_14029109.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44386]
gi|419504337|ref|ZP_14044005.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47760]
gi|419506481|ref|ZP_14046142.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49194]
gi|419508671|ref|ZP_14048323.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49542]
gi|419510850|ref|ZP_14050491.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP141]
gi|419515103|ref|ZP_14054728.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
England14-9]
gi|419530527|ref|ZP_14070054.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40028]
gi|421211472|ref|ZP_15668454.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070035]
gi|421213518|ref|ZP_15670473.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070108]
gi|421215694|ref|ZP_15672615.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
gi|421221131|ref|ZP_15677964.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|421222508|ref|ZP_15679299.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|421232303|ref|ZP_15688944.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080076]
gi|421234489|ref|ZP_15691107.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061617]
gi|421238220|ref|ZP_15694790.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071247]
gi|421243506|ref|ZP_15700021.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081074]
gi|421245438|ref|ZP_15701936.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081685]
gi|421247828|ref|ZP_15704309.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082170]
gi|421249814|ref|ZP_15706271.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082239]
gi|421266588|ref|ZP_15717468.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR27]
gi|421271008|ref|ZP_15721862.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR48]
gi|421273139|ref|ZP_15723980.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR55]
gi|421279376|ref|ZP_15730182.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17301]
gi|421294878|ref|ZP_15745599.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56113]
gi|421296428|ref|ZP_15747137.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58581]
gi|421301457|ref|ZP_15752127.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA19998]
gi|421314475|ref|ZP_15765062.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA47562]
gi|444382571|ref|ZP_21180772.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8106]
gi|444386260|ref|ZP_21184321.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8203]
gi|444387771|ref|ZP_21185787.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS125219]
gi|444389316|ref|ZP_21187233.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS70012]
gi|444391706|ref|ZP_21189516.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS81218]
gi|444394603|ref|ZP_21192154.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0002]
gi|444398902|ref|ZP_21196377.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0007]
gi|444403416|ref|ZP_21200513.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0008]
gi|444404127|ref|ZP_21201089.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0009]
gi|444407649|ref|ZP_21204316.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0010]
gi|444417903|ref|ZP_21213901.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0360]
gi|444420547|ref|ZP_21216319.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0427]
gi|61223743|sp|P0A4D7.1|EXP9_STRPN RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
Full=Exported protein 9
gi|61223744|sp|P0A4D8.1|EXP9_STRR6 RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
Full=Exported protein 9
gi|14973078|gb|AAK75672.1| putative ATP-dependent RNA helicase [Streptococcus pneumoniae
TIGR4]
gi|15459096|gb|AAL00244.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076587|gb|ABJ54307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
gi|147756401|gb|EDK63442.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP11-BS70]
gi|147758636|gb|EDK65633.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS69]
gi|147760857|gb|EDK67827.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP18-BS74]
gi|147925839|gb|EDK76914.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP6-BS73]
gi|147927944|gb|EDK78964.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP9-BS68]
gi|183570214|gb|EDT90742.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1087-00]
gi|183572869|gb|EDT93397.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae SP195]
gi|183578956|gb|EDT99484.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae MLV-016]
gi|301794592|emb|CBW37036.1| DEAD box helicase family protein [Streptococcus pneumoniae INV104]
gi|301802300|emb|CBW35052.1| DEAD box helicase family protein [Streptococcus pneumoniae INV200]
gi|302597002|gb|EFL64125.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS455]
gi|302636322|gb|EFL66816.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS292]
gi|302638711|gb|EFL69174.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP-BS293]
gi|302641442|gb|EFL71807.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS458]
gi|302644048|gb|EFL74307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS457]
gi|302645526|gb|EFL75758.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS397]
gi|306409764|gb|ADM85191.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
AP200]
gi|332072430|gb|EGI82913.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17570]
gi|332199626|gb|EGJ13701.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41317]
gi|332200146|gb|EGJ14219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47368]
gi|332201024|gb|EGJ15095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47901]
gi|353746955|gb|EHD27613.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47502]
gi|353763545|gb|EHD44099.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44452]
gi|353768406|gb|EHD48930.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16531]
gi|353778291|gb|EHD58759.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41410]
gi|353781936|gb|EHD62376.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49447]
gi|353796189|gb|EHD76534.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44511]
gi|353802068|gb|EHD82368.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07643]
gi|353807013|gb|EHD87285.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13494]
gi|353811297|gb|EHD91539.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13856]
gi|353812417|gb|EHD92652.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13637]
gi|353829182|gb|EHE09316.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17971]
gi|353834176|gb|EHE14281.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19077]
gi|353843021|gb|EHE23066.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41688]
gi|353848612|gb|EHE28624.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47283]
gi|353849563|gb|EHE29568.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47360]
gi|353853553|gb|EHE33534.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47373]
gi|353855124|gb|EHE35094.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47388]
gi|353869523|gb|EHE49404.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA54644]
gi|353874924|gb|EHE54778.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47751]
gi|353885252|gb|EHE65041.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP01]
gi|353886421|gb|EHE66203.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08780]
gi|353904697|gb|EHE80147.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13338]
gi|379529850|gb|EHY95091.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02254]
gi|379565671|gb|EHZ30663.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18068]
gi|379573435|gb|EHZ38390.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40028]
gi|379581583|gb|EHZ46467.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43257]
gi|379586211|gb|EHZ51065.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43264]
gi|379586902|gb|EHZ51752.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44386]
gi|379605725|gb|EHZ70475.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47760]
gi|379608395|gb|EHZ73141.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49194]
gi|379611116|gb|EHZ75844.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49542]
gi|379626015|gb|EHZ90641.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP03]
gi|379631453|gb|EHZ96030.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP141]
gi|379635652|gb|EIA00211.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
England14-9]
gi|395572580|gb|EJG33175.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070035]
gi|395579272|gb|EJG39776.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070108]
gi|395579901|gb|EJG40396.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
gi|395585395|gb|EJG45779.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|395588676|gb|EJG49004.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|395594806|gb|EJG55041.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080076]
gi|395600343|gb|EJG60500.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061617]
gi|395603569|gb|EJG63705.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071247]
gi|395607005|gb|EJG67105.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081074]
gi|395607965|gb|EJG68061.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081685]
gi|395613189|gb|EJG73219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082170]
gi|395613508|gb|EJG73536.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082239]
gi|395866656|gb|EJG77784.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR27]
gi|395867222|gb|EJG78346.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR48]
gi|395874342|gb|EJG85428.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR55]
gi|395878869|gb|EJG89931.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17301]
gi|395893447|gb|EJH04434.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56113]
gi|395895301|gb|EJH06276.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58581]
gi|395899017|gb|EJH09961.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA19998]
gi|395913160|gb|EJH24013.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA47562]
gi|406369905|gb|AFS43595.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae gamPNI0373]
gi|444247988|gb|ELU54509.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8203]
gi|444251731|gb|ELU58199.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS125219]
gi|444251826|gb|ELU58293.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8106]
gi|444257916|gb|ELU64249.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS70012]
gi|444259845|gb|ELU66154.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0002]
gi|444264468|gb|ELU70543.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0008]
gi|444264962|gb|ELU70998.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS81218]
gi|444269638|gb|ELU75442.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0007]
gi|444271245|gb|ELU76996.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0010]
gi|444277356|gb|ELU82867.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0009]
gi|444282368|gb|ELU87637.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0360]
gi|444284223|gb|ELU89379.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0427]
Length = 524
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|226315226|ref|YP_002775122.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
gi|226098176|dbj|BAH46618.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
100599]
Length = 513
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 121/246 (49%), Gaps = 26/246 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + + +L++++V+V+DE D + N + +K++L +RQT+ SA++
Sbjct: 129 GRFMDHMRRRTIRLDAIEVVVLDEADEMLNMGF-IDDIKEILKEVP--ESRQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + QQ + ++ V + +P+ ++ +K K+ L L+ +P
Sbjct: 186 P---RAIQEIAQQFMNEPTIIQVKAKEVT-VPNIAQE-YMEVAEKQKFDVLCRLLDIHSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRAASLLEV 180
E IIF T VD LS + K + ++N R + L +
Sbjct: 241 ELAIIF--------------GRTKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKF 286
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G +LV+TD+AARG+D+ TH++NFD+P+ + Y+HR GRTGR + + +
Sbjct: 287 KEGTIEVLVATDVAARGLDISGVTHVFNFDIPQDSESYVHRIGRTGR---AGKTGLAITF 343
Query: 241 ITSEEL 246
+TS E+
Sbjct: 344 VTSREI 349
>gi|398353630|ref|YP_006399094.1| ATP-dependent RNA helicase RhlE [Sinorhizobium fredii USDA 257]
gi|390128956|gb|AFL52337.1| ATP-dependent RNA helicase RhlE [Sinorhizobium fredii USDA 257]
Length = 501
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKMKYQTLL-SLIQ 117
++P + L + Q + +V AI + RFV GK + + +L LI+
Sbjct: 187 TMPPEIQKLADRFLQNPERVEVARPASAAI-----TVTQRFVAAHGKDYEKRAVLRDLIR 241
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ IIF + + ++ F S G S V L +M+ SR A
Sbjct: 242 AQGELKNAIIFCNRKKDVAEL------------FRSLDRHGFS-VGALHGDMDQRSRMAM 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR S +T
Sbjct: 289 LASFKDGNIQLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFT 348
Query: 237 VTS 239
+ +
Sbjct: 349 IVT 351
>gi|334137246|ref|ZP_08510689.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF7]
gi|333605235|gb|EGL16606.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF7]
Length = 535
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 43/246 (17%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + KLE V+ +V+DE D + + + S+ L+ + R T+ SA
Sbjct: 129 GRLLDHINRKTIKLEDVKTVVLDEADEMLDMGFMDDIQSILSLVPA-----ERHTMLFSA 183
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHV---HVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
++P + + QQ T V V HV+A PL + +V +K K++ L LI
Sbjct: 184 TMPPN---IQKLAQQFLTNPQHVSVIPKHVSA--PL---IDQAYVEVHEKQKFEALSRLI 235
Query: 117 QSDAPESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
++PE I+F V E +E +K G A L +++
Sbjct: 236 DMESPELAIVFGRTKRRVDELAEALQKRGYAAEG-------------------LHGDLSQ 276
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
N R + + R G +LV+TD+AARG+D+ TH+ NFDLP+ Y+HR GRTGR
Sbjct: 277 NQRDNVMRKFRDGSIEVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGK 336
Query: 231 SDEKWT 236
WT
Sbjct: 337 EGTAWT 342
>gi|419521514|ref|ZP_14061109.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05245]
gi|379538814|gb|EHZ03994.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05245]
Length = 524
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 126/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL++++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQNIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|418171721|ref|ZP_12808345.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19451]
gi|419451027|ref|ZP_13991013.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP02]
gi|353835458|gb|EHE15552.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19451]
gi|379622732|gb|EHZ87366.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP02]
Length = 517
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 121 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 176
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 177 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 231
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 232 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 277
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 278 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 334
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 335 FVAPNEMGYLQIIEN 349
>gi|407789702|ref|ZP_11136801.1| ATP-dependent RNA helicase RhlB [Gallaecimonas xiamenensis 3-C-1]
gi|407205909|gb|EKE75872.1| ATP-dependent RNA helicase RhlB [Gallaecimonas xiamenensis 3-C-1]
Length = 430
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 25/229 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + ++ +F L+++QV+V+DE D +F+ + ++ L + + R + SA++
Sbjct: 143 GRIIDYFKQGVFDLKAIQVVVLDEADRMFDLGF-IKDIRYLFRRMPAPDQRLNLLFSATL 201
Query: 62 P---QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
Q + H ++ HV+ + + + + K+ K++ LL+LI+
Sbjct: 202 SFKVQELAYEH--------MNEPKHVNADPAQKTGTRISEELFYPSKEDKFKLLLTLIEE 253
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
D PE I+F + + G+ + V L+ + +LE+
Sbjct: 254 DWPERAIVFANTKIVCERVWGHMAADGHRVGLLTGDVPQKKRLKILED------------ 301
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
QG LV+TD+AARG+ +P TH+YNFDLP DY+HR GRTGR
Sbjct: 302 -FTQGKLDFLVATDVAARGLHIPAVTHVYNFDLPDDCEDYVHRIGRTGR 349
>gi|417933911|ref|ZP_12577231.1| DEAD/DEAH box helicase [Streptococcus mitis bv. 2 str. F0392]
gi|340770481|gb|EGR92996.1| DEAD/DEAH box helicase [Streptococcus mitis bv. 2 str. F0392]
Length = 525
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLHDIETLILDEADEMLN----MGFLEDIEAIISRVPESRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|225861416|ref|YP_002742925.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
Taiwan19F-14]
gi|298230290|ref|ZP_06963971.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255231|ref|ZP_06978817.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298503322|ref|YP_003725262.1| DEAD/DEAH box helicase [Streptococcus pneumoniae TCH8431/19A]
gi|387788640|ref|YP_006253708.1| cold-shock DEAD box protein A [Streptococcus pneumoniae ST556]
gi|417313062|ref|ZP_12099774.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04375]
gi|418083388|ref|ZP_12720585.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44288]
gi|418085577|ref|ZP_12722756.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47281]
gi|418094373|ref|ZP_12731500.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49138]
gi|418101042|ref|ZP_12738126.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7286-06]
gi|418119027|ref|ZP_12755984.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18523]
gi|418142096|ref|ZP_12778909.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13455]
gi|418151090|ref|ZP_12787836.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14798]
gi|418153319|ref|ZP_12790057.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16121]
gi|418164879|ref|ZP_12801548.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17371]
gi|418196212|ref|ZP_12832690.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47688]
gi|418198412|ref|ZP_12834871.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47778]
gi|418223785|ref|ZP_12850425.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5185-06]
gi|418228090|ref|ZP_12854707.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
3063-00]
gi|419425531|ref|ZP_13965727.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7533-05]
gi|419427644|ref|ZP_13967825.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5652-06]
gi|419429784|ref|ZP_13969948.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11856]
gi|419436377|ref|ZP_13976465.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
8190-05]
gi|419438621|ref|ZP_13978689.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13499]
gi|419445096|ref|ZP_13985111.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19923]
gi|419447242|ref|ZP_13987247.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7879-04]
gi|419449374|ref|ZP_13989370.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4075-00]
gi|419502236|ref|ZP_14041920.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47628]
gi|419519298|ref|ZP_14058904.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08825]
gi|419527922|ref|ZP_14067465.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17719]
gi|421287857|ref|ZP_15738620.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58771]
gi|421290152|ref|ZP_15740902.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA54354]
gi|421305543|ref|ZP_15756197.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62331]
gi|225727400|gb|ACO23251.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238917|gb|ADI70048.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
TCH8431/19A]
gi|327389770|gb|EGE88115.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04375]
gi|353754608|gb|EHD35220.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44288]
gi|353756286|gb|EHD36887.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47281]
gi|353764869|gb|EHD45417.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49138]
gi|353771503|gb|EHD52012.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7286-06]
gi|353790979|gb|EHD71360.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18523]
gi|353806347|gb|EHD86621.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13455]
gi|353814300|gb|EHD94526.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14798]
gi|353816870|gb|EHD97078.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16121]
gi|353829343|gb|EHE09476.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17371]
gi|353860830|gb|EHE40770.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47688]
gi|353862511|gb|EHE42443.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47778]
gi|353878583|gb|EHE58413.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5185-06]
gi|353880485|gb|EHE60300.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
3063-00]
gi|379138382|gb|AFC95173.1| cold-shock DEAD box protein A [Streptococcus pneumoniae ST556]
gi|379537028|gb|EHZ02213.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13499]
gi|379549962|gb|EHZ15064.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11856]
gi|379566075|gb|EHZ31066.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17719]
gi|379572789|gb|EHZ37746.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19923]
gi|379600449|gb|EHZ65230.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47628]
gi|379613198|gb|EHZ77911.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
8190-05]
gi|379614782|gb|EHZ79492.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7879-04]
gi|379617837|gb|EHZ82517.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5652-06]
gi|379618992|gb|EHZ83666.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7533-05]
gi|379621992|gb|EHZ86628.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4075-00]
gi|379641135|gb|EIA05673.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08825]
gi|395886420|gb|EJG97436.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58771]
gi|395887837|gb|EJG98851.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA54354]
gi|395904501|gb|EJH15415.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62331]
Length = 524
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|419495771|ref|ZP_14035488.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|421302943|ref|ZP_15753607.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA17484]
gi|379593857|gb|EHZ58668.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|395901565|gb|EJH12501.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA17484]
Length = 519
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|168491523|ref|ZP_02715666.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC0288-04]
gi|168493488|ref|ZP_02717631.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC3059-06]
gi|182684538|ref|YP_001836285.1| ATP-dependent RNA helicase [Streptococcus pneumoniae CGSP14]
gi|221232344|ref|YP_002511497.1| DEAD/DEAH box helicase [Streptococcus pneumoniae ATCC 700669]
gi|225855026|ref|YP_002736538.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae JJA]
gi|418074418|ref|ZP_12711671.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11184]
gi|418079024|ref|ZP_12716246.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4027-06]
gi|418081216|ref|ZP_12718426.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6735-05]
gi|418089950|ref|ZP_12727104.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43265]
gi|418098916|ref|ZP_12736013.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6901-05]
gi|418105697|ref|ZP_12742753.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44500]
gi|418115112|ref|ZP_12752098.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5787-06]
gi|418117270|ref|ZP_12754239.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6963-05]
gi|418123922|ref|ZP_12760853.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44378]
gi|418128466|ref|ZP_12765359.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP170]
gi|418137658|ref|ZP_12774496.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11663]
gi|418173983|ref|ZP_12810595.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41277]
gi|418178645|ref|ZP_12815228.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41565]
gi|418182454|ref|ZP_12819015.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43380]
gi|418217036|ref|ZP_12843716.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|419431974|ref|ZP_13972107.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP05]
gi|419440778|ref|ZP_13980823.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40410]
gi|419465129|ref|ZP_14005020.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04175]
gi|419469398|ref|ZP_14009266.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA06083]
gi|419471486|ref|ZP_14011345.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07914]
gi|419473652|ref|ZP_14013501.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13430]
gi|419497961|ref|ZP_14037668.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47522]
gi|419535050|ref|ZP_14074549.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17457]
gi|421281583|ref|ZP_15732380.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04672]
gi|421309995|ref|ZP_15760620.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62681]
gi|182629872|gb|ACB90820.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
CGSP14]
gi|183574224|gb|EDT94752.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC0288-04]
gi|183576330|gb|EDT96858.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC3059-06]
gi|220674805|emb|CAR69378.1| DEAD box helicase family protein [Streptococcus pneumoniae ATCC
700669]
gi|225724107|gb|ACO19960.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae JJA]
gi|353746551|gb|EHD27211.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4027-06]
gi|353748487|gb|EHD29139.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11184]
gi|353751955|gb|EHD32586.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6735-05]
gi|353761141|gb|EHD41713.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43265]
gi|353768898|gb|EHD49420.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6901-05]
gi|353775873|gb|EHD56352.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44500]
gi|353785196|gb|EHD65615.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5787-06]
gi|353787951|gb|EHD68349.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6963-05]
gi|353795742|gb|EHD76088.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44378]
gi|353798965|gb|EHD79288.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP170]
gi|353837939|gb|EHE18020.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41277]
gi|353842704|gb|EHE22750.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41565]
gi|353850691|gb|EHE30695.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43380]
gi|353870309|gb|EHE50182.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|353900613|gb|EHE76164.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11663]
gi|379536729|gb|EHZ01915.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04175]
gi|379544202|gb|EHZ09347.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA06083]
gi|379546202|gb|EHZ11341.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07914]
gi|379550816|gb|EHZ15912.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13430]
gi|379563211|gb|EHZ28215.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17457]
gi|379577848|gb|EHZ42765.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40410]
gi|379598794|gb|EHZ63579.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47522]
gi|379629055|gb|EHZ93656.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP05]
gi|395880848|gb|EJG91899.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04672]
gi|395909610|gb|EJH20485.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62681]
Length = 524
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|419493712|ref|ZP_14033437.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47210]
gi|379592285|gb|EHZ57101.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47210]
Length = 524
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|418194167|ref|ZP_12830656.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47439]
gi|353857745|gb|EHE37707.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47439]
Length = 524
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|418028611|ref|ZP_12667169.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNCM I-1630]
gi|354686831|gb|EHE86956.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNCM I-1630]
Length = 522
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 27/241 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL +++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNNIETLILDEADEMLN----MGFLEDIEAIISQVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + F+ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
D PE I+F ++ L F + G +++ N R +
Sbjct: 237 DQPELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRIIR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 284 DFKNGQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFV 343
Query: 239 S 239
S
Sbjct: 344 S 344
>gi|417846630|ref|ZP_12492623.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1073]
gi|339458263|gb|EGP70806.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1073]
Length = 524
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPESRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|391336487|ref|XP_003742611.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
[Metaseiulus occidentalis]
Length = 662
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 27/230 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+E L V LV+DE D + + + ++++L +S NRQTV SA+
Sbjct: 416 GRLNDLVEMMAVSLRKVSYLVLDEADRMLDMGFE-PQIRQILDYMTS--NRQTVMTSATW 472
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLH--HRFVICGKKMKYQTLLSLIQSD 119
P + R L Q D V V + ++ L S L RF + K+ LL+L++S
Sbjct: 473 PPNVRKLSAKYLQ-----DPVQVIIGSLD-LSSALTVTQRFRMVRSDEKFPILLNLMKSL 526
Query: 120 AP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASL 177
P + I+F G + L D ++ + S + + + + R A+L
Sbjct: 527 KPTDRAIVFCGRK--------------LTTDGVARKLQQSGINAESIHGDRDQREREAAL 572
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+R G +LV+TD+A+RG+D+PE T + NFD P++ +Y+HR GRTGR
Sbjct: 573 RHLRTGKSRILVATDVASRGLDVPEITVVVNFDFPQNIEEYVHRVGRTGR 622
>gi|421218219|ref|ZP_15675113.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 2070335]
gi|395582988|gb|EJG43437.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 2070335]
Length = 401
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 5 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 60
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 61 MPDAIK----RIGVQFMKA-PEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 115
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 116 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 161
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 162 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 218
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 219 FVAPNEMGYLQIIEN 233
>gi|167748599|ref|ZP_02420726.1| hypothetical protein ANACAC_03372 [Anaerostipes caccae DSM 14662]
gi|167651913|gb|EDR96042.1| DEAD/DEAH box helicase [Anaerostipes caccae DSM 14662]
Length = 478
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 119/257 (46%), Gaps = 28/257 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL +VQ LVIDE D + + + +K++L S + R ++F++
Sbjct: 130 GRVMDHIRRETLKLSNVQWLVIDEADLMLDMGF-IDEMKQIL-SLVPADCRISLFSATLK 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R I + V V A + + + ++ KY T L ++ + P
Sbjct: 188 PEIRELADEFI------PEAVLVMQEAGEEQAPAITEKLYFASQERKYDTFLDILMDENP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS--YKGSSDVLLLEEEMNFNSRAASLLE 179
+S +IF G + T +L L + G +L +M R ++
Sbjct: 242 QSCMIFCGTRE----------MTNVLFQKLRRKRIFCG-----MLHGDMEQKERLKTVNA 286
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R+GG L++TD+AARGID E +H+ N+D P Y+HR GRTGR S T S
Sbjct: 287 FRRGGFRFLIATDVAARGIDFEEISHVVNYDFPTGKETYVHRIGRTGRNGNSG---TAVS 343
Query: 240 IITSEELFVLQRYENEL 256
++T ++ +L++ E L
Sbjct: 344 LVTEDDQRMLKQVETYL 360
>gi|56461463|ref|YP_156744.1| ATP-dependent RNA helicase RhlB [Idiomarina loihiensis L2TR]
gi|61214743|sp|Q5QYF8.1|RHLB_IDILO RecName: Full=ATP-dependent RNA helicase RhlB
gi|56180473|gb|AAV83195.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
Length = 425
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 35/234 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L ++ +F L+ ++V+V+DE D +F+ + ++ LL + R + SA++
Sbjct: 142 GRLIDFYKQDLFSLKDIEVVVLDEADRMFDLGF-IDDIRYLLQKMPDPSKRLNLLFSATL 200
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNA-----IKPL---PSCLHHRFVICGKKMKYQTLL 113
+ ++ + H+NA ++PL + + K K+ LL
Sbjct: 201 -------------SYRVQELAYEHMNAPTKLEVEPLQKTATRVTEELFYPSKPEKFPLLL 247
Query: 114 SLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
+LI+ D P+ I+F + K G ++N ++ LL ++ R
Sbjct: 248 TLIEEDWPDKAIVFANTKHGCEKVHGW---------LVANEHRAG----LLTGDVPQKKR 294
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + +G LV+TD+AARG+ +PE TH+YNFDLP DY+HR GRTGR
Sbjct: 295 LRILEDFAEGKLDFLVATDVAARGLHIPEVTHVYNFDLPDDCEDYVHRIGRTGR 348
>gi|421227768|ref|ZP_15684470.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 2072047]
gi|395594052|gb|EJG54292.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 2072047]
Length = 415
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 19 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 74
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 75 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 129
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 130 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 175
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 176 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 232
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 233 FVAPNEMGYLQIIEN 247
>gi|421871323|ref|ZP_16302945.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus GI-9]
gi|372459950|emb|CCF12494.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus GI-9]
Length = 506
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 128/264 (48%), Gaps = 36/264 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L+++Q LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 129 GRLIDHINRRTIRLQNIQTLVLDEADEMLNMGF-IEEIESILEQIP--DERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + + Q+ + + V + +P+ + ++ +K+K+ + L+ +P
Sbjct: 186 P---RQIESLAQRYLKNPEKITVKAKEVT-VPN-IEQVYMEVQEKLKFDVMTRLLDIQSP 240
Query: 122 ESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
E I+F V E SE K G + + G ++ R +
Sbjct: 241 ELAIVFGRTKRRVDELSEALNKRG----------YSAEGIHG---------DLTQAKRDS 281
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L + ++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +
Sbjct: 282 VLRQFKEGTIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKTG 338
Query: 236 TVTSIITSEELFVLQRYENELKFK 259
T+ +TS E+ L+ E+ K K
Sbjct: 339 VATTFVTSREIDHLRMIEHVTKRK 362
>gi|172056656|ref|YP_001813116.1| DEAD/DEAH box helicase [Exiguobacterium sibiricum 255-15]
gi|171989177|gb|ACB60099.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
255-15]
Length = 530
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + L+ VQ +++DE D + N V ++K+L + RQT+ SA++
Sbjct: 129 GRLMDHMNRKTLNLDHVQTVILDEADEMLNMGF-VEDIEKILGTLPPT--RQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + + T H+ V A + + F+ + K+ L LI +D+P
Sbjct: 186 PPQIRKIADRFMTTPT-----HIKVKAKEMTVENIDQSFIELKESQKFDVLCRLIDTDSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E IIF ++KK + + L+ Y L ++ R + +
Sbjct: 241 ELSIIF-----GRTKKRVDEMTEGLI----QRGYTADG----LHGDLTQAKRDQVIRRFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR
Sbjct: 288 KGTIDILVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR 333
>gi|170742455|ref|YP_001771110.1| DEAD/DEAH box helicase [Methylobacterium sp. 4-46]
gi|168196729|gb|ACA18676.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
Length = 482
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 117/248 (47%), Gaps = 38/248 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKLVPF-----TRQTLFFSA 185
Query: 60 SIPQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P + FLHN V + V S + R V G + K +TL
Sbjct: 186 TMPPEIQRLADDFLHNP----------VRIEVARPASTASTIAQRLVATGGEGHEKRKTL 235
Query: 113 LSLIQSDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFN 171
LI+ +G+IF + + ++ L L+N +V L +M+
Sbjct: 236 RGLIRGAVELRNGLIFCNRKRDVAQ----------LQRSLANH---GFNVAALHGDMDQR 282
Query: 172 SRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS 231
+R A+L R G LLV++D+AARG+D+P +H++NFD+P A DY+HR GRTGR S
Sbjct: 283 ARMAALDAFRSGEVPLLVASDVAARGLDIPAVSHVFNFDVPHHAEDYVHRIGRTGRAGRS 342
Query: 232 DEKWTVTS 239
+T+
Sbjct: 343 GAAFTLVG 350
>gi|323450830|gb|EGB06709.1| hypothetical protein AURANDRAFT_54120, partial [Aureococcus
anophagefferens]
Length = 419
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 22/247 (8%)
Query: 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQK 75
++V+ +V+DEVD + ++ S + L ++ RQTVFA+AS+ Q R +
Sbjct: 168 DAVRYVVVDEVDAFLDPAR--SDDRAALHAFLFRETRQTVFATASLEQPRHLAERLASMR 225
Query: 76 WTKSDVVHVHVNAIKPLPSCLHH-RFVICGKKMKYQTLLSLIQ----SDAPESGIIFVGE 130
W+K +V V A + P L H V+ K K L +++ S + I+F E
Sbjct: 226 WSKKAPSYVRVGAAEATPGSLSHFSAVVPDKGAKLAVLRKMLRDVKRSSTRFAAIVFFDE 285
Query: 131 QSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVS 190
+ + D L + + VL + + +SR + G +L+
Sbjct: 286 RRPLQA----------IADKLEQADGVACAVL--DGRDDLSSRKREVDAYTAGDVDVLLC 333
Query: 191 TDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQ 250
TD+AARG+D P TT + FD P A YLHRAGR R V +++ + E F L+
Sbjct: 334 TDLAARGLDAPRTTLVVQFDFPGDATAYLHRAGRAARL---GRAGAVLTLLEAREAFALE 390
Query: 251 RYENELK 257
R N L+
Sbjct: 391 RLANYLR 397
>gi|402814785|ref|ZP_10864378.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
gi|402507156|gb|EJW17678.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
Length = 526
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 122/253 (48%), Gaps = 40/253 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + +L+ V +V+DE D + + + ++S+ L+ RQT+ SA
Sbjct: 129 GRLLDHINRKTIRLDDVATVVLDEADEMLDMGFMEDITSILSLVP-----EQRQTMLFSA 183
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + + L N ++ V+ HV+A PL + ++ +++K+ L L+ +
Sbjct: 184 TMPPNIQKLANQFLREPEHVSVMPKHVSA--PL---IDQAYIEVPERVKFDALSRLLDME 238
Query: 120 APESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
+PE I+F V E SE +K G + ++ G +++ N R
Sbjct: 239 SPELAIVFGRTKRRVDELSEALQKRG----------YSADGLHG---------DLSQNQR 279
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ + R G +LV+TD+AARG+D+ TH+ NFDLP+ Y+HR GRTGR
Sbjct: 280 DTVMRKFRDGSIDVLVATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGS 339
Query: 234 KWTVTSIITSEEL 246
W S +T E+
Sbjct: 340 AW---SFVTPREI 349
>gi|322377346|ref|ZP_08051837.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M334]
gi|321281546|gb|EFX58555.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M334]
Length = 524
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPESRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|319937469|ref|ZP_08011874.1| helicase [Coprobacillus sp. 29_1]
gi|319807309|gb|EFW03918.1| helicase [Coprobacillus sp. 29_1]
Length = 520
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 131/256 (51%), Gaps = 26/256 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+ + + K+ ++ +V+DE D + N V ++ +L + + +N+QTV SA++
Sbjct: 131 GRVQDLMRRRVLKINNIDFMVLDEADEMLNMGF-VEDIETILKA--TPDNKQTVLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I + + D +H+ + + S + + K++TL ++ S
Sbjct: 188 PATIK----KIASNYMQDDYMHIQIKSKTKTASTVSQYYFETRPTNKFETLCRILDSRQM 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E+ IIF K+K++ + + +++ + DV + +++ N R +L +
Sbjct: 244 ENTIIFC-----KTKRSVD--------EVVASMQQKHYDVEAMHGDLSQNQRTNTLKRFK 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G LV+TD+AARGID+ +H+ N+++P+ Y+HR GRTGR +++K S++
Sbjct: 291 SGHIQYLVATDVAARGIDVDNISHVINYEMPQDEELYIHRIGRTGR---ANKKGEAYSLV 347
Query: 242 TSEE---LFVLQRYEN 254
T+ E L +Q+ N
Sbjct: 348 TNREKNFLMSIQKRTN 363
>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 536
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 125/255 (49%), Gaps = 31/255 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + +L+ VQ +V+DE D + + + + S+ KL+ RQT+ SA
Sbjct: 129 GRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVP-----EERQTLLFSA 183
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + + L + + V+ HV+A PL + ++ ++ K++ L L+ +
Sbjct: 184 TMPANIQKLASQFLKDPEHVSVIPKHVSA--PL---IDQAYIEVPERQKFEALSRLLDME 238
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG---SSDVLLLEEEMNFNSRAAS 176
+PE I+F T VD L+ + + S+D L +++ + R
Sbjct: 239 SPELAIVFG--------------RTKRRVDELAEALQKRGYSADGL--HGDLSQHQRDTV 282
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ + R G +LV+TD+AARG+D+ TH+ NFDLP+ Y+HR GRTGR W+
Sbjct: 283 MRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWS 342
Query: 237 VTSIITSEELFVLQR 251
+ + L+ ++R
Sbjct: 343 FVTPREMDHLYFIER 357
>gi|421241060|ref|ZP_15697605.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
gi|395607438|gb|EJG67535.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
Length = 524
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>gi|55823472|ref|YP_141913.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
gi|55739457|gb|AAV63098.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
Length = 528
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 27/241 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL +++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNNIETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + F+ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
D PE I+F ++ L F + G +++ N R +
Sbjct: 237 DQPELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRIIR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 284 DFKNGQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFV 343
Query: 239 S 239
S
Sbjct: 344 S 344
>gi|55821544|ref|YP_139986.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
gi|55737529|gb|AAV61171.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
Length = 528
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 27/241 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL +++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNNIETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + F+ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
D PE I+F ++ L F + G +++ N R +
Sbjct: 237 DQPELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRIIR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 284 DFKNGQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFV 343
Query: 239 S 239
S
Sbjct: 344 S 344
>gi|419766821|ref|ZP_14292997.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus mitis SK579]
gi|383353731|gb|EID31335.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus mitis SK579]
Length = 524
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPESRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|293374562|ref|ZP_06620881.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
gi|292646811|gb|EFF64802.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
Length = 379
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 133/265 (50%), Gaps = 30/265 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + +LI+K +++ +++DE D L +++ K + + K ++ +RQ SA
Sbjct: 132 GRILELIKKKKITAHTLKTIILDEADSLLDNTNTKTIQDIIK-----TTLRDRQLCLFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSLIQS 118
SI ++ + L + K V+ +A++ P+ H F + G++ K++ L LI +
Sbjct: 187 SISENTQTLATSLM----KEPVILKTADAVEMNPNIAH--FYLKGERRDKFELLRKLIVA 240
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ PE +IFV + S + + L+ K + ++ + R +L
Sbjct: 241 ENPERALIFVNQND----------SMQEIAEKLNYHQK---ETFVMRGNIQKEERKRALD 287
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
R G LLVS+D+ ARG+D+PE THI + D P + +YLHRAGRT R S +
Sbjct: 288 LFRSGKIKLLVSSDLTARGLDIPEVTHIIHLDCPANPNEYLHRAGRTARGYASGKSI--- 344
Query: 239 SIITSEELFVLQRYENELKFKSEEL 263
IIT ++L L++Y+ + + +E+
Sbjct: 345 CIITDKDLSTLKKYQKKFNIQFKEM 369
>gi|366166119|ref|ZP_09465874.1| DEAD/DEAH box helicase [Acetivibrio cellulolyticus CD2]
Length = 386
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 126/267 (47%), Gaps = 47/267 (17%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLF--NSSKQVSSLKKLLASYSSCNNRQTVFASA 59
G + +LI+K +++ ++IDE D L N+++ V ++ K S+ RQ + SA
Sbjct: 132 GRILELIKKRKISAHTIKTIIIDEADRLMDENNTEFVKAVIK-----STLKERQVMAYSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+IP+ + I ++ ++ V+ V +P + H + K+ K + L L++
Sbjct: 187 TIPKR---VETGIIEQMKEAQVIRVEEKL--SVPDTISHMCFLAEKRDKIEVLRKLVRIL 241
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK----------GSSDVLLLEEEMN 169
P+ I+FV Q GN ++ ++ K G++ L
Sbjct: 242 EPQKAIVFVNNQ-------GNE------IEIFTSKLKYHGLGVEGIHGTTHKL------- 281
Query: 170 FNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKP 229
R ++ E + G LL+++DIAARG+ + THI+N D+P Y+HR GR+GR
Sbjct: 282 --ERKKAMEEFKSGKIQLLIASDIAARGLHIEGVTHIFNIDIPEDVKAYVHRVGRSGR-- 337
Query: 230 FSDEKWTVTSIITSEELFVLQRYENEL 256
+ SI T EL ++++YE EL
Sbjct: 338 -NGNTGMAVSIATKRELELIKKYEKEL 363
>gi|16126090|ref|NP_420654.1| DEAD/DEAH box helicase [Caulobacter crescentus CB15]
gi|221234860|ref|YP_002517296.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
gi|13423288|gb|AAK23822.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
crescentus CB15]
gi|220964032|gb|ACL95388.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
Length = 517
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 114/232 (49%), Gaps = 30/232 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L E+ + VQ LV+DE D + + + ++++ + +QT+F SA++
Sbjct: 132 GRLLDHFERGKLLMTGVQFLVVDEADRMLDMG-FIPDIERIF--KMTPPKKQTLFFSATM 188
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P ++FL + ++ + + + ++ + L + K K L +LI
Sbjct: 189 PPEITRLTKQFLRDPVRIEVARPATTNANI-------TQLLVKVPSSDPKAKRLALRALI 241
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAA 175
+ E+GI+F ++E VD ++ S K D + +++ R
Sbjct: 242 EKAGIETGIVFCNRKTE--------------VDIVAKSLKVHGYDAAPIHGDLDQTQRMK 287
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L + R G +LV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 288 TLADFRSGALKILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGR 339
>gi|383753236|ref|YP_005432139.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381365288|dbj|BAL82116.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 411
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 133/261 (50%), Gaps = 37/261 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSK--QVSSLKKLLASYSSCNNRQTVFASA 59
G + +L +K+ KL+ V++LV+DE D LF+ + + +LL +RQ + SA
Sbjct: 131 GRIIELAQKNKLKLQHVKMLVLDEFDRLFDDQNMGNTADVVRLLPE-----DRQVIMVSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVV-HVHVNAIKPLPSCLHHR---FVICGKKMKYQTLLSL 115
+ P+ + ++D + H + ++ P+ + R + + + K +T+ L
Sbjct: 186 TAPK----------KALERADFLQHPEIIKVEADPASQNQRENLYRMTPFRSKVETVRHL 235
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ A + G++F+ + + + +L Y+G LL N +R
Sbjct: 236 ARRLAVKRGLVFINKVFDAER---------ILAQL---RYEGFMVGTLLGHN-NKQARQK 282
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
++ + + G LL+STD+AARG+D+PE +++N DLP SA YLHRAGRT R + K
Sbjct: 283 AIADFKAGRIKLLLSTDLAARGLDIPEVDYVFNLDLPESAEVYLHRAGRTAR---AGAKG 339
Query: 236 TVTSIITSEELFVLQRYENEL 256
TV ++ ++E + L++ E +L
Sbjct: 340 TVITLADNKEAYKLEQLERKL 360
>gi|445381685|ref|ZP_21427119.1| ATP-dependent RNA helicase, dead/deah box family protein
[Streptococcus thermophilus MTCC 5460]
gi|445394588|ref|ZP_21428854.1| ATP-dependent RNA helicase, dead/deah box family protein
[Streptococcus thermophilus MTCC 5461]
gi|444748875|gb|ELW73823.1| ATP-dependent RNA helicase, dead/deah box family protein
[Streptococcus thermophilus MTCC 5461]
gi|444748978|gb|ELW73920.1| ATP-dependent RNA helicase, dead/deah box family protein
[Streptococcus thermophilus MTCC 5460]
Length = 522
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 27/241 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL +++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNNIETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + F+ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
D PE I+F ++ L F + G +++ N R +
Sbjct: 237 DQPELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRIIR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 284 DFKNGQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFV 343
Query: 239 S 239
S
Sbjct: 344 S 344
>gi|307706894|ref|ZP_07643696.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
gi|307617767|gb|EFN96932.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
Length = 524
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPESRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|405382888|ref|ZP_11036664.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF142]
gi|397320649|gb|EJJ25081.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF142]
Length = 490
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 115/248 (46%), Gaps = 38/248 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 120 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 174
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTL 112
++P RFL N + + V+ S + RFV K K TL
Sbjct: 175 TMPPEIQKLADRFLQNPER----------IEVSKPASASSTITQRFVASHDKDYEKRATL 224
Query: 113 LSLIQSDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFN 171
LI++ ++ IIF + + + D + + V L +M+
Sbjct: 225 RDLIRAQTDLKNAIIFCNRKKD-------------VADLFRSLERHGFSVGALHGDMDQR 271
Query: 172 SRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS 231
SR A L + G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S
Sbjct: 272 SRMAMLANFKDGNIQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRS 331
Query: 232 DEKWTVTS 239
+T+ +
Sbjct: 332 GASFTIVT 339
>gi|386716158|ref|YP_006182482.1| ATP-dependent RNA helicase YfmL [Halobacillus halophilus DSM 2266]
gi|384075715|emb|CCG47211.1| probable ATP-dependent RNA helicase YfmL [Halobacillus halophilus
DSM 2266]
Length = 388
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 132/262 (50%), Gaps = 34/262 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +L++K K ++ +V+DE D L + + ++ +L S +RQ + SA++
Sbjct: 141 GRVYELMKKKKVKAHEIKTVVMDEADQLL-VPEHIRTVNDILESM--LKDRQILLFSATM 197
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P+ + F+ +++VV V KP + H +++C + K + L L
Sbjct: 198 PEEVIDVAQEFMDE-------ETEVVRVETEIQKP---DVEHTYMVCEDRDKIEVLRKLA 247
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ D + G+ F+ + ++ N + L +YK + D+ LL + N RA +
Sbjct: 248 RMDGFK-GLAFLQDIAKL-----NVFAEKL-------TYK-NLDLGLLHSDANKEQRAKA 293
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ E R+G LL++TD+AARG+D+ + HI N D+P+ A Y+HRAGRT R SD T
Sbjct: 294 IREFRKGDYSLLLATDVAARGLDIIDINHIVNLDVPKDATAYIHRAGRTARLGASD--GT 351
Query: 237 VTSIITSEELFVLQRYENELKF 258
V S++ E L ++ +L
Sbjct: 352 VISLVNPVEQKRLMKHARDLDL 373
>gi|385262989|ref|ZP_10041086.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
gi|385188964|gb|EIF36434.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
Length = 525
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPESRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|392429044|ref|YP_006470055.1| ATP-dependent RNA helicase [Streptococcus intermedius JTH08]
gi|419776490|ref|ZP_14302412.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus intermedius SK54]
gi|383845901|gb|EID83301.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus intermedius SK54]
gi|391758190|dbj|BAM23807.1| ATP-dependent RNA helicase [Streptococcus intermedius JTH08]
Length = 514
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 118/253 (46%), Gaps = 32/253 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL V++L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHVEILILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K D HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKDPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASL 177
+ PE I+F T VD L+ +K + +++ R L
Sbjct: 237 EQPELSIVF--------------GRTKRRVDELTRGFKLRGFRAEGIHGDLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQ 250
+ E+ LQ
Sbjct: 342 --FVAPNEMGYLQ 352
>gi|13470499|ref|NP_102068.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
gi|14021241|dbj|BAB47854.1| probable ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
Length = 527
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 125/263 (47%), Gaps = 43/263 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCN----NRQTVFA 57
G L E+ L V++LVIDE D + + + ++++ C RQT+F
Sbjct: 142 GRLLDHRERGKLLLNGVEILVIDEADRMLDMG-FIPDIERI------CEMIPFTRQTLFF 194
Query: 58 SASIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQ 110
SA++P +FLH V V V+ + + R V G K K +
Sbjct: 195 SATMPPEITKLTEKFLHAP----------VRVEVSKAASAATNITQRLVKSGSKPWDKRE 244
Query: 111 TLLSLIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEM 168
TL +LI+++ E + IIF + E S+ L L + D L +M
Sbjct: 245 TLRNLIKAEDAELKNAIIFCNRKVEVSE---------LFRSLLKYDF----DAGALHGDM 291
Query: 169 NFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRK 228
+ +R L R G LV++D+AARG+D+P+ +H++N+D+P A DY+HR GRTGR
Sbjct: 292 DQRARMQMLANFRDGKLRYLVASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRA 351
Query: 229 PFSDEKWTVTSIITSEELFVLQR 251
S + +T+ + ++ + ++R
Sbjct: 352 GRSGKSFTIATKSDTKYIDAIER 374
>gi|451343566|ref|ZP_21912637.1| hypothetical protein HMPREF9943_00862 [Eggerthia catenaformis OT
569 = DSM 20559]
gi|449337663|gb|EMD16820.1| hypothetical protein HMPREF9943_00862 [Eggerthia catenaformis OT
569 = DSM 20559]
Length = 519
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 132/265 (49%), Gaps = 25/265 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+ + + KL+ + V+DE D + N + ++ +L+S RQT+ SA++
Sbjct: 127 GRVMDLMRRKVLKLDGIHYFVLDEADEMLNMG-FIEDIETILSSVPL--ERQTILFSATM 183
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + I + K D H+ + +++ + + F + +K++ + ++ S
Sbjct: 184 PEGIK----KIASSYMKEDYEHIQIKSVQKTATTVKQYFYVVKNNVKFEAVCRVLDSIEK 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
ES IIF ++K++ VD L+N V + +++ ++R +L
Sbjct: 240 ESIIIFC-----RTKRS---------VDELTNQLATHKFHVASIHGDIDQDARMRTLRRF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++ +L++TD+AARGID+ +H+ N++LP+ Y+HR GRTGR + + S
Sbjct: 286 KEKQIPILIATDVAARGIDVDHVSHVINYELPQEDELYIHRIGRTGR---AGQTGIAYSF 342
Query: 241 ITSEELFVLQRYENELKFKSEELTL 265
++ E+ L+ E + K EEL +
Sbjct: 343 VSPREINYLRSIERKTKSHFEELKI 367
>gi|428219550|ref|YP_007104015.1| DEAD/DEAH box helicase [Pseudanabaena sp. PCC 7367]
gi|427991332|gb|AFY71587.1| DEAD/DEAH box helicase domain protein [Pseudanabaena sp. PCC 7367]
Length = 503
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 129/255 (50%), Gaps = 29/255 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+++ +LE+++ V+DE D + N + ++K+LA+ + +RQT F SA++
Sbjct: 129 GRVIDLMDRGHLRLENIRFFVLDEADEMLNMGF-IQDVEKILAATPA--DRQTAFFSATM 185
Query: 62 P-QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSLIQSD 119
P Q +R + + D V + V A + P + + + + + K + LL ++ +
Sbjct: 186 PSQVKRLAKSYL------IDPVMIKVEAEQRTPDRIEQQAYVVPRHLSKEEALLPILDLE 239
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLL-VDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
AP + IIFV ++K + ++ L D+ + Y G+ + R + L
Sbjct: 240 APHASIIFV-----RTKDSARRLTSMLQEYDYSVDEYHGN---------LTQVQRESLLR 285
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
R L+V+TDIAARG+D+ TH+ N D+P Y+HR GRTGR +
Sbjct: 286 RFRNQQVKLVVATDIAARGLDIDSLTHVINLDIPDDLEKYVHRIGRTGR---AGRTGKAI 342
Query: 239 SIITSEELFVLQRYE 253
+I+TS E + +++ E
Sbjct: 343 AILTSRERYKVRQLE 357
>gi|307705294|ref|ZP_07642156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
gi|307621081|gb|EFO00156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
Length = 520
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 127/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPESRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFATMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|372209681|ref|ZP_09497483.1| DEAD/DEAH box helicase [Flavobacteriaceae bacterium S85]
Length = 372
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 124/264 (46%), Gaps = 24/264 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G LC L+++ + +++LV+DE D + S + L ++L + N T SA+
Sbjct: 132 GRLCDLLDRSAIDISHIKMLVLDEADEML-SMGFLPDLNRILKFTTGTKN--TWLFSATF 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L++ + K ++ V V V A + + + H+++ K TL+S ++S
Sbjct: 189 PNA---LNSLV--KTYMNNPVRVEVEANQLINENISHKYISTTLNQKLDTLISFVESRGV 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E GI+F K+K L + S + +LE +M R SL +
Sbjct: 244 EKGIVFC-----KTKLGAQKLKEELEEEGFS--------IAVLEGDMGQRDREKSLRSFK 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G LLVSTD+AARGID+P ++ ++ LP ++HR+GRT R K +I+
Sbjct: 291 NGASQLLVSTDVAARGIDIPNVNYVIHYQLPEKTEYFVHRSGRTAR---GGNKGLSLAIV 347
Query: 242 TSEELFVLQRYENELKFKSEELTL 265
S E+ L + + E K + TL
Sbjct: 348 LSNEVEQLHQLQKEFKIYFGKYTL 371
>gi|410458653|ref|ZP_11312411.1| DEAD/DEAH box helicase [Bacillus azotoformans LMG 9581]
gi|409931248|gb|EKN68234.1| DEAD/DEAH box helicase [Bacillus azotoformans LMG 9581]
Length = 501
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 124/257 (48%), Gaps = 26/257 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + +L+++QV+V+DE D + N + ++ +L RQT+ SA++
Sbjct: 129 GRLMDHMNRKTIRLQNIQVVVLDEADEMLNMGF-IEDIEAILKEVPEV--RQTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P+ R+ N + +D V + V A + + ++ +K K+ L L+ ++
Sbjct: 186 PEPIRKIAENFM------NDPVQIKVKAKEMTVPNIEQYYIEMQEKKKFDVLTRLLDMES 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F G + + A +T + + G ++ R++ L +
Sbjct: 240 PELAIVF-GRTKRRVDELSEALNTR---GYAAEGIHG---------DLTQAKRSSVLKKF 286
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +T
Sbjct: 287 KAGTIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGLAYT---F 343
Query: 241 ITSEELFVLQRYENELK 257
+T E+ L+ E K
Sbjct: 344 VTPREIGQLKNIERTTK 360
>gi|399077018|ref|ZP_10752254.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
gi|398036112|gb|EJL29334.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
Length = 663
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 116/232 (50%), Gaps = 30/232 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L E+ + VQ++V+DE D + + + ++++ + +QT+F SA++
Sbjct: 132 GRLLDHFERGGLLMTGVQIMVVDEADRMLDMGF-IPDIERIF--KMTPPKKQTLFFSATM 188
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P ++FL + ++ + ++ + ++ + L + K K L +LI
Sbjct: 189 PPEITRLTKQFLRDPVRIEASRPATTNENI-------TQLMVKVPSSDPKAKRLALRALI 241
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAA 175
+ E+GI+F ++E VD ++ S K D + +++ + R
Sbjct: 242 EKAQIETGIVFCNRKTE--------------VDVVAKSLKSHGFDAAAIHGDLDQSQRMK 287
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L R G +LV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 288 TLAAFRDGSLKILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGR 339
>gi|114569874|ref|YP_756554.1| DEAD/DEAH box helicase [Maricaulis maris MCS10]
gi|114340336|gb|ABI65616.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
Length = 498
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 113/229 (49%), Gaps = 28/229 (12%)
Query: 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQH-----RRFLH 69
+ VQ+LV+DE D + + + L+K+ + RQT+F SA++P+ RFL
Sbjct: 144 MTGVQMLVVDEADRMLDMG-FIPDLEKIFSLVPPAPRRQTLFFSATMPKEIQSLVDRFLR 202
Query: 70 NCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVG 129
+ + + ++ ++ + L R K K L + + ++GIIF
Sbjct: 203 DPERVEVSRPAQTGANI-------TQLMIRLTDNSAKAKRLALRQAMSREGVKNGIIFSN 255
Query: 130 EQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEVRQGGGYLL 188
+ + VD ++ S + + +++ ++R A+L + + G L
Sbjct: 256 RKRD--------------VDVVARSLQRHGFSAAPIHGDLDQSARTATLADFKAGTLRFL 301
Query: 189 VSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
V++D+AARG+D+P+ +H++N+D+P A DY+HR GRTGR S E T+
Sbjct: 302 VASDVAARGLDIPDVSHVFNYDMPHHADDYVHRIGRTGRAGKSGESVTI 350
>gi|386087169|ref|YP_006003043.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
thermophilus ND03]
gi|386345260|ref|YP_006041424.1| ATP-dependent RNA helicase [Streptococcus thermophilus JIM 8232]
gi|387910270|ref|YP_006340576.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
thermophilus MN-ZLW-002]
gi|312278882|gb|ADQ63539.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
thermophilus ND03]
gi|339278721|emb|CCC20469.1| ATP-dependent RNA helicase [Streptococcus thermophilus JIM 8232]
gi|387575205|gb|AFJ83911.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
thermophilus MN-ZLW-002]
Length = 528
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 27/241 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL +++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNNIETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + F+ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
D PE I+F ++ L F + G +++ N R +
Sbjct: 237 DQPELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRIIR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G ++V+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 284 DFKNGQIDIMVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFV 343
Query: 239 S 239
S
Sbjct: 344 S 344
>gi|15965498|ref|NP_385851.1| ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
gi|334316380|ref|YP_004548999.1| DEAD/DEAH box helicase [Sinorhizobium meliloti AK83]
gi|384529564|ref|YP_005713652.1| DEAD/DEAH box helicase [Sinorhizobium meliloti BL225C]
gi|384536104|ref|YP_005720189.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
SM11]
gi|407720695|ref|YP_006840357.1| ATP-dependent RNA helicase [Sinorhizobium meliloti Rm41]
gi|433613528|ref|YP_007190326.1| Superfamily II DNA and RNA helicase [Sinorhizobium meliloti GR4]
gi|15074679|emb|CAC46324.1| Putative ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
gi|333811740|gb|AEG04409.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
BL225C]
gi|334095374|gb|AEG53385.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
gi|336032996|gb|AEH78928.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
SM11]
gi|407318927|emb|CCM67531.1| ATP-dependent RNA helicase [Sinorhizobium meliloti Rm41]
gi|429551718|gb|AGA06727.1| Superfamily II DNA and RNA helicase [Sinorhizobium meliloti GR4]
Length = 499
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKMKYQTLL-SLIQ 117
++P + L + Q + +V AI + RFV GK + + +L LI+
Sbjct: 187 TMPPEIQKLADRFLQNPERLEVARRSSTAI-----TVTQRFVAAHGKDYEKRAVLRELIR 241
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
S ++ IIF + + ++ F S G S V L +M+ SR A
Sbjct: 242 SQEDLKNAIIFCNRKKDVAEL------------FRSLDRHGFS-VGALHGDMDQRSRMAM 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR S +T
Sbjct: 289 LANFKDGNIKLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFT 348
Query: 237 VTS 239
+ +
Sbjct: 349 IVT 351
>gi|347536498|ref|YP_004843923.1| putative ATP-dependent RNA helicase [Flavobacterium branchiophilum
FL-15]
gi|345529656|emb|CCB69686.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
[Flavobacterium branchiophilum FL-15]
Length = 432
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 123/257 (47%), Gaps = 24/257 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+E+ + L+ VQ +V+DE D + SL K+ Y N RQ +F +
Sbjct: 131 GRLLDLLEQKVLNLQHVQFVVLDEADEMMAILH--DSLTKI-EQYLPKNKRQFLFTAT-- 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ L +QQ ++K+ + V K + HH +VI K LL L+ S
Sbjct: 186 --YSVGLKQLVQQNFSKNTAIITSVVGTKTNTNIKHH-YVIVDPIEKLAVLLHLLNSKPN 242
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ GIIF K+K A N + L + ++ SS + ++M + + R
Sbjct: 243 QKGIIFC-----KTKAAVNKLAKNLAIKKFTSGAIHSSLTQPIRDKM--------MSQFR 289
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARGID+ + +I N+ LP + Y+HR+GR+ R + K V +II
Sbjct: 290 AGHIPILVATDLAARGIDIDDIQYIVNYHLPDTLETYIHRSGRSAR---NTHKGLVYNII 346
Query: 242 TSEELFVLQRYENELKF 258
EEL LQ E ++
Sbjct: 347 QEEELAQLQTIEKAIEL 363
>gi|39935543|ref|NP_947819.1| ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009]
gi|192291134|ref|YP_001991739.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris TIE-1]
gi|39649396|emb|CAE27918.1| possible ATP-dependent RNA helicase [Rhodopseudomonas palustris
CGA009]
gi|192284883|gb|ACF01264.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
TIE-1]
Length = 472
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 121/255 (47%), Gaps = 43/255 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++L+IDE D + + + + KL+ RQT+F +A
Sbjct: 131 GRLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERICKLVPF-----TRQTLFFTA 185
Query: 60 SIPQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P R FLHN + + +K V V + V CG++ K +TL
Sbjct: 186 TMPTEIRRITETFLHNPEKIEVSKPASTAVTVTQSQ----------VPCGREPHEKRETL 235
Query: 113 LSLIQSDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNF 170
LI+ ++ IIF + E V L+ S + V L +M+
Sbjct: 236 RRLIRGATDLKNAIIFCNRKRE--------------VALLAKSLQRHGFSVGALHGDMDQ 281
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R A+L R+G +LV++D+AARG+D+PE +H++NFD+P DY+HR GRTGR
Sbjct: 282 TARTAALEAFRKGDLPILVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGR--- 338
Query: 231 SDEKWTVTSIITSEE 245
+ T +I+ +
Sbjct: 339 AGRTGTAVTIVAPSD 353
>gi|401400548|ref|XP_003880804.1| dead box polypeptide 27, related [Neospora caninum Liverpool]
gi|325115216|emb|CBZ50771.1| dead box polypeptide 27, related [Neospora caninum Liverpool]
Length = 462
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 122/256 (47%), Gaps = 30/256 (11%)
Query: 13 FKLESVQVLVIDEVDFL----FNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFL 68
F L+SV+VLV+DE D L F+++ QV LL S RQT+ SA++ L
Sbjct: 172 FSLKSVKVLVLDEADRLLSLDFDAALQV-----LLEHVGSPAERQTMLFSATMTTKVSKL 226
Query: 69 HNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFV 128
QK + V + VN+ + S L F++ K+K+ L + + +P S I+F
Sbjct: 227 -----QKASLKKPVKLEVNSKYDVASLLQQHFLLVPFKLKHTHLAAALLHLSPSSVIVF- 280
Query: 129 GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLL 188
+ NA + L + L + L +M R +L + R L
Sbjct: 281 ------TNTCANARTIALFLRHLGFQS------VCLHGKMTQPQRIGALTKFRAAETSCL 328
Query: 189 VSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFV 248
V+T++ +RG+D+P + NFD+P S+ +Y+HR GRT R + T I+T ++
Sbjct: 329 VATEVGSRGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALT---IVTQYDVEA 385
Query: 249 LQRYENELKFKSEELT 264
QR E+ L K +ELT
Sbjct: 386 YQRIEHALGQKLDELT 401
>gi|319783267|ref|YP_004142743.1| DEAD/DEAH box helicase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317169155|gb|ADV12693.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 520
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 124/259 (47%), Gaps = 35/259 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L E+ L V++LVIDE D + + + ++++ RQT+F SA++
Sbjct: 131 GRLLDHRERGKLLLNGVEILVIDEADRMLDMG-FIPDIERICEMIPFT--RQTLFFSATM 187
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTLLS 114
P +FLH V V V+ + + R V G K K +TL +
Sbjct: 188 PPEITKLTEKFLHAP----------VRVEVSKAASAATNITQRLVKSGSKPWDKRETLRN 237
Query: 115 LIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172
LI+++ E + IIF + E S+ L L + D L +M+ +
Sbjct: 238 LIKAEDAELKNAIIFCNRKIEVSE---------LFRSLLKYDF----DAGALHGDMDQRA 284
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSD 232
R L R G LV++D+AARG+D+P+ +H++N+D+P A DY+HR GRTGR S
Sbjct: 285 RMQMLANFRDGKLRYLVASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSG 344
Query: 233 EKWTVTSIITSEELFVLQR 251
+ +T+ + ++ + ++R
Sbjct: 345 KSFTIATKSDTKYIDAIER 363
>gi|194904159|ref|XP_001981012.1| GG23261 [Drosophila erecta]
gi|190652715|gb|EDV49970.1| GG23261 [Drosophila erecta]
Length = 709
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 132/268 (49%), Gaps = 40/268 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L++ ++ + ++ LV+DE D + + + ++K++ +RQT+ SA+
Sbjct: 421 GRLNDLVQANVIDVSTITYLVLDEADRMLDMGFE-PQIRKVMLDIRP--DRQTIMTSATW 477
Query: 62 PQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P R ++ N IQ D+ H ++K + L K K+ T+ S +
Sbjct: 478 PPGVRRLAQSYMKNPIQVCVGSLDLAATH--SVKQVIQLLED------DKEKFNTIKSFV 529
Query: 117 QS-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
++ + IIF G ++ +A + S L F++ G+ D + R
Sbjct: 530 RNMSNTDKIIIFCGRKA----RADDLSSELTLDGFMTQCIHGNRDQI---------DREQ 576
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
++ +++ G ++LV+TD+A+RG+D+ + TH+ N+D PR+ +Y+HR GRTGR + K
Sbjct: 577 AIADIKSGAVHILVATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGR---AGRKG 633
Query: 236 TVTSIITSEE-------LFVLQRYENEL 256
T S IT E+ + +LQ E E+
Sbjct: 634 TSISFITREDWGMAKELIDILQEAEQEV 661
>gi|316934368|ref|YP_004109350.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris DX-1]
gi|315602082|gb|ADU44617.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
DX-1]
Length = 469
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 119/249 (47%), Gaps = 40/249 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL+ RQT+F +A
Sbjct: 131 GRLLDHTERGGLLLTGVEMLVIDEADRMLDMGFIPDIERICKLVPF-----TRQTLFFTA 185
Query: 60 SIPQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P R FLHN + + +K V V + V CG++ K +TL
Sbjct: 186 TMPTEIRRITETFLHNPEKIEVSKPASTAVTVTQSQ----------VPCGREPHEKRETL 235
Query: 113 LSLIQSDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNF 170
LI+ ++ IIF + E V L+ S + V L +M+
Sbjct: 236 RHLIRGATDLKNAIIFCNRKRE--------------VALLARSLQRHGFSVGALHGDMDQ 281
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R A+L R+G +LV++D+AARG+D+PE +H++NFD+P DY+HR GRTGR
Sbjct: 282 TARMAALEAFRKGELPILVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGR 341
Query: 231 SDEKWTVTS 239
+ T+ +
Sbjct: 342 AGTALTIVA 350
>gi|409911469|ref|YP_006889934.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
gi|298505039|gb|ADI83762.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
Length = 446
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 134/274 (48%), Gaps = 43/274 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + L ++VLV+DE D +F+ + ++++L S RQT+ SA++
Sbjct: 129 GRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGF-LPDIRRVLKHLPS--RRQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R L I D V V V + P + H + + + +K LL L++
Sbjct: 186 PIDIRALAQEI-----LVDPVTVQVGNVAPAVTVAHALYPVE-QHLKTPLLLELLRHTDT 239
Query: 122 ESGIIF---------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172
ES +IF +GEQ EK+ Y+ +S L+ ++ N
Sbjct: 240 ESVLIFTRTKHRAKRLGEQLEKA------------------GYRAAS----LQGNLSQNR 277
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSD 232
R A+L R G +LV+TDIAARGID+ + +H+ N+D+P +A Y+HR GRTGR S
Sbjct: 278 RQAALDGFRDGTYQILVATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSG 337
Query: 233 EKWTVTSIITSEELFVLQRYENELKFKSEELTLQ 266
+ +T ++TS++ +++ E L E T+Q
Sbjct: 338 DAFT---LVTSDDGAMVRSIERSLGATIERRTVQ 368
>gi|418402468|ref|ZP_12975980.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
meliloti CCNWSX0020]
gi|359503602|gb|EHK76152.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
meliloti CCNWSX0020]
Length = 499
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKMKYQTLL-SLIQ 117
++P + L + Q + +V AI + RFV GK + + +L LI+
Sbjct: 187 TMPPEIQKLADRFLQNPERLEVARRSSTAI-----TVTQRFVAAHGKDYEKRAVLRELIR 241
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
S ++ IIF + + ++ F S G S V L +M+ SR A
Sbjct: 242 SQEDLKNAIIFCNRKKDVAEL------------FRSLDRHGFS-VGALHGDMDQRSRMAM 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR S +T
Sbjct: 289 LANFKDGNIKLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFT 348
Query: 237 VTS 239
+ +
Sbjct: 349 IVT 351
>gi|417940539|ref|ZP_12583827.1| DEAD/DEAH box helicase [Streptococcus oralis SK313]
gi|343389420|gb|EGV02005.1| DEAD/DEAH box helicase [Streptococcus oralis SK313]
Length = 518
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + A S ++RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLHDIETLILDEADEMLN----MGFLEDIEAIISRVPDSRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|410458021|ref|ZP_11311786.1| ATP-dependent RNA helicase [Bacillus azotoformans LMG 9581]
gi|409931956|gb|EKN68928.1| ATP-dependent RNA helicase [Bacillus azotoformans LMG 9581]
Length = 447
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 123/256 (48%), Gaps = 28/256 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K K+ V+ +V+DEVD + + K +K ++ S+ +RQ +F SA+I
Sbjct: 127 GRINELIDKKKMKMHEVKTVVVDEVDQMV-AQKLTYDVKMVI--QSTLRDRQVLFFSATI 183
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ +Q K + + + + H + + ++ K + L + + D
Sbjct: 184 -------SDVVQDFAKKVMNAPTFIQVERERNNAVDHIYFVSERRDKVEVLRRIYRMDES 236
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
+IF+ + + +D L+ +K + +L N RAA++ +
Sbjct: 237 MKALIFIND--------------SFHIDELAAKFKYKKIPIGVLHSAANKKERAAAIQQF 282
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R G LL++TDIAARG+D+ TH+ + D+P Y+HR+GRTGR + TV S+
Sbjct: 283 RSGKLTLLLATDIAARGMDIQGLTHVIHLDMPEKIEQYIHRSGRTGR---MGAQGTVISL 339
Query: 241 ITSEELFVLQRYENEL 256
+T E L +Y EL
Sbjct: 340 VTPTEEKTLLKYGKEL 355
>gi|294497056|ref|YP_003560756.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
gi|294346993|gb|ADE67322.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
Length = 503
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 125/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L+ V +++DE D + N + ++K+L++ N QT+ SA++
Sbjct: 129 GRMLDHINRRTLRLQDVHTVILDEADEMLNMGF-IEDIEKILSNVPE--NHQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R I +K+ V +P+ + ++ +K K+ L L+ +P
Sbjct: 186 PTPIR----RIAEKFMNEPKVVKVKAKEVTMPNITQY-YLEVQEKRKFDILTRLLDMQSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS--YKGSSDVLLLEEEMNFNSRAASLLE 179
E IIF T VD LS + +G S + ++ + R + L +
Sbjct: 241 ELAIIF--------------GRTKRRVDELSEALNMRGYS-AQGIHGDLTQSKRLSVLRQ 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + +
Sbjct: 286 FKEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKMGAAMT 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L E K K E LT T
Sbjct: 343 FVTPRETGQLHNIERTTKRKMERLTPPT 370
>gi|295689524|ref|YP_003593217.1| DEAD/DEAH box helicase [Caulobacter segnis ATCC 21756]
gi|295431427|gb|ADG10599.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
21756]
Length = 524
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 114/232 (49%), Gaps = 30/232 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L E+ + VQ LV+DE D + + + ++++ + +QT+F SA++
Sbjct: 132 GRLLDHFERGKLLMTGVQFLVVDEADRMLDMG-FIPDIERIF--KMTPPKKQTLFFSATM 188
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P ++FL + ++ + + + ++ + L + K K L +LI
Sbjct: 189 PPEITRLTKQFLRDPVRIEVARPATTNANI-------TQLLVKVPSSDPKAKRLALRALI 241
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAA 175
+ E+GI+F ++E VD ++ S K D + +++ R
Sbjct: 242 EKAQIETGIVFCNRKTE--------------VDIVAKSLKVHGYDAAPIHGDLDQTQRMK 287
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L + R G +LV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 288 TLADFRSGALKILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGR 339
>gi|39996017|ref|NP_951968.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
gi|39982782|gb|AAR34241.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
Length = 447
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 133/274 (48%), Gaps = 43/274 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + L ++VLV+DE D +F+ + ++++L RQT+ SA++
Sbjct: 129 GRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGF-LPDIRRVLKHLPP--RRQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R L I D V V V + P + H + + + +K LL L++
Sbjct: 186 PIDIRTLAQDI-----LVDPVTVQVGTVAPAVTVAHALYPVE-QHLKTPLLLELLRHTDT 239
Query: 122 ESGIIF---------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172
ES +IF +GEQ EK+ Y+ +S L+ ++ N
Sbjct: 240 ESVLIFTRTKHRAKRLGEQLEKA------------------GYRAAS----LQGNLSQNR 277
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSD 232
R A+L R G +LV+TDIAARGID+ + +H+ N+D+P +A Y+HR GRTGR S
Sbjct: 278 RQAALDGFRDGTFQILVATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSG 337
Query: 233 EKWTVTSIITSEELFVLQRYENELKFKSEELTLQ 266
+ +T ++TS++ +++ E L E T+Q
Sbjct: 338 DAFT---LVTSDDGAMVRAIERSLGAPIERRTVQ 368
>gi|418063733|ref|ZP_12701365.1| DEAD/DEAH box helicase domain protein, partial [Methylobacterium
extorquens DSM 13060]
gi|373557184|gb|EHP83654.1| DEAD/DEAH box helicase domain protein, partial [Methylobacterium
extorquens DSM 13060]
Length = 453
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPF-----TRQTLFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTLLSLIQ 117
++P L + + +V A + + R V G + K + L LI+
Sbjct: 186 TMPPEIERLADMFLHNPQRVEVARPASTA-----TTIEQRLVATGAEGHEKRKVLRHLIR 240
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
S + ++GIIF + + ++ L S+ + ++ L +M+ +R A+
Sbjct: 241 SASELQNGIIFCNRKRDVAQ---------LQRSLTSHGFNAAA----LHGDMDQRARMAA 287
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P +H++NFD+P DY+HR GRTGR S + +T
Sbjct: 288 LDGFRSGEVPLLVASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFT 347
Query: 237 VTS 239
+ S
Sbjct: 348 LAS 350
>gi|337269131|ref|YP_004613186.1| DEAD/DEAH box helicase domain-containing protein [Mesorhizobium
opportunistum WSM2075]
gi|336029441|gb|AEH89092.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
WSM2075]
Length = 525
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 124/259 (47%), Gaps = 35/259 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L E+ L V++LVIDE D + + + ++++ RQT+F SA++
Sbjct: 131 GRLLDHRERGKLLLNGVEILVIDEADRMLDMG-FIPDIERICEMIPFT--RQTLFFSATM 187
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTLLS 114
P +FLH V V V+ + + R V G K K +TL +
Sbjct: 188 PPEITKLTEKFLHAP----------VRVEVSKAASAATNIIQRLVKSGSKPWDKRETLRN 237
Query: 115 LIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172
LI+++ E + IIF + E S+ L L + D L +M+ +
Sbjct: 238 LIKAEDAELKNAIIFCNRKVEVSE---------LFRSLLKYDF----DAGALHGDMDQRA 284
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSD 232
R L R G LV++D+AARG+D+P+ +H++N+D+P A DY+HR GRTGR S
Sbjct: 285 RMQMLANFRDGKLRYLVASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSG 344
Query: 233 EKWTVTSIITSEELFVLQR 251
+ +T+ + ++ + ++R
Sbjct: 345 KSFTIATKSDTKYIDAIER 363
>gi|254563310|ref|YP_003070405.1| RNA helicase [Methylobacterium extorquens DM4]
gi|254270588|emb|CAX26591.1| RNA helicase [Methylobacterium extorquens DM4]
Length = 517
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPF-----TRQTLFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTLLSLIQ 117
++P L + + +V A + + R V G + K + L LI+
Sbjct: 186 TMPPEIERLADMFLHNPQRVEVARPASTA-----TTIEQRLVATGAEGHEKRKVLRHLIR 240
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
S + ++GIIF + + ++ L S+ + ++ L +M+ +R A+
Sbjct: 241 SASELQNGIIFCNRKRDVAQ---------LQRSLTSHGFNAAA----LHGDMDQRARMAA 287
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P +H++NFD+P DY+HR GRTGR S + +T
Sbjct: 288 LDGFRSGEVPLLVASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFT 347
Query: 237 VTS 239
+ S
Sbjct: 348 LAS 350
>gi|433447995|ref|ZP_20411254.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
gi|431999627|gb|ELK20547.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
Length = 471
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 129/263 (49%), Gaps = 26/263 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I++ +L++V +V+DE D + N V ++ +L+ + RQT+ SA++
Sbjct: 132 GRVLDHIQRRTLRLQNVHTVVLDEADEMLNMGF-VEDIEAILSHVPT--ERQTLLFSATM 188
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P+ RR +Q ++V V + +P+ + ++ +K K+ TL L+ +
Sbjct: 189 PEPIRRIAERFMQN----PELVRVKAKEMT-VPNIEQY-YIEIQEKKKFDTLTRLLDIQS 242
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F G + + A + L + + G +++ R + L +
Sbjct: 243 PELAIVF-GRTKRRVDELAEALN---LRGYTAEGIHG---------DLSQAKRLSVLRKF 289
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + +
Sbjct: 290 KEGSIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKTGMAITF 346
Query: 241 ITSEELFVLQRYENELKFKSEEL 263
+T E+ L E K K E +
Sbjct: 347 VTPREIGQLHHIEKTTKRKMERM 369
>gi|240140800|ref|YP_002965280.1| RNA helicase [Methylobacterium extorquens AM1]
gi|240010777|gb|ACS42003.1| RNA helicase [Methylobacterium extorquens AM1]
Length = 519
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPF-----TRQTLFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTLLSLIQ 117
++P L + + +V A + + R V G + K + L LI+
Sbjct: 186 TMPPEIERLADMFLHNPQRVEVARPASTA-----TTIEQRLVATGAEGHEKRKVLRHLIR 240
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
S + ++GIIF + + ++ L S+ + ++ L +M+ +R A+
Sbjct: 241 SASELQNGIIFCNRKRDVAQ---------LQRSLTSHGFNAAA----LHGDMDQRARMAA 287
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P +H++NFD+P DY+HR GRTGR S + +T
Sbjct: 288 LDGFRSGEVPLLVASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFT 347
Query: 237 VTS 239
+ S
Sbjct: 348 LAS 350
>gi|163853383|ref|YP_001641426.1| DEAD/DEAH box helicase [Methylobacterium extorquens PA1]
gi|163664988|gb|ABY32355.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
PA1]
Length = 519
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPF-----TRQTLFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTLLSLIQ 117
++P L + + +V A + + R V G + K + L LI+
Sbjct: 186 TMPPEIERLADMFLHNPQRVEVARPASTA-----TTIEQRLVATGAEGHEKRKVLRHLIR 240
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
S + ++GIIF + + ++ L S+ + ++ L +M+ +R A+
Sbjct: 241 SASELQNGIIFCNRKRDVAQ---------LQRSLTSHGFNAAA----LHGDMDQRARMAA 287
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P +H++NFD+P DY+HR GRTGR S + +T
Sbjct: 288 LDGFRSGEVPLLVASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFT 347
Query: 237 VTS 239
+ S
Sbjct: 348 LAS 350
>gi|414158100|ref|ZP_11414394.1| hypothetical protein HMPREF9188_00668 [Streptococcus sp. F0441]
gi|410870645|gb|EKS18602.1| hypothetical protein HMPREF9188_00668 [Streptococcus sp. F0441]
Length = 525
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLHDIETLILDEADEMLN----MGFLEDIEAIISRVPESRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|423070020|ref|ZP_17058796.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0413]
gi|355366341|gb|EHG14059.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0413]
Length = 514
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 116/252 (46%), Gaps = 30/252 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL V++L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHVEILILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K D HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKDPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ PE I+F ++ L F + G +++ R L
Sbjct: 237 EQPELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQGKRLRVLR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 284 DFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT-- 341
Query: 239 SIITSEELFVLQ 250
+ E+ LQ
Sbjct: 342 -FVAPNEMGYLQ 352
>gi|227822081|ref|YP_002826052.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
gi|227341081|gb|ACP25299.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
Length = 501
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 119/243 (48%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRLLDHFERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKMKYQTLL-SLIQ 117
++P + L + Q + +V A + + RFV GK + + +L LI+
Sbjct: 187 TMPPEIQKLADRFLQNPERVEVARPASTA-----NTVTQRFVAAHGKDYEKRAVLRDLIR 241
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ IIF + + ++ F S G S V L +M+ SR A
Sbjct: 242 AQGELKNAIIFCNRKKDVAEL------------FRSLDRHGFS-VGALHGDMDQRSRMAM 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR S +T
Sbjct: 289 LANFKDGNIQLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFT 348
Query: 237 VTS 239
+ +
Sbjct: 349 IVT 351
>gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase [Caulobacter sp. K31]
gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
Length = 678
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 115/232 (49%), Gaps = 30/232 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L E+ + VQ LV+DE D + + + ++++ + +QT+F SA++
Sbjct: 132 GRLLDHFERGKLLMTGVQFLVVDEADRMLDMGF-IPDIERIF--KMTPPKKQTLFFSATM 188
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P ++FL + ++ + ++ + ++ + L + K K L +LI
Sbjct: 189 PPEITRLTKQFLKDPVRIEASRPATTNENI-------TQLMVKVPSSDPKAKRLALRALI 241
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAA 175
+ E+GI+F ++E VD ++ S K D + +++ + R
Sbjct: 242 EKAQIETGIVFCNRKTE--------------VDVVAKSLKSHGFDAAAIHGDLDQSQRTK 287
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L R G +LV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 288 TLAAFRDGSLKILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGR 339
>gi|218532241|ref|YP_002423057.1| DEAD/DEAH box helicase [Methylobacterium extorquens CM4]
gi|218524544|gb|ACK85129.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
CM4]
Length = 519
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPF-----TRQTLFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTLLSLIQ 117
++P L + + +V A + + R V G + K + L LI+
Sbjct: 186 TMPPEIERLADMFLHNPQRVEVARPASTA-----TTIEQRLVATGAEGHEKRKVLRHLIR 240
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
S + ++GIIF + + ++ L S+ + ++ L +M+ +R A+
Sbjct: 241 SASELQNGIIFCNRKRDVAQ---------LQRSLTSHGFNAAA----LHGDMDQRARMAA 287
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P +H++NFD+P DY+HR GRTGR S + +T
Sbjct: 288 LDGFRSGEVPLLVASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFT 347
Query: 237 VTS 239
+ S
Sbjct: 348 LAS 350
>gi|433460289|ref|ZP_20417922.1| DEAD/DEAH box helicase [Halobacillus sp. BAB-2008]
gi|432191745|gb|ELK48677.1| DEAD/DEAH box helicase [Halobacillus sp. BAB-2008]
Length = 470
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 26/265 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + KLESV V+DE D + N + ++ +L + RQT+ SA++
Sbjct: 109 GRLLDHIRRKTIKLESVHTAVLDEADEMLNMG-FIDDIRDILKALPE--ERQTLLFSATM 165
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R + + + V V A + + FV +K K+ TL L+ P
Sbjct: 166 PKEIRDIATTLMNSPEE-----VKVKAKEMTVENIEQFFVEIPEKHKFDTLTRLLDIHDP 220
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
I+F T VD +++ + + ++ R ++L +
Sbjct: 221 SLAIVF--------------GRTKRRVDEVADGLQARGFSAEGIHGDLTQGKRMSTLNKF 266
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G +LV+TD+AARG+D+ + TH+YNFD+P+ Y+HR GRTGR + K S
Sbjct: 267 KRGRIEILVATDVAARGLDISDVTHVYNFDIPQDPESYVHRIGRTGR---AGRKGKSISF 323
Query: 241 ITSEELFVLQRYENELKFKSEELTL 265
+T E L E K K E L +
Sbjct: 324 VTPREKDQLHLIEKITKKKVERLKV 348
>gi|306829117|ref|ZP_07462307.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
6249]
gi|304428203|gb|EFM31293.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
6249]
Length = 525
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 125/256 (48%), Gaps = 30/256 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLHDIETLILDEADEMLN----MGFLEDIEAIISRVPESRQTLLFSAT 183
Query: 61 IPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+P+ +R +++ HV + A + + ++ ++ K+ T+ L+ +
Sbjct: 184 MPEAIKRIGVQFMKEPE------HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVE 237
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 238 QPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 284 DFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT-- 341
Query: 239 SIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 -FVAPNEMGYLQIIEN 356
>gi|196230475|ref|ZP_03129337.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
Ellin428]
gi|196225405|gb|EDY19913.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
Ellin428]
Length = 591
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 127/252 (50%), Gaps = 30/252 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +E+ +L+ V ++++DE D + + + ++ +L + RQTVF SA++
Sbjct: 132 GRVMDHLERKTLRLDQVGMIILDEADRMLDMGFR-DDIETILGQAPA--ERQTVFFSATM 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P N + +K+TK + V+V + A + + + ++ K + L LI
Sbjct: 189 PP----AINQLVKKYTK-EPVNVRIQAQEMTVPAIDQSYYEVDRRSKLEVLCRLIDLQDI 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG---SSDVLLLEEEMNFNSRAASLL 178
+ GIIF +T ++VD LS+ K SSD L +++ + R +
Sbjct: 244 KYGIIFC--------------ATKMMVDELSDHLKARGYSSD--KLHGDISQSMRERVVA 287
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ R+ G LV+TD+AARG+D+ + ++N+DLP+ A DY+HR GRTGR +
Sbjct: 288 KFRKRGFEFLVATDVAARGLDVDDIEVVFNYDLPQDAEDYVHRIGRTGR---AGRSGRAV 344
Query: 239 SIITSEELFVLQ 250
+ + E++ +Q
Sbjct: 345 TFVAGREIWKMQ 356
>gi|49475435|ref|YP_033476.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
gi|49238241|emb|CAF27451.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
Length = 467
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 128/265 (48%), Gaps = 39/265 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + ++ + KL + RQT+F SA
Sbjct: 136 GRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPEIERICKL-----TPFTRQTLFFSA 190
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++ ++FLH+ + + TK+ S + R V G K K L
Sbjct: 191 TMAPEITKLTKQFLHSPVTVEVTKASST----------ASTITQRLVKSGNKAWDKRAVL 240
Query: 113 LSLI--QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LI + D ++ IIF + + S+ LL + +++ V L +M+
Sbjct: 241 RELIHNEGDKLKNAIIFCNRKRDISE---------LLRSLIRHNFS----VGALHGDMDQ 287
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
SR ++L + + LLV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 288 YSRMSTLADFKDNKITLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANR 347
Query: 231 SDEKWTVTSIITSEELFVLQRYENE 255
S + +T+ + + + ++ NE
Sbjct: 348 SGKAFTIVTKTDQKYINAIEEISNE 372
>gi|399888651|ref|ZP_10774528.1| RNA helicase [Clostridium arbusti SL206]
Length = 523
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 130/258 (50%), Gaps = 23/258 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL ++ LV+DE D + N + +++++ + + RQT+ SA++
Sbjct: 131 GRVLDHIRRKTLKLGDLKYLVLDEADEMLNMG-FIDDIEEIINN--TNKERQTLLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + L +K+ K DV + + S + F + + L ++ ++ P
Sbjct: 188 PRPIKKL----AEKYLKKDVKLIQILKKSMTVSKIDQYFYEVHNNARLEALCRILDTEEP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E IIF K+KK + +T+ S Y ++ + +M + R ++L + +
Sbjct: 244 ECAIIFC-----KTKKNVDELVSTMG----SKGY----NIEGMHGDMKQSQRLSTLSKFK 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G L +TD+AARGID+ TH+ N++LP+ Y+HR GRTGR +++ T S+I
Sbjct: 291 HGKLTFLAATDVAARGIDVENITHVINYELPQDTESYVHRIGRTGR---ANKSGTAISLI 347
Query: 242 TSEELFVLQRYENELKFK 259
T +E L++ E ++K K
Sbjct: 348 TKKEFSKLKQIERDIKSK 365
>gi|158424139|ref|YP_001525431.1| helicase [Azorhizobium caulinodans ORS 571]
gi|158331028|dbj|BAF88513.1| helicase [Azorhizobium caulinodans ORS 571]
Length = 582
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 134/277 (48%), Gaps = 47/277 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L +E+ L ++VLVIDE D + + + + KL+ RQT+F SA
Sbjct: 194 GRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPF-----TRQTLFFSA 248
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTL 112
++P +FL N ++ + +K + + + V G++ K +TL
Sbjct: 249 TMPPEIQRLVSQFLSNPVRVEVSKPASANTSITQL----------LVASGREDYEKRETL 298
Query: 113 LSLIQ-SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNF 170
LI+ +D ++GI+F + + V + S K +V+ L +M+
Sbjct: 299 RELIRNADQLQNGIVFCNRKRD--------------VAVVHRSLQKHGFNVVCLHGDMDQ 344
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
++R +L + R G LLV++D+AARG+D+P +H++N+D+P + DY+HR GRTGR
Sbjct: 345 HARTQALDQFRTGEATLLVASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGR--- 401
Query: 231 SDEKWTVTSIITSEELFVLQRYE----NELKFKSEEL 263
+ T ++T ++ L E N + ++ E L
Sbjct: 402 AGRTGTAIMLVTHDDAKSLAAIEKLIGNAIPWQGEPL 438
>gi|188583653|ref|YP_001927098.1| DEAD/DEAH box helicase [Methylobacterium populi BJ001]
gi|179347151|gb|ACB82563.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
BJ001]
Length = 501
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 117/255 (45%), Gaps = 30/255 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPF-----TRQTLFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTLLSLIQ 117
++P L + + +V A + + R V G + K + L LI+
Sbjct: 186 TMPPEIERLADMFLHNPQRVEVARPSSTA-----TTIEQRLVATGAEGHEKRKILRHLIR 240
Query: 118 S-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAA 175
S D ++GIIF + + V L S +V L +M+ +R A
Sbjct: 241 SADELQNGIIFCNRKRD--------------VALLQKSLASHGFNVAALHGDMDQRARTA 286
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+L R G LLV++D+AARG+D+P +H++NFD+P DY+HR GRTGR + +
Sbjct: 287 ALDGFRSGEVPLLVASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRAGHAF 346
Query: 236 TVTSIITSEELFVLQ 250
T+ S L ++
Sbjct: 347 TLASRADERSLAAIE 361
>gi|429760884|ref|ZP_19293342.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica KON]
gi|429176588|gb|EKY17963.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica KON]
Length = 523
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 33/256 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ K E V+++V+DE D + N V + K+L + + QT+ SA++
Sbjct: 130 GRLMDHMDRGSIKFEDVKIVVLDEADEMLNMGF-VDDINKILGAIPE--DHQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R L + T + V + ++ + K+ L L AP
Sbjct: 187 PKAIRELAETYLTEPTLIRMKPTQVTM-----DLIEQYYIEVQDRQKFDVLCRLFDLQAP 241
Query: 122 ESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
E IIF V E +E KK G +++ G +++ R +
Sbjct: 242 ELAIIFTRTKRRVDEVTEALKKRG----------YMAEGIHG---------DLSQQKRDS 282
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+ + R+G +LV+TD+AARG+D+ +H+YN+DLP+ Y HR GRTGR + E +
Sbjct: 283 VIRQFREGTIDILVATDVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAY 342
Query: 236 TVTSIITSEELFVLQR 251
T E L ++R
Sbjct: 343 TFVIPREIEHLHAIER 358
>gi|452974255|gb|EME74076.1| DEAD/DEAH box helicase [Bacillus sonorensis L12]
Length = 487
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 124/271 (45%), Gaps = 34/271 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L++V +V+DE D + N + ++ +L++ + QT+ SA++
Sbjct: 130 GRLIDHINRRTMRLQTVNTVVLDEADEMLNMGF-IEDIESILSNVPE--DHQTLLFSATM 186
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF++N H+ V A + S + ++ ++ K+ TL L+
Sbjct: 187 PAPIKRIAERFMNNP----------EHIKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLL 236
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+PE I+F ++ L + + G ++ R +
Sbjct: 237 DIQSPELAIVF----GRTKRRVDELTEALNLRGYTAEGIHG---------DLTQAKRMVA 283
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + +QG +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +
Sbjct: 284 LRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGM 340
Query: 237 VTSIITSEELFVLQRYENELKFKSEELTLQT 267
+ IT E +L+ E K K + + T
Sbjct: 341 AMTFITPREKDMLRAIEQTTKRKMDRMKAPT 371
>gi|401679335|ref|ZP_10811267.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
gi|400219664|gb|EJO50527.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
Length = 523
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 33/256 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ K E V+++V+DE D + N V + K+L + + QT+ SA++
Sbjct: 130 GRLMDHMDRGSIKFEDVKIVVLDEADEMLNMGF-VDDINKILGAIPE--DHQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R L + T + V + ++ + K+ L L AP
Sbjct: 187 PKAIRELAETYLTEPTLIRMKPTQVTM-----DLIEQYYIEVQDRQKFDVLCRLFDLQAP 241
Query: 122 ESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
E IIF V E +E KK G +++ G +++ R +
Sbjct: 242 ELAIIFTRTKRRVDEVTEALKKRG----------YMAEGIHG---------DLSQQKRDS 282
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+ + R+G +LV+TD+AARG+D+ +H+YN+DLP+ Y HR GRTGR + E +
Sbjct: 283 VIRQFREGTIDILVATDVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAY 342
Query: 236 TVTSIITSEELFVLQR 251
T E L ++R
Sbjct: 343 TFVIPREIEHLHAIER 358
>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
Length = 506
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 128/266 (48%), Gaps = 24/266 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + KL++V L++DE D + N + ++ ++AS + RQT+ SA++
Sbjct: 129 GRLLDHINRRTLKLDNVNTLILDEADEMLNMGF-IEDIQTIMASVP--DTRQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R I +K+ K+ + V + + + + +V ++ K+ L L+ P
Sbjct: 186 PDAIR----RIAEKFMKTPEI-VKIKSKEMTVENIEQFYVKSVEREKFDFLSRLLNVQQP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + + +L+ G +++ R + L + +
Sbjct: 241 ELAIVF-GRTKRRVDELAKALN---IRGYLAEGIHG---------DLSQAKRMSVLKQFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ +H+YNFD+P+ Y+HR GRTGR + +K + +
Sbjct: 288 AGKIDILVATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTGR---AGKKGVAVTFV 344
Query: 242 TSEELFVLQRYENELKFKSEELTLQT 267
T E+ L E K K E L T
Sbjct: 345 TPREMGYLSIVERTTKKKMEALVPPT 370
>gi|303228490|ref|ZP_07315321.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-134-V-Col7a]
gi|302516848|gb|EFL58759.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-134-V-Col7a]
Length = 523
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 33/256 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ K E V+++V+DE D + N V + K+L + + QT+ SA++
Sbjct: 130 GRLMDHMDRGSIKFEDVKIVVLDEADEMLNMGF-VDDINKILGAIPE--DHQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R L + T + V + ++ + K+ L L AP
Sbjct: 187 PKAIRELAETYLTEPTLIRMKPTQVTM-----DLIEQYYIEVQDRQKFDVLCRLFDLQAP 241
Query: 122 ESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
E IIF V E +E KK G +++ G +++ R +
Sbjct: 242 ELAIIFTRTKRRVDEVTEALKKRG----------YMAEGIHG---------DLSQQKRDS 282
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+ + R+G +LV+TD+AARG+D+ +H+YN+DLP+ Y HR GRTGR + E +
Sbjct: 283 VIRQFREGTIDILVATDVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAY 342
Query: 236 TVTSIITSEELFVLQR 251
T E L ++R
Sbjct: 343 TFVIPREIEHLHAIER 358
>gi|218132479|ref|ZP_03461283.1| hypothetical protein BACPEC_00338 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992589|gb|EEC58591.1| DEAD/DEAH box helicase [[Bacteroides] pectinophilus ATCC 43243]
Length = 381
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 123/258 (47%), Gaps = 30/258 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLF--NSSKQVSSLKKLLASYSSCNNRQTVFASA 59
G + +LI + +V+ L++DE D + ++ ++ L++ L Y+ Q + SA
Sbjct: 134 GRILKLIHMKKLSVHNVKTLIVDEADKMLAKDNIDGLTQLRRSLMKYT-----QIIMVSA 188
Query: 60 SIPQHRRFLHNCIQQKWT-KSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
S+ + IQ S+ V +++ A K +P + H F+I ++ + +TL S+I +
Sbjct: 189 SMDKK------SIQAASAFNSEPVILNIKADKAIPGTIRHMFIISDRRNRIETLRSVINA 242
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+P+ GIIF + + D L GS+D L R ++
Sbjct: 243 LSPKKGIIFANTAYDLEETVNKLVYHHYKADMLY----GSNDKL---------QRKKAVE 289
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
E R G LVSTD+A+RG+ + ++N +LP ++ +Y HRAGR GR +
Sbjct: 290 EFRSGKINFLVSTDLASRGLQIDGIDAVFNLNLPENSTEYQHRAGRCGRNGM---QGVCV 346
Query: 239 SIITSEELFVLQRYENEL 256
S+IT E+ ++ Y+ E
Sbjct: 347 SVITPNEVDKIKAYQKEF 364
>gi|89100060|ref|ZP_01172930.1| hypothetical protein B14911_17825 [Bacillus sp. NRRL B-14911]
gi|89085294|gb|EAR64425.1| hypothetical protein B14911_17825 [Bacillus sp. NRRL B-14911]
Length = 381
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 130/261 (49%), Gaps = 25/261 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI++ K+ V+ +V+DE D L + + ++K +L S + +RQ F SA++
Sbjct: 131 GRMLELIKQKKLKMHEVKTVVLDEGDQLL-VPEHLETVKTILKS--TLADRQLAFFSATL 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + Q+ + +D + V + +PS + H + C ++ K + LL I
Sbjct: 188 PEST----AKVAQELS-ADAELIRVGKEEAIPSDVDHIYFACEQRDKIK-LLEKISRVKD 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
G+ FV K GN + +DF KG +L +++ R L R
Sbjct: 242 IKGLAFV-------KDIGNLAVLSEKLDF-----KGVK-AGILHSDLDKMDRQKHLKNFR 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G LL +TD+AARG+D+ TH+ ++D P+ Y+HR+GRTGR S TV S++
Sbjct: 289 EGKSSLLFATDVAARGLDIQGVTHVVHYDFPKDIKQYVHRSGRTGRFGAS---GTVISLV 345
Query: 242 TSEELFVLQRYENELKFKSEE 262
T E L+++ EL E+
Sbjct: 346 TEREERELKKFCQELGITPEK 366
>gi|303231880|ref|ZP_07318591.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-049-V-Sch6]
gi|302513487|gb|EFL55518.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-049-V-Sch6]
Length = 523
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 33/256 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ K E V+++V+DE D + N V + K+L + + QT+ SA++
Sbjct: 130 GRLMDHMDRGSIKFEDVKIVVLDEADEMLNMGF-VDDINKILGAIPE--DHQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R L + T + V + ++ + K+ L L AP
Sbjct: 187 PKTIRELAETYLTEPTLIRMKPTQVTM-----DLIEQYYIEVQDRQKFDVLCRLFDLQAP 241
Query: 122 ESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
E IIF V E +E KK G +++ G +++ R +
Sbjct: 242 ELAIIFTRTKRRVDEVTEALKKRG----------YMAEGIHG---------DLSQQKRDS 282
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+ + R+G +LV+TD+AARG+D+ +H+YN+DLP+ Y HR GRTGR + E +
Sbjct: 283 VIRQFREGTIDILVATDVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAY 342
Query: 236 TVTSIITSEELFVLQR 251
T E L ++R
Sbjct: 343 TFVIPREIEHLHAIER 358
>gi|157960630|ref|YP_001500664.1| ATP-dependent RNA helicase SrmB [Shewanella pealeana ATCC 700345]
gi|157845630|gb|ABV86129.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 411
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 124/258 (48%), Gaps = 32/258 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNRQTVFASA 59
G L + ++K F E V+VL+IDE D + + S V S+ + S +QT+ SA
Sbjct: 135 GRLMEYLDKGHFNAEEVEVLIIDEADRMLDMGFSAVVESI-----AIESVGRKQTMLFSA 189
Query: 60 SIPQHR--RFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSLI 116
++ RF HN + ++ V + A + + +H + K K+ L +L+
Sbjct: 190 TLEGSDVGRFSHNLL------TNPVKLEAEAPRSEKAKIHQWIHLADDKAHKFALLCALL 243
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ + + I+FV + + G + F+ +M +R +
Sbjct: 244 KQEEVQRTIVFVKTRESVASLEGLLQKEGITCAFMRG-------------DMEQKARFQA 290
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L +G +L++TD+AARGID+ + TH+ NFD+PRSA Y+HR GRTGR + K T
Sbjct: 291 LGRFTKGEVNILLATDVAARGIDIDDITHVINFDMPRSADTYVHRIGRTGR---AGAKGT 347
Query: 237 VTSIITSEELFVLQRYEN 254
S++ + ++ V+ + E
Sbjct: 348 AISLVEAHDIRVVGKIER 365
>gi|389818136|ref|ZP_10208577.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
gi|388464068|gb|EIM06404.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
Length = 507
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 128/266 (48%), Gaps = 24/266 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + KL++V L++DE D + N + ++ ++AS + RQT+ SA++
Sbjct: 129 GRLLDHINRRTLKLDNVNTLILDEADEMLNMGF-IEDIQTIMASVP--DTRQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R I +K+ K+ + V + + + + +V ++ K+ L L+ P
Sbjct: 186 PDAIR----RIAEKFMKTPEI-VKIKSKEMTVENIEQFYVKSVEREKFDFLSRLLNVQQP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + + +L+ G +++ R + L + +
Sbjct: 241 ELAIVF-GRTKRRVDELAKALN---IRGYLAEGIHG---------DLSQAKRMSVLKQFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ +H+YNFD+P+ Y+HR GRTGR + +K + +
Sbjct: 288 AGKIDILVATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTGR---AGKKGVAVTFV 344
Query: 242 TSEELFVLQRYENELKFKSEELTLQT 267
T E+ L E K K E L T
Sbjct: 345 TPREMGYLGIVERTTKKKMEALVPPT 370
>gi|329889383|ref|ZP_08267726.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
gi|328844684|gb|EGF94248.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
Length = 490
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 117/238 (49%), Gaps = 42/238 (17%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L L ++ L V+++V+DE D + + + + KL + RQT+F SA
Sbjct: 132 GRLLDLFDRGKMLLTGVELMVVDEADRMLDMGFIPDIERIFKL-----TPPRRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNC----IQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQ 110
++P ++FL + + + T +D + H+ LPS K K
Sbjct: 187 TMPPEITRLTQQFLKDPTRIEVARPATTADTITQHITR---LPSS--------DPKAKRT 235
Query: 111 TLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMN 169
L +L++ ++GI+F +SE VD ++ S + + + +++
Sbjct: 236 ALRALVERGDVQNGIVFCNRKSE--------------VDIVAKSLQVHGFNAAPIHGDLD 281
Query: 170 FNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ R +L + R G LLV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 282 QSLRMKTLSDFRSGELKLLVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGR 339
>gi|289167533|ref|YP_003445802.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
DEAD-box family [Streptococcus mitis B6]
gi|288907100|emb|CBJ21934.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
DEAD-box family [Streptococcus mitis B6]
Length = 521
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ + L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIGTLILDEADEMLN----MGFLEDIEAIISRVPESRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 --FVSPNEMGYLQIIEN 356
>gi|384049181|ref|YP_005497198.1| DEAD/DEAH box helicase [Bacillus megaterium WSH-002]
gi|345446872|gb|AEN91889.1| DEAD/DEAH box helicase domain protein [Bacillus megaterium WSH-002]
Length = 484
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 125/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L+ V +++DE D + N + ++K+L++ N QT+ SA++
Sbjct: 110 GRMLDHINRRTLRLQDVHTVILDEADEMLNMGF-IEDIEKILSNVPE--NHQTLLFSATM 166
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R I +K+ V +P+ + ++ +K K+ L L+ +P
Sbjct: 167 PTPIR----RIAEKFMNEPKVVKVKAKEVTMPNITQY-YLEVQEKRKFDILTRLLDMQSP 221
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS--YKGSSDVLLLEEEMNFNSRAASLLE 179
E IIF T VD LS + +G S + ++ + R + L +
Sbjct: 222 ELAIIF--------------GRTKRRVDELSEALNMRGYS-AQGIHGDLTQSKRLSVLRQ 266
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + +
Sbjct: 267 FKEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKMGAAMT 323
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L E K K E +T T
Sbjct: 324 FVTPRETGQLHNIERTTKRKMERMTPPT 351
>gi|417859722|ref|ZP_12504778.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
gi|338822786|gb|EGP56754.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
Length = 501
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 29/244 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 132 GRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P + L + Q T+ +V A + R V K K L L++
Sbjct: 187 TMPPEIQKLADRFLQNPTRIEVAKPSSTA-----KTVTQRIVAAHNKDYEKRAVLRDLVR 241
Query: 118 SDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
++ E + IIF + + + D + + V L +M+ SR
Sbjct: 242 AEEAELKNAIIFCNRKKD-------------VADLFRSLDRHGFSVGALHGDMDQRSRTT 288
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L R G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR S + +
Sbjct: 289 MLQNFRDGNLTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAF 348
Query: 236 TVTS 239
T+ +
Sbjct: 349 TLVT 352
>gi|357418532|ref|YP_004931552.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
gi|355336110|gb|AER57511.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
Length = 456
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 120/254 (47%), Gaps = 33/254 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +E+ L ++VLV+DE D + + + S+K++LA NRQT+ SA+
Sbjct: 135 GRLIDHLERRSVDLSGIEVLVLDEADRMLDMGF-LPSIKRILAKLPK-QNRQTLLFSATF 192
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
+ R F+H+ ++ + T + VH ++ HR K LL L+
Sbjct: 193 DDNIKLLAREFMHDPLEIQATPKNTVHENIT----------HRVHPVDSARKRDLLLHLL 242
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
D+ E ++F K+K + L FL K + + + R +
Sbjct: 243 AEDSREQTLVFA-----KTKHGSDK-----LALFLE---KAGIQTAAIHGNKSQSQRLRA 289
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + + G +LV+TDIAARGID+ + + NFDLP A DY+HR GRTGR +
Sbjct: 290 LRDFKAGKVTVLVATDIAARGIDIDQLPKVINFDLPMVAEDYVHRIGRTGR---NGSTGQ 346
Query: 237 VTSIITSEELFVLQ 250
S+++ E+ +L+
Sbjct: 347 AVSLVSQEDAKLLR 360
>gi|300856701|ref|YP_003781685.1| RNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528]
Length = 525
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 128/253 (50%), Gaps = 25/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I++ L +++ L++DE D + + + ++ ++ + +S +RQT+ SA++
Sbjct: 131 GRILDHIKRKTLDLSNIEFLILDEADEMLDMG-FIEDIENIIKATNS--DRQTLLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L + ++ KS++ + + + +K ++++L ++ D P
Sbjct: 188 PDQIKKLSS----RYMKSNIKSIKIAKNTLTVDKTKQYYYEIKQKDRFESLCRILDVDEP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
S IIF K+K+ VD L + +V + +M N R +L +
Sbjct: 244 SSAIIFC-----KTKRG---------VDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKF 289
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G LV+TD+AARGID+ +H+ N+DLP+ Y+HR GRTGR ++++ S+
Sbjct: 290 KEGSLEFLVATDVAARGIDVENVSHVINYDLPQDTESYVHRIGRTGR---ANKEGIAYSL 346
Query: 241 ITSEELFVLQRYE 253
+T E +L++ E
Sbjct: 347 VTPREYILLKQIE 359
>gi|374580313|ref|ZP_09653407.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
gi|374416395|gb|EHQ88830.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
Length = 386
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 129/269 (47%), Gaps = 36/269 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K ++V+ +V+DE D L + + S +K ++ + + + Q + SA++
Sbjct: 131 GRILELIQKKKIVAQTVKTIVLDEADRLLDET-NASLVKSVIKT--TLSRTQLLLFSATL 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + + +V+ V + + + H F ++ K + L LI+ P
Sbjct: 188 PPA---TYQKASEVLKTPEVIRVTDKIV--IAPTVEHMFFAAEQRDKIEVLRKLIRMLVP 242
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEE-----MNFNSRAAS 176
+IF+ + E K +V+ L+ Y G LE E N + R +
Sbjct: 243 TRALIFINKSEEIEK----------MVEKLN--YHG------LEAEGIYGGANKSERKKA 284
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ + R G LLV++D+AARG+D+ TH++N DLP YLHR GRTGR + K
Sbjct: 285 MDDFRSGRSTLLVASDLAARGLDIKGITHVFNLDLPEDPQLYLHRVGRTGR---AGNKGI 341
Query: 237 VTSIITSEELFVLQRYEN--ELKFKSEEL 263
SI+ S+E L+R E E++ +E+
Sbjct: 342 AISIVNSKEALYLKRLERAYEIRINPKEM 370
>gi|418299490|ref|ZP_12911323.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens CCNWGS0286]
gi|355534955|gb|EHH04251.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens CCNWGS0286]
Length = 501
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 29/244 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 132 GRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P + L + Q T+ +V A + R V K K L L++
Sbjct: 187 TMPPEIQKLADRFLQNPTRIEVAKPSSTA-----KTVTQRIVAAHNKDYEKRAVLRDLVR 241
Query: 118 SDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
++ E + IIF + + + D + + V L +M+ SR
Sbjct: 242 AEEAELKNAIIFCNRKKD-------------VADLFRSLDRHGFSVGALHGDMDQRSRTT 288
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L R G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR S + +
Sbjct: 289 MLQNFRDGNLSLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAF 348
Query: 236 TVTS 239
T+ +
Sbjct: 349 TLVT 352
>gi|433775542|ref|YP_007306009.1| DNA/RNA helicase, superfamily II [Mesorhizobium australicum
WSM2073]
gi|433667557|gb|AGB46633.1| DNA/RNA helicase, superfamily II [Mesorhizobium australicum
WSM2073]
Length = 527
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 124/259 (47%), Gaps = 35/259 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L E+ L V++LVIDE D + + + ++++ RQT+F SA++
Sbjct: 142 GRLLDHRERGKLLLNGVEILVIDEADRMLDMG-FIPDIERICEMIPFT--RQTLFFSATM 198
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTLLS 114
P +FLH V V V+ + + R V G K K +TL +
Sbjct: 199 PPEITKLTEKFLHAP----------VRVEVSKAASAATNIIQRLVKSGSKPWDKRETLRN 248
Query: 115 LIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172
LI+++ E + IIF + E S+ L L + D L +M+ +
Sbjct: 249 LIKAEDAELKNAIIFCNRKIEVSE---------LFRSLLKYDF----DAGALHGDMDQRA 295
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSD 232
R L R G LV++D+AARG+D+P+ +H++N+D+P A DY+HR GRTGR S
Sbjct: 296 RMQMLANFRDGKLRYLVASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSG 355
Query: 233 EKWTVTSIITSEELFVLQR 251
+ +T+ + ++ + ++R
Sbjct: 356 KSFTIATKSDTKYIDAIER 374
>gi|300023857|ref|YP_003756468.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
gi|299525678|gb|ADJ24147.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 540
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 28/218 (12%)
Query: 15 LESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCI 72
L V++LVIDE D + + + + KLL RQT+F SA++P L +
Sbjct: 147 LMGVEILVIDEADRMLDMGFIPDIEKICKLLPP-----RRQTLFFSATMPPEITRLVDQF 201
Query: 73 QQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK---MKYQTLLSLIQSDAPESGIIFVG 129
+ T+ +V A + RFV C K + L LI+ ++ IIF
Sbjct: 202 LKDPTRIEVAKPATTA-----KTITQRFVYCQNGEDWAKREMLRELIRDGNVKNAIIFCN 256
Query: 130 EQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLV 189
+ + +L LS K + L +M+ SR +L + R G LL
Sbjct: 257 RKRD----------VAVLYKSLS---KHGFNAGELHGDMDQTSRTETLDKFRNGEIMLLA 303
Query: 190 STDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++D+AARG+D+P+ +H++NFDLP +A DY+HR GRTGR
Sbjct: 304 ASDVAARGLDIPDVSHVFNFDLPWAADDYVHRIGRTGR 341
>gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
Length = 535
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 120/253 (47%), Gaps = 40/253 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + KLE VQ +V+DE D + + + + S+ K + RQT+ SA
Sbjct: 129 GRLLDHINRKTIKLEDVQTVVLDEADEMLDMGFMEDIQSILKQVP-----EERQTLLFSA 183
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + + QQ + HV V + + + + ++ K++ L L+ +
Sbjct: 184 TMPPN---IQKLAQQFLKNPE--HVAVISKQVTAPTIQQNYFEVHERQKFEALCRLLDME 238
Query: 120 APESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
+PE IIF V E SE +K G + ++ G +++ N R
Sbjct: 239 SPELAIIFGRTKRRVDELSEGLQKRG----------YTADGLHG---------DLSQNQR 279
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ + R G +LV+TD+AARG+D+ TH+ NFDLP+ Y+HR GRTGR + +
Sbjct: 280 DNVMRKFRDGSIDVLVATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGR---AGK 336
Query: 234 KWTVTSIITSEEL 246
+ + S +T E+
Sbjct: 337 EGSAYSFVTPREV 349
>gi|121601761|ref|YP_989161.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
bacilliformis KC583]
gi|421760972|ref|ZP_16197779.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
bacilliformis INS]
gi|120613938|gb|ABM44539.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
protein [Bartonella bacilliformis KC583]
gi|411173805|gb|EKS43846.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
bacilliformis INS]
Length = 471
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 112/238 (47%), Gaps = 25/238 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L L+ + L + LV+DE D + + V + KLL C QT SA
Sbjct: 149 GRLMDLVREKFVDLSRSRFLVLDEADRMLDMGFINDVRRIAKLL-----CKEHQTALFSA 203
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P+ + L N + + K +VV A++ + + K K L L+ +
Sbjct: 204 TMPKEIKELANGLLNEPVKIEVVPQGTTAVE-----ITQKLYCVPKNEKRNILNRLLVNP 258
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
S I+F+ ++K +A + +L N V + + N+R ++L
Sbjct: 259 DLISVIVFI-----RTKHGADA-----ITRYLKNM---GHAVATIHGNKSQNARQSALKA 305
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
R+G +LV+TDIAARGID+P +H+ N+DLP A Y+HR GRTGR S + T+
Sbjct: 306 FREGSVKVLVATDIAARGIDIPGVSHVINYDLPEDAESYVHRIGRTGRNGASGDAITL 363
>gi|421861510|ref|ZP_16293512.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
gi|410828936|dbj|GAC43949.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
Length = 517
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 120/253 (47%), Gaps = 40/253 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + +L VQ +V+DE D + + + ++S+ L+ RQT+ SA
Sbjct: 132 GRLLDHINRKTIRLNDVQTVVLDEADEMLDMGFMEDITSILSLVPE-----ERQTMLFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + + L N + V+ V+A PL + ++ +++K+ L L+ +
Sbjct: 187 TMPPNIQKLANQFLRDPEHVSVIPKQVSA--PL---IEQAYIEVPERVKFDALSRLLDME 241
Query: 120 APESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
+PE I+F V E SE +K G + ++ G +++ N R
Sbjct: 242 SPELAIVFGRTKRRVDELSEALQKRG----------YSADGLHG---------DLSQNQR 282
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ + R G +LV+TD+AARG+D+ TH+ NFDLP+ Y+HR GRTGR
Sbjct: 283 DNVMRKFRDGSIDVLVATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGS 342
Query: 234 KWTVTSIITSEEL 246
W S +T E+
Sbjct: 343 AW---SFVTPREI 352
>gi|398309564|ref|ZP_10513038.1| DEAD/DEAH box helicase [Bacillus mojavensis RO-H-1]
Length = 494
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S QT+ SA++
Sbjct: 130 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPS--EHQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 187 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 242 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 289 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 345
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E+ +L+ E K K + +
Sbjct: 346 TPREISMLRAIEQTTKRKMDRM 367
>gi|311071129|ref|YP_003976052.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
gi|419823024|ref|ZP_14346587.1| ATP-dependent RNA helicase [Bacillus atrophaeus C89]
gi|310871646|gb|ADP35121.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
gi|388472831|gb|EIM09591.1| ATP-dependent RNA helicase [Bacillus atrophaeus C89]
Length = 497
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 127/268 (47%), Gaps = 36/268 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 130 GRLLDHINRRTLRLNNVNTVVMDEADEMLNMGF-IEDIESILSNVPSEH--QTLLFSATM 186
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+ N HV V A + S + ++ ++ K+ TL L+
Sbjct: 187 PAPIKRIAERFMTNP----------EHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLL 236
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+PE I+F ++K+ + S L L + + G ++ R
Sbjct: 237 DIQSPELAIVF-----GRTKRRVDELSEALNLRGYTAEGIHG---------DLTQAKRMV 282
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+L + +QG +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +
Sbjct: 283 ALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTG 339
Query: 236 TVTSIITSEELFVLQRYENELKFKSEEL 263
+ IT E +L+ E K K + +
Sbjct: 340 MAMTFITPREKDMLRAIEQTTKRKMDRM 367
>gi|357024408|ref|ZP_09086560.1| ATP-dependent RNA helicase [Mesorhizobium amorphae CCNWGS0123]
gi|355543640|gb|EHH12764.1| ATP-dependent RNA helicase [Mesorhizobium amorphae CCNWGS0123]
Length = 514
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 124/259 (47%), Gaps = 35/259 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L E+ L V++LVIDE D + + + ++++ RQT+F SA++
Sbjct: 131 GRLLDHRERGKLLLNGVEILVIDEADRMLDMG-FIPDIERICEMIPFT--RQTLFFSATM 187
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTLLS 114
P +FLH V V V+ + + R V G K K +TL +
Sbjct: 188 PPEITKLTEKFLHAP----------VRVEVSKAASTATSIIQRLVKSGSKPWDKRETLRN 237
Query: 115 LIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172
L++++ E + IIF + E S+ L L + D L +M+ +
Sbjct: 238 LMKAEDAELKNAIIFCNRKVEVSE---------LFRSLLKYDF----DAGALHGDMDQRA 284
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSD 232
R L R G LV++D+AARG+D+P+ +H++N+D+P A DY+HR GRTGR S
Sbjct: 285 RMQMLANFRDGKLRYLVASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSG 344
Query: 233 EKWTVTSIITSEELFVLQR 251
+ +T+ + ++ + ++R
Sbjct: 345 KSFTIATKSDTKYIDAIER 363
>gi|56965701|ref|YP_177435.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
gi|56911947|dbj|BAD66474.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
Length = 493
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 20/226 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + +LES++ +V+DE D + N + ++ +LA + RQT+ SA++
Sbjct: 129 GRLLDHMRRKTIRLESIETVVLDEADEMLNMGF-IEDIETILAE-TPQETRQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ L + + T+ + V A + + +F+ ++ K+ L LI + P
Sbjct: 187 PKRMESLASKFMKNPTR-----IAVKAKEVTMENIAQQFIEVHEREKFDVLCRLIDLETP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I+F G + + A + Y+ L ++N R + L + +
Sbjct: 242 DLSIVF-GRTKRRVDELAEA--------LIKRGYRAEG----LHGDLNQAKRNSVLRKFK 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+G +LV+TD+AARG+D+ TH++NFDLP+ Y+HR GRTGR
Sbjct: 289 EGLIDVLVATDVAARGLDISGVTHVFNFDLPQDPESYVHRIGRTGR 334
>gi|418966288|ref|ZP_13518034.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp.
constellatus SK53]
gi|383340413|gb|EID18712.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp.
constellatus SK53]
Length = 514
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 119/257 (46%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL V+ L++DE D + N + L+ + + S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHVETLILDEADEMLN----MGFLEDIESIISRVPEDRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I+Q K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKQIGVKFMKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASL 177
+ PE I+F T VD L+ K + +++ R L
Sbjct: 237 EQPELSIVF--------------GRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|358464311|ref|ZP_09174276.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 058 str. F0407]
gi|357067077|gb|EHI77207.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 058 str. F0407]
Length = 524
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 125/257 (48%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLHDIETLILDEADEMLN----MGFLEDIEAIISRVPESRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 237 EQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|340620246|ref|YP_004738699.1| DEAD/DEAH box helicase [Zobellia galactanivorans]
gi|339735043|emb|CAZ98420.1| DEAD/DEAH RNA helicase [Zobellia galactanivorans]
Length = 443
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 130/268 (48%), Gaps = 30/268 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSS--CNNRQTVFASA 59
G L LI++ L+ ++ LV+DE D + V++LK L + + +R+T+ +A
Sbjct: 132 GRLIDLIQRKAVSLKKLRYLVLDEAD------EMVTALKTDLDTLDAEMPKSRRTLLFTA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + L Q + VVH+ + + + H++++ K + LL + S
Sbjct: 186 TMPGTVKQL----VQNYMSKHVVHLEADMAQMGHQGIDHKYMVVEPIEKLEVLLHFLNSK 241
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
E GIIF K+K A N + L ++ F S S GS + R +
Sbjct: 242 EGERGIIFC-----KTKAAVNKLAKKLAINKFSSGSIHGS---------LTQGIRDRIMG 287
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ R+G +LV+TD+AARGID+ E +++ N+ LP + Y+HR+GRT R + K
Sbjct: 288 QFREGFIDILVATDLAARGIDVKEISYVVNYHLPDTYEAYVHRSGRTAR---AGAKGLSL 344
Query: 239 SIITSEELFVLQRYENELKFKSEELTLQ 266
+II EE + +E EL EL Q
Sbjct: 345 TIIQEEERKDIPEFEKELGLVFNELKKQ 372
>gi|386288620|ref|ZP_10065760.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium BDW918]
gi|385278175|gb|EIF42147.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium BDW918]
Length = 447
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 121/260 (46%), Gaps = 26/260 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + L+ +++LVIDE D + + + +K+++ + S N+RQT+ SA+
Sbjct: 200 GRLLDFEGRKDLYLDQIEILVIDEADRMLDMGF-IPQVKRIVRATPSTNHRQTLLFSAT- 257
Query: 62 PQHRRFLHNCIQ--QKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
F + ++ ++WTK + V + + + + + + KY+ LL++++ +
Sbjct: 258 -----FTDDIMRLTEQWTK-EPVKIEIEPESVATDTVDQKVYLVESQDKYRLLLNIVREE 311
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
S IIFV + E + K +L E+ N R+ +L +
Sbjct: 312 HATSVIIFVNRRDETRR-------------LFEKMQKAGIRCGILSGEIPQNKRSRTLQQ 358
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G LV+TD+A RGI + +H+ N+ LP A DY+HR GRTGR + T S
Sbjct: 359 FKDGEIDCLVATDVAGRGIHVNGVSHVINYVLPEDAEDYVHRIGRTGR---AGATGTSIS 415
Query: 240 IITSEELFVLQRYENELKFK 259
++ F+L E L K
Sbjct: 416 FACEDDAFLLPNIEEALGMK 435
>gi|221065934|ref|ZP_03542039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
gi|220710957|gb|EED66325.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
Length = 430
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 112/240 (46%), Gaps = 40/240 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+E + +L +VQ LV+DE D L + L ++LA + RQT+ SA+
Sbjct: 137 GRLLDLVENNAVRLNTVQHLVLDEADRLLDQGF-AEELNRVLALLPA--KRQTLLFSATF 193
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPL-----PSCLHHRFVICGKKMKYQT 111
PQ+ R LH D V V V+A + P + R + + Q
Sbjct: 194 PQNVEALAARLLH----------DPVRVQVDADQAAEHSASPENISQRAIAVDSNRRTQL 243
Query: 112 LLSLIQS--DAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEE 167
L L++ + PE ++FV ++ + +L D L YK +
Sbjct: 244 LRQLVKQGENQPEWERALVFVAKRH----------TAEMLADKL---YKAGIYATTFHGD 290
Query: 168 MNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
M+ +R L + + LL++TD+AARGID+ + + N+DLPRS DY+HR GRTGR
Sbjct: 291 MSQGARKEVLDQFKAKRWQLLITTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGR 350
>gi|429843833|gb|AGA16734.1| Vasa protein [Kryptolebias marmoratus]
Length = 641
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 114/237 (48%), Gaps = 38/237 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I K L ++ LV+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 337 GRLLDVIGKGKIGLSKLRYLVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 395
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + + + + K+D + + V + S + FV K K + LL ++++
Sbjct: 396 TYPEDIQRMAS----DFLKTDYLFLAVGVVGGACSDVEQTFVQVAKFAKREQLLDILKTT 451
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS------- 172
E ++FV T + DF++ L +E++ S
Sbjct: 452 GSERTMVFV--------------ETKRMADFIA--------AFLCQEKVPTTSIHGDREQ 489
Query: 173 --RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R +L + R G +LV+T +AARG+D+P+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 490 REREQALTDFRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGR 546
>gi|225155423|ref|ZP_03723915.1| Superfamily II DNA and RNA helicase-like protein [Diplosphaera
colitermitum TAV2]
gi|224803879|gb|EEG22110.1| Superfamily II DNA and RNA helicase-like protein [Diplosphaera
colitermitum TAV2]
Length = 536
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 118/254 (46%), Gaps = 23/254 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L IE+ L V++LV+DEVD + + + +K+++ RQT+F SA++
Sbjct: 260 GRLLDHIEQGTMTLADVEILVLDEVDRMLDMGF-LPDVKRIVQQCPQA--RQTLFFSATL 316
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L + W D V + + + + H F K+ L+ L+
Sbjct: 317 PPELAQLAS-----WALRDPVEIKIGQRRSPAETISHAFYPVVASQKFDLLIDLLSRTEF 371
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRAASLLEV 180
+S IIF T + D +++ + V ++ + N R +L
Sbjct: 372 KSVIIFT--------------RTKMGADRIAHRLQREGHTVGVIHSDRNQRERVEALEGF 417
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G +LV+TDIAARG+D+ +H+ N+D+P + DY+HR GRTGR S + +T+ +
Sbjct: 418 KSGKFEVLVATDIAARGLDIAGVSHVINYDVPENPEDYVHRIGRTGRANASGDAFTLVTE 477
Query: 241 ITSEELFVLQRYEN 254
+ ++RY N
Sbjct: 478 DDVRDARSIERYIN 491
>gi|312867114|ref|ZP_07727324.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
parasanguinis F0405]
gi|311097243|gb|EFQ55477.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
parasanguinis F0405]
Length = 536
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 125/256 (48%), Gaps = 30/256 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDHIETLILDEADEMLN----MGFLEDIEAIISRVPETRQTLLFSAT 183
Query: 61 IPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+P+ +R +++ HV + A + + ++ + K+ T+ L+ +
Sbjct: 184 MPEAIKRIGVQFMKEPE------HVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVE 237
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 238 QPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + T
Sbjct: 284 DFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSIT-- 341
Query: 239 SIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 -FVSPNEMGYLQIIEN 356
>gi|452966944|gb|EME71951.1| superfamily II DNA/RNA helicase [Magnetospirillum sp. SO-1]
Length = 572
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 47/251 (18%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVD------FLFNSSKQVSSLKKLLASYSSCNNRQTV 55
G L + E+ L V+VLVIDE D F+ + K V L K+ RQT+
Sbjct: 148 GRLLDMFERGRILLNDVKVLVIDEADRMLDMGFIPDVEKIVGLLPKI---------RQTL 198
Query: 56 FASASI-PQHRR----FLHNCIQQKW-TKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKY 109
F SA++ P+ RR FL N + K T + V A+ + + K
Sbjct: 199 FFSATMGPEIRRLADAFLMNPKEVKVSTGASAATTVVQAM-----------AVVEEIDKR 247
Query: 110 QTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEM 168
+TL LI+ + ++ IF + + VD L S K DV+ L +M
Sbjct: 248 ETLRHLIRIEEVKNAFIFCNRKRD--------------VDVLFRSLKKHGFDVVQLHGDM 293
Query: 169 NFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRK 228
++R +L + ++G L+V +D+AARGID+ +H++NFD+P A DY+HR GRTGR
Sbjct: 294 AQSARGETLEKFKKGEARLMVCSDVAARGIDISAVSHVFNFDVPIHAEDYVHRIGRTGRA 353
Query: 229 PFSDEKWTVTS 239
+T+ S
Sbjct: 354 GMEGHAFTIAS 364
>gi|254442945|ref|ZP_05056421.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
DG1235]
gi|198257253|gb|EDY81561.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
DG1235]
Length = 436
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 133/267 (49%), Gaps = 32/267 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLF--NSSKQVSSLKKLLASYSSCNNRQTVFASA 59
G L L E+ L+ V++LV+DE D L +++++++ ++L RQ + SA
Sbjct: 133 GRLIDLAERRSVVLDEVEMLVLDEADRLLALGFAEELNTILEML-----PEGRQNLLFSA 187
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAI-KPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+ PQ+ L N + + D V + + A +P+ S + G + L L+++
Sbjct: 188 TFPQNVVSLANALLK-----DPVKIELEAASRPVESIAQRAIEVDGNS-RTGLLRHLLET 241
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ E ++FVG + ++A N + V + K + L M+ + RA SL
Sbjct: 242 EGWERVLVFVGSK----RRAEN-----VTVKLQKHGIK----AVALHGNMSQDKRARSLE 288
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+Q +L++TD+AARGID+ + N+DLPRSA DY+HR GRTGR + E
Sbjct: 289 RFKQSKVRVLMATDVAARGIDIAGLPCVVNYDLPRSAADYVHRIGRTGR---AGESGLAV 345
Query: 239 SIITSEEL--FVLQRYENELKFKSEEL 263
+ IT ++ F L +N L+ + E L
Sbjct: 346 NFITDDKDAHFRLIEKKNGLRLERERL 372
>gi|392531372|ref|ZP_10278509.1| ATP-dependent RNA helicase; cold shock [Carnobacterium
maltaromaticum ATCC 35586]
gi|414082690|ref|YP_006991393.1| DEAD/DEAH box helicase [Carnobacterium maltaromaticum LMA28]
gi|412996269|emb|CCO10078.1| DEAD/DEAH box helicase family protein [Carnobacterium
maltaromaticum LMA28]
Length = 541
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 125/260 (48%), Gaps = 28/260 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + KL+ V+ LV+DE D + N + ++K++ RQT+ SA++
Sbjct: 128 GRLLDHINRRTLKLDQVETLVLDEADEMLNMG-FLEDIEKIIKEVPKT--RQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
P + I++ K ++ HV + A S + +V C K+ + L+
Sbjct: 185 P-------DAIKRIGVKFMNEPEHVRIQATAMSDSLIDQYYVRCKDFEKFDIMTRLLDVQ 237
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L + Y+ + +++ R + L
Sbjct: 238 TPELTIVF-----GRTKRRVDELSKGLEM----RGYRAEG----IHGDLSQQKRMSVLKS 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR E +VT
Sbjct: 285 FKKGDLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRA--GKEGMSVT- 341
Query: 240 IITSEELFVLQRYENELKFK 259
IT E+ L+ E+ K K
Sbjct: 342 FITPNEMGYLRVIEDLTKKK 361
>gi|381182260|ref|ZP_09891076.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
gi|380317854|gb|EIA21157.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
Length = 502
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 129/272 (47%), Gaps = 36/272 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL++VQ LV+DE D + N + ++ +L S RQT+ SA++
Sbjct: 129 GRILDHINRRTLKLDNVQTLVLDEADEMLNMG-FIDDIESILKEVPS--ERQTLLFSATM 185
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ ++V + + L + F+ +K K+ L L+
Sbjct: 186 PDPIRRIGERFMHD--------PEMVRIKAKEMTAL--LIEQFFIKVHEKEKFDVLSRLL 235
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+PE I+F ++K+ + S L + +++ G ++ R +
Sbjct: 236 DVQSPELAIVF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 281
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + ++
Sbjct: 282 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKEG 338
Query: 236 TVTSIITSEELFVLQRYENELKFKSEELTLQT 267
+ + E+ L+ E K + + L T
Sbjct: 339 MAITFVQPREMGYLRTVEQTTKKRMQPLKPPT 370
>gi|357013855|ref|ZP_09078854.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 433
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 123/258 (47%), Gaps = 24/258 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ + L VQ+LV+DE D + + + +++++A + RQT+F SA++
Sbjct: 134 GRLIDLMNQGFADLRHVQILVLDEADRMLDMGF-IHDMRRIIAKLPA--KRQTLFFSATM 190
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L + + K ++ V A + + K K L+ L+Q +
Sbjct: 191 PPEITSLVDSLLTNPMKIEITPVSSTAER-----IKQSLYFVDKPNKLPLLIDLLQDKSI 245
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
ES ++F ++K + LV L+ K + + + + N+R A+L +
Sbjct: 246 ESALVFT-----RTKHGADR-----LVKGLT---KATITAQAIHGDKSQNARQAALNNFK 292
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
QG +LV+TDIAARGID+ E +H+ N++LP Y+HR GRTGR S S
Sbjct: 293 QGVTRMLVATDIAARGIDIEELSHVINYNLPNIPETYVHRIGRTGRAGLS---GIAISFC 349
Query: 242 TSEELFVLQRYENELKFK 259
EE+ L+ E +K K
Sbjct: 350 EYEEIPYLKDIEKLIKQK 367
>gi|299530392|ref|ZP_07043815.1| hypothetical protein CTS44_06434 [Comamonas testosteroni S44]
gi|298721617|gb|EFI62551.1| hypothetical protein CTS44_06434 [Comamonas testosteroni S44]
Length = 430
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 30/235 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+E + +L +VQ LV+DE D L + L ++LA + RQT+ SA+
Sbjct: 137 GRLLDLVEHNAVRLNAVQHLVLDEADRLLDQGF-AEELNRVLALLPA--KRQTLLLSATF 193
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
PQ+ R LH+ ++ + +D H + P + R + + Q L L+
Sbjct: 194 PQNVEALATRLLHDPVRVQ-VDADQAAEHSTS----PENISQRAIAVDGPRRTQLLRQLV 248
Query: 117 QS--DAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172
+ + PE ++FV ++ + +L D L YK +M+ +
Sbjct: 249 KQGENQPEWERALVFVAKRH----------TAEMLADKL---YKAGIYATTFHGDMSQGA 295
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R L + + LL++TD+AARGID+ + + N+DLPRS DY+HR GRTGR
Sbjct: 296 RKDVLDQFKAKRWQLLITTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGR 350
>gi|357008100|ref|ZP_09073099.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 529
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 113/234 (48%), Gaps = 37/234 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + KL+ VQ +++DE D + + + + S+ KL+ + RQT+ SA
Sbjct: 129 GRLLDHINRKTIKLDDVQTVILDEADEMLDMGFMEDIQSILKLVP-----DERQTMLFSA 183
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + + QQ + + HV V + + ++ ++ K++ L LI +
Sbjct: 184 TMPIN---IQKLAQQFLSNPE--HVSVIPKQVSAPLIDQSYIELHERQKFEALCRLIDME 238
Query: 120 APESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
AP+ IIF V E SE +K G + + G +++ N R
Sbjct: 239 APDLAIIFGRTKRRVDELSEALQKRG----------YTAEGLHG---------DLSQNQR 279
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ + R G +LV+TD+AARG+D+ TH+ NFDLP+ Y+HR GRTGR
Sbjct: 280 DNVMRKFRDGSIDVLVATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGR 333
>gi|357634253|ref|ZP_09132131.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
gi|357582807|gb|EHJ48140.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
Length = 492
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 129/256 (50%), Gaps = 25/256 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + + ++++ LV+DE D +F+ + +K++L++ S RQT+ SA++
Sbjct: 131 GRLLDHMNQGNVRFDALETLVLDEADHMFDMGF-LPDIKRILSALPS--ERQTLLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L + T +D V V + + PL S + H K LL L++
Sbjct: 188 PPAISGLAH-----ETLTDPVTVRIGHMAPL-STVEHAIYPISHTQKAPLLLHLLEEAGK 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+S I+F + +A N L + + +K + L+ ++ R ++ R
Sbjct: 242 QSVIVF----TRTKHRAKN-----LALQLCRSGHKAT----CLQGNLSQRQRQIAMDGFR 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TDIAARGID+ + H+ NFD+P +A Y HR GRTGR ++ + + +
Sbjct: 289 RGSFQVLVATDIAARGIDVSQVGHVVNFDIPDTAEAYTHRIGRTGR---AEHEGQAHTFV 345
Query: 242 TSEELFVLQRYENELK 257
T E++ +++ E+ +K
Sbjct: 346 TGEDMGMVRAIESHMK 361
>gi|422418363|ref|ZP_16495318.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL N1-067]
gi|313634128|gb|EFS00790.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL N1-067]
Length = 526
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KLE+V+ LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 131 GRILDHINRRTLKLENVETLVLDEADEMLNMGF-IDDIETILKEVPA--ERQTLLFSATM 187
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ +++ + + L + FV +K K+ L L+
Sbjct: 188 PDPIRRIGERFMHS--------PELIRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 237
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE IIF ++K+ + S L + +++ G ++ R +
Sbjct: 238 DVQAPELAIIF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 283
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 284 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 335
>gi|452824121|gb|EME31126.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 573
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 117/259 (45%), Gaps = 38/259 (14%)
Query: 7 LIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS------ 60
LIE+HI V ++VIDEVD + L+ LL +S +QT+F SA+
Sbjct: 202 LIERHILNATQVSIVVIDEVDHCLDMPSNGEKLEALLQRCAS--RKQTIFCSATCSSQCV 259
Query: 61 IPQHRRFLHNCI--QQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+ +R+ +N + +WT V P +HH + K + + S++ +
Sbjct: 260 VEASKRYQNNAVVLGSEWTPHGV-----------PQNIHHFMITTSKHKHLEAIRSILFA 308
Query: 119 DA-PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
P + IIFV +Q A L V ++ + + +M RA L
Sbjct: 309 HPLPSAVIIFVNDQHRAGVIASKLQEFKLKVTYMQGN----------QTKM---ERAKVL 355
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ RQ +LV T++ ARG+D P +H+ +LP A YLHRAGR GR +
Sbjct: 356 KDFRQLKYPILVCTEVLARGMDFPFVSHVIQLELPTDAQHYLHRAGRCGRAGVTG---FC 412
Query: 238 TSIITSEELFVLQRYENEL 256
SI++ E FV++++ L
Sbjct: 413 FSIVSPEYQFVMRKFSKAL 431
>gi|428307830|ref|YP_007144655.1| DEAD/DEAH box helicase [Crinalium epipsammum PCC 9333]
gi|428249365|gb|AFZ15145.1| DEAD/DEAH box helicase domain protein [Crinalium epipsammum PCC
9333]
Length = 467
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 129/258 (50%), Gaps = 27/258 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+ + KL+ V+ LV+DE D + S + ++K+L+ RQT F SA++
Sbjct: 130 GRVIDLLNRGNLKLDQVKWLVLDEADEML-SMGFIDDVEKILSQLPV--ERQTAFFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHR-FVICGKKMKYQTLLSLIQSDA 120
P R L + ++ KS V V K P+ ++ + I K + L +++ +
Sbjct: 187 PPVIRSLVS----RFLKSPAT-VSVEQPKAAPTRINQEVYFIPRGWSKAKALQPILELED 241
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRAASLLE 179
PES I+FV +++KA ++ L S + Y G ++N + R L
Sbjct: 242 PESAIVFV-----RTRKAAAELTSQLQAAGHSVDEYHG---------DLNQSQRERLLQR 287
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
RQ +V+TDIAARG+D+ + TH+ N+DLP S +Y+HR GRTGR + + T S
Sbjct: 288 FRQNKVRWIVATDIAARGLDVDDLTHVINYDLPDSVENYIHRIGRTGR---AGKTGTAIS 344
Query: 240 IITSEELFVLQRYENELK 257
+I E LQ E ++
Sbjct: 345 LIQPMERRKLQLIERRVR 362
>gi|83310484|ref|YP_420748.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
gi|82945325|dbj|BAE50189.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
AMB-1]
Length = 583
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 47/251 (18%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVD------FLFNSSKQVSSLKKLLASYSSCNNRQTV 55
G L + E+ L V+VLVIDE D F+ + K V L K+ RQT+
Sbjct: 168 GRLLDMFERGRILLNDVKVLVIDEADRMLDMGFIPDVEKIVGLLPKI---------RQTL 218
Query: 56 FASASI-PQHRR----FLHNCIQQKW-TKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKY 109
F SA++ P+ RR FL N + K T + V A+ + + K
Sbjct: 219 FFSATMGPEIRRLADAFLMNPKEVKVSTGASAATTVVQAL-----------AVVEEIDKR 267
Query: 110 QTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEM 168
+TL LI+ + ++ IF + + VD L S K DV+ L +M
Sbjct: 268 ETLRHLIRIEEVKNAFIFCNRKRD--------------VDVLFRSLKKHGFDVVQLHGDM 313
Query: 169 NFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRK 228
++R +L + ++G L+V +D+AARGID+ +H++NFD+P A DY+HR GRTGR
Sbjct: 314 AQSARGETLEKFKKGEARLMVCSDVAARGIDISAVSHVFNFDVPIHAEDYVHRIGRTGRA 373
Query: 229 PFSDEKWTVTS 239
+T+ S
Sbjct: 374 GMEGHAFTIAS 384
>gi|160897857|ref|YP_001563439.1| DEAD/DEAH box helicase [Delftia acidovorans SPH-1]
gi|160363441|gb|ABX35054.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
Length = 438
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 130/282 (46%), Gaps = 50/282 (17%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+E + +L +V+ LV+DE D L + Q L+++LA RQT+ SA+
Sbjct: 140 GRLLDLVEHNAVRLSAVRHLVLDEADRLLDLGFQ-DELQRVLALLP--KQRQTLLFSATY 196
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIK----PLPSCLHHRFVICGKKMKYQTLLSLIQ 117
P + L + D V V+A + P + R + + + Q L L+Q
Sbjct: 197 PDAVQSLATGLLH-----DPVQARVDAAEGQDAASPQSITQRAIAVDRARRTQLLRQLVQ 251
Query: 118 SDAP--------ESGIIFVGEQ------SEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLL 163
D E ++FV + +EK KAG + ++ G
Sbjct: 252 GDTAAGTDPVTLERALVFVATRHTAELVAEKLYKAG----------IFATAFHG------ 295
Query: 164 LEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAG 223
+++ +R +L + + ++++TD+AARGID+ + + N+DLPRSA DY+HR G
Sbjct: 296 ---DLSQGARKEALADFKAKRWQVMITTDLAARGIDITQLPLVVNYDLPRSATDYVHRIG 352
Query: 224 RTGRKPFSDEKWTVTSIITSEEL--FVLQRYENELKFKSEEL 263
RTGR + E T S +T + + L N+L + E+L
Sbjct: 353 RTGR---AGEDGTAISFVTPADQAHWALICKRNQLDLELEQL 391
>gi|328543973|ref|YP_004304082.1| DEAD/DEAH box helicase [Polymorphum gilvum SL003B-26A1]
gi|326413717|gb|ADZ70780.1| DEAD/DEAH box helicase domain protein [Polymorphum gilvum
SL003B-26A1]
Length = 486
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 125/256 (48%), Gaps = 22/256 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L +E+ L+ V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 131 GRLLDHVERGKLMLQGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + L Q K +V A + V K+ K + LL +++
Sbjct: 186 TMPPEIQRLTETFLQNPAKIEVAPRSSTAENVTQYIVAAGSVDFEKRAKLRELLG--EAE 243
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
++ I+F + + TTL + + +V L +M+ +R +L
Sbjct: 244 DLKNAIVFCNRKRD---------VTTLFRSLERHGF----NVGCLHGDMDQRTRMQTLES 290
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R+G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR S +T+ +
Sbjct: 291 FRKGTLTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGVSYTLVT 350
Query: 240 IITSEELFVLQRYENE 255
S+ L +++ N+
Sbjct: 351 GEDSKYLSAIEKLINK 366
>gi|422421497|ref|ZP_16498450.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL S4-171]
gi|313638753|gb|EFS03844.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL S4-171]
Length = 525
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KLE+V+ LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 129 GRILDHINRRTLKLENVETLVLDEADEMLNMGF-IDDIETILKEVPA--ERQTLLFSATM 185
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ +++ + + L + FV +K K+ L L+
Sbjct: 186 PDPIRRIGERFMHS--------PELIRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 235
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE IIF ++K+ + S L + +++ G ++ R +
Sbjct: 236 DVQAPELAIIF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 281
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 282 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 333
>gi|258645792|ref|ZP_05733261.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
DSM 15470]
gi|260403163|gb|EEW96710.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
DSM 15470]
Length = 510
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ L VQ+LV+DE D + + + ++ +LA RQT+F SA++
Sbjct: 130 GRLMDHMKRGTIDLSHVQILVLDEGDEMVDMGF-IDDIRTILAGMP--EERQTMFFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R L + D V V + A + ++ K+ L L+ + P
Sbjct: 187 PAPIRELAESFLR-----DPVLVKIKAATVTIDLVEQEYIELPDMQKFDCLCRLLDMENP 241
Query: 122 ESGIIFV------GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
E I+FV E +E KK G +++ G +++ R A
Sbjct: 242 ELAIVFVRTKRRADEVTEALKKRG----------YMAEGLHG---------DLSQQKRDA 282
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ + ++G +LV+TD+AARG+D+ TH+YNFD+P+ + Y+HR GRTGR
Sbjct: 283 VVRQFKEGTIDILVATDVAARGLDISGVTHVYNFDMPQDSETYVHRVGRTGR 334
>gi|52078994|ref|YP_077785.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|404487867|ref|YP_006711973.1| DEAD/DEAH box helicase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423680898|ref|ZP_17655737.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis WX-02]
gi|81691189|sp|Q65N62.1|CSHA_BACLD RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|52002205|gb|AAU22147.1| probable ATP-dependent RNA helicase YdbR [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|52346868|gb|AAU39502.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|383442004|gb|EID49713.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis WX-02]
Length = 487
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 124/271 (45%), Gaps = 34/271 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L++V +V+DE D + N + ++ +L++ + + QT+ SA++
Sbjct: 130 GRLLDHINRRTMRLQTVNTVVLDEADEMLNMGF-IEDIESILSNVPAEH--QTLLFSATM 186
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+ N HV V A + S + ++ ++ K+ TL L+
Sbjct: 187 PAPIKRIAERFMTNP----------EHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLL 236
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+PE I+F ++ L + + G ++ R +
Sbjct: 237 DIQSPELAIVF----GRTKRRVDELTEALNLRGYTAEGIHG---------DLTQAKRMVA 283
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + +QG +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +
Sbjct: 284 LRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGM 340
Query: 237 VTSIITSEELFVLQRYENELKFKSEELTLQT 267
+ IT E +L+ E K K + + T
Sbjct: 341 AMTFITPREKDMLRAIEQTTKRKMDRMKAPT 371
>gi|289434134|ref|YP_003464006.1| ATP-dependent RNA helicase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289170378|emb|CBH26918.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
seeligeri serovar 1/2b str. SLCC3954]
Length = 526
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KLE+V+ LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 131 GRILDHINRRTLKLENVETLVLDEADEMLNMGF-IDDIETILKEVPA--ERQTLLFSATM 187
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ +++ + + L + FV +K K+ L L+
Sbjct: 188 PDPIRRIGERFMHS--------PELIRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 237
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE IIF ++K+ + S L + +++ G ++ R +
Sbjct: 238 DVQAPELAIIF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 283
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 284 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 335
>gi|417917647|ref|ZP_12561206.1| DEAD/DEAH box helicase [Streptococcus parasanguinis SK236]
gi|342830284|gb|EGU64623.1| DEAD/DEAH box helicase [Streptococcus parasanguinis SK236]
Length = 523
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 125/256 (48%), Gaps = 30/256 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDHIETLILDEADEMLN----MGFLEDIEAIISRVPETRQTLLFSAT 183
Query: 61 IPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+P+ +R +++ HV + A + + ++ + K+ T+ L+ +
Sbjct: 184 MPEAIKRIGVQFMKEPE------HVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVE 237
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 238 QPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + T
Sbjct: 284 DFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSIT-- 341
Query: 239 SIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 -FVSPNEMGYLQIIEN 356
>gi|91201974|emb|CAJ75034.1| similar to ATP-independent RNA helicase DbpA [Candidatus Kuenenia
stuttgartiensis]
Length = 449
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 134/265 (50%), Gaps = 25/265 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ +L V+VLV+DE D +F+ + ++K++ S + RQT+ SA++
Sbjct: 130 GRLLDHMKQRTIELSRVEVLVLDEADHMFDMGF-LPDIRKIIKCLS--HKRQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R L Q+ TK V V + P S + H + +K LL ++Q
Sbjct: 187 PDEIRKL---AQEALTKP--VTVQLGKTAPA-STVKHALYPVKQHLKIPLLLKILQHTDT 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+S +IF ++K G+ + YK +S + ++ R A+L R
Sbjct: 241 QSVLIFT-RTKYRAKSLGDR--------LIRAGYKATS----FQGNLSQPQRQAALGGFR 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TDIAARGID+ + +H+ N+D+P + Y+HR GRTGR + + +T ++
Sbjct: 288 NGAYQILVATDIAARGIDISQISHVINYDIPDTPEAYVHRIGRTGRAARTGDAFT---LV 344
Query: 242 TSEELFVLQRYENELKFKSEELTLQ 266
T ++ +++ EN L + E TL+
Sbjct: 345 TEDDKAMVRGIENILGSRIERYTLE 369
>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 518
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 122/265 (46%), Gaps = 47/265 (17%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + KL+ V+ +V+DE D + + + S+ KL+ +RQT+ SA
Sbjct: 129 GRLLDHINRKTIKLDDVKTVVLDEADEMLDMGFMDDIQSILKLVPE-----DRQTMLFSA 183
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + + L + V+ V+A PL + ++ ++ K+ L L+ +
Sbjct: 184 TMPANIQKLAQQFLKNPEHVSVIPKQVSA--PL---IDQAYIEVHERQKFDALTRLLDME 238
Query: 120 APESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
+PE I+F V E SE +K G + ++ G +++ N R
Sbjct: 239 SPELAIVFGRTKRRVDELSEALQKQG----------YSADGLHG---------DLSQNQR 279
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ + R G +LV+TD+AARG+D+ TH+ NFDLP+ Y+HR GRTGR
Sbjct: 280 DNVMRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGV 339
Query: 234 KWTVTSIITSEELFVLQRYENELKF 258
W+ FV R + L+F
Sbjct: 340 AWS----------FVTPREMDHLRF 354
>gi|387879215|ref|YP_006309518.1| ATP-dependent RNA helicase [Streptococcus parasanguinis FW213]
gi|386792669|gb|AFJ25704.1| ATP-dependent RNA helicase [Streptococcus parasanguinis FW213]
Length = 523
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 125/256 (48%), Gaps = 30/256 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDHIETLILDEADEMLN----MGFLEDIEAIISRVPETRQTLLFSAT 183
Query: 61 IPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+P+ +R +++ HV + A + + ++ + K+ T+ L+ +
Sbjct: 184 MPEAIKRIGVQFMKEPE------HVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVE 237
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 238 QPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + T
Sbjct: 284 DFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSIT-- 341
Query: 239 SIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 -FVSPNEMGYLQIIEN 356
>gi|386821623|ref|ZP_10108839.1| DNA/RNA helicase, superfamily II [Joostella marina DSM 19592]
gi|386426729|gb|EIJ40559.1| DNA/RNA helicase, superfamily II [Joostella marina DSM 19592]
Length = 447
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 126/256 (49%), Gaps = 26/256 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI++ ++ LV+DE D + S K+ L +++A NR+T+ +A++
Sbjct: 132 GRLIDLIKRKAIDIKKASYLVLDEADEMVTSLKE--GLDEIVAELPK--NRRTMLFTATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L Q + V+ V V+ + H++V+ K + L+ + S
Sbjct: 188 PGTIKQL----IQNYMSKHVIQVSVDMETSGHQGIDHKYVVVEPIEKLEVLMHFLNSKNG 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
E GIIF K+K A N + L ++ F S + GS ++ R + +
Sbjct: 244 EQGIIFC-----KTKAAVNKLAKNLAINKFSSGALHGS---------LSQPIRDRIMGQF 289
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R+G +LV+TD+AARGID+ + +++ N+ LP + Y+HR+GRT R + ++
Sbjct: 290 REGHINILVATDLAARGIDVKDISYVINYHLPDTFEAYVHRSGRTAR---AGANGLALTV 346
Query: 241 ITSEELFVLQRYENEL 256
+ EE+ L +ENEL
Sbjct: 347 LQEEEVSELSEFENEL 362
>gi|374604838|ref|ZP_09677788.1| DEAD/DEAH box helicase [Paenibacillus dendritiformis C454]
gi|374389546|gb|EHQ60918.1| DEAD/DEAH box helicase [Paenibacillus dendritiformis C454]
Length = 517
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 119/253 (47%), Gaps = 40/253 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + +L+ VQ +V+DE D + + + ++S+ L+ RQT+ SA
Sbjct: 129 GRLLDHINRKTIRLDHVQTVVLDEADEMLDMGFMEDITSILSLVPE-----ERQTMLFSA 183
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + + L N + D HV V + + ++ +++K+ L L+ +
Sbjct: 184 TMPPNIQKLANQFLR-----DPEHVSVMPKQVSAPLIEQAYIEVPERVKFDALSRLLDME 238
Query: 120 APESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
+PE I+F V E SE +K G + ++ G +++ N R
Sbjct: 239 SPELAIVFGRTKRRVDELSEALQKRG----------YSADGLHG---------DLSQNQR 279
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ + R G +LV+TD+AARG+D+ TH+ NFDLP+ Y+HR GRTGR
Sbjct: 280 DNVMRKFRDGSIDVLVATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGS 339
Query: 234 KWTVTSIITSEEL 246
W S +T E+
Sbjct: 340 AW---SFVTPREI 349
>gi|395801595|ref|ZP_10480854.1| DEAD/DEAH box helicase [Flavobacterium sp. F52]
gi|395436464|gb|EJG02399.1| DEAD/DEAH box helicase [Flavobacterium sp. F52]
Length = 444
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 127/263 (48%), Gaps = 26/263 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI++ L+ + LV+DE D + K+ SL +++A +T+ SA++
Sbjct: 132 GRLIDLIQRKAIDLKQTEYLVLDEADEMVAILKE--SLDQIIAEIPK--KHRTLLFSATL 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L Q + +V+ + N + H +++ K + L+ + S
Sbjct: 188 PGTIKQL----IQNYLHKNVIQISANMETVGNEGIDHEYIVVDPIEKLEVLMHFLNSRDG 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
E GIIF K+K A N + L ++ F S + GS + R + +
Sbjct: 244 ERGIIFC-----KTKAAVNKLAKNLAINKFSSGALHGS---------LTQGIRDRIMEQF 289
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R+G +LV+TD+AARGID+ E +++ N+ LP + +Y+HR+GRT R + K ++
Sbjct: 290 REGHINILVATDLAARGIDVKEISYVINYHLPDTYENYVHRSGRTAR---AGAKGLSLTV 346
Query: 241 ITSEELFVLQRYENELKFKSEEL 263
+ EE+F + +E EL + E
Sbjct: 347 LQQEEVFEIADFERELGIQFSEF 369
>gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
Length = 471
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 129/267 (48%), Gaps = 34/267 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I++ +L+ V +V+DE D + N V ++ +L+ + RQT+ SA++
Sbjct: 132 GRILDHIQRRTLRLQHVHTVVLDEADEMLNMGF-VEDIEAILSHVPT--ERQTLLFSATM 188
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P+ RF++N ++V V + +P+ + ++ +K K+ TL L+
Sbjct: 189 PEPIRRIAERFMNN--------PELVRVKAKEMT-VPNIEQY-YIEIQEKKKFDTLTRLL 238
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+PE I+F G + + A + L + + G +++ R +
Sbjct: 239 DIQSPELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLSQAKRLSV 285
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + ++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +
Sbjct: 286 LRKFKEGSIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKTGM 342
Query: 237 VTSIITSEELFVLQRYENELKFKSEEL 263
+ +T E+ L E K K E +
Sbjct: 343 AITFVTPREIGQLHHIEKTTKRKMERM 369
>gi|410724044|ref|ZP_11363245.1| DNA/RNA helicase, superfamily II [Clostridium sp. Maddingley
MBC34-26]
gi|410602600|gb|EKQ57078.1| DNA/RNA helicase, superfamily II [Clostridium sp. Maddingley
MBC34-26]
Length = 397
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 131/265 (49%), Gaps = 28/265 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI K +++ ++IDE D L + K+ K ++ + + +RQ + SASI
Sbjct: 133 GRILDLIRKKKITAHTIKTIIIDEGDNLLDP-KRADITKDIIKT--TMKDRQLMLFSASI 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKP-LPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+ ++ + N KP + + H FV+C ++ K++TL ++ +
Sbjct: 190 KPDTLNTAKLLMKEPV------IIKNDDKPSINPNIEHMFVVCERRDKFETLRKILVAVK 243
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE IIFV + ++ TT ++F S D + +++ R ++
Sbjct: 244 PEKAIIFVNDNND-------IELTTAKLNF------HSKDCFAMTGKISKEDRKLAIESF 290
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G +LVS+D+ ARG+D+ TH+ + DLP +YLHRAGRT R + T +
Sbjct: 291 KNGKIKILVSSDVTARGLDVEGITHVLHLDLPLKFNEYLHRAGRTAR---GNAHGTSICL 347
Query: 241 ITSEELFVLQRYENE--LKFKSEEL 263
T ++L ++++YE E ++FK +++
Sbjct: 348 ATIKQLNIIKKYEKEFNIEFKQKKV 372
>gi|423721477|ref|ZP_17695659.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
gi|383365528|gb|EID42823.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
Length = 465
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 124/262 (47%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + LE+V +V+DE D + N + ++ +L++ RQT+ SA++
Sbjct: 129 GRIIDHINRKTLHLENVHTVVLDEADEMLNMGF-IDDIEAILSNVPE--KRQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + ++ K +V V + +P+ + + KK K+ L L+ AP
Sbjct: 186 PEP---IRRIAERFMNKPQIVKVKAKEMT-VPNIQQYYLEVQEKK-KFDILTRLLDIQAP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G +++ R + L + +
Sbjct: 241 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLSQAKRLSVLRKFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + +
Sbjct: 288 EGSIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKTGVAMTFV 344
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E+ L E K K E +
Sbjct: 345 TPREIGQLHNIERTTKRKMERM 366
>gi|304403848|ref|ZP_07385510.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304346826|gb|EFM12658.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 546
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 37/258 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + KL VQ +++DE D + + + ++S+ ++ + RQT+ SA
Sbjct: 129 GRLLDHINRKTIKLADVQTVILDEADEMLDMGFMEDITSILSMVPA-----ERQTMLFSA 183
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + + L V+ V+A PL + ++ ++ K++ L LI +
Sbjct: 184 TMPPNIQRLAQTFLNNPEHVSVIPKQVSA--PL---IDQAYIEVHERQKFEALSRLIDME 238
Query: 120 APESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
+PE IIF V E SE +K G + ++ G +++ N R
Sbjct: 239 SPELAIIFGRTKRRVDELSEALQKRG----------YSADGLHG---------DLSQNQR 279
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ + R G +LV+TD+AARG+D+ TH+ NFDLP+ Y+HR GRTGR
Sbjct: 280 DNVMRKFRDGSIDVLVATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGT 339
Query: 234 KWTVTSIITSEELFVLQR 251
W+ + ++ L +++
Sbjct: 340 AWSFVTPRETDHLHFIEK 357
>gi|418529602|ref|ZP_13095535.1| hypothetical protein CTATCC11996_07935 [Comamonas testosteroni ATCC
11996]
gi|371453317|gb|EHN66336.1| hypothetical protein CTATCC11996_07935 [Comamonas testosteroni ATCC
11996]
Length = 429
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 30/235 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+E + +L +VQ LV+DE D L + L ++LA + RQT+ SA+
Sbjct: 137 GRLLDLVENNAVRLNAVQHLVLDEADRLLDQGF-AEELNRVLALLPA--KRQTLLLSATF 193
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
PQ+ R LH+ ++ + +D H ++ P + R + + Q L L+
Sbjct: 194 PQNVEALAARLLHDPVRVQ-VDADQTAEHSSS----PENISQRAIAVDSTRRTQLLRQLV 248
Query: 117 QS--DAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172
+ PE ++FV ++ + +L D L YK +M+ +
Sbjct: 249 TQGENQPEWERALVFVAKRH----------TAEMLADKL---YKAGIYATTFHGDMSQGA 295
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R L + + LL++TD+AARGID+ + + N+DLPRS DY+HR GRTGR
Sbjct: 296 RKDVLDQFKAKRWQLLITTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGR 350
>gi|424835106|ref|ZP_18259776.1| DEAD-box ATP dependent DNA helicase [Clostridium sporogenes PA
3679]
gi|365978233|gb|EHN14325.1| DEAD-box ATP dependent DNA helicase [Clostridium sporogenes PA
3679]
Length = 525
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 128/260 (49%), Gaps = 26/260 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL + LV+D + + ++ ++AS + +QT+ SA++
Sbjct: 133 GRVLDHINRRTLKLGGIDFLVLDXXXXEMLNMGFIEDIETIMAS--TPEKKQTMLFSATM 190
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHV-NAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P + L + K DV H+ + + H F + K K + + +I S+
Sbjct: 191 PTPIKKL----ALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKD-KLEAICRIIDSEE 245
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLE 179
PES IIF ++K+ VD L + + +V + +M+ N R +L +
Sbjct: 246 PESAIIFC-----RTKRG---------VDELVEAMQSKGYNVEGMHGDMSQNQRINTLKK 291
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++ LV+TD+AARGID+ +H+ N+D+P+ A Y+HR GRTGR +D++ T S
Sbjct: 292 FKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGR---ADKEGTAYS 348
Query: 240 IITSEELFVLQRYENELKFK 259
++T E+ +++ E +K K
Sbjct: 349 LVTPREVSSIRQIERIIKSK 368
>gi|322389137|ref|ZP_08062700.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
903]
gi|321144179|gb|EFX39594.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
903]
Length = 523
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 125/256 (48%), Gaps = 30/256 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDHIETLILDEADEMLN----MGFLEDIEAIISRVPETRQTLLFSAT 183
Query: 61 IPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+P+ +R +++ HV + A + + ++ + K+ T+ L+ +
Sbjct: 184 MPEAIKRIGVQFMKEPE------HVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVE 237
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 238 QPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + T
Sbjct: 284 DFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSIT-- 341
Query: 239 SIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 -FVSPNEMGYLQIIEN 356
>gi|337281654|ref|YP_004621125.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
15912]
gi|419799506|ref|ZP_14324847.1| DEAD/DEAH box helicase [Streptococcus parasanguinis F0449]
gi|335369247|gb|AEH55197.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
15912]
gi|385697930|gb|EIG28331.1| DEAD/DEAH box helicase [Streptococcus parasanguinis F0449]
Length = 523
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 124/256 (48%), Gaps = 30/256 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHIETLILDEADEMLN----MGFLEDIEAIISRVPETRQTLLFSAT 183
Query: 61 IPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+P+ +R +++ HV + A + + ++ + K+ T+ L+ +
Sbjct: 184 MPEAIKRIGVQFMKEPE------HVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVE 237
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
PE IIF ++K+ + + L + F + G +++ N R L
Sbjct: 238 QPELAIIF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + T
Sbjct: 284 DFKNGNVDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSIT-- 341
Query: 239 SIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 -FVSPNEMGYLQIIEN 356
>gi|395781559|ref|ZP_10461977.1| hypothetical protein MCY_00374 [Bartonella rattimassiliensis 15908]
gi|395420992|gb|EJF87250.1| hypothetical protein MCY_00374 [Bartonella rattimassiliensis 15908]
Length = 467
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 126/265 (47%), Gaps = 39/265 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL + RQT+F SA
Sbjct: 136 GRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIEQICKL-----TPFTRQTLFFSA 190
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++ ++FLH+ + + TK+ + + V G K K L
Sbjct: 191 TMAPEITKLTKQFLHSPVSVEVTKASST----------AATITQWLVKSGHKAWDKRAVL 240
Query: 113 LSLIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LIQ++ E + IIF + + S + L + K + +V L +M+
Sbjct: 241 RELIQNEGDELQNAIIFCNRKKDIS-------------ELLKSLIKYNFNVAALHGDMDQ 287
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
SR ++L + + LLV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 288 YSRMSTLADFKNNKLTLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANR 347
Query: 231 SDEKWTVTSIITSEELFVLQRYENE 255
S + +T+ + + + ++ NE
Sbjct: 348 SGKAFTIVTKADKKYINAIEEISNE 372
>gi|417923705|ref|ZP_12567162.1| DEAD/DEAH box helicase [Streptococcus mitis SK569]
gi|342836587|gb|EGU70798.1| DEAD/DEAH box helicase [Streptococcus mitis SK569]
Length = 525
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 130/258 (50%), Gaps = 34/258 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPESRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSLIQ 117
+P + I++ + + HV + A K L + L ++ + K+ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKI-ATKELTTELVDQYYLRVKEQEKFDTMTRLMD 235
Query: 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ PE I+F ++K+ + + L + F + G +++ N R
Sbjct: 236 VEQPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRV 281
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 282 LRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT 341
Query: 237 VTSIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 ---FVSPNEMGYLQIIEN 356
>gi|195350191|ref|XP_002041625.1| GM16768 [Drosophila sechellia]
gi|194123398|gb|EDW45441.1| GM16768 [Drosophila sechellia]
Length = 535
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 129/259 (49%), Gaps = 23/259 (8%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFAS 58
+G+L +L+ I+++E V+ LV+DE D L + + ++S + + Q + AS
Sbjct: 245 LGALSKLVTTGIYRMEQVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLDAGT-QMILAS 303
Query: 59 ASIPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQ 117
A++P + R LH I T +VV H++ + P + +F+ K + +LLSL++
Sbjct: 304 ATMPTNTREILHKVIDVD-TIREVVSPHLHRLMP---HVTQKFLRLSKADRPASLLSLVK 359
Query: 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAAS 176
D + + V N +T+ V FL+NS + L L +M R
Sbjct: 360 QDLAKRRPLIV---------FSNKSTTSDFVSIFLNNS---GVNCLNLNGDMLMKIRLGR 407
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ + G +L +TD+ +RG+D H+ NFD P DY+HR GR GR D K
Sbjct: 408 FEQFQNGHCDVLSTTDVGSRGLDTTRARHVVNFDFPLHVSDYIHRCGRIGRVGNMD-KAL 466
Query: 237 VTSIITS-EELFVLQRYEN 254
VT++I+S E+ V+QR E+
Sbjct: 467 VTNLISSRREIDVVQRIEH 485
>gi|15889136|ref|NP_354817.1| ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
gi|335036272|ref|ZP_08529599.1| ATP-dependent RNA helicase [Agrobacterium sp. ATCC 31749]
gi|15156946|gb|AAK87602.1| ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
gi|333792163|gb|EGL63533.1| ATP-dependent RNA helicase [Agrobacterium sp. ATCC 31749]
Length = 503
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 29/244 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 132 GRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P + L + Q T+ +V A + R V K K L L++
Sbjct: 187 TMPPEIQKLADRFLQNPTRIEVAKPSSTA-----KTVTQRIVAAHNKDYEKRAVLRDLVR 241
Query: 118 SDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
++ E + IIF + + + D + + V L +M+ SR
Sbjct: 242 AEEAELKNAIIFCNRKKD-------------VADLFRSLDRHGFSVGALHGDMDQRSRTT 288
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L R G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR S + +
Sbjct: 289 MLQNFRDGQLTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAF 348
Query: 236 TVTS 239
T+ +
Sbjct: 349 TLVT 352
>gi|90424330|ref|YP_532700.1| DEAD/DEAH box helicase-like protein [Rhodopseudomonas palustris
BisB18]
gi|90106344|gb|ABD88381.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
Length = 503
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 122/252 (48%), Gaps = 45/252 (17%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL+ RQT+F +A
Sbjct: 138 GRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPF-----TRQTLFFTA 192
Query: 60 SIPQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P R FLHN ++ + +K V V + V G++ K +TL
Sbjct: 193 TMPNEIRRITETFLHNPVKIEVSKPASTAVTVTQSQ----------VATGREPHEKRETL 242
Query: 113 LSLIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMN 169
L++ DA + + IIF + E V L+ S K V L +M
Sbjct: 243 RRLLR-DAKDLQNAIIFCNRKRE--------------VALLAKSLEKHGFSVGALHGDME 287
Query: 170 FNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKP 229
++R A+L + R+G +LV++D+AARG+D+PE +H+ NFD+P DY+HR GRTGR
Sbjct: 288 QSARTAALDQFRKGELPILVASDVAARGLDIPEVSHVINFDVPHHPDDYVHRIGRTGR-- 345
Query: 230 FSDEKWTVTSII 241
+ T SI+
Sbjct: 346 -AGRAGTAISIV 356
>gi|414157194|ref|ZP_11413494.1| hypothetical protein HMPREF9186_01914 [Streptococcus sp. F0442]
gi|410868510|gb|EKS16475.1| hypothetical protein HMPREF9186_01914 [Streptococcus sp. F0442]
Length = 523
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 125/256 (48%), Gaps = 30/256 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDHIETLILDEADEMLN----MGFLEDIEAIISRVPETRQTLLFSAT 183
Query: 61 IPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+P+ +R +++ HV + A + + ++ + K+ T+ L+ +
Sbjct: 184 MPEAIKRIGVQFMKEPE------HVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVE 237
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
PE I+F ++K+ + + L + F + G +++ N R L
Sbjct: 238 QPELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + T
Sbjct: 284 DFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSIT-- 341
Query: 239 SIITSEELFVLQRYEN 254
++ E+ LQ EN
Sbjct: 342 -FVSPNEMGYLQIIEN 356
>gi|195498992|ref|XP_002096759.1| GE25850 [Drosophila yakuba]
gi|194182860|gb|EDW96471.1| GE25850 [Drosophila yakuba]
Length = 688
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 132/268 (49%), Gaps = 40/268 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L++ ++ + ++ LV+DE D + + + ++K++ +RQT+ SA+
Sbjct: 400 GRLNDLVQANVIDVSTITYLVLDEADRMLDMGFE-PQIRKVMLDIRP--DRQTIMTSATW 456
Query: 62 PQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P R ++ N IQ D+ H ++K + L + K+ T+ S +
Sbjct: 457 PPGVRRLAQSYMKNPIQVCVGSLDLAATH--SVKQVIQLLED------DREKFSTIKSFV 508
Query: 117 QS-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
++ + IIF G ++ +A + S L F++ G+ D + R
Sbjct: 509 RNMSNTDKIIIFCGRKA----RADDLSSDLTLDGFMTQCIHGNRDQ---------SDREQ 555
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
++ +++ G ++LV+TD+A+RG+D+ + TH+ N+D PR+ +Y+HR GRTGR + K
Sbjct: 556 AIADIKSGAVHILVATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGR---AGRKG 612
Query: 236 TVTSIITSEE-------LFVLQRYENEL 256
T S IT E+ + +LQ E E+
Sbjct: 613 TSISFITREDWGMAKELIDILQEAEQEV 640
>gi|319648702|ref|ZP_08002913.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
gi|317389121|gb|EFV69937.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
Length = 516
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 124/271 (45%), Gaps = 34/271 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L++V +V+DE D + N + ++ +L++ + + QT+ SA++
Sbjct: 110 GRLLDHINRRTMRLQTVNTVVLDEADEMLNMGF-IEDIESILSNVPAEH--QTLLFSATM 166
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+ N HV V A + S + ++ ++ K+ TL L+
Sbjct: 167 PAPIKRIAERFMTNP----------EHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLL 216
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+PE I+F ++ L + + G ++ R +
Sbjct: 217 DIQSPELAIVF----GRTKRRVDELTEALNLRGYTAEGIHG---------DLTQAKRMVA 263
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + +QG +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +
Sbjct: 264 LRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGM 320
Query: 237 VTSIITSEELFVLQRYENELKFKSEELTLQT 267
+ IT E +L+ E K K + + T
Sbjct: 321 AMTFITPREKDMLRAIEQTTKRKMDRMKAPT 351
>gi|158522360|ref|YP_001530230.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
oleovorans Hxd3]
gi|158511186|gb|ABW68153.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
Hxd3]
Length = 425
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 126/267 (47%), Gaps = 27/267 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + L ++VLVIDE D LF+ +KK+L RQT+ SA++
Sbjct: 128 GRLLDHIGRRTANLSKLEVLVIDEADQLFDMGF-FPDIKKILTHLP--KQRQTLLFSATM 184
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P R+ + +Q T V V P + H + + + +K LL L++
Sbjct: 185 PAEIRKLAADILQNPAT------VQVGNEAPADTVSHALYPVA-QHLKTAFLLDLLKQTQ 237
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
S ++F + +A N F S S +G+ ++ R A+L
Sbjct: 238 ARSVLVF----TRTKHRAKNLDQKLAGAGFRSTSLQGN---------LSQVKRQAALDGF 284
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R+G +LV+TDIAARGID+ +H+ N+D+P + Y+HR GRTGR + E +T
Sbjct: 285 RKGTFQILVATDIAARGIDVTRVSHVINYDVPSTPEAYIHRIGRTGRATCTGEAFT---F 341
Query: 241 ITSEELFVLQRYENELKFKSEELTLQT 267
IT E+ +++ L + E+ TL++
Sbjct: 342 ITGEDRNMVRAINRLLGSEIEQRTLES 368
>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
Length = 499
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 123/250 (49%), Gaps = 26/250 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + KL+ V LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 129 GRLLDHINRRTLKLDQVHTLVLDEADEMLNMG-FIDDIESILKNVPE--GRQTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P R+ N + T V V + + S + FV ++ K+ L L+ + +
Sbjct: 186 PGPIRKIAENFMTNPET------VKVKSKEMTVSLIDQYFVKAQEREKFDILARLLDTQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F ++K+ + S L + Y+ + +++ R++ L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSKALSI----RGYQAEG----IHGDLSQAKRSSVLRKF 286
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + ++ +
Sbjct: 287 KEGRIEVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKEGMAMTF 343
Query: 241 ITSEELFVLQ 250
+T E+ L+
Sbjct: 344 VTPREMGYLR 353
>gi|171778647|ref|ZP_02919743.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379704901|ref|YP_005203360.1| ATP-dependent RNA helicase [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171282604|gb|EDT48028.1| DEAD/DEAH box helicase [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|374681600|gb|AEZ61889.1| ATP-dependent RNA helicase [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 533
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 25/240 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KLE V+ L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLEHVETLILDEADEMLN----MGFLEDIEAIISRVPESRQTLLFSAT 183
Query: 61 IPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+P+ +R N ++ HV + A + + ++ + K+ T+ L+ D
Sbjct: 184 MPEPIKRIGVNFMKNPE------HVKIAAKELTTELIDQYYLRVKENEKFDTMTRLMDVD 237
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++ L F + G +++ R L +
Sbjct: 238 QPELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQGKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T S
Sbjct: 285 FKNDNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVS 344
>gi|384249989|gb|EIE23469.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 573
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 45/256 (17%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLA--SYSSCNNRQTVFASA 59
G L LIE+ L V L +DE D + + + +++++ RQT+ SA
Sbjct: 229 GRLSDLIERARVSLSRVTYLALDEADRMLDMGFE-PQIRRIVEQEDMPRTGQRQTLLFSA 287
Query: 60 SIPQHRR-----FLHN----CIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQ 110
+ P+ + FLHN + + + ++++ H+ + P K Q
Sbjct: 288 TFPKEIQRLAADFLHNYIFLAVGRVGSSTELIVQHIEYVSP--------------GDKRQ 333
Query: 111 TLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMN 169
LL LI + G+ V ++++ A L DFL+ N++ +S + + +
Sbjct: 334 VLLDLINT---VEGLTLVFVETKRGADA--------LEDFLAGNNFPATS----IHGDRS 378
Query: 170 FNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKP 229
R A+L R G +LV+TD+AARG+D+P TH+ NFDLP DY+HR GRTGR
Sbjct: 379 QQEREAALRSFRSGRTPILVATDVAARGLDIPHVTHVINFDLPTDVDDYVHRIGRTGR-- 436
Query: 230 FSDEKWTVTSIITSEE 245
+ +K T+ T ++
Sbjct: 437 -AGKKGLATAFFTDKD 451
>gi|344337581|ref|ZP_08768515.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
gi|343802534|gb|EGV20474.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
Length = 462
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 128/257 (49%), Gaps = 27/257 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +L+E L +++LV+DE D + + V + ++A + RQ++ SA++
Sbjct: 133 GRLLELLETGEADLSDLEILVLDEADRMLDMGF-VDDVLTIIARTNPA--RQSMLFSATL 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPL-PSCLHHRFVICGKKMKYQTLLSLIQSDA 120
H R L ++ + VV V N ++ P+ + + G + K Q LL L++++
Sbjct: 190 --HHRGLSRITERMLREPRVVTV--NPVREQHPNITNQVLLSDGPEHKQQQLLWLLRNEN 245
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
E ++F + T L ++L + ++ VL E E +R LL
Sbjct: 246 YEKALVFSNTRD----------GATALGNYLIGEGQRAA-VLHGELEQRERNRVVGLLH- 293
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
G +L++TD+AARG+D+P + NFDLPRS DYLHR GRTGR + E+ S+
Sbjct: 294 -SGRVNVLIATDVAARGLDIPGVERVINFDLPRSGDDYLHRTGRTGR---AGEQGVAISL 349
Query: 241 ITSEE---LFVLQRYEN 254
+ + E L ++RY N
Sbjct: 350 VGASEWNRLESIERYLN 366
>gi|385263594|ref|ZP_10041681.1| DEAD/DEAH box helicase [Bacillus sp. 5B6]
gi|385148090|gb|EIF12027.1| DEAD/DEAH box helicase [Bacillus sp. 5B6]
Length = 517
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 153 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPS--DHQTLLFSATM 209
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 210 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 264
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 265 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 311
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 312 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 368
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 369 TPREKSMLRAIEQTTKRKMDRM 390
>gi|23010493|ref|ZP_00051162.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
magnetotacticum MS-1]
Length = 407
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 120/254 (47%), Gaps = 28/254 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 45 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPF-----TRQTLFFSA 99
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTLLSLIQ 117
++P L + + +V A + + R V G + K + L LI+
Sbjct: 100 TMPPEIERLADMFLHNPQRVEVARPSSTA-----TTIEQRLVATGAEGHEKRKVLRHLIR 154
Query: 118 S-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
S + ++GIIF + + ++ L S+ + ++ L +M+ +R A+
Sbjct: 155 SANELQNGIIFCNRKRDVAQ---------LQRSLTSHGFNAAA----LHGDMDQRARMAA 201
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P +H++NFD+P DY+HR GRTGR + +T
Sbjct: 202 LDGFRSGETPLLVASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRAGHAFT 261
Query: 237 VTSIITSEELFVLQ 250
+ S L ++
Sbjct: 262 LASRADERSLAAIE 275
>gi|424788171|ref|ZP_18214930.1| helicase conserved C-terminal domain protein [Streptococcus
intermedius BA1]
gi|422112935|gb|EKU16692.1| helicase conserved C-terminal domain protein [Streptococcus
intermedius BA1]
Length = 514
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 30/252 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL V++L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHVEILILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K D HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKDPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ P+ I+F ++ L F + G +++ R L
Sbjct: 237 EQPDLSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQGKRLRVLR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 284 DFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT-- 341
Query: 239 SIITSEELFVLQ 250
+ E+ LQ
Sbjct: 342 -FVAPNEMGYLQ 352
>gi|163795533|ref|ZP_02189499.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
gi|159179132|gb|EDP63665.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
Length = 521
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 119/254 (46%), Gaps = 29/254 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + V + LL + RQT+F SA
Sbjct: 136 GRLLDHFERGRILLTDVKILVIDEADRMLDMGFIPDVERIVSLLPTI-----RQTLFFSA 190
Query: 60 SI-PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
++ P+ +R + V V+A + V C K K L SL++S
Sbjct: 191 TMAPEIKRLADKFLMNPK------EVSVDAPASAAENVAQHLVRCSVKDKRDALRSLLKS 244
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASL 177
+ +S +IF + + + L S + + + L +M+ +R +L
Sbjct: 245 ETVDSALIFCNRKRD--------------IGVLHRSLQRYGIEAVQLHGDMSQPARTETL 290
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G L++ +D+AARGID+ +H++NFD+P A DY+HR GRTGR S +T+
Sbjct: 291 AKFKAGEARLVICSDVAARGIDIKGLSHVFNFDVPSHAEDYVHRIGRTGRAGLSGRAFTL 350
Query: 238 TSIITSEELFVLQR 251
+ S+ L ++R
Sbjct: 351 ATPEDSKLLSAVER 364
>gi|418408565|ref|ZP_12981881.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens 5A]
gi|358005479|gb|EHJ97805.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens 5A]
Length = 504
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 29/244 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 132 GRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P + L + Q T+ +V A + R V K K L L++
Sbjct: 187 TMPPEIQKLADRFLQNPTRIEVAKPSSTA-----KTVTQRIVASHNKDYEKRAVLRDLVR 241
Query: 118 SDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
++ E + IIF + + + D + + V L +M+ SR
Sbjct: 242 AEEAELKNAIIFCNRKKD-------------VADLFRSLDRHGFSVGALHGDMDQRSRTT 288
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L R G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR S + +
Sbjct: 289 MLQNFRDGQLTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAF 348
Query: 236 TVTS 239
T+ +
Sbjct: 349 TLVT 352
>gi|387896965|ref|YP_006327261.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens Y2]
gi|387171075|gb|AFJ60536.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens Y2]
Length = 517
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 153 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPS--DHQTLLFSATM 209
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 210 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 264
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 265 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 311
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 312 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 368
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 369 TPREKSMLRAIEQTTKRKMDRM 390
>gi|229828479|ref|ZP_04454548.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
14600]
gi|229793073|gb|EEP29187.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
14600]
Length = 538
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 124/266 (46%), Gaps = 26/266 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + + L SV++LV+DE D + + + + +++ S S RQT+ SA++
Sbjct: 190 GRLLDFMGQDLVDLSSVEILVLDEADRMLDMGF-LPDVSRIVESTPS--KRQTLMFSATM 246
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ R L + + + D V V V + + + ++ K + + SL+ +A
Sbjct: 247 EKEVRQLADRMLK-----DPVQVQVTPENEAADTVEQKLIFSSREDKREIIASLLTDEAV 301
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
ES I+F T D LS K + + + + R +L
Sbjct: 302 ESAIVFT--------------RTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRF 347
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G ++V+TD+AARG+D+P+ +H++N+D+P A Y+HR GRTGR + E ++
Sbjct: 348 KSGKVRVMVATDVAARGLDIPKLSHVFNYDVPEEAGAYIHRIGRTGR---AGESGIAITL 404
Query: 241 ITSEELFVLQRYENELKFKSEELTLQ 266
EL L+ E L+ EL Q
Sbjct: 405 CCEAELDALREVEELLEKPIPELQTQ 430
>gi|150396691|ref|YP_001327158.1| DEAD/DEAH box helicase [Sinorhizobium medicae WSM419]
gi|150028206|gb|ABR60323.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
WSM419]
Length = 499
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRLLDHCERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKMKYQTLL-SLIQ 117
++P + L + Q + +V AI + R V GK + + +L LI+
Sbjct: 187 TMPPEIQKLADRFLQNPERVEVARRSSTAI-----TVTQRLVAAHGKDYEKRAVLRELIR 241
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
S ++ IIF + + ++ F S G S V L +M+ SR A
Sbjct: 242 SQEDLKNAIIFCNRKKDVAEL------------FRSLDRHGFS-VGALHGDMDQRSRMAM 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR S +T
Sbjct: 289 LANFKDGNIKLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFT 348
Query: 237 VTS 239
+ +
Sbjct: 349 IVT 351
>gi|325293235|ref|YP_004279099.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
gi|325061088|gb|ADY64779.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
Length = 533
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 29/244 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 161 GRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 215
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P + L + Q T+ +V A + R V K K L L++
Sbjct: 216 TMPPEIQKLADRFLQNPTRIEVAKPSSTA-----KTVTQRIVASHNKDYEKRAVLRDLVR 270
Query: 118 SDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
++ E + IIF + + + D + + V L +M+ SR
Sbjct: 271 AEEAELKNAIIFCNRKKD-------------VADLFRSLDRHGFSVGALHGDMDQRSRTT 317
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L R G LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR S + +
Sbjct: 318 MLQNFRDGQLTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAF 377
Query: 236 TVTS 239
T+ +
Sbjct: 378 TLVT 381
>gi|410462897|ref|ZP_11316448.1| DNA/RNA helicase, superfamily II [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409983996|gb|EKO40334.1| DNA/RNA helicase, superfamily II [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 501
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 124/256 (48%), Gaps = 25/256 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + + + ++ LV+DE D +F+ + +K++LA+ + RQT+ SA++
Sbjct: 131 GRLLDHLNQGNVRFDGLETLVLDEADHMFDMGF-LPDIKRILAALPA--KRQTLLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L T +D V V + + PL S + H K LL L+
Sbjct: 188 PPAISGLAG-----ETLTDPVTVRIGHLAPL-STVEHAIYPVSHNQKAPLLLHLLGEAGK 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
ES I+F + +A N L + +K + L+ ++ R ++ R
Sbjct: 242 ESVIVF----TRTKHRAKN-----LAQQLCRSGHKAT----CLQGNLSQRQRQIAMDGFR 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TDIAARGID+ + H+ NFD+P +A Y HR GRTGR ++ + +
Sbjct: 289 RGSFQILVATDIAARGIDVSQVAHVVNFDIPDTAEAYTHRIGRTGR---AERDGQAHTFV 345
Query: 242 TSEELFVLQRYENELK 257
T E++ +++ E+ +K
Sbjct: 346 TGEDMGMVRAIESHMK 361
>gi|313892323|ref|ZP_07825915.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
UPII 345-E]
gi|313119182|gb|EFR42382.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
UPII 345-E]
Length = 491
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 24/245 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ L +VQ+ V+DE D + + + ++ ++A+ + RQT+F SA++
Sbjct: 130 GRLMDHMKRKTIDLSNVQIAVLDEGDEMVDMGF-IDDIRTIMAA--TPKERQTLFFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R L N + ++V + + + ++ + K+ L L+ +P
Sbjct: 187 PAPIRELANSF---LNEPEIVKIKAATV--TIDLIEQEYIELPDRQKFDALCRLLDMQSP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+FV ++K+ + + L +Y L +++ R + + + +
Sbjct: 242 ELAIVFV-----RTKRRADEVTEALK----KRAYSAEG----LHGDLSQQKRDSVIRQFK 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + T+ +
Sbjct: 289 EGTIDFLVATDVAARGLDISGVTHVYNFDMPQDPEIYVHRVGRTGR---AGKTGLATTFV 345
Query: 242 TSEEL 246
S E+
Sbjct: 346 ISREM 350
>gi|384264053|ref|YP_005419760.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|452854495|ref|YP_007496178.1| ATP-dependent RNA helicase; cold shock [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|380497406|emb|CCG48444.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|452078755|emb|CCP20506.1| ATP-dependent RNA helicase; cold shock [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 494
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 130 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPS--DHQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 187 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 242 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 289 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 345
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 346 TPREKSMLRAIEQTTKRKMDRM 367
>gi|239909011|ref|YP_002955753.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
gi|239798878|dbj|BAH77867.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
Length = 496
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 124/256 (48%), Gaps = 25/256 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + + + ++ LV+DE D +F+ + +K++LA+ + RQT+ SA++
Sbjct: 131 GRLLDHLNQGNVRFDGLETLVLDEADHMFDMGF-LPDIKRILAALPA--KRQTLLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L T +D V V + + PL S + H K LL L+
Sbjct: 188 PPAISGL-----AAETLTDPVTVRIGHLAPL-STVEHAIYPVSHNQKAPLLLHLLGEAGK 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
ES I+F + +A N L + +K + L+ ++ R ++ R
Sbjct: 242 ESVIVF----TRTKHRAKN-----LAQQLCRSGHKAT----CLQGNLSQRQRQIAMDGFR 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TDIAARGID+ + H+ NFD+P +A Y HR GRTGR ++ + +
Sbjct: 289 RGSFQILVATDIAARGIDVSQVAHVVNFDIPDTAEAYTHRIGRTGR---AERDGQAHTFV 345
Query: 242 TSEELFVLQRYENELK 257
T E++ +++ E+ +K
Sbjct: 346 TGEDMGMVRAIESHMK 361
>gi|429503967|ref|YP_007185151.1| hypothetical protein B938_02225 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429485557|gb|AFZ89481.1| hypothetical protein B938_02225 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 494
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 130 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPS--DHQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 187 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 242 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 289 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 345
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 346 TPREKSMLRAIEQTTKRKMDRM 367
>gi|354593920|ref|ZP_09011963.1| ATP-dependent RNA helicase [Commensalibacter intestini A911]
gi|353673031|gb|EHD14727.1| ATP-dependent RNA helicase [Commensalibacter intestini A911]
Length = 476
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 45/238 (18%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVD------FLFNSSKQVSSLKKLLASYSSCNNRQTV 55
G L L +K L +++LVIDE D F+ + + +S L K RQT+
Sbjct: 163 GRLMDLFDKGAILLNQIKILVIDEADRMLDMGFIPDVERIISFLPK---------TRQTL 213
Query: 56 FASASI-PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLS 114
SA++ P+ ++ + + S+ + V + + + +I +K K TL
Sbjct: 214 LLSATMSPEIKKLTDSFL------SNPTEITVAPPSSVATTIESGLIIVPEKRKRATLRQ 267
Query: 115 LIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS-----YKGSSDVLLLEEEMN 169
L++++ ++ IIF + + VD L+ S ++ S+ L ++
Sbjct: 268 LLRNEGVKNAIIFCNRKKD--------------VDILTRSLNRHGFQSSA----LHGDLT 309
Query: 170 FNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R ++ E + G LV +DIAARGID+ +H++NFDLPR A DY+HR GRTGR
Sbjct: 310 QQHRTKTMEEFKNGEIQFLVCSDIAARGIDVDHLSHVFNFDLPRQAEDYVHRIGRTGR 367
>gi|403238270|ref|ZP_10916856.1| DEAD/DEAH box helicase domain-containing protein [Bacillus sp.
10403023]
Length = 496
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 130/272 (47%), Gaps = 36/272 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL++V+ +V+DE D + N + ++ +L + RQT+ SA++
Sbjct: 129 GRVIDHINRKTLKLQNVKTVVLDEADEMLNMGF-IEDIEAILKGVP--DERQTLLFSATM 185
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+ N VV V + +P+ + + KK K+ L L+
Sbjct: 186 PGPIQRIAERFMKN--------PKVVKVKTKEMT-VPNIQQYYLEVQEKK-KFDVLTRLL 235
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+PE IIF ++K+ + S L L + + G +++ R +
Sbjct: 236 DIQSPELAIIF-----GRTKRRVDELSEALTLRGYAAEGIHG---------DLSQAKRIS 281
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L + ++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +
Sbjct: 282 VLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKTG 338
Query: 236 TVTSIITSEELFVLQRYENELKFKSEELTLQT 267
+ +T E+ L+ EN K K +++ T
Sbjct: 339 MAMTFVTPREIGQLKNVENTTKRKMDKMKPPT 370
>gi|359792245|ref|ZP_09295065.1| ATP-dependent RNA helicase [Mesorhizobium alhagi CCNWXJ12-2]
gi|359251603|gb|EHK54941.1| ATP-dependent RNA helicase [Mesorhizobium alhagi CCNWXJ12-2]
Length = 525
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 112/235 (47%), Gaps = 35/235 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L E+ L V++LVIDE D + + + ++++ RQT+F SA++
Sbjct: 142 GRLLDHRERGKLLLNGVEILVIDEADRMLDMG-FIPDIERICEMIPFT--RQTLFFSATM 198
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTLLS 114
P +FLH V V V+ + + R V G K K +TL +
Sbjct: 199 PPEITKLTEQFLHAP----------VRVEVSRAASSSTNITQRLVKSGPKPWDKRETLRN 248
Query: 115 LI--QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172
LI ++D ++ IIF + E + + + K D L +M+ +
Sbjct: 249 LINAEADGLKNAIIFCNRKVE-------------VAELFRSLVKYDFDAGALHGDMDQRA 295
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R L R G LLV++D+AARG+D+PE +H++N+D+P A DY+HR GRTGR
Sbjct: 296 RMQMLSNFRDGKLKLLVASDVAARGLDIPEVSHVFNYDVPIHAEDYVHRIGRTGR 350
>gi|402297516|ref|ZP_10817285.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
gi|401727307|gb|EJT00499.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
Length = 379
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 128/268 (47%), Gaps = 32/268 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +LIE+ K+ V+V+ IDE D + K+ + + Q +F SA+I
Sbjct: 131 GRLLELIERKKLKVHEVEVVAIDEADRMIAEQSAWEDFTKI--AQRVGRDSQYLFVSATI 188
Query: 62 PQHRRFLHNCIQQKWTKSD----VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQ 117
P+ Q SD +V + + L +HH V ++ + T LI
Sbjct: 189 PE---------QFSGMVSDFAPFIVQLEADG-ALLVEGIHHYVVKIDERDRVDTTRKLIH 238
Query: 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
++ E GI+FV Q E+ + TT +D Y+G V L E + + R +L
Sbjct: 239 AEKIEKGIVFVN-QLERLNE------TTEKLD-----YRGIK-VAALSSEQSKHERERAL 285
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ ++G ++LV+TD+A+RG+D+ E THI D YLHRAGRTGR ++ V
Sbjct: 286 KQFKEGEIHILVATDVASRGLDVEEVTHIIQLDPAADPDSYLHRAGRTGR---MGKEGKV 342
Query: 238 TSIITSEELFVLQRYENELKFKSEELTL 265
++++ ++ + + +Y EL E+ L
Sbjct: 343 LTLMSHKDEYKIAKYTRELGIDITEVKL 370
>gi|420238250|ref|ZP_14742670.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF080]
gi|398087778|gb|EJL78357.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF080]
Length = 517
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 119/259 (45%), Gaps = 28/259 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 132 GRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P + L + Q + +V A + R V K K L LI+
Sbjct: 187 TMPPEIQKLADRFLQNPERIEVAKPSSTA-----KTVTQRLVASHNKDYEKRAVLRDLIK 241
Query: 118 S-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ D ++ IIF + + + D + + V L +M+ SR
Sbjct: 242 AQDDLKNAIIFCNRKVD-------------VADLFRSLERHGFSVGALHGDMDQRSRTTM 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+DLP+ H++NFD+P A DY+HR GRTGR S +T
Sbjct: 289 LQNFRDGNIQLLVASDVAARGLDLPDVGHVFNFDVPIHAEDYVHRIGRTGRAGRSGRAFT 348
Query: 237 VTSIITSEELFVLQRYENE 255
+ + ++ L +++ NE
Sbjct: 349 LVTRSDTKYLDAIEKLINE 367
>gi|418054509|ref|ZP_12692565.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
1NES1]
gi|353212134|gb|EHB77534.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
1NES1]
Length = 532
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 30/232 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L + L V++LVIDE D + + + + KLL RQT+F SA
Sbjct: 134 GRLLDHFGRGRVMLMGVEILVIDEADRMLDMGFIPDIEKICKLLPP-----RRQTLFFSA 188
Query: 60 SIPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK---MKYQTLLSL 115
++P R + ++ D + + V + RFV C K + L L
Sbjct: 189 TMPPEITRLVDQFLK------DPMRIEVAKPATTAKTITQRFVYCQNGEDWAKREMLREL 242
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
I+ ++ IIF + + +L LS K + L +M+ SR
Sbjct: 243 IRDGNVKNAIIFCNRKRD----------VAVLYKSLS---KHGFNAGALHGDMDQTSRMD 289
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L + R G LL ++D+AARG+D+P+ +H++NFDLP +A DY+HR GRTGR
Sbjct: 290 TLDKFRNGEIMLLAASDVAARGLDIPDVSHVFNFDLPWAADDYVHRIGRTGR 341
>gi|149183244|ref|ZP_01861688.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
gi|148849040|gb|EDL63246.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
Length = 470
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 119/256 (46%), Gaps = 24/256 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL +V LV+DE D + N + ++ +L + +NRQT+ SA++
Sbjct: 110 GRMLDHINRRTLKLGNVSTLVLDEADEMLNMGF-IEDIESILKNVP--DNRQTLLFSATM 166
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + N T + V V + +P + FV +K K+ L L+ +P
Sbjct: 167 PGPIRKIANNF---MTDPETVSVKSKEMT-VPHIEQY-FVKAHEKEKFDVLSRLLDVQSP 221
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E IIF ++ L + + G +++ R L + +
Sbjct: 222 ELAIIF----GRTKRRVDELARALTLRGYSAEGIHG---------DLSQAKRMTVLRQFK 268
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + ++ + +
Sbjct: 269 EGRIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKEGMAMTFV 325
Query: 242 TSEELFVLQRYENELK 257
T E+ L+ E K
Sbjct: 326 TPREMGYLRIVEKTTK 341
>gi|436841540|ref|YP_007325918.1| ATP-dependent RNA helicase rhlE [Desulfovibrio hydrothermalis AM13
= DSM 14728]
gi|432170446|emb|CCO23817.1| ATP-dependent RNA helicase rhlE [Desulfovibrio hydrothermalis AM13
= DSM 14728]
Length = 458
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 121/252 (48%), Gaps = 25/252 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ + + KL +V LV+DE D + + + +K+++A + RQ + SA++
Sbjct: 148 GRLIDLLNQGLIKLNNVDTLVLDEADRMLDMGF-LPDIKRIMAKLPA--KRQNLLFSATM 204
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R L + I + V V P S + H F + +K L ++
Sbjct: 205 PSDIRELADKILVRPAT-----VQVANTAPAKS-VKHVFYPVSQHLKNDLLERVLDDTNY 258
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+S ++F + KA N L LS ++G D L+ M+ N R +L R
Sbjct: 259 DSVLVF----TRTKHKAKN------LARKLS--FRGH-DATFLQGNMSQNQRQRALDGFR 305
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G ++V+TDIAARGID TH+ NFD+P +A Y HR GRTGR S +T +
Sbjct: 306 DGTFKVMVATDIAARGIDCERITHVINFDVPDTAETYTHRIGRTGRAGRSGSAFT---FV 362
Query: 242 TSEELFVLQRYE 253
T E+L +++ E
Sbjct: 363 TREDLKIMREVE 374
>gi|403381239|ref|ZP_10923296.1| DEAD/DEAH box helicase [Paenibacillus sp. JC66]
Length = 522
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 118/257 (45%), Gaps = 35/257 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L I + +LE V+ +V+DE D + + + ++ + A S R T+ SA+
Sbjct: 129 GRLLDHINRKTIRLEDVETVVLDEADEMLD----MGFMEDIQAILSQVPEERHTMLFSAT 184
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + + QQ D HV V + + ++ +K K++ L LI +A
Sbjct: 185 MPPN---IQKLAQQFL--RDPQHVSVIPKQVSAPLIQQAYIEVHEKQKFEALCRLIDMEA 239
Query: 121 PESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
P+ IIF V E SE +K G S +G L +++ N R
Sbjct: 240 PDLAIIFGRTKRRVDELSEALQKRGY-------------SAEG------LHGDLSQNQRD 280
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEK 234
+ + R G +LV+TD+AARG+D+ +H+ NFDLP+ Y+HR GRTGR
Sbjct: 281 NVMRKFRDGSIDVLVATDVAARGLDVSGVSHVVNFDLPQDPESYVHRIGRTGRAGKEGTA 340
Query: 235 WTVTSIITSEELFVLQR 251
WT + + L ++R
Sbjct: 341 WTFVTPREIDHLHFIER 357
>gi|319938761|ref|ZP_08013125.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
1_2_62CV]
gi|319811811|gb|EFW08077.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
1_2_62CV]
Length = 565
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 122/255 (47%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL V+ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 175 GRLLDLIKRKALKLNHVETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 230
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I K+ K + HV + A + + ++ + K+ T+ L+ +
Sbjct: 231 MPDAIK----RIGMKFMK-EPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQ 285
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ R L +
Sbjct: 286 PELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVLRD 331
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 332 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 388
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 389 FVAPNEMGYLQIIEN 403
>gi|338737945|ref|YP_004674907.1| RNA helicase [Hyphomicrobium sp. MC1]
gi|337758508|emb|CCB64333.1| RNA helicase [Hyphomicrobium sp. MC1]
Length = 542
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 103/219 (47%), Gaps = 30/219 (13%)
Query: 15 LESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCI 72
L V++LVIDE D + + + + KLL RQT+F SA++P L N
Sbjct: 147 LMGVEILVIDEADRMLDMGFIPDIEKICKLLPP-----RRQTLFFSATMPPEITRLVNQF 201
Query: 73 QQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK---MKYQTLLSLIQSDAPESGIIFVG 129
+ +V A + RFV C K + L +I+ ++ IIF
Sbjct: 202 LNNPERIEVAKPATTA-----KTITQRFVYCQNGEDWAKREVLRDMIRDGNVKNAIIFCN 256
Query: 130 EQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLL 188
+ + V L S K + L +M+ SR +L + R G LL
Sbjct: 257 RKRD--------------VAVLHKSLTKHGFNAGALHGDMDQTSRMETLDKFRAGEIMLL 302
Query: 189 VSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++D+AARG+D+PE +H++NFDLP +A DY+HR GRTGR
Sbjct: 303 AASDVAARGLDIPEVSHVFNFDLPWAADDYVHRIGRTGR 341
>gi|315499759|ref|YP_004088562.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB
48]
gi|315417771|gb|ADU14411.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
48]
Length = 501
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 138/275 (50%), Gaps = 39/275 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L L E+ L VQ++V+DE D + + + + KL + +RQT+F SA
Sbjct: 132 GRLLDLFERSKVMLNGVQLMVVDEADRMLDMGFIPDIERIFKL-----TPPSRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNA-IKPLPSCLHHRFVICGKKMKYQTLL 113
++P +FL N ++ + ++ + ++ + +PS + + K++ +TL+
Sbjct: 187 TMPPEITRLTEQFLKNPVRIEVSRPATTNENITQYVYRVPSG-DSKLLAKAKRLALRTLI 245
Query: 114 SLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNS 172
++ + +GI+F +++ VD ++ S + + +++ +
Sbjct: 246 GQLEIN---NGIVFCNRKTD--------------VDIVAKSLSVHGFNAAPIHGDLDQSL 288
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSD 232
R +L R G LLV++D+AARG+D+P +H++NFD+P A DY+HR GRTGR +
Sbjct: 289 RMKTLDAFRSGELKLLVASDVAARGLDIPSVSHVFNFDVPHHADDYVHRIGRTGRAGRTG 348
Query: 233 EKWTVTSIITSEELFVLQRYENELKF-KSEELTLQ 266
E + + + ++E + Y+ LK K E TL+
Sbjct: 349 EAYLI--LAPNDE----KNYDKVLKLIKKEPNTLE 377
>gi|329121361|ref|ZP_08249987.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
gi|327469770|gb|EGF15236.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
Length = 497
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 122/245 (49%), Gaps = 24/245 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ L +VQ+ V+DE D + + + ++ ++A+ + RQT+F SA++
Sbjct: 136 GRLMDHMKRKTIDLSNVQIAVLDEGDEMVDMGF-IDDIRTIMAA--TPKERQTLFFSATM 192
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R L N + ++V + + + ++ + K+ L L+ +P
Sbjct: 193 PAPIRELANSF---LNEPEIVKIKAATV--TIDLIEQEYIELPDRQKFDALCRLLDMQSP 247
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+FV ++K+ A T + + S +G L +++ R + + + +
Sbjct: 248 ELAIVFV-----RTKR--RADEVTEALKKRAYSAEG------LHGDLSQQKRDSVIRQFK 294
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + T+ +
Sbjct: 295 EGTIDFLVATDVAARGLDISGVTHVYNFDMPQDPEIYVHRVGRTGR---AGKTGLATTFV 351
Query: 242 TSEEL 246
S E+
Sbjct: 352 ISREM 356
>gi|154684961|ref|YP_001420122.1| hypothetical protein RBAM_004920 [Bacillus amyloliquefaciens FZB42]
gi|154350812|gb|ABS72891.1| YdbR [Bacillus amyloliquefaciens FZB42]
Length = 511
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 147 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPS--DHQTLLFSATM 203
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 204 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 258
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 259 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 305
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 306 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 362
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 363 TPREKSMLRAIEQTTKRKMDRM 384
>gi|333915842|ref|YP_004489574.1| DEAD/DEAH box helicase domain-containing protein [Delftia sp.
Cs1-4]
gi|333746042|gb|AEF91219.1| DEAD/DEAH box helicase domain protein [Delftia sp. Cs1-4]
Length = 491
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 130/282 (46%), Gaps = 50/282 (17%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+E + +L +V+ LV+DE D L + Q L+++LA RQT+ SA+
Sbjct: 193 GRLLDLVEHNAVRLSAVRHLVLDEADRLLDLGFQ-EELQRVLALLP--KQRQTLLFSATY 249
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIK----PLPSCLHHRFVICGKKMKYQTLLSLIQ 117
P + L + D V V+A + P + R + + + Q L L+Q
Sbjct: 250 PDAVQSLATGLLH-----DPVQARVDAAEGQDAASPQSITQRAIAVDRARRTQLLRQLVQ 304
Query: 118 SDAP--------ESGIIFVGEQ------SEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLL 163
D E ++FV + +EK KAG + ++ G
Sbjct: 305 GDTAAGTDPVTLERALVFVATRHTAELVAEKLYKAG----------IFATAFHG------ 348
Query: 164 LEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAG 223
+++ +R +L + + ++++TD+AARGID+ + + N+DLPRSA DY+HR G
Sbjct: 349 ---DLSQGARKEALADFKAKRWQVMITTDLAARGIDITQLPLVVNYDLPRSATDYVHRIG 405
Query: 224 RTGRKPFSDEKWTVTSIITSEEL--FVLQRYENELKFKSEEL 263
RTGR + E T S +T + + L N+L + E+L
Sbjct: 406 RTGR---AGEDGTAISFVTPADQAHWALICKRNQLDLELEQL 444
>gi|399216152|emb|CCF72840.1| unnamed protein product [Babesia microti strain RI]
Length = 561
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNRQTVFASA 59
G L L+E+ SV+ LV+DE D + + S Q+ ++ + +S RQTV SA
Sbjct: 263 GRLTDLVERRKVNFTSVKYLVLDEADRMLDMGFSPQIRAIVEDNGMPTSMEGRQTVMFSA 322
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + D +++ V + + R G+ K + L+ L+ +
Sbjct: 323 TFPREIQILAKDFLR-----DYIYLTVGRVGSTNEFIRQRVQYAGQDQKAKYLVKLLNEN 377
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
+ +IFV E ++A + L +FL+ S G + + R +L
Sbjct: 378 SNGLVLIFV----ETKRRADMIEAYLLNENFLAVSIHG---------DRSQQDREEALRL 424
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ G +LV+TD+AARG+D+ TH+ N DLP + DY+HR GRTGR
Sbjct: 425 FKTGKRPILVATDVAARGLDISNITHVINCDLPSNIDDYVHRIGRTGR 472
>gi|28211624|ref|NP_782568.1| ATP-dependent RNA helicase [Clostridium tetani E88]
gi|28204066|gb|AAO36505.1| ATP-dependent RNA helicase [Clostridium tetani E88]
Length = 524
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 126/254 (49%), Gaps = 27/254 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCN-NRQTVFASAS 60
G + LI + L ++ LV+DE D + N V ++ +L SCN +R+T+ SA+
Sbjct: 131 GRVQDLINRKALNLSHIEFLVLDEADEMLNMG-FVDDIENIL---KSCNEDRRTLLFSAT 186
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P I +K+ K D HV + S + + +K K+++L ++ D
Sbjct: 187 MPSE----IKKIAKKYMKKDAKHVAIAQNSMTVSSVEQFYYEVKQKNKFESLCKVLSVDE 242
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLE 179
P IIF K+KK VD L +S K + +M + R +L
Sbjct: 243 PTRAIIFC-----KTKKG---------VDELVSSMKEKGFSAEGMHGDMTQSHRLNTLNR 288
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++ LV+TD+AARGID+ +T+H+ N+DLP+ Y+HR GRTGR +++K T +
Sbjct: 289 FKERTIPFLVATDVAARGIDVKDTSHVINYDLPQDTESYVHRIGRTGR---ANKKGTAYT 345
Query: 240 IITSEELFVLQRYE 253
+T +E L+R +
Sbjct: 346 FVTPKEFSSLKRIQ 359
>gi|299133793|ref|ZP_07026987.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
gi|298591629|gb|EFI51830.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
Length = 472
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 125/261 (47%), Gaps = 40/261 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + KL+ RQT+F +A
Sbjct: 131 GRLLDHTERGKLLMTGVELLVIDEADRMLDMGFIPDIERICKLVPF-----TRQTLFFTA 185
Query: 60 SIPQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQT--L 112
++P R FLHN ++ + +K V V +F I K ++ L
Sbjct: 186 TMPAEIRRITETFLHNPVKVEVSKPASTAVTVT-----------QFQISTGKESHEKREL 234
Query: 113 LSLIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
L + DA + + IIF + E +L L G++ L +M+
Sbjct: 235 LRQLLRDAKDLKNAIIFCNRKRE----------VAILHKSLQKHGFGAA---ALHGDMDQ 281
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
++R A+L + R+G LLV++D+AARG+D+PE +H++NFD+P DY+HR GRTGR
Sbjct: 282 SARMAALEQFRKGELPLLVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGR 341
Query: 231 SDEKWTVTSIITSEELFVLQR 251
++ S + + + +++
Sbjct: 342 LGTAISIVSPLDQKSILAIEK 362
>gi|227510007|ref|ZP_03940056.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190502|gb|EEI70569.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 431
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 109/226 (48%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LIE KL+ +Q +VIDE D L S + S+++L+ + ++ Q F SA+
Sbjct: 120 GRLMNLIELGKLKLDDIQTIVIDEADNLL-SEDTLDSIRELVDQ--APDDTQLGFFSAT- 175
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
Q+ H +W D+ V I + H + K K Q LL +
Sbjct: 176 -QNDILKH---VNRWFNQDMQIFDVTDIDDTQGIVKHGLLQVSNKKKEQMLLRFLHMKDF 231
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
++ ++F + + K +G FL + + + L E N SR +L + R
Sbjct: 232 KA-LVFFDQLNTLQKVSG----------FLIHRH--VREAAKLTSEQNQTSRQNALRDFR 278
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+G LL++TD+AARGID+P+ + NFDLPR A Y HR GRTGR
Sbjct: 279 KGKVRLLLTTDVAARGIDIPKLPAVINFDLPRDARTYTHRIGRTGR 324
>gi|408378089|ref|ZP_11175688.1| ATP-dependent RNA helicase [Agrobacterium albertimagni AOL15]
gi|407748203|gb|EKF59720.1| ATP-dependent RNA helicase [Agrobacterium albertimagni AOL15]
Length = 505
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 132 GRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P + L + Q + +V A + R V C K K TL LI+
Sbjct: 187 TMPPEIQKLADQFLQNPERIEVAPPSSTA-----KTVTQRLVACHNKDYEKRSTLRDLIR 241
Query: 118 S-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ D ++ IIF + + + D + + V L +M+ SR
Sbjct: 242 AQDDLKNAIIFCNRKKD-------------VADLFRSLDRHGFSVGALHGDMDQRSRTTM 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR S +T
Sbjct: 289 LANFKANAITLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFT 348
Query: 237 VTS 239
+ +
Sbjct: 349 LVT 351
>gi|167622797|ref|YP_001673091.1| ATP-dependent RNA helicase SrmB [Shewanella halifaxensis HAW-EB4]
gi|167352819|gb|ABZ75432.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 411
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 28/256 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + ++K F E V+VL+IDE D + + S++ + +A S +QT+ SA++
Sbjct: 135 GRLMEYLDKGHFNAEEVEVLIIDEADRMLDMG--FSAVVETIA-IESVGRKQTMLFSATL 191
Query: 62 PQHR--RFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSLIQS 118
RF H + ++ V + A + + +H + K K+ L +L++
Sbjct: 192 EGSDVGRFSHELL------TNPVKLEAEAPRSEKAKIHQWIHLADDKAHKFALLCALLKQ 245
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ + I+FV K+++A + L + ++ ++ + +M +R +L
Sbjct: 246 EEVQRTIVFV-----KTREAVASLEGLLQKEGITCAF--------MRGDMEQKARFQALG 292
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+G +L++TD+AARGID+ + TH+ NFD+PRSA Y+HR GRTGR + K T
Sbjct: 293 RFTKGEVNILLATDVAARGIDIDDITHVINFDMPRSADTYVHRIGRTGR---AGAKGTAI 349
Query: 239 SIITSEELFVLQRYEN 254
S++ + ++ V+ + E
Sbjct: 350 SLVEAHDIRVVGKIER 365
>gi|170747431|ref|YP_001753691.1| DEAD/DEAH box helicase [Methylobacterium radiotolerans JCM 2831]
gi|170653953|gb|ACB23008.1| DEAD/DEAH box helicase domain protein [Methylobacterium
radiotolerans JCM 2831]
Length = 527
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 118/254 (46%), Gaps = 28/254 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPF-----TRQTLFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P L + + +V A + + R V G + K + L LI+
Sbjct: 186 TMPPEIERLADMFLHNPQRVEVARPASTA-----TTITQRLVATGAEGHAKRERLRGLIR 240
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++GIIF + + + L +S+ + D L +M+ +R +
Sbjct: 241 GEEDLKNGIIFCNRKRDVA---------LLQKSLVSHGF----DAAALHGDMDQRARTTA 287
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P +H++NFD+P DY+HR GRTGR S +T
Sbjct: 288 LDGFRNGETALLVASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGTAYT 347
Query: 237 VTSIITSEELFVLQ 250
+ + + L ++
Sbjct: 348 LVAPDDARSLGAIE 361
>gi|195575623|ref|XP_002077677.1| GD23047 [Drosophila simulans]
gi|194189686|gb|EDX03262.1| GD23047 [Drosophila simulans]
Length = 539
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 122/262 (46%), Gaps = 25/262 (9%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASY------SSCNNRQT 54
+G+L +L+ I+++E V+ LV+DE D L + + L L + Q
Sbjct: 245 LGALSKLVTTGIYRMEQVRHLVLDEADTLLDDTF-TDKLSYFLRRFPFHLVQKEDAGTQM 303
Query: 55 VFASASIPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLL 113
+ ASA++P + R LH I T +VV H++ + P + +F+ K + TLL
Sbjct: 304 ILASATMPTNTREILHKVIDVD-TIREVVSPHLHRLMP---HVTQKFLRLSKADRPATLL 359
Query: 114 SLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNS 172
SL++ D + + V N +T+ V FL+NS + L L +M
Sbjct: 360 SLVKQDLAKRRPLIV---------FSNKSTTSDFVSIFLNNS---GVNCLNLNGDMLMKI 407
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSD 232
R + + G +L +TD+ +RG+D H+ NFD P DY+HR GR GR D
Sbjct: 408 RLGRFEQFQNGHCDVLSTTDVGSRGLDTTRARHVVNFDFPLHVSDYIHRCGRIGRVGNMD 467
Query: 233 EKWTVTSIITSEELFVLQRYEN 254
+ I + E+ V+QR E+
Sbjct: 468 KSLVTNLISSRREIDVVQRIEH 489
>gi|253702296|ref|YP_003023485.1| DEAD/DEAH box helicase [Geobacter sp. M21]
gi|251777146|gb|ACT19727.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
Length = 381
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +L+ K+ KL SV LV+DE D L+ Q ++++LA + RQ + SA+I
Sbjct: 134 GRLLELVAKNSVKLSSVATLVLDEADRLYAEDFQ-DEMQQILALLPA--KRQNLLFSATI 190
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L + SD + + + A + + + K L LI+S
Sbjct: 191 PPEVERLAASLL-----SDPMRIEIEAKASETELISQQIYLVDSSRKGPLLRYLIKSGDW 245
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ ++F Q K+A N + L+ + +S S S M+ R A+L + +
Sbjct: 246 KQVLVFTSSQ----KRADNV-TRKLVANGISASTFHSG--------MSQGGRTAALAKFK 292
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
G +LV+TD+A+RGID+ H+ N++LPRS IDY HR GRTGR
Sbjct: 293 TGELRVLVATDLASRGIDVQSLPHVVNYELPRSPIDYQHRIGRTGR 338
>gi|227512942|ref|ZP_03942991.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
gi|227523070|ref|ZP_03953119.1| ATP-dependent RNA helicase [Lactobacillus hilgardii ATCC 8290]
gi|227083942|gb|EEI19254.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
gi|227089888|gb|EEI25200.1| ATP-dependent RNA helicase [Lactobacillus hilgardii ATCC 8290]
Length = 431
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 109/226 (48%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LIE KL+ +Q +VIDE D L S + S+++L+ + ++ Q F SA+
Sbjct: 120 GRLMNLIELGKLKLDDIQTIVIDEADNLL-SEDTLDSIRELVDQ--APDDTQLGFFSAT- 175
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
Q+ H +W D+ V I + H + K K Q LL +
Sbjct: 176 -QNDILKH---VNRWFNQDMQIFDVTDIDDTQGIVKHGLLQVSNKKKEQMLLRFLHMKDF 231
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
++ ++F + + K +G FL + + + L E N SR +L + R
Sbjct: 232 KA-LVFFDQLNTLQKVSG----------FLIHRH--VREAAKLTSEQNQTSRQNALRDFR 278
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+G LL++TD+AARGID+P+ + NFDLPR A Y HR GRTGR
Sbjct: 279 KGKVRLLLTTDVAARGIDIPKLPAVINFDLPRDARTYTHRIGRTGR 324
>gi|25010852|ref|NP_735247.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae NEM316]
gi|76786821|ref|YP_329524.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
gi|76799328|ref|ZP_00781491.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 18RS21]
gi|77406817|ref|ZP_00783849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae H36B]
gi|77411327|ref|ZP_00787675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae CJB111]
gi|406709269|ref|YP_006763995.1| ATP-dependent RNA helicase [Streptococcus agalactiae GD201008-001]
gi|424049656|ref|ZP_17787207.1| DEAD/DEAH box helicase [Streptococcus agalactiae ZQ0910]
gi|23095231|emb|CAD46441.1| Unknown [Streptococcus agalactiae NEM316]
gi|76561878|gb|ABA44462.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae A909]
gi|76585318|gb|EAO61913.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 18RS21]
gi|77162587|gb|EAO73550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae CJB111]
gi|77174571|gb|EAO77408.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae H36B]
gi|389648929|gb|EIM70418.1| DEAD/DEAH box helicase [Streptococcus agalactiae ZQ0910]
gi|406650154|gb|AFS45555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae GD201008-001]
Length = 528
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 23/239 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHIETLILDEADEMLN----MGFLEDIEAIISRVPETRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I K+ K D HV + A + + +V + K+ T+ L+ D
Sbjct: 184 MPDPIK----RIGVKFMK-DPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLMDVDQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F ++ L F + G +++ N R + +
Sbjct: 239 PELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRVIRDF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T S
Sbjct: 286 KNDHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVS 344
>gi|169829741|ref|YP_001699899.1| ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus C3-41]
gi|168994229|gb|ACA41769.1| Probable ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus
C3-41]
Length = 508
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 118/256 (46%), Gaps = 24/256 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KLE VQ LV+DE D + N + + +L + S RQT+ SA++
Sbjct: 129 GRIIDHINRRTLKLEDVQTLVLDEADEMLNMGF-IDDINAILENVPS--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + + D V + A + + FV ++ K+ L L+ P
Sbjct: 186 PPAIRKIAETFMR-----DPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLNVHQP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E IIF G + + A S + +L+ G +++ R + L + +
Sbjct: 241 ELAIIF-GRTKRRVDELAQALS---IRGYLAEGIHG---------DLSQAKRISVLRQFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+ +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + +
Sbjct: 288 ENKIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKSGLAVTFV 344
Query: 242 TSEELFVLQRYENELK 257
T E+ L+ E K
Sbjct: 345 TPREMGYLRIVEETTK 360
>gi|22536941|ref|NP_687792.1| DEAD/DEAH box helicase [Streptococcus agalactiae 2603V/R]
gi|22533794|gb|AAM99664.1|AE014227_8 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 2603V/R]
Length = 528
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 23/239 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHIETLILDEADEMLN----MGFLEDIEAIISRVPETRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I K+ K D HV + A + + +V + K+ T+ L+ D
Sbjct: 184 MPDPIK----RIGVKFMK-DPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLMDVDQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F ++ L F + G +++ N R + +
Sbjct: 239 PELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRVIRDF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T S
Sbjct: 286 KNDHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVS 344
>gi|299538292|ref|ZP_07051577.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
gi|298726494|gb|EFI67084.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
Length = 507
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 118/256 (46%), Gaps = 24/256 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KLE VQ LV+DE D + N + + +L + S RQT+ SA++
Sbjct: 129 GRIIDHINRRTLKLEDVQTLVLDEADEMLNMGF-IDDINSILENVPS--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + + D V + A + + FV ++ K+ L L+ P
Sbjct: 186 PPAIRKIAETFMR-----DPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLNVHQP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E IIF G + + A S + +L+ G +++ R + L + +
Sbjct: 241 ELAIIF-GRTKRRVDELAQALS---IRGYLAEGIHG---------DLSQAKRISVLRQFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+ +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + +
Sbjct: 288 ENKIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKSGLAVTFV 344
Query: 242 TSEELFVLQRYENELK 257
T E+ L+ E K
Sbjct: 345 TPREMGYLRIVEETTK 360
>gi|422881818|ref|ZP_16928274.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355]
gi|332363463|gb|EGJ41246.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355]
Length = 523
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 122/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNQIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
D PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 237 DQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555]
gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016]
gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555]
gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 524
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 125/253 (49%), Gaps = 25/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + + + L +++ L IDE D + + + +++++ + S NRQT+ SA++
Sbjct: 131 GRILDHLHRKTLDLSNIEFLTIDEADEMLDMG-FIEDIEEIIKA--SNPNRQTLLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L + K+ S+ ++ + + K ++++L ++ D P
Sbjct: 188 PDQVKRLAS----KYMSSNTKYITIAKNTLTVEKTKQYYYEIKHKDRFESLCRILDVDEP 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
S IIF K+K+ VD L S + +V + +M N R +L +
Sbjct: 244 SSAIIFC-----KTKRG---------VDELVESMQARGYNVEGMHGDMGQNQRLNTLRKF 289
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G LV+TD+AARGID+ +H+ N+DLP+ Y+HR GRTGR ++++ S+
Sbjct: 290 KEGSLDFLVATDVAARGIDVENVSHVINYDLPQDTESYVHRIGRTGR---ANKEGIAYSL 346
Query: 241 ITSEELFVLQRYE 253
+T E +L++ E
Sbjct: 347 VTPREYILLKQIE 359
>gi|424736339|ref|ZP_18164799.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZB2]
gi|422949942|gb|EKU44315.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZB2]
Length = 507
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 118/256 (46%), Gaps = 24/256 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KLE VQ LV+DE D + N + + +L + S RQT+ SA++
Sbjct: 129 GRIIDHINRRTLKLEDVQTLVLDEADEMLNMGF-IDDINSILENVPS--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + + D V + A + + FV ++ K+ L L+ P
Sbjct: 186 PPAIRKIAETFMR-----DPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLNVHQP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E IIF G + + A S + +L+ G +++ R + L + +
Sbjct: 241 ELAIIF-GRTKRRVDELAQALS---IRGYLAEGIHG---------DLSQAKRISVLRQFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+ +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + +
Sbjct: 288 ENKIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKSGLAVTFV 344
Query: 242 TSEELFVLQRYENELK 257
T E+ L+ E K
Sbjct: 345 TPREMGYLRIVEETTK 360
>gi|421732891|ref|ZP_16172007.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|407073252|gb|EKE46249.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 494
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 129/263 (49%), Gaps = 26/263 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 130 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPS--DHQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 187 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
E I+F ++K+ + + L L + + G ++ R +L +
Sbjct: 242 ELAIVF-----GRTKRRVDELTEALNLRGYAAEGIHG---------DLTQAKRMVALRKF 287
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + +
Sbjct: 288 KEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTF 344
Query: 241 ITSEELFVLQRYENELKFKSEEL 263
IT E +L+ E K K + +
Sbjct: 345 ITPREKNMLRAIEQTTKRKMDRM 367
>gi|367470617|ref|ZP_09470306.1| Cold-shock DEAD-box protein A [Patulibacter sp. I11]
gi|365814311|gb|EHN09520.1| Cold-shock DEAD-box protein A [Patulibacter sp. I11]
Length = 503
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 112/237 (47%), Gaps = 23/237 (9%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+G + LI++ +L S + +V+DE D + + + ++K+L + N RQT SA+
Sbjct: 128 VGRVLDLIDRGALQLGSCRFVVLDEADEMLDLGF-LEDVEKIL--RRTPNGRQTSLFSAT 184
Query: 61 I-PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P R+ N + D VHV V A + V K K Q L +I+++
Sbjct: 185 MAPPIRKLADNYLY------DPVHVKVKADTLTVDTVEQFRVEVNAKDKPQKLAEVIEAE 238
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
P I+F K G LL D +N V L +++ R +L
Sbjct: 239 RPSQAIVFC------RTKIGTDRLFRLLKDRGNN-------VRALHGDLSQGQRDGVMLA 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ G LLV+TD+AARG+D+ TH+ N+D+PRS Y+HR GRTGR S T
Sbjct: 286 FKGGRVPLLVATDVAARGLDISTVTHVINYDVPRSPDTYVHRIGRTGRAGASGRAIT 342
>gi|354557827|ref|ZP_08977084.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353549501|gb|EHC18942.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 497
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 26/259 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + +L ++++V+DE D + N V + +L NRQT+ SA++
Sbjct: 129 GRLMDHMRRKTIRLSEIKIVVLDEADEMLNMGF-VEDIHTILQEVPE--NRQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + N Q+ + +++ V + + + ++ +K K+ L L+ +P
Sbjct: 186 P---RSIQNLAQRFMKEPELISVKAKEVTV--ANIEQHYLEVQEKQKFDVLCRLLDMQSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRAASLLEV 180
E I+F T VD L+ K + ++ + R + L +
Sbjct: 241 ELAIVF--------------GRTKRRVDELAEGLNKRGYSAEGIHGDLTQSKRDSVLRQF 286
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + +
Sbjct: 287 KEGTIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKTGLAVTF 343
Query: 241 ITSEELFVLQRYENELKFK 259
+T E+ L+ E K K
Sbjct: 344 VTPREIGQLRMIEQLTKRK 362
>gi|50310213|ref|XP_455126.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660335|sp|Q6CLR3.1|DED1_KLULA RecName: Full=ATP-dependent RNA helicase DED1
gi|49644262|emb|CAG97833.1| KLLA0F01034p [Kluyveromyces lactis]
Length = 627
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 23/229 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLL--ASYSSCNNRQTVFASA 59
G L L+E+ L +V+ LV+DE D + + + +++++ + S +NRQT+ SA
Sbjct: 301 GRLTDLLERRYISLANVKYLVLDEADRMLDMGFE-PQIRRIVEGSDMPSVDNRQTLMFSA 359
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P + L + + D V + V + + + + K TLL L+ +
Sbjct: 360 TFPSEIQHLASDFLK-----DYVFLSVGRVGSTSENITQKILYVEDFDKNDTLLDLLAAS 414
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFL-SNSYKGSSDVLLLEEEMNFNSRAASLL 178
+IFV ++K+A ++ L DFL +K ++ + + R +L
Sbjct: 415 NEGLTLIFV-----ETKRAADS-----LTDFLIMEGFKATA----IHGDRTQGERERALS 460
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ G +LV+T +AARG+D+P TH+ NFDLP DY+HR GRTGR
Sbjct: 461 AFKTGRATILVATAVAARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGR 509
>gi|403236869|ref|ZP_10915455.1| DEAD/DEAH box helicase [Bacillus sp. 10403023]
Length = 392
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 132/255 (51%), Gaps = 26/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+ K+ V+ +++DE D L S++ +S+++ ++ + + +RQ +F SA+I
Sbjct: 130 GRIVELIKMKKMKMHEVKTVIVDEADQLV-SNEHLSNVQSIIKA--TLKDRQILFFSATI 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ + + ++V+ V AI+ + H + +C ++ K L ++ ++ P
Sbjct: 187 SEQTEKIAKSL---MNNAEVIRVK-EAIQQENTS--HIYFLCEQRDKIDVLRKIMFTE-P 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I F+ KS + L + + DV +L E N R S+ R
Sbjct: 240 DKAIAFI-----KSLEKVEELEAKLTYNHI--------DVAVLAGEANKQERQQSMKNFR 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G LL++TD+AARG+D+ + T++ +FD P++ Y+HR+GRTGR +K V SI+
Sbjct: 287 AGKIPLLLTTDVAARGLDIQDVTYVIHFDFPKTTSQYVHRSGRTGR---MGKKGVVISIV 343
Query: 242 TSEELFVLQRYENEL 256
+ E L++ +EL
Sbjct: 344 NAREESFLKKMGHEL 358
>gi|422871364|ref|ZP_16917857.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1087]
gi|328945532|gb|EGG39683.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1087]
Length = 523
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 122/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNQIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
D PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 237 DQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|375361121|ref|YP_005129160.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|371567115|emb|CCF03965.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
Length = 511
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 129/263 (49%), Gaps = 26/263 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 147 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPS--DHQTLLFSATM 203
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 204 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 258
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
E I+F ++K+ + + L L + + G ++ R +L +
Sbjct: 259 ELAIVF-----GRTKRRVDELTEALNLRGYAAEGIHG---------DLTQAKRMVALRKF 304
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + +
Sbjct: 305 KEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTF 361
Query: 241 ITSEELFVLQRYENELKFKSEEL 263
IT E +L+ E K K + +
Sbjct: 362 ITPREKNMLRAIEQTTKRKMDRM 384
>gi|312374635|gb|EFR22148.1| hypothetical protein AND_15703 [Anopheles darlingi]
Length = 715
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+++ + + S+ LV+DE D + + + ++K+L +RQTV SA+
Sbjct: 422 GRLNDLVQEGVVNVSSITYLVLDEADRMLDMGFE-PQIRKVLLDIRP--DRQTVMTSATW 478
Query: 62 PQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P R ++H+ IQ D+ VH + CL ++ KY ++ +
Sbjct: 479 PDGVRRLAQSYMHDPIQVYVGTLDLAAVHT--VTQHIECLD-------EEDKYHRIMKFV 529
Query: 117 QSDAPESG-IIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ P+ IIF G K +A + S +L D S G+ + R
Sbjct: 530 KQMEPKDKVIIFCG----KKTRADDLSSEFVLNDIGCQSIHGNREQA---------DREQ 576
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L ++++G +L++TD+A+RG+D+ + TH+ N+D PR+ +Y+HR GRTGR
Sbjct: 577 ALEDIKKGTVRILIATDVASRGLDIEDITHVVNYDFPRNIEEYVHRVGRTGR 628
>gi|345022779|ref|ZP_08786392.1| ATP-dependent RNA helicase [Ornithinibacillus scapharcae TW25]
Length = 490
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 119/266 (44%), Gaps = 24/266 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + + V +V+DE D + N + ++++L S RQT+ SA++
Sbjct: 129 GRLLDHFRRRTIRADIVNTVVLDEADEMLNMGF-IDDIREILKQVPS--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R + + + V V A + + +FV +K K+ TL +L+ P
Sbjct: 186 PKEIRDIATNLMNSPKE-----VKVKAKEMTVENIDQQFVEIPEKYKFDTLTNLLDMQNP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F S K+ F S G ++ R + L + +
Sbjct: 241 ELAIVF----SRTKKRVDEITEGLQARGFRSEGIHG---------DLTQGKRMSVLNKFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + E S I
Sbjct: 288 NGRVDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGRTGE---AISFI 344
Query: 242 TSEELFVLQRYENELKFKSEELTLQT 267
T E+ L+ E K K + + T
Sbjct: 345 TPREMAHLRLIEKVTKSKMKRMVPPT 370
>gi|23098064|ref|NP_691530.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
gi|22776289|dbj|BAC12565.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
Length = 495
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 125/266 (46%), Gaps = 24/266 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + +++ V V+DE D + N + ++++L RQT+ SA++
Sbjct: 129 GRLLDHMRRKTIRIDQVHTAVLDEADEMLNMG-FIDDIREILKGIPE--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R + + ++ V V A + + F+ +K K+ TL + + ++P
Sbjct: 186 PKEIRNIATTLMKEPK-----EVKVKAKEMTVENIDQYFIEIPEKYKFDTLNNHLDINSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E IIF ++KK + + L + Y+ + ++ R + L + +
Sbjct: 241 ELAIIFA-----RTKKRVDEVAEGLQ----ARGYRSEG----IHGDLTQGKRMSVLKKFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
QG +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + S I
Sbjct: 288 QGRVDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKMGEAISFI 344
Query: 242 TSEELFVLQRYENELKFKSEELTLQT 267
T E+ L E K K + + T
Sbjct: 345 TPREMAHLNLIEQTTKSKMKRMAPPT 370
>gi|386391490|ref|ZP_10076271.1| DNA/RNA helicase, superfamily II [Desulfovibrio sp. U5L]
gi|385732368|gb|EIG52566.1| DNA/RNA helicase, superfamily II [Desulfovibrio sp. U5L]
Length = 493
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 128/256 (50%), Gaps = 25/256 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + + ++++ LV+DE D +F+ + +K++L++ S RQT+ SA++
Sbjct: 131 GRLLDHMNQGNVRFDALETLVLDEADHMFDMGF-LPDIKRILSALPS--ERQTLLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L + T +D + V + + PL S + H K LL L++
Sbjct: 188 PPAISGLAH-----ETLTDPITVRIGHMAPL-STVEHAIYPISHTQKAPLLLHLLEEAGK 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+S I+F + +A N L + +K + L+ ++ R ++ R
Sbjct: 242 QSVIVF----TRTKHRAKN-----LAQQLCRSGHKAT----CLQGNLSQRQRQIAMDGFR 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TDIAARGID+ + H+ NFD+P +A Y HR GRTGR ++ + + +
Sbjct: 289 RGSFQVLVATDIAARGIDVSQVGHVVNFDIPDTAEAYTHRIGRTGR---AEHEGQAHTFV 345
Query: 242 TSEELFVLQRYENELK 257
T E++ +++ E+ +K
Sbjct: 346 TGEDMGMVRAIESHMK 361
>gi|392427583|ref|YP_006468577.1| DNA/RNA helicase, superfamily II [Desulfosporosinus acidiphilus
SJ4]
gi|391357546|gb|AFM43245.1| DNA/RNA helicase, superfamily II [Desulfosporosinus acidiphilus
SJ4]
Length = 488
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 123/259 (47%), Gaps = 26/259 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + +L ++++V+DE D + N + ++ +L RQT+ SA++
Sbjct: 129 GRLMDHMRRRTIRLNEIKIVVLDEADEMLNMGF-LEDIETILKEIPEI--RQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + N Q+ + + + + + S + ++ +K+K+ L L+ +P
Sbjct: 186 PKQ---IQNIAQRFMKEPEFIQIKATGVTV--SDIEQHYIEVPEKLKFDVLTRLLDIQSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRAASLLEV 180
E I+F T VD LS K + ++ + R + L +
Sbjct: 241 ELSIVFA--------------RTKRRVDELSEGLNKRGYSAEGIHGDLTQSKRDSVLRQF 286
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G +LV+TD+AARG+D+ TH++NFD+P+ Y+HR GRTGR + + +
Sbjct: 287 KDGTIDVLVATDVAARGLDISGVTHVFNFDIPQDTESYVHRVGRTGR---AGKTGLAITF 343
Query: 241 ITSEELFVLQRYENELKFK 259
+T E+ +L+ E+ +K +
Sbjct: 344 VTPREMGMLRLIESVIKRR 362
>gi|308172326|ref|YP_003919031.1| DEAD/DEAH box helicase [Bacillus amyloliquefaciens DSM 7]
gi|307605190|emb|CBI41561.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens DSM 7]
Length = 511
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 147 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPSEH--QTLLFSATM 203
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 204 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 258
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 259 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 305
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 306 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 362
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 363 TPREKSMLRAIEQTTKRKMDRM 384
>gi|421532550|ref|ZP_15978908.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
STIR-CD-17]
gi|403642219|gb|EJZ03081.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
STIR-CD-17]
Length = 516
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 113/240 (47%), Gaps = 25/240 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHIETLILDEADEMLN----MGFLEDIEAIISRVPEARQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I K+ K D HV + A + + +V + K+ T+ L+ D
Sbjct: 184 MPDPIK----RIGVKFMK-DPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTCLMDVDQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLE 179
PE I+F T LVD L+ K + +++ N R + +
Sbjct: 239 PELSIVF--------------GRTKRLVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T S
Sbjct: 285 FKNDHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVS 344
>gi|384162855|ref|YP_005544234.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens LL3]
gi|328910410|gb|AEB62006.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens LL3]
Length = 480
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 116 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPSEH--QTLLFSATM 172
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 173 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 227
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 228 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 274
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 275 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 331
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 332 TPREKSMLRAIEQTTKRKMDRM 353
>gi|373955865|ref|ZP_09615825.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
18603]
gi|373892465|gb|EHQ28362.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
18603]
Length = 428
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 23/227 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+++ LES+++LV+DE D + + V+ +KK++A RQT+F SA++
Sbjct: 134 GRLLDLVQQKFVHLESLKILVLDEADRMLDMG-FVNDVKKIIAKIPV--KRQTLFFSATM 190
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + L + I K K +V V A + K K L+ +++
Sbjct: 191 PKEIQTLADTILNKPEKVEVTPVSSTA-----DTIQQGIYFVDKNDKKSLLIHILKDKKI 245
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLL-VDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
E+ ++F ++K + L+ V + + G+ + N+R +L
Sbjct: 246 ETALVFT-----RTKHGADKVVKDLIRVGITAEAIHGNK---------SQNARQRALTNF 291
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ +LV+TDIAARGID+ + TH+ N++LP Y+HR GRTGR
Sbjct: 292 KNRSTRILVATDIAARGIDVDDLTHVINYELPNVPETYVHRIGRTGR 338
>gi|228477095|ref|ZP_04061733.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
salivarius SK126]
gi|228251114|gb|EEK10285.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
salivarius SK126]
Length = 528
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 27/229 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL +++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNNIETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + F+ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
D PE I+F ++ L F + G +++ N R +
Sbjct: 237 DQPELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRVIR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ + +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 284 DFKNDQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 332
>gi|386757060|ref|YP_006230276.1| DEAD/DEAH box helicase [Bacillus sp. JS]
gi|384930342|gb|AFI27020.1| DEAD/DEAH box helicase [Bacillus sp. JS]
Length = 511
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 126/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S QT+ SA++
Sbjct: 147 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPS--EHQTLLFSATM 203
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 204 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 258
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 259 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 305
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 306 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 362
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 363 TPREKSMLRAIEQTTKRKMDRM 384
>gi|350264711|ref|YP_004876018.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349597598|gb|AEP85386.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 494
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 130 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPSEH--QTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 187 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 242 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 289 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 345
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 346 TPREKSMLRAIEQTTKRKMDRM 367
>gi|343525265|ref|ZP_08762220.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
gi|343395535|gb|EGV08073.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
Length = 514
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 32/253 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL V+ L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHVETLILDEADEMLN----MGFLEDIEAIISRVPEDRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I+Q K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKQIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASL 177
+ PE I+F T VD L+ K + +++ R L
Sbjct: 237 EQPELSIVF--------------GRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQ 250
+ E+ LQ
Sbjct: 342 --FVAPNEMGYLQ 352
>gi|296332826|ref|ZP_06875286.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305673172|ref|YP_003864844.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296150106|gb|EFG90995.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305411416|gb|ADM36535.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii str. W23]
gi|407956155|dbj|BAM49395.1| ATP-dependent RNA helicase [Bacillus subtilis BEST7613]
gi|407963426|dbj|BAM56665.1| ATP-dependent RNA helicase [Bacillus subtilis BEST7003]
Length = 494
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 126/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S QT+ SA++
Sbjct: 130 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPS--EHQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 187 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 242 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 289 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 345
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 346 TPREKSMLRAIEQTTKRKMDRM 367
>gi|194015931|ref|ZP_03054546.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Bacillus pumilus ATCC 7061]
gi|194012286|gb|EDW21853.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Bacillus pumilus ATCC 7061]
Length = 496
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 127/268 (47%), Gaps = 36/268 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L++V+ +V+DE D + N + ++ +L++ S QT+ SA++
Sbjct: 130 GRLLDHINRRTMRLQNVETVVLDEADEMLNMGF-IEDIESILSNVPS--EHQTLLFSATM 186
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+ N HV V A + S + ++ ++ K+ TL L+
Sbjct: 187 PAPIKRIAERFMTNP----------EHVKVKAKEMTVSNIQQFYLDIHERKKFDTLTRLL 236
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+PE I+F ++K+ + + L L + + G ++ R
Sbjct: 237 DIQSPELSIVF-----GRTKRRVDELTEALNLRGYTAEGIHG---------DLTQAKRMV 282
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+L + ++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR +
Sbjct: 283 ALRKFKEGSIDVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGRTG 339
Query: 236 TVTSIITSEELFVLQRYENELKFKSEEL 263
+ IT E +L+ E K K + +
Sbjct: 340 MAVTFITPREKDMLRAIEQTTKRKMDRM 367
>gi|384158050|ref|YP_005540123.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens TA208]
gi|384167076|ref|YP_005548454.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens XH7]
gi|328552138|gb|AEB22630.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens TA208]
gi|341826355|gb|AEK87606.1| putative ATP-dependent RNA helicase [Bacillus amyloliquefaciens
XH7]
Length = 494
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 130 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPSEH--QTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 187 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 242 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 289 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 345
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 346 TPREKSMLRAIEQTTKRKMDRM 367
>gi|16077525|ref|NP_388339.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
subtilis str. 168]
gi|402774703|ref|YP_006628647.1| ATP-dependent RNA helicase [Bacillus subtilis QB928]
gi|430757089|ref|YP_007210799.1| hypothetical protein A7A1_1597 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|1881268|dbj|BAA19295.1| ydbR [Bacillus subtilis]
gi|402479888|gb|AFQ56397.1| ATP-dependent RNA helicase [Bacillus subtilis QB928]
gi|430021609|gb|AGA22215.1| Hypothetical protein YdbR [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 511
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 126/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S QT+ SA++
Sbjct: 147 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPS--EHQTLLFSATM 203
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 204 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 258
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 259 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 305
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 306 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 362
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 363 TPREKSMLRAIEQTTKRKMDRM 384
>gi|418963292|ref|ZP_13515131.1| DEAD/DEAH box helicase [Streptococcus anginosus subsp. whileyi CCUG
39159]
gi|383343407|gb|EID21591.1| DEAD/DEAH box helicase [Streptococcus anginosus subsp. whileyi CCUG
39159]
Length = 565
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 120/253 (47%), Gaps = 32/253 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL V+ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 175 GRLLDLIKRKALKLNHVETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 230
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I+Q K + HV + A + + ++ + K+ T+ L+
Sbjct: 231 MP-------DAIKQIGVKFMKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 283
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 284 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 329
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 330 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 388
Query: 238 TSIITSEELFVLQ 250
+ E+ LQ
Sbjct: 389 --FVAPNEMGYLQ 399
>gi|373853830|ref|ZP_09596629.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV5]
gi|372473357|gb|EHP33368.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV5]
Length = 539
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 122/253 (48%), Gaps = 25/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L +E+ L+S+++L++DEVD + + + +K+++ C RQT+F SA+
Sbjct: 260 GRLLDHLEQGTLTLDSIEILILDEVDRMLDMGF-LPDVKRIV---QQCPRERQTLFFSAT 315
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P L + W D V + + + + H F K+ L+ L++
Sbjct: 316 LPPELAQLSS-----WALRDPVQIKIGQRRSPAETVSHAFYPVVASQKFDLLIELLKRTE 370
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRAASLLE 179
+S IIF T + D +++ + V ++ + + R +L
Sbjct: 371 FKSIIIFT--------------RTKMGADRIAHRLQREQHTVGVIHSDRSQRERVEALEG 416
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TDIAARG+D+ +H+ N+D+P +A DY+HR GRTGR + + +T+ +
Sbjct: 417 FKSGKFEVLVATDIAARGLDIAGVSHVINYDVPENAEDYVHRIGRTGRANATGDAFTLVT 476
Query: 240 IITSEELFVLQRY 252
+ ++RY
Sbjct: 477 EDDVRDARSIERY 489
>gi|322373478|ref|ZP_08048014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
C150]
gi|321278520|gb|EFX55589.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
C150]
Length = 528
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 27/229 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL +++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNNIETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + F+ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
D PE I+F ++ L F + G +++ N R +
Sbjct: 237 DQPELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRVIR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ + +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 284 DFKNDQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 332
>gi|317153822|ref|YP_004121870.1| DEAD/DEAH box helicase [Desulfovibrio aespoeensis Aspo-2]
gi|316944073|gb|ADU63124.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis
Aspo-2]
Length = 421
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 128/265 (48%), Gaps = 25/265 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+++ +L+ V LV+DE D + + + LK++L+ + RQ + SA++
Sbjct: 131 GRLVALLQQGDIRLDHVDTLVLDEADRMLDMGF-MPDLKRILSRLPA--KRQNLLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R L + I D V V+ P+ S + F +K L +L+ S
Sbjct: 188 PADIRKLADTI-----LVDPARVQVSNTVPVES-VTQTFYPVADHLKGGLLEALLGSMER 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
ES ++F ++K + L + +S ++ L+ M+ N R +L R
Sbjct: 242 ESVLVFT-----RTKHRAKNLAKRLGLRGMSATF--------LQGNMSQNQRQRALDGFR 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G ++V+TDIAARGID +H+ NFD P +A Y HR GRTGR + E S+I
Sbjct: 289 CGDFEIMVATDIAARGIDCDRISHVINFDAPDTAEAYTHRIGRTGRAGRTGEAL---SLI 345
Query: 242 TSEELFVLQRYENELKFKSEELTLQ 266
T E+ V++ E L+ ++ T++
Sbjct: 346 TREDHLVVRDIERVLRRSVDQRTVE 370
>gi|192360552|ref|YP_001981465.1| ATP-dependent RNA helicase RhlB [Cellvibrio japonicus Ueda107]
gi|190686717|gb|ACE84395.1| ATP-dependent RNA helicase RhlB [Cellvibrio japonicus Ueda107]
Length = 439
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 19/213 (8%)
Query: 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQ 74
L+ ++VLVIDE D + + + +++++ +RQT+F SA+ +HN +QQ
Sbjct: 168 LDQLEVLVIDEADRMLDMGF-IPQVRQIVRQTPHREDRQTLFFSATFTDD---VHNLVQQ 223
Query: 75 KWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEK 134
WT V + + + + + + KY L +LIQ + ES I+F + E
Sbjct: 224 -WTYKPVT-IEIEPESVANARVDQHVYLVSTEEKYTLLYNLIQQEHAESMIVFANRRDE- 280
Query: 135 SKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA 194
L L + K LL E+ N R ++L + G +LV+TD+A
Sbjct: 281 --------CRDLYEKLLRHGIKAG----LLSGEITQNKRVSTLDAFKNGDIKVLVATDVA 328
Query: 195 ARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
RGI + +H+ NF LP DY+HR GRTGR
Sbjct: 329 GRGIHISGISHVVNFTLPEEPEDYVHRIGRTGR 361
>gi|167769379|ref|ZP_02441432.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
17241]
gi|167668347|gb|EDS12477.1| DEAD/DEAH box helicase [Anaerotruncus colihominis DSM 17241]
Length = 439
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 117/250 (46%), Gaps = 21/250 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI + I L SV V V+DE D + + + +++++ N RQT+F SA++
Sbjct: 152 GRLNDLIGQGIIDLSSVSVFVLDEADRMLDMGF-IHDVERVINHLP--NKRQTLFFSATM 208
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + +H C +D V V V + + R K K + L+ L++ +
Sbjct: 209 P--KAIMHLC---DRILTDPVKVAVTPVSSPVEAIEQRLYFVDKPNKRRLLIYLLEDVSI 263
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
S ++F + + A + + K + + + + +R +L +
Sbjct: 264 VSALVFTFTKHGADRVAR---------ELVKAGIKAQA----IHGDKSQGARQRALSAFK 310
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TDIAARGID+ E +H++N+DLP Y+HR GRTGR + SI+
Sbjct: 311 NGDIRVLVATDIAARGIDIDELSHVFNYDLPNIPETYVHRIGRTGRAGLGGIAISFCSIV 370
Query: 242 TSEELFVLQR 251
E L +++
Sbjct: 371 EMENLHAIEK 380
>gi|300853611|ref|YP_003778595.1| ATP-dependent RNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300433726|gb|ADK13493.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
13528]
Length = 496
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 123/267 (46%), Gaps = 24/267 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G IEK L+ +Q L+IDE D + N + +K +L NR T+ SA+I
Sbjct: 146 GRTLDHIEKDTLSLKKIQYLIIDEADEMLNMG-FIDQVKAVLDKLPK--NRVTLLFSATI 202
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
PQ L C ++ ++V ++A P+ + ++ + K+ L L+ + P
Sbjct: 203 PQE--ILKLC---AAYMNNPINVEIDAEDPVINRINQIYYQIEAYKKFDLLNKLVYTQRP 257
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
ES +IF ++KK N L + S G +L E ++ R +
Sbjct: 258 ESSMIFC-----RTKK--NVEDLVLQMKGKGYSCSGLHGGMLQSERIDVMKR------FK 304
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G LV TD+AARGID+ THI N+D+P Y+HR GRTGR + + T + +
Sbjct: 305 RGEFIFLVCTDVAARGIDVENITHIINYDIPMEKESYVHRIGRTGR---AGKSGTAITFV 361
Query: 242 TSEELFVLQRYENELKFKSEELTLQTQ 268
T +E L+ E E+ T+ ++
Sbjct: 362 TPKEYRFLEEIEKFFNLTIEKGTIPSK 388
>gi|391229094|ref|ZP_10265300.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
gi|391218755|gb|EIP97175.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
Length = 539
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 122/253 (48%), Gaps = 25/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L +E+ L+S+++L++DEVD + + + +K+++ C RQT+F SA+
Sbjct: 260 GRLLDHLEQGTLTLDSIEILILDEVDRMLDMGF-LPDVKRIV---QQCPRERQTLFFSAT 315
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P L + W D V + + + + H F K+ L+ L++
Sbjct: 316 LPPELAQLSS-----WALRDPVQIKIGQRRSPAETVSHAFYPVVASQKFDLLIELLKRTE 370
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRAASLLE 179
+S IIF T + D +++ + V ++ + + R +L
Sbjct: 371 FKSIIIFT--------------RTKMGADRIAHRLQREQHTVGVIHSDRSQRERVEALEG 416
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TDIAARG+D+ +H+ N+D+P +A DY+HR GRTGR + + +T+ +
Sbjct: 417 FKSGKFEVLVATDIAARGLDIAGVSHVINYDVPENAEDYVHRIGRTGRANATGDAFTLVT 476
Query: 240 IITSEELFVLQRY 252
+ ++RY
Sbjct: 477 EDDVRDARSIERY 489
>gi|387784682|ref|YP_006070765.1| ATP-dependent RNA helicase [Streptococcus salivarius JIM8777]
gi|338745564|emb|CCB95930.1| ATP-dependent RNA helicase [Streptococcus salivarius JIM8777]
Length = 528
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 27/229 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL +++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNNIETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + F+ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIKVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
D PE I+F ++ L F + G +++ N R +
Sbjct: 237 DQPELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRVIR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ + +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 284 DFKNDQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 332
>gi|376297009|ref|YP_005168239.1| DEAD/DEAH box helicase [Desulfovibrio desulfuricans ND132]
gi|323459571|gb|EGB15436.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
ND132]
Length = 369
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 123/268 (45%), Gaps = 32/268 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +L+ L + LV+DE D + + + +K++LA + RQ + SA++
Sbjct: 131 GRLVRLLNNGSVSLTHIDTLVLDEADRMLDMGF-MPDIKRILAKLPA--RRQNLLFSATM 187
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
PQ R+ N + T V V +P+ S + H F K + L L+
Sbjct: 188 PQDIRKLAENILNDPKT------VQVANTQPVES-VEHSFYATENNRKSELLTKLLDRAE 240
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLE 179
+S ++F ++ KA N L+ GS + L+ M+ N R +L
Sbjct: 241 HQSVLVF----TKTKHKAKN----------LARKLAGSGYNATFLQGNMSQNQRQRALDG 286
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R G ++V+TDIAARGID +H+ NFD+P + Y HR GRTGR S S
Sbjct: 287 FRDGSYDIMVATDIAARGIDCERISHVINFDMPDTVETYTHRIGRTGRAGRSGH---AVS 343
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
++T E+ ++ E ++ K LT QT
Sbjct: 344 LVTGEDKTQVRDIERVMRVK---LTRQT 368
>gi|312863656|ref|ZP_07723894.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
vestibularis F0396]
gi|311101192|gb|EFQ59397.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
vestibularis F0396]
Length = 529
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 27/229 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL +++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNNIETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + F+ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
D PE I+F ++ L F + G +++ N R +
Sbjct: 237 DQPELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRVIR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ + +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 284 DFKNDQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 332
>gi|348161390|gb|AEP68013.1| vasa [Sebastes schlegelii]
Length = 649
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 22/229 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L +Q LV+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 348 GRLLDMIGRGKVGLSKLQYLVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 406
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + K+D + + V + S + FV K K + LL + +
Sbjct: 407 TYPEDIQRLA----ADFLKTDYLFLAVGVVGGACSDVEQTFVQVTKFSKREQLLDFLNTV 462
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
E ++FV ++K+ + +T L + L+ S G + R +L
Sbjct: 463 GAERTMVFV-----ETKRQADFIATYLCQEKVLTTSIHGDREQ---------REREQALA 508
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ R G +LV+T +AARG+D+P+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 509 DFRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGR 557
>gi|421452972|ref|ZP_15902328.1| ATP-dependent RNA helicase [Streptococcus salivarius K12]
gi|400181281|gb|EJO15548.1| ATP-dependent RNA helicase [Streptococcus salivarius K12]
Length = 525
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 27/229 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL +++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNNIETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + F+ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
D PE I+F ++ L F + G +++ N R +
Sbjct: 237 DQPELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRVIR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ + +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 284 DFKNDQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 332
>gi|394994548|ref|ZP_10387262.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. 916]
gi|393804648|gb|EJD66053.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. 916]
Length = 494
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 130 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPSEH--QTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 187 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 242 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 289 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 345
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 346 TPREKSMLRAIEQTTKRKMDRM 367
>gi|390955309|ref|YP_006419067.1| DNA/RNA helicase [Aequorivita sublithincola DSM 14238]
gi|390421295|gb|AFL82052.1| DNA/RNA helicase, superfamily II [Aequorivita sublithincola DSM
14238]
Length = 450
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 124/256 (48%), Gaps = 26/256 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI ++ L++V L++DE D + + K + L ++A R+T+ +A++
Sbjct: 132 GRLVDLINRNAIDLKNVAYLILDEADEMVTALK--TDLDSIIAEIP--KGRRTLLFTATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L Q + V+H+ + + H+F++ K + LL + S
Sbjct: 188 PGTIKQL----VQNYMSKHVLHIEADMETMGHQGIDHQFMVVEPIEKLEVLLHFLSSKEG 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
E GIIF K+K A N + L ++ F S + GS + + M +
Sbjct: 244 ERGIIFC-----KTKAAVNKLAKNLAINKFSSGAIHGSLTQPIRDRVMG---------QF 289
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R G +LV+TD+AARG+D+ E +++ N+ LP + Y+HR+GRT R + +I
Sbjct: 290 RDGHIDILVATDLAARGLDVKEISYVINYHLPDTYETYVHRSGRTAR---AGAAGLSVTI 346
Query: 241 ITSEELFVLQRYENEL 256
+ EE+F + +E EL
Sbjct: 347 LQQEEVFEIPEFEEEL 362
>gi|340399426|ref|YP_004728451.1| putative ATP-dependent RNA helicase [Streptococcus salivarius
CCHSS3]
gi|387760754|ref|YP_006067731.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
salivarius 57.I]
gi|418018420|ref|ZP_12657976.1| putative ATP-dependent RNA helicase [Streptococcus salivarius M18]
gi|338743419|emb|CCB93927.1| putative ATP-dependent RNA helicase exp9 (Exported protein 9)
[Streptococcus salivarius CCHSS3]
gi|339291521|gb|AEJ52868.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
salivarius 57.I]
gi|345527269|gb|EGX30580.1| putative ATP-dependent RNA helicase [Streptococcus salivarius M18]
Length = 528
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 27/229 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL +++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNNIETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + F+ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
D PE I+F ++ L F + G +++ N R +
Sbjct: 237 DQPELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRVIR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ + +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 284 DFKNDQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 332
>gi|322516252|ref|ZP_08069184.1| ATP-dependent RNA helicase DeaD, partial [Streptococcus
vestibularis ATCC 49124]
gi|322125316|gb|EFX96681.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC
49124]
Length = 528
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 27/229 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL +++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNNIETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + F+ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
D PE I+F ++ L F + G +++ N R +
Sbjct: 237 DQPELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRVIR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ + +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 284 DFKNDQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 332
>gi|254421014|ref|ZP_05034738.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
gi|196187191|gb|EDX82167.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
Length = 545
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 109/231 (47%), Gaps = 28/231 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L L E+ L V+++V+DE D + + + + KL + RQT+F SA
Sbjct: 132 GRLLDLFERGKMLLTGVEIMVVDEADRMLDMGFIPDIERIFKL-----TPPRRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHH--RFVICGKKMKYQTLLSLIQ 117
++P L + T+ + + A + + R K K L +L+
Sbjct: 187 TMPPEITRLTAAFLKDPTRIEASRPAMTAD----TITQYIVRIPTSDPKAKRAALRALMS 242
Query: 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAAS 176
+GI+F +SE VD ++ S K D + +++ + R +
Sbjct: 243 RTDVRNGIVFCNRKSE--------------VDIVAKSLKTHGFDAAAIHGDLDQSHRTKT 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + R G +LV++D+AARG+D+P+ +H++N+D+ A DY+HR GRTGR
Sbjct: 289 LADFRSGALKILVASDVAARGLDIPDVSHVFNYDVSHHADDYVHRIGRTGR 339
>gi|449093157|ref|YP_007425648.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis XF-1]
gi|449027072|gb|AGE62311.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis XF-1]
Length = 474
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 110 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPSEH--QTLLFSATM 166
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 167 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 221
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 222 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 268
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 269 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 325
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 326 TPREKSMLRAIEQTTKRKMDRM 347
>gi|398307568|ref|ZP_10511154.1| ATP-dependent RNA helicase; cold shock [Bacillus vallismortis
DV1-F-3]
Length = 494
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 130 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IEDIESILSNVPSEH--QTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 187 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 242 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 289 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 345
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 346 TPREKSMLRAIEQTTKRKMDRM 367
>gi|221308280|ref|ZP_03590127.1| hypothetical protein Bsubs1_02593 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312602|ref|ZP_03594407.1| hypothetical protein BsubsN3_02569 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317526|ref|ZP_03598820.1| hypothetical protein BsubsJ_02533 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321802|ref|ZP_03603096.1| hypothetical protein BsubsS_02604 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321314132|ref|YP_004206419.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
gi|384174130|ref|YP_005555515.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|428277910|ref|YP_005559645.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
BEST195]
gi|452916520|ref|ZP_21965143.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus subtilis MB73/2]
gi|134039178|sp|P96614.2|CSHA_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|291482867|dbj|BAI83942.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
BEST195]
gi|320020406|gb|ADV95392.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5]
gi|349593354|gb|AEP89541.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|443906300|emb|CAB12265.2| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
subtilis str. 168]
gi|452114660|gb|EME05059.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus subtilis MB73/2]
Length = 494
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 126/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S QT+ SA++
Sbjct: 130 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPS--EHQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 187 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 242 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 289 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 345
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 346 TPREKSMLRAIEQTTKRKMDRM 367
>gi|319404344|emb|CBI77941.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498]
Length = 466
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 118/249 (47%), Gaps = 39/249 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + N V + K+ + RQT+F SA
Sbjct: 136 GRLLDHFERGKLLLVGVEILVIDEADRMLNMGFIPDVERICKV-----TPFTRQTLFFSA 190
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++ ++FLH+ V++ + + R V G K K L
Sbjct: 191 TMAPEIAQLTKQFLHSP----------VYIEITEASSTAKTITQRLVKSGSKSCDKKAVL 240
Query: 113 LSLIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LIQ++ E + IIF + + S+ L +L K + V L +M+
Sbjct: 241 KELIQNEGDELKNAIIFCNRKKDISE----------LFQYL---IKHNFSVGTLHGDMDQ 287
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+SR +L + LL+++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 288 HSRTNTLASFKNNKFILLIASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKR 347
Query: 231 SDEKWTVTS 239
S + +T+ +
Sbjct: 348 SGKAFTIVT 356
>gi|77409647|ref|ZP_00786319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae COH1]
gi|339301744|ref|ZP_08650830.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
gi|417005047|ref|ZP_11943640.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae FSL
S3-026]
gi|421146787|ref|ZP_15606490.1| DEAD/DEAH box helicase [Streptococcus agalactiae GB00112]
gi|77171747|gb|EAO74944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae COH1]
gi|319744779|gb|EFV97119.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
gi|341576860|gb|EGS27268.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae FSL
S3-026]
gi|401686494|gb|EJS82471.1| DEAD/DEAH box helicase [Streptococcus agalactiae GB00112]
Length = 528
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 23/239 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHIETLILDEADEMLN----MGFLEDIEAIISRVPEARQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I K+ K D HV + A + + +V + K+ T+ L+ D
Sbjct: 184 MPDPIK----RIGVKFMK-DPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLMDVDQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F ++ L F + G +++ N R + +
Sbjct: 239 PELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRVIRDF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T S
Sbjct: 286 KNDHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVS 344
>gi|440226777|ref|YP_007333868.1| ATP-dependent RNA helicase RhlE [Rhizobium tropici CIAT 899]
gi|440038288|gb|AGB71322.1| ATP-dependent RNA helicase RhlE [Rhizobium tropici CIAT 899]
Length = 505
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 113/243 (46%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + +V++ VIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRLLDHFERGKLLMSAVEIFVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKM-KYQTLLSLIQ 117
++P + L + Q + +V A + RFV GK K TL L++
Sbjct: 187 TMPPEIQKLADRFLQNPERVEVAKPASTA-----KTVTQRFVASHGKDYEKRATLRDLVR 241
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ IIF + + + D + + V L +M+ SR
Sbjct: 242 AQTDLKNAIIFCNRKKD-------------VADLFRSLERHGFSVGALHGDMDQRSRTTM 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+DLP+ H++NFD+P + DY+HR GRTGR S +T
Sbjct: 289 LQNFRDGQIQLLVASDVAARGLDLPDVGHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFT 348
Query: 237 VTS 239
+ +
Sbjct: 349 IVT 351
>gi|418034442|ref|ZP_12672914.1| ATP-dependent RNA helicase (cold shock) [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|351468695|gb|EHA28904.1| ATP-dependent RNA helicase (cold shock) [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 480
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 116 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPSEH--QTLLFSATM 172
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 173 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 227
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 228 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 274
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 275 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 331
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 332 TPREKSMLRAIEQTTKRKMDRM 353
>gi|347735337|ref|ZP_08868231.1| ATP-dependent RNA helicase RhlE [Azospirillum amazonense Y2]
gi|346921472|gb|EGY02178.1| ATP-dependent RNA helicase RhlE [Azospirillum amazonense Y2]
Length = 387
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 117/248 (47%), Gaps = 22/248 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ + +L+ V+VLV+DE D + + + SL+K++A + NRQT+F SA++
Sbjct: 134 GRLLDLMTQGHVRLDKVEVLVLDEADRMLDMGF-IHSLRKIMAKLPA--NRQTLFFSATM 190
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L + + D + V V + + + + K L+ LI+ DA
Sbjct: 191 PADVSELAGKMLR-----DPLRVEVTPVSTTAERIEQKVIFVPAAEKRHVLVDLIRGDAG 245
Query: 122 -ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
+ I+F ++K N S L + + + + N+R +L
Sbjct: 246 MQRSIVFT-----RTKHGANRVSAQL--------EQAGIEAAAIHGNKSQNARQKALDGF 292
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R G +LV+TDIAARGID+ TH+ NF+LP Y+HR GRT R S ++ +
Sbjct: 293 RAGTVRVLVATDIAARGIDVDGVTHVVNFELPNEPETYVHRIGRTARAGASGVAVSLCTA 352
Query: 241 ITSEELFV 248
E +++
Sbjct: 353 DGDERIYL 360
>gi|323143171|ref|ZP_08077868.1| ATP-dependent RNA helicase SrmB [Succinatimonas hippei YIT 12066]
gi|322417058|gb|EFY07695.1| ATP-dependent RNA helicase SrmB [Succinatimonas hippei YIT 12066]
Length = 455
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 128/275 (46%), Gaps = 33/275 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L + + K F +V++LVIDE D + + V+S+ + L+ N QT+ SA
Sbjct: 130 GRLLEFLRKDWFDPSTVEILVIDEADRMLDMGFRDDVASIVRELS-----NRYQTMLFSA 184
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNA----IKPLPSCLHHR-FVICGKKMKYQTLLS 114
++ F N ++ +D + V + A + LP L R + + K++ L
Sbjct: 185 TL---EGFGINDFARQ-VLNDPIEVRLGAGGENDEKLPEFLSSRAYFANDSEQKFKILKH 240
Query: 115 LIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
L+ + S IIFV +S L D + L+ E++ R
Sbjct: 241 LLTTVQGRS-IIFVKTKSR-------------LADVSGKLRRSGFAFASLQGELSQTERK 286
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEK 234
A+L +LV+TD+A+RG+DLP+ TH+YN+DLP SA Y+HR+GRT R + K
Sbjct: 287 AALRRFADSSADILVATDVASRGLDLPDVTHVYNYDLPTSAAVYVHRSGRTAR---AGAK 343
Query: 235 WTVTSIITSEELFVLQRYENELKFKSEELTLQTQC 269
V SI+ +L LQ E E T++ C
Sbjct: 344 GVVISIVEGADLEKLQAIERYTDRVIERRTIKGIC 378
>gi|389574285|ref|ZP_10164350.1| ATP-dependent RNA helicase [Bacillus sp. M 2-6]
gi|388426047|gb|EIL83867.1| ATP-dependent RNA helicase [Bacillus sp. M 2-6]
Length = 516
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 128/268 (47%), Gaps = 36/268 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L++V+ +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 147 GRLLDHINRRTMRLQNVETVVLDEADEMLNMGF-IEDIESILSNVPSEH--QTLLFSATM 203
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+ N HV V A + S + ++ ++ K+ TL L+
Sbjct: 204 PAPIKRIAERFMTNP----------EHVKVKAKEMTVSNIQQFYLDIHERKKFDTLTRLL 253
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+PE I+F ++K+ + + L L + + G ++ R
Sbjct: 254 DIQSPELSIVF-----GRTKRRVDELTEALNLRGYTAEGIHG---------DLTQAKRMV 299
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+L + ++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR +
Sbjct: 300 ALRKFKEGSIDVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGRTG 356
Query: 236 TVTSIITSEELFVLQRYENELKFKSEEL 263
+ IT E +L+ E K K + +
Sbjct: 357 MAMTFITPREKDMLRAIEQTTKRKMDRM 384
>gi|443633956|ref|ZP_21118132.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443346152|gb|ELS60213.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 474
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 110 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPSEH--QTLLFSATM 166
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 167 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 221
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 222 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 268
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 269 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 325
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 326 TPREKSMLRAIEQTTKRKMDRM 347
>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
Length = 522
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 114/253 (45%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KLE+V+ LV+DE D + N + ++ +++ S RQT+ SA++
Sbjct: 128 GRMLDHINRHTLKLETVETLVLDEADEMLNMG-FLEDIESIISKVPST--RQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + + Q HV + A + + +V K+ + L+ P
Sbjct: 185 PPAIKSIGVKFMQNPE-----HVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E IIF G + + T YK + +++ R + L +
Sbjct: 240 ELTIIF-GRTKRRVDELARGLET--------RGYKAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 NGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMSYLHTIEN 356
>gi|384262623|ref|YP_005417810.1| DEAD/DEAH box helicase [Rhodospirillum photometricum DSM 122]
gi|378403724|emb|CCG08840.1| DEAD/DEAH box helicase [Rhodospirillum photometricum DSM 122]
Length = 506
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 111/245 (45%), Gaps = 35/245 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVD------FLFNSSKQVSSLKKLLASYSSCNNRQTV 55
G L L E+ L V+VLVIDE D F+ + + VS L K+ RQT+
Sbjct: 187 GRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVSLLPKM---------RQTL 237
Query: 56 FASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSL 115
F SA++ + R L + + V V + + V+ K ++L L
Sbjct: 238 FFSATMDKEIRRLADAFLMNPKE-----VRVEQTQKAADTVEQGLVVVSHHDKRESLRHL 292
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRA 174
++ + + IF + + VD L S K D + L +M R
Sbjct: 293 LRREDVANAFIFCNRKRD--------------VDILHRSLSKHGFDAVALHGDMPQYVRT 338
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEK 234
L + ++G LLV +D+AARGID+ + +H+YNFD+P DY+HR GRTGR +
Sbjct: 339 ERLEQFKKGEARLLVCSDVAARGIDISDVSHVYNFDVPTHPEDYIHRIGRTGRAGRLGKA 398
Query: 235 WTVTS 239
+T+ +
Sbjct: 399 YTIAT 403
>gi|157691224|ref|YP_001485686.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
gi|157679982|gb|ABV61126.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
Length = 513
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 127/268 (47%), Gaps = 36/268 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L++V+ +V+DE D + N + ++ +L++ S QT+ SA++
Sbjct: 147 GRLLDHINRRTMRLQNVETVVLDEADEMLNMGF-IEDIESILSNVPS--EHQTLLFSATM 203
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+ N HV V A + S + ++ ++ K+ TL L+
Sbjct: 204 PAPIKRIAERFMTNP----------EHVKVKAKEMTVSNIQQFYLDIHERKKFDTLTRLL 253
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+PE I+F ++K+ + + L L + + G ++ R
Sbjct: 254 DIQSPELSIVF-----GRTKRRVDELTEALNLRGYTAEGIHG---------DLTQAKRMV 299
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+L + ++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR +
Sbjct: 300 ALRKFKEGSIDVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGRTG 356
Query: 236 TVTSIITSEELFVLQRYENELKFKSEEL 263
+ IT E +L+ E K K + +
Sbjct: 357 MAMTFITPREKDMLRAIEQTTKRKMDRM 384
>gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
Length = 487
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 128/259 (49%), Gaps = 29/259 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+E+ E ++ V+DE D + S + +KK+L S RQTV SA++
Sbjct: 130 GRVIDLLERGKLSFEELRWAVLDEADEML-SMGFIDDVKKIL--RQSPKTRQTVCFSATM 186
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHR-FVICGKKMKYQTLLSLIQSD 119
P R + N + +D +++ + + P + ++I K + LL +++
Sbjct: 187 PPAIRDLVENFL------NDPINITIKQPQVTPDRIAQEVYMIPRGWSKTKALLPILEMA 240
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRAASLL 178
PES IIFV ++K+ + + L+ S + Y G ++N N R +
Sbjct: 241 NPESAIIFV-----RTKRTASELTNELVEAGQSADEYHG---------DLNQNQREKLVR 286
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ G ++V+TDIAARG+D+ +H+ NFDLP + Y+HR GRTGR + + T
Sbjct: 287 RFKDGKIKMIVATDIAARGLDVENLSHVINFDLPDNTESYIHRIGRTGR---AGKTGTAI 343
Query: 239 SIITSEELFVLQRYENELK 257
+++ + +L++ E +K
Sbjct: 344 ALVEPSDRRLLRQIERRVK 362
>gi|194853742|ref|XP_001968213.1| GG24746 [Drosophila erecta]
gi|190660080|gb|EDV57272.1| GG24746 [Drosophila erecta]
Length = 542
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 128/262 (48%), Gaps = 25/262 (9%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS---KQVSSLKKL---LASYSSCNNRQT 54
+G+L +L+ I+++E V+ LV+DE D L + + K L++ L Q
Sbjct: 248 LGALSKLVTTGIYRMEQVRHLVLDEADTLLDDTFTDKLTYFLRRFPFHLVQKEDAGT-QM 306
Query: 55 VFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLS 114
+ ASA++P + R + + T +VV H++ + P + +F+ K + TLLS
Sbjct: 307 ILASATMPTNTREILQKVIDVDTIREVVSPHLHRLMP---HVTQKFLRMSKADRPATLLS 363
Query: 115 LIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSR 173
L++ D + + V N +T+ V FL+NS + L L +M R
Sbjct: 364 LVKHDLAKRRPLIV---------FSNKSTTSDFVSIFLNNS---GVNCLNLNGDMLMKIR 411
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ + G +L +TD+ +RG+D H+ NFD P DY+HR GR GR D
Sbjct: 412 LGRFEQFQNGHCDVLSTTDVGSRGLDTTRARHVVNFDFPLHVSDYIHRCGRIGRVGNMD- 470
Query: 234 KWTVTSIITS-EELFVLQRYEN 254
K VT++I+S E+ V+QR E+
Sbjct: 471 KALVTNLISSRREIDVVQRIEH 492
>gi|410594336|ref|YP_006951063.1| ATP-dependent RNA helicase exp9 [Streptococcus agalactiae SA20-06]
gi|410517975|gb|AFV72119.1| ATP-dependent RNA helicase exp9 [Streptococcus agalactiae SA20-06]
Length = 516
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 23/239 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHIETLILDEADEMLN----MGFLEDIEAIISRVPEARQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I K+ K D HV + A + + +V + K+ T+ L+ D
Sbjct: 184 MPDPIK----RIGVKFMK-DPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLMDVDQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F ++ L F + G +++ N R + +
Sbjct: 239 PELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRVIRDF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T S
Sbjct: 286 KNDHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVS 344
>gi|407980113|ref|ZP_11160911.1| ATP-dependent RNA helicase [Bacillus sp. HYC-10]
gi|407413167|gb|EKF34895.1| ATP-dependent RNA helicase [Bacillus sp. HYC-10]
Length = 496
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 128/268 (47%), Gaps = 36/268 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L++V+ +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 130 GRLLDHINRRTMRLQNVETVVLDEADEMLNMGF-IEDIESILSNVPSEH--QTLLFSATM 186
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+ N HV V A + S + ++ ++ K+ TL L+
Sbjct: 187 PAPIKRIAERFMTNP----------EHVKVKAKEMTVSNIQQFYLDIHERKKFDTLTRLL 236
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+PE I+F ++K+ + + L L + + G ++ R
Sbjct: 237 DIQSPELSIVF-----GRTKRRVDELTEALNLRGYTAEGIHG---------DLTQAKRMV 282
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+L + ++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR +
Sbjct: 283 ALRKFKEGSIDVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGRTG 339
Query: 236 TVTSIITSEELFVLQRYENELKFKSEEL 263
+ IT E +L+ E K K + +
Sbjct: 340 MAMTFITPREKDMLRAIEQTTKRKMDRM 367
>gi|326790482|ref|YP_004308303.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
gi|326541246|gb|ADZ83105.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
5427]
Length = 470
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 118/231 (51%), Gaps = 31/231 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS- 60
G + L+ K ++Q +++DE D L + + Q +++KK+L Y +RQ SAS
Sbjct: 132 GRILDLMTKKKITASTIQTVILDEADHLLDQN-QANTIKKML--YLLPKDRQICLCSASM 188
Query: 61 ----IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
I + F+ + + + + V++ + H ++ ++ K+ L L+
Sbjct: 189 SPTAIEAVKTFMTHPVIVRTAEQTVLNPRIK----------HFCLVSEQREKFDMLRKLL 238
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ + +IFV + ++ TT LV+ L + G S V + ++ +R A+
Sbjct: 239 VATHTQRALIFVSQNTD----------TTTLVEKLK--HHGHS-VATISGKLTKEARKAA 285
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L R G LL+S+D++ARG+D+P+ TH+ +FD P +A +YLHRAGR+ R
Sbjct: 286 LTAFRSGKVKLLISSDLSARGLDVPDITHVIHFDFPLTAHEYLHRAGRSAR 336
>gi|422415356|ref|ZP_16492313.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
J1-023]
gi|313624489|gb|EFR94491.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
J1-023]
Length = 516
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 114/232 (49%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL++V+ LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 129 GRILDHINRRTLKLDNVETLVLDEADEMLNMGF-IDDIETILKEVPA--ERQTLLFSATM 185
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ +++ + + L + FV +K K+ L L+
Sbjct: 186 PDPIRRIGERFMHS--------PELIRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 235
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE I+F ++K+ + S L + +++ G ++ R +
Sbjct: 236 DVQAPELAIVF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 281
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 282 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 333
>gi|257486807|ref|ZP_05640848.1| ATP-dependent RNA helicase SrmB, partial [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
Length = 410
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNR-QTVFAS 58
G L + + L+ V+VLV+DE D + + S+ V L C R QT+ S
Sbjct: 95 GRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERL------AGECAGREQTMLFS 148
Query: 59 ASIPQH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSL 115
A+ R + ++ D H+ VN++ L S H+ + + K Q L L
Sbjct: 149 ATTGGAGLREMIGKVLK------DPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWL 202
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ ++ + IIF ++ + G ++ YK +L + + R A
Sbjct: 203 LANETYQKAIIFTNTKAMADRLYGR---------LVALEYK----AFVLHGDKDQKDRKA 249
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++ ++QGG ++V+TD+AARG+D+ + NFD+PRS DY+HR GRTGR
Sbjct: 250 AIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGR 301
>gi|422824031|ref|ZP_16872219.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405]
gi|422858936|ref|ZP_16905586.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057]
gi|324993358|gb|EGC25278.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405]
gi|327458716|gb|EGF05064.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057]
Length = 523
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 119/257 (46%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNQIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKEPNHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASL 177
+ PE I+F T VD L+ K S + +++ R L
Sbjct: 237 EQPELSIVF--------------GRTKRRVDELTRGLKISGFRAEGIHGDLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|195470346|ref|XP_002087469.1| GE17089 [Drosophila yakuba]
gi|194173570|gb|EDW87181.1| GE17089 [Drosophila yakuba]
Length = 542
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 124/262 (47%), Gaps = 25/262 (9%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS---KQVSSLKKL---LASYSSCNNRQT 54
+G+L +L+ I+++E V+ LV+DE D L + + K L++ L Q
Sbjct: 248 LGALSKLVTTGIYRMEQVRHLVLDEADTLLDDTFTDKLTYFLRRFPFHLVQKEDAGT-QM 306
Query: 55 VFASASIPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLL 113
+ ASA++P + R LH I T +VV H++ + P + +F+ K + TLL
Sbjct: 307 ILASATMPTNTREILHKVIDVD-TIREVVSPHLHRLMP---HVTQKFLRMSKADRPATLL 362
Query: 114 SLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNS 172
SL++ D + + V N +T+ V FL+NS + L L +M
Sbjct: 363 SLVKQDIVKRRPLIV---------FSNKSTTSDFVSIFLNNS---GVNCLNLNGDMLMKI 410
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSD 232
R + + G +L +TD+ +RG+D H+ NFD P DY+HR GR GR D
Sbjct: 411 RLGRFEQFQNGHCDVLSTTDVGSRGLDTTRARHVVNFDFPLHVSDYIHRCGRIGRVGNMD 470
Query: 233 EKWTVTSIITSEELFVLQRYEN 254
+ I + E+ V+QR E+
Sbjct: 471 KALVSNLISSRREIDVVQRIEH 492
>gi|357639882|ref|ZP_09137755.1| DEAD/DEAH box helicase [Streptococcus urinalis 2285-97]
gi|418417504|ref|ZP_12990699.1| hypothetical protein HMPREF9318_01447 [Streptococcus urinalis
FB127-CNA-2]
gi|357588336|gb|EHJ57744.1| DEAD/DEAH box helicase [Streptococcus urinalis 2285-97]
gi|410871423|gb|EKS19371.1| hypothetical protein HMPREF9318_01447 [Streptococcus urinalis
FB127-CNA-2]
Length = 533
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 118/243 (48%), Gaps = 31/243 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ V+VL++DE D + N + L+ + A S + RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLKDVKVLILDEADEMLN----MGFLEDIEAIISQVPSERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKK-MKYQTLLSLIQ 117
+P + I+Q K + H+ + A K L + +F I K+ K+ T+ L+
Sbjct: 184 MP-------DPIKQIGIKFMKNPEHIKIKA-KELTNVNVEQFYIRVKEHEKFDTMTRLMD 235
Query: 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAAS 176
D PE I+F T VD L+ K + +++ N R
Sbjct: 236 VDQPELSIVF--------------GRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRV 281
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ + + +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 282 IRDFKNDQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT 341
Query: 237 VTS 239
S
Sbjct: 342 FVS 344
>gi|264679533|ref|YP_003279440.1| hypothetical protein CtCNB1_3398 [Comamonas testosteroni CNB-2]
gi|262210046|gb|ACY34144.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 431
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 111/240 (46%), Gaps = 40/240 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+E + +L +VQ LV+DE D L + L ++LA RQT+ SA+
Sbjct: 137 GRLLDLVEHNAVRLNAVQHLVLDEADRLLDQGF-AEELNRVLALLP--GKRQTLLFSATF 193
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPL-----PSCLHHRFVICGKKMKYQT 111
PQ+ R LH D V V V+A + P + R + + Q
Sbjct: 194 PQNVEALATRLLH----------DPVRVQVDADQAAEHSASPENISQRAIAVDGPRRTQL 243
Query: 112 LLSLIQS--DAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEE 167
L L++ + PE ++FV ++ + +L D L YK +
Sbjct: 244 LRHLVKQGENQPEWERALVFVAKRH----------TAEMLADKL---YKAGIYATTFHGD 290
Query: 168 MNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
M+ +R L + + LL++TD+AARGID+ + + N+DLPRS DY+HR GRTGR
Sbjct: 291 MSQGARKDVLDQFKAKRWQLLITTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGR 350
>gi|384048659|ref|YP_005496676.1| ATP-dependent RNA helicase [Bacillus megaterium WSH-002]
gi|345446350|gb|AEN91367.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
megaterium WSH-002]
Length = 481
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 117/260 (45%), Gaps = 30/260 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + IEK LE ++ LVIDE D + N QV ++ + L S R T+ SA
Sbjct: 131 GRVLDHIEKETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQHLPS-----ERVTMLFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDV-VHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
++P+ L +K+ K V V + N + S + H + + K++ L +
Sbjct: 186 TLPEDIEEL----SRKYMKKPVDVEIKANGL--TTSTIDHSVITVENERKFELLKDVTTV 239
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ P+S IIF Q + TLL D Y + M R +
Sbjct: 240 ENPDSCIIFCRTQEQ---------VNTLLDDLDDFGYPCDK----IHGAMVQEDRFEVMN 286
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ ++G LV+TD+AARGID+ TH+ N+DLP Y+HR GRTGR + +K
Sbjct: 287 DFKKGKFRYLVATDVAARGIDIDNITHVINYDLPLEKESYVHRTGRTGR---AGKKGKAI 343
Query: 239 SIITSEELFVLQRYENELKF 258
+ +T E +L E + F
Sbjct: 344 TFVTPYEERMLSEIEEYIGF 363
>gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
gi|336236996|ref|YP_004589612.1| DEAD/DEAH box helicase [Geobacillus thermoglucosidasius C56-YS93]
gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
gi|335363851|gb|AEH49531.1| DEAD/DEAH box helicase domain protein [Geobacillus
thermoglucosidasius C56-YS93]
Length = 465
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + LE+V +V+DE D + N + ++ +L++ RQT+ SA++
Sbjct: 129 GRIIDHINRKTLHLENVHTVVLDEADEMLNMGF-IDDIEAILSNVPE--KRQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + ++ + +V V + +P+ + + KK K+ L L+ AP
Sbjct: 186 PEP---IRRIAERFMNEPQIVKVKAKEMT-VPNIQQYYLEVQEKK-KFDILTRLLDIQAP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G +++ R + L + +
Sbjct: 241 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLSQAKRLSVLRKFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + +
Sbjct: 288 EGSIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKTGVAMTFV 344
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E+ L E K K E +
Sbjct: 345 TPREIGQLHNIERTTKRKMERM 366
>gi|166014135|gb|ABY77970.1| vasa [Thunnus orientalis]
Length = 644
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L ++ LV+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 344 GRLLDMIGRGKVGLSKLRYLVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 402
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + + + K+D + + V + S + F+ K K + LL L+++
Sbjct: 403 TYPEDIQRMA----ADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTT 458
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV E ++A + FL ++ + E+ R +L +
Sbjct: 459 GTERTMVFV----ETKRQA------DFIATFLCQEKVPTTSIHGDREQ---REREQALAD 505
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 506 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGR 553
>gi|451348181|ref|YP_007446812.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens IT-45]
gi|449851939|gb|AGF28931.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens IT-45]
Length = 494
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 127/259 (49%), Gaps = 26/259 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S + QT+ SA++
Sbjct: 130 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPS--DHQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 187 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
E I+F ++K+ + + L L + + G ++ R +L +
Sbjct: 242 ELAIVF-----GRTKRRVDELTEALNLRGYAAEGIHG---------DLTQAKRMVALRKF 287
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + +
Sbjct: 288 KEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTF 344
Query: 241 ITSEELFVLQRYENELKFK 259
IT E +L+ E K K
Sbjct: 345 ITPREKNMLRAIEQTTKRK 363
>gi|116252340|ref|YP_768178.1| cold-shock DEAD-box protein A [Rhizobium leguminosarum bv. viciae
3841]
gi|115256988|emb|CAK08082.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
[Rhizobium leguminosarum bv. viciae 3841]
Length = 521
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 124/262 (47%), Gaps = 33/262 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 138 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 192
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKMKYQTLL-SLIQ 117
++P + L + Q + +V A + + RFV GK + + +L L++
Sbjct: 193 TMPSEIQKLADRFLQNPERIEVAKPASAA-----ATVTQRFVASHGKDYEKRAVLRELVR 247
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ IIF + + + D + + V L +M+ SR +
Sbjct: 248 AQTELKNAIIFCNRKKD-------------VADLFRSLERHGFSVGALHGDMDQRSRTMT 294
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S +T
Sbjct: 295 LQSFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFT 354
Query: 237 V-----TSIITSEELFVLQRYE 253
+ T + + E + Q+ E
Sbjct: 355 LVTKRDTKFVDAIEKLIGQKVE 376
>gi|374997699|ref|YP_004973198.1| DNA/RNA helicase [Desulfosporosinus orientis DSM 765]
gi|357216065|gb|AET70683.1| DNA/RNA helicase, superfamily II [Desulfosporosinus orientis DSM
765]
Length = 500
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 129/260 (49%), Gaps = 28/260 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + +L +++LV+DE D + N + ++ +L RQT+ SA++
Sbjct: 129 GRLMDHMRRKTIRLNDIKILVLDEADEMLNMGF-LDDIETILKEVP--EERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + N + + ++ + + S + +V +++K+ L ++ +P
Sbjct: 186 P---RQIQNIAHRFMQEPQLISIKATGVTV--SDIEQHYVEVTERLKFDVLSRILDIQSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSN--SYKGSSDVLLLEEEMNFNSRAASLLE 179
E I+F ++KK VD L+ S +G S + ++ N R + L +
Sbjct: 241 ELSIVFA-----RTKKR---------VDELAEALSKRGYS-AEGIHGDLTQNKRDSVLRQ 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH++NFD+P+ Y+HR GRTGR + + +
Sbjct: 286 FKDGTIEVLVATDVAARGLDISGVTHVFNFDIPQDPESYVHRVGRTGR---AGKSGLAIT 342
Query: 240 IITSEELFVLQRYENELKFK 259
++T E+ +L+ E+ +K +
Sbjct: 343 LVTPREIGMLRLIESVIKRR 362
>gi|333394485|ref|ZP_08476304.1| putative ATP-dependent RNA helicase [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420145287|ref|ZP_14652757.1| ATP-dependent RNA helicase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398403063|gb|EJN56338.1| ATP-dependent RNA helicase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 515
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 120/272 (44%), Gaps = 36/272 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L+ VQVLV+DE D + + + ++K++ + RQT+ SA+I
Sbjct: 128 GRLQDHINRRTIRLDHVQVLVLDEADEMLDMGF-LEDIEKIVQQVP--DTRQTLLFSATI 184
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H D V + A + L FV + K+ + L
Sbjct: 185 PAAIRKIADRFMH----------DPKMVQIKAKELTADLLDQYFVQTKEFEKFDVMTRLF 234
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAA 175
PE I+F T VD LS + + + +++ R +
Sbjct: 235 DVQQPELTIVF--------------GRTKRRVDELSKGLRARGYNAEGIHGDLSQQKRMS 280
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRT R + K
Sbjct: 281 VLRSFKAGRLDILVATDVAARGLDISGVTHVYNYDVPQDPDSYVHRVGRTAR---AGHKG 337
Query: 236 TVTSIITSEELFVLQRYENELKFKSEELTLQT 267
T + +T E+ L+ E + K + L T
Sbjct: 338 TSITFVTPNEMGYLRTIEKLTRLKMQPLKAPT 369
>gi|409122137|ref|ZP_11221532.1| DEAD/DEAH box helicase [Gillisia sp. CBA3202]
Length = 446
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 124/256 (48%), Gaps = 26/256 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI++ L V LV+DE D + S K L +++A R+T+ SA++
Sbjct: 132 GRLIDLIKRKAIDLSKVNYLVLDEADEMVTSLK--DGLDEIVAELP--KKRRTLLFSAAL 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L Q + V+ + N ++H FV+ K + L+ + S
Sbjct: 188 PGTIKQL----IQNYMSKHVIQISANMETVGNQEINHEFVVVEPIEKLEVLMHFLSSKDG 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
E GIIF K+K A N + L ++ F S + GS ++ R + +
Sbjct: 244 ERGIIFC-----KTKAAVNKLAKNLAINKFSSGALHGS---------LSQPIRDRIMKQF 289
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R+G +LV+TD+AARGID+ E +++ N+ LP Y+HR+GRT R + K ++
Sbjct: 290 REGHINILVATDLAARGIDVKEISYVVNYHLPDVYEVYVHRSGRTAR---AGAKGYALTV 346
Query: 241 ITSEELFVLQRYENEL 256
I +EE+ + +++EL
Sbjct: 347 IQNEEIPDIAEFQDEL 362
>gi|315302253|ref|ZP_07873161.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
F6-596]
gi|313629376|gb|EFR97601.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
F6-596]
Length = 526
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 114/232 (49%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL++V+ LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 131 GRILDHINRRTLKLDNVETLVLDEADEMLNMGF-IDDIETILKEVPA--ERQTLLFSATM 187
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ +++ + + L + FV +K K+ L L+
Sbjct: 188 PDPIRRIGERFMHS--------PELIRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 237
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE I+F ++K+ + S L + +++ G ++ R +
Sbjct: 238 DVQAPELAIVF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 283
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 284 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 335
>gi|289628314|ref|ZP_06461268.1| ATP-dependent RNA helicase SrmB, partial [Pseudomonas syringae pv.
aesculi str. NCPPB 3681]
Length = 413
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNR-QTVFAS 58
G L + + L+ V+VLV+DE D + + S+ V L C R QT+ S
Sbjct: 98 GRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERL------AGECAGREQTMLFS 151
Query: 59 ASIPQH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSL 115
A+ R + ++ D H+ VN++ L S H+ + + K Q L L
Sbjct: 152 ATTGGAGLREMIGKVLK------DPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWL 205
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ ++ + IIF ++ + G ++ YK +L + + R A
Sbjct: 206 LANETYQKAIIFTNTKAMADRLYGR---------LVALEYK----AFVLHGDKDQKDRKA 252
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++ ++QGG ++V+TD+AARG+D+ + NFD+PRS DY+HR GRTGR
Sbjct: 253 AIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGR 304
>gi|422634060|ref|ZP_16699144.1| helicase, partial [Pseudomonas syringae Cit 7]
gi|330955253|gb|EGH55513.1| helicase [Pseudomonas syringae Cit 7]
Length = 372
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNR-QTVFAS 58
G L + + L+ V+VLV+DE D + + S+ V L C R QT+ S
Sbjct: 57 GRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERL------AGECAGREQTMLFS 110
Query: 59 ASIPQH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSL 115
A+ R + ++ D H+ VN++ L S H+ + + K Q L L
Sbjct: 111 ATTGGAGLREMIGKVLK------DPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWL 164
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ ++ + IIF ++ + G ++ YK +L + + R A
Sbjct: 165 LANETYQKAIIFTNTKAMADRLYGR---------LVALEYK----AFVLHGDKDQKDRKA 211
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++ ++QGG ++V+TD+AARG+D+ + NFD+PRS DY+HR GRTGR
Sbjct: 212 AIDRLKQGGAKVMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGR 263
>gi|126651493|ref|ZP_01723697.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
gi|126591746|gb|EAZ85842.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
Length = 513
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 118/256 (46%), Gaps = 24/256 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KLE VQ LV+DE D + N + + +L + + RQT+ SA++
Sbjct: 129 GRIIDHINRRTLKLEDVQTLVLDEADEMLNMGF-IDDINSILENVPA--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + + D V + A + + FV ++ K+ L L+ P
Sbjct: 186 PPAIRKIAETFMR-----DPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLNVHQP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E IIF G + + A S + +L+ G +++ R + L + +
Sbjct: 241 ELAIIF-GRTKRRVDELAQALS---IRGYLAEGIHG---------DLSQAKRISVLRQFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+ +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + +
Sbjct: 288 ENKIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKSGLAVTFV 344
Query: 242 TSEELFVLQRYENELK 257
T E+ L+ E K
Sbjct: 345 TPREMGYLRIVEETTK 360
>gi|414078512|ref|YP_006997830.1| DEAD/DEAH box helicase [Anabaena sp. 90]
gi|413971928|gb|AFW96017.1| DEAD/DEAH box helicase domain-containing protein [Anabaena sp. 90]
Length = 521
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 133/269 (49%), Gaps = 25/269 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+++ KL+ V+ V+DE D + S + ++++L+ + N RQT SA++
Sbjct: 130 GRVIDLLDRGNLKLDQVKWFVLDEADEML-SMGFIDDVERILSQ--APNERQTALFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHH-RFVICGKKMKYQTLLSLIQSDA 120
P R L N K+ S V V V K P+ ++ ++I K + L +++ +
Sbjct: 187 PPSIRMLVN----KFLNSPVT-VTVEQPKAAPNKINQVAYMIPRHWTKAKALQPILEMED 241
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE+ +IFV + ++ S VD Y G +++ +R L+
Sbjct: 242 PETALIFVRTRRTAAELTSQLQSAGHSVD----EYHG---------DLSQQARERLLIRF 288
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R +V+TDIAARG+D+ + +H+ NFDLP S Y+HR GRTGR + ++ T S+
Sbjct: 289 RNRQVRWVVATDIAARGLDVDQLSHVINFDLPDSVETYVHRIGRTGR---AGKEGTAISL 345
Query: 241 ITSEELFVLQRYENELKFKSEELTLQTQC 269
+ S E Q +E + + L++ T+
Sbjct: 346 VQSFERRKQQAFERHNRQTWQILSIPTKA 374
>gi|320582192|gb|EFW96410.1| ATP-dependent RNA helicase, putative [Ogataea parapolymorpha DL-1]
Length = 428
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 23/270 (8%)
Query: 2 GSLCQLI---EKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58
G L +I E L+ V+ LV+DE D L S L+ + + N RQT+ +
Sbjct: 129 GRLAHIIMENEDECRGLKRVKYLVLDEADRLLTDS-FTDHLQTCFEALPNSNKRQTLLFT 187
Query: 59 ASIPQHRRFLHNCIQQKWTKSDVVHV--HVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
A++ R L + + +H +V+ +K +PS L +V+ +K L +++
Sbjct: 188 ATVTDSVRALKDRPVAPGKQPVFLHELDNVDTVK-IPSTLRLLYVLAPVVVKESMLHNIL 246
Query: 117 QS-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ D ES I +SE ++ +L L + ++ L EM + R
Sbjct: 247 TNEDYKESTAIVFVNRSETAE---------ILRRLLRHLEVTTTS---LHSEMPQSERTN 294
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
SL R G +LV+TD+A+RG+D+P + NFD+PR DY+HR GRT R + K
Sbjct: 295 SLHRFRAGAARVLVATDLASRGLDIPSVELVINFDIPRDPDDYVHRVGRTAR---AGRKG 351
Query: 236 TVTSIITSEELFVLQRYENELKFKSEELTL 265
S++T +L + E+ + K EEL L
Sbjct: 352 DAISMVTPNDLSRILAIEDRVGVKMEELPL 381
>gi|291165179|gb|ADD81194.1| vasa [Auxis thazard]
Length = 627
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L ++ LV+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 330 GRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 388
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + + + K+D + + V + S + F+ K K + LL L+++
Sbjct: 389 TYPEDIQRMA----ADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTT 444
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV E ++A + FL ++ + E+ R +L +
Sbjct: 445 GSERTMVFV----ETKRQA------DFIATFLCQEKVPTTSIHGDREQ---REREQALAD 491
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 492 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGR 539
>gi|402572174|ref|YP_006621517.1| DNA/RNA helicase [Desulfosporosinus meridiei DSM 13257]
gi|402253371|gb|AFQ43646.1| DNA/RNA helicase, superfamily II [Desulfosporosinus meridiei DSM
13257]
Length = 386
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 122/258 (47%), Gaps = 34/258 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K ++V+ +V+DE D L + + S++ K + + + +F++
Sbjct: 131 GRILELIQKKKIVAQTVKTIVLDEADRLLDENN--SAIVKGVIKTTLSRTQLLLFSATLS 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
PQ ++ ++ +V+ V I P+ H + + ++ K + L LI+ P
Sbjct: 189 PQTQQKASTLLKT----PEVIRV-TETIMIAPTV-EHMYFLAEQRDKIEALRKLIRIIIP 242
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS-----RAAS 176
G+IF+ + E K L+ Y G LE E F R +
Sbjct: 243 TRGLIFINKSEEIEK------------TVLTLKYHG------LEAEGIFGGAKKAERKKA 284
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ + R G LLV++DIAARG+D+ THI+N DL YLHR GRTGR + K
Sbjct: 285 MDDFRSGKSSLLVASDIAARGLDIKGITHIFNLDLSEDPQLYLHRVGRTGR---AGNKGI 341
Query: 237 VTSIITSEELFVLQRYEN 254
SI+ +E+ VL++ E+
Sbjct: 342 AISIVNPQEVQVLRKLES 359
>gi|289676925|ref|ZP_06497815.1| ATP-dependent RNA helicase SrmB, partial [Pseudomonas syringae pv.
syringae FF5]
Length = 382
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNR-QTVFAS 58
G L + + L+ V+VLV+DE D + + S+ V L C R QT+ S
Sbjct: 67 GRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERL------AGECAGREQTMLFS 120
Query: 59 ASIPQH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSL 115
A+ R + ++ D H+ VN++ L S H+ + + K Q L L
Sbjct: 121 ATTGGAGLREMIGKVLK------DPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWL 174
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ ++ + IIF ++ + G ++ YK +L + + R A
Sbjct: 175 LANETYQKAIIFTNTKAMADRLYGR---------LVALEYK----AFVLHGDKDQKDRKA 221
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++ ++QGG ++V+TD+AARG+D+ + NFD+PRS DY+HR GRTGR
Sbjct: 222 AIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGR 273
>gi|398827259|ref|ZP_10585473.1| DNA/RNA helicase, superfamily II [Phyllobacterium sp. YR531]
gi|398220105|gb|EJN06565.1| DNA/RNA helicase, superfamily II [Phyllobacterium sp. YR531]
Length = 502
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 123/265 (46%), Gaps = 39/265 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L +V +LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRLLDHFERGKLLLSAVDILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTL 112
++P +FLH+ ++ + K+ + + V GKK K L
Sbjct: 187 TMPPEITKLTEQFLHSPVRIEVAKAATTA----------KTVEQKLVKSGKKDWEKRAIL 236
Query: 113 LSLI--QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LI ++D ++ IIF + + S + + K D L +M+
Sbjct: 237 RDLIRAEADGLKNAIIFCNRKKDVS-------------ELFRSLVKHEFDAGALHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R L + +LV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR
Sbjct: 284 RARTTMLANFKDNKLKILVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTSIITSEELFVLQRYENE 255
S + +T+ + ++ L +++ E
Sbjct: 344 SGKAFTIVTQADAKYLAAIEKLIGE 368
>gi|320546379|ref|ZP_08040695.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
gi|320448989|gb|EFW89716.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
Length = 530
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 23/227 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KLE V+ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLEHVETLILDEADEMLN----MGFLEDIEAIISRVPETRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P+ + + Q HV V A + + ++ ++ K+ T+ L+ D
Sbjct: 184 MPEAIKRIGVKFMQNPE-----HVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVDQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F ++K+ + + L + Y+ + +++ R L +
Sbjct: 239 PELSIVF-----GRTKRRVDELTRGLKL----RGYRAEG----IHGDLDQGKRLRVLRDF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 286 KNDNIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 332
>gi|336392377|ref|ZP_08573776.1| putative ATP-dependent RNA helicase [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 515
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 120/272 (44%), Gaps = 36/272 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L+ VQVLV+DE D + + + ++K++ + RQT+ SA+I
Sbjct: 128 GRLQDHINRRTIRLDHVQVLVLDEADEMLDMGF-LEDIEKIVQQVP--DTRQTLLFSATI 184
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H D V + A + L FV + K+ + L
Sbjct: 185 PAAIRKIADRFMH----------DPKMVQIKAKELTADLLDQYFVQTKEFEKFDVMTRLF 234
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAA 175
PE I+F T VD LS + + + +++ R +
Sbjct: 235 DVQQPELTIVF--------------GRTKRRVDELSKGLRARGYNAEGIHGDLSQQKRMS 280
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRT R + K
Sbjct: 281 VLRSFKAGRLDILVATDVAARGLDISGVTHVYNYDVPQDPDSYVHRVGRTAR---AGHKG 337
Query: 236 TVTSIITSEELFVLQRYENELKFKSEELTLQT 267
T + +T E+ L+ E + K + L T
Sbjct: 338 TSITFVTPNEMGYLRTIEKLTRLKMQPLKAPT 369
>gi|375007039|ref|YP_004980670.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|359285886|gb|AEV17570.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 467
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +LE V +V+DE D + N + ++ +L+ + RQT+ SA++
Sbjct: 129 GRIIDHINRGTLRLEHVHTVVLDEADEMLNMGF-IEDIEAILSHVPA--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ + ++V V + +P+ + + KK K+ L L+ AP
Sbjct: 186 PDP---IRRIAERFMNEPELVKVKAKEMT-VPNIQQYYLEVHEKK-KFDILTRLLDIQAP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G +++ R + L + +
Sbjct: 241 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLSQAKRLSVLRKFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + +
Sbjct: 288 EGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKTGVAMTFV 344
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E+ L E K K E +
Sbjct: 345 TPREIGQLHHIERTTKRKMERM 366
>gi|86211175|gb|ABC87271.1| vasa-like protein [Macrobrachium rosenbergii]
Length = 710
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 116/237 (48%), Gaps = 38/237 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I++ L ++ LV+DE D + + + +++L+AS NRQT+ SA
Sbjct: 414 GRLLDVIQRGWIGLTKLRYLVLDEADRMLDMGFE-PDMRRLVASPGMPPKENRQTLLFSA 472
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ PQ + L + K+D + + V + S + FV K K + LL +++
Sbjct: 473 TYPQDIQKL----AADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKYSKREQLLDFLKTI 528
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS------- 172
E ++FV E ++A DF++ L +EE+ S
Sbjct: 529 GNERTMVFV----ETKRQA----------DFIAT--------FLCQEELPTTSIHGDREQ 566
Query: 173 --RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R +L + + G +LV+T +AARG+D+PE H+ NFDLP++ +Y+HR GRTGR
Sbjct: 567 REREQALADFKAGKCPILVATSVAARGLDIPEVQHVVNFDLPKNIDEYVHRIGRTGR 623
>gi|197105174|ref|YP_002130551.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
zucineum HLK1]
gi|196478594|gb|ACG78122.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
zucineum HLK1]
Length = 513
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 120/252 (47%), Gaps = 32/252 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L E+ + VQ++V+DE D + + + L+++ + +QT+F SA++
Sbjct: 132 GRLLDHFERGKLLMTGVQIMVVDEADRMLDMG-FIPDLERIFKLTPA--KKQTLFFSATM 188
Query: 62 PQH-----RRFLHNCIQQKWTK-SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSL 115
P ++FL++ ++ + ++ + + +PS K K L L
Sbjct: 189 PPEITRLTKQFLNDPVRIEASRPATTAETITQYLVRIPSA--------DPKAKRTALREL 240
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRA 174
I +GI+F ++E VD ++ S K D + +++ +R
Sbjct: 241 IGRAEINNGIVFCNRKTE--------------VDIVAKSLKKHGFDAAAIHGDLDQATRM 286
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEK 234
+L R G LL ++D+AARG+D+P +H++NFD+P A DY+HR GRTGR + E
Sbjct: 287 RTLESFRNGELKLLCASDVAARGLDIPAVSHVFNFDVPHHADDYVHRIGRTGRAGRTGEA 346
Query: 235 WTVTSIITSEEL 246
+ + + S+ L
Sbjct: 347 FMIVTPADSKNL 358
>gi|92113747|ref|YP_573675.1| DEAD/DEAH box helicase [Chromohalobacter salexigens DSM 3043]
gi|91796837|gb|ABE58976.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
DSM 3043]
Length = 424
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 114/253 (45%), Gaps = 22/253 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L EK L +VLV+DE D + S + +K+++ RQT SA+
Sbjct: 178 GRLLDFHEKRDVDLTQTEVLVLDEADRML-SMGFIPDVKRIVRHTPKAEERQTFLFSATF 236
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
Q L N +WT D HV + + + R + K + L++L+ +
Sbjct: 237 SQDILNLAN----QWTH-DAAHVEIEVSLENAANIDQRVYLVSDSDKQRLLVNLLNQENM 291
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F GN L+ + S K +V +L ++ N+R +L + R
Sbjct: 292 ERVIVF-----------GN--RRDLVRNLDSELRKAGINVAMLSGDVPQNTRITTLDKFR 338
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+A RGI + + +H+ N+ LP DY+HR GRTGR + + S +
Sbjct: 339 NGEVDVLVATDVAGRGIHIDDVSHVVNYTLPEDPEDYVHRIGRTGR---AGAEGVSISFV 395
Query: 242 TSEELFVLQRYEN 254
E+ F L E+
Sbjct: 396 GEEDAFALPGIES 408
>gi|302383278|ref|YP_003819101.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
gi|302193906|gb|ADL01478.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
ATCC 15264]
Length = 521
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 122/269 (45%), Gaps = 31/269 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L L E+ L V+++V+DE D + + + + KL + RQT+F SA
Sbjct: 132 GRLLDLFERGKMMLNGVELMVVDEADRMLDMGFIPDIERIFKL-----TPPKRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHH--RFVICGKKMKYQTLLSLIQ 117
++P L + T+ + + A + + R K K L L+
Sbjct: 187 TMPPEITRLTQAFLKDPTRIEASRPAMTAE----TITQYLVRIPSSDPKAKRAALRELMA 242
Query: 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAAS 176
+GI+F +SE VD ++ S K D + +++ + R +
Sbjct: 243 RADVRNGIVFCNRKSE--------------VDVVAKSLKQHGFDAAPIHGDLDQSLRTKT 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + R G +LV++D+AARG+D+P+ +H++N+D+ A DY+HR GRTGR + +
Sbjct: 289 LADFRSGALKILVASDVAARGLDIPDVSHVFNYDVSHHADDYVHRIGRTGR---AGKLGQ 345
Query: 237 VTSIITSEELFVLQRYENELKFKSEELTL 265
I+T + L + +K EEL L
Sbjct: 346 AFMIVTPADDKSLDKVMKLIKMSPEELVL 374
>gi|395782436|ref|ZP_10462833.1| hypothetical protein MCY_01391 [Bartonella rattimassiliensis 15908]
gi|395418690|gb|EJF85008.1| hypothetical protein MCY_01391 [Bartonella rattimassiliensis 15908]
Length = 478
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 108/239 (45%), Gaps = 27/239 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L L+ + L L++DE D + + V + KLL RQT SA
Sbjct: 157 GRLKDLVHEKCVDLSQTHFLILDEADRMLDMGFIHDVKQISKLLN-----QKRQTALFSA 211
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P+ L C+ K +V A++ + + K L L+ +
Sbjct: 212 TMPKEVAVLAKCLLNDPVKIEVAPQGTTAVE-----IRQKLYCVPTSEKKDILSKLLTNP 266
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLL-VDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
A S I+F ++K +A + L + +L + G+ + +R ++L
Sbjct: 267 AFSSSIVFT-----RTKHGADAVTRHLAKIGYLVATIHGNK---------SQGARQSALK 312
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
R+G +LV+TDIAARGID+P +H+ N+DLP A Y+HR GRTGR S E T+
Sbjct: 313 AFREGAVQILVATDIAARGIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEALTL 371
>gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
gi|81675946|sp|Q5L3G9.1|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
Length = 467
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +LE V +V+DE D + N + ++ +L+ + RQT+ SA++
Sbjct: 129 GRIIDHINRGTLRLEHVHTVVLDEADEMLNMGF-IEDIEAILSHVPA--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ + ++V V + +P+ + + KK K+ L L+ AP
Sbjct: 186 PDP---IRRIAERFMNEPELVKVKAKEMT-VPNIQQYYLEVHEKK-KFDILTRLLDIQAP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G +++ R + L + +
Sbjct: 241 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLSQAKRLSVLRKFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + +
Sbjct: 288 EGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKTGVAMTFV 344
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E+ L E K K E +
Sbjct: 345 TPREIGQLHHIERTTKRKMERM 366
>gi|326802990|ref|YP_004320808.1| delta 1-pyrroline-5-carboxylate dehydrogenase domain-containing
protein [Aerococcus urinae ACS-120-V-Col10a]
gi|326651469|gb|AEA01652.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
ACS-120-V-Col10a]
Length = 508
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 125/254 (49%), Gaps = 26/254 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+++ + L ++ LV+DE D + N + ++ ++ + S NRQT+ SA++
Sbjct: 128 GRLIDLMKRKVLNLNFIETLVLDEADEMLNMGF-IEDIETIIRATPS--NRQTLLFSATM 184
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P+ +R + +Q D V V + A + + F C + K+ L I
Sbjct: 185 PKEIQRIGEHFMQ------DPVTVKIEAKEMTADTIDQYFTKCHDREKFDLLTRFIDVSH 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
+ I+F ++K+ + S L+ Y+ + +++ R++ + +
Sbjct: 239 AKLAIVFA-----RTKRRVDEVSRGLI----ERGYQAEG----IHGDLSQEKRSSIMKDF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + +
Sbjct: 286 KDGRLEILVATDVAARGLDISNVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSITF 342
Query: 241 ITSEELFVLQRYEN 254
+++ E+ L+ EN
Sbjct: 343 VSNHEMGYLRTIEN 356
>gi|410452638|ref|ZP_11306602.1| ATP-dependent RNA helicase [Bacillus bataviensis LMG 21833]
gi|409934120|gb|EKN71036.1| ATP-dependent RNA helicase [Bacillus bataviensis LMG 21833]
Length = 496
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V +++DE D + N + ++ +LAS + RQT+ SA++
Sbjct: 129 GRVLDHINRKTMRLDTVNTVILDEADEMLNMG-FIEDIESILASTPA--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ +V V + +PS + ++ ++ K+ L L+ +P
Sbjct: 186 PGP---IQRMAERFMKDPQIVRVKTKELT-MPSIEQY-YLEVQERNKFDVLTRLLDIQSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
E I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 241 ELAIVF-----GRTKRRVDELSEALTLRGYTAEGIHG---------DLTQAKRMSVLRKF 286
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K +
Sbjct: 287 KEGTIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIALTF 343
Query: 241 ITSEELFVLQRYENELKFKSEELTLQT 267
IT E L E K K E++ T
Sbjct: 344 ITPREKSYLAVVERTTKHKMEKMKAPT 370
>gi|422616661|ref|ZP_16685366.1| helicase [Pseudomonas syringae pv. japonica str. M301072]
gi|330896875|gb|EGH28465.1| helicase [Pseudomonas syringae pv. japonica str. M301072]
Length = 445
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNR-QTVFAS 58
G L + + L+ V+VLV+DE D + + S+ V L C R QT+ S
Sbjct: 130 GRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERL------AGGCAGREQTMLFS 183
Query: 59 ASIPQH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSL 115
A+ R + ++ D H+ VN++ L S H+ + + K Q L L
Sbjct: 184 ATTGGAGLREMIGKVLK------DPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWL 237
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ ++ + IIF ++ + G ++ YK +L + + R A
Sbjct: 238 LANETYQKAIIFTNTKAMADRLYGR---------LVALEYK----AFVLHGDKDQKDRKA 284
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++ ++QGG ++V+TD+AARG+D+ + NFD+PRS DY+HR GRTGR
Sbjct: 285 AIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGR 336
>gi|195437568|ref|XP_002066712.1| GK24632 [Drosophila willistoni]
gi|194162797|gb|EDW77698.1| GK24632 [Drosophila willistoni]
Length = 524
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 129/263 (49%), Gaps = 23/263 (8%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS---KQVSSLKKLLASYSSCNNRQTV-- 55
+G+L +L+ I+++E V+ +V+DE D + + S K LK+ + ++ TV
Sbjct: 234 LGALSKLVTTGIYRMEQVRHVVLDEADTMLDDSFTDKLTYFLKRFPFHLNHLGDKNTVGT 293
Query: 56 ---FASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTL 112
ASA++P + R + I T +VV H++ + P + +F+ K + L
Sbjct: 294 QLVLASATLPTNTREILQRIIDVDTIREVVSPHLHHLMP---HVQQKFLRITKADRPANL 350
Query: 113 LSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172
LSL++ D + + V S K+ + ++ FL+N + L L +M
Sbjct: 351 LSLVKQDMSKKRPVIVF-----SNKSVTSDYVSI---FLNNM---GVNCLNLNGDMLMKI 399
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSD 232
R + + G +L +TD+ +RG+D H+ NFD P DY+HR GR GR
Sbjct: 400 RLGRFEQFQTGECDILSTTDVGSRGLDTTRARHVINFDFPLHVSDYIHRCGRIGRVGNVM 459
Query: 233 EKWTVTSIITS-EELFVLQRYEN 254
+K VT++I+S E+ V+QR E+
Sbjct: 460 QKCLVTNLISSRREIEVVQRIEH 482
>gi|187736504|ref|YP_001878616.1| DEAD/DEAH box helicase [Akkermansia muciniphila ATCC BAA-835]
gi|187426556|gb|ACD05835.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
BAA-835]
Length = 400
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 22/253 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + V+ LV+DEVD + + + + + + RQT+F SA++
Sbjct: 127 GRLVDHFYRCTMRFGEVKALVLDEVDRMLDMG--FLPIVRKIVNLCPWEGRQTLFFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P KW +D V + A + + + + H F + + LL+L++
Sbjct: 185 PPVIAGF-----AKWCLTDPAEVTI-ARREVAATISHAFYPVALDQRDELLLALLKGTDF 238
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
S +IF +++K +A L + Y+G +V ++ ++ R +L +
Sbjct: 239 RSVMIFT-----RTRKEADAVCGMLK----HHGYRG--EVAVMHSDIPQKERMEALKGFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARGID+ TH+ N+ +P +A DY+HR GRTGR S + +T I+
Sbjct: 288 SGKYDILVATDVAARGIDISGVTHVINYRVPENAEDYVHRIGRTGRAEASGDAFT---IM 344
Query: 242 TSEELFVLQRYEN 254
T++EL EN
Sbjct: 345 TADELDFAAAVEN 357
>gi|157150549|ref|YP_001450886.1| DEAD/DEAH box helicase [Streptococcus gordonii str. Challis substr.
CH1]
gi|157075343|gb|ABV10026.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
gordonii str. Challis substr. CH1]
Length = 523
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 123/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDQIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 237 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|242280538|ref|YP_002992667.1| DEAD/DEAH box helicase [Desulfovibrio salexigens DSM 2638]
gi|242123432|gb|ACS81128.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
2638]
Length = 493
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 123/265 (46%), Gaps = 25/265 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ + + KL+ V LV+DE D + + + ++K+++ RQ + SA++
Sbjct: 131 GRLLDLMNQGVIKLDKVDTLVLDEADRMLDMG-FLPDIRKIMSKLP--QRRQNLLFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R L + I + V V P + H F + +K L +++
Sbjct: 188 PDDIRDLADKILYRPAT-----VQVANTAPA-KTVEHVFYPVSQHLKNNLLFKVLEQTDY 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+S ++F + KA N L + +K + L+ M+ N R +L R
Sbjct: 242 DSLLVF----TRTKHKAKN-----LARRLAARGHKAT----FLQGNMSQNQRQRALDGFR 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G ++V+TDIAARGID TH+ N D+P +A Y HR GRTGR + + S +
Sbjct: 289 DGSFKVMVATDIAARGIDCDRITHVVNLDVPDTAETYTHRIGRTGR---AGRSGSAFSFV 345
Query: 242 TSEELFVLQRYENELKFKSEELTLQ 266
T ++L +++ E + + E TL+
Sbjct: 346 TRDDLRLMREIEKAVGYSIEHRTLE 370
>gi|374337605|ref|YP_005094310.1| cold-shock DEAD-box protein A [Streptococcus macedonicus ACA-DC
198]
gi|372283710|emb|CCF01907.1| Cold-shock DEAD-box protein A [Streptococcus macedonicus ACA-DC
198]
Length = 526
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 124/254 (48%), Gaps = 26/254 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ V+ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDHVETLILDEADEMLN----MGFLEDIEAIISRVPETRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P+ + I K+ K+ HV V A + + ++ ++ K+ T+ L+ D
Sbjct: 184 MPEAIK----RIGVKFMKNPE-HVKVAAKELTTDLIDQYYIRVKEQDKFDTMTRLMDVDP 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F ++K+ + + L + Y+ + +++ R L +
Sbjct: 239 PELSIVF-----GRTKRRVDELTRGLKL----RGYRAEG----IHGDLDQGKRLRVLRDF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + +
Sbjct: 286 KNDNIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKHGQSITF 342
Query: 241 ITSEELFVLQRYEN 254
+T E+ L EN
Sbjct: 343 VTPNEMGYLSIIEN 356
>gi|390950354|ref|YP_006414113.1| DNA/RNA helicase [Thiocystis violascens DSM 198]
gi|390426923|gb|AFL73988.1| DNA/RNA helicase, superfamily II [Thiocystis violascens DSM 198]
Length = 453
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 115/249 (46%), Gaps = 32/249 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCN-NRQTVFASAS 60
G + +L++ L +++LV+DE D + + + +LA C NRQ++ SA+
Sbjct: 133 GRMLELLQSGQADLRDLEILVLDEADRMLD----MGFADDVLAILGHCRPNRQSLLFSAT 188
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPL----PSCLHHRFVICGKKMKYQTLLSLI 116
+ H R L + + V+ AI P+ P H + G + K + L L+
Sbjct: 189 L--HHRGLKDITDRLLRDPQVL-----AINPVREQHPDIAHQLLLSDGLEHKQRQTLWLL 241
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
Q + E ++F + L +FL + V +L E++ R
Sbjct: 242 QHETFEKALVFTNTRD----------GAVALGNFLMGQQQ---RVAVLHGELDQRERNRV 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ + G +L++TD+AARG+D+P + NFDLPRS DYLHR GRTGR + E+
Sbjct: 289 MGLLHSGRVNILIATDLAARGLDVPGVQRVINFDLPRSGDDYLHRTGRTGR---AGEQGV 345
Query: 237 VTSIITSEE 245
S++ E
Sbjct: 346 ALSLVGKSE 354
>gi|424910616|ref|ZP_18333993.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392846647|gb|EJA99169.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 498
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 119/265 (44%), Gaps = 39/265 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 132 GRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTL 112
++P RFL N V V V + R V K K L
Sbjct: 187 TMPPEIQKLADRFLQNP----------VRVEVAKPSSTAKTVAQRIVAAHNKDYEKRAVL 236
Query: 113 LSLIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
L++++ E + IIF + + + D + + V L +M+
Sbjct: 237 RDLVRAEEAELKNAIIFCNRKKD-------------VADLFRSLDRHGFSVGALHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
SR L + G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR
Sbjct: 284 RSRTTMLQNFKDGNLKLLVASDVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTSIITSEELFVLQRYENE 255
S + +T+ + ++ L +++ E
Sbjct: 344 SGKAFTIVTKSDTKYLDAIEKLIGE 368
>gi|359407402|ref|ZP_09199879.1| DNA/RNA helicase, superfamily II [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356677441|gb|EHI49785.1| DNA/RNA helicase, superfamily II [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 471
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 123/253 (48%), Gaps = 51/253 (20%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVD------FLFNSSKQVSSLKKLLASYSSCNNRQTV 55
G L E+ L+ V++LVIDE D F+ + + VS L + RQT+
Sbjct: 155 GRLLDHFERGKVLLQDVKILVIDEADRMLDMGFIPDVERIVSYLPVM---------RQTL 205
Query: 56 FASASIPQH-----RRFLHNC----IQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK 106
F SA++ + R+F+ N + + T +D + H+ GK+
Sbjct: 206 FFSATLSEEIHTIGRKFVMNPKLIEVAKPATTADTITQHL-------------LRTTGKQ 252
Query: 107 MKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEE 166
K L L++++ ++ +IF + + S TLL + + ++ L
Sbjct: 253 -KRGALRELLRAEEIQNAVIFCNRKRDIS---------TLLSSLKRHGFNAAA----LHG 298
Query: 167 EMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTG 226
+M ++R A+L + + G LL+++D+AARG+D+P +H++NFD+P +A DY+HR GRTG
Sbjct: 299 DMTQSARLAALDDFKTGTVPLLIASDVAARGLDIPTVSHVFNFDVPSNAEDYVHRIGRTG 358
Query: 227 RKPFSDEKWTVTS 239
R +T+ +
Sbjct: 359 RAGRQGRAFTLAA 371
>gi|291165177|gb|ADD81193.1| vasa [Auxis rochei]
Length = 627
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L ++ LV+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 329 GRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 387
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + + + K+D + + V + S + F+ K K + LL L+++
Sbjct: 388 TYPEDIQRMA----ADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTT 443
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV E ++A + FL ++ + E+ R +L +
Sbjct: 444 GTERTMVFV----ETKRQA------DFIATFLCQEKVPTTSIHGDREQ---REREQALAD 490
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 491 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGR 538
>gi|257815096|gb|ACV69940.1| vasa [Osphronemus goramy]
Length = 653
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L ++ LV+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 354 GRLLDVIGRGKVGLSKLRYLVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 412
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + + + K+D + + V + S + FV K K + LL L+++
Sbjct: 413 TYPEDIQRMA----ADFLKTDYLFLAVGVVGGACSDVEQTFVQVTKFSKREQLLDLLKTT 468
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV E ++A + FL ++ + E+ R +L +
Sbjct: 469 GTERTMVFV----ETKRQA------DFIATFLCQEKVPTTSIHGDREQ---REREQALAD 515
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 516 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPSNIDEYVHRIGRTGR 563
>gi|408787040|ref|ZP_11198773.1| ATP-dependent RNA helicase [Rhizobium lupini HPC(L)]
gi|408486993|gb|EKJ95314.1| ATP-dependent RNA helicase [Rhizobium lupini HPC(L)]
Length = 498
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 119/265 (44%), Gaps = 39/265 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 132 GRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTL 112
++P RFL N V V V + R V K K L
Sbjct: 187 TMPPEIQKLADRFLQNP----------VRVEVAKPSSTAKTVAQRIVAAHNKDYEKRAVL 236
Query: 113 LSLIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
L++++ E + IIF + + + D + + V L +M+
Sbjct: 237 RDLVRAEEAELKNAIIFCNRKKD-------------VADLFRSLDRHGFSVGALHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
SR L + G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR
Sbjct: 284 RSRTTMLQNFKDGNLKLLVASDVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTSIITSEELFVLQRYENE 255
S + +T+ + ++ L +++ E
Sbjct: 344 SGKAFTIVTRSDTKYLDAIEKLIGE 368
>gi|291165173|gb|ADD81191.1| vasa [Euthynnus affinis]
Length = 640
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L ++ LV+DE D + + + +++L++S S NRQT+ SA
Sbjct: 340 GRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFE-PDMRRLVSSPGMPSKENRQTLMFSA 398
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + K+D + + V + S + F+ K K + LL L+++
Sbjct: 399 TYPEDIQRL----AADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTT 454
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV E ++A + FL ++ + E+ R +L +
Sbjct: 455 GMERTMVFV----ETKRQA------DFIATFLCQEKVPTTSIHGDREQ---REREQALAD 501
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 502 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGR 549
>gi|322792753|gb|EFZ16586.1| hypothetical protein SINV_00105 [Solenopsis invicta]
Length = 643
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 107/232 (46%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L++ +I + +V L++DE D + + + K LL +RQTV SA+
Sbjct: 362 GRLNDLVQANILDVSAVTYLILDEADRMLDMGFEPQIRKTLLGVRP---DRQTVMTSATW 418
Query: 62 PQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
PQ R ++ N +Q D+ VH + + + + K + +
Sbjct: 419 PQGVRRLAQSYMKNPLQVFVGSLDLAAVH---------SVTQKIYMVDQDEKTEYMHQFF 469
Query: 117 QSDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
Q P + I+F G++S K + S L + S G D R
Sbjct: 470 QEMGPHDKAIVFFGKKS----KVDDISSDLALSNIECQSIHGDRDQA---------DREQ 516
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L +++ G +L++TD+A+RGID+ + TH+ N+D PR +Y+HR GRTGR
Sbjct: 517 ALEDLKSGTVQILLATDVASRGIDIEDVTHVLNYDFPRDIEEYVHRVGRTGR 568
>gi|86357880|ref|YP_469772.1| ATP dependent RNA helicase [Rhizobium etli CFN 42]
gi|86281982|gb|ABC91045.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42]
Length = 527
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 113/243 (46%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 154 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 208
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P + L + Q + +V A + RFV K K L L++
Sbjct: 209 TMPPEIQKLADRFLQNPERIEVARPASAA-----KTVTQRFVASHSKDYEKRAVLRELVR 263
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ IIF + + + D + + +V L +M+ SR
Sbjct: 264 AQTELKNAIIFCNRKKD-------------VADLFRSLERHGFNVGALHGDMDQRSRTMM 310
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S +T
Sbjct: 311 LQNFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFT 370
Query: 237 VTS 239
+ +
Sbjct: 371 LVT 373
>gi|373455480|ref|ZP_09547312.1| hypothetical protein HMPREF9453_01481 [Dialister succinatiphilus
YIT 11850]
gi|371934839|gb|EHO62616.1| hypothetical protein HMPREF9453_01481 [Dialister succinatiphilus
YIT 11850]
Length = 504
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 114/249 (45%), Gaps = 35/249 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ L VQVLV+DE D + + + ++ +LA RQT+F SA++
Sbjct: 130 GRLMDHMKRGTIDLSHVQVLVLDEGDEMVDMGF-IDDIRTILAGIPE--ERQTMFFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R L + D V + A + ++ + K+ L L+ P
Sbjct: 187 PEPIRQLAETFLK-----DPELVKIKAATVTIDLIEQEYIELPDRQKFDALCRLLDMQDP 241
Query: 122 ESGIIFV------GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
E I+FV E +E KK G +++ G +++ R
Sbjct: 242 ELAIVFVRTKRRCDEVTEALKKRG----------YMAEGLHG---------DLSQQKRDT 282
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+ + ++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR
Sbjct: 283 VVRQFKEGTIDILVATDVAARGLDISGVTHVYNFDMPQDPEIYVHRVGRTGRA--GKTGL 340
Query: 236 TVTSIITSE 244
VT +I+ E
Sbjct: 341 AVTFVISRE 349
>gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
Length = 466
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 126/266 (47%), Gaps = 24/266 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V +V+DE D + N + ++ +L++ RQT+ SA++
Sbjct: 129 GRIIDHINRKTLRLDNVHTVVLDEADEMLNMGF-IDDIEAILSNVPE--KRQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + ++ + +V V + +P+ + + KK K+ L L+ AP
Sbjct: 186 PEP---IRRIAERFMNEPHIVKVKAKEMT-VPNIQQYYLEVQEKK-KFDILTRLLDIQAP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G +++ R + L + +
Sbjct: 241 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLSQAKRLSVLRKFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + +
Sbjct: 288 EGSIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKTGVAMTFV 344
Query: 242 TSEELFVLQRYENELKFKSEELTLQT 267
T E+ L E K K E + T
Sbjct: 345 TPREIGQLHNIERTTKRKMERMKPPT 370
>gi|402487889|ref|ZP_10834704.1| DEAD/DEAH box helicase [Rhizobium sp. CCGE 510]
gi|401813057|gb|EJT05404.1| DEAD/DEAH box helicase [Rhizobium sp. CCGE 510]
Length = 505
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 123/262 (46%), Gaps = 33/262 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 132 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKMKYQTLL-SLIQ 117
++P + L + Q + +V A + RFV GK + + +L L++
Sbjct: 187 TMPPEIQKLADRFLQNPERIEVAKPASAA-----ETVTQRFVASHGKDYEKRAVLRELVR 241
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ IIF + + + D + + V L +M+ SR +
Sbjct: 242 AQTELKNAIIFCNRKKD-------------VADLFRSLERHGFSVGALHGDMDQRSRTMT 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S +T
Sbjct: 289 LQSFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGASFT 348
Query: 237 V-----TSIITSEELFVLQRYE 253
+ T + + E + Q+ E
Sbjct: 349 LVTKRDTKFVDAIEKLIGQKVE 370
>gi|300719374|gb|ADK32634.1| vasa [Solea senegalensis]
Length = 335
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L ++ LV+DE D + + + +++L+ S + NRQT+ SA
Sbjct: 34 GRLMDMIGRGKVGLSKLRYLVLDEADRMLDMGFE-PEMRRLVGSPGMPTKENRQTLMFSA 92
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + K D + + V + S + F+ GK K + LL ++++
Sbjct: 93 TFPEDIQRLA----ADFLKVDYLFLAVGVVGGACSDVQQTFIEVGKFNKREQLLDILKTT 148
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
+ I+FV EK + A + FL ++ + E+ R +L +
Sbjct: 149 GMDRTIVFV----EKKRYA------DFIATFLCQEKLPTTSIHGDREQYQ---REQALAD 195
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P+ ++ NFDLP + +Y+HR GRTGR
Sbjct: 196 FRSGKXPVLVATSVAARGLDIPDVQNVVNFDLPNNIDEYVHRIGRTGR 243
>gi|395778261|ref|ZP_10458773.1| hypothetical protein MCU_00474 [Bartonella elizabethae Re6043vi]
gi|423715482|ref|ZP_17689706.1| hypothetical protein MEE_00907 [Bartonella elizabethae F9251]
gi|395417469|gb|EJF83806.1| hypothetical protein MCU_00474 [Bartonella elizabethae Re6043vi]
gi|395429609|gb|EJF95670.1| hypothetical protein MEE_00907 [Bartonella elizabethae F9251]
Length = 467
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 129/272 (47%), Gaps = 46/272 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL + RQT+F SA
Sbjct: 136 GRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKL-----TPFTRQTLFFSA 190
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++ ++FLH+ + + TK+ V R V G K K L
Sbjct: 191 TMAPEITKLTKQFLHSPVSVEVTKASSTATTVT----------QRLVKSGNKSWDKRAVL 240
Query: 113 LSLIQSDAP--ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LIQ++ ++ IIF + + S + + K + +V L +M+
Sbjct: 241 RELIQNEGSKLQNAIIFCNRKRDIS-------------ELFRSLIKHNFNVGALHGDMDQ 287
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
SR +L + + LLV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 288 YSRMNTLADFKNNKLTLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGR--- 344
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSEE 262
++ + +I+T ++ Q+Y N ++ S E
Sbjct: 345 ANRRGKAFTIVTKDD----QKYINAIEEISNE 372
>gi|407776571|ref|ZP_11123844.1| DEAD/DEAH box helicase [Nitratireductor pacificus pht-3B]
gi|407301862|gb|EKF20981.1| DEAD/DEAH box helicase [Nitratireductor pacificus pht-3B]
Length = 456
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 119/250 (47%), Gaps = 21/250 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ L + LV+DE D + + ++ ++++ + ++ +RQT SA++
Sbjct: 142 GRLTDLVRSGELSLAETRWLVLDEADRMLDMGF-INDVRRI--ARATHADRQTALFSATM 198
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ L + ++ + +V A++ + R V+ K K + L ++ +
Sbjct: 199 PREIEQLAASLLKEPVRVEVAKQSTTAVE-----ITQRLVMARTKQKRKVLSDMLADETM 253
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
S I+F ++K + + L D + ++ + N+R +L R
Sbjct: 254 RSVIVFA-----RTKHGADRVTRDLERDGF--------EAAVIHGNKSQNARQRALNGFR 300
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TDIAARGID+P +H+ NFDLP Y+HR GRTGR S E T+
Sbjct: 301 DGSVRILVATDIAARGIDVPGISHVVNFDLPDQPESYVHRIGRTGRNGASGEAVTLCDPA 360
Query: 242 TSEELFVLQR 251
S++L +++
Sbjct: 361 ESDKLRAVEK 370
>gi|424073352|ref|ZP_17810770.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|407996213|gb|EKG36696.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
Length = 445
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNR-QTVFAS 58
G L + + L+ V+VLV+DE D + + S+ V L C R QT+ S
Sbjct: 130 GRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERL------AGECAGREQTMLFS 183
Query: 59 ASIPQH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSL 115
A+ R + ++ D H+ VN++ L S H+ + + K Q L L
Sbjct: 184 ATTGGAGLREMIGKVLK------DPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWL 237
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ ++ + IIF ++ + G ++ YK +L + + R A
Sbjct: 238 LANETYQKAIIFTNTKAMADRLYGR---------LVALEYK----AFVLHGDKDQKDRKA 284
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++ ++QGG ++V+TD+AARG+D+ + NFD+PRS DY+HR GRTGR
Sbjct: 285 AIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGR 336
>gi|294497529|ref|YP_003561229.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
gi|294347466|gb|ADE67795.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
Length = 481
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 117/260 (45%), Gaps = 30/260 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + IEK LE ++ LVIDE D + N QV ++ + L S R T+ SA
Sbjct: 131 GRVLDHIEKETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQHLPS-----ERVTMLFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDV-VHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
++P+ L +K+ K V V + N + S + H + + K++ L +
Sbjct: 186 TLPEDIEEL----SRKYMKKPVDVEIKANGL--TTSTIDHSVISVENERKFELLKDVTTV 239
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ P+S IIF Q + TLL D Y + M R +
Sbjct: 240 ENPDSCIIFCRTQEQ---------VNTLLDDLDDFGYPCDK----IHGAMVQEDRFEVMN 286
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ ++G LV+TD+AARGID+ TH+ N+DLP Y+HR GRTGR + +K
Sbjct: 287 DFKKGKFRYLVATDVAARGIDIDNITHVINYDLPLEKESYVHRTGRTGR---AGKKGKAI 343
Query: 239 SIITSEELFVLQRYENELKF 258
+ +T E +L E + F
Sbjct: 344 TFVTPYEKRMLSEIEEYIGF 363
>gi|237798870|ref|ZP_04587331.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331021724|gb|EGI01781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 445
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNR-QTVFAS 58
G L + + L+ V+VLV+DE D + + S+ V L C R QT+ S
Sbjct: 130 GRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERL------AGECAGREQTMLFS 183
Query: 59 ASIPQH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSL 115
A+ R + ++ D H+ VN++ L S H+ + + K Q L L
Sbjct: 184 ATTGGAGLREMIGKVLK------DPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWL 237
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ ++ + IIF ++ + G ++ YK +L + + R A
Sbjct: 238 LANETYQKAIIFTNTKAMADRLYGR---------LVALEYK----AFVLHGDKDQKDRKA 284
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++ ++QGG ++V+TD+AARG+D+ + NFD+PRS DY+HR GRTGR
Sbjct: 285 AIDRLKQGGAKIMVATDVAARGLDVEGLDMVVNFDMPRSGDDYVHRVGRTGR 336
>gi|222086115|ref|YP_002544647.1| ATP dependent RNA helicase [Agrobacterium radiobacter K84]
gi|221723563|gb|ACM26719.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84]
Length = 506
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 113/248 (45%), Gaps = 38/248 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + +V++ VIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRLLDHFERGKLLMSAVEIFVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKM-KYQTL 112
++P RFL N + V V+A + RFV GK K L
Sbjct: 187 TMPAEIQKLADRFLQNPER----------VEVSAPASTAKTVTQRFVASHGKDYEKRAAL 236
Query: 113 LSLIQSDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFN 171
LI++ ++ IIF + + + D + + V L +M+
Sbjct: 237 RDLIRAQTDLKNAIIFCNRKVD-------------VADLFRSLQRHGFSVGALHGDMDQR 283
Query: 172 SRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS 231
SR L R G LLV++D+AARG+DLP+ H++NFD+P + DY+HR GRTGR S
Sbjct: 284 SRTTMLQNFRDGQIQLLVASDVAARGLDLPDVGHVFNFDVPIHSEDYVHRIGRTGRAGRS 343
Query: 232 DEKWTVTS 239
+T+ +
Sbjct: 344 GAAFTLVT 351
>gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
gi|448236523|ref|YP_007400581.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
gi|445205365|gb|AGE20830.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
Length = 467
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +LE V +V+DE D + N + ++ +L+ + RQT+ SA++
Sbjct: 129 GRIIDHINRGTLRLEHVHTVVLDEADEMLNMGF-IEDIEAILSHVPA--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ + ++V V + +P+ + + KK K+ L L+ AP
Sbjct: 186 PDP---IRRIAERFMNEPELVKVKAKEMT-VPNIQQYYLEVHEKK-KFDILTRLLDIQAP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G +++ R + L + +
Sbjct: 241 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLSQAKRLSVLRKFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + +
Sbjct: 288 EGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKTGVAMTFV 344
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E+ L E K K E +
Sbjct: 345 TPREIGQLHHIERTTKRKMERM 366
>gi|255023649|ref|ZP_05295635.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-208]
Length = 399
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL+ V+ LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 131 GRILDHINRRTLKLDHVETLVLDEADEMLNMGF-IDDIETILKEVPA--ERQTLLFSATM 187
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ +++ + + L + FV +K K+ L L+
Sbjct: 188 PDPIRRIGERFMHS--------PELIRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 237
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE I+F ++K+ + S L + +++ G ++ R +
Sbjct: 238 DVQAPELAIVF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 283
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 284 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 335
>gi|47094873|ref|ZP_00232487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
F6854]
gi|284801196|ref|YP_003413061.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
gi|284994338|ref|YP_003416106.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
gi|404283308|ref|YP_006684205.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2372]
gi|404410105|ref|YP_006695693.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC5850]
gi|404412950|ref|YP_006698537.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC7179]
gi|405757863|ref|YP_006687139.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2479]
gi|47016755|gb|EAL07674.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
F6854]
gi|284056758|gb|ADB67699.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
gi|284059805|gb|ADB70744.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
gi|404229931|emb|CBY51335.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC5850]
gi|404232810|emb|CBY54213.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2372]
gi|404235745|emb|CBY57147.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2479]
gi|404238649|emb|CBY60050.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC7179]
Length = 522
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL+ V+ LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 131 GRILDHINRRTLKLDHVETLVLDEADEMLNMGF-IDDIETILKEVPA--ERQTLLFSATM 187
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ +++ + + L + FV +K K+ L L+
Sbjct: 188 PDPIRRIGERFMHS--------PELIRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 237
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE I+F ++K+ + S L + +++ G ++ R +
Sbjct: 238 DVQAPELAIVF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 283
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 284 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 335
>gi|328952772|ref|YP_004370106.1| DEAD/DEAH box helicase [Desulfobacca acetoxidans DSM 11109]
gi|328453096|gb|AEB08925.1| DEAD/DEAH box helicase domain protein [Desulfobacca acetoxidans DSM
11109]
Length = 415
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 131/258 (50%), Gaps = 25/258 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + L +++VLV+DE D +F+ + ++K++ + RQT+ SA++
Sbjct: 129 GRLLDHMNQGTIDLSNLEVLVLDESDRMFDMGF-LPDIRKIIKHVPT--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P LH + + K+ V V VN I P + + HR + +K LL L++
Sbjct: 186 PDD--ILH--LAHEVLKAPVT-VQVNNIGPAIN-VSHRLYPIKQHLKTALLLELLRHTNT 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
ES +IF ++K+ G Y+ +S L+ ++ R A + R
Sbjct: 240 ESVLIFT-RTKHRAKRLGE--------QLGKAGYRATS----LQGNLSQGRRQAVMNGFR 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TDIAARGID+ + +H+ N+D+P + Y HR GRTGR + + +T I
Sbjct: 287 NGTFQILVATDIAARGIDVTQISHVINYDMPDTIDAYTHRIGRTGRNTKTGDAFT---FI 343
Query: 242 TSEELFVLQRYENELKFK 259
TSE+ +++R EN L+ +
Sbjct: 344 TSEDEDMVRRIENVLRTR 361
>gi|417104064|ref|ZP_11961294.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
gi|327191069|gb|EGE58122.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
Length = 499
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P + L + Q + +V A + RFV K K L L++
Sbjct: 187 TMPPEIQKLADRFLQNPERVEVAKPASAA-----KTVTQRFVASHSKDYEKRAVLRELVR 241
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ IIF + + + D + + V L +M+ SR
Sbjct: 242 AQGELKNAIIFCNRKKD-------------VADLFRSLERHGFSVGALHGDMDQRSRTTM 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S +T
Sbjct: 289 LQNFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFT 348
Query: 237 VTS 239
+ +
Sbjct: 349 LVT 351
>gi|88800218|ref|ZP_01115786.1| ATP-dependent RNA helicase [Reinekea blandensis MED297]
gi|88777064|gb|EAR08271.1| ATP-dependent RNA helicase [Reinekea sp. MED297]
Length = 534
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 21/227 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + L+ +++L+IDE D + + + +K ++ + NRQT+ SA+
Sbjct: 161 GRLIDFMNRKAVFLDQIEMLIIDEADRMLDMGF-IPDIKTIVRATPRTENRQTLLFSATF 219
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNA-IKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
Q L+ + Q+WT +D V V V +K H +++ ++ KY L +++ D
Sbjct: 220 SQD--ILN--LAQRWT-NDPVRVEVEPKVKTAEDVEQHVYLVSSEE-KYPVLRRIVRQDE 273
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
+ ++F + ++ D N K +L ++ N R +L
Sbjct: 274 ADRVMVFANRRD-------------IVRDLAENLKKDGIPCQVLSGDVPQNKRIRTLDGF 320
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++G +LV+TD+A RGI + +H+ NF LP DY+HR GRTGR
Sbjct: 321 KEGKFEVLVATDVAGRGIHVDGVSHVINFTLPEDPEDYVHRIGRTGR 367
>gi|434386838|ref|YP_007097449.1| DNA/RNA helicase, superfamily II [Chamaesiphon minutus PCC 6605]
gi|428017828|gb|AFY93922.1| DNA/RNA helicase, superfamily II [Chamaesiphon minutus PCC 6605]
Length = 519
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 127/258 (49%), Gaps = 27/258 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI++ +L V+ LV+DE D + S + ++ +L+ + RQT F SA++
Sbjct: 132 GRVIDLIDRGHLRLGQVEWLVLDEADEML-SMGFIDDIELILSKLPT--ERQTAFFSATM 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHR-FVICGKKMKYQTLLSLIQSDA 120
R L N ++ KS V V V+ +K PS + + + I K Q L +++ +
Sbjct: 189 APPIRSLVN----RFLKSPVT-VTVDQVKAAPSKIQQQVYFIPRGWTKAQALQPILELEQ 243
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLL-VDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PES IIFV +++KA + L ++ Y G ++ R L
Sbjct: 244 PESAIIFV-----RTRKAAAELTNQLQSAGHSADEYHG---------DLTQTQRERLLTR 289
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R +V+TDIAARG+D+ +H+ N+DLP S +Y+HR GRTGR + ++ S
Sbjct: 290 FRSDKVRWIVATDIAARGLDVDHLSHVINYDLPDSVENYIHRIGRTGR---AGKEGVAIS 346
Query: 240 IITSEELFVLQRYENELK 257
+I S + LQ E +K
Sbjct: 347 LIHSLDRRKLQAIERRVK 364
>gi|224371289|ref|YP_002605453.1| protein RecQ2 [Desulfobacterium autotrophicum HRM2]
gi|223694006|gb|ACN17289.1| RecQ2 [Desulfobacterium autotrophicum HRM2]
Length = 537
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 21/227 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + + L +++LVIDE D L + + ++ ++ + RQT+F SA++
Sbjct: 231 GRLMDFMRQKLINLGKIEILVIDEADRLLDMGF-IPDMRNIIYNTPHKKERQTLFFSATL 289
Query: 62 -PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P+ R + +WT V V ++ K ++ + I + K+ L +LI +
Sbjct: 290 APEILRMAN-----QWTVDPAV-VEIDPDKTAADSINQKVFIVTEDQKFPLLYNLISGEK 343
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
E I+FV +S + A LV F +S +L E++ R +L +
Sbjct: 344 LERVILFVNMRSTTRRIAQR------LVQFDISSE-------ILSGEVSQKQRIRTLDDF 390
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+TD+AARG+ + +H+ N+DLP+ Y+HR GRTGR
Sbjct: 391 RNGKVRVLVATDVAARGLHIEGVSHVINYDLPQDPEHYIHRIGRTGR 437
>gi|190891965|ref|YP_001978507.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
gi|190697244|gb|ACE91329.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
Length = 527
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 154 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 208
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P + L + Q + +V A + RFV K K L L++
Sbjct: 209 TMPPEIQKLADRFLQNPERIEVAKPASTA-----KTVTQRFVASHSKDYEKRAVLRELVR 263
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ IIF + + + D + + V L +M+ SR
Sbjct: 264 AQTELKNAIIFCNRKKD-------------VADLFRSLERHGFSVGALHGDMDQRSRTTM 310
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S +T
Sbjct: 311 LQNFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFT 370
Query: 237 VTS 239
+ +
Sbjct: 371 LVT 373
>gi|71736956|ref|YP_273717.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|289647906|ref|ZP_06479249.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
str. 2250]
gi|422584568|ref|ZP_16659674.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|422598398|ref|ZP_16672660.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|422680932|ref|ZP_16739203.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|71557509|gb|AAZ36720.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298157456|gb|EFH98539.1| ATP-dependent RNA helicase SrmB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330869381|gb|EGH04090.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330988677|gb|EGH86780.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331010277|gb|EGH90333.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 445
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNR-QTVFAS 58
G L + + L+ V+VLV+DE D + + S+ V L C R QT+ S
Sbjct: 130 GRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERL------AGECAGREQTMLFS 183
Query: 59 ASIPQH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSL 115
A+ R + ++ D H+ VN++ L S H+ + + K Q L L
Sbjct: 184 ATTGGAGLREMIGKVLK------DPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWL 237
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ ++ + IIF ++ + G ++ YK +L + + R A
Sbjct: 238 LANETYQKAIIFTNTKAMADRLYGR---------LVALEYK----AFVLHGDKDQKDRKA 284
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++ ++QGG ++V+TD+AARG+D+ + NFD+PRS DY+HR GRTGR
Sbjct: 285 AIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGR 336
>gi|227522395|ref|ZP_03952444.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
ATCC 8290]
gi|227090453|gb|EEI25765.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
ATCC 8290]
Length = 502
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 29/230 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + I +H KLE V+ LV+DE D + N + S+ K + ++RQT+ SA
Sbjct: 128 GRILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIK-----QTPSDRQTLLFSA 182
Query: 60 SIP-QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
++P Q +R + ++ K D V + A + + +V + K+ T+
Sbjct: 183 TMPPQIKR-----VGVQFMK-DPHQVKIKAKELTTDLIDQYYVRVKEYEKFDTMTRFFDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASL 177
PE I+F T VD +S + + L ++ R +
Sbjct: 237 QDPEVTIVFC--------------RTKRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIM 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
E +QG +LV+TD+AARGID+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 283 NEFKQGKVDILVATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGR 332
>gi|255017210|ref|ZP_05289336.1| hypothetical protein LmonF_04463 [Listeria monocytogenes FSL
F2-515]
Length = 394
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL+ V+ LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 129 GRILDHINRRTLKLDHVETLVLDEADEMLNMGF-IDDIETILKEVPA--ERQTLLFSATM 185
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ +++ + + L + FV +K K+ L L+
Sbjct: 186 PDPIRRIGERFMHS--------PELIRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 235
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE I+F ++K+ + S L + +++ G ++ R +
Sbjct: 236 DVQAPELAIVF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 281
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 282 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 333
>gi|66047019|ref|YP_236860.1| helicase [Pseudomonas syringae pv. syringae B728a]
gi|422673345|ref|ZP_16732705.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aceris
str. M302273]
gi|424068921|ref|ZP_17806369.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|440722920|ref|ZP_20903290.1| helicase [Pseudomonas syringae BRIP34876]
gi|440727353|ref|ZP_20907589.1| helicase [Pseudomonas syringae BRIP34881]
gi|63257726|gb|AAY38822.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Pseudomonas syringae pv. syringae B728a]
gi|330971079|gb|EGH71145.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aceris
str. M302273]
gi|407996030|gb|EKG36527.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|440360496|gb|ELP97768.1| helicase [Pseudomonas syringae BRIP34876]
gi|440364118|gb|ELQ01258.1| helicase [Pseudomonas syringae BRIP34881]
Length = 445
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNR-QTVFAS 58
G L + + L+ V+VLV+DE D + + S+ V L C R QT+ S
Sbjct: 130 GRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERL------AGECAGREQTMLFS 183
Query: 59 ASIPQH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSL 115
A+ R + ++ D H+ VN++ L S H+ + + K Q L L
Sbjct: 184 ATTGGAGLREMIGKVLK------DPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWL 237
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ ++ + IIF ++ + G ++ YK +L + + R A
Sbjct: 238 LANETYQKAIIFTNTKAMADRLYGR---------LVALEYK----AFVLHGDKDQKDRKA 284
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++ ++QGG ++V+TD+AARG+D+ + NFD+PRS DY+HR GRTGR
Sbjct: 285 AIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGR 336
>gi|28868793|ref|NP_791412.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213969602|ref|ZP_03397738.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
T1]
gi|28852032|gb|AAO55107.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213925698|gb|EEB59257.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
T1]
Length = 453
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNR-QTVFAS 58
G L + + L+ V+VLV+DE D + + S+ V L C R QT+ S
Sbjct: 138 GRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERL------AGECAGREQTMLFS 191
Query: 59 ASIPQH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSL 115
A+ R + ++ D H+ VN++ L S H+ + + K Q L L
Sbjct: 192 ATTGGAGLREMIGKVLK------DPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWL 245
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ ++ + IIF ++ + G ++ YK +L + + R A
Sbjct: 246 LANETYQKAIIFTNTKAMADRLYGR---------LVALEYK----AFVLHGDKDQKDRKA 292
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++ ++QGG ++V+TD+AARG+D+ + NFD+PRS DY+HR GRTGR
Sbjct: 293 AIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGR 344
>gi|424870828|ref|ZP_18294490.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393166529|gb|EJC66576.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 521
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 117/243 (48%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 138 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 192
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKMKYQTLL-SLIQ 117
++P + L + Q + +V A + + RFV GK + + +L L++
Sbjct: 193 TMPSEIQKLADRFLQNPERIEVAKPASAA-----ATVTQRFVASHGKDYEKRAVLRELVR 247
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ IIF + + + D + + V L +M+ SR +
Sbjct: 248 AQTELKNAIIFCNRKKD-------------VADLFRSLERHGFSVGALHGDMDQRSRTMT 294
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S +T
Sbjct: 295 LQSFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFT 354
Query: 237 VTS 239
+ +
Sbjct: 355 LVT 357
>gi|16802907|ref|NP_464392.1| hypothetical protein lmo0866 [Listeria monocytogenes EGD-e]
gi|254827809|ref|ZP_05232496.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
gi|254911550|ref|ZP_05261562.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
gi|254935876|ref|ZP_05267573.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
gi|386043190|ref|YP_005961995.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 10403S]
gi|386046528|ref|YP_005964860.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J0161]
gi|386049793|ref|YP_005967784.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-561]
gi|386053133|ref|YP_005970691.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes Finland
1998]
gi|16410269|emb|CAC98944.1| lmo0866 [Listeria monocytogenes EGD-e]
gi|258600190|gb|EEW13515.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
gi|258608464|gb|EEW21072.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
gi|293589496|gb|EFF97830.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
gi|345533519|gb|AEO02960.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J0161]
gi|345536424|gb|AEO05864.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 10403S]
gi|346423639|gb|AEO25164.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-561]
gi|346645784|gb|AEO38409.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes Finland
1998]
gi|441470507|emb|CCQ20262.1| DEAD-box ATP-dependent RNA helicase CshA [Listeria monocytogenes]
gi|441473637|emb|CCQ23391.1| DEAD-box ATP-dependent RNA helicase CshA [Listeria monocytogenes
N53-1]
Length = 520
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL+ V+ LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 129 GRILDHINRRTLKLDHVETLVLDEADEMLNMGF-IDDIETILKEVPA--ERQTLLFSATM 185
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ +++ + + L + FV +K K+ L L+
Sbjct: 186 PDPIRRIGERFMHS--------PELIRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 235
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE I+F ++K+ + S L + +++ G ++ R +
Sbjct: 236 DVQAPELAIVF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 281
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 282 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 333
>gi|85860692|ref|YP_462894.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
gi|85723783|gb|ABC78726.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
Length = 423
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 29/246 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L L+ + + L ++V V+DE D +F+ ++ + K L RQT+ SA
Sbjct: 129 GRLLDLVAQGVADLSGIEVFVLDEADRMFDMGFLPEIRKITKQLP-----EKRQTLLFSA 183
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P R L I D + + + P+ S + H + +K L+ L++
Sbjct: 184 TMPADIRSLAKDILH-----DPLTIRIGNDIPV-STVSHTLYPVEQHLKTALLIKLLKET 237
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
ES ++F + ++ A K V L+ +++ N R +L
Sbjct: 238 DTESVLVFARTKHRTTRVA-------------MQMKKAGFPVSSLQGDLSQNQRQTALNG 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R+G +L++TDIAARGID+ +H+ N+D+P + Y HR GRTGR S + + S
Sbjct: 285 FREGKYRILIATDIAARGIDVTRISHVINYDMPDTVEAYTHRIGRTGRATKSGDAF---S 341
Query: 240 IITSEE 245
+TSEE
Sbjct: 342 FVTSEE 347
>gi|301384847|ref|ZP_07233265.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
Max13]
gi|302059212|ref|ZP_07250753.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
K40]
gi|302130851|ref|ZP_07256841.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|422297602|ref|ZP_16385235.1| ATP-dependent RNA helicase SrmB [Pseudomonas avellanae BPIC 631]
gi|422658705|ref|ZP_16721137.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|331017330|gb|EGH97386.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|407990944|gb|EKG32917.1| ATP-dependent RNA helicase SrmB [Pseudomonas avellanae BPIC 631]
Length = 445
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNR-QTVFAS 58
G L + + L+ V+VLV+DE D + + S+ V L C R QT+ S
Sbjct: 130 GRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERL------AGECAGREQTMLFS 183
Query: 59 ASIPQH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSL 115
A+ R + ++ D H+ VN++ L S H+ + + K Q L L
Sbjct: 184 ATTGGAGLREMIGKVLK------DPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWL 237
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ ++ + IIF ++ + G ++ YK +L + + R A
Sbjct: 238 LANETYQKAIIFTNTKAMADRLYGR---------LVALEYK----AFVLHGDKDQKDRKA 284
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++ ++QGG ++V+TD+AARG+D+ + NFD+PRS DY+HR GRTGR
Sbjct: 285 AIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGR 336
>gi|422412306|ref|ZP_16489265.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
S4-378]
gi|313619814|gb|EFR91407.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
S4-378]
Length = 518
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL+ V+ LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 131 GRILDHINRRTLKLDHVETLVLDEADEMLNMGF-IDDIETILKEVPA--ERQTLLFSATM 187
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ +++ + + L + FV +K K+ L L+
Sbjct: 188 PDPIRRIGERFMHS--------PELIRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 237
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE I+F ++K+ + S L + +++ G ++ R +
Sbjct: 238 DVQAPELAIVF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 283
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 284 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 335
>gi|227509297|ref|ZP_03939346.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227512309|ref|ZP_03942358.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
gi|227084484|gb|EEI19796.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
gi|227191227|gb|EEI71294.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 502
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 29/230 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + I +H KLE V+ LV+DE D + N + S+ K + ++RQT+ SA
Sbjct: 128 GRILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIK-----QTPSDRQTLLFSA 182
Query: 60 SIP-QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
++P Q +R + ++ K D V + A + + +V + K+ T+
Sbjct: 183 TMPPQIKR-----VGVQFMK-DPHQVKIKAKELTTDLIDQYYVRVKEYEKFDTMTRFFDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASL 177
PE I+F T VD +S + + L ++ R +
Sbjct: 237 QDPEVTIVFC--------------RTKRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIM 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
E +QG +LV+TD+AARGID+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 283 NEFKQGKVDILVATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGR 332
>gi|88704045|ref|ZP_01101760.1| ATP-dependent RNA helicase rhlB [Congregibacter litoralis KT71]
gi|88701872|gb|EAQ98976.1| ATP-dependent RNA helicase rhlB [Congregibacter litoralis KT71]
Length = 427
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 22/252 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + L+ V+VLV+DE D + + + +K+++ + RQT+ SA+
Sbjct: 179 GRLIDFTGRRDLVLDQVEVLVLDEADRMLDMGF-IPQVKRIVRQTPHKDYRQTLLFSATF 237
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
Q + N + Q+WT +D + + + + R + + +++ L++L++SD
Sbjct: 238 TQD---IIN-LSQQWT-TDAITIEIEPDHVATDSVDQRIYLASSEERFRILVNLLRSDDA 292
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
S I+F + + + K S +L E+ R +L + +
Sbjct: 293 SSVIVFANRRDQVRR-------------LFERLRKASITCGMLSGEIAQAKRTKTLDQFK 339
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+A RGI + TH+ N++LP DY+HR GRTGR S T S
Sbjct: 340 KGEISVLVATDVAGRGIHVDGVTHVVNYNLPEDPEDYVHRIGRTGRAGAS---GTSISFA 396
Query: 242 TSEELFVLQRYE 253
+ ++ F+L E
Sbjct: 397 SEDDAFLLPDLE 408
>gi|329116940|ref|ZP_08245657.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
NCFD 2020]
gi|333905334|ref|YP_004479205.1| DEAD box helicase family protein [Streptococcus parauberis KCTC
11537]
gi|326907345|gb|EGE54259.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
NCFD 2020]
gi|333120599|gb|AEF25533.1| DEAD box helicase family protein [Streptococcus parauberis KCTC
11537]
gi|456371307|gb|EMF50203.1| Cold-shock DEAD-box protein A [Streptococcus parauberis KRS-02109]
gi|457095009|gb|EMG25504.1| Cold-shock DEAD-box protein A [Streptococcus parauberis KRS-02083]
Length = 537
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 118/256 (46%), Gaps = 30/256 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ V+ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDHVETLILDEADEMLN----MGFLEDIEAIISRVPANRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P I+Q K + HV + + + +V ++ K+ T+ L+
Sbjct: 184 MPA-------PIKQIGVKFMKEPEHVQIKNKELTNVNVEQFYVRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
D PE I+F ++ L F + G +++ N R +
Sbjct: 237 DQPELSIVF----GRTKRRVDEITRGLKLRGFRAEGIHG---------DLDQNKRLRVIR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + +LV+TD+AARG+D+ + TH+YN+D+ + Y+HR GRTGR S E T
Sbjct: 284 DFKGDQVDILVATDVAARGLDISDVTHVYNYDITQDPESYVHRIGRTGRAGKSGESIT-- 341
Query: 239 SIITSEELFVLQRYEN 254
++ E+ L EN
Sbjct: 342 -FVSPNEMGYLSMIEN 356
>gi|427413381|ref|ZP_18903573.1| hypothetical protein HMPREF9282_00980 [Veillonella ratti
ACS-216-V-Col6b]
gi|425716197|gb|EKU79183.1| hypothetical protein HMPREF9282_00980 [Veillonella ratti
ACS-216-V-Col6b]
Length = 523
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 37/234 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +E+ ++V+V+V+DE D + N + + K+LA+ RQT+ SA++
Sbjct: 130 GRLMDHMERGSINFDNVKVIVLDEADEMLNMGF-IDDINKILAAVPE--QRQTLLFSATM 186
Query: 62 PQHRRFL-HNCIQQ-KWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
P + L N +++ + + V ++ I+ ++ + K+ L L+
Sbjct: 187 PPAIQTLAENYLKEPRLIRMKPTQVTMDLIE-------QYYIEVQDRQKFDLLCRLLDMQ 239
Query: 120 APESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
APE I+F V E +E KK G +++ G +++ R
Sbjct: 240 APELAIVFGRTKRRVDEVTEGLKKRG----------YMAEGIHG---------DLSQQKR 280
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ + + R+G +LV+TD+AARG+D+ TH+YN+DLP+ Y+HR GRTGR
Sbjct: 281 DSVIRQFREGTIDILVATDVAARGLDISGVTHVYNYDLPQDPESYVHRVGRTGR 334
>gi|19920478|ref|NP_608544.1| KH1 [Drosophila melanogaster]
gi|7296165|gb|AAF51458.1| KH1 [Drosophila melanogaster]
gi|16197943|gb|AAL13741.1| LD21669p [Drosophila melanogaster]
gi|220945706|gb|ACL85396.1| KH1-PA [synthetic construct]
gi|220955478|gb|ACL90282.1| KH1-PA [synthetic construct]
Length = 536
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 127/263 (48%), Gaps = 27/263 (10%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASY------SSCNNRQT 54
+G+L +L+ I+++E V+ LV+DE D L + + L L + Q
Sbjct: 242 LGALSKLVTTGIYRMEQVRHLVLDEADTLLDDTF-TDKLSYFLRRFPFHLVQKEDAGTQM 300
Query: 55 VFASASIPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLL 113
+ ASA++P + R LH I T +VV H++ L S + +F+ K + TLL
Sbjct: 301 ILASATMPTNTREILHKVIDVD-TIREVVSPHLHR---LMSHVTQKFLRLSKADRPATLL 356
Query: 114 SLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNS 172
SL++ D + + V N +T+ V FL+NS + L L +M
Sbjct: 357 SLVKHDLAKRRPLIV---------FSNKSTTSDFVSIFLNNS---GVNCLNLNGDMLMKI 404
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSD 232
R + + G +L +TD+ +RG+D H+ NFD P DY+HR GR GR D
Sbjct: 405 RLGRFEQFQNGHCDVLSTTDVGSRGLDTTRARHVVNFDFPLHVSDYIHRCGRIGRVGNMD 464
Query: 233 EKWTVTSIITS-EELFVLQRYEN 254
K VT++I+S E+ V+QR E+
Sbjct: 465 -KALVTNLISSRREIDVVQRIEH 486
>gi|315223209|ref|ZP_07865070.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
gi|315187641|gb|EFU21395.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
Length = 539
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 116/253 (45%), Gaps = 32/253 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL V+ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 149 GRLLDLIKRKALKLNHVETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 204
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 205 MP-------DAIKRIGVKFMKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 257
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASL 177
+ PE I+F T VD L+ K + +++ R L
Sbjct: 258 EQPELSIVF--------------GRTKRRVDELTRGLKIRGFRTEGIHGDLDQGKRLRVL 303
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 304 RDFKNGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 362
Query: 238 TSIITSEELFVLQ 250
+ E+ LQ
Sbjct: 363 --FVAPNEMGYLQ 373
>gi|315281538|ref|ZP_07870145.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
S4-120]
gi|386007591|ref|YP_005925869.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
gi|404407318|ref|YP_006690033.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2376]
gi|422408998|ref|ZP_16485959.1| dead-box ATP-dependent rna helicase ydbr [Listeria monocytogenes
FSL F2-208]
gi|423099964|ref|ZP_17087671.1| DEAD/DEAH box helicase [Listeria innocua ATCC 33091]
gi|307570401|emb|CAR83580.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
gi|313609827|gb|EFR85263.1| dead-box ATP-dependent rna helicase ydbr [Listeria monocytogenes
FSL F2-208]
gi|313614811|gb|EFR88348.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
S4-120]
gi|370793697|gb|EHN61530.1| DEAD/DEAH box helicase [Listeria innocua ATCC 33091]
gi|404241467|emb|CBY62867.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2376]
Length = 518
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL+ V+ LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 131 GRILDHINRRTLKLDHVETLVLDEADEMLNMGF-IDDIETILKEVPA--ERQTLLFSATM 187
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ +++ + + L + FV +K K+ L L+
Sbjct: 188 PDPIRRIGERFMHS--------PELIRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 237
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE I+F ++K+ + S L + +++ G ++ R +
Sbjct: 238 DVQAPELAIVF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 283
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 284 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 335
>gi|46907098|ref|YP_013487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
str. F2365]
gi|47092073|ref|ZP_00229866.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
H7858]
gi|254992756|ref|ZP_05274946.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-064]
gi|255521719|ref|ZP_05388956.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-175]
gi|258611720|ref|ZP_05241706.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
gi|293596169|ref|ZP_05228867.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
gi|293596832|ref|ZP_05264606.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
gi|300764074|ref|ZP_07074069.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
gi|404280417|ref|YP_006681315.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2755]
gi|404286275|ref|YP_006692861.1| ATP-dependent RNA helicase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749220|ref|YP_006672686.1| ATP-dependent RNA helicase [Listeria monocytogenes ATCC 19117]
gi|405752085|ref|YP_006675550.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2378]
gi|405754943|ref|YP_006678407.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2540]
gi|406703641|ref|YP_006753995.1| ATP-dependent RNA helicase [Listeria monocytogenes L312]
gi|424713744|ref|YP_007014459.1| DEAD-box ATP-dependent RNA helicase CshA [Listeria monocytogenes
serotype 4b str. LL195]
gi|424822593|ref|ZP_18247606.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
gi|46880365|gb|AAT03664.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
str. F2365]
gi|47019513|gb|EAL10253.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
H7858]
gi|258605664|gb|EEW18272.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
gi|293582796|gb|EFF94828.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
gi|293593090|gb|EFG00851.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
gi|300515064|gb|EFK42116.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
gi|332311273|gb|EGJ24368.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
gi|404218420|emb|CBY69784.1| ATP-dependent RNA helicase [Listeria monocytogenes ATCC 19117]
gi|404221285|emb|CBY72648.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2378]
gi|404224143|emb|CBY75505.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2540]
gi|404227052|emb|CBY48457.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2755]
gi|404245204|emb|CBY03429.1| ATP-dependent RNA helicase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406360671|emb|CBY66944.1| ATP-dependent RNA helicase [Listeria monocytogenes L312]
gi|424012928|emb|CCO63468.1| DEAD-box ATP-dependent RNA helicase CshA [Listeria monocytogenes
serotype 4b str. LL195]
Length = 519
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL+ V+ LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 131 GRILDHINRRTLKLDHVETLVLDEADEMLNMGF-IDDIETILKEVPA--ERQTLLFSATM 187
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ +++ + + L + FV +K K+ L L+
Sbjct: 188 PDPIRRIGERFMHS--------PELIRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 237
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE I+F ++K+ + S L + +++ G ++ R +
Sbjct: 238 DVQAPELAIVF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 283
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 284 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 335
>gi|51244750|ref|YP_064634.1| ATP-dependent RNA helicase (RhlE) [Desulfotalea psychrophila LSv54]
gi|50875787|emb|CAG35627.1| related to ATP-dependent RNA helicase (RhlE) [Desulfotalea
psychrophila LSv54]
Length = 498
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 19/226 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L K + ++ Q LVIDE D + + + ++++++ +RQT+ SA+I
Sbjct: 228 GRLIDFHNKRLVNFDNCQTLVIDEADRMLDMG-FIPDVRRIVSWMPKKRDRQTLMFSATI 286
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
++N Q +VV + + + + + + KY L +LI+ ++
Sbjct: 287 SSD---VNNLSAQWCVDPEVVEAEADQV--TTDTVEQKVYLVTAEEKYNVLYNLIKENSD 341
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E +IF +SE K L D L + S D LLL ++ N R + L R
Sbjct: 342 ERIMIFANMKSETRK----------LADRLK---RNSIDCLLLSGDVPQNKRQSRLESFR 388
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
G +LV+TD+A RGI + +++ N+ LP DY+HR GRTGR
Sbjct: 389 TGKVKVLVATDVAGRGIHIDGISYVVNYTLPYEPEDYVHRIGRTGR 434
>gi|373427215|gb|AEY68604.1| vasa [Paralichthys olivaceus]
Length = 646
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L+ ++ LV+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 343 GRLLDMIGRGKVGLQKLRYLVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 401
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + K D + + V + S + FV K +K + LL L++
Sbjct: 402 TYPEDIQRL----AADFLKIDYLFLAVGVVGGACSDVEQSFVEVTKFLKREQLLDLLKIT 457
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV E ++A + FL ++ + E+ R +L +
Sbjct: 458 GMERTMVFV----ETKRQA------DFIAAFLCQEKVPTTSIHGDREQ---RERELALTD 504
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 505 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGR 552
>gi|443325427|ref|ZP_21054123.1| DNA/RNA helicase, superfamily II [Xenococcus sp. PCC 7305]
gi|442794981|gb|ELS04372.1| DNA/RNA helicase, superfamily II [Xenococcus sp. PCC 7305]
Length = 494
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 128/266 (48%), Gaps = 35/266 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+E+ L+ ++V V+DE D + S + +KK+L S RQT SA++
Sbjct: 130 GRIIDLLERGKLHLDQLKVAVLDEADEML-SMGFIDDVKKIL--RQSPETRQTACFSATL 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + I Q T VV V P +++ K+Q L +++ + P
Sbjct: 187 P---REIKELISQFLTSPVVVKVKQQDAAPT-RIDQKVYMVPRGWQKHQALQPILEIEEP 242
Query: 122 ESGIIFV------GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
++ IIFV E + K ++AG++ + Y G+ ++ R
Sbjct: 243 DTAIIFVRTKRTASELTIKLQEAGHS----------VDEYHGN---------LSQIQRER 283
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+ R G ++V+TDIAARG+D+ TH+ N+DLP +A Y+HR GRTGR + +
Sbjct: 284 LVKRFRDGKVKMIVATDIAARGLDVENLTHVINYDLPDNAETYIHRIGRTGR---AGKTG 340
Query: 236 TVTSIITSEELFVLQRYENELKFKSE 261
T ++I + +L++ E L+ + E
Sbjct: 341 TAIALIQPMDRRMLKQIERRLRVRLE 366
>gi|257896496|ref|ZP_05676149.1| helicase [Enterococcus faecium Com12]
gi|257833061|gb|EEV59482.1| helicase [Enterococcus faecium Com12]
Length = 503
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 118/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL +VQ LV+DE D + N + ++K++ + + RQT+ SA++
Sbjct: 128 GRMLDHINRHTLKLGTVQTLVLDEADEMLNMG-FLEDIEKII--FQVPDQRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ KS HV + A + + +V + K+ + L P
Sbjct: 185 PPAIK----NIGVKFMKSPH-HVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + Y+ + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYRAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 SGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMDYLHVIEN 356
>gi|421857957|ref|ZP_16290247.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
gi|410832484|dbj|GAC40684.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
Length = 418
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 122/256 (47%), Gaps = 27/256 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LIE K+ V+++V+DEVD L + +A S+ +RQ +F SA++
Sbjct: 123 GRIRELIEMRKLKMHEVRMIVVDEVDHLLQKG---GARDTDMAIRSALRDRQLLFFSATL 179
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
PQ R L Q + + K + + H +V ++ K + LI+ P
Sbjct: 180 PQEVRELAGRFMQ-----SPAQIGIEPDKRMADTIQHLYVAV-ERDKIDMVRRLIRLWNP 233
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSN-SYKGSSDVLLLEEEMNFNSRAASLLEV 180
+ I FV + T + ++ + SY G S V L + R A L
Sbjct: 234 KRAIAFVND-------------TNHIGEWEAKLSYVGLS-VASLYGDAPKQERTAVLRRF 279
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R+G +L++TD+AARG+D+ + + + + A Y+HRAGRTGR + T ++
Sbjct: 280 REGQVQVLLATDVAARGLDITDLPLVISIEPALDAEHYIHRAGRTGR---MGRQGTSVNL 336
Query: 241 ITSEELFVLQRYENEL 256
IT +E F++ ++E EL
Sbjct: 337 ITPQERFIMGKFEREL 352
>gi|421588772|ref|ZP_16034016.1| ATP dependent RNA helicase [Rhizobium sp. Pop5]
gi|403706463|gb|EJZ21720.1| ATP dependent RNA helicase [Rhizobium sp. Pop5]
Length = 499
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P + L + Q + +V A + RFV K K L L++
Sbjct: 187 TMPPEIQKLADRFLQNPERVEVAKPASAA-----KTVTQRFVASHSKDYEKRAVLRELVR 241
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ IIF + + + D + + V L +M+ SR
Sbjct: 242 AQGELKNAIIFCNRKKD-------------VADLFRSLERHGFSVGALHGDMDQRSRTTM 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S +T
Sbjct: 289 LQNFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFT 348
Query: 237 VTS 239
+ +
Sbjct: 349 LVT 351
>gi|207367146|dbj|BAG72093.1| vasa [Trachurus japonicus]
Length = 657
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + LE ++ LV+DE D + + + +++L+ S + NR T+ SA
Sbjct: 355 GRLLDVIGRGKVGLEKLRYLVLDEADRMLDMGFE-PDMRRLVGSPGMPTKENRNTLMFSA 413
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + + + K+D + + V + S + F+ K K + L+ L+++
Sbjct: 414 TYPEDIQRMA----ADFLKTDYLFLAVGVVGGACSDVEQTFIEVTKFSKREQLVDLLKAT 469
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV E ++A + FLS + ++ + E+ R +L +
Sbjct: 470 GSERTMVFV----ETKRQA------DFIATFLSQTKIPTTSIHGDREQ---REREQALAD 516
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 517 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGR 564
>gi|428208465|ref|YP_007092818.1| DEAD/DEAH box helicase [Chroococcidiopsis thermalis PCC 7203]
gi|428010386|gb|AFY88949.1| DEAD/DEAH box helicase domain protein [Chroococcidiopsis thermalis
PCC 7203]
Length = 482
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 32/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+++ KL+ V+ +V+DE D + S + ++K+LAS + RQT SA++
Sbjct: 130 GRVIDLLDRGNLKLDKVKFVVLDEADEML-SMGFIDDVEKILAS--APKERQTALFSATM 186
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHH-RFVICGKKMKYQTLLSL 115
P +FLH+ V V V+ K P+ + +++ K + L +
Sbjct: 187 PSAIQMLVGKFLHSP----------VTVTVDQPKAAPTKISQVAYLVPRHWTKARALQPI 236
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
++ + PES IIFV + K A + S + ++ Y G ++ +R
Sbjct: 237 LELEDPESAIIFV----KTRKTAADLTSQLQASGYSADEYHG---------DLTQQARER 283
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L R +++TDIAARG+D+ TH+ N+DLP S Y+HR GRTGR
Sbjct: 284 LLSRFRNKQVRWVIATDIAARGLDVDHLTHVINYDLPDSVETYVHRIGRTGR 335
>gi|347751920|ref|YP_004859485.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
coagulans 36D1]
gi|347584438|gb|AEP00705.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
Length = 475
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 126/261 (48%), Gaps = 34/261 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL+ V LV+DE D + N + ++ +L++ +RQT+ SA++
Sbjct: 129 GRILDHIHRGTLKLDHVHTLVLDEADEMLNMG-FIDDIEAILSTVP--KDRQTMLFSATM 185
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF++N ++V V + +PS + +V ++ K+ L L+
Sbjct: 186 PDPIRKIAERFMNN--------PELVRVKAKEMT-VPSIEQY-YVKVQEREKFDVLSRLL 235
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+P+ I+F G + + NA + L +L+ G +++ R +
Sbjct: 236 DVQSPDLAIVF-GRTKRRVDELANALN---LRGYLAEGIHG---------DLSQAKRLSV 282
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + +
Sbjct: 283 LRKFKDGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGREGM 339
Query: 237 VTSIITSEELFVLQRYENELK 257
+ +T E+ L+ E K
Sbjct: 340 AMTFVTPREMGYLKTVEQTTK 360
>gi|16799933|ref|NP_470201.1| hypothetical protein lin0859 [Listeria innocua Clip11262]
gi|217965039|ref|YP_002350717.1| DEAD/DEAH box helicase [Listeria monocytogenes HCC23]
gi|290892943|ref|ZP_06555933.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
gi|386026184|ref|YP_005946960.1| putative ATP-dependent RNA helicase [Listeria monocytogenes M7]
gi|16413310|emb|CAC96091.1| lin0859 [Listeria innocua Clip11262]
gi|217334309|gb|ACK40103.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Listeria monocytogenes HCC23]
gi|290557519|gb|EFD91043.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
gi|336022765|gb|AEH91902.1| putative ATP-dependent RNA helicase [Listeria monocytogenes M7]
Length = 516
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL+ V+ LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 129 GRILDHINRRTLKLDHVETLVLDEADEMLNMGF-IDDIETILKEVPA--ERQTLLFSATM 185
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ +++ + + L + FV +K K+ L L+
Sbjct: 186 PDPIRRIGERFMHS--------PELIRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 235
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE I+F ++K+ + S L + +++ G ++ R +
Sbjct: 236 DVQAPELAIVF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 281
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 282 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 333
>gi|421490441|ref|ZP_15937813.1| DEAD/DEAH box helicase [Streptococcus anginosus SK1138]
gi|400372931|gb|EJP25866.1| DEAD/DEAH box helicase [Streptococcus anginosus SK1138]
Length = 534
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 32/253 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL V+ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 144 GRLLDLIKRKALKLNHVETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 199
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 200 MP-------DAIKRIGVKFMKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 252
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 253 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRTEGIHG---------DLDQGKRLRVL 298
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 299 RDFKNGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 357
Query: 238 TSIITSEELFVLQ 250
+ E+ LQ
Sbjct: 358 --FVAPNEMGYLQ 368
>gi|336115431|ref|YP_004570198.1| DEAD/DEAH box helicase [Bacillus coagulans 2-6]
gi|335368861|gb|AEH54812.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 2-6]
Length = 475
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 125/261 (47%), Gaps = 34/261 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL+ V LV+DE D + N + ++ +L++ +RQT+ SA++
Sbjct: 129 GRILDHIHRGTLKLDHVHTLVLDEADEMLNMG-FIDDIEAILSTVP--KDRQTMLFSATM 185
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF++N ++V V + +PS + ++ ++ K+ L L+
Sbjct: 186 PDPIRKIAERFMNN--------PELVRVKAKEMT-VPSIEQY-YIKVQEREKFDVLSRLL 235
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+P+ I+F G + + NA L +L+ G +++ R +
Sbjct: 236 DVQSPDLAIVF-GRTKRRVDELANA---LTLRGYLAEGIHG---------DLSQAKRLSV 282
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + +
Sbjct: 283 LRKFKDGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGREGM 339
Query: 237 VTSIITSEELFVLQRYENELK 257
+ +T E+ L+ E K
Sbjct: 340 AMTFVTPREMGYLKTVEQTTK 360
>gi|226223484|ref|YP_002757591.1| ATP-dependent RNA helicase [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|386731620|ref|YP_006205116.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 07PF0776]
gi|417314932|ref|ZP_12101623.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J1816]
gi|417317100|ref|ZP_12103725.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J1-220]
gi|225875946|emb|CAS04650.1| Putative ATP-dependent RNA helicase [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|328467139|gb|EGF38229.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J1816]
gi|328475471|gb|EGF46234.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J1-220]
gi|384390378|gb|AFH79448.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 07PF0776]
Length = 517
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL+ V+ LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 129 GRILDHINRRTLKLDHVETLVLDEADEMLNMGF-IDDIETILKEVPA--ERQTLLFSATM 185
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ +++ + + L + FV +K K+ L L+
Sbjct: 186 PDPIRRIGERFMHS--------PELIRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 235
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE I+F ++K+ + S L + +++ G ++ R +
Sbjct: 236 DVQAPELAIVF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 281
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 282 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 333
>gi|398380059|ref|ZP_10538177.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
gi|397721375|gb|EJK81923.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
Length = 498
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 113/248 (45%), Gaps = 38/248 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + +V++ VIDE D + + + + KL+ RQT+F SA
Sbjct: 124 GRLLDHFERGKLLMSAVEIFVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 178
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKM-KYQTL 112
++P RFL N + V V+A + RFV GK K L
Sbjct: 179 TMPAEIQKLADRFLQNPER----------VEVSAPASTAKTVTQRFVASHGKDYEKRAAL 228
Query: 113 LSLIQSDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFN 171
LI++ ++ IIF + + + D + + V L +M+
Sbjct: 229 RDLIRAQTDLKNAIIFCNRKVD-------------VADLFRSLQRHGFSVGALHGDMDQR 275
Query: 172 SRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS 231
SR L R G LLV++D+AARG+DLP+ H++NFD+P + DY+HR GRTGR S
Sbjct: 276 SRTTMLQNFRDGQIQLLVASDVAARGLDLPDVGHVFNFDVPIHSEDYVHRIGRTGRAGRS 335
Query: 232 DEKWTVTS 239
+T+ +
Sbjct: 336 GAAFTLVT 343
>gi|389720718|ref|ZP_10187537.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. HA]
gi|388609402|gb|EIM38574.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. HA]
Length = 383
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 127/271 (46%), Gaps = 28/271 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +E+ L+ ++ LVIDE D L + + S+K+++ RQT+ SA+
Sbjct: 138 GRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGF-IPSVKRIVRFSPRKEQRQTLMFSAT- 195
Query: 62 PQHRRFLHNCIQ--QKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
F ++ + Q+W + V V + K + + R + K KY+ L +++ +
Sbjct: 196 -----FSYDVLNLAQQWL-FEPVTVEIEPEKKTNADVEQRVYMVAKADKYKLLQDILRDE 249
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRAASLL 178
E +IF + + K L D L ++YK V++L E+ + R L
Sbjct: 250 PIEKVMIFANRRDQVRK----------LYDHLKRDNYK----VVMLSGEIAQDKRLKMLD 295
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G ++++TD+A RGI + +H+ NF LP + DY+HR GRTGR + +
Sbjct: 296 QFKNGKHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGR---AGTRGVSI 352
Query: 239 SIITSEELFVLQRYENELKFKSEELTLQTQC 269
S ++ ++ F L E + K L+ C
Sbjct: 353 SFLSEDDAFYLPEIEKAIGQKLPLTRLEGYC 383
>gi|422667305|ref|ZP_16727169.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|330977878|gb|EGH77781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 445
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNR-QTVFAS 58
G L + + L+ V+VLV+DE D + + S+ V L C R QT+ S
Sbjct: 130 GRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERL------AGECAGREQTMLFS 183
Query: 59 ASIPQH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSL 115
A+ R + ++ D H+ VN++ L S H+ + + K Q L L
Sbjct: 184 ATTGGAGLREMIGKVLK------DPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWL 237
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ ++ + IIF + A + L ++ YK +L + + R A
Sbjct: 238 LANETYQKAIIFTNTR---------AMADRLYCRLVALEYK----AFVLHGDKDQKDRKA 284
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++ ++QGG ++V+TD+AARG+D+ + NFD+PRS DY+HR GRTGR
Sbjct: 285 AIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGR 336
>gi|27379459|ref|NP_770988.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110]
gi|27352611|dbj|BAC49613.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110]
Length = 500
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 115/252 (45%), Gaps = 43/252 (17%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL+ RQT+F +A
Sbjct: 131 GRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPF-----TRQTLFFTA 185
Query: 60 SIPQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLS 114
++P R FLHN + + +K V V + V GKK + L
Sbjct: 186 TMPPEIRRITETFLHNPQKVEVSKPATTAVTVTQSQ----------VPAGKKAHEKRELL 235
Query: 115 LIQSDAPE---SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNF 170
+ + IIF + E V + S K V L +M+
Sbjct: 236 RRLLREAKDLKNAIIFCNRKRE--------------VAIVHKSLQKHGFSVGALHGDMDQ 281
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R A+L + R+G LLV++D+AARG+D+PE +H++NFD+P DY+HR GRTGR
Sbjct: 282 PARMAALEQFRKGELPLLVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGR--- 338
Query: 231 SDEKWTVTSIIT 242
+ T SI+T
Sbjct: 339 AGRSGTAISIVT 350
>gi|295702900|ref|YP_003595975.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
gi|294800559|gb|ADF37625.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
Length = 481
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 121/260 (46%), Gaps = 30/260 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + IEK LE ++ LVIDE D + N QV ++ + L S R T+ SA
Sbjct: 131 GRVLDHIEKETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQHLPS-----ERVTMLFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDV-VHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
++P+ L +K+ K V V + N + S + H + G + K++ L +
Sbjct: 186 TLPEDIEEL----SRKYMKKPVDVEIKANGL--TTSTIDHSVISVGNERKFELLKDVTTV 239
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ P+S IIF Q + + + D + + +++E+ R +
Sbjct: 240 ENPDSCIIFCRTQEQVNTLLDDLDDLGYPCDKIHGA--------MVQED-----RFEVMN 286
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ ++G LV+TD+AARGID+ TH+ N+DLP Y+HR GRTGR + +K
Sbjct: 287 DFKKGKFRYLVATDVAARGIDIDNITHVINYDLPLEKESYVHRTGRTGR---AGKKGKAI 343
Query: 239 SIITSEELFVLQRYENELKF 258
+ +T E +L E + F
Sbjct: 344 TFVTPYEERMLSEIEEYIGF 363
>gi|223937455|ref|ZP_03629359.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
gi|223893806|gb|EEF60263.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
Length = 645
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 127/266 (47%), Gaps = 24/266 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + + + +L+ V+++++DE D + + + ++ +L + + RQTVF SA++
Sbjct: 132 GRVMDHMRRGTLRLDQVKMVILDEADVMLDMGFR-EDIEFILQAVPT--ERQTVFFSATM 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + IQ+ V + A+ +P+ + F ++ K + L LI
Sbjct: 189 P---RPIQELIQKYARDPQSVRIEQKAMT-VPT-VEQFFYEVDRRFKVELLTRLIDIHDL 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ GI+F + LVD L N+ S+D L +M+ R + + R
Sbjct: 244 KLGIVFCNTKR----------MVDDLVDHL-NAQGYSAD--RLHGDMSQAMRDRVMNKFR 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+ G LV+TD+AARGID+ + ++N+DLP A DY+HR GRTGR + S +
Sbjct: 291 KSGLEFLVATDVAARGIDVDDVQVVFNYDLPYDAEDYVHRIGRTGR---AGRSGRAISFV 347
Query: 242 TSEELFVLQRYENELKFKSEELTLQT 267
ELF +Q E K K + + T
Sbjct: 348 AGRELFQIQHIERFTKMKIQRAKIPT 373
>gi|116872279|ref|YP_849060.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116741157|emb|CAK20277.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 518
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL+ V+ LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 129 GRILDHINRRTLKLDHVETLVLDEADEMLNMGF-IDDIETILKEVPA--ERQTLLFSATM 185
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ +++ + + L + FV +K K+ L L+
Sbjct: 186 PDPIRRIGERFMHS--------PELIRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 235
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE I+F ++K+ + S L + +++ G ++ R +
Sbjct: 236 DVQAPELAIVF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 281
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 282 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 333
>gi|408492694|ref|YP_006869063.1| ATP-dependent large subunit ribosomal RNA helicase DbpA-like
protein [Psychroflexus torquis ATCC 700755]
gi|408469969|gb|AFU70313.1| ATP-dependent large subunit ribosomal RNA helicase DbpA-like
protein [Psychroflexus torquis ATCC 700755]
Length = 443
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 130/268 (48%), Gaps = 33/268 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSK-QVSSLKKLLASYSSCNNRQTVFASAS 60
G L LI++ L+ ++ +V+DE D + ++ K +V ++ K + R+T+ +A+
Sbjct: 132 GRLLDLIKREAIDLKHLKYVVLDEADEMLSALKFEVDTIIKAIP-----KTRRTLLFTAT 186
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+ + L Q + D+V + V+ + H +V+ K LL + S
Sbjct: 187 MSGTVKQL----VQNYMSKDLVTIEVDTTTLGHQGIDHHYVVVEPIEKLDVLLHFLNSKG 242
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E GIIF K+K A N + L ++ F S + GS + R + +
Sbjct: 243 GERGIIFC-----KTKAAVNKLAKKLAINKFSSGAIHGS---------LTQGIRDRIMGQ 288
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R+G +LV+TD+AARGID+ E +++ N+ LP + Y+HR+GRT R + K +
Sbjct: 289 FREGHIDILVATDLAARGIDVKEVSYVVNYHLPDTYEAYVHRSGRTAR---AGAKGLSLT 345
Query: 240 IITSEELFVLQRYENEL-----KFKSEE 262
I+ EE+ + +ENEL KFK +
Sbjct: 346 ILQHEEIAEITDFENELGIVFHKFKKAD 373
>gi|440741996|ref|ZP_20921326.1| helicase [Pseudomonas syringae BRIP39023]
gi|440378082|gb|ELQ14712.1| helicase [Pseudomonas syringae BRIP39023]
Length = 445
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNR-QTVFAS 58
G L + + L+ V+VLV+DE D + + S+ V L C R QT+ S
Sbjct: 130 GRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERL------AGECAGREQTMLFS 183
Query: 59 ASIPQH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSL 115
A+ R + ++ D H+ VN++ L S H+ + + K Q L L
Sbjct: 184 ATTGGAGLREMIGKVLK------DPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWL 237
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ ++ + IIF ++ + G ++ YK +L + + R A
Sbjct: 238 LANETYQKAIIFTNTKAMADRLYGR---------LVALEYK----AFVLHGDKDQKDRKA 284
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++ ++QGG ++V+TD+AARG+D+ + NFD+PRS DY+HR GRTGR
Sbjct: 285 AIDRLKQGGAKVMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGR 336
>gi|433462122|ref|ZP_20419714.1| ATP-dependent RNA helicase YfmL [Halobacillus sp. BAB-2008]
gi|432189235|gb|ELK46358.1| ATP-dependent RNA helicase YfmL [Halobacillus sp. BAB-2008]
Length = 381
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 124/257 (48%), Gaps = 28/257 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K K + +V+DE D L + + +++ +L S + + Q + SA++
Sbjct: 132 GRVYELIQKKKLKAHEMHAVVMDEADQLL-VPEHIQTVENVLKS--TRKDTQILLFSATL 188
Query: 62 PQHRRFLHNCIQQKWTKSD--VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
P + Q + K D V+ V A KP + H ++ C + K + + L +D
Sbjct: 189 PD----TVIDVAQSFMKEDAEVIRVQEEAQKP---AVTHTYIACSDRDKVELVRKLSYTD 241
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
G+ F+ + ++ + A L D+ LL + RA ++ E
Sbjct: 242 G-FFGLAFLQDIAKLNIMAEKLTYHKL-------------DIGLLHSDAKKEHRAKAIRE 287
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
RQG LL++TD+AARG+D+ E I N D+P+ Y+HRAGRTGR E+ TV S
Sbjct: 288 FRQGQYPLLLATDVAARGLDIQEINCIINLDMPKDRTSYIHRAGRTGR--IGSEEGTVVS 345
Query: 240 IITSEELFVLQRYENEL 256
++ E L++Y +L
Sbjct: 346 LVNPVEEKRLKKYARDL 362
>gi|153009579|ref|YP_001370794.1| DEAD/DEAH box helicase [Ochrobactrum anthropi ATCC 49188]
gi|151561467|gb|ABS14965.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
49188]
Length = 498
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 127/273 (46%), Gaps = 42/273 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 146 GRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 200
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P +FLH+ T+ +V A + R V KK K L
Sbjct: 201 TMPPEITKLTEQFLHSP-----TRVEVAKASSTA-----KTVTQRLVKSSKKDWDKRAVL 250
Query: 113 LSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
L+++ D ++ IIF + + S+ L + + + L +M+
Sbjct: 251 RDLVRAEGDTLKNAIIFCNRKKDVSE---------LFRSLTRHEFNAGA----LHGDMDQ 297
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R L ++G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR
Sbjct: 298 RARMTMLANFKEGKLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGR 357
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSEEL 263
S + +T I+T + L EN + K E L
Sbjct: 358 SGKAFT---IVTPSDTKYLAAIENMIGEKIEWL 387
>gi|160331647|ref|XP_001712530.1| rrp3 [Hemiselmis andersenii]
gi|159765979|gb|ABW98205.1| rrp3 [Hemiselmis andersenii]
Length = 398
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 124/254 (48%), Gaps = 27/254 (10%)
Query: 2 GSLCQLIEKHI-FKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASA 59
G L + +EK + K++ +++LVIDE D LF Q+ K+ +S N+Q++F SA
Sbjct: 129 GRLIEHLEKFLKNKIKKLEILVIDEADRLF----QLDFKKEFSIIFSELPKNKQSLFFSA 184
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++ + L N QK + V + +N + L ++ +K+K + L
Sbjct: 185 TMSLN---LENL--QKNNMKNPVKIQINRKYKVVKTLQQNYIFIPQKLKDCYFIYLCNEF 239
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
S ++FV Q KK TLL FL + + L MN N R L +
Sbjct: 240 NGSSILVFVDTQKCAEKK-------TLLAKFLGFNAE------YLHGGMNQNKRLEILQK 286
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R G +L++TD+A+RG+D+P + N+DLP A +YLHR GRT R + + +
Sbjct: 287 FRFGKIKILIATDLASRGLDIPNVDLVLNYDLPHLAKEYLHRVGRTAR---AGKSGRTIN 343
Query: 240 IITSEELFVLQRYE 253
I+T ++ + Q+ E
Sbjct: 344 IVTQYDIHLCQKIE 357
>gi|408355702|ref|YP_006844233.1| ATP-dependent RNA helicase [Amphibacillus xylanus NBRC 15112]
gi|407726473|dbj|BAM46471.1| ATP-dependent RNA helicase [Amphibacillus xylanus NBRC 15112]
Length = 483
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 126/267 (47%), Gaps = 26/267 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + + V+ +V+DE D + N + ++++L + RQT+ SA++
Sbjct: 129 GRLLDHMRRKTINISDVKTIVLDEADEMLNMG-FIDDIREILKMIP--HERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R + + + ++ + V ++ + RF+ +K K+ L +L+ P
Sbjct: 186 PKEIRQIASTMMREPKEVKVKSKQLSV-----ENIEQRFIEVHEKQKFDALTNLLDIHVP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
E IIF ++KK VD L++ + + ++ R + L +
Sbjct: 241 ELAIIF-----GRTKKR---------VDELTDGLQARGFRAEGIHGDLTQGKRMSVLNKF 286
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + S
Sbjct: 287 KNGRIEILVATDVAARGLDISNVTHVYNFDIPQDPESYVHRIGRTGR---AGKTGVAISF 343
Query: 241 ITSEELFVLQRYENELKFKSEELTLQT 267
IT E+ L+ E K + + + T
Sbjct: 344 ITPREMPHLKLIEKVTNAKVKRMDMPT 370
>gi|407717120|ref|YP_006838400.1| DEAD/DEAH box helicase [Cycloclasticus sp. P1]
gi|407257456|gb|AFT67897.1| DEAD/DEAH box helicase domain-containing protein [Cycloclasticus
sp. P1]
Length = 420
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 37/235 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G ++ +F L + +VLV+DE D +F+ ++ ++ LL NR + SA++
Sbjct: 141 GRTIDFFKQKVFNLRNTEVLVLDEADRMFDLG-FINDIRYLLRRLPKPENRLNLLFSATL 199
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVN---AIKPLPSCLHHRFVI-----CGKKMKYQTLL 113
+ +++ + H+N ++ P + + V+ K LL
Sbjct: 200 -------------SFKVTELAYEHMNNPVMVRVEPEQITAKQVVESVYYPADNEKIPLLL 246
Query: 114 SLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNS 172
L+ ++ PE GIIF+ +T D L KG+ D +L ++
Sbjct: 247 HLLTNEKPERGIIFI--------------NTKHTADRLHRYLKGNDFDNAVLSGDVPQKK 292
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R L + G LL++TD+AARG+ +P +H++NFDLP+ A DY+HR GRT R
Sbjct: 293 RQTILTRFQDGKLPLLIATDVAARGLHIPAVSHVFNFDLPQDAEDYVHRIGRTAR 347
>gi|347548270|ref|YP_004854598.1| putative ATP-dependent RNA helicase [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346981341|emb|CBW85290.1| Putative ATP-dependent RNA helicase [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 522
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL++V+ +V+DE D + N + ++ +L + RQT+ SA++
Sbjct: 129 GRILDHINRRTLKLDNVETIVLDEADEMLNMG-FIDDIETILKEVPA--ERQTLLFSATM 185
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ +++ + + L + FV +K K+ L L+
Sbjct: 186 PDPIRRIGERFMHS--------PELIRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 235
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE I+F ++K+ + S L + +++ G ++ R +
Sbjct: 236 DVQAPELAIVF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 281
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 282 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 333
>gi|302188635|ref|ZP_07265308.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. syringae
642]
gi|443642767|ref|ZP_21126617.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. syringae
B64]
gi|443282784|gb|ELS41789.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. syringae
B64]
Length = 445
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNR-QTVFAS 58
G L + + L+ V+VLV+DE D + + S+ V L C R QT+ S
Sbjct: 130 GRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERL------AGECAGREQTMLFS 183
Query: 59 ASIPQH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSL 115
A+ R + ++ D H+ VN++ L S H+ + + K Q L L
Sbjct: 184 ATTGGAGLREMIGKVLK------DPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWL 237
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ ++ + IIF ++ + G ++ YK +L + + R A
Sbjct: 238 LANETYKKAIIFTNTKAMADRLYGR---------LVALEYK----AFVLHGDKDQKDRKA 284
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++ ++QGG ++V+TD+AARG+D+ + NFD+PRS DY+HR GRTGR
Sbjct: 285 AIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGR 336
>gi|149181221|ref|ZP_01859720.1| ATP-dependent RNA helicase (D-E-A-D box family) protein [Bacillus
sp. SG-1]
gi|148851120|gb|EDL65271.1| ATP-dependent RNA helicase (D-E-A-D box family) protein [Bacillus
sp. SG-1]
Length = 373
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 134/263 (50%), Gaps = 35/263 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+ K+ V+ +V+DE D + + + ++++++++ S + +RQ +F SA++
Sbjct: 127 GRIMELIKMKKLKMHEVKTIVVDEFDLMIGN-EHINNVRQVIKS--TMADRQLLFFSATL 183
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ + + + + +V+ V+ + S + H +++ ++ K + L L +
Sbjct: 184 SDSTDKVASELMEDY---EVIRVNQGVVSS--SQVEHGYLLSEQRDKIEVLRKLSNVEGI 238
Query: 122 ESGIIF-----VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
++ + F + E EK K Y+ ++ V +L E R S
Sbjct: 239 KALVFFNSLERLSEAEEKLK------------------YQKAA-VEVLAGESKKTERKHS 279
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + R G +L++TD+AARG+D+ TH+ +F+ P A Y+HR+GRTGR S T
Sbjct: 280 LDKFRAGKVPMLLTTDVAARGLDISGVTHVIHFEFPTDAKQYIHRSGRTGRMGASG---T 336
Query: 237 VTSIITSEELFVLQRYENELKFK 259
V SI+T E L++ +ELKF+
Sbjct: 337 VISIVTKREESFLEKMADELKFE 359
>gi|404320397|ref|ZP_10968330.1| DEAD/DEAH box helicase [Ochrobactrum anthropi CTS-325]
Length = 484
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 127/273 (46%), Gaps = 42/273 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P +FLH+ T+ +V A + R V KK K L
Sbjct: 187 TMPPEITKLTEQFLHSP-----TRVEVAKASSTA-----KTVTQRLVKSSKKDWDKRAVL 236
Query: 113 LSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
L+++ D ++ IIF + + S+ L + + + L +M+
Sbjct: 237 RDLVRAEGDTLKNAIIFCNRKKDVSE---------LFRSLTRHEFNAGA----LHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R L ++G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR
Sbjct: 284 RARMTMLANFKEGKLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSEEL 263
S + +T I+T + L EN + K E L
Sbjct: 344 SGKAFT---IVTPSDTKYLAAIENMIGEKIEWL 373
>gi|424881770|ref|ZP_18305402.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392518133|gb|EIW42865.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 520
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 138 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 192
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKMKYQTLL-SLIQ 117
++P + L + Q + +V A + + RFV GK + + +L L++
Sbjct: 193 TMPSEIQKLADRFLQNPERIEVAKPASAA-----ATVTQRFVASHGKDYEKRAVLRELVR 247
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ I+F + + + D + + V L +M+ SR +
Sbjct: 248 AQTELKNAIVFCNRKKD-------------VADLFRSLERHGFSVGALHGDMDQRSRTMT 294
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S +T
Sbjct: 295 LQSFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFT 354
Query: 237 VTS 239
+ +
Sbjct: 355 LVT 357
>gi|422808949|ref|ZP_16857360.1| Cold-shock DEAD-box protein A [Listeria monocytogenes FSL J1-208]
gi|378752563|gb|EHY63148.1| Cold-shock DEAD-box protein A [Listeria monocytogenes FSL J1-208]
Length = 516
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL+ V+ LV+DE D + N + ++ +L + RQT+ SA++
Sbjct: 129 GRILDHINRRTLKLDHVETLVLDEADEMLNMGF-IDDIETILKEVPA--ERQTLLFSATM 185
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+H+ +++ + + L + FV +K K+ L L+
Sbjct: 186 PDPIRRIGERFMHS--------PELIRIKAKEMTAL--LIEQFFVKVHEKEKFDVLSRLL 235
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
APE I+F ++K+ + S L + +++ G ++ R +
Sbjct: 236 DVQAPELAIVF-----GRTKRRVDELSRALDMRGYVAEGIHG---------DLTQAKRMS 281
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 282 VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 333
>gi|428211079|ref|YP_007084223.1| DNA/RNA helicase [Oscillatoria acuminata PCC 6304]
gi|427999460|gb|AFY80303.1| DNA/RNA helicase, superfamily II [Oscillatoria acuminata PCC 6304]
Length = 484
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 130/259 (50%), Gaps = 29/259 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+ + KL+++ LV+DE D + S + ++K+LA + +RQT F SA++
Sbjct: 130 GRVLDLLNRGHLKLDTLTHLVLDEADEML-SMGFIDDVEKILAR--APKDRQTAFFSATM 186
Query: 62 -PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSLIQSD 119
P R+ ++ ++ D V V ++ K P + + + K + LL +++ +
Sbjct: 187 EPSIRKLMNKFMR------DPVTVKIDQQKSTPKQIDQVIYMVPRGWSKSRALLPILELE 240
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRAASLL 178
PE+ I+FV ++++A ++ L S + Y G ++N + R +
Sbjct: 241 DPETAIVFV-----RTRRAAAELTSQLQAAGHSVDEYHG---------DLNQSQRERLID 286
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
R+ +V+TDIAARG+D+ TH+ N+DLP Y+HR GRTGR + + T
Sbjct: 287 RFRKQQVRWIVATDIAARGLDVDHLTHVINYDLPDQVESYVHRIGRTGR---AGREGTAI 343
Query: 239 SIITSEELFVLQRYENELK 257
S+I + LQ+ E L+
Sbjct: 344 SLIQPFDRRKLQQIERHLR 362
>gi|386712716|ref|YP_006179038.1| DEAD/DEAH box helicase [Halobacillus halophilus DSM 2266]
gi|384072271|emb|CCG43761.1| DEAD-box ATP-dependent RNA helicase CshA [Halobacillus halophilus
DSM 2266]
Length = 490
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 121/265 (45%), Gaps = 26/265 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + KL++V V+DE D + N + ++ +L + RQT+ SA++
Sbjct: 128 GRLLDHIRRKTIKLQNVHTAVLDEADEMLNMG-FIEDIRDILKALPE--ERQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R + + ++ V V + + + FV +K K+ TL L+ P
Sbjct: 185 PKEIRDIATTLM-----NNPEEVKVKSKEMTVENIEQYFVEIPEKHKFDTLTRLLDIHDP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
I+F T VD +++ + + ++ R ++L +
Sbjct: 240 ALAIVF--------------GRTKRRVDEVADGLQARGFSAEGIHGDLTQGKRMSTLNKF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G +LV+TD+AARG+D+ E +H+YNFD+P+ Y+HR GRTGR + K S
Sbjct: 286 KRGRIEILVATDVAARGLDISEVSHVYNFDIPQDPESYVHRIGRTGR---AGRKGESISF 342
Query: 241 ITSEELFVLQRYENELKFKSEELTL 265
+T E L E K K E L +
Sbjct: 343 VTPREKDQLNLIEKLTKKKVERLKV 367
>gi|209549507|ref|YP_002281424.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|424913801|ref|ZP_18337165.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|209535263|gb|ACI55198.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|392849977|gb|EJB02498.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 505
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 132 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P + L + Q + +V A + RFV K K L L++
Sbjct: 187 TMPPEIQKLADRFLQNPERIEVAKPASAA-----KTVTQRFVASHSKDYEKRAVLRELVR 241
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ IIF + + + D + + V L +M+ SR +
Sbjct: 242 AQTELKNAIIFCNRKKD-------------VADLFRSLERHGFSVGALHGDMDQRSRTMT 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S +T
Sbjct: 289 LQSFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGASFT 348
Query: 237 VTS 239
+ +
Sbjct: 349 LVT 351
>gi|77413593|ref|ZP_00789780.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 515]
gi|77160359|gb|EAO71483.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 515]
Length = 528
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 33/244 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHIETLILDEADEMLN----MGFLEDIEAIISRVPEARQTLLFSAT 183
Query: 61 IPQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSL 115
+P +F+ N K +++ +V+V+ +V + K+ T+ L
Sbjct: 184 MPDPIKRIGVKFMKNPEHVKIKATELTNVNVD----------QYYVRVKENEKFDTMTRL 233
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ D PE I+F ++ L F + G +++ N R
Sbjct: 234 MDVDQPELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLR 280
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+ + + +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S +
Sbjct: 281 VIRDFKNDHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSI 340
Query: 236 TVTS 239
T S
Sbjct: 341 TFVS 344
>gi|240850330|ref|YP_002971723.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
grahamii as4aup]
gi|240267453|gb|ACS51041.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
grahamii as4aup]
Length = 467
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 126/265 (47%), Gaps = 39/265 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL + RQT+F SA
Sbjct: 136 GRLLDHCERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKL-----TPFTRQTLFFSA 190
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++ ++FLH+ + + TK+ + + R V G K K L
Sbjct: 191 TMAPEITKLTKQFLHSPVSVEVTKASST----------ATTITQRLVKSGSKSWDKRAVL 240
Query: 113 LSLIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LI ++ E + IIF + + S+ L + +++ V L +M+
Sbjct: 241 RELIHNEGAELQNAIIFCNRKRDISE---------LFRSLVRHNFS----VGALHGDMDQ 287
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
SR ++L + + LLV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 288 YSRMSTLADFKDNKLTLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANR 347
Query: 231 SDEKWTVTSIITSEELFVLQRYENE 255
S + +T+ + + + ++ NE
Sbjct: 348 SGKAFTIVTKADQKYINAIEEMSNE 372
>gi|430003796|emb|CCF19587.1| Putative ATP-dependent RNA helicase [Rhizobium sp.]
Length = 503
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 40/249 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 132 GRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTL 112
++P RFL N + V V+ + + R V K K TL
Sbjct: 187 TMPPEIQKLADRFLQNPER----------VEVSLPSSTATTVTQRLVAAHNKDYEKRATL 236
Query: 113 LSLI--QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LI Q D ++ IIF + + + D + + V L +M+
Sbjct: 237 RDLIKEQEDL-KNAIIFCNRKKD-------------VADLFRSLERHGFSVGALHGDMDQ 282
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
SR L R G LLV++D+AARG+DLP+ H++NFD+P A DY+HR GRTGR
Sbjct: 283 RSRTTMLQSFRDGEIQLLVASDVAARGLDLPDVGHVFNFDVPIHAEDYVHRIGRTGRAGR 342
Query: 231 SDEKWTVTS 239
S + +T+ +
Sbjct: 343 SGKAFTLVT 351
>gi|407939753|ref|YP_006855394.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
gi|407897547|gb|AFU46756.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
KKS102]
Length = 405
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 122/271 (45%), Gaps = 38/271 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L++ + +L +V LV+DE D L + L+++LA + RQ +F SA+
Sbjct: 113 GRLLDLVDHNALRLSAVAHLVLDEADRLLDLGF-AEELQRVLALLPA--RRQNLFFSATF 169
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L + + Q + +V H N + R + + Q L L++
Sbjct: 170 PAAVQALADGLLQNPVRVEVPHTLGNE-----PAIEQRAIAVDGSRRTQLLRHLVKEHNW 224
Query: 122 ESGIIFVGEQ------SEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
++FV Q +EK KAG + + G ++ +R
Sbjct: 225 SRVLVFVATQYAAEHVAEKLYKAG----------IYATPFHGG---------LSQGARNQ 265
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L E + ++V+TD+AARGID+ + + N+DLPRSA+DY+HR GRTGR + E
Sbjct: 266 VLQEFKDERWQVVVTTDLAARGIDIAQLPAVVNYDLPRSAVDYVHRIGRTGR---AGESG 322
Query: 236 TVTSIIT--SEELFVLQRYENELKFKSEELT 264
S +T +E F L L E++T
Sbjct: 323 MAVSFVTADAEAHFRLIEKRQHLTIPREQIT 353
>gi|444920074|ref|ZP_21239918.1| ATP-dependent RNA helicase RhlB [Wohlfahrtiimonas chitiniclastica
SH04]
gi|444508941|gb|ELV09109.1| ATP-dependent RNA helicase RhlB [Wohlfahrtiimonas chitiniclastica
SH04]
Length = 528
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 120/259 (46%), Gaps = 22/259 (8%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+G + ++ L+ ++V+V+DE D +F+ ++ ++ L RQ +F SA+
Sbjct: 140 VGRILDFYKQGELNLKEIEVVVLDEADRMFDLGF-IADIRYLFRKMPPVGQRQNMFFSAT 198
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
Q L K + H+ A K + V G K L +++ +
Sbjct: 199 FSQRILELAYEHMNMPEKVQIEAEHITADK-----IKQYLVHIGSSDKLSLLFGILRKEQ 253
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+ IIFV +K+ S L+ +N Y+ + +L ++ N R L
Sbjct: 254 PKRTIIFVN-----TKRVAEEISNYLV----ANDYQAA----VLSGDIPQNKRERLLESF 300
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G ++V+TD+AARG+ + + TH+ N+DLP+ DY+HR GRT R + E+ T S
Sbjct: 301 KEGKVSIMVATDVAARGLHISDVTHVINYDLPQDVEDYVHRIGRTAR---AGEEGTAISF 357
Query: 241 ITSEELFVLQRYENELKFK 259
E ++ L E ++ K
Sbjct: 358 ACEEYVYSLPDIEEYIEMK 376
>gi|238916937|ref|YP_002930454.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
gi|238872297|gb|ACR72007.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
Length = 381
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 119/250 (47%), Gaps = 26/250 (10%)
Query: 6 QLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASASIPQ 63
QLI K+ V+ LV+DE D LF+ + + V +++K L ++ Q + SAS+ +
Sbjct: 136 QLISNKKIKVHEVKTLVLDEADKLFDKTFIQDVEAIRKSLMKFT-----QVLLFSASVDK 190
Query: 64 HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPES 123
R C + + ++ + +PS + H VI ++ + +TL +I++ PE
Sbjct: 191 KTRTNTLCFKPIFID---INSNSGNTSQIPSTIKHISVISDRRERIETLRKIIKAVKPEK 247
Query: 124 GIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQG 183
IIFV + + L + L +V + + +++ A++ R G
Sbjct: 248 AIIFVNSKYD-------------LEESLQKLEYHHYNVASIAGNKDNSAKKAAIENFRSG 294
Query: 184 GGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITS 243
LL++TDIAARG+ + + N +LP +Y+HR GR GR + T SIIT
Sbjct: 295 KIQLLIATDIAARGLQIDNIDTVINVNLPEDNKEYIHRCGRCGR---NGNTGTCISIITD 351
Query: 244 EELFVLQRYE 253
EL ++ Y+
Sbjct: 352 NELNKIKSYQ 361
>gi|424895190|ref|ZP_18318764.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393179417|gb|EJC79456.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 505
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 132 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P + L + Q + +V A + RFV K K L L++
Sbjct: 187 TMPPEIQKLADRFLQNPERIEVAKPASAA-----KTVTQRFVASHSKDYEKRAVLRELVR 241
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ IIF + + + D + + V L +M+ SR +
Sbjct: 242 AQTELKNAIIFCNRKKD-------------VADLFRSLERHGFSVGALHGDMDQRSRTMT 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S +T
Sbjct: 289 LQSFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGASFT 348
Query: 237 VTS 239
+ +
Sbjct: 349 LVT 351
>gi|328781103|ref|XP_394925.4| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Apis
mellifera]
Length = 626
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 31/241 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+E I + S+ LV+DE D + + + K LL +RQTV SA+
Sbjct: 346 GRLNDLVEAKILNISSITYLVLDEADRMLDMGFEPQIRKTLLDIRP---DRQTVMTSATW 402
Query: 62 PQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
PQ R ++ N IQ D+ VH + + I ++ K +
Sbjct: 403 PQGVRRLAQSYMKNPIQVFVGSLDLATVH---------TVMQKVYIVDEEEKTDMMYEFF 453
Query: 117 QSDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ +P + IIF G K K + S L S G + + R
Sbjct: 454 RKMSPNDKVIIFFG----KKTKVDDVASDLALQSVNCQSIHGGREQ---------SDREQ 500
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+L +++ G +L++TD+A+RGID+ + TH+ N+D PR +Y+HR GRTGR S E
Sbjct: 501 ALEDLKTGEVQILLATDVASRGIDIEDITHVLNYDFPRDIEEYVHRVGRTGRAGRSGESI 560
Query: 236 T 236
T
Sbjct: 561 T 561
>gi|375310100|ref|ZP_09775378.1| RNA helicase yqfR [Paenibacillus sp. Aloe-11]
gi|375078053|gb|EHS56283.1| RNA helicase yqfR [Paenibacillus sp. Aloe-11]
Length = 461
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 125/266 (46%), Gaps = 28/266 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI K+ ++ +VIDEVD +F +K +L + + +RQ VF SA+
Sbjct: 130 GRVRELIAAKKLKMHNITTIVIDEVDQMFQLGG-AGDVKNILGT--AQRDRQLVFLSAT- 185
Query: 62 PQHRRFLHNCIQQ--KWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
L++ IQ K +D V + ++ + S L H + + ++ K L L++
Sbjct: 186 ------LNDEIQALAKHEMNDYVEIGIDPDQKTASGLEHYYFVTEERDKVDMLRRLVRHF 239
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
P ++FV + G + + + S G +D + +R+ L
Sbjct: 240 NPRKALVFV----NTTNAIGEIEAKLNHMGLTTASLYGDADKV---------TRSNVLAR 286
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R+ +L+++D+AARG+D+ + +FD + Y+HRAGRTGR K V S
Sbjct: 287 FREDKLKVLIASDVAARGLDIEGLEMVIHFDPATDSQAYVHRAGRTGR---MGRKGLVVS 343
Query: 240 IITSEELFVLQRYENELKFKSEELTL 265
++T E F+++++ EL E TL
Sbjct: 344 VVTERETFIMRKFSRELDINITERTL 369
>gi|424887777|ref|ZP_18311380.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393173326|gb|EJC73370.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 505
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 132 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P + L + Q + +V A + RFV K K L L++
Sbjct: 187 TMPPEIQKLADRFLQNPERIEVAKPASAA-----KTVTQRFVASHSKDYEKRAVLRELVR 241
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ IIF + + + D + + V L +M+ SR +
Sbjct: 242 AQTELKNAIIFCNRKKD-------------VADLFRSLERHGFSVGALHGDMDQRSRTMT 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S +T
Sbjct: 289 LQSFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFT 348
Query: 237 VTS 239
+ +
Sbjct: 349 LVT 351
>gi|372267992|ref|ZP_09504040.1| ATP-dependent RNA helicase RhlB [Alteromonas sp. S89]
Length = 506
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 124/259 (47%), Gaps = 24/259 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + K L+ ++LVIDE D + + + +++++ +RQT+F SA+
Sbjct: 224 GRLLDFVNKRDCYLDQTEILVIDEADRMLDMGF-IPDVRRIVRQTPRKTHRQTMFFSATF 282
Query: 62 -PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P+ + + ++Q T+ +V + + + H +++ G + KY L +++Q D
Sbjct: 283 TPE----VDDLVEQWTTEPTIVEIEPERVA-TDTVTQHVYLVSGDE-KYPLLYNIVQQDD 336
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
+S I+F + + + L +++ K LL E+ N R +L +
Sbjct: 337 VDSLIVFANRRDQCRR---------LHDHLIAHGIKAG----LLSGEVAQNKRVRTLEDF 383
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G +LV+TD+A RGI + +H+ N+ LP DY+HR GRTGR + +K T S
Sbjct: 384 KTGKSKVLVATDVAGRGIHIDGISHVVNYTLPEEPEDYVHRIGRTGR---AGKKGTSISF 440
Query: 241 ITSEELFVLQRYENELKFK 259
++ L+ E L K
Sbjct: 441 ACEDDAMRLEPIETLLGNK 459
>gi|422821668|ref|ZP_16869861.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353]
gi|422846217|ref|ZP_16892900.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72]
gi|324990619|gb|EGC22555.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353]
gi|325688268|gb|EGD30287.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72]
Length = 523
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNQIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 237 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|222148785|ref|YP_002549742.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
gi|221735771|gb|ACM36734.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
Length = 516
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 120/259 (46%), Gaps = 28/259 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 124 GRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 178
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P + L + Q + +V A + R V C K K TL +I+
Sbjct: 179 TMPPEIQKLADKFLQNPERIEVAPPSSTA-----KTVTQRLVACQNKDYEKRSTLRDIIR 233
Query: 118 S-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ D ++ IIF + + + D + + V L +M+ SR
Sbjct: 234 AQDDLKNAIIFCNRKKD-------------VADLFRSLERHGFSVGALHGDMDQRSRTNM 280
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + LLV++D+AARG+D+P+ +H++NFD+P A DY+HR GRTGR S +T
Sbjct: 281 LAGFKDNQITLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGRAFT 340
Query: 237 VTSIITSEELFVLQRYENE 255
+ + ++ L +++ E
Sbjct: 341 LVTKSDAKYLDAIEKLIGE 359
>gi|114704563|ref|ZP_01437471.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
C-terminal:ATP/GTP-binding site motif A (P-loop)
[Fulvimarina pelagi HTCC2506]
gi|114539348|gb|EAU42468.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
C-terminal:ATP/GTP-binding site motif A (P-loop)
[Fulvimarina pelagi HTCC2506]
Length = 508
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 115/250 (46%), Gaps = 42/250 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KLL RQT+F SA
Sbjct: 132 GRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLLPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCL--HHRFVICGKKM--KYQ 110
++P ++FL N V V KP + L R V G K K
Sbjct: 187 TMPPEITKLTQQFLQNP------------VRVEVAKPASAALTVEQRLVASGAKDYDKRA 234
Query: 111 TLLSLIQSDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMN 169
L L++++ + IIF + + S TL + + + L +M+
Sbjct: 235 RLRDLLRANEDVTNAIIFCNRKRDVS---------TLFRSLEKHGFSAGA----LHGDMD 281
Query: 170 FNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKP 229
+R L R+ LLV++D+AARG+D+P +H++NFD+P A DY+HR GRTGR
Sbjct: 282 QRARMTMLHNFREDKLQLLVASDVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAG 341
Query: 230 FSDEKWTVTS 239
S + +T+ +
Sbjct: 342 RSGKAFTLVT 351
>gi|374710226|ref|ZP_09714660.1| hypothetical protein SinuC_08385 [Sporolactobacillus inulinus CASD]
Length = 480
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I++ +L+ ++V+V+DE D + N + + +L + + NRQT+ SA++
Sbjct: 128 GRLLDHIKRRTIRLDQIKVVVLDEADEMLNMGF-IEDIHAILEA--TPENRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + L + K + + A S + +V + K+ L + +P
Sbjct: 185 PRPIQVLAEKFMHEPKK-----IQIKAKTLTTSLIDQSYVKVRELEKFDALTRFLDIQSP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L+ Y+ + ++ + R L +
Sbjct: 240 ERAIVF-GRTKRRVDE--------LMRALQKRGYEAEG----IHGDLTQSKRDLVLRRFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
Q LLV+TD+AARG+D+ TH+YNFDLP+ Y+HR GRTGR
Sbjct: 287 QNEVKLLVATDVAARGLDISNVTHVYNFDLPQDPESYVHRIGRTGR 332
>gi|422879322|ref|ZP_16925788.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059]
gi|422929168|ref|ZP_16962110.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis ATCC
29667]
gi|422932139|ref|ZP_16965070.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK340]
gi|332366034|gb|EGJ43790.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059]
gi|339615357|gb|EGQ20036.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis ATCC
29667]
gi|339618923|gb|EGQ23513.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK340]
Length = 523
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNQIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 237 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|156740947|ref|YP_001431076.1| DEAD/DEAH box helicase [Roseiflexus castenholzii DSM 13941]
gi|156232275|gb|ABU57058.1| DEAD/DEAH box helicase domain protein [Roseiflexus castenholzii DSM
13941]
Length = 450
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 120/244 (49%), Gaps = 34/244 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +E+ L+ ++VL +DE D +F+ + ++++L + RQT+ SA++
Sbjct: 129 GRLLDHLERGTLTLDHLEVLTLDEADQMFDMGF-LPDVRRIL--RLAPVERQTMLFSATM 185
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P R L + + + +S V +AI P+P L K L+ L+
Sbjct: 186 PDAVRSLAREALRDPLTVQIGRSAPVATVTHAIYPVPEHL-----------KTSLLIELL 234
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSN-SYKGSSDVLLLEEEMNFNSRAA 175
+ ES +IF ++++ G D L+ Y+ +S L ++ N R A
Sbjct: 235 ERTDAESVLIFT-RTKHRAQRLG---------DTLARLGYRATS----LHGNLSQNRRQA 280
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+L R G +L +TDIAARGID+ +H+ N+D+P++A Y HR GRTGR + + +
Sbjct: 281 ALDGFRSGRYQILTATDIAARGIDVARISHVINYDMPQTAEAYTHRIGRTGRAARTGDAF 340
Query: 236 TVTS 239
T+ +
Sbjct: 341 TLVT 344
>gi|422876910|ref|ZP_16923380.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056]
gi|332361718|gb|EGJ39522.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056]
Length = 523
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNQIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 237 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|422852083|ref|ZP_16898753.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150]
gi|325694070|gb|EGD35988.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150]
Length = 523
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNQIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 237 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|138893877|ref|YP_001124330.1| DEAD/DEAH box helicase [Geobacillus thermodenitrificans NG80-2]
gi|134265390|gb|ABO65585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
thermodenitrificans NG80-2]
Length = 467
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 124/262 (47%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +LE V+ +V+DE D + N + ++ +L + RQT+ SA++
Sbjct: 129 GRIIDHINRGTLRLEHVRTVVLDEADEMLNMG-FIEDIEAILRHVPT--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R I +++ +D V V A + + ++ +K K+ L L+ AP
Sbjct: 186 PDPIR----RIAERFM-NDPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G +++ R + L + +
Sbjct: 241 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLSQAKRLSVLRKFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + +
Sbjct: 288 EGSIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKTGVAMTFV 344
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E+ L E K K E +
Sbjct: 345 TPREIGQLHHIERTTKRKMERM 366
>gi|401682240|ref|ZP_10814134.1| DEAD/DEAH box helicase [Streptococcus sp. AS14]
gi|400184676|gb|EJO18914.1| DEAD/DEAH box helicase [Streptococcus sp. AS14]
Length = 523
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNQIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 237 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|262369669|ref|ZP_06062997.1| superfamily II DNA and RNA helicase [Acinetobacter johnsonii SH046]
gi|381196601|ref|ZP_09903943.1| ATP-dependent RNA helicase RhlB [Acinetobacter lwoffii WJ10621]
gi|262315737|gb|EEY96776.1| superfamily II DNA and RNA helicase [Acinetobacter johnsonii SH046]
Length = 383
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 124/270 (45%), Gaps = 26/270 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +E+ L+ ++ LVIDE D L + + S+K+++ RQT+ SA+
Sbjct: 138 GRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGF-IPSVKRIVRFSPRKEQRQTLMFSAT- 195
Query: 62 PQHRRFLHNCIQ--QKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
F ++ + Q+W + V V + K + + R + K KY+ L +++ +
Sbjct: 196 -----FSYDVLNLAQQWL-FEPVTVEIEPEKKTNADVEQRVYMVAKSDKYKLLQDILRDE 249
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E +IF + + K N + YK V++L E+ + R L +
Sbjct: 250 PIEKVMIFANRRDQVRKLYDN---------LKRDGYK----VVMLSGEIAQDKRLKMLDQ 296
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G ++++TD+A RGI + +H+ NF LP + DY+HR GRTGR + + S
Sbjct: 297 FKNGQHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGR---AGTRGVSIS 353
Query: 240 IITSEELFVLQRYENELKFKSEELTLQTQC 269
++ ++ F L E + K L+ C
Sbjct: 354 FLSEDDAFYLPEIEKAIGQKLPLTRLEGYC 383
>gi|422860597|ref|ZP_16907241.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330]
gi|327468980|gb|EGF14452.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330]
Length = 523
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNQIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 237 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|422825892|ref|ZP_16874071.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678]
gi|324995328|gb|EGC27240.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678]
Length = 523
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNQIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 237 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|218674642|ref|ZP_03524311.1| DEAD/DEAH box helicase domain protein [Rhizobium etli GR56]
Length = 420
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 114/245 (46%), Gaps = 32/245 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSC--LHHRFVICGKK--MKYQTLLSL 115
++P + L + Q + +V KP + + RFV K K L L
Sbjct: 187 TMPPEIQKLADRFLQNPERIEVA-------KPASAAKTVTQRFVASHSKDYEKRAVLREL 239
Query: 116 IQSDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
+++ ++ IIF + + + D + + V L +M+ SR
Sbjct: 240 VRAQGELKNAIIFCNRKKD-------------VADLFRSLERHGFSVGALHGDMDQRSRT 286
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEK 234
L R G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S
Sbjct: 287 MMLQSFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAA 346
Query: 235 WTVTS 239
+T+ +
Sbjct: 347 FTLVT 351
>gi|15896262|ref|NP_349611.1| ATP-dependent RNA [Clostridium acetobutylicum ATCC 824]
gi|337738217|ref|YP_004637664.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
gi|384459728|ref|YP_005672148.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
acetobutylicum EA 2018]
gi|15026068|gb|AAK80951.1|AE007798_3 ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis
ortholog [Clostridium acetobutylicum ATCC 824]
gi|325510417|gb|ADZ22053.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
acetobutylicum EA 2018]
gi|336293434|gb|AEI34568.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
Length = 528
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 129/254 (50%), Gaps = 27/254 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I++ KL+ V+ LV+DE D + + + ++ ++ + S +RQT+ SA++
Sbjct: 133 GRIMDHIKRKTVKLDKVKFLVLDEADEMLDMG-FIDDIEGIIKNISG--DRQTMLFSATM 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L + + K +V H+ + + + K K++ L +I + P
Sbjct: 190 PAPIKKLAS----NYMKKEVKHIAIIKNSLTVERIQQFYFEVKNKDKFEALCRIIDVEEP 245
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS--YKGSSDVLLLEEEMNFNSRAASLLE 179
E+ IIF ++K+ VD L S ++G + V + +M+ N R +L +
Sbjct: 246 ETTIIFC-----RTKRG---------VDELVESMQFRGYN-VEGMHGDMSQNQRINTLKK 290
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++ LV+TD+AARGID+ +H+ N+D+P+ Y+HR GRTGR ++ + S
Sbjct: 291 FKENNIDFLVATDVAARGIDVHNVSHVINYDIPQDMESYVHRIGRTGR---ANAEGIAYS 347
Query: 240 IITSEELFVLQRYE 253
++T E ++++ E
Sbjct: 348 LVTPREYVMIKQIE 361
>gi|422855974|ref|ZP_16902632.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1]
gi|327461635|gb|EGF07966.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1]
Length = 523
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNQIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 237 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|422853805|ref|ZP_16900469.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160]
gi|422863055|ref|ZP_16909687.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408]
gi|422883664|ref|ZP_16930113.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49]
gi|325697116|gb|EGD39003.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160]
gi|327473355|gb|EGF18775.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408]
gi|332362751|gb|EGJ40547.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49]
Length = 523
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNQIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 237 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|323352691|ref|ZP_08087661.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
gi|322121727|gb|EFX93473.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
Length = 523
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNQIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 237 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|269987038|gb|EEZ93313.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 435
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 125/258 (48%), Gaps = 25/258 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+++ +S++ LV+DEVD + + + +K +L+ RQT+F SA+I
Sbjct: 126 GRLIDLMKRRELNTDSIRFLVLDEVDIMLDMG-FIDDIKYILSKLPK--KRQTMFFSATI 182
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + I +T ++ ++V+++A + + + H + I K+ TLL+ + P
Sbjct: 183 PEEIKH----ITLNYT-NNPINVNIDAGEVTVNTIQHFYSIASGSDKFATLLAYLNEKKP 237
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E IIF Q K + + N +L+ ++ N R SL +
Sbjct: 238 EKAIIFCKTQRNAEK----------IHSIMQNM---GMQAVLMHGGLSQNRREHSLNMFK 284
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +L++T++AARG+D+ + I NFD Y+HR GR+ R S + +T I
Sbjct: 285 EGVN-MLIATNVAARGLDIDNVSDIINFDAETDPKAYVHRVGRSARMGKSGKAFT---IF 340
Query: 242 TSEELFVLQRYENELKFK 259
T E +++ EN K K
Sbjct: 341 THGEKYLVYEIENYAKVK 358
>gi|146300600|ref|YP_001195191.1| DEAD/DEAH box helicase [Flavobacterium johnsoniae UW101]
gi|146155018|gb|ABQ05872.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
UW101]
Length = 444
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 123/256 (48%), Gaps = 26/256 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI++ L+ Q LV+DE D + + K+ SL ++L +T+ SA++
Sbjct: 132 GRLIDLIQRKAVDLKQTQYLVLDEADEMVSILKE--SLDEILTEIPK--KHRTLLFSATL 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L Q + +VV V + + H++++ K L+ + S
Sbjct: 188 PGTIKQL----VQNYLNKNVVQVSASMEVVGNQGIDHQYIVVDPIEKLDVLMHFLNSREG 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
E GIIF K+K A N + L ++ F S + GS + R + +
Sbjct: 244 ERGIIFC-----KTKAAVNKLAKNLAINRFSSGAIHGS---------LTQGIRDRIMEQF 289
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R+G +LV+TD+AARGID+ E +++ N+ LP + Y+HR+GRT R + TV
Sbjct: 290 REGHINILVATDLAARGIDVKEISYVVNYHLPDAYETYVHRSGRTARAGANGLSLTV--- 346
Query: 241 ITSEELFVLQRYENEL 256
+ EE+F + +E EL
Sbjct: 347 LQEEEVFEIADFEREL 362
>gi|422849128|ref|ZP_16895804.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115]
gi|325690149|gb|EGD32153.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115]
Length = 523
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNRIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 237 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|288904866|ref|YP_003430088.1| ATP-dependent RNA helicase [Streptococcus gallolyticus UCN34]
gi|288731592|emb|CBI13147.1| putative ATP-dependent RNA helicase [Streptococcus gallolyticus
UCN34]
Length = 526
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 111/227 (48%), Gaps = 23/227 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ V+ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDHVETLILDEADEMLN----MGFLEDIEAIISRVPETRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P+ + + Q HV V A + + ++ ++ K+ T+ L+ D
Sbjct: 184 MPEAIKRIGVKFMQNPE-----HVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVDQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F ++K+ + + L + Y+ + +++ R L +
Sbjct: 239 PELSIVF-----GRTKRRVDELTRGLKL----RGYRAEG----IHGDLDQGKRLRVLRDF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 286 KNDNIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 332
>gi|340356606|ref|ZP_08679248.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
gi|339620533|gb|EGQ25102.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
Length = 526
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 122/256 (47%), Gaps = 24/256 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL++VQ LV+DE D + N + + +LAS + RQT+ SA++
Sbjct: 154 GRILDHINRKTLKLDNVQTLVLDEADEMLNMGF-IEDINTILASVPA--ERQTLLFSATM 210
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R I + + K+ + V + + + + FV ++ K+ L L+ P
Sbjct: 211 PAPIR----KIAETFMKNPEI-VKIKSKEMTVENIEQFFVKAHEREKFDVLSRLLNVHQP 265
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + +A S + +L+ G ++ R + L + +
Sbjct: 266 ELAIVF-GRTKRRVDELAHALS---IRGYLAEGIHG---------DLTQAKRMSVLRQFK 312
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + +
Sbjct: 313 DNKIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKSGMAITFV 369
Query: 242 TSEELFVLQRYENELK 257
T E+ L+ E K
Sbjct: 370 TPREMGYLRIVEETTK 385
>gi|335030730|ref|ZP_08524212.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus anginosus
SK52 = DSM 20563]
gi|333771191|gb|EGL48148.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus anginosus
SK52 = DSM 20563]
Length = 565
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 32/253 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL V+ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 175 GRLLDLIKRKALKLNHVETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 230
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 231 MP-------DAIKRIGVKFMKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 283
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 284 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 329
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 330 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 388
Query: 238 TSIITSEELFVLQ 250
+ E+ LQ
Sbjct: 389 --FVAPNEMGYLQ 399
>gi|403386448|ref|ZP_10928505.1| DEAD/DEAH box helicase [Clostridium sp. JC122]
Length = 422
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 123/258 (47%), Gaps = 26/258 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K +V+ +V+DE D L + + + + K + ++ +RQ + SA++
Sbjct: 132 GRILELIKKRKISAHTVKTIVLDECDKLLDENN--NEVTKAVIK-TTLRDRQLLCFSATV 188
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+ +F + ++ D V + + + + H +C K+ K + L+ +
Sbjct: 189 TEEVLKFANESMK------DPVIIKEDKVPMANKNIEHMCFLCDKRDKTLMVRKLVAALK 242
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+ I+F+ N+ ++ D L Y G V + + N R S+ E
Sbjct: 243 PKKAIVFIN----------NSNDVEVITDKLK--YHGLKAVSISGGDFKSN-RKKSMDEF 289
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
G +LVS+D+ ARGID+ THI N DLP + +DYLHR+GR GR K S+
Sbjct: 290 INGKSNILVSSDLTARGIDIRGITHIINIDLPGNEMDYLHRSGRCGR---GKNKGISVSV 346
Query: 241 ITSEELFVLQRYENELKF 258
IT E ++ + EN+ K
Sbjct: 347 ITEIEKPLITKLENKFKI 364
>gi|312864570|ref|ZP_07724801.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
F0415]
gi|311099697|gb|EFQ57910.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
F0415]
Length = 521
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 115/246 (46%), Gaps = 37/246 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL V+ L++DE D + N + L+ + A S + RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHVETLILDEADEMLN----MGFLEDIEAIISHVPDERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ ++ K+ T+ LI
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTSDNVEQFYIRVKEREKFDTMTRLIDI 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS-----YKGSSDVLLLEEEMNFNSR 173
+ PE I+F T VD L+ Y+ + +++ N R
Sbjct: 237 EQPELSIVF--------------GRTKRRVDELTRGLKLRGYRAEG----IHGDLDQNKR 278
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ + + +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S +
Sbjct: 279 LRVIRDFKNDNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGK 338
Query: 234 KWTVTS 239
T S
Sbjct: 339 SVTFVS 344
>gi|408419252|ref|YP_006760666.1| ATP-dependent RNA helicase RhlE [Desulfobacula toluolica Tol2]
gi|405106465|emb|CCK79962.1| RhlE: predicted ATP-dependent RNA helicase [Desulfobacula toluolica
Tol2]
Length = 422
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 117/227 (51%), Gaps = 24/227 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ F L++V+ LV+DE D +F+ + +++++ + RQ++ SA++
Sbjct: 129 GRLLDLLNDRAFSLKAVEALVLDEADHMFDKG-FLPDIRRIIKQLPT--KRQSLVFSATM 185
Query: 62 PQHRRFL-HNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P+ R L N + T V +N +P+ + H F + K+ K L ++IQ +
Sbjct: 186 PKEIRHLAENILINPAT------VQINHTQPVLAISHVLFQVA-KEQKTSLLKTIIQKEE 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
+S ++F ++ A S L++ YK +S ++ ++ R +L
Sbjct: 239 MKSTLVF-------TRTKHKAKSLALILQ--KAGYKAAS----IQGNLSQVKRQEALNGF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ G +LV+TDIAARGID+ +H+ N+D+P +A Y HR GRTGR
Sbjct: 286 KNGTFKILVATDIAARGIDVKGISHVINYDVPDTAETYTHRTGRTGR 332
>gi|396925106|gb|AFN89211.1| vasa [Solea senegalensis]
Length = 648
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L ++ LV+DE D + + + +++L+ S + NRQT+ SA
Sbjct: 347 GRLMDMIGRGKVGLSKLRYLVLDEADRMLDMGFE-PEMRRLVGSPGMPAKENRQTLMFSA 405
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + K D + + V + S + F+ GK K + LL ++++
Sbjct: 406 TFPEDIQRLA----ADFLKVDYLFLAVGVVGGACSDVQQTFIEVGKFNKREQLLDILKTT 461
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
+ I+FV EK + A + FL ++ + E+ R +L +
Sbjct: 462 GMDRTIVFV----EKKRYA------DFIATFLCQEKLPTTSIHGDREQYQ---REQALAD 508
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P+ ++ NFDLP + +Y+HR GRTGR
Sbjct: 509 FRSGKCPVLVATSVAARGLDIPDVQNVVNFDLPNNIDEYVHRIGRTGR 556
>gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
Length = 523
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 124/261 (47%), Gaps = 30/261 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I +H KL+ VQ+LV+DE D + N + + K L RQT+ SA
Sbjct: 128 GRLLDHIRRHTLKLDHVQMLVLDEADEMLNMGFLDDIEDIIKQLPE-----ERQTMLFSA 182
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSLIQS 118
++P + + ++ K D HV + A K L + L +F + + K+ +
Sbjct: 183 TMPPEIK----RVGVQFMK-DPKHVKIKA-KELTTDLIDQFYVRSRDFEKFDVMTRFFDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+P+ I+F ++K+ + ++ L + Y + + ++ R +
Sbjct: 237 QSPDLTIVFT-----RTKRRVDEIASGLE----ARGYNAAG----IHGDLTQKRRTQIMN 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ R G +LV+TD+AARGID+ + TH+YN+D+P+ Y+HR GRTGR + +
Sbjct: 284 DFRHGKLDILVATDVAARGIDINDVTHVYNYDIPQDPDSYVHRVGRTGR---AGKHGVSM 340
Query: 239 SIITSEELFVLQRYENELKFK 259
+ +T E+ L+ E K +
Sbjct: 341 TFVTPNEMDYLREIEKLTKVR 361
>gi|396925120|gb|AFN89218.1| vasa, partial [Solea senegalensis]
Length = 335
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L ++ LV+DE D + + + +++L+ S + NRQT+ SA
Sbjct: 34 GRLMDMIGRGKVGLSKLRYLVLDEADRMLDMGFE-PEMRRLVGSPGMPAKENRQTLMFSA 92
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + K D + + V + S + F+ GK K + LL ++++
Sbjct: 93 TFPEDIQRLA----ADFLKVDYLFLAVGVVGGACSDVQQTFIEVGKFNKREQLLDILKTT 148
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
+ I+FV EK + A + FL ++ + E+ R +L +
Sbjct: 149 GMDRTIVFV----EKKRYA------DFIATFLCQEKLPTTSIHGDREQYQ---REQALAD 195
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P+ ++ NFDLP + +Y+HR GRTGR
Sbjct: 196 FRSGKCPVLVATSVAARGLDIPDVQNVVNFDLPNNIDEYVHRIGRTGR 243
>gi|395534454|ref|XP_003769256.1| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Sarcophilus
harrisii]
Length = 733
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 127/263 (48%), Gaps = 31/263 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L L S+ LV+DE D + + + +K LL +RQT+ SA+
Sbjct: 459 GRLNDLQMNEFINLNSITYLVLDEADKMLDMGFEPQIMKILLDVRP---DRQTIMTSATW 515
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIK-PLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P R L QK+ +D + V+V + + + + +I ++ K + S I +
Sbjct: 516 PDAVRRL----SQKYL-NDPMIVYVGTLDLAAVNTVRQKIIITTEQEKPALIHSFIDAMK 570
Query: 121 PESG-IIFVGEQSEKSKKAGNAPSTTLLVDFLSN--SYKGSSDVLLLEEEMNFNSRAASL 177
PE IIFVG + L+ D +S+ S KG V L + R +L
Sbjct: 571 PEDKVIIFVGRK--------------LIADDISSDLSIKGLP-VQSLHGNREQSDRERAL 615
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
E + G +L++TD+A+RG+D+ + TH++NFD PR+ +Y+HR GRTGR + E T+
Sbjct: 616 NEFKTGIVRILIATDLASRGLDVLDITHVFNFDFPRNLEEYVHRVGRTGRAGHTGESITL 675
Query: 238 TS----IITSEELFVLQRYENEL 256
+ I E + +L+R E+
Sbjct: 676 LTRNDWKIAGELINILERANQEI 698
>gi|227550862|ref|ZP_03980911.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
TX1330]
gi|257887886|ref|ZP_05667539.1| helicase [Enterococcus faecium 1,141,733]
gi|257893315|ref|ZP_05672968.1| helicase [Enterococcus faecium 1,231,408]
gi|293379275|ref|ZP_06625421.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
gi|431036552|ref|ZP_19492322.1| DEAD/DEAH box helicase [Enterococcus faecium E1590]
gi|431752972|ref|ZP_19541651.1| DEAD/DEAH box helicase [Enterococcus faecium E2620]
gi|431763081|ref|ZP_19551634.1| DEAD/DEAH box helicase [Enterococcus faecium E3548]
gi|227179960|gb|EEI60932.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
TX1330]
gi|257823940|gb|EEV50872.1| helicase [Enterococcus faecium 1,141,733]
gi|257829694|gb|EEV56301.1| helicase [Enterococcus faecium 1,231,408]
gi|292642071|gb|EFF60235.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
gi|430563092|gb|ELB02323.1| DEAD/DEAH box helicase [Enterococcus faecium E1590]
gi|430612933|gb|ELB49957.1| DEAD/DEAH box helicase [Enterococcus faecium E2620]
gi|430622775|gb|ELB59485.1| DEAD/DEAH box helicase [Enterococcus faecium E3548]
Length = 503
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 118/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL +VQ LV+DE D + N + ++K+++ + RQT+ SA++
Sbjct: 128 GRMLDHINRHTLKLGTVQTLVLDEADEMLNMG-FLEDIEKIISQVP--DQRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ KS HV + A + + +V + K+ + L P
Sbjct: 185 PPAIK----NIGVKFMKSPH-HVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + Y+ + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYRAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 SGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMDYLHVIEN 356
>gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
Length = 467
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 125/266 (46%), Gaps = 24/266 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +LE V+ +V+DE D + N + ++ +L + RQT+ SA++
Sbjct: 129 GRIIDHINRGTLRLEHVRTVVLDEADEMLNMG-FIEDIEAILRHVPT--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R I +++ +D V V A + + ++ +K K+ L L+ AP
Sbjct: 186 PDPIR----RIAERFM-NDPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G +++ R + L + +
Sbjct: 241 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLSQAKRLSVLRKFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + +
Sbjct: 288 EGSIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKTGVAMTFV 344
Query: 242 TSEELFVLQRYENELKFKSEELTLQT 267
T E+ L E K K E + T
Sbjct: 345 TPREIGQLHHIERTTKRKMERMKPPT 370
>gi|381169049|ref|ZP_09878224.1| Putative ATP-dependent RNA helicase [Phaeospirillum molischianum
DSM 120]
gi|380681838|emb|CCG43046.1| Putative ATP-dependent RNA helicase [Phaeospirillum molischianum
DSM 120]
Length = 536
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 112/241 (46%), Gaps = 29/241 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L + E+ L V+VLVIDE D + + V + LL RQT+F SA
Sbjct: 131 GRLLDMFERGRILLNDVKVLVIDEADRMLDMGFIPDVERIVGLLPKI-----RQTLFFSA 185
Query: 60 SI-PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
++ P+ RR + + V+ + + + + K +TL LI++
Sbjct: 186 TLGPEIRRLADAFLMNPK------EITVSPGTSTAATVEQHLAVVEEIDKRETLRHLIRT 239
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASL 177
+ ++ IF + + VD L S K DV L +M ++R +L
Sbjct: 240 ENVKNAFIFCNRKRD--------------VDILYRSLKKHDFDVCQLHGDMAQSARGDTL 285
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
++G L+V +D+AARGID+ +H++NFD+P A DY+HR GRTGR + +T+
Sbjct: 286 ESFKKGEIRLMVCSDVAARGIDVSAVSHVFNFDVPIHAEDYVHRIGRTGRAGMAGRAFTI 345
Query: 238 T 238
Sbjct: 346 A 346
>gi|387792078|ref|YP_006257143.1| DNA/RNA helicase [Solitalea canadensis DSM 3403]
gi|379654911|gb|AFD07967.1| DNA/RNA helicase, superfamily II [Solitalea canadensis DSM 3403]
Length = 440
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 112/235 (47%), Gaps = 21/235 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ + L VQ V+DE D + + V+ +K+++A RQT+F SA++
Sbjct: 134 GRLLDLMNQKFIHLHKVQFFVLDEADRMLDMGF-VNDVKRVIAKLPE--KRQTLFFSATM 190
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L + I K K +V V A ++ + K K L L+++D
Sbjct: 191 PPVIQQLADSILSKPVKVEVTPVSSTA-----ETINQSVYMVDKGNKRALLTHLLENDGI 245
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
S ++F K+K + + L N +K ++ + ++ N RA S + +
Sbjct: 246 GSALVFT-----KTKHGADRIARDL------NKHKIKAEAIHGDKSQNARQRALSNFKSK 294
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+LV+TDIAARGID+ + H+ NFD+P A Y+HR GRTGR S T
Sbjct: 295 DI--RILVATDIAARGIDIDDLLHVINFDIPYEAETYVHRIGRTGRAGASGTALT 347
>gi|229087937|ref|ZP_04220048.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44]
gi|228695405|gb|EEL48279.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44]
Length = 481
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 115/252 (45%), Gaps = 29/252 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + IEK F LE ++ LVIDE D + N QV ++ L + NR T+ SA
Sbjct: 131 GRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPT-----NRMTMLFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P+ L + +++ + A + HR + ++ K+ L + +
Sbjct: 186 TLPEDVENLSRTYMESP-----INIEITASGITTDKIEHRILEVREEEKFSLLKDITTVE 240
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLL 178
+P+S IIF Q VD + K SS L M R A +
Sbjct: 241 SPDSCIIFCRTQEN--------------VDHVFRQLKRSSYPCDKLHGGMIQEDRFAVMN 286
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ ++G LV+TD+AARGID+ TH+ N+D+P Y+HR GRTGR S + +T
Sbjct: 287 DFKRGKFRYLVATDVAARGIDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGK--AIT 344
Query: 239 SIITSEELFVLQ 250
I EE F+ +
Sbjct: 345 FITPYEERFLAE 356
>gi|262283179|ref|ZP_06060946.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
gi|262261431|gb|EEY80130.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
Length = 523
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 118/257 (45%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNQIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASL 177
+ PE I+F T VD L+ K + +++ R L
Sbjct: 237 EQPELSIVF--------------GRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|396925108|gb|AFN89212.1| vasa [Solea senegalensis]
Length = 639
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L ++ LV+DE D + + + +++L+ S + NRQT+ SA
Sbjct: 338 GRLMDMIGRGKVGLSKLRYLVLDEADRMLDMGFE-PEMRRLVGSPGMPAKENRQTLMFSA 396
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + K D + + V + S + F+ GK K + LL ++++
Sbjct: 397 TFPEDIQRLA----ADFLKVDYLFLAVGVVGGACSDVQQTFIEVGKFNKREQLLDILKTT 452
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
+ I+FV EK + A + FL ++ + E+ R +L +
Sbjct: 453 GMDRTIVFV----EKKRYA------DFIATFLCQEKLPTTSIHGDREQYQ---REQALAD 499
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P+ ++ NFDLP + +Y+HR GRTGR
Sbjct: 500 FRSGKCPVLVATSVAARGLDIPDVQNVVNFDLPNNIDEYVHRIGRTGR 547
>gi|218462794|ref|ZP_03502885.1| ATP dependent RNA helicase protein [Rhizobium etli Kim 5]
Length = 398
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 186
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK--MKYQTLLSLIQ 117
++P + L + Q + +V A + RFV K K L L++
Sbjct: 187 TMPPEIQKLADRFLQNPERIEVAKPASAA-----KTVTQRFVASHSKDYEKRAVLRELVR 241
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ IIF + + + D + + V L +M+ SR
Sbjct: 242 AQTELKNAIIFCNRKKD-------------VADLFRSLERHGFSVGALHGDMDQRSRTMM 288
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S +T
Sbjct: 289 LQSFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFT 348
Query: 237 VTS 239
+ +
Sbjct: 349 LVT 351
>gi|336063871|ref|YP_004558730.1| ATP-dependent RNA helicase [Streptococcus pasteurianus ATCC 43144]
gi|334282071|dbj|BAK29644.1| ATP-dependent RNA helicase [Streptococcus pasteurianus ATCC 43144]
Length = 526
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 111/227 (48%), Gaps = 23/227 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ V+ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDHVETLILDEADEMLN----MGFLEDIEAIISRVPETRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P+ + + Q HV V A + + ++ ++ K+ T+ L+ D
Sbjct: 184 MPEAIKRIGVKFMQNPE-----HVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVDQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F ++K+ + + L + Y+ + +++ R L +
Sbjct: 239 PELSIVF-----GRTKRRVDELTRGLKL----RGYRAEG----IHGDLDQGKRLRVLRDF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 286 KNDNIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 332
>gi|425055862|ref|ZP_18459326.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 505]
gi|403033019|gb|EJY44552.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 505]
Length = 503
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 118/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL +VQ LV+DE D + N + ++K+++ + RQT+ SA++
Sbjct: 128 GRMLDHINRHTLKLGTVQTLVLDEADEMLNMG-FLEDIEKIISQVP--DQRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ KS HV + A + + +V + K+ + L P
Sbjct: 185 PPAIK----NIGVKFMKSPH-HVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + Y+ + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYRAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 SGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMDYLHVIEN 356
>gi|395789890|ref|ZP_10469398.1| hypothetical protein ME9_01115 [Bartonella taylorii 8TBB]
gi|395428112|gb|EJF94194.1| hypothetical protein ME9_01115 [Bartonella taylorii 8TBB]
Length = 467
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 129/272 (47%), Gaps = 46/272 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL + RQT+F SA
Sbjct: 136 GRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKL-----TPFTRQTLFFSA 190
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++ ++FLH+ + + TK+ + + R V G K K L
Sbjct: 191 TMAPEITKLTKQFLHSPVSVEVTKASST----------ATTITQRLVKSGNKAWDKRAVL 240
Query: 113 LSLIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LI ++ E + IIF + + S+ L + + + V L +M+
Sbjct: 241 RELIHNEGNELKNAIIFCNRKRDISE---------LFRSLVRHHFS----VGALHGDMDQ 287
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
SR +L + + LLV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 288 YSRTNTLADFKNNKLTLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANR 347
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSEE 262
S + +T I+T ++ Q+Y N ++ S E
Sbjct: 348 SGKAFT---IVTKDD----QKYINAIEEMSNE 372
>gi|373858038|ref|ZP_09600777.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372452260|gb|EHP25732.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 485
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 131/264 (49%), Gaps = 24/264 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I++ +L+++ +V+DE D + N + ++K+L+ S RQT+ SA++
Sbjct: 129 GRLMDHIDRKTIRLQNIHTVVLDEADEMLNMGF-IEDIEKILSGIPS--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P HR + +K+ K+ + V V A + + ++ +K K+ L SL+ +P
Sbjct: 186 P-HR---IKTLAEKFMKNPEL-VKVQAKEMTVGNIEQHYLEVQEKQKFDVLCSLLDIQSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F ++KK + L+ + Y + ++ R + +
Sbjct: 241 ELAIVF-----GRTKKRVDE----LVEGLIKRGYSAEG----IHGDIPQTKRDQVIRRFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+ ++V+TD+AARG+D+ +H+YNFD+P+ Y+HR GRTGR + K + +
Sbjct: 288 EQTIDIMVATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTGR---AGNKGLAVTFV 344
Query: 242 TSEELFVLQRYENELKFKSEELTL 265
+ E+ L+ EN K K +++ +
Sbjct: 345 SPREIDHLRVIENLTKRKIDKMQV 368
>gi|125717559|ref|YP_001034692.1| RNA helicase [Streptococcus sanguinis SK36]
gi|125497476|gb|ABN44142.1| RNA helicase, putative [Streptococcus sanguinis SK36]
Length = 488
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 118/257 (45%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 93 GRLLDLIKRKALKLNQIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 148
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 149 MP-------DAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 201
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASL 177
+ PE I+F T VD L+ K + +++ R L
Sbjct: 202 EQPELSIVF--------------GRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVL 247
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 248 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 306
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 307 --FVAPNEMGYLQIIEN 321
>gi|449019765|dbj|BAM83167.1| ATP-dependent RNA helicase [Cyanidioschyzon merolae strain 10D]
Length = 627
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 113/234 (48%), Gaps = 34/234 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L I++ L +V+ L +DE D + + + +++++ + + RQT+ SA
Sbjct: 316 GRLLDFIDRGRIHLANVRFLTLDEADRMLDMGFE-PQIRQIVENCDMPAAGQRQTLMFSA 374
Query: 60 SIPQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLS 114
+ P+ + FLH D + + V + + R C +K + LL
Sbjct: 375 TFPREIQRLASDFLH----------DYIFLAVGRVGSTTDFIVQRIEFCEDHLKREMLLD 424
Query: 115 LIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFL-SNSYKGSSDVLLLEEEMNFNSR 173
L+ S P ++FV +K+A +A L DFL + Y SS + + + R
Sbjct: 425 LLNS-IPGLTLVFV-----DTKRAADA-----LEDFLLRHGYAASS----IHGDRSQRER 469
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
SL R G +LV+TD+AARG+D+P H+ N++LP + DY+HR GRTGR
Sbjct: 470 EDSLAAFRSGQTPILVATDVAARGLDIPNVAHVVNYELPAAIDDYVHRIGRTGR 523
>gi|306833030|ref|ZP_07466162.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
gi|304424929|gb|EFM28063.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
Length = 526
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 111/227 (48%), Gaps = 23/227 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ V+ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDHVETLILDEADEMLN----MGFLEDIEAIISRVPETRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P+ + + Q HV V A + + ++ ++ K+ T+ L+ D
Sbjct: 184 MPEAIKRIGVKFMQNPE-----HVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVDQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F ++K+ + + L + Y+ + +++ R L +
Sbjct: 239 PELSIVF-----GRTKRRVDELTRGLKL----RGYRAEG----IHGDLDQGKRLRVLRDF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 286 KNDNIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 332
>gi|385653785|gb|AFI61840.1| vasa [Lateolabrax japonicus]
Length = 632
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 112/228 (49%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L ++ V+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 333 GRLLDMIGRGKVGLSKLRYFVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 391
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + + + K+D + + V + S + FV K K + LL L++S
Sbjct: 392 TYPEDIQRM----AADFLKTDYLFLAVGVVGGACSDVEQTFVQVTKFSKREQLLDLLKST 447
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV E ++A + +L ++ + E+ R +L +
Sbjct: 448 GMERTMVFV----ETKRQA------DFIATYLCQEKVPTTSIHGDREQ---REREQALAD 494
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 495 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGR 542
>gi|451946005|ref|YP_007466600.1| DNA/RNA helicase, superfamily II [Desulfocapsa sulfexigens DSM
10523]
gi|451905353|gb|AGF76947.1| DNA/RNA helicase, superfamily II [Desulfocapsa sulfexigens DSM
10523]
Length = 409
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 114/235 (48%), Gaps = 22/235 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ I L +V++L++DE D +F+ + ++++L+ RQT+ SA++
Sbjct: 129 GRLLDLVNTKIINLSTVEMLILDEADHMFDHGF-LPDIRRILSKVP--RQRQTLVFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R L I ++ V ++ KP S + H F ++ K L ++
Sbjct: 186 PKEIRSLAEDIL-----TNPATVQIDHTKPTAS-ISHSFYQVEQRNKTNLLQKILLQKEI 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I+F + K+K +L + +S L+ ++ R +L +
Sbjct: 240 TTAIVFT-KTKHKAK--------SLAYQLQKTGCRATS----LQGNLSQQKRQLALEGFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
G +LV+TDIAARGID+ +H+ NFD+P +A Y HR GRTGR S E +T
Sbjct: 287 SGTYNVLVATDIAARGIDVSGISHVINFDMPSTAETYTHRTGRTGRASCSGEAYT 341
>gi|350410178|ref|XP_003488972.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Bombus
impatiens]
Length = 704
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 31/241 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ + + SV LV+DE D + + + K L+ +RQTV SA+
Sbjct: 422 GRLNDLVRTEVLNVSSVSYLVLDEADRMLDMGFEPQIRKALIDVRP---DRQTVMTSATW 478
Query: 62 PQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P R ++ N IQ D+V VH + + I + K + +
Sbjct: 479 PMSVRRLAKSYMKNPIQVYVGSLDLVAVH---------TVLQKIYIIDENDKTDMMHQFL 529
Query: 117 QSDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ AP + IIF K K + S L+ +S G + R
Sbjct: 530 RDMAPNDKVIIFFA----KKAKVDDVASDLALMSVNCSSIHGGREQA---------DREQ 576
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+L E++ G +L++TD+A+RGID+ + TH+ NFD PR +Y+HR GRTGR + E
Sbjct: 577 ALEELKTGEARILLATDVASRGIDIEDITHVLNFDFPRDIEEYVHRVGRTGRAGRTGESI 636
Query: 236 T 236
T
Sbjct: 637 T 637
>gi|344201906|ref|YP_004787049.1| DEAD/DEAH box helicase [Muricauda ruestringensis DSM 13258]
gi|343953828|gb|AEM69627.1| DEAD/DEAH box helicase domain protein [Muricauda ruestringensis DSM
13258]
Length = 384
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 118/238 (49%), Gaps = 26/238 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI++ ++++ LV+DE D + + + ++KL++ N +QT+ SA++
Sbjct: 167 GRLNDLIDRRALRIDTRSTLVLDEFDRMLDMG-FIKDIQKLVSGMR--NRKQTMLFSATL 223
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
++ L IQQ + V+V + + + H + + K+ L L+ +
Sbjct: 224 DPNQEKL---IQQITGAATRVNVS-SGTRSSDNVDQHIIRVKNSENKFDVLFKLVNESSF 279
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGS---SDVLLLEEEMNFNSRAASLL 178
E ++F ++K+ VD LS K S SDV+ + N+ SRA L
Sbjct: 280 EKVLLFA-----ETKRG---------VDKLSKQLKNSGIRSDVIHGNKSQNYRSRAIELF 325
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ G +LV+TD+AARGID+ TH+ N+ LP++ Y+HR GRTGR + +T
Sbjct: 326 --KSGSTKILVATDVAARGIDIKGVTHVINYQLPQTMDSYIHRIGRTGRASATGVAYT 381
>gi|339627938|ref|YP_004719581.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|379007571|ref|YP_005257022.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
gi|339285727|gb|AEJ39838.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|361053833|gb|AEW05350.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
Length = 525
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 120/258 (46%), Gaps = 36/258 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL+ VQ++V+DE D + + + ++ +L + NRQT+ SA++
Sbjct: 133 GRVMDHIRRGTLKLDHVQMMVLDEADEMLDMGF-IEDIEFILKNVP--ENRQTLLFSATV 189
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RR+L D VHV+++ + + F + K L ++
Sbjct: 190 PDPIAKLARRYL----------KDPVHVNISPERLTVPSIEQVFYEVREFEKLDALTRIL 239
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAA 175
+ E IIF ++KK VD L+ + L ++N R
Sbjct: 240 DMEEAERTIIFC-----RTKKR---------VDELTEGLQARGYTAEALHGDLNQVQRNR 285
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+ ++GG +LV+TD+AARG+D+ TH+ N+DLP+ Y+HR GRTGR +
Sbjct: 286 VMKRFKEGGSEILVATDVAARGLDIDNVTHVINYDLPQDTESYVHRIGRTGR---AGRTG 342
Query: 236 TVTSIITSEELFVLQRYE 253
T S+I +E L++ E
Sbjct: 343 TAISLINPKEFRQLRQME 360
>gi|419706526|ref|ZP_14234046.1| Putative ATP-dependent RNA helicase [Streptococcus salivarius PS4]
gi|383283761|gb|EIC81705.1| Putative ATP-dependent RNA helicase [Streptococcus salivarius PS4]
Length = 527
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 117/256 (45%), Gaps = 30/256 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHIETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + D HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYYIRVKEQEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
D PE I+F ++ L F + G +++ N R +
Sbjct: 237 DQPELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRVIR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + E
Sbjct: 284 DFKNDQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGESGQSI 340
Query: 239 SIITSEELFVLQRYEN 254
+ + E+ L EN
Sbjct: 341 TFVAPNEMGYLSIIEN 356
>gi|422865943|ref|ZP_16912568.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058]
gi|327489488|gb|EGF21281.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058]
Length = 523
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNQIETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGIKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE I+F ++K+ + + L + F + G +++ R L
Sbjct: 237 EQPELSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|337745879|ref|YP_004640041.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|379719836|ref|YP_005311967.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|386722433|ref|YP_006188759.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|336297068|gb|AEI40171.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus KNP414]
gi|378568508|gb|AFC28818.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384089558|gb|AFH60994.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
Length = 537
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 119/251 (47%), Gaps = 36/251 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + KL+ VQ +++DE D + + + +K +L+ R T+ SA++
Sbjct: 129 GRLLDHINRKTIKLDDVQTVILDEADEMLDMGF-MDDIKSILSLVPE--ERNTMLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + + L Q++ K D HV V + + ++ ++ K++ L LI +AP
Sbjct: 186 PVNIQKL----AQQFLK-DPEHVSVIPKQVSAPLIDQAYIELHERQKFEALCRLIDMEAP 240
Query: 122 ESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
E IIF V E SE +K G A L +++ N R
Sbjct: 241 ELAIIFGRTKRRVDELSEALQKRGYAAEG-------------------LHGDLSQNQRDN 281
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+ + R G +LV+TD+AARG+D+ TH+ NFDLP+ Y+HR GRTGR + ++
Sbjct: 282 VMRKFRDGSIDVLVATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGR---AGKEG 338
Query: 236 TVTSIITSEEL 246
+ +T E+
Sbjct: 339 AAYTFVTPREI 349
>gi|325977801|ref|YP_004287517.1| DEAD/DEAH box helicase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|386337311|ref|YP_006033480.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|325177729|emb|CBZ47773.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|334279947|dbj|BAK27521.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 526
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ V+ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDHVETLILDEADEMLN----MGFLEDIEAIISRVPETRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P+ + + Q HV V A + + ++ ++ K+ T+ L+ D
Sbjct: 184 MPEAIKRIGVKFMQNPE-----HVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVDQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS-----YKGSSDVLLLEEEMNFNSRAA 175
PE I+F T VD L+ Y+ + +++ R
Sbjct: 239 PELSIVF--------------GRTKRRVDELTRGLKLRGYRAEG----IHGDLDQGKRLR 280
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + + +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 281 VLRDFKNDNIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 332
>gi|260584701|ref|ZP_05852447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
elegans ATCC 700633]
gi|260157724|gb|EEW92794.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
elegans ATCC 700633]
Length = 509
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 124/271 (45%), Gaps = 30/271 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + +L++++ LV+DE D + N + + S+ KL+ NRQT+ SA
Sbjct: 128 GRLLDHISRKTLRLDNIETLVLDEADEMLNMGFLEDIESIIKLVPE-----NRQTLLFSA 182
Query: 60 SIPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
++P +R +++ HV + + + + + FV C K+ + L+
Sbjct: 183 TMPDDIKRIGVQFMKEPE------HVRIKSSEMTATLIDQYFVKCKDFEKFDIMTRLLDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
PE I+F ++ + F + G +++ R + L
Sbjct: 237 QTPELTIVF----GRTKRRVDELARGLEMRGFRAEGIHG---------DLSQQKRMSVLR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR E +VT
Sbjct: 284 DFKNNHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRA--GQEGMSVT 341
Query: 239 SIITSEELFVLQRYENELKFKSEELTLQTQC 269
+T E+ L+ E+ + + L TQ
Sbjct: 342 -FVTPNEMDYLRVIEDLTRKRMTALRPPTQM 371
>gi|88802866|ref|ZP_01118393.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
gi|88781724|gb|EAR12902.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
Length = 447
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 123/263 (46%), Gaps = 30/263 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSS--CNNRQTVFASA 59
G L L+++ ++S+ ++DE D + V++LK+ L S R+T +A
Sbjct: 132 GRLADLVKREAIDIKSISYFILDEAD------EMVTALKEGLDSIIKEIPKARRTFLFTA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + L Q + V+ + N + H++V+ K + LL + S
Sbjct: 186 TLPGTLKQL----IQNYMAPKVIQIEANMTTLGHQGIDHQYVVVAPIEKLEVLLHFLNSK 241
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
A + GIIF K+K A N S L ++ F S + GS + R +
Sbjct: 242 AGQRGIIFC-----KTKAAVNKLSKNLAINKFSSGAIHGS---------LTQGIRDRIMG 287
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ R G +LV+TD+AARGID+ + +++ N+ LP + Y+HR+GRT R S T
Sbjct: 288 QFRDGYIDILVATDLAARGIDVKDLSYVVNYHLPDTYGAYVHRSGRTARAGASGLSLT-- 345
Query: 239 SIITSEELFVLQRYENELKFKSE 261
II EEL + +E L + E
Sbjct: 346 -IIQQEELKDISDFEKALDIRFE 367
>gi|334324021|ref|XP_003340472.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
[Monodelphis domestica]
Length = 993
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 127/263 (48%), Gaps = 31/263 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L L S+ LV+DE D + + + +K LL +RQT+ SA+
Sbjct: 719 GRLNDLQMNEFINLNSITYLVLDEADKMLDMGFEPQIMKILLDVRP---DRQTIMTSATW 775
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIK-PLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P R L QK+ +D + V+V + + + + +I ++ K + S I S
Sbjct: 776 PDAVRRL----SQKYL-NDPMIVYVGTLDLAAVNTVKQKIIITTEQEKPALIHSFIDSMK 830
Query: 121 PESG-IIFVGEQSEKSKKAGNAPSTTLLVDFLSN--SYKGSSDVLLLEEEMNFNSRAASL 177
PE IIFVG + L+ D +S+ S KG V L + R +L
Sbjct: 831 PEDKVIIFVGRK--------------LIADDISSDLSIKGLP-VQSLHGNREQSDRERAL 875
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
E + G +L++TD+A+RG+D+ + TH++NFD PR+ +Y+HR GRTGR + E T+
Sbjct: 876 NEFKTGIVRILIATDLASRGLDVLDITHVFNFDFPRNLEEYVHRVGRTGRAGHTGESITL 935
Query: 238 TS----IITSEELFVLQRYENEL 256
+ I E + +L+R E+
Sbjct: 936 LTRNDWKIAGELINILERANQEI 958
>gi|325568403|ref|ZP_08144770.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
12755]
gi|420263005|ref|ZP_14765645.1| cold-shock DEAD box protein A [Enterococcus sp. C1]
gi|325158172|gb|EGC70325.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
12755]
gi|394769969|gb|EJF49787.1| cold-shock DEAD box protein A [Enterococcus sp. C1]
Length = 508
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL +V+ LV+DE D + N + ++K+++ RQT+ SA++
Sbjct: 128 GRMLDHINRHTLKLGTVETLVLDEADEMLNMG-FLEDIEKIISQVPDV--RQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ K + HV + A + + +V K+ + L+ +P
Sbjct: 185 PPAIK----NIGVKFMK-EPEHVQIKAKEMTADLIDQYYVRSKDYEKFDVMTRLLDVQSP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + YK + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYKAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 SGQLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMSYLHVIEN 356
>gi|157961286|ref|YP_001501320.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157846286|gb|ABV86785.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 442
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 130/267 (48%), Gaps = 34/267 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI + KL++ LV+DE D + S L +LLA +QT+ SA+
Sbjct: 158 GRLIDLISSNALKLDNTTTLVLDEADRML-SLGFTEELNELLAKLPKT--KQTLLFSATF 214
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R L + + ++ V V + + + S L R + + K L LI+ +
Sbjct: 215 PEEVRELTDSLL-----NNPVEVQLQSSEE--STLVQRVITVNRNRKTALLAQLIKDNQW 267
Query: 122 ESGIIFVGEQ---SEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ +IF + + ++K NA T + F S+ +G+ R L
Sbjct: 268 QQVLIFASAKYSCNRLAQKLENAGITAEV--FHSDKGQGA--------------RNRVLE 311
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
E + G +L++TDIAARGID+ + + NF+LPRS +DY+HR GR+GR + E
Sbjct: 312 EFKSGEISVLIATDIAARGIDIEKLPIVINFELPRSPVDYMHRIGRSGR---AGEAGLAM 368
Query: 239 SIITSEEL--FVLQRYENELKFKSEEL 263
S+I+ +E F L +N+L+ + E++
Sbjct: 369 SLISHDEYQHFKLIEKKNKLRLEREQI 395
>gi|108759595|ref|YP_632093.1| RNA helicase DeaD [Myxococcus xanthus DK 1622]
gi|108463475|gb|ABF88660.1| RNA helicase DeaD [Myxococcus xanthus DK 1622]
Length = 602
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 30/226 (13%)
Query: 8 IEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQH--- 64
+ + +L+ V+V+V+DE D + + L+ +L+ + +RQT SA++P
Sbjct: 180 LRRGTLQLDDVRVVVLDEADEMLDMGF-AEDLEAILSG--TPEDRQTALFSATLPPRIAS 236
Query: 65 --RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPE 122
R LH ++ K + V + P +V+ + K TL L+ ++P
Sbjct: 237 IAERHLHEPVRVKIAREKVEQGEI------PRVRQTAYVVP-RAFKIATLGRLLDVESPT 289
Query: 123 SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEVR 181
+ IIF ++E VD L+ S G L M R + +++
Sbjct: 290 AAIIFCRTRTE--------------VDDLTVSLNGRGWRAHALHGGMTQEQRDRVIKQLK 335
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
G LLV+TD+AARG+D+P +H+ NFD+P + Y+HR GRTGR
Sbjct: 336 SQGTDLLVATDVAARGLDIPRLSHVVNFDVPNAPEAYVHRIGRTGR 381
>gi|16117825|dbj|BAB69820.1| putative ATP-dependent RNA helicase [Streptococcus sobrinus]
Length = 522
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 118/241 (48%), Gaps = 27/241 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL ++ L++DE D + N + L+ + A S + RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHIETLILDEADEMLN----MGFLEDIEAIISHVPDERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ ++ K+ T+ LI
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTSDNVEQFYIRVKEREKFDTMTRLIDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ PE I+F ++K+ + + L + Y+ + +++ N R +
Sbjct: 237 EQPELSIVF-----GRTKRRVDELTRGLKL----RGYRAEG----IHGDLDQNKRLRVIR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 284 DFKNDNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGKSVTFV 343
Query: 239 S 239
S
Sbjct: 344 S 344
>gi|188587881|ref|YP_001922673.1| putative ATP-dependent RNA helicase RhlE [Clostridium botulinum E3
str. Alaska E43]
gi|188498162|gb|ACD51298.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E3 str.
Alaska E43]
Length = 432
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI++ L +V+ V+DE D +F+ V +KK++A RQ + SA++
Sbjct: 134 GRLLDLIDQKYIDLSNVKHFVLDEADRMFDMG-MVRDVKKIVAKLPKV--RQNLLFSATM 190
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L N I + D V V V + + KK K L+ L++ ++
Sbjct: 191 PSEVKSLVNSILK-----DPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLVHLLKDESI 245
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+S ++F ++K N + + + K ++ + + N+R +L +
Sbjct: 246 KSLLVF-----SRTKYGAN--------NIVKDLAKTGTESQAIHGNKSQNARQLALSNFK 292
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+G +LV+TDIAARGID+ +H+ N+DLP Y+HR GRTGR
Sbjct: 293 EGKIRVLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRIGRTGR 338
>gi|410093986|ref|ZP_11290448.1| ATP-dependent RNA helicase SrmB [Pseudomonas viridiflava UASWS0038]
gi|409758627|gb|EKN43906.1| ATP-dependent RNA helicase SrmB [Pseudomonas viridiflava UASWS0038]
Length = 445
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNR-QTVFAS 58
G L + + L+ V+VLV+DE D + + S+ V L C R QT+ S
Sbjct: 130 GRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERL------AGECAGREQTMLFS 183
Query: 59 ASIPQH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSL 115
A+ R + ++ D H+ +N + L S H+ V+ + K Q L L
Sbjct: 184 ATTGGAGLREMIGKVLK------DPQHLQLNNVSELASGTRHQIVMADHNVHKEQVLNWL 237
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ ++ + IIF ++ + G ++ YK +L + + R A
Sbjct: 238 LTNETYQKAIIFTNTKAMADRLYGR---------LVALEYK----AFVLHGDKDQKDRKA 284
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++ ++QGG ++V+TD+AARG+D+ + NFD+PRS DY+HR GRTGR
Sbjct: 285 AIDRLKQGGAKVMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGR 336
>gi|443478559|ref|ZP_21068298.1| DEAD/DEAH box helicase domain protein [Pseudanabaena biceps PCC
7429]
gi|443016135|gb|ELS30863.1| DEAD/DEAH box helicase domain protein [Pseudanabaena biceps PCC
7429]
Length = 513
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+E+ KLE++ V+DE D + N + ++++L + S +Q+ F SA++
Sbjct: 130 GRVIDLMERGKLKLENLAWFVLDEADEMLNMGF-IQDVERILVTTPST--KQSTFFSATM 186
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSLIQSD 119
P +R + N ++ T V V P+ + + + + K + LL +++ +
Sbjct: 187 PPAVKRLVKNFLKSPVT------VKVETQDSTPTRIDQQIYLVPYHLTKEEALLPVLEYE 240
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
AP S IIFV + S+ S+ VD Y G+ ++ + R L
Sbjct: 241 APTSAIIFVRTKDSASRLTEILQSSGHSVD----EYHGN---------LSQSQRENLLRR 287
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R +V+TDIAARG+D+ TH++N D+P Y+HR GRTGR + +K +
Sbjct: 288 FRNQQVRWVVATDIAARGLDIDGLTHVFNLDIPDDPERYVHRIGRTGR---AGKKGVAIT 344
Query: 240 IITSEELFVLQRYENEL 256
+I+ +E + L++ E ++
Sbjct: 345 LISGKERYKLRQLEQQV 361
>gi|91773889|ref|YP_566581.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
6242]
gi|9581858|gb|AAF89099.1|AF199442_1 DEAD-box RNA helicase [Methanococcoides burtonii]
gi|91712904|gb|ABE52831.1| Dead box RNA helicase [Methanococcoides burtonii DSM 6242]
Length = 522
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 125/263 (47%), Gaps = 24/263 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L IE+ L V++LV+DE D + + + +++++ S +RQT+ SA++
Sbjct: 127 GRLLDHIERGTIDLGDVEILVLDEADRMLDMG-FIDDVEEIIDECPS--DRQTMMFSATV 183
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ ++L + +K +V++ K L ++ KKMK+ L+ L++S+
Sbjct: 184 SKDIQYLSSKYMNNPSKV-FAKAYVDSDK-----LKQVYIDVPKKMKFSLLVHLLKSE-- 235
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFL-SNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
+SG++ V +T VDF+ N K D + + R ++L +
Sbjct: 236 KSGLVMV------------FCNTRSNVDFVQKNLRKNDIDAIAIHGGHTQAKRKSTLSKF 283
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ LV TD+AARG+D+P +H+YNFD+P +Y+HR GRT R + V +
Sbjct: 284 HSSNAHALVCTDVAARGLDIPHVSHVYNFDIPDDPSEYVHRIGRTARAGREGKVINVVAD 343
Query: 241 ITSEELFVLQRYENELKFKSEEL 263
+ L + K + E+L
Sbjct: 344 VDKGGFTRLSKMHRNFKIEREDL 366
>gi|325287731|ref|YP_004263521.1| DEAD/DEAH box helicase [Cellulophaga lytica DSM 7489]
gi|324323185|gb|ADY30650.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
7489]
Length = 445
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 132/269 (49%), Gaps = 35/269 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC--NNRQTVFASA 59
G L L++++ + S + LV+DE D + V+SLK L + + +++T+ +A
Sbjct: 132 GRLIDLLKRNAITINSAKYLVLDEAD------EMVTSLKDGLDTIVAALPKDKRTILFTA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + I Q + V V VN + + H++V+ K + L+ + S
Sbjct: 186 TMPGTIK----QIVQNYLSKHVTQVSVNMETVGNTSIDHQYVVVEPIEKLEVLMHFLNSK 241
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ GIIF K+K A N + L ++ F S + GS + + M
Sbjct: 242 EGQRGIIFC-----KTKAAVNKLAKNLAINKFSSGALHGSLTQPIRDRIMG--------- 287
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ R+G +LV+TD+AARG+D+ E T++ N+ LP Y+HR+GRT R + +++T
Sbjct: 288 QFREGHIKILVATDLAARGLDVKEITYVVNYHLPDVYETYVHRSGRTARA--GADGFSLT 345
Query: 239 SIITSEELFVLQRYENEL-----KFKSEE 262
I+ EE + +ENEL KFK +
Sbjct: 346 -ILQKEEEQDIAEFENELGITFKKFKKAD 373
>gi|317127478|ref|YP_004093760.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
gi|315472426|gb|ADU29029.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 374
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 121/247 (48%), Gaps = 30/247 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G +L+++ K+ V+ +V DE D LF++ KQ+ + K S+ +RQ + SA
Sbjct: 131 GRAVELMQQKKLKVHEVKTVVFDEADQLFSNEHQKQIDHVLK-----STLKDRQILVFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++ + + + + + VV V ++ + + H ++IC ++ K TL LI
Sbjct: 186 TLNE---LVEEKAKIRMNDAKVVRVKLD---EEANNVEHVYIICEQRDKMTTLRRLINLK 239
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
+ + F + LL + + + LL E R +L +
Sbjct: 240 GLRA-LAF-------------SNDIQLLSTYAAKLEYDGMPLGLLHSETTKQEREQALRQ 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R+ LL++TD+A+RG+D+ E TH++ D+PR A Y HRAGRTGR + ++ TV S
Sbjct: 286 FREKRTPLLLATDVASRGLDIKELTHVFQLDVPRDAEQYKHRAGRTGR---AGQEGTVIS 342
Query: 240 IITSEEL 246
++T +E+
Sbjct: 343 LVTEQEV 349
>gi|89093138|ref|ZP_01166088.1| ATP-dependent RNA helicase [Neptuniibacter caesariensis]
gi|89082434|gb|EAR61656.1| ATP-dependent RNA helicase [Neptuniibacter caesariensis]
Length = 417
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 105/226 (46%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ K+ L ++ LV+DE D + + L +L + N QT+ SA+
Sbjct: 134 GRLLDLMRKNALDLRGLKALVLDEADRMLDLGF-ADELDDILDQ--TPGNVQTLLFSATF 190
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L + + + V + V LP LH R + + + L LI+ +
Sbjct: 191 PDKVKELTEELLR-----NPVEISVKQEATLPDQLHQRAIEVDRNNRTMLLKHLIKQEKW 245
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ +IFVG SK+ N L Y+ L ++ R +L +
Sbjct: 246 QQLLIFVG-----SKRTANNIELKL--------YRSGIQSSTLHGDLTQKERLGALEDFS 292
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+G +L++TD+AARGID+P + N+DLPR+ DY+HRAGRT R
Sbjct: 293 KGRCKILIATDLAARGIDIPSLPCVLNYDLPRATSDYVHRAGRTAR 338
>gi|241204840|ref|YP_002975936.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240858730|gb|ACS56397.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 521
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 116/243 (47%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + K++ RQT+F SA
Sbjct: 138 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPF-----TRQTLFFSA 192
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKMKYQTLL-SLIQ 117
++P + L + Q + +V A + RFV GK + + +L L++
Sbjct: 193 TMPSEIQKLADRFLQNPERIEVAKPASAA-----ETVTQRFVASHGKDYEKRAVLRELVR 247
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ I+F + + + D + + V L +M+ SR +
Sbjct: 248 AQTELKNAIVFCNRKKD-------------VADLFRSLERHGFSVGALHGDMDQRSRTMT 294
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S +T
Sbjct: 295 LQSFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFT 354
Query: 237 VTS 239
+ +
Sbjct: 355 LVT 357
>gi|403070967|ref|ZP_10912299.1| ATP-dependent RNA helicase [Oceanobacillus sp. Ndiop]
Length = 492
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 126/266 (47%), Gaps = 24/266 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + ++++VQ V+DE D + N + ++ +L + RQT+ SA++
Sbjct: 129 GRLLDHMRRKTIRIDAVQTAVLDEADEMLNMG-FIDDIRDILKGIPA--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R + + + + V V A + + FV +K K+ TL + + ++P
Sbjct: 186 PKEIRDIATTLMKSPKE-----VKVKAKEMTVENIDQFFVEIPEKYKFDTLNNHMDINSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I+F ++KK + + L + Y+ + ++ R + L + +
Sbjct: 241 DLAIVF-----SRTKKRVDEITEGLQ----ARGYRAEG----IHGDLTQGKRMSVLNKFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + E S +
Sbjct: 288 SGRVDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGRTGE---AISFV 344
Query: 242 TSEELFVLQRYENELKFKSEELTLQT 267
T E+ L E K K + L T
Sbjct: 345 TPREIAHLHLIEKTTKSKMKRLMPPT 370
>gi|366999310|ref|XP_003684391.1| hypothetical protein TPHA_0B02850 [Tetrapisispora phaffii CBS 4417]
gi|357522687|emb|CCE61957.1| hypothetical protein TPHA_0B02850 [Tetrapisispora phaffii CBS 4417]
Length = 628
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 109/233 (46%), Gaps = 31/233 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L L+E+ L +V+ LV+DE D + + + ++ ++ NNRQT+ SA
Sbjct: 297 GRLNDLLERGRVSLANVKYLVLDEADRMLDMGFE-PQIRHIVDGCDMPDANNRQTLMFSA 355
Query: 60 SIP---QH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLS 114
+ P QH R FL+ D + + V + + R + K LL
Sbjct: 356 TFPDDIQHLARDFLN----------DYIFLSVGRVGSTSENITQRILYVEDMDKKSALLD 405
Query: 115 LIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
L+ ++ +IFV E + A ++ DF++ + G D +E E
Sbjct: 406 LLAAENDGLTLIFV----ETKRMADELTDFLIMQDFMATAIHG--DRTQIERER------ 453
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L + G +LV+T +AARG+D+P TH+ N+DLP DY+HR GRTGR
Sbjct: 454 -ALAAFKGGRANVLVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGR 505
>gi|220933542|ref|YP_002512441.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio
sulfidophilus HL-EbGr7]
gi|219994852|gb|ACL71454.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio
sulfidophilus HL-EbGr7]
Length = 432
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 119/267 (44%), Gaps = 36/267 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + ++ +F + VQV+V+DE D +F+ + ++ LL + RQ++ SA++
Sbjct: 149 GRIIDYFKQKVFDMRVVQVMVLDEADRMFDLGF-IKDIRFLLRRMTPPTERQSMLFSATL 207
Query: 62 PQHR------RFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSL 115
HR ++N + + V V + P+ K LL L
Sbjct: 208 -SHRVMELAYEHMNNPEKVQTRDEQVTAQRVRQVVYYPA----------NPEKIPLLLGL 256
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRA 174
++ P ++FV +T + D L KG+ V +L ++ R
Sbjct: 257 MKRIGPSRSMVFV--------------NTKHMADKLEAWLKGNDIKVAVLSGDVPQQKRQ 302
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEK 234
L + +LV+TD+AARG+ +P+ +H++NFDLP+S DY+HR GRTGR + +
Sbjct: 303 RLLKQFENDEFQVLVATDVAARGLHIPDVSHVFNFDLPQSGEDYVHRIGRTGR---AGAE 359
Query: 235 WTVTSIITSEELFVLQRYENELKFKSE 261
S + F L E + FK E
Sbjct: 360 GDAVSFACEDSAFYLPEIEQYIGFKIE 386
>gi|301602401|gb|ADK79106.1| vasa-like protein [Dicentrarchus labrax]
Length = 637
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 113/228 (49%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L V+ V+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 336 GRLLDVIGRGKVGLSKVRYFVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 394
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + + + K+D + + V + S + FV K K + LL L+++
Sbjct: 395 TYPEDIQRMA----ADFLKTDYLFLAVGVVGGACSDVEQTFVQVTKFSKREQLLDLLKTT 450
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV ++K+ + +T L + + + + + R +L +
Sbjct: 451 GMERTMVFV-----ETKRQADFIATYLCQEKVPTTS--------IHGDREQREREQALAD 497
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 498 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGR 545
>gi|307153172|ref|YP_003888556.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 7822]
gi|306983400|gb|ADN15281.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822]
Length = 482
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 128/256 (50%), Gaps = 25/256 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+E+ L+ +Q+ V+DE D + S + +KK+L S RQT SA++
Sbjct: 130 GRVIDLLERKKLSLDELQMAVLDEADEML-SMGFIDDVKKILQQTPST--RQTACFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCL-HHRFVICGKKMKYQTLLSLIQSDA 120
P + L + ++ KS VV V + P + H +++ K + L +++ +
Sbjct: 187 PPEIKRLID----QFLKSPVV-VSATQHEATPERIDQHIYMVPRGWSKLKALQPILEIED 241
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PES IIFV + ++ G + VD Y G+ ++ R +
Sbjct: 242 PESAIIFVRTKQTATELTGKLQESGHHVD----EYHGN---------LSQAQRERLVQRF 288
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R+G L+V+TDIAARG+D+ + +H+ NFDLP + Y+HR GRTGR + + T S+
Sbjct: 289 REGKIKLVVATDIAARGLDVEDLSHVINFDLPDNTETYIHRIGRTGR---AGKTGTAISL 345
Query: 241 ITSEELFVLQRYENEL 256
I + +L++ E+ +
Sbjct: 346 IEPIDRRMLRQIEHRV 361
>gi|251780900|ref|ZP_04823820.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243085215|gb|EES51105.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 432
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI++ L +V+ V+DE D +F+ V +KK++A RQ + SA++
Sbjct: 134 GRLLDLIDQKYIDLSNVKHFVLDEADRMFDMG-MVRDVKKIVAKLPKV--RQNLLFSATM 190
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L N I + D V V V + + KK K L+ L++ ++
Sbjct: 191 PSEVKSLVNSILK-----DPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLVHLLKDESI 245
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+S ++F ++K N + + + K ++ + + N+R +L +
Sbjct: 246 KSLLVF-----SRTKYGAN--------NIVKDLAKTGTESQAIHGNKSQNARQLALSNFK 292
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+G +LV+TDIAARGID+ +H+ N+DLP Y+HR GRTGR
Sbjct: 293 EGKIRVLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRIGRTGR 338
>gi|187934290|ref|YP_001887690.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
Eklund 17B]
gi|187722443|gb|ACD23664.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
Eklund 17B]
Length = 432
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI++ L +V+ V+DE D +F+ V +KK++A RQ + SA++
Sbjct: 134 GRLLDLIDQKYIDLSNVKHFVLDEADRMFDMG-MVRDVKKIVAKLPKV--RQNLLFSATM 190
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L N I + D V V V + + KK K L+ L++ ++
Sbjct: 191 PSEVKSLVNSILK-----DPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLVHLLKDESI 245
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+S ++F ++K N + + + K ++ + + N+R +L +
Sbjct: 246 KSLLVF-----SRTKYGAN--------NIVKDLAKTGTESQAIHGNKSQNARQLALSNFK 292
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+G +LV+TDIAARGID+ +H+ N+DLP Y+HR GRTGR
Sbjct: 293 EGKIRVLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRIGRTGR 338
>gi|257899462|ref|ZP_05679115.1| helicase [Enterococcus faecium Com15]
gi|293573030|ref|ZP_06683972.1| cold-shock deAd box protein a [Enterococcus faecium E980]
gi|430842364|ref|ZP_19460279.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|431081588|ref|ZP_19495678.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|431118220|ref|ZP_19498174.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|431592214|ref|ZP_19521450.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
gi|431738949|ref|ZP_19527889.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|431740772|ref|ZP_19529683.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
gi|257837374|gb|EEV62448.1| helicase [Enterococcus faecium Com15]
gi|291606932|gb|EFF36312.1| cold-shock deAd box protein a [Enterococcus faecium E980]
gi|430493445|gb|ELA69748.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|430565520|gb|ELB04666.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|430568177|gb|ELB07234.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|430591839|gb|ELB29866.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
gi|430596492|gb|ELB34316.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|430602855|gb|ELB40405.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
Length = 503
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL +VQ LV+DE D + N + ++K+++ RQT+ SA++
Sbjct: 128 GRMLDHINRHTLKLGTVQTLVLDEADEMLNMG-FLEDIEKIISQVPE--QRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ KS HV + A + + +V + K+ + L P
Sbjct: 185 PPAIK----NIGVKFMKSPH-HVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + Y+ + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYRAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 NGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMDYLHVIEN 356
>gi|392381155|ref|YP_005030352.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Azospirillum brasilense Sp245]
gi|356876120|emb|CCC96873.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Azospirillum brasilense Sp245]
Length = 513
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 128/263 (48%), Gaps = 45/263 (17%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSC-NNRQTVFAS 58
G L + ++ L +V+VL++DE D + + V ++ K C ++RQT+ +
Sbjct: 169 GRLLDHVSRNRIDLSAVEVLILDEADRMLDMGFLDDVETIAK------CCPDSRQTLLFT 222
Query: 59 ASIPQHRR-------FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQT 111
A++ RR L N ++ +S V+V LHH M ++
Sbjct: 223 ATL--DRRMAQLAGNLLRNPVRVA-VESATTSVNVE------QRLHH-----ADDMDHKR 268
Query: 112 LLSLIQSDAPESG--IIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMN 169
L +D PE G IIF +K+ +A L + LS++ ++ L +M+
Sbjct: 269 RLLKHFADLPEVGKAIIFAA-----TKRDADA-----LAEELSDAGHAAA---ALHGDMD 315
Query: 170 FNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKP 229
R +L +R G LLV+TD+AARGID+ + TH+ NFDLPRSA DY+HR GRTGR
Sbjct: 316 QFKRNRTLQRLRTGQVRLLVATDVAARGIDVRDITHVINFDLPRSAEDYVHRIGRTGRAG 375
Query: 230 FSDEKWTVTSIITSEELFVLQRY 252
S + + + LF ++RY
Sbjct: 376 ASGVAISFAARADRDALFRIERY 398
>gi|345859080|ref|ZP_08811447.1| DEAD-box ATP-dependent RNA helicase cshA [Desulfosporosinus sp. OT]
gi|344327834|gb|EGW39245.1| DEAD-box ATP-dependent RNA helicase cshA [Desulfosporosinus sp. OT]
Length = 492
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 128/262 (48%), Gaps = 32/262 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L + + +L ++++V+DE D + N + + ++ K + RQT+ SA
Sbjct: 129 GRLMDHMRRRTIRLNDIKIVVLDEADEMLNMGFLEDIETILKEIPE-----ERQTLLFSA 183
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P R + N Q+ + +++ + + S +V +++K+ L ++
Sbjct: 184 TMP---RQIQNIAQRFMKEPELISIKATGVTV--SDTEQHYVEVSERLKFDVLSRILDIQ 238
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSN--SYKGSSDVLLLEEEMNFNSRAASL 177
+P+ I+F T VD LS S +G S + ++ + R + L
Sbjct: 239 SPDLSIVFA--------------RTKRRVDELSEALSKRGYS-AEGIHGDLTQSKRDSVL 283
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH++NFD+P+ Y+HR GRTGR + +
Sbjct: 284 RQFKDGTIEVLVATDVAARGLDISGVTHVFNFDIPQDPESYVHRVGRTGR---AGKTGLA 340
Query: 238 TSIITSEELFVLQRYENELKFK 259
+++T E+ +L+ E+ +K +
Sbjct: 341 ITLVTPREIGMLRLIESVIKRR 362
>gi|338535190|ref|YP_004668524.1| RNA helicase DeaD [Myxococcus fulvus HW-1]
gi|337261286|gb|AEI67446.1| RNA helicase DeaD [Myxococcus fulvus HW-1]
Length = 552
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 30/226 (13%)
Query: 8 IEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQH--- 64
+ + +L+ V+V+V+DE D + + L+ +L+ + +RQT SA++P
Sbjct: 130 LRRGTLQLDDVRVVVLDEADEMLDMGF-AEDLEAILSG--TPEDRQTALFSATLPPRIAS 186
Query: 65 --RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPE 122
R LH ++ K + V +P +V+ + K TL L+ ++P
Sbjct: 187 IAERHLHEPVRVKIAREKVEQGE------MPRVRQTAYVVP-RAFKIATLGRLLDVESPT 239
Query: 123 SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEVR 181
+ IIF ++E VD L+ S G L M R + +++
Sbjct: 240 AAIIFCRTRTE--------------VDDLTVSLNGRGWRAHALHGGMTQEQRDRVIKQLK 285
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
G LLV+TD+AARG+D+P +H+ NFD+P + Y+HR GRTGR
Sbjct: 286 SQGTDLLVATDVAARGLDIPRLSHVVNFDVPNAPEAYVHRIGRTGR 331
>gi|351729630|ref|ZP_08947321.1| dead/deah box helicase domain-containing protein [Acidovorax
radicis N35]
Length = 426
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 121/271 (44%), Gaps = 38/271 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+E + +L +V LV+DE D L + L ++LA + RQ +F SA+
Sbjct: 134 GRLLDLVEHNALRLSAVAHLVLDEADRLLDLGF-AEELTRVLALLPA--QRQNLFFSATF 190
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L + + + + +V H N + R + + Q L L++ +
Sbjct: 191 PAAVQALADGLLKNPVRVEVPHTPGNE-----PAIEQRAIAVDAVRRTQLLRHLVKEHSW 245
Query: 122 ESGIIFVGEQ------SEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
++FV Q +EK KAG + + G ++ +R
Sbjct: 246 SRVLVFVATQYAAEHVAEKLYKAG----------IFATPFHGG---------LSQGARKQ 286
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L E + ++V+TD+AARGID+ + + N+DLPRSA+DY+HR GRTGR + E
Sbjct: 287 VLQEFKDERWQVVVTTDLAARGIDIAQLPAVVNYDLPRSAVDYVHRIGRTGR---AGESG 343
Query: 236 TVTSIIT--SEELFVLQRYENELKFKSEELT 264
S +T +E F L L E++
Sbjct: 344 MAVSFVTADAEAHFRLIEKRQHLSLPREQIA 374
>gi|407893670|ref|ZP_11152700.1| ATP-dependent RNA helicase RhlE [Diplorickettsia massiliensis 20B]
Length = 354
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 22/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I++ +Q LV+DE D +F+ + +++K+L RQ++ SA++
Sbjct: 139 GRLLDHIDRQNIDFSHLQFLVLDEADQMFDFGF-LPAIRKILGYLP--KKRQSLLFSATM 195
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R L + I + V + + A+ P + + R + +K L+ L+Q
Sbjct: 196 PKAIRLLADEILKHP-----VSIQIGALAP-ATTVEQRLYPVSESLKTALLIRLLQETPV 249
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+S +IF + + A + + + S S++G+ ++ + R +L + R
Sbjct: 250 DSILIFTRTKHRAKRLAEHLER----LGYRSTSFQGN---------LSQSRRQMALDQFR 296
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+G +LV+TDIAARGID+ +H+ NFD+P + Y HR GRTGR
Sbjct: 297 RGVLQILVATDIAARGIDVANVSHVINFDMPATTDAYTHRIGRTGR 342
>gi|16331758|ref|NP_442486.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803]
gi|383323501|ref|YP_005384355.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326670|ref|YP_005387524.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492554|ref|YP_005410231.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437822|ref|YP_005652547.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803]
gi|451815910|ref|YP_007452362.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803]
gi|1001719|dbj|BAA10556.1| ATP-dependent RNA helicase; DeaD [Synechocystis sp. PCC 6803]
gi|339274855|dbj|BAK51342.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803]
gi|359272821|dbj|BAL30340.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275991|dbj|BAL33509.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279161|dbj|BAL36678.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407960608|dbj|BAM53848.1| ATP-dependent RNA helicase DeaD [Bacillus subtilis BEST7613]
gi|451781879|gb|AGF52848.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803]
Length = 492
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 127/265 (47%), Gaps = 25/265 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI++ KLE++Q +V+DE D + S + +K +L + RQT SA++
Sbjct: 133 GRVIDLIDRKKLKLETIQWVVLDEADEML-SMGFIDDVKTIL--RKTPPTRQTACFSATM 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSLIQSDA 120
P+ + L N +D V V + P+ + + + K + L +++ +
Sbjct: 190 PREIKELVNQF-----LNDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKALQPILEMED 244
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PES IIFV ++K+ D S + V ++ + R +
Sbjct: 245 PESAIIFV-----RTKQTA--------ADLTSRLQEAGHSVDEYHGNLSQSQRERLVHRF 291
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R G L+V+TDIAARG+D+ +H+ NFDLP +A Y+HR GRTGR + + ++
Sbjct: 292 RDGKIKLVVATDIAARGLDVNNLSHVVNFDLPDNAETYIHRIGRTGR---AGKTGKAIAL 348
Query: 241 ITSEELFVLQRYENELKFKSEELTL 265
+ + +L+ EN LK + E T+
Sbjct: 349 VEPIDRRLLRSIENRLKQQIEVCTI 373
>gi|308272082|emb|CBX28690.1| ATP-dependent RNA helicase rhlE [uncultured Desulfobacterium sp.]
Length = 398
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 132/271 (48%), Gaps = 37/271 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + L V+VLVIDE D +F+ + ++++L + RQT+ SA++
Sbjct: 129 GRLLDHMTRKTIDLTRVEVLVIDEADHMFDMG-FLPDIRRILKHLPA--QRQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L I + D + + V+ P + H + + + +K LL L++
Sbjct: 186 PDEIKSLAKDILK-----DPITIKVSETVPADTVSHAHYPVA-QHLKTAFLLKLLEHINS 239
Query: 122 ESGIIFVGEQ------SEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+S ++F + E+ KAG F S S +G+ ++ R A
Sbjct: 240 KSVLVFTRTKHRAKHLDEQLAKAG----------FRSASLQGN---------LSQVRRQA 280
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+L R G +LV+TDIAARGID+ + +H+ N+D+P + Y+HR GRTGR +D+
Sbjct: 281 ALDGFRNGRIQVLVATDIAARGIDVCKISHVINYDIPDTPDAYIHRIGRTGR---ADQSG 337
Query: 236 TVTSIITSEELFVLQRYENELKFKSEELTLQ 266
++ITSE+ ++ + + K E TL+
Sbjct: 338 DAFTLITSEDKKMVNIIDRVIGSKIEHRTLK 368
>gi|154416622|ref|XP_001581333.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121915559|gb|EAY20347.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 541
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 110/230 (47%), Gaps = 26/230 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS--SCNNRQTVFASA 59
G L ++++H L V+ L++DE D + + + +++++ + ++RQT+ SA
Sbjct: 250 GRLIDILKQHCITLSEVRFLILDEADRMLDMGFE-PQMQEVINGWDMPPADDRQTMLFSA 308
Query: 60 SIPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+ P R + ++ K+ + V ++ P + RF+ C + K+ LL +I+
Sbjct: 309 TFPDAVRNLARDFMRPKYCRISV------GMQDAPKSIEQRFIYCSEMDKFSELLGVIKE 362
Query: 119 -DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
D P ++F + S + FL Y + V+ + E + R A+L
Sbjct: 363 VDGPT--LVFAERKV----------SVDRIERFL---YDEHTAVVAIHGERQMDQRLAAL 407
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ G ++V+TD+A+RG+D+ H+ N DLP Y HR GRTGR
Sbjct: 408 RQFTTGRANIMVATDVASRGLDISNVAHVINLDLPTDLDTYTHRIGRTGR 457
>gi|409194658|gb|AFV31619.1| vasa [Acanthopagrus schlegelii]
Length = 395
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 112/228 (49%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L ++ V+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 96 GRLLDMIGRGKIGLTKLRYFVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 154
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P + + + K+D + + V + S + FV K K + LL L+++
Sbjct: 155 TYPDDIQRMA----ADFLKTDYLFLAVGVVGAACSDVEQTFVQVTKFSKREQLLDLLKTT 210
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV ++K+ + +T L + + + + + R +L +
Sbjct: 211 GTERTMVFV-----ETKRQADFIATYLCQEKVPTTS--------IHGDREQREREQALAD 257
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G ++V+T +AARG+D+P+ H+ NFDLP+ +Y+HR GRTGR
Sbjct: 258 FRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPKEIDEYVHRIGRTGR 305
>gi|254413664|ref|ZP_05027434.1| DEAD/DEAH box helicase domain protein [Coleofasciculus
chthonoplastes PCC 7420]
gi|196179771|gb|EDX74765.1| DEAD/DEAH box helicase domain protein [Coleofasciculus
chthonoplastes PCC 7420]
Length = 464
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 123/260 (47%), Gaps = 31/260 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+++ KL+ V+ +V+DE D + S + +KK+L + RQT SA++
Sbjct: 130 GRVIDLLDRGDLKLDQVKWVVLDEADEML-SMGFIDDVKKILKQ--APKERQTACFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVI----CGKKMKYQTLLSLIQ 117
P+ R L N ++ KS V V V K P+ + R + C K Q +L+L
Sbjct: 187 PKAIRDLVN----QFLKSPVT-VTVELPKATPARIEQRVYMIPRGCSKSKALQPILAL-- 239
Query: 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ PE+ +IFV + A S + Y G +++ + R L
Sbjct: 240 -EDPEAALIFV----RTRRSAAELTSQLQAAGHSVDEYHG---------DLSQSQRERLL 285
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
RQ +V+TDIAARG+D+ TH+ N+DLP Y+HR GRTGR + + T
Sbjct: 286 SRFRQSQVRWVVATDIAARGLDVDHLTHVINYDLPDQVESYIHRIGRTGR---AGKTGTA 342
Query: 238 TSIITSEELFVLQRYENELK 257
S+I E L + E +++
Sbjct: 343 ISLIQPFERRKLHQIERKVR 362
>gi|89147697|gb|ABD62707.1| vasa protein [Acanthopagrus schlegelii]
Length = 260
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 112/228 (49%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L ++ V+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 48 GRLLDMIGRGKIGLTKLRYFVLDEADRMLDMGFE-PDMRRLVGSPGVPSKENRQTLMFSA 106
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P + + + K+D + + V + S + FV K K + LL L+++
Sbjct: 107 TYPDDIQRM----AADFLKTDYLFLAVGVVGAACSDVEQTFVQVTKFSKREQLLDLLKTT 162
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV ++K+ + +T L + + + + + R +L +
Sbjct: 163 GTERTMVFV-----ETKRQADFIATYLCQEKVPTTS--------IHGDREQREREQALAD 209
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G ++V+T +AARG+D+P+ H+ NFDLP+ +Y+HR GRTGR
Sbjct: 210 FRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPKEIDEYVHRIGRTGR 257
>gi|222056385|ref|YP_002538747.1| DEAD/DEAH box helicase [Geobacter daltonii FRC-32]
gi|221565674|gb|ACM21646.1| DEAD/DEAH box helicase domain protein [Geobacter daltonii FRC-32]
Length = 443
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 131/274 (47%), Gaps = 43/274 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + L ++VLV+DE D +F+ + ++++L RQT+ SA++
Sbjct: 129 GRLLDHMGQRTIDLSHLEVLVLDEADQMFDMGF-LPDIRRILGQLP--KKRQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L I + V V V + P P ++H + +K LL L++
Sbjct: 186 PPDIKRLAGEILH-----NPVTVQVGSTAP-PVTVNHAIYPVSQHLKTPLLLELLRHTDK 239
Query: 122 ESGIIF---------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172
+S ++F VGEQ EK+ Y+ +S L+ ++ N
Sbjct: 240 QSVLVFTKTKHRAKRVGEQLEKA------------------GYRAAS----LQGNLSQNR 277
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSD 232
R A+L R G +LV+TDIAARGID+ + +H+ N+D+ A Y+HR GRTGR S
Sbjct: 278 RQAALDGFRDGSFQILVATDIAARGIDVTQISHVVNYDITDKAETYIHRIGRTGRASRSG 337
Query: 233 EKWTVTSIITSEELFVLQRYENELKFKSEELTLQ 266
+ +T ++T+E+ +++ E L E T++
Sbjct: 338 DAFT---LVTAEDTAMVRTIEKALGAPLERRTVE 368
>gi|162451888|ref|YP_001614255.1| hypothetical protein sce3615 [Sorangium cellulosum So ce56]
gi|161162470|emb|CAN93775.1| unnamed protein product [Sorangium cellulosum So ce56]
Length = 812
Score = 87.8 bits (216), Expect = 5e-15, Method: Composition-based stats.
Identities = 68/247 (27%), Positives = 118/247 (47%), Gaps = 34/247 (13%)
Query: 7 LIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRR 66
++ KHI ++LV+DE D + + + L +LA RQT+ SA++P
Sbjct: 167 IVAKHI------RLLVLDECDEMLSMGFE-RELTAILAELPP--ERQTLLFSATLPPD-- 215
Query: 67 FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGII 126
+ + K + + + +A+ L H+ ++I G K+ +L+ +I+ + PE+ +I
Sbjct: 216 -IERIARSKLRSPEFITLSGDAVGAL-QIQHYVYLITGDKLT--SLVRIIEVENPENAVI 271
Query: 127 FVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGY 186
F + E AG D+L+ S R + R+G
Sbjct: 272 FCNTKDETEAVAGALKRQGYDADWLNGDLPQSD-------------REKVMSATREGRLR 318
Query: 187 LLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEE- 245
LV+TD+AARGID+ TH+ N+D P+ A Y+HR GRTGR + T ++IT ++
Sbjct: 319 FLVATDVAARGIDISHLTHVINYDFPQDAEAYVHRTGRTGR---AGRTGTAIALITPQDV 375
Query: 246 --LFVLQ 250
L++L+
Sbjct: 376 GPLYILR 382
>gi|403669622|ref|ZP_10934813.1| ATP-dependent RNA helicase exp9 [Kurthia sp. JC8E]
Length = 518
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 122/256 (47%), Gaps = 24/256 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I++ KLE+V+ LV+DE D + N + + +L + N RQT+ SA++
Sbjct: 129 GRILDHIKRRTLKLENVKTLVLDEADEMLNMGF-IEDINAILENVP--NERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + + ++ V + A + + FV ++ K+ L L+ P
Sbjct: 186 PPAIRKIADTFM-----TEPQSVKIKAKELTVDNIDQYFVKSQEREKFDILSRLLNVQKP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + +A S + +++ G +++ R + L + +
Sbjct: 241 ELAIVF-GRTKRRVDELSHALS---IRGYVAEGIHG---------DLSQAKRLSVLRQFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+ +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + +
Sbjct: 288 ENKIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKSGVAVTFV 344
Query: 242 TSEELFVLQRYENELK 257
T E+ L+ E K
Sbjct: 345 TPREMNYLRIVEETTK 360
>gi|11990882|dbj|BAB19807.1| vasa [Oreochromis niloticus]
Length = 645
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 22/229 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L V+ LV+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 343 GRLLDMIGRGKVGLTKVRYLVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 401
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + K+D + + V + S + FV K K + L+ L++S
Sbjct: 402 TFPEDIQRL----AADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKFAKREQLIDLLKST 457
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
E ++FV ++K+ + +T L + F + S G + R +L
Sbjct: 458 GSERTMVFV-----ETKRQADFIATILCQEKFPTTSIHGDREQW---------QREQALG 503
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ R G +LV+T + ARG+D+P+ + NFDLP + +Y+HR GRTGR
Sbjct: 504 DFRSGKCSVLVATSVGARGLDIPDVQFVVNFDLPNNIDEYVHRIGRTGR 552
>gi|407782169|ref|ZP_11129383.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
gi|407206339|gb|EKE76296.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
Length = 499
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 116/234 (49%), Gaps = 39/234 (16%)
Query: 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI-PQHRR----FLH 69
L+ V++LVIDE D + + + +++++ R+T+F SA++ P+ R+ FL
Sbjct: 144 LQDVKILVIDEADRMLDMG-FIPDIERIVGVLPKI--RRTLFFSATMAPEIRKLADKFLM 200
Query: 70 N----CIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGI 125
N + ++ + +D V H V+ G K K + L SLI+S+ ++
Sbjct: 201 NPKEISVAKQASTADTVAQH--------------LVVVGSKAKREALRSLIRSENVKNAF 246
Query: 126 IFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGG 185
IF + + TL + + + + L +M +R +L + +
Sbjct: 247 IFCNRKRDIG---------TLQKSLVQHGFS----AVALHGDMTQPARTETLAKFKNNEV 293
Query: 186 YLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
LLV +D+AARG+D+ +H++NFD+P +A DY+HR GRTGR + +T+ +
Sbjct: 294 SLLVCSDVAARGLDIQAVSHVFNFDVPSNAEDYVHRIGRTGRAGMTGRAYTIAT 347
>gi|424762589|ref|ZP_18190093.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TX1337RF]
gi|431757804|ref|ZP_19546433.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
gi|402424479|gb|EJV56656.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
TX1337RF]
gi|430618309|gb|ELB55156.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
Length = 503
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL +VQ LV+DE D + N + ++K+++ RQT+ SA++
Sbjct: 128 GRMLDHINRHTLKLGTVQTLVLDEADEMLNMG-FLEDIEKIISQVPE--QRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ KS HV + A + + +V + K+ + L P
Sbjct: 185 PPAIK----NIGVKFMKSPH-HVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + Y+ + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYRAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 SGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMDYLHVIEN 356
>gi|259047319|ref|ZP_05737720.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
gi|259036015|gb|EEW37270.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
Length = 520
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 115/250 (46%), Gaps = 37/250 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + KL +V+ LV+DE D + N + + S+ K + NRQT+ SA
Sbjct: 139 GRLLDHISRRTLKLGAVETLVLDEADEMLNMGFLEDIESIIKQVPE-----NRQTLLFSA 193
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + I ++ K D HV + + + + + FV C K+ + L+
Sbjct: 194 TMPDDIK----RIGVQFMK-DPEHVRIKSNEMTATLIDQYFVKCKDYEKFDIMTRLLDVQ 248
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS-----YKGSSDVLLLEEEMNFNSRA 174
PE I+F T VD L+ Y+ + +++ R
Sbjct: 249 TPELTIVF--------------GRTKRRVDELARGLEMRGYRAEG----IHGDLSQQKRM 290
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEK 234
+ L + + +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR E
Sbjct: 291 SVLRDFKNNHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRA--GQEG 348
Query: 235 WTVTSIITSE 244
+VT + +E
Sbjct: 349 MSVTFVTPNE 358
>gi|399036553|ref|ZP_10733587.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF122]
gi|398065881|gb|EJL57493.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF122]
Length = 483
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 117/243 (48%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + +V++ VIDE D + + + + KL+ RQT+F SA
Sbjct: 120 GRLLDHFERGKLLMSAVEIFVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 174
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKMKYQTLL-SLIQ 117
++P + L + Q + +V A + RFV GK + + +L LI+
Sbjct: 175 TMPPEIQKLADRFLQNPERVEVAKPASTA-----KTVTQRFVASHGKDYEKRAVLRDLIK 229
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ ++ IIF + + S+ L + + + L +M+ SR A
Sbjct: 230 AQTDLKNAIIFCNRKKDVSE---------LFRSLDRHGFSAGA----LHGDMDQRSRMAM 276
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S +T
Sbjct: 277 LQNFKDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFT 336
Query: 237 VTS 239
+ +
Sbjct: 337 IVT 339
>gi|395792193|ref|ZP_10471631.1| hypothetical protein MEI_00252 [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423714198|ref|ZP_17688457.1| hypothetical protein ME1_01203 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395421345|gb|EJF87601.1| hypothetical protein ME1_01203 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395432707|gb|EJF98682.1| hypothetical protein MEI_00252 [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 467
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 127/265 (47%), Gaps = 39/265 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + KL + RQT+F SA
Sbjct: 136 GRLLDHFERGKLLMMGVEILVIDEADRMLDMGFIPDIERICKL-----TPFTRQTLFFSA 190
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++ ++FLH+ + + TK+ + + R V G K L
Sbjct: 191 TMAPEISKLTKQFLHSPVSVEVTKASST----------ATTITQRLVKSGNNSWDKRAVL 240
Query: 113 LSLIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LI+++ E + IIF + + S+ L + +++ V L +M+
Sbjct: 241 RELIRNEGDELKNAIIFCNRKKDISE---------LFRSLIRHNFS----VGALHGDMDQ 287
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
++R ++L + + LLV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 288 HARMSTLADFKNNKLKLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANR 347
Query: 231 SDEKWTVTSIITSEELFVLQRYENE 255
S + +T+ + + + ++ NE
Sbjct: 348 SGKAFTIVTKADQKYISAIEEMSNE 372
>gi|162148820|ref|YP_001603281.1| cold-shock DEAD box protein A-like protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787397|emb|CAP56992.1| Cold-shock DEAD box protein A homolog [Gluconacetobacter
diazotrophicus PAl 5]
Length = 483
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 25/240 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L E+ L ++LVIDE D + + + ++K++A S RQT+F SA++
Sbjct: 113 GRLIDLFERGGLLLTQTRLLVIDEADRMLDMGF-IPDIEKIVAMLSPV--RQTLFFSATM 169
Query: 62 -PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P+ RR +Q + V+ + + + V+ + K + L +++ DA
Sbjct: 170 APEIRRLADMFLQNPK------EITVSRPSSVATTIETGLVVVDEADKRRVLRRMLRDDA 223
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS-YKGSSDVLLLEEEMNFNSRAASLLE 179
++ I+F + + VD L S K L ++ + R A+L
Sbjct: 224 VQNAIVFCNRKRD--------------VDVLYKSLVKHDFSAGALHGDLPQSVRFATLER 269
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV +D+AARGID+ +H++NFDLP A DY+HR GRTGR S +++ +
Sbjct: 270 FKSGELKILVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRSGHAYSLAT 329
>gi|347534130|ref|YP_004840800.1| DEAD/DEAH box helicase [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504186|gb|AEN98868.1| DEAD-box ATP-dependent RNA helicase cshA [Lactobacillus
sanfranciscensis TMW 1.1304]
Length = 505
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 32/262 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I++ KLE V+ LV+DE D + N + + S+ K ++ ++RQT+ SA
Sbjct: 142 GRLLDHIKRRTLKLEHVKFLVLDEADEMLNMGFLEDIESIIK-----NTPSDRQTMLFSA 196
Query: 60 SIPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQ 117
++P + I++ + +D + V + + + +V K++T+ L
Sbjct: 197 TMP-------DPIKRVGVQFMTDPKQIKVKSKELTTDLVDQYYVKVKDNEKFETMTRLFD 249
Query: 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ P+ I+F ++K+ + + L+ + YK + L ++ + R +
Sbjct: 250 VEQPKVTIVFC-----RTKRRVDEVAKGLI----ARGYKAAG----LHGDLTQSRRTQIM 296
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
E ++ LV+TD+AARGID+ TH+YNFD+P+ Y+HR GRTGR + T
Sbjct: 297 NEFKRDQINYLVATDVAARGIDVSGVTHVYNFDIPQDPESYVHRIGRTGR---AGHHGTS 353
Query: 238 TSIITSEELFVLQRYENELKFK 259
+ +T E+ L+ E K +
Sbjct: 354 VTFVTPNEMSYLRLVEKLTKVR 375
>gi|340617059|ref|YP_004735512.1| DEAD/DEAH box helicase [Zobellia galactanivorans]
gi|339731856|emb|CAZ95123.1| DEAD/DEAH RNA helicase [Zobellia galactanivorans]
Length = 385
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 30/240 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI++ ++ VLV+DE D + + + ++K+++ RQT+ SA++
Sbjct: 168 GRLNDLIDRKALNTQARSVLVLDEFDRMLDMG-FIKDIRKIVSGMHG--RRQTMLFSATV 224
Query: 62 -PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGK-KMKYQTLLSLIQSD 119
P R ++ I D + + V++ + + G+ + K++ L +L+ +
Sbjct: 225 DPSQERVINEII------GDPLRISVSSGTKSSDNVDQSIIRVGRDENKFEVLFNLVNAP 278
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGS---SDVLLLEEEMNFNSRAAS 176
A E ++F ++K+ VD LS S SDV+ + N+ SRA
Sbjct: 279 AFEKVLLFA-----ETKRG---------VDKLSKQLMQSGIRSDVIHGNKSQNYRSRAIE 324
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + G +LV+TD+AARGID+ TH+ N+ LP++ Y+HR GRTGR + +T
Sbjct: 325 LF--KSGKTKILVATDVAARGIDIKGVTHVINYQLPQTMDSYIHRIGRTGRAESTGTAYT 382
>gi|297595326|gb|ADI48178.1| vasa [Crepidula fornicata]
Length = 502
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 33/234 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS--SCNNRQTVFASA 59
G L IE+ ++ V+ L++DE D + + + S++KL+ S S + RQT+ SA
Sbjct: 193 GRLLDFIERGKISVKKVKFLILDEADRMLDMGFE-PSIRKLVESLGMPSKSERQTLMFSA 251
Query: 60 SIPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQ 117
+ IQQ +D + + V + S + F+ + K + L ++
Sbjct: 252 TFKAE-------IQQLAADFMNDYLFITVGIVGGACSDVEQTFLEVDRLQKREYLCDILN 304
Query: 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS-YKGSS---DVLLLEEEMNFNSR 173
S ++FVG++ + L FLS S Y +S D L E E
Sbjct: 305 SSGTNRVLVFVGQKR----------NADFLASFLSQSGYPTTSIHGDRLQRERE------ 348
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L++ ++G +L++T++AARG+D+P+ TH+ N+DLP +Y+HR GRTGR
Sbjct: 349 -EALMDFKRGKSPVLIATNVAARGLDIPDVTHVVNYDLPTDIDEYVHRIGRTGR 401
>gi|406671543|ref|ZP_11078782.1| hypothetical protein HMPREF9706_01042 [Facklamia hominis CCUG
36813]
gi|405580793|gb|EKB54852.1| hypothetical protein HMPREF9706_01042 [Facklamia hominis CCUG
36813]
Length = 485
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 109/231 (47%), Gaps = 31/231 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+++++ KL +VQ LV+DE D + N + +K ++ + RQT+ SA++
Sbjct: 129 GRLLDLLKRNVLKLNAVQTLVLDEADEMLNMGF-IEDIKAIIQQ--APETRQTLLFSATM 185
Query: 62 PQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P+ + FL N H+ + A + + C K+ L I
Sbjct: 186 PKAIKELAGQFLINA----------EHIKIKAQYLTTDLIEQYYTRCRDDEKFDILTRFI 235
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
P+ I+F ++KK + L + +G + L+ ++ R +
Sbjct: 236 DVQNPKQAIVFC-----RTKKRVDEVGRGL-------NLRGY-NAELIHGDITQQKRTSV 282
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ R+G LLV+TD+AARG+D+ TH+YN+D+ + Y+HR GRTGR
Sbjct: 283 IDAFRKGEVELLVATDVAARGLDISGVTHVYNYDITQDPESYVHRVGRTGR 333
>gi|119491286|ref|ZP_01623340.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106]
gi|119453450|gb|EAW34612.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106]
Length = 509
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 126/258 (48%), Gaps = 34/258 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+ + KL ++ LV+DE D + S + ++K+L + S +RQT F SA+I
Sbjct: 167 GRVLDLLSRGKLKLHGIKWLVLDEADEML-SMGFIQDVEKILEA--SSKDRQTAFFSATI 223
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHR-FVICGKKMKYQTLLSL 115
R+FL++ V V V K P + + + K + L +
Sbjct: 224 EPSIWKLVRKFLNSP----------VTVKVEQPKTTPKQISQEVYTVPRGWTKARALQPI 273
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRA 174
++ + PES I+FV ++K+A ++ L S + Y G+ +N + R
Sbjct: 274 LELEDPESAIVFV-----RTKQAAAELTSCLQGAGHSVDEYHGN---------LNQSQRE 319
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEK 234
L+ R+ +V+TDIAARG+D+ TH+ N+DLP +A Y+HR GRTGR +
Sbjct: 320 RLLVRFRKRQVRWIVATDIAARGLDVDHLTHVINYDLPDNAESYVHRIGRTGRAGREGKA 379
Query: 235 WTVTSIITSEELFVLQRY 252
T+ + +L +++R+
Sbjct: 380 ITLLQPMDRRKLRMIERH 397
>gi|348506862|ref|XP_003440976.1| PREDICTED: probable ATP-dependent RNA helicase DDX4, partial
[Oreochromis niloticus]
Length = 478
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 22/229 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L V+ LV+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 176 GRLLDMIGRGKVGLTKVRYLVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 234
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + K+D + + V + S + FV K K + L+ L++S
Sbjct: 235 TFPEDIQRL----AADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKFAKREQLIDLLKST 290
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
E ++FV ++K+ + +T L + F + S G + R +L
Sbjct: 291 GSERTMVFV-----ETKRQADFIATILCQEKFPTTSIHGDREQW---------QREQALG 336
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ R G +LV+T + ARG+D+P+ + NFDLP + +Y+HR GRTGR
Sbjct: 337 DFRSGKCSVLVATSVGARGLDIPDVQFVVNFDLPNNIDEYVHRIGRTGR 385
>gi|428773406|ref|YP_007165194.1| DEAD/DEAH box helicase [Cyanobacterium stanieri PCC 7202]
gi|428687685|gb|AFZ47545.1| DEAD/DEAH box helicase domain protein [Cyanobacterium stanieri PCC
7202]
Length = 483
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 137/273 (50%), Gaps = 40/273 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+ + KL+S++ +V+DE D + S + +K +L+ + + RQT SA++
Sbjct: 130 GRIIDLLNRKHLKLDSLRYVVLDEADEML-SMGFIDDVKTILSR--TPDTRQTTCFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSLIQSDA 120
P+ + L K +D V+V + PS + + + K +T+ +++ +
Sbjct: 187 PKEIQLLV-----KEFMTDAVNVTGEKPQDTPSRIEQVVYMVPRGWSKIKTIQPILEIED 241
Query: 121 PESGIIFV------GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
P+S IIFV E + K ++AG + + Y G +++ R
Sbjct: 242 PQSAIIFVRTKRTASELTSKLQEAGQS----------VDEYHG---------DLSQQQRE 282
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEK 234
+ R G ++V+TDIAARG+D+ + TH++NFDLP + Y+HR GRTGR + ++
Sbjct: 283 RLIQRWRDGKIKVVVATDIAARGLDVSDLTHVFNFDLPDNTETYIHRIGRTGR---AGKE 339
Query: 235 WTVTSIITSEELFVLQRYENELKFKSEELTLQT 267
+++ + +L++ E LK + +T++T
Sbjct: 340 GKAIALVEPSDRRLLRQIERRLK---QSITVET 369
>gi|254500508|ref|ZP_05112659.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
gi|222436579|gb|EEE43258.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
Length = 480
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 116/243 (47%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L+ V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 131 GRLLDHFERGKLLLQGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTLLSLIQ 117
++P + L Q + +V A + + G K K L L++
Sbjct: 186 TMPPEIQRLTETFLQNPARIEVAPTSSTA-----ENVTQQLKAAGGKDYDKRVALRELLE 240
Query: 118 -SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
++ ++ I+F + + S TL + Y +V L +M+ +R
Sbjct: 241 GAEDLQNAIVFCNRKRDIS---------TLFRSLERHEY----NVGALHGDMDQRTRMMM 287
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L R+G LLV++D+AARG+D+PE +H++N+D+P +A DY+HR GRTGR S +T
Sbjct: 288 LENFRKGAIKLLVASDVAARGLDIPEVSHVFNYDVPINAEDYVHRIGRTGRAGRSGTAYT 347
Query: 237 VTS 239
+ +
Sbjct: 348 LVT 350
>gi|403514287|ref|YP_006655107.1| ATP-dependent RNA helicase-like protein [Lactobacillus helveticus
R0052]
gi|403079725|gb|AFR21303.1| ATP-dependent RNA helicase-like protein [Lactobacillus helveticus
R0052]
Length = 499
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 123/267 (46%), Gaps = 26/267 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ L+ V +V+DE D + + + ++ +L +C +QT+ SA++
Sbjct: 129 GRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGF-IQDIESILKYAKNC--KQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L I +K+ K + V + A + + FV + K+ + LI P
Sbjct: 186 P--KPILR--IGEKFMKDPAI-VQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
+ ++F T VD L+ + + + +++ R A L
Sbjct: 241 DLALVF--------------GRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRF 286
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R+G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + +
Sbjct: 287 REGKLDILVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGR---AGQNGVSVTF 343
Query: 241 ITSEELFVLQRYENELKFKSEELTLQT 267
+T E+ ++ E K K L L T
Sbjct: 344 VTPNEIGYMRTIEQLTKKKMSPLRLPT 370
>gi|403052034|ref|ZP_10906518.1| ATP-dependent RNA helicase RhlB [Acinetobacter bereziniae LMG 1003]
gi|445418409|ref|ZP_21434896.1| DEAD/DEAH box helicase [Acinetobacter sp. WC-743]
gi|444760745|gb|ELW85181.1| DEAD/DEAH box helicase [Acinetobacter sp. WC-743]
Length = 383
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 111/229 (48%), Gaps = 25/229 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L E+ L+ ++ LVIDE D L + + S+K+++ RQT+ SA+
Sbjct: 138 GRLIDFTEQKEIWLDQIEFLVIDEADRLLDMGF-IPSVKRIVRFSPRKEQRQTLMFSAT- 195
Query: 62 PQHRRFLHNCIQ--QKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
F ++ + Q+W + V V + K + + R + KK KY+ L ++ +
Sbjct: 196 -----FSYDVLNLAQQWL-FEPVTVEIEPEKKTNADVEQRVYVVEKKDKYKLLREILTDE 249
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFL-SNSYKGSSDVLLLEEEMNFNSRAASLL 178
E +IF + + K L D L ++ YK V++L E+ + R L
Sbjct: 250 PIEKVMIFANRRDQVRK----------LYDHLKADGYK----VVMLSGEIAQDKRLKMLD 295
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ + G ++++TD+A RGI + +H+ NF LP + DY+HR GRTGR
Sbjct: 296 QFKNGKHNIMIATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGR 344
>gi|257867061|ref|ZP_05646714.1| helicase [Enterococcus casseliflavus EC30]
gi|257873396|ref|ZP_05653049.1| helicase [Enterococcus casseliflavus EC10]
gi|257877139|ref|ZP_05656792.1| helicase [Enterococcus casseliflavus EC20]
gi|257801117|gb|EEV30047.1| helicase [Enterococcus casseliflavus EC30]
gi|257807560|gb|EEV36382.1| helicase [Enterococcus casseliflavus EC10]
gi|257811305|gb|EEV40125.1| helicase [Enterococcus casseliflavus EC20]
Length = 507
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL +V+ LV+DE D + N + ++K+++ RQT+ SA++
Sbjct: 128 GRMLDHINRHTLKLGTVETLVLDEADEMLNMGF-LEDIEKIISQVPDV--RQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ K + HV + A + + +V K+ + L+ P
Sbjct: 185 PPAIK----NIGVKFMK-EPEHVQIKAKEMTADLIDQYYVRSKDYEKFDIMTRLLDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + YK + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYKAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 SGQLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMSYLHVIEN 356
>gi|399028344|ref|ZP_10729604.1| DNA/RNA helicase, superfamily II [Flavobacterium sp. CF136]
gi|398074078|gb|EJL65234.1| DNA/RNA helicase, superfamily II [Flavobacterium sp. CF136]
Length = 444
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 125/262 (47%), Gaps = 26/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI++ L+ Q LV+DE D + + K+ SL +++ +T+ SA++
Sbjct: 132 GRLIDLIQRKAVDLKQTQYLVLDEADEMVSILKE--SLDEIITELPK--KHRTLLFSATL 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L Q + +VV + + + H +++ K L+ + S
Sbjct: 188 PGTIKQL----IQNYLNKNVVQISASMETVGNQGIDHEYIVVDPIEKLDVLMHFLNSKEG 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
E GIIF K+K A N + L ++ F S + GS ++ R + +
Sbjct: 244 ERGIIFC-----KTKAAVNKLAKNLAINRFSSGALHGS---------LSQGIRDRIMEQF 289
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R+G +L++TD+AARGID+ E +++ N+ LP + Y+HR+GRT R + K ++
Sbjct: 290 REGHINILIATDLAARGIDVKEISYVVNYHLPDTYETYVHRSGRTAR---AGAKGLSLTV 346
Query: 241 ITSEELFVLQRYENELKFKSEE 262
+ EE+ + +E EL K E
Sbjct: 347 LQEEEIIEIPDFERELGLKFTE 368
>gi|402574642|ref|YP_006623985.1| DNA/RNA helicase [Desulfosporosinus meridiei DSM 13257]
gi|402255839|gb|AFQ46114.1| DNA/RNA helicase, superfamily II [Desulfosporosinus meridiei DSM
13257]
Length = 500
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 127/260 (48%), Gaps = 28/260 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + +L ++++V+DE D + N + ++ +L RQT+ SA++
Sbjct: 129 GRLMDHMRRKTIRLHDIKIVVLDEADEMLNMGF-LEDIETILKEVP--EERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + N Q+ + ++ + + S + +V +++K+ L ++ +P
Sbjct: 186 P---RQIQNIAQRFMKEPQLISIKATGVTV--SDIEQHYVEVTERLKFDVLSRILDIQSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSN--SYKGSSDVLLLEEEMNFNSRAASLLE 179
+ I+F T VD LS S +G S + ++ + R + L +
Sbjct: 241 DLSIVFA--------------RTKRRVDELSEALSKRGYS-AEGIHGDLTQSKRDSVLRQ 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH++NFD+P+ Y+HR GRTGR + + +
Sbjct: 286 FKDGTIEVLVATDVAARGLDISGVTHVFNFDIPQDPESYVHRVGRTGR---AGKSGLAIT 342
Query: 240 IITSEELFVLQRYENELKFK 259
++T E+ +L+ E+ +K +
Sbjct: 343 LVTPREIGMLRLIESVIKRR 362
>gi|366989727|ref|XP_003674631.1| hypothetical protein NCAS_0B01730 [Naumovozyma castellii CBS 4309]
gi|342300495|emb|CCC68257.1| hypothetical protein NCAS_0B01730 [Naumovozyma castellii CBS 4309]
Length = 618
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L LI++ L +V+ LV+DE D + + Q+ ++ + A + RQT+ SA
Sbjct: 288 GRLSDLIDRGKISLSNVKYLVLDEADRMLDMGFEPQIRAIVEG-ADMTPVGERQTLMFSA 346
Query: 60 SIP---QH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLS 114
+ P QH R FL +D + + V + + R + + K LL
Sbjct: 347 TFPADIQHLARDFL----------ADYIFLSVGRVGSTSENITQRVLYVENQDKKSALLD 396
Query: 115 LIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
L+ + +IFV E + A ++ DF + + G ++E R
Sbjct: 397 LLSASNDGLTLIFV----ETKRMADQLTDFLIMQDFRATAIHGDR----TQQE-----RE 443
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L R G LLV+T +AARG+D+P TH+ N+DLP DY+HR GRTGR
Sbjct: 444 RALAAFRSGRANLLVATAVAARGLDIPNVTHVINYDLPGDIDDYVHRIGRTGR 496
>gi|409437511|ref|ZP_11264625.1| RNA helicase [Rhizobium mesoamericanum STM3625]
gi|408750939|emb|CCM75783.1| RNA helicase [Rhizobium mesoamericanum STM3625]
Length = 483
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 28/243 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ + V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 120 GRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPF-----TRQTLFFSA 174
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKMKYQTLL-SLIQ 117
++P + L + Q + +V A + RFV GK + + +L L++
Sbjct: 175 TMPPEIQKLADRFLQNPERIEVAKPASTA-----KTVTQRFVASHGKDYEKRAVLRDLVK 229
Query: 118 SDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
S ++ IIF + + S D + + L +M+ SR
Sbjct: 230 SQTDLKNAIIFCNRKKDVS-------------DLFRSLDRHGFSAGALHGDMDQRSRMTM 276
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR S +T
Sbjct: 277 LQNFKDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFT 336
Query: 237 VTS 239
+ +
Sbjct: 337 IVT 339
>gi|416015105|ref|ZP_11562765.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. B076]
gi|416028719|ref|ZP_11571636.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422404416|ref|ZP_16481469.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. race 4]
gi|320325391|gb|EFW81456.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. B076]
gi|320327468|gb|EFW83481.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330877269|gb|EGH11418.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 445
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 31/232 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNR-QTVFAS 58
G L + + L+ V+VLV+DE D + + S+ V L C R QT+ S
Sbjct: 130 GRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERL------AGECAGREQTMLFS 183
Query: 59 ASIPQH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSL 115
A+ R + ++ D H+ VN++ L S H+ + + K Q L L
Sbjct: 184 ATTGGAGLREMIGKVLK------DPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWL 237
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ ++ + IIF ++ + G ++ YK +L + R A
Sbjct: 238 LANETYQKAIIFTNTKAMADRLYGR---------LVALEYK----AFVLHGDKYQKDRKA 284
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++ ++QGG ++V+TD+AARG+D+ + NFD+PRS DY+HR GRTGR
Sbjct: 285 AIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGR 336
>gi|366047565|dbj|BAL43033.1| ATP-dependent RNA helicase DDX4 [Oreochromis niloticus]
Length = 644
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 22/229 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L V+ LV+DE D + + + +++L+AS S NRQT+ SA
Sbjct: 342 GRLLDMIGRGKVGLTKVRYLVLDEADRMLDMGFE-PDMRRLVASPGMPSKENRQTLMFSA 400
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + K+D + + V + S + FV K K L+ L++S
Sbjct: 401 TFPEDIQRL----AADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKFAKRDQLIDLLKST 456
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
E ++FV ++K+ + +T L + F + S G + E+ +L
Sbjct: 457 GSERTMVFV-----ETKRQADFIATILCQEKFPTTSIHGDREQWQREQ---------ALG 502
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ R G +LV+T + ARG+D+P+ + NFDLP + +Y+HR GRTGR
Sbjct: 503 DFRSGKCSVLVATSVGARGLDIPDVQFVVNFDLPNNIDEYVHRIGRTGR 551
>gi|402297853|ref|ZP_10817596.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
gi|401726922|gb|EJT00129.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
Length = 509
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + +L V+ +++DE D + N + ++ +L N RQT+ SA++
Sbjct: 129 GRLMDHMNRKTIRLNQVETVILDEADEMLNMGF-IEDIETILKEIP--NERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + QQ + + V + + ++ +K K+ L L+ P
Sbjct: 186 PKR---IEKLAQQFMKEPQTIAVKAKEV--TMENIEQFYIELHEKQKFDALCRLVDIHTP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F ++K+ + S L+ Y+ + ++N R + L + +
Sbjct: 241 ELAIVF-----GRTKRRVDELSEALI----KRGYRAEG----IHGDLNQAKRDSVLRKFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
G +LV+TD+AARG+D+ TH+YNFDLP+ Y+HR GRTGR
Sbjct: 288 NGLIEILVATDVAARGLDISGVTHVYNFDLPQDPESYVHRIGRTGR 333
>gi|339640657|ref|ZP_08662101.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 056 str. F0418]
gi|339453926|gb|EGP66541.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 056 str. F0418]
Length = 517
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL V+ L++DE D + N + L+ + + S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHVETLILDEADEMLN----MGFLEDIESIISRVPEERQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ + + HV + A + + ++ + K+ T+ L+
Sbjct: 184 MP-------DAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
D P+ I+F ++K+ + + L + F + G +++ R L
Sbjct: 237 DQPDLSIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 283 RDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT- 341
Query: 238 TSIITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 --FVAPNEMGYLQIIEN 356
>gi|91792106|ref|YP_561757.1| ATP-dependent RNA helicase SrmB [Shewanella denitrificans OS217]
gi|91714108|gb|ABE54034.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 411
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 126/255 (49%), Gaps = 26/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLA-SYSSCNNRQTVFASAS 60
G L + ++K+ F V+++VIDE D + + SS+ K +A C + A+
Sbjct: 132 GRLMEYLDKNKFDATEVEIMVIDEADRMLDMG--FSSVVKTIAIEAQGCKQKMLFSATLE 189
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSLIQSD 119
+RF + D V V V A + + +H + + K+ L +L++ +
Sbjct: 190 GGGVQRFARELL------DDPVTVDVEAPRSEKAKIHQWIHLADDQTHKFALLCNLLRQE 243
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
+ + I+FV K+++ + LL + +S ++ + +M R +L
Sbjct: 244 SVKRTIVFV-----KTREVVASLEGLLLKEGISCAF--------MRGDMEQKKRFQALGR 290
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+G +L++TD+AARGID+ + TH+ N+D+PRSA Y+HR GRTGR + K T S
Sbjct: 291 FTKGEVDILLATDVAARGIDIDDITHVINYDMPRSADAYVHRIGRTGR---AGAKGTAIS 347
Query: 240 IITSEELFVLQRYEN 254
++ + ++ ++ + E
Sbjct: 348 LVEAHDMRIVSKIER 362
>gi|291165171|gb|ADD81190.1| vasa [Scomber australasicus]
Length = 645
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 113/228 (49%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + + ++ LV+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 344 GRLLDMIGRGKVGVSKLRYLVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 402
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + + + K+D + + V + S + F+ K K + LL L+++
Sbjct: 403 TYPEDIQRMA----ADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTT 458
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV E ++A + FL ++ + E+ R +L +
Sbjct: 459 GMERTMVFV----ETKRQA------DFIATFLCQEKVPTTSIHGDREQ---REREQALAD 505
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G ++V+T +AARG+D+P+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 506 FRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGR 553
>gi|14211584|dbj|BAB56110.1| vasa short form [Oreochromis niloticus]
Length = 621
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 22/229 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L V+ LV+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 319 GRLLDMIGRGKVGLTKVRYLVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 377
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + K+D + + V + S + FV K K + L+ L++S
Sbjct: 378 TFPEDIQRL----AADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKFAKREQLIDLLKST 433
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
E ++FV ++K+ + +T L + F + S G + E+ +L
Sbjct: 434 GSERTMVFV-----ETKRQADFIATILCQEKFPTTSIHGDREQWQREQ---------ALG 479
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ R G +LV+T + ARG+D+P+ + NFDLP + +Y+HR GRTGR
Sbjct: 480 DFRSGKCSVLVATSVGARGLDIPDVQFVVNFDLPNNIDEYVHRIGRTGR 528
>gi|21465183|gb|AAM54703.1| vasa-like [Sparus aurata]
Length = 395
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 112/228 (49%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L ++ V+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 96 GRLLDMIGRGKIGLTKLRYFVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 154
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P + + + K+D + + V + S + FV K K + LL L+++
Sbjct: 155 TYPDDIQRMA----ADFLKTDYLFLAVGVVGAACSDVEQTFVQVTKFSKREQLLDLLKTT 210
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV ++K+ + +T L + + + + + R +L +
Sbjct: 211 GTERTMVFV-----ETKRQADFIATYLCQEKVPTTS--------IHGDREQREREQALAD 257
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G ++V+T +AARG+D+P+ H+ NFDLP+ +Y+HR GRTGR
Sbjct: 258 FRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPKEIDEYVHRIGRTGR 305
>gi|404492159|ref|YP_006716265.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
gi|77544268|gb|ABA87830.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
Length = 432
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 126/266 (47%), Gaps = 27/266 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + L +++VLV+DE D +F+ +++++L + RQT+ SA++
Sbjct: 129 GRLIDHIGQKTIDLSNIEVLVLDEADQMFDMGF-FPAVRQILRHVPA--QRQTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + T V V P + H + + + K LL L+ +
Sbjct: 186 PAAIRRLSGEVLTSPMT------VQVGNTTPAETVSHALYPVA-QHQKTAMLLELLSAVD 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
S ++F ++K+ G + Y+ +S L+ ++ R +L
Sbjct: 239 SRSVLVFT-RTKHRAKRLG--------LQLGKAGYQATS----LQGNLSQARRQEALTGF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R G +LV+TDIAARGID+ + +H+ N+D+P +A Y+HR GRTGR E +T +
Sbjct: 286 RDGKYEILVATDIAARGIDVSQVSHVINYDIPDTAEAYVHRIGRTGRASRKGEAFT---L 342
Query: 241 ITSEELFVLQRYENELKFKSEELTLQ 266
+T E+ +++ E L E T++
Sbjct: 343 VTGEDNAMVRAIEKVLDASLERRTIE 368
>gi|260102329|ref|ZP_05752566.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
helveticus DSM 20075]
gi|417013569|ref|ZP_11946654.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus MTCC
5463]
gi|260083862|gb|EEW67982.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
helveticus DSM 20075]
gi|328463453|gb|EGF35104.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus MTCC
5463]
Length = 503
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 124/267 (46%), Gaps = 26/267 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ L+ V +V+DE D + + + ++ +L +C +QT+ SA++
Sbjct: 133 GRLLDHLKRGTIDLDKVNTVVLDEADEMLDMG-FIKDIESILKYAKNC--KQTLLFSATM 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L I +K+ K + V + A + + FV + K+ + LI P
Sbjct: 190 P--KPILR--IGEKFMKDPAI-VQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGP 244
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
+ ++F T VD L+ + + + +++ R A L
Sbjct: 245 DLALVF--------------GRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRF 290
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R+G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + +
Sbjct: 291 REGKLDILVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGR---AGQNGVSVTF 347
Query: 241 ITSEELFVLQRYENELKFKSEELTLQT 267
+T E+ ++ E K K ++L T
Sbjct: 348 VTPNEIGYMRTIEQLTKKKMSPISLPT 374
>gi|144901078|emb|CAM77942.1| ATP-dependent RNA helicase [Magnetospirillum gryphiswaldense MSR-1]
Length = 570
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 115/246 (46%), Gaps = 37/246 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVD------FLFNSSKQVSSLKKLLASYSSCNNRQTV 55
G L + ++ L V+VLVIDE D F+ + + VS L K+ RQT+
Sbjct: 138 GRLLDMFDRGRILLNDVKVLVIDEADRMLDMGFIPDVQRIVSMLPKM---------RQTL 188
Query: 56 FASASI-PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLS 114
F SA++ P+ R+ + + V+A + + K +TL
Sbjct: 189 FFSATLGPEIRKLADEFLMNPK------EISVSAQSSTAVTVEQFLAVVDHIDKRETLRH 242
Query: 115 LIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSR 173
+I+ + ++ IF + + VD L S K DV+ + +M+ +R
Sbjct: 243 IIRIENLKNAFIFCNRKRD--------------VDILFKSLKKHGFDVVQMHGDMSQPAR 288
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
SL + + G LLV +D+ ARGID+ +H++NFD+P A DY+HR GRTGR + +
Sbjct: 289 LESLAKFKSGEARLLVCSDVVARGIDIKAVSHVFNFDVPIHAEDYVHRIGRTGRAGETGK 348
Query: 234 KWTVTS 239
+T+ S
Sbjct: 349 AFTIAS 354
>gi|262376303|ref|ZP_06069533.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145]
gi|262308904|gb|EEY90037.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145]
Length = 383
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 124/271 (45%), Gaps = 28/271 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +E+ L+ ++ LVIDE D L + + S+K+++ RQT+ SA+
Sbjct: 138 GRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGF-IPSVKRIVRFSPRKEQRQTLMFSAT- 195
Query: 62 PQHRRFLHNCIQ--QKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
F ++ + Q+W + V V + K + + R + K KY+ L +++ +
Sbjct: 196 -----FSYDVLNLAQQWL-FEPVTVEIEPEKKTNADVEQRVYMVAKADKYKLLQEILRDE 249
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRAASLL 178
E +IF + + K L D L + YK V++L E+ + R L
Sbjct: 250 PIEKVMIFANRRDQVRK----------LYDHLKRDGYK----VVMLSGEIAQDKRLKMLD 295
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G ++++TD+A RGI + +H+ NF LP + DY+HR GRTGR S
Sbjct: 296 QFKNGKHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTS---GVSI 352
Query: 239 SIITSEELFVLQRYENELKFKSEELTLQTQC 269
S + ++ F L E + K L+ C
Sbjct: 353 SFLAEDDAFYLPEIEKAIGQKLPLTRLEGYC 383
>gi|221133360|ref|ZP_03559665.1| ATP-dependent RNA helicase SrmB [Glaciecola sp. HTCC2999]
Length = 422
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 122/257 (47%), Gaps = 25/257 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVF-ASAS 60
G L + IEK F ++V+++DE D + + S+ +AS + + +F A+
Sbjct: 131 GRLFEHIEKESFDCRDIEVMILDEADRMLDMG--FRSIVNQIASEARWRKQSMLFSATLE 188
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P +F + + + + V+ + + +H + + LL I S+
Sbjct: 189 GPGIAQFSKDLLVNPES------ITVDPSRKEKAKIHQWYHLADDASHKYQLLKHILSEQ 242
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
ES I+FV + + L D L++ DV L+ EM + R ++
Sbjct: 243 AESAIVFVKTRERLQQ----------LKDRLASD---DIDVCWLQGEMPQDKRNQAMSRF 289
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G +L++TD+AARGID+ + +H+ NFD+PR++ YLHR GRTGR + K T SI
Sbjct: 290 KNGEVKILLATDVAARGIDVDDISHVINFDMPRTSDVYLHRIGRTGR---AGAKGTAISI 346
Query: 241 ITSEELFVLQRYENELK 257
+ + + +L R +K
Sbjct: 347 VEAHDFAMLGRIARYIK 363
>gi|19387225|gb|AAL87143.1|AF479824_1 DEAD box RNA helicase Vasa [Melanotaenia fluviatilis]
Length = 400
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 115/237 (48%), Gaps = 38/237 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L LI + L ++ LV+DE D + + +++L+ S S NRQT+ SA
Sbjct: 96 GRLLDLIGRGKIGLSKLRYLVLDEADRMLDMGF-APDMRRLVGSPGMPSKENRQTLMFSA 154
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P + + + K+D + + V + + + F+ K K + LL L+++
Sbjct: 155 TYPDDIQRM----AADFMKADYLFLAVGIVGGACTDVEQTFIQVTKFSKREQLLELLKTT 210
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS------- 172
E ++FV E ++A DF++ V L +E+++ S
Sbjct: 211 GMERTMVFV----ETKRQA----------DFIA--------VFLCQEKVSTTSIHGDREQ 248
Query: 173 --RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R +L + R G +LV+T +AARG+D+P+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 249 REREQALGDFRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGR 305
>gi|346540280|gb|AEO36953.1| vasa [Oreochromis aureus]
Length = 645
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 22/229 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L V+ LV+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 343 GRLLDMIGRGKVGLTKVRYLVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 401
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + K+D + + V + S + FV K K + LL L++S
Sbjct: 402 TFPEDIQRL----AADFLKTDYLFLAVGILGGACSDVEQTFVQVTKFAKREQLLDLLKST 457
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
E ++FV ++K+ + +T L + F + S G + R +L
Sbjct: 458 WSERTMVFV-----ETKRQADFIATILCQEKFPTTSIHGDREQW---------QRKQALG 503
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ R G +LV+T + ARG+D+P+ ++ NFDLP + +Y+HR GRTGR
Sbjct: 504 DFRSGKCSVLVATSVGARGLDIPDVQYVVNFDLPNNIHEYVHRIGRTGR 552
>gi|431792618|ref|YP_007219523.1| DNA/RNA helicase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430782844|gb|AGA68127.1| DNA/RNA helicase, superfamily II [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 500
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 113/227 (49%), Gaps = 23/227 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + +L+++ ++++DE D + N V ++ +L RQT+ SA++
Sbjct: 129 GRLMDHMRRRTIRLQNINMVILDEADEMLNMGF-VEDIETILQEIPEA--RQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + N Q+ +++ + + + + ++ +KMK+ L L+ +P
Sbjct: 186 P---RQIQNLAQKFMKDPELISIKGKEVTV--ANIEQDYLEVPEKMKFDVLCRLLDIQSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRAASLLEV 180
+ I+F +S VD LS + K + +++ + R + + +
Sbjct: 241 DLAIVFGRTKSR--------------VDELSEALNKRGYSAEGIHGDLSQSKRDSVMRQF 286
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR
Sbjct: 287 KEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
>gi|223984537|ref|ZP_03634669.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
12042]
gi|223963523|gb|EEF67903.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
12042]
Length = 556
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 120/260 (46%), Gaps = 28/260 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + I + + + +VLV+DE D + N + + ++ + L RQTV SA
Sbjct: 130 GRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALP-----QQRQTVLFSA 184
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P+ + + Q +N K + + +C K+ K + L+ LI
Sbjct: 185 TMPKPILEITSQYQTNPVHIKTPQTQINTPK-----IEQVYYVCPKEAKKEILMQLISMQ 239
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
P +IF +KK + L D +S Y ++ L +M R +
Sbjct: 240 NPHLAMIFCN-----TKKMVDE----LTSDLVSKGYPAAA----LHGDMKQEMRTGVMDN 286
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARGID+ ++N+DLP+ + Y+HR GRTGR + ++ +
Sbjct: 287 FKKGKINILVATDVAARGIDVDSMDVVFNYDLPQESEYYVHRIGRTGR---AGKEGLAVT 343
Query: 240 IITSEELFVLQRYENELKFK 259
+IT+ + + L+ E + K
Sbjct: 344 LITARQKYALRDLERTTRSK 363
>gi|121602645|ref|YP_988916.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
bacilliformis KC583]
gi|421760718|ref|ZP_16197533.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
bacilliformis INS]
gi|120614822|gb|ABM45423.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
protein [Bartonella bacilliformis KC583]
gi|411174807|gb|EKS44837.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
bacilliformis INS]
Length = 462
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 117/249 (46%), Gaps = 39/249 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL + RQT+F SA
Sbjct: 136 GRLLDHFERGTLLLMGVEILVIDEADRMLDMGFIPDIERICKL-----TPFTRQTLFFSA 190
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++ +FLH+ + + TK + R V G K K L
Sbjct: 191 TMAPEIIKLTEQFLHSPVCVEITKESST----------ARTITQRLVKSGSKAWHKRAVL 240
Query: 113 LSLIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LI + E + I+F + + S + + K + V +L +M+
Sbjct: 241 RKLIHDENKELKNAIVFCNRKKDIS-------------ELFRSLVKYNFSVGVLHGDMDQ 287
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+SR +L + ++ LLV++D+AARG+D+P+ +H++N+D+P A DY+HR GRTGR
Sbjct: 288 HSRMNTLADFKENKLTLLVASDVAARGLDIPDVSHVFNYDVPTHAEDYIHRIGRTGRAKR 347
Query: 231 SDEKWTVTS 239
S + +T+ +
Sbjct: 348 SGKAFTIVT 356
>gi|424869804|ref|ZP_18293485.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R497]
gi|402935190|gb|EJX54460.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R497]
Length = 501
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL +VQ LV+DE D + N + ++K+++ + RQT+ SA++
Sbjct: 128 GRMLDHINRHTLKLGTVQTLVLDEADEMLNMG-FLEDIEKIISQVP--DQRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ K+ HV + A + + +V + K+ + L P
Sbjct: 185 PPAIK----NIGVKFMKNPH-HVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + Y+ + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYRAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 SGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMDYLHVIEN 356
>gi|417092627|ref|ZP_11957243.1| superfamily II DNA/RNA helicase [Streptococcus suis R61]
gi|353532306|gb|EHC01978.1| superfamily II DNA/RNA helicase [Streptococcus suis R61]
Length = 523
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 21/238 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI++ KL+ V+ L++DE D + N + ++ ++ + RQT+ SA++
Sbjct: 128 GRLLDLIKRKALKLDGVETLILDEADEMLNMG-FLDDIEAIIERVPAS--RQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + I K+ K + HV + A + + ++ + K+ T+ L+ D P
Sbjct: 185 PEPIK----RIGVKFMK-EPEHVKIAAKELTNVNVDQYYIRVKEHEKFDTMTRLMDVDQP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F ++ L F + G +++ N R + + +
Sbjct: 240 ELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRVIRDFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T S
Sbjct: 287 NDQIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVS 344
>gi|430747243|ref|YP_007206372.1| DNA/RNA helicase [Singulisphaera acidiphila DSM 18658]
gi|430018963|gb|AGA30677.1| DNA/RNA helicase, superfamily II [Singulisphaera acidiphila DSM
18658]
Length = 466
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 37/235 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ +H +L+ VQV+V+DE D + + + +++ +L S RQT+ SA++
Sbjct: 142 GRLMDLMARHAIRLDKVQVVVLDEADQMLDIGFR-PAVETILKSVP--KTRQTLLLSATM 198
Query: 62 PQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P R +L N + + + D + AI+ L +++ + K++ L+ L+
Sbjct: 199 PPEVRDLAQTYLVNPVDVRLIREDE-DATIPAIRQL-------YLMVAAERKFELLIKLL 250
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFN----S 172
+ +A I+F ++K+ + V L S LL + M+ N
Sbjct: 251 RREAAPRAIVFC-----RTKRGADR------VGMLLRSEG------LLADTMHGNLSQAQ 293
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R L R G +LV+TD+ RGID+ +H+ NFDLP Y+HR GRTGR
Sbjct: 294 RNRVLQGFRSGRLTILVATDVVGRGIDVRGVSHVINFDLPEDPTHYVHRIGRTGR 348
>gi|311771467|dbj|BAJ25759.1| vasa [Pagrus major]
Length = 631
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 114/228 (50%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L ++ LV+DE D + + + ++++L+ S S NRQT+ SA
Sbjct: 332 GRLMDVIGRGKVGLSKLRYLVLDEADRMLDMGFE-PAMRRLVGSPGMPSKENRQTLMFSA 390
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P + + + K+D + + V + + + FV K K + LL L+++
Sbjct: 391 TYPDDIQRMG----ADFLKTDYLFLAVGVVGAACNDVEQTFVQVTKFSKREQLLDLLKTT 446
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV ++K+ + +T L + + + + + R +L +
Sbjct: 447 GTERTMVFV-----ETKRQADFIATYLCQEKVPTTS--------IHGDREQRERELALAD 493
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G ++V+T +AARG+D+P+ H+ NFDLP+ +Y+HR GRTGR
Sbjct: 494 FRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPKDIDEYVHRIGRTGR 541
>gi|431208676|ref|ZP_19500889.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
gi|430570682|gb|ELB09622.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
Length = 503
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL +VQ LV+DE D + N + ++K+++ + RQT+ SA++
Sbjct: 128 GRMLDHINRHTLKLGTVQTLVLDEADEMLNMG-FLEDIEKIISQVP--DQRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ K+ HV + A + + +V + K+ + L P
Sbjct: 185 PPAIK----NIGVKFMKNPH-HVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + Y+ + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYRAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 SGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMDYLHVIEN 356
>gi|354559094|ref|ZP_08978346.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353544264|gb|EHC13719.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 414
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 122/259 (47%), Gaps = 28/259 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + +LI+K ++++ +V+DE D L + + V+++ K ++ +RQ + SA
Sbjct: 134 GRILELIQKKKISSQNLRTIVLDEADRLLDEKNWQTVNAVIK-----TTLKDRQLLLFSA 188
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++ + + + V+ V A + S + H++ C ++ K++ L L++
Sbjct: 189 TLSSETLERTSSL---LKEPAVLRVTEQA--AVASTISHQYFACEQRDKFEVLRKLVRHL 243
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
P +IF+ + E K L LS S + R ++ +
Sbjct: 244 EPPRALIFINKSEEIEKTVEKLKFHGLDAQALSGSSQK-------------GDRRKAMED 290
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R G +LLV++D+AARG+D+ THI+N D+P YLHR GRTGR + + S
Sbjct: 291 FRTGKVHLLVASDLAARGLDIKNITHIFNLDIPEDPQLYLHRVGRTGR---AGQSGIAIS 347
Query: 240 IITSEELFVLQRYENELKF 258
+ + +E+ L + EN K
Sbjct: 348 LASEKEVHFLHKVENAFKI 366
>gi|389816323|ref|ZP_10207486.1| ATP-dependent RNA helicase [Planococcus antarcticus DSM 14505]
gi|388465316|gb|EIM07635.1| ATP-dependent RNA helicase [Planococcus antarcticus DSM 14505]
Length = 481
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 125/263 (47%), Gaps = 34/263 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + IE+ LE ++ LV+DE D + N +QV ++ L R T+ SA
Sbjct: 131 GRVFDHIERGTLNLEQIEYLVLDEADEMLNMGFVEQVEAIINKLPK-----QRTTMLFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P++ L QK D H+ + + + L + + H + ++ K+ L + +
Sbjct: 186 TLPENVEKL-----QKKYMIDPQHIEIASAENLTAQIDHSLFVVAEQKKFALLRDVTIIE 240
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVL---LLEEEMNFNSRAAS 176
P+S IIF + + +++ L Y + D L +L+E+ R A
Sbjct: 241 NPDSCIIFCRTKD----------NVDFVMEQLEKHYY-TCDKLHGGMLQED-----RTAV 284
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
+ + ++G LV+TD+A+RGID+ +H+ N+DLP Y+HRAGRTGR + +
Sbjct: 285 MNDFKRGEFRYLVATDVASRGIDIDSISHVINYDLPMEKESYVHRAGRTGR---AGKTGK 341
Query: 237 VTSIITSEELFVLQRYENELKFK 259
S +T E L E+ + F+
Sbjct: 342 AISFVTPNEDKFLAEIEDYIGFE 364
>gi|358009896|ref|ZP_09141706.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. P8-3-8]
Length = 383
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 125/271 (46%), Gaps = 28/271 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L E+ L+ ++ LVIDE D L + + S+K+++ RQT+ SA+
Sbjct: 138 GRLIDFTEQKEVWLDQIEFLVIDEADRLLDMGF-IPSVKRIVRFSPRKEQRQTLMFSAT- 195
Query: 62 PQHRRFLHNCIQ--QKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
F ++ + Q+W + V V + K + + R + KK KY+ L ++ +
Sbjct: 196 -----FSYDVLNLAQQWL-FEPVTVEIEPEKKTNADVEQRVYVVEKKDKYKLLRQILADE 249
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFL-SNSYKGSSDVLLLEEEMNFNSRAASLL 178
E +IF + + K L D L ++ YK V++L E+ + R L
Sbjct: 250 PIEKVMIFANRRDQVRK----------LYDHLKADGYK----VVMLSGEIAQDKRLKMLD 295
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G ++++TD+A RGI + +H+ NF LP + DY+HR GRTGR + +
Sbjct: 296 QFKNGQHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGR---AGTQGVSI 352
Query: 239 SIITSEELFVLQRYENELKFKSEELTLQTQC 269
S ++ ++ F L E + K L C
Sbjct: 353 SFLSEDDAFYLPEIEKAIGQKLPLTRLDGYC 383
>gi|385813078|ref|YP_005849471.1| DEAD/DEAH box helicase [Lactobacillus helveticus H10]
gi|323465797|gb|ADX69484.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus helveticus
H10]
Length = 499
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 123/267 (46%), Gaps = 26/267 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ L+ V +V+DE D + + + ++ +L +C +QT+ SA++
Sbjct: 129 GRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGF-IQDIESILKYVKNC--KQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L I +K+ K + V + A + + FV + K+ + LI P
Sbjct: 186 P--KPILR--IGEKFMKDPAI-VQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
+ ++F T VD L+ + + + +++ R A L
Sbjct: 241 DLALVF--------------GRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRF 286
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R+G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + +
Sbjct: 287 REGKLDILVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGR---AGQNGVSVTF 343
Query: 241 ITSEELFVLQRYENELKFKSEELTLQT 267
+T E+ ++ E K K L L T
Sbjct: 344 VTPNEIGYMRTIEQLTKKKMSPLRLPT 370
>gi|402238461|gb|AFQ38974.1| vasa [Scophthalmus maximus]
Length = 631
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 30/232 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L+ V+ V+DE D + + + +++++ S S NRQT+ SA
Sbjct: 335 GRLLDMIGRGKVGLQKVRYFVLDEADRMLDMGFE-PDMRRVVGSPGMPSKENRQTLMFSA 393
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + + + K+D + + V + S + FV K K + LL L+++
Sbjct: 394 TYPEDIQRM----AADFLKTDYLFLAVGVVGGACSDVEQTFVEVTKFSKKEQLLDLLKTT 449
Query: 120 APESGIIFVGEQSEKSKKAG-----NAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
E ++FV + + A N PST++ D R
Sbjct: 450 GTERTMVFVETKRQADFIATLMCQENVPSTSIHGD------------------REQRERE 491
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTG 226
+L++ R G +L++T +AARG+D+P+ H+ NFDLP + +Y+HR GRTG
Sbjct: 492 LALMDFRSGKCPVLIATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTG 543
>gi|345021499|ref|ZP_08785112.1| DEAD/DEAH box helicase domain-containing protein [Ornithinibacillus
scapharcae TW25]
Length = 433
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVD--FLFNSSKQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + +L +VQ+LVIDE D L +V + + + ++RQT+ SA
Sbjct: 130 GRLLDHIRRGTIELSTVQMLVIDEADQMLLMGFLPEVDDI-----IHETLSSRQTMLFSA 184
Query: 60 SIPQHRRFLHN--CIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQ 117
++P R L ++ ++ + V V+ IK + + + K TLL+LIQ
Sbjct: 185 TMPNEIRSLAKKYMVEPEFIEVKAERVTVDEIKQV-------VIETTDRRKQATLLNLIQ 237
Query: 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
P IIF + ++KK A +++ Y+ L ++ + R ++
Sbjct: 238 EHRPFLAIIFCRTKV-RAKKLHEA--------LIASGYESDE----LHGDLTQSKREKAM 284
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R+ LV+T++AARG+D+ TH+YN+D+P Y+HR GRTGR
Sbjct: 285 KRFREAKTQFLVATEVAARGLDVEGVTHVYNYDIPHDVESYVHRIGRTGR 334
>gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933]
gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502]
gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410]
gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|383327538|ref|YP_005353422.1| DEAD/DEAH box helicase [Enterococcus faecium Aus0004]
gi|389867363|ref|YP_006374786.1| DEAD/DEAH box helicase [Enterococcus faecium DO]
gi|415892439|ref|ZP_11549927.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|416131873|ref|ZP_11597781.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|424795449|ref|ZP_18221304.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
S447]
gi|424819380|ref|ZP_18244487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R501]
gi|424856321|ref|ZP_18280560.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R499]
gi|424949231|ref|ZP_18364921.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R496]
gi|424956289|ref|ZP_18371077.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R446]
gi|424967919|ref|ZP_18381589.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1140]
gi|424976047|ref|ZP_18389165.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1137]
gi|424981969|ref|ZP_18394659.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV99]
gi|424984734|ref|ZP_18397253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV69]
gi|424987723|ref|ZP_18400084.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV38]
gi|424990961|ref|ZP_18403147.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV26]
gi|424995504|ref|ZP_18407380.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|424997413|ref|ZP_18409175.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|425000503|ref|ZP_18412062.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|425003235|ref|ZP_18414612.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|425006604|ref|ZP_18417774.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV1]
gi|425011167|ref|ZP_18422079.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E422]
gi|425013771|ref|ZP_18424487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E417]
gi|425017560|ref|ZP_18428061.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C621]
gi|425022464|ref|ZP_18432645.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C497]
gi|425030171|ref|ZP_18435374.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C1904]
gi|425033448|ref|ZP_18438416.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|425034930|ref|ZP_18439786.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|425040930|ref|ZP_18445364.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|425044373|ref|ZP_18448536.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|425047569|ref|ZP_18451517.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|425053412|ref|ZP_18456957.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|430831942|ref|ZP_19449990.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430847435|ref|ZP_19465272.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430855628|ref|ZP_19473336.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|431544298|ref|ZP_19518594.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|431749300|ref|ZP_19538042.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|431755816|ref|ZP_19544461.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|431767952|ref|ZP_19556395.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|431769544|ref|ZP_19557952.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|431773402|ref|ZP_19561727.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|431776500|ref|ZP_19564761.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|431779582|ref|ZP_19567775.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|431782613|ref|ZP_19570746.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|431784440|ref|ZP_19572479.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933]
gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502]
gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410]
gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|364093335|gb|EHM35615.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|364093511|gb|EHM35776.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|378937232|gb|AFC62304.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium Aus0004]
gi|388532612|gb|AFK57804.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium DO]
gi|402924387|gb|EJX44599.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
S447]
gi|402926241|gb|EJX46293.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R501]
gi|402930201|gb|EJX49880.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R499]
gi|402934931|gb|EJX54225.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R496]
gi|402946393|gb|EJX64674.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R446]
gi|402952005|gb|EJX69866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1137]
gi|402953338|gb|EJX71063.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1140]
gi|402962168|gb|EJX79137.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV99]
gi|402967955|gb|EJX84466.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV69]
gi|402973745|gb|EJX89845.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV38]
gi|402977156|gb|EJX92995.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|402978215|gb|EJX93973.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV26]
gi|402986313|gb|EJY01444.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|402988977|gb|EJY03941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|402992431|gb|EJY07139.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|402996952|gb|EJY11308.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV1]
gi|402997720|gb|EJY12029.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E422]
gi|403000335|gb|EJY14462.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E417]
gi|403002697|gb|EJY16644.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C497]
gi|403004081|gb|EJY17911.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C621]
gi|403004113|gb|EJY17941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C1904]
gi|403009946|gb|EJY23359.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|403018997|gb|EJY31633.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|403027273|gb|EJY39167.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|403029941|gb|EJY41662.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|403030418|gb|EJY42102.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|403033364|gb|EJY44870.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|430480583|gb|ELA57757.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430537055|gb|ELA77408.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430546683|gb|ELA86626.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|430592410|gb|ELB30425.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|430611728|gb|ELB48804.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|430616431|gb|ELB53345.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|430630040|gb|ELB66417.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|430636649|gb|ELB72713.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|430636858|gb|ELB72912.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|430640819|gb|ELB76647.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|430641683|gb|ELB77478.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|430647250|gb|ELB82698.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|430649535|gb|ELB84911.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
Length = 503
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL +VQ LV+DE D + N + ++K+++ + RQT+ SA++
Sbjct: 128 GRMLDHINRHTLKLGTVQTLVLDEADEMLNMG-FLEDIEKIISQVP--DQRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ K+ HV + A + + +V + K+ + L P
Sbjct: 185 PPAIK----NIGVKFMKNPH-HVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + Y+ + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYRAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 SGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMDYLHVIEN 356
>gi|451940595|ref|YP_007461233.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
australis Aust/NH1]
gi|451899982|gb|AGF74445.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
australis Aust/NH1]
Length = 468
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 120/249 (48%), Gaps = 39/249 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKL--LASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + ++++ L ++ RQT+F SA
Sbjct: 136 GRLLDHFERGKLLLVGVEILVIDEADRMLDMG-FIPDIERICRLTPFT----RQTLFFSA 190
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++ +FLH+ + + TK V + R V G K K L
Sbjct: 191 TMAPEIAKLTEQFLHSPVYIEITKEFVT----------ARTITQRLVKSGSKPWDKRAIL 240
Query: 113 LSLI--QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LI + D ++ IIF + + S + + K + V L +M+
Sbjct: 241 RGLIHDEGDKLKNAIIFCNRKKDIS-------------ELFRSLVKYNFSVGALHGDMDQ 287
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
++R ++L + G LL+++D+AARG+D+P +HI+N+D+P A DY+HR GRTGR
Sbjct: 288 HTRTSTLANFKDGKITLLIASDVAARGLDIPAVSHIFNYDVPTHAEDYIHRIGRTGRAKR 347
Query: 231 SDEKWTVTS 239
S + +T+ +
Sbjct: 348 SGKAFTIVT 356
>gi|428770509|ref|YP_007162299.1| DEAD/DEAH box helicase [Cyanobacterium aponinum PCC 10605]
gi|428684788|gb|AFZ54255.1| DEAD/DEAH box helicase domain protein [Cyanobacterium aponinum PCC
10605]
Length = 491
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 121/228 (53%), Gaps = 24/228 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+ + L+S++ V+DE D + S + +K++L+ + +RQT+ SA++
Sbjct: 131 GRIIDLLNRKNLTLDSLRYAVLDEADEML-SMGFIDDVKEILSQ--TPKSRQTICFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHH-RFVICGKKMKYQTLLSLIQSDA 120
P+ ++L K +D ++ + PS + +++ K +T+ +++ +
Sbjct: 188 PKEIQYLV-----KEFMNDPINATGEKPQDTPSRIDQCVYMVPRGWSKIKTIQPILEIED 242
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRAASLLE 179
P+SGIIFV ++K+ + +T L S + Y G +++ + R +
Sbjct: 243 PQSGIIFV-----RTKRTASELTTKLQEAGQSVDEYHG---------DLSQSQRERLIQR 288
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G L+V+TDIAARG+D+ + TH++NFDLP + Y+HR GRTGR
Sbjct: 289 WRDGKIKLVVATDIAARGLDVSDLTHVFNFDLPDNTETYIHRIGRTGR 336
>gi|447911698|ref|YP_007393110.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
gi|445187407|gb|AGE29049.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
Length = 503
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL +VQ LV+DE D + N + ++K+++ + RQT+ SA++
Sbjct: 128 GRMLDHINRHTLKLGTVQTLVLDEADEMLNMG-FLEDIEKIISQVP--DQRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ K+ HV + A + + +V + K+ + L P
Sbjct: 185 PPAIK----NIGVKFMKNPH-HVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + Y+ + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYRAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 SGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMDYLHVIEN 356
>gi|440730386|ref|ZP_20910475.1| ATP-dependent RNA helicase, partial [Xanthomonas translucens
DAR61454]
gi|440378920|gb|ELQ15528.1| ATP-dependent RNA helicase, partial [Xanthomonas translucens
DAR61454]
Length = 439
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 119/261 (45%), Gaps = 33/261 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +E+ L +++LV+DE D + + + S+K++LA NRQT+ SA+
Sbjct: 135 GRLLDHLERRSVDLSGIEILVLDEADRMLDMGF-LPSIKRILAKLPK-QNRQTLLFSATF 192
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
+ R F+HN + + T S+ V + HR K + LL L+
Sbjct: 193 EEGIKQLAREFMHNPQEIQATPSNTVA----------DTITHRVHPVDGTRKRELLLHLL 242
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+D+ ++F ++ A T+ +D K + + R +
Sbjct: 243 AADSRMQTLVF-------ARTKHGADKLTMFLD------KSGLKTAAIHGNKSQGQRLRA 289
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + + G +LV+TDIAARGID+ + + N+DLP A DY+HR GRTGR E
Sbjct: 290 LSDFKAGRITVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGAQGE--- 346
Query: 237 VTSIITSEELFVLQRYENELK 257
S++ +E +L+ LK
Sbjct: 347 AVSLVAQDEAKLLRAISRMLK 367
>gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68]
gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6]
gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|406579294|ref|ZP_11054526.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|406581588|ref|ZP_11056725.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|406584027|ref|ZP_11059065.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|406589825|ref|ZP_11064245.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410938072|ref|ZP_11369930.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|424789110|ref|ZP_18215819.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
V689]
gi|424953765|ref|ZP_18368708.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R494]
gi|424962400|ref|ZP_18376756.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1986]
gi|424963599|ref|ZP_18377803.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1190]
gi|424970725|ref|ZP_18384213.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1139]
gi|424978089|ref|ZP_18391038.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1123]
gi|425038208|ref|ZP_18442830.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|425058609|ref|ZP_18461987.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|425060636|ref|ZP_18463922.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|427397059|ref|ZP_18889685.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430820898|ref|ZP_19439518.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430823396|ref|ZP_19441967.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430826317|ref|ZP_19444503.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430828899|ref|ZP_19447010.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430834757|ref|ZP_19452759.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430836494|ref|ZP_19454473.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430839412|ref|ZP_19457353.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430843175|ref|ZP_19461076.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430850821|ref|ZP_19468578.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430853175|ref|ZP_19470905.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430858894|ref|ZP_19476513.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430861435|ref|ZP_19478942.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430866428|ref|ZP_19481705.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430892938|ref|ZP_19484559.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430952632|ref|ZP_19486438.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|431000766|ref|ZP_19488247.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|431234137|ref|ZP_19502906.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|431256501|ref|ZP_19504856.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|431303424|ref|ZP_19508271.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|431380394|ref|ZP_19510775.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|431441111|ref|ZP_19513326.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|431506774|ref|ZP_19515600.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|431725207|ref|ZP_19525416.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|431744090|ref|ZP_19532962.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|431747114|ref|ZP_19535916.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|431760196|ref|ZP_19548798.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|431765027|ref|ZP_19553551.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68]
gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6]
gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|402922578|gb|EJX42943.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
V689]
gi|402938304|gb|EJX57320.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R494]
gi|402940682|gb|EJX59477.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1986]
gi|402948694|gb|EJX66809.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1190]
gi|402960765|gb|EJX77866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1139]
gi|402963120|gb|EJX80012.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1123]
gi|403019904|gb|EJY32478.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|403038013|gb|EJY49253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|403042418|gb|EJY53373.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|404455599|gb|EKA02443.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|404459354|gb|EKA05720.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|404464924|gb|EKA10437.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|404470265|gb|EKA14916.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410733711|gb|EKQ75634.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|425722385|gb|EKU85280.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430439035|gb|ELA49418.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430442109|gb|ELA52157.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430445197|gb|ELA54971.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430482561|gb|ELA59676.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430484826|gb|ELA61773.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430488294|gb|ELA64976.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430490870|gb|ELA67366.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430497924|gb|ELA73941.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430535180|gb|ELA75603.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430540997|gb|ELA81174.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430544740|gb|ELA84762.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430549900|gb|ELA89710.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430551656|gb|ELA91407.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430555404|gb|ELA94942.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430557231|gb|ELA96699.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|430562425|gb|ELB01657.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|430573163|gb|ELB11993.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|430577603|gb|ELB16190.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|430580065|gb|ELB18545.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|430582262|gb|ELB20689.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|430586467|gb|ELB24719.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|430587161|gb|ELB25394.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|430595854|gb|ELB33732.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|430605718|gb|ELB43100.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|430607222|gb|ELB44549.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|430624005|gb|ELB60656.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|430629510|gb|ELB65910.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
Length = 503
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL +VQ LV+DE D + N + ++K+++ + RQT+ SA++
Sbjct: 128 GRMLDHINRHTLKLGTVQTLVLDEADEMLNMG-FLEDIEKIISQVP--DQRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ K+ HV + A + + +V + K+ + L P
Sbjct: 185 PPAIK----NIGVKFMKNPH-HVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + Y+ + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYRAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 SGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMDYLHVIEN 356
>gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501]
gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501]
Length = 503
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL +VQ LV+DE D + N + ++K+++ + RQT+ SA++
Sbjct: 128 GRMLDHINRHTLKLGTVQTLVLDEADEMLNMG-FLEDIEKIISQVP--DQRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ K+ HV + A + + +V + K+ + L P
Sbjct: 185 PPAIK----NIGVKFMKNPH-HVKIKAKEVTADLIDQYYVRAKEYEKFDIMTRLFDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + Y+ + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYRAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 SGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMDYLHVIEN 356
>gi|423711385|ref|ZP_17685705.1| hypothetical protein MCQ_00432 [Bartonella washoensis Sb944nv]
gi|395415299|gb|EJF81734.1| hypothetical protein MCQ_00432 [Bartonella washoensis Sb944nv]
Length = 467
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 124/265 (46%), Gaps = 39/265 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL + RQT+F SA
Sbjct: 136 GRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKL-----TPFTRQTLFFSA 190
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++ ++FLH + + TK+ + + R V G K K L
Sbjct: 191 TMAPEITKLTKQFLHFPVSVEVTKASST----------ATTITQRLVKSGNKAWDKRAVL 240
Query: 113 LSLIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LI ++ E + IIF + + S+ L + +++ V L +M+
Sbjct: 241 RELIHNEGEELKNAIIFCNRKRDISE---------LFRSLVRHNFS----VGALHGDMDQ 287
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
SR +L + + LLV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 288 YSRMNTLADFKDNKLTLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANR 347
Query: 231 SDEKWTVTSIITSEELFVLQRYENE 255
S + +T+ + + + ++ NE
Sbjct: 348 SGKAFTIVTKADQKYISAIEEMSNE 372
>gi|395779999|ref|ZP_10460466.1| hypothetical protein MCW_00553 [Bartonella washoensis 085-0475]
gi|395419266|gb|EJF85566.1| hypothetical protein MCW_00553 [Bartonella washoensis 085-0475]
Length = 467
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 124/265 (46%), Gaps = 39/265 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL + RQT+F SA
Sbjct: 136 GRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKL-----TPFTRQTLFFSA 190
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++ ++FLH + + TK+ + + R V G K K L
Sbjct: 191 TMAPEITKLTKQFLHFPVSVEVTKASST----------ATTITQRLVKSGNKAWDKRAVL 240
Query: 113 LSLIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LI ++ E + IIF + + S+ L + +++ V L +M+
Sbjct: 241 RELIHNEGEELKNAIIFCNRKRDISE---------LFRSLVRHNFS----VGALHGDMDQ 287
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
SR +L + + LLV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 288 YSRMNTLADFKDNKLTLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANR 347
Query: 231 SDEKWTVTSIITSEELFVLQRYENE 255
S + +T+ + + + ++ NE
Sbjct: 348 SGKAFTIVTKADQKYISAIEEMSNE 372
>gi|352516353|ref|YP_004885670.1| putative RNA helicase [Tetragenococcus halophilus NBRC 12172]
gi|348600460|dbj|BAK93506.1| putative RNA helicase [Tetragenococcus halophilus NBRC 12172]
Length = 505
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 119/253 (47%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + KL +V+ LV+DE D + N + ++K++A RQT+ SA++
Sbjct: 128 GRMLDHINRRTLKLSTVETLVLDEADEMLNMG-FLEDIEKIIAQVPE--QRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + I K+ K D HV + A + + +V K+ + L P
Sbjct: 185 PKEIK----SIGVKFMK-DSHHVRIKAKEMTADSIDQYYVKAKDYEKFDIMTRLFDVQLP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E +IF ++K+ + + L + YK + +++ R L +
Sbjct: 240 ELTLIFA-----RTKRRVDEIARGLE----ARGYKAEG----IHGDLSQQKRMNILQSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 KGRLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKSGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMNYLHVIEN 356
>gi|402821009|ref|ZP_10870569.1| hypothetical protein IMCC14465_18030 [alpha proteobacterium
IMCC14465]
gi|402510241|gb|EJW20510.1| hypothetical protein IMCC14465_18030 [alpha proteobacterium
IMCC14465]
Length = 481
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 103/228 (45%), Gaps = 25/228 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L +E+ L V+VLVIDE D + + + + KLL RQT+F SA
Sbjct: 131 GRLLDHVERGGVLLRGVEVLVIDEADRMLDMGFIPDIERIVKLLPF-----TRQTLFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + +Q S V V + V K K +TL L +
Sbjct: 186 TMPPE---ITRLTEQFL--SAPARVEVAPPSSTNKNVSQLLVSVSKAQKLKTLKKLFDEE 240
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
+GIIF + + + D L+ K + L +M+ + R L
Sbjct: 241 DVTNGIIFCNRKRD-------------IGDLLNALQKSGYPAVSLHGDMDQHMRLKMLER 287
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ G L+++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 288 FKGGEATYLIASDVAARGLDIPAVSHVFNYDVPTHAEDYVHRIGRTGR 335
>gi|434399810|ref|YP_007133814.1| DEAD/DEAH box helicase domain protein [Stanieria cyanosphaera PCC
7437]
gi|428270907|gb|AFZ36848.1| DEAD/DEAH box helicase domain protein [Stanieria cyanosphaera PCC
7437]
Length = 485
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 136/262 (51%), Gaps = 27/262 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+E+ L+ V++ V+DE D + S + +KK+L S RQT SA++
Sbjct: 130 GRIIDLLERKELSLDQVRLAVLDESDEML-SMGFIDDVKKILQQAS--KQRQTACFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHR-FVICGKKMKYQTLLSLIQSDA 120
P R + + IQQ + KS ++ V V K P+ ++ + +++ K Q L +++ +
Sbjct: 187 P---REIKDLIQQ-FLKSPIM-VTVEQPKAAPARINQQAYMVPRGWHKNQALQPILEIEE 241
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRAASLLE 179
+S IIFV ++KK + ++ L S + Y G +++ R +
Sbjct: 242 IDSAIIFV-----RTKKTASELTSKLQEAGHSVDEYHG---------DLSQIQRERLVQR 287
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R G ++V+TDIAARG+D+ TH+ N+DLP +A Y+HR GRTGR + + T +
Sbjct: 288 FRDGKIKMIVATDIAARGLDVENLTHVINYDLPDNAETYIHRIGRTGR---AGKHGTAIA 344
Query: 240 IITSEELFVLQRYENELKFKSE 261
++ + L++ E+ L+ + E
Sbjct: 345 LVQPIDRRTLRQIEHRLRQRLE 366
>gi|13470594|ref|NP_102163.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
gi|14021336|dbj|BAB47949.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
Length = 467
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 113/226 (50%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ + L + LV+DE D + + ++ +K++ + ++ +RQT SA++
Sbjct: 142 GRLTDLVREGDLILSDTKWLVLDEGDRMLDMG-FINDVKRI--AKATAPDRQTALFSATM 198
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L + + + V + V+ + + V K K Q L +++ +A
Sbjct: 199 PDEIAELAKGLLK-----NPVRIEVSPQSTAAAEIVQGVVFARTKQKRQVLSTMLADEAM 253
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+S IIF ++K + + D + +K + ++ + N+R +L + R
Sbjct: 254 KSVIIF-----SRTKHGAD----RVTKDLERDGFKAA----VIHGNKSQNARQKALNDFR 300
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+G +LV+TDIAARGID+P +H+ NFDLP A Y+HR GRTGR
Sbjct: 301 EGSVRILVATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGR 346
>gi|340374345|ref|XP_003385698.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Amphimedon queenslandica]
Length = 588
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 24/230 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + L++ Q++++DE D L + ++ + +LA S ++Q + SA++
Sbjct: 184 GRLNDQINRGNLPLDNFQIVILDEADELLTPNFKIQ-IDDVLADTPS--DKQMLLFSATM 240
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSLIQSDA 120
P + + I+Q +S V+ + ++ + LP + H+ + + M K+ T+L LI +
Sbjct: 241 PPN---VKEVIRQYMKQSVVIDLTASSNR-LPPAIKHKVLRLDRGMDKFGTILDLINVYS 296
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRAASLLE 179
P+ I+F + + S L FLS N +S L +++ R L
Sbjct: 297 PQRAIVFTTTKIQASD----------LGSFLSRNGVSATS----LHGDLSQQMRETCLER 342
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAID-YLHRAGRTGRK 228
R G ++ +TD+AARGID+PE + + P S ID Y+HR+GRTGRK
Sbjct: 343 FRSGKIKIIAATDVAARGIDIPEIDFVLQIEPPPSGIDSYVHRSGRTGRK 392
>gi|284042564|ref|YP_003392904.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
gi|283946785|gb|ADB49529.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
14684]
Length = 481
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 33/233 (14%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+G + LI +H L + +V+DE D + + + ++K+LA + +RQT SA+
Sbjct: 128 VGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGF-LEDVEKILAL--TPGSRQTALFSAT 184
Query: 61 IPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSL 115
+P R+L+N VHV V A + + ++ K L ++
Sbjct: 185 MPPEIRKLSERYLYNP----------VHVKVRAATLTVDTVEQFSLEMSQRDKPDMLGTV 234
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRA 174
++S+ P+ I+FV T + D L + + +V L +M+ R
Sbjct: 235 LESEKPDQAIVFV--------------RTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRD 280
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L + G +LV+TD+AARG+D+ TH+ NFD+P S Y+HR GRTGR
Sbjct: 281 GVMLSFKSGRLPILVATDVAARGLDISSVTHVVNFDVPTSPDVYVHRIGRTGR 333
>gi|194743932|ref|XP_001954452.1| GF16725 [Drosophila ananassae]
gi|190627489|gb|EDV43013.1| GF16725 [Drosophila ananassae]
Length = 693
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 123/250 (49%), Gaps = 33/250 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L++ ++ + S+ LV+DE D + + + ++K+L +RQT+ SA+
Sbjct: 399 GRLNDLVQANVINVSSITYLVLDEADRMLDMGFE-PQIRKVLLDIRP--DRQTIMTSATW 455
Query: 62 PQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P R ++ N IQ D+ H ++K + L K+QT+ S +
Sbjct: 456 PPGVRRLAQSYMKNPIQVCVGSLDLAATH--SVKQVIELLQD------DAEKFQTIKSFV 507
Query: 117 QS-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
++ + I+F G ++ +A + S L F + G+ D + R
Sbjct: 508 KNMRKTDKIIVFCGRKA----RADDLSSDLTLDGFCTQCIHGNRDQ---------SDREQ 554
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
++ +++ G +LV+TD+A+RG+D+ + +H+ N+D PR+ +Y+HR GRTGR + K
Sbjct: 555 AIADIKSGAVRILVATDVASRGLDIEDISHVINYDFPRNIEEYVHRVGRTGR---AGRKG 611
Query: 236 TVTSIITSEE 245
T S +T E+
Sbjct: 612 TSISFVTRED 621
>gi|366047568|dbj|BAL43034.1| ATP-dependent RNA helicase DDX4 [Oreochromis niloticus]
Length = 646
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 22/229 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L V+ LV+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 344 GRLLDMIGRGKVGLTKVRYLVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 402
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + K+D + + V + S + FV K K + L+ L++S
Sbjct: 403 TFPEDIQRL----AADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKFAKREQLIDLLKST 458
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
E ++FV ++K+ + +T L + F + S G + E+ +L
Sbjct: 459 GSERTMVFV-----ETKRQADFIATILCQEKFPTTSIHGDREQWQREQ---------ALG 504
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ R G +LV+T + ARG+D+P+ + NFDLP + +Y+HR GRTGR
Sbjct: 505 DFRSGKCSVLVATSVGARGLDIPDVQFVVNFDLPNNIDEYVHRIGRTGR 553
>gi|307946857|ref|ZP_07662192.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
gi|307770521|gb|EFO29747.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
Length = 471
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 26/242 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L+ V+VLVIDE D + + + + KL+ RQT+F SA
Sbjct: 131 GRLLDHFERGKLLLQGVEVLVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 185
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P + L Q + +V + + H+ GK + + +L +
Sbjct: 186 TMPPEIQRLTETFLQNPARVEVARTSSTS----ENISHYLRAAEGKDYEKRAVLRELLEG 241
Query: 120 APE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
A + + I+F + + S TL + Y S L +M+ +R L
Sbjct: 242 AEDLNNAIVFCNRKRDIS---------TLFRSLERHGYSVGS----LHGDMDQRTRMTML 288
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
++G LL+++D+AARG+D+PE +H++N+D+P A DY+HR GRTGR + +T+
Sbjct: 289 DNFKKGTIKLLIASDVAARGLDIPEVSHVFNYDVPSHAEDYVHRIGRTGRAGRTGVAYTL 348
Query: 238 TS 239
S
Sbjct: 349 VS 350
>gi|422302445|ref|ZP_16389808.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9806]
gi|425454118|ref|ZP_18833865.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9807]
gi|389788317|emb|CCI16072.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9806]
gi|389805290|emb|CCI14994.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9807]
Length = 479
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 134/268 (50%), Gaps = 39/268 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+++ LES+ +V+DE D + S + +KK+L +S + RQT SA++
Sbjct: 130 GRVIDLLDRKKLHLESLNWVVLDEADEML-SMGFIDDVKKIL--QASPSTRQTACFSATM 186
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHR-FVICGKKMKYQTLLSLIQSD 119
P+ R + N ++ V V V+ + P+ + + ++I K + L L++ +
Sbjct: 187 PREIRDLIANFLKSP------VSVTVSQPQAAPAKIEQKIYLIPRGWTKLKVLQPLLEIE 240
Query: 120 APESGIIFV------GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
ES IIFV E + K ++AG VD Y G+ ++ R
Sbjct: 241 PLESAIIFVRTKQTAAELTSKLQEAGQT------VD----EYHGN---------LSQVQR 281
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ R+G L+V+TDIAARG+D+ +H+ N+DLP +A Y+HR GRTGR + +
Sbjct: 282 ERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGR---AGK 338
Query: 234 KWTVTSIITSEELFVLQRYENELKFKSE 261
T S++ + +L++ E L+ + E
Sbjct: 339 TGTAISLVEPIDRRLLRQIEQRLRQRLE 366
>gi|350559824|ref|ZP_08928664.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349782092|gb|EGZ36375.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 443
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 40/239 (16%)
Query: 1 MGSLCQLIEKH---IFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFA 57
+G+ ++I+ H +F L+ V+V+V+DE D +F+ + ++ LL S RQ++
Sbjct: 139 IGTPGRIIDYHKQRVFGLKRVEVVVLDEADRMFDLGF-IKDIRYLLRRCSPPTERQSMLF 197
Query: 58 SASIPQHRRFLHNCIQQKWTKSDVVHVHVN------AIKPLPSCLHHRFVI--CGKKMKY 109
SA++ W ++ + H+N A + R VI + K
Sbjct: 198 SATL-------------SWRVMELAYEHMNNPEKVQAQAETVTADRIRQVIYYPANEQKI 244
Query: 110 QTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFL-SNSYKGSSDVLLLEEEM 168
L+ L + PE I+FV + + + D+L +N K + LL ++
Sbjct: 245 PLLIGLARKLQPERAIVFVNTKHWAER----------VCDWLNANELKAA----LLSGDV 290
Query: 169 NFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R+ L + +G LV+TD+AARG+ +P+ TH++NFDLP+S DY+HR GRT R
Sbjct: 291 PQTKRSRLLSQFAEGKYRYLVATDVAARGLHIPDVTHVFNFDLPQSGEDYVHRIGRTAR 349
>gi|332704960|ref|ZP_08425046.1| DNA/RNA helicase, Superfamily II [Moorea producens 3L]
gi|332356312|gb|EGJ35766.1| DNA/RNA helicase, Superfamily II [Moorea producens 3L]
Length = 469
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 123/252 (48%), Gaps = 24/252 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+++ KLE++ +V+DE D + S + +KK+L + RQT SA++
Sbjct: 130 GRVIDLLDRGDLKLENLSWVVLDEADEML-SMGFIDDVKKILQQ--TPEERQTTCFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK-MKYQTLLSLIQSDA 120
P R + + K+ KS V V V K P+ + R + + K + L +++ +
Sbjct: 187 P---RPIQELVS-KFLKSPVT-VKVQQSKAAPARIEQRVYMVPRGCSKIRALHPILELED 241
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE+ IIFV +++KA + L S + Y G +++ + R L
Sbjct: 242 PEASIIFV-----RTRKAAAELTNQLQAAGHSVDEYHG---------DLSQSQRERLLYR 287
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R+ +V+TDIAARG+D+ TH+ NFDLP Y+HR GRTGR + T+
Sbjct: 288 FRKNQVRWVVATDIAARGLDVDHLTHVINFDLPDQVESYIHRIGRTGRAGKTGTAITLIQ 347
Query: 240 IITSEELFVLQR 251
+L+ ++R
Sbjct: 348 PFERRKLYQIER 359
>gi|319654684|ref|ZP_08008763.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
gi|317393600|gb|EFV74359.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
Length = 472
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 123/266 (46%), Gaps = 24/266 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L+ V ++DE D + N + ++ +LA RQT+ SA++
Sbjct: 110 GRILDHINRKTMRLDHVHTAILDEADEMLNMGF-IDDIEAILAQIPE--ERQTLLFSATM 166
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + +++ K + V V A + S + ++ +K K+ L L+ +P
Sbjct: 167 PAPIRRM----AERFMKEPQI-VRVKAKEMTVSSIEQYYIEVHEKNKFDVLTRLLDIQSP 221
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L +++ G +++ R + L + +
Sbjct: 222 ELAIVF-GRTKRRVDELAEALN---LRGYMAEGIHG---------DLSQAKRISVLRKFK 268
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 269 EGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKTGVAMTFI 325
Query: 242 TSEELFVLQRYENELKFKSEELTLQT 267
E L E K K E + T
Sbjct: 326 NPREKSYLHVVERTTKRKMERMDAPT 351
>gi|291276231|gb|ADD91316.1| vasa [Seriola quinqueradiata]
Length = 650
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 20/229 (8%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFAS 58
+G L +I + L ++ LV+DE D + + + +++L+ S S RQT+ S
Sbjct: 350 LGRLLDVIGRGKVGLHKLRYLVLDEADRMLDMGFE-PDMRRLVGSPGMPSKEKRQTLMFS 408
Query: 59 ASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
A+ P+ + + + K+D + + V + S + +F+ K K + LL ++++
Sbjct: 409 ATYPEDIQRM----AADFLKTDYLFLAVGVVGGACSDVEQKFIEVTKFSKREQLLDILKT 464
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
E ++FV E ++A + FL ++ + E+ R +L
Sbjct: 465 TGTERTMVFV----ETKRQA------DFIATFLCQEKVPTTSIHGDREQ---REREQALA 511
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ R G +LV+T +AARG+D+P+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 512 DFRSGRCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGR 560
>gi|407793557|ref|ZP_11140590.1| ATP-dependent RNA helicase RhlB [Idiomarina xiamenensis 10-D-4]
gi|407214634|gb|EKE84478.1| ATP-dependent RNA helicase RhlB [Idiomarina xiamenensis 10-D-4]
Length = 437
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 105/226 (46%), Gaps = 19/226 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L ++ ++ L++++V+V+DE D +F+ + ++ L RQ + SA++
Sbjct: 142 GRLIDYYKQGVYSLDNIEVVVLDEADRMFDLGF-IKDIRFLFQRMPKPAQRQNLLFSATL 200
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ L TK +V A + + K K + LL+LI+ D P
Sbjct: 201 SYRVQELAYEHMNAPTKVEVEPNQKTATR-----VSEELFYPSKPDKMKLLLTLIEEDWP 255
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F + K + +L+N V LL ++ R L +
Sbjct: 256 EKAIVFANTKHGCEK----------VYQWLAND---GHRVGLLTGDVAQRKRLKILEQFA 302
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
G +LV+TD+AARG+ +P +H+YNFDLP DY+HR GRTGR
Sbjct: 303 DGELDILVATDVAARGLHIPAVSHVYNFDLPDDCEDYVHRIGRTGR 348
>gi|397676010|ref|YP_006517548.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|395396699|gb|AFN56026.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 506
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 120/255 (47%), Gaps = 31/255 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L E+ L S ++LVIDE D + + + ++ + + +RQT+ SA++
Sbjct: 145 GRLLDLFERGKILLSSCEMLVIDEADRMLDMG-FIPDIETICTKLPT--SRQTLLFSATM 201
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RFL N Q + ++ + +N R + + K + L ++
Sbjct: 202 PPAIKKLADRFLSNPKQIEISRPATANTQIN----------QRLIEVSPRSKKKKLCDML 251
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+++ + IIF ++ + A TTL +G S V + +M+ R +
Sbjct: 252 RAEKDHTAIIFCNRKTTVRQLA-----TTL-------EQQGFS-VGQIHGDMSQPERGSE 298
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + G +LV++DIAARG+D+ +H++NFD+P DY+HR GRTGR S E T
Sbjct: 299 LERFKNGQISVLVASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALT 358
Query: 237 VTSIITSEELFVLQR 251
+ E + +++
Sbjct: 359 FVTPADEEAITAIEK 373
>gi|390455486|ref|ZP_10241014.1| RNA helicase yqfR [Paenibacillus peoriae KCTC 3763]
Length = 461
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 124/266 (46%), Gaps = 28/266 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI K+ ++ +VIDEVD +F +K +L + + +RQ VF SA+
Sbjct: 130 GRVRELIAAKKLKMHNITAIVIDEVDQMFQLGG-AGDVKNILGT--AQRDRQLVFLSAT- 185
Query: 62 PQHRRFLHNCIQQ--KWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
L++ IQ K +D V + ++ + S L H + + ++ K L L++
Sbjct: 186 ------LNDEIQALAKREMNDYVEIGIDPDQKTASGLEHYYFVTEERDKVDMLRRLVRHF 239
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
P ++FV + G + + + S G +D + +R+ L
Sbjct: 240 NPRKALVFV----NTTNAIGEIEAKLNHMGLTTASLYGDADKV---------TRSNVLAR 286
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R+ +L+++D+AARG+D+ + +FD + Y+HRAGRTGR K V S
Sbjct: 287 FREDKLKVLIASDVAARGLDIEGLEMVIHFDPATDSQAYVHRAGRTGR---MGRKGLVVS 343
Query: 240 IITSEELFVLQRYENELKFKSEELTL 265
++T E F+++++ EL E L
Sbjct: 344 VVTERETFIMRKFSRELDINITERAL 369
>gi|209545432|ref|YP_002277661.1| DEAD/DEAH box helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|209533109|gb|ACI53046.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 555
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 25/240 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L E+ L ++LVIDE D + + + ++K++A S RQT+F SA++
Sbjct: 179 GRLIDLFERGGLLLTQTRLLVIDEADRMLDMGF-IPDIEKIVAMLSPV--RQTLFFSATM 235
Query: 62 -PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P+ RR +Q + V+ + + + V+ + K + L +++ DA
Sbjct: 236 APEIRRLADMFLQNPK------EITVSRPSSVATTIETGLVVVDEADKRRVLRRMLRDDA 289
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS-YKGSSDVLLLEEEMNFNSRAASLLE 179
++ I+F + + VD L S K L ++ + R A+L
Sbjct: 290 VQNAIVFCNRKRD--------------VDVLYKSLVKHDFSAGALHGDLPQSVRFATLER 335
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV +D+AARGID+ +H++NFDLP A DY+HR GRTGR S +++ +
Sbjct: 336 FKSGELKILVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRSGHAYSLAT 395
>gi|395764614|ref|ZP_10445238.1| hypothetical protein MCO_00114 [Bartonella sp. DB5-6]
gi|395414151|gb|EJF80600.1| hypothetical protein MCO_00114 [Bartonella sp. DB5-6]
Length = 467
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 129/272 (47%), Gaps = 46/272 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL + RQT+F SA
Sbjct: 136 GRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKL-----TPFTRQTLFFSA 190
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++ ++FLH+ + + TK+ + + R V G K K L
Sbjct: 191 TMAPEITKLTKQFLHSPVSVEVTKASST----------ATTITQRLVKSGNKPWDKRAVL 240
Query: 113 LSLIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LI ++ + + IIF + + S+ L + + + V L +M+
Sbjct: 241 RELIHNEGNDLKNAIIFCNRKRDISE---------LFRSLIRHHFS----VGALHGDMDQ 287
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
SR +L + + LLV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 288 YSRTNTLADFKNNKITLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANR 347
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSEE 262
S + +T I+T ++ Q+Y N ++ S E
Sbjct: 348 SGKAFT---IVTKDD----QKYVNAIEEMSNE 372
>gi|395546099|ref|XP_003774931.1| PREDICTED: uncharacterized protein LOC100929780 [Sarcophilus
harrisii]
Length = 1328
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 131/272 (48%), Gaps = 42/272 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G LC L L ++ LV+DE D + + + S + K+L+ +RQT+ SA+
Sbjct: 1054 GRLCDLQSNDFITLNTITYLVLDEADKMLDMGFE-SQIMKILSDIRP--DRQTIMISATW 1110
Query: 62 PQHRRFLHNCIQQKWTKSD-VVHV------HVNAIKPLPSCLHHRFVICGKKMKYQTLLS 114
P R L +K+ K +V+V VN +K + +I ++ K + S
Sbjct: 1111 PDAVRRL----SRKYLKDPMIVYVGTLDLAAVNTVK-------QKIIITTEQEKRGLVHS 1159
Query: 115 LIQSDAPESG-IIFVGEQSEKSKKAGNAPSTTLLVDFLSN--SYKGSSDVLLLEEEMNFN 171
I S PE IIFV + L+ D +S+ S +G V L N
Sbjct: 1160 FIDSMKPEDKVIIFVDRK--------------LIADDISSDLSIRGIP-VQSLHGSREQN 1204
Query: 172 SRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS 231
R +L E ++G +L++TD+A+RG+D+ + TH+YNFD P++ Y+HR GRTGR S
Sbjct: 1205 DREQALNEFKEGVVKILIATDLASRGLDILDITHVYNFDFPQNIEVYIHRIGRTGRAGKS 1264
Query: 232 DEKWTVTSIITSEELFVLQRYENELKFKSEEL 263
E T ++T ++ V + N L ++E+
Sbjct: 1265 GEAIT---LLTKDDWKVAEELINILHRANQEV 1293
>gi|395766742|ref|ZP_10447280.1| hypothetical protein MCS_00213 [Bartonella doshiae NCTC 12862]
gi|395415354|gb|EJF81788.1| hypothetical protein MCS_00213 [Bartonella doshiae NCTC 12862]
Length = 472
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 130/272 (47%), Gaps = 46/272 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL + RQT+F SA
Sbjct: 139 GRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKL-----TPFTRQTLFFSA 193
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++ ++FLH+ + + TK+ + + R V G K K L
Sbjct: 194 TMAPEITKLTKQFLHSPVSIEVTKASST----------ATTITQRLVKSGSKSWDKRAVL 243
Query: 113 LSLIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LI ++ E + IIF + + S+ L + +++ V L +M+
Sbjct: 244 RKLIHNEGDELKNAIIFCNRKRDISE---------LFRSLIRHNFS----VGALHGDMDQ 290
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R ++L + + LLV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 291 YARMSTLADFKDNKLTLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANR 350
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSEE 262
S + +T I+T + Q+Y N ++ S E
Sbjct: 351 SGKAFT---IVTKND----QKYINAIEEMSSE 375
>gi|425436507|ref|ZP_18816943.1| putative RNA helicase [Microcystis aeruginosa PCC 9432]
gi|425451380|ref|ZP_18831202.1| putative RNA helicase [Microcystis aeruginosa PCC 7941]
gi|440752520|ref|ZP_20931723.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
TAIHU98]
gi|389678768|emb|CCH92412.1| putative RNA helicase [Microcystis aeruginosa PCC 9432]
gi|389767364|emb|CCI07225.1| putative RNA helicase [Microcystis aeruginosa PCC 7941]
gi|440177013|gb|ELP56286.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
TAIHU98]
Length = 479
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 134/268 (50%), Gaps = 39/268 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+++ LES+ +V+DE D + S + +KK+L +S + RQT SA++
Sbjct: 130 GRVIDLLDRKKLHLESLNWVVLDEADEML-SMGFIDDVKKIL--QASPSTRQTACFSATM 186
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHR-FVICGKKMKYQTLLSLIQSD 119
P+ R + N ++ V V V+ + P+ + + ++I K + L L++ +
Sbjct: 187 PREIRDLIANFLKSP------VSVTVSQPQAAPAKIEQKIYLIPRGWTKLKVLQPLLEIE 240
Query: 120 APESGIIFV------GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
ES IIFV E + K ++AG VD Y G+ ++ R
Sbjct: 241 PLESAIIFVRTKQTAAELTSKLQEAGQT------VD----EYHGN---------LSQVQR 281
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ R+G L+V+TDIAARG+D+ +H+ N+DLP +A Y+HR GRTGR + +
Sbjct: 282 ERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGR---AGK 338
Query: 234 KWTVTSIITSEELFVLQRYENELKFKSE 261
T S++ + +L++ E L+ + E
Sbjct: 339 TGTAISLVEPIDRRLLRQIEQRLRQRLE 366
>gi|339018830|ref|ZP_08644953.1| DNA/RNA helicase [Acetobacter tropicalis NBRC 101654]
gi|338752044|dbj|GAA08257.1| DNA/RNA helicase [Acetobacter tropicalis NBRC 101654]
Length = 487
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 114/232 (49%), Gaps = 33/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L E+ L ++LVIDE D + + + ++K++ + NRQT+F SA++
Sbjct: 113 GRLLDLFERGGLLLNQTRILVIDEADRMLDMGF-IPDIEKIVGLLPA--NRQTLFFSATM 169
Query: 62 -PQHRR----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P R+ FLH + +++ V + A VI + K +TL L+
Sbjct: 170 APAIRQLADAFLHTPKEITVSRASSVATTIEA----------GLVIVDEYNKRETLRRLL 219
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRAA 175
+ ++ I+F + + VD L+ S K V L ++ + R A
Sbjct: 220 RDPGMQNAIVFCNRKRD--------------VDVLTRSLTKHGFAVGALHGDLPQSVRFA 265
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L + + G +LV +D+AARGID+ +H++NFDLP A DY+HR GRTGR
Sbjct: 266 TLEKFKSGELKVLVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGR 317
>gi|374292114|ref|YP_005039149.1| ATP-dependent RNA helicase [Azospirillum lipoferum 4B]
gi|357424053|emb|CBS86918.1| ATP-dependent RNA helicase [Azospirillum lipoferum 4B]
Length = 530
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 35/233 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVD------FLFNSSKQVSSLKKLLASYSSCNNRQTV 55
G L L E+ L ++V VIDE D F+ + + VS L K NRQT+
Sbjct: 131 GRLIDLFERGNIMLNDIKVFVIDEADRMLDMGFIPDIERIVSKLPK---------NRQTL 181
Query: 56 FASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSL 115
F SA++P R L + SD + + V + V+ + K + L L
Sbjct: 182 FFSATMPPEIRRLADAFL-----SDPMEISVAPPASPAETVTQAMVLVHEMDKRKALRHL 236
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRA 174
+Q++ ++ IF + + + L S + +V L +M + R
Sbjct: 237 LQTEDVKNAFIFCNRKRD--------------IAVLQKSLERHGFNVGALHGDMVQSKRT 282
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L +QG LLV +D+AARGID+ +H++NFD+P + DY+HR GRTGR
Sbjct: 283 ETLERFKQGEISLLVCSDVAARGIDVQGLSHVFNFDVPLTPDDYVHRIGRTGR 335
>gi|218676540|ref|YP_002395359.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218324808|emb|CAV26511.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 468
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 127/267 (47%), Gaps = 34/267 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNRQTVFASA 59
G L LI + KL+ V+ LV+DE D + + ++++ ++ KLL S +QT+ SA
Sbjct: 186 GRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPS-----KKQTLLFSA 240
Query: 60 SIPQHRRFL-HNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+ P+ + L H + +D + V + + S L R K K L LIQ
Sbjct: 241 TFPEQVKTLTHELL------NDPIEVQLQSANA--STLVQRVFEVEKGRKTALLAHLIQQ 292
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+IFV ++ S L D L YK + + SR L
Sbjct: 293 HEWRQALIFVNAKN----------SCEHLADKL---YKRGIIAEVFHGDKGQGSRTRILE 339
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +L++TDIAARG+D+ + + NFDLPRS DY+HR GR+GR S E
Sbjct: 340 DFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGR---SGEVGLAL 396
Query: 239 SIITSEEL--FVLQRYENELKFKSEEL 263
S+I E+ F + +N+++ + E++
Sbjct: 397 SLIDHEDYHHFTIIEKKNKIRLEREQI 423
>gi|392960905|ref|ZP_10326369.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|421054895|ref|ZP_15517859.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|421058120|ref|ZP_15520852.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B3]
gi|421063576|ref|ZP_15525539.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|421071774|ref|ZP_15532887.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392439998|gb|EIW17686.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|392446362|gb|EIW23647.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392454472|gb|EIW31304.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|392461489|gb|EIW37677.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B3]
gi|392462608|gb|EIW38666.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
Length = 385
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 123/257 (47%), Gaps = 24/257 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI+K ++++ ++IDE D L + K V S+K +L + + +RQ + SA+I
Sbjct: 132 GRILELIQKKKIMSQTIKTIIIDEADRLLDD-KNVDSVKAVLKT--TLKDRQILLFSATI 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ + I + +++ + + P H FV ++ K + + +++
Sbjct: 189 TSNTLAIAKGIMRD---PEIITIAEES-NDRPDISHMYFV-AEQRDKIEVIRKMVRLINA 243
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ ++F+ KS + + S GSS R SL + R
Sbjct: 244 KRALVFIN----KSDDIEETTEKLIYHGLKAASIHGSS---------VKGDRKKSLEDFR 290
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G LLV++D+AARG+D+ +++N DLP YLHR GRTGR + E SII
Sbjct: 291 KGNVQLLVASDVAARGLDIVGIDYVFNLDLPEDPQVYLHRVGRTGR---AGESGIAISII 347
Query: 242 TSEELFVLQRYENELKF 258
T +E+ ++ +YE LK
Sbjct: 348 TKQEVALVHKYEKLLKI 364
>gi|89097884|ref|ZP_01170771.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
gi|89087386|gb|EAR66500.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
Length = 485
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 129/266 (48%), Gaps = 24/266 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L IE+ +L +++ V+DE D + N + ++++L+ RQT+ SA++
Sbjct: 130 GRLIDHIERKTIRLNKIKLAVLDEADEMLNMGF-IEDIERILSEVPE--QRQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + + ++ T+ ++V + + + ++ +K K+ L SL+ +P
Sbjct: 187 P---RRIQSLAERFMTEPEMVQIKAKEL--TVKNIEQHYMEVHEKQKFDVLCSLLDIQSP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F ++KK + ++ + Y + ++ N R + +
Sbjct: 242 ELAIVF-----GRTKKRVDE----VVEGLIKRGYSAEG----IHGDVPQNKRDQVIRRFK 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+ ++V+TD+AARG+D+ +H+YNFD+P+ Y+HR GRTGR + +K + +
Sbjct: 289 EQTIDIMVATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTGR---AGKKGLAVTFV 345
Query: 242 TSEELFVLQRYENELKFKSEELTLQT 267
+ E+ L+ E K K ++ + T
Sbjct: 346 SPREIDHLKLIERVTKTKMAKMPIPT 371
>gi|291165175|gb|ADD81192.1| vasa [Katsuwonus pelamis]
Length = 643
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 112/228 (49%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L ++ LV+DE D + + + +++L+ S S NRQT+ SA
Sbjct: 343 GRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFE-PDMRRLVGSPGMPSKENRQTLMFSA 401
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + K+D + + V + S + F+ K K + L L+++
Sbjct: 402 TYPEDIQRL----AADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLHDLLKTT 457
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV E ++A + FL ++ + E+ R +L +
Sbjct: 458 GMERTMVFV----ETKRQA------DFIATFLCQEKVPTTSIHGDREQ---REREQALTD 504
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 505 FRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGR 552
>gi|188585530|ref|YP_001917075.1| DEAD/DEAH box helicase [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350217|gb|ACB84487.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 474
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 119/262 (45%), Gaps = 36/262 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + KL +V ++ +DE D + N + +K +L S ++QT+ SA++
Sbjct: 130 GRLIDHLNRKTIKLNNVNMVTLDEADEMLNMGF-IEDIKTILQKTPS--HKQTLMFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + + +Q +++ I +PS + ++V + K+ L+ S +P
Sbjct: 187 PGP---IKSLAEQFMNDPEIIRTKTKEIT-VPS-IEQQYVEVKEGDKFDVFCRLVDSQSP 241
Query: 122 ESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
E I+F V E + KK G + + G +M R
Sbjct: 242 EKAIVFGRTKRRVDELYQALKKRG----------YFAEGIHG---------DMPQTKRDH 282
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+ R G LLV+TD+A+RG+D+ +HIYNFD+P+ A Y+HR GRTGR + +
Sbjct: 283 VIKNFRTGATELLVATDVASRGLDVTGISHIYNFDIPQDADSYVHRIGRTGR---AGQSG 339
Query: 236 TVTSIITSEELFVLQRYENELK 257
+++T E L E +K
Sbjct: 340 AAVTLVTPREKGHLNLIEQSIK 361
>gi|390438620|ref|ZP_10227070.1| putative RNA helicase [Microcystis sp. T1-4]
gi|389837951|emb|CCI31194.1| putative RNA helicase [Microcystis sp. T1-4]
Length = 479
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 134/268 (50%), Gaps = 39/268 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+++ LES+ +V+DE D + S + +KK+L +S + RQT SA++
Sbjct: 130 GRVIDLLDRKKLHLESLNWVVLDEADEML-SMGFIDDVKKIL--QASPSTRQTACFSATM 186
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHR-FVICGKKMKYQTLLSLIQSD 119
P+ R + N ++ V V V+ + P+ + + ++I K + L L++ +
Sbjct: 187 PREIRDLIANFLKSP------VSVTVSQPQAAPAKIEQKIYLIPRGWTKLKVLQPLLEIE 240
Query: 120 APESGIIFV------GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
ES IIFV E + K ++AG VD Y G+ ++ R
Sbjct: 241 PLESAIIFVRTKQTAAELTSKLQEAGQT------VD----EYHGN---------LSQVQR 281
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ R+G L+V+TDIAARG+D+ +H+ N+DLP +A Y+HR GRTGR + +
Sbjct: 282 ERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGR---AGK 338
Query: 234 KWTVTSIITSEELFVLQRYENELKFKSE 261
T S++ + +L++ E L+ + E
Sbjct: 339 TGTAISLVEPIDRRLLRQIEQRLRQRLE 366
>gi|163868127|ref|YP_001609331.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
gi|161017778|emb|CAK01336.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
Length = 467
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 127/272 (46%), Gaps = 46/272 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL + RQT+F SA
Sbjct: 136 GRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKL-----TPFTRQTLFFSA 190
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++ ++FLH+ + + TK+ V R V G K K L
Sbjct: 191 TMAPEITKLTKQFLHSPVSVEVTKASSTATTVT----------QRLVKSGNKSWDKRAVL 240
Query: 113 LSLIQSDAP--ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LIQ++ ++ IIF + + S + + K + +V L +M+
Sbjct: 241 RELIQNEGSKLQNAIIFCNRKRDIS-------------ELFRSLIKHNFNVGALHGDMDQ 287
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
SR +L + + LLV++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 288 YSRMNTLADFKNNKLTLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANR 347
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSEE 262
+ +T I+T + Q+Y N ++ S E
Sbjct: 348 LGKAFT---IVTKAD----QKYINAIEEMSHE 372
>gi|453088320|gb|EMF16360.1| DEAD-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 507
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 19/224 (8%)
Query: 9 EKHIFKLESVQVLVIDEVDFLFNSSK--QVSSLKKLLASYSSCNNRQTVFASASIPQHRR 66
E I L+ V+ +V DE D L S K + +++ L + S RQT+ +A++ R
Sbjct: 212 EDTIRGLKKVKFVVFDEADRLLQSGKGSMLGDVERCLDAVPSAAKRQTLLFTATVTPEVR 271
Query: 67 FLHNCIQQKWTKSDVV-HVHVNAIKPLPSCLHHRFVICG--KKMKYQTLLSLIQSDAPES 123
L ++ V V ++++ +PS L + + K KY +L ++ ++
Sbjct: 272 ALKESPRENGRPPPFVSEVDIDSLA-IPSTLTQTYQLVNVLHKEKYLHILLSTPANIQKT 330
Query: 124 GIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQG 183
IIF N +T L++++ S + + L + R +L R G
Sbjct: 331 TIIFT-----------NRTTTANLLEYMLRSLE--HRITALHSALTHEDRVNNLARFRAG 377
Query: 184 GGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+LV+TD+A RG+D+P+ + N+DLPR+ DY+HR GRT R
Sbjct: 378 AARILVATDVAGRGLDIPDVGLVINYDLPRNPDDYIHRVGRTAR 421
>gi|209964196|ref|YP_002297111.1| DEAD/DEAH box helicase [Rhodospirillum centenum SW]
gi|209957662|gb|ACI98298.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
Length = 528
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 125/257 (48%), Gaps = 26/257 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +E+ L V+VLV+DE D + + + +A+ RQT+ +A++
Sbjct: 140 GRLMDHMERGRLDLSGVEVLVLDEADRMLDMG--FREAVEFIAAACPAE-RQTLLFTATL 196
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKMKYQTLLSLIQSDA 120
+ L + + D V + V + + + R++ G + K++ L +L+ +
Sbjct: 197 DRTAERLAQTLTR-----DPVRIDVAGKAVVTAQVEQRWLRADGLEHKHRLLETLLGGEE 251
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSN--SYKGSSDVLLLEEEMNFNSRAASLL 178
GI+F+ +T L D L++ S KG + L +M R +
Sbjct: 252 FGKGIVFI--------------ATKLDADRLADTLSEKGHK-AMPLHGDMQQRDRNRVVQ 296
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+R G ++V+TD+AARGID+ + TH+ NFDLP+ A DY+HR GRTGR S +++
Sbjct: 297 WLRDGRINVIVATDVAARGIDIADLTHVINFDLPKQAEDYVHRIGRTGRAGASGVSYSLF 356
Query: 239 SIITSEELFVLQRYENE 255
+ + ++ ++ Y N+
Sbjct: 357 TRMEWRQVRAIEAYTNK 373
>gi|375090043|ref|ZP_09736362.1| hypothetical protein HMPREF9708_00752 [Facklamia languida CCUG
37842]
gi|374565936|gb|EHR37191.1| hypothetical protein HMPREF9708_00752 [Facklamia languida CCUG
37842]
Length = 499
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 108/226 (47%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI++ + K +Q LV+DE D + N + +K ++ + + NRQT+ SA++
Sbjct: 129 GRLLDLIQRKVLKFNHLQTLVLDEADEMLNMGF-IEDIKAIIQA--TPKNRQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R L Q T+ ++V + ++ + F C K+ L + P
Sbjct: 186 PPVIRDLSG---QFLTQPELVKIEAQSM--TADLVEQYFTKCRDDEKFDLLTRFLDVQTP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ IIF ++KK + L S +G ++ ++ R + + R
Sbjct: 241 KQAIIFC-----RTKKRVDEVGRGL-------SLRGYQ-AEMIHGDITQQKRTSVINAFR 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ LLV+TD+AARG+D+ TH+YN+D+ + Y+HR GRTGR
Sbjct: 288 KEEVELLVATDVAARGLDISGVTHVYNYDISQDPESYVHRIGRTGR 333
>gi|428312689|ref|YP_007123666.1| DNA/RNA helicase [Microcoleus sp. PCC 7113]
gi|428254301|gb|AFZ20260.1| DNA/RNA helicase, superfamily II [Microcoleus sp. PCC 7113]
Length = 466
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 24/228 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+++ +L+ V+ +V+DE D + S + +KK+L S RQT SA++
Sbjct: 130 GRVIDLLDRGDLRLDQVRWVVLDEADEML-SMGFIDDVKKIL--QQSPKERQTACFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHR-FVICGKKMKYQTLLSLIQSDA 120
P+ R L N + KS + V V K PS + R +++ K + L +++ +
Sbjct: 187 PRPIRDLIN----NFLKSPIT-VTVEQPKATPSRIEQRVYMVPRGWTKAKALQPIMELED 241
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE+ +IFV +++KA ++ L S + Y G +++ + R L
Sbjct: 242 PEAALIFV-----RTRKAAAELTSQLQAAGHSVDEYHG---------DLSQSQRERLLYR 287
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ G +V+TDIAARG+D+ TH+ N+DLP Y+HR GRTGR
Sbjct: 288 FKGGQVRWVVATDIAARGLDVDHLTHVINYDLPDQVESYIHRIGRTGR 335
>gi|228963331|ref|ZP_04124496.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228796359|gb|EEM43802.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 510
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 110 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 166
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 167 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 220
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 221 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 266
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 267 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 323
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 324 FVTPRESGQLKNIERTTKRKVDRMEAPT 351
>gi|442609865|ref|ZP_21024598.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
gi|441748659|emb|CCQ10660.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
Length = 422
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 109/231 (47%), Gaps = 29/231 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L ++ F L ++V+V+DE D +F+ + ++ L + R + SA++
Sbjct: 140 GRLIDFYKQGAFSLNEIEVVVLDEADRMFDLGF-IKDIRYLFNRMPERSERMNLLFSATL 198
Query: 62 P---QHRRF--LHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
Q F +HN I + V V K + L H ++ K + LL+LI
Sbjct: 199 SYRVQELAFEHMHNPIHVQ------VEPEVKTAKQIKEELFH----PSQEDKTRLLLTLI 248
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ + PE I+F +K++ L D V LL ++N R A
Sbjct: 249 EEEWPEKAIVFA-----NTKQSCEDVYAWLKAD--------GHRVGLLTGDVNQKKRIAI 295
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + +G LLV+TD+AARG+ +P +H++NFDLP DY+HR GRTGR
Sbjct: 296 LGQFAKGDLDLLVATDVAARGLHIPAVSHVFNFDLPDDCEDYVHRIGRTGR 346
>gi|428222903|ref|YP_007107073.1| DNA/RNA helicase [Synechococcus sp. PCC 7502]
gi|427996243|gb|AFY74938.1| DNA/RNA helicase, superfamily II [Synechococcus sp. PCC 7502]
Length = 511
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 125/270 (46%), Gaps = 31/270 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+++ L + V+DE D + N + ++K+LA + RQT F SA++
Sbjct: 130 GRVIDLMDRGRLDLSHLSWFVLDEADEMLNMGF-IQDVEKILAV--TPPQRQTAFFSATM 186
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSLIQSD 119
P +R + N ++ V V V + PS + + I + K + LL +++ +
Sbjct: 187 PTAVKRLVKNYLRSP------VLVKVESDDSAPSRIEQQVYIVPPHLSKEEALLPILELE 240
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS--RAASL 177
AP S +IFV + SK L D L N+ G S + E N R L
Sbjct: 241 APHSALIFVRTKDAASK----------LTDILQNA--GHS---VDEYHGNLTQVQREGLL 285
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
R +V+TDIAARG+D+ TH+ N D+P Y+HR GRTGR + T
Sbjct: 286 RRFRSEQVRWVVATDIAARGLDIDSLTHVINLDMPDDLERYVHRIGRTGR---AGRTGTA 342
Query: 238 TSIITSEELFVLQRYENELKFKSEELTLQT 267
+II++ E + L+ E + + L + T
Sbjct: 343 ITIISARERYKLRHLEKMIGQTLDALPMPT 372
>gi|319788058|ref|YP_004147533.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
gi|317466570|gb|ADV28302.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
11-1]
Length = 463
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 30/243 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L IE+ L ++VL++DE D + + + S+K++LA NRQT+ SA+
Sbjct: 135 GRLIDHIERRSIDLSGIEVLILDEADRMLDMGF-LPSIKRILAKLPK-QNRQTLLFSATF 192
Query: 62 PQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P+ + F+ N + + T + V + HR K + LL L+
Sbjct: 193 PESIKQLAMEFMRNPREVQVTPQNTVA----------ETIAHRVHPVDTARKRELLLHLL 242
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
DA ++F K+K + +T L K + + R +
Sbjct: 243 GQDARVQTLVFA-----KTKHGSDKLATHL--------EKAGIQAAAIHGNKSQGQRLRA 289
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + + G +LV+TDIAARGID+ + + N+DLP A DY+HR GRTGR + E +
Sbjct: 290 LGDFKSGKVKVLVATDIAARGIDIDQLPRVINYDLPMVAEDYVHRIGRTGRNGANGEALS 349
Query: 237 VTS 239
+ S
Sbjct: 350 LVS 352
>gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2]
gi|357051322|ref|ZP_09112516.1| hypothetical protein HMPREF9478_02499 [Enterococcus saccharolyticus
30_1]
gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2]
gi|355380144|gb|EHG27289.1| hypothetical protein HMPREF9478_02499 [Enterococcus saccharolyticus
30_1]
Length = 502
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL +V+ LV+DE D + N + ++K+++ RQT+ SA++
Sbjct: 128 GRMLDHINRHTLKLGTVETLVLDEADEMLNMGF-LEDIEKIISQVPE--ERQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ K+ HV + A + + +V K+ + L+ P
Sbjct: 185 PPAIK----SIGVKFMKNPE-HVQIKAKEMTADLIDQYYVRSKDYEKFDIMTRLLDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + YK + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYKAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 SGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGISVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMSYLHVIEN 356
>gi|406040161|ref|ZP_11047516.1| ATP-dependent RNA helicase RhlB [Acinetobacter ursingii DSM 16037 =
CIP 107286]
Length = 383
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 125/270 (46%), Gaps = 26/270 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L IE+ L+ ++ LVIDE D L + + S+K+++ RQT+ SA+
Sbjct: 138 GRLIDFIEQKEIWLDQIEFLVIDEADRLLDMGF-IPSVKRIVRYSPRKEERQTLMFSAT- 195
Query: 62 PQHRRFLHNCIQ--QKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
F ++ + ++W + V V + + + + R + KK KY+ L +++ +
Sbjct: 196 -----FSYDVLNLARQWL-FEPVTVEIEPEQKTNNDVEQRVYVVEKKDKYRLLQDILRDE 249
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
+ +IF + + + L D L K V +L E+ + R L +
Sbjct: 250 PIDKVMIFANRRDQVRR----------LYDHLK---KDGYRVGMLSGEIAQDKRLKMLEQ 296
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+QG ++++TD+A RGI + +H+ NF LP + DY+HR GRTGR + + S
Sbjct: 297 FKQGKNNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGR---AGSQGVSIS 353
Query: 240 IITSEELFVLQRYENELKFKSEELTLQTQC 269
++ ++ F L E + K L+ C
Sbjct: 354 FLSEDDAFYLPEIEKAIGKKLPLTRLEGYC 383
>gi|380012841|ref|XP_003690483.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Apis
florea]
Length = 681
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 108/241 (44%), Gaps = 31/241 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+E I + S+ LV+DE D + + + K LL +RQTV SA+
Sbjct: 401 GRLNDLVESKILNISSITYLVLDEADRMLDMGFEPQIRKTLLDIRP---DRQTVMTSATW 457
Query: 62 PQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
PQ R ++ + IQ D+ VH + + I ++ K +
Sbjct: 458 PQGVRRLAQSYMKHPIQVFVGSLDLATVH---------TVMQKIYIVDEEEKTDMMYEFF 508
Query: 117 QSDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ +P + IIF G K K + S L S G + + R
Sbjct: 509 RKMSPSDKVIIFFG----KKTKVDDVASDLALQSVNCQSIHGGREQ---------SDREQ 555
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+L +++ G +L++TD+A+RGID+ + TH+ N+D PR +Y+HR GRTGR S E
Sbjct: 556 ALEDLKTGEVQILLATDVASRGIDIEDITHVLNYDFPRDIEEYVHRVGRTGRAGRSGESI 615
Query: 236 T 236
T
Sbjct: 616 T 616
>gi|425442860|ref|ZP_18823096.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9717]
gi|425467451|ref|ZP_18846734.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9809]
gi|389715972|emb|CCH99724.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9717]
gi|389829775|emb|CCI28639.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9809]
Length = 479
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 134/268 (50%), Gaps = 39/268 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+++ LES+ +V+DE D + S + +KK+L +S + RQT SA++
Sbjct: 130 GRVIDLLDRKKLHLESLNWVVLDEADEML-SMGFIDDVKKIL--QASPSTRQTACFSATM 186
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHR-FVICGKKMKYQTLLSLIQSD 119
P+ R + N ++ V V V+ + P+ + + ++I K + L L++ +
Sbjct: 187 PREIRDLIANFLKSP------VSVTVSQPQAAPAKIEQKIYLIPRGWTKLKVLQPLLEIE 240
Query: 120 APESGIIFV------GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
ES IIFV E + K ++AG VD Y G+ ++ R
Sbjct: 241 PLESAIIFVRTKQTAAELTSKLQEAGQT------VD----EYHGN---------LSQVQR 281
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ R+G L+V+TDIAARG+D+ +H+ N+DLP +A Y+HR GRTGR + +
Sbjct: 282 ERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGR---AGK 338
Query: 234 KWTVTSIITSEELFVLQRYENELKFKSE 261
T S++ + +L++ E L+ + E
Sbjct: 339 TGTAISLVEPIDRRLLRQIEQRLRQRLE 366
>gi|313890723|ref|ZP_07824348.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
pseudoporcinus SPIN 20026]
gi|416852122|ref|ZP_11909267.1| DEAD/DEAH box helicase [Streptococcus pseudoporcinus LQ 940-04]
gi|313120824|gb|EFR43938.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
pseudoporcinus SPIN 20026]
gi|356739611|gb|EHI64843.1| DEAD/DEAH box helicase [Streptococcus pseudoporcinus LQ 940-04]
Length = 538
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 117/259 (45%), Gaps = 36/259 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ V+ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDHVETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 183
Query: 61 IPQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSL 115
+P +F+ N + ++ +V+V +V ++ K+ T+ L
Sbjct: 184 MPAPIKQIGVKFMKNPEHVQIKNKELTNVNV----------EQYYVRVKEQEKFDTMTRL 233
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ D PE I+F ++ L F + G +++ N R
Sbjct: 234 MDVDQPELSIVF----GRTKRRVDEITRGLKLRGFRAEGIHG---------DLDQNKRLR 280
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+ + + +LV+TD+AARG+D+ TH+YN+D+ + Y+HR GRTGR S E
Sbjct: 281 VIRDFKGDQVDILVATDVAARGLDISNVTHVYNYDITQDPESYVHRIGRTGRAGKSGESI 340
Query: 236 TVTSIITSEELFVLQRYEN 254
T ++ E+ L EN
Sbjct: 341 T---FVSPNEMGYLSMIEN 356
>gi|257081095|ref|ZP_05575456.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
gi|256989125|gb|EEU76427.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
Length = 513
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + KLE+V+ LV+DE D + N + ++K+++ RQT+ SA++
Sbjct: 128 GRLLDHINRRTLKLETVETLVLDEADEMLNMG-FLEDIEKIISQVPE--QRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + N I K+ K HV + A + + +V K+ + L+ P
Sbjct: 185 PPA---IKN-IGVKFMKQPE-HVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + YK + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYKAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 NGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMGYLHVIEN 356
>gi|255971301|ref|ZP_05421887.1| helicase [Enterococcus faecalis T1]
gi|256617719|ref|ZP_05474565.1| helicase [Enterococcus faecalis ATCC 4200]
gi|256761605|ref|ZP_05502185.1| helicase [Enterococcus faecalis T3]
gi|256854305|ref|ZP_05559669.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
gi|256957293|ref|ZP_05561464.1| helicase [Enterococcus faecalis DS5]
gi|256959973|ref|ZP_05564144.1| helicase [Enterococcus faecalis Merz96]
gi|256964332|ref|ZP_05568503.1| helicase [Enterococcus faecalis HIP11704]
gi|257077733|ref|ZP_05572094.1| helicase [Enterococcus faecalis JH1]
gi|257083763|ref|ZP_05578124.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
gi|257086188|ref|ZP_05580549.1| helicase [Enterococcus faecalis D6]
gi|257089260|ref|ZP_05583621.1| helicase [Enterococcus faecalis CH188]
gi|257415413|ref|ZP_05592407.1| helicase [Enterococcus faecalis ARO1/DG]
gi|257418444|ref|ZP_05595438.1| helicase [Enterococcus faecalis T11]
gi|257421095|ref|ZP_05598085.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
gi|294781261|ref|ZP_06746607.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
gi|300859873|ref|ZP_07105961.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TUSoD Ef11]
gi|384517892|ref|YP_005705197.1| DEAD/DEAH box helicase [Enterococcus faecalis 62]
gi|397699239|ref|YP_006537027.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis D32]
gi|428766354|ref|YP_007152465.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis str. Symbioflor 1]
gi|430358725|ref|ZP_19425485.1| helicase [Enterococcus faecalis OG1X]
gi|430367031|ref|ZP_19427744.1| helicase [Enterococcus faecalis M7]
gi|255962319|gb|EET94795.1| helicase [Enterococcus faecalis T1]
gi|256597246|gb|EEU16422.1| helicase [Enterococcus faecalis ATCC 4200]
gi|256682856|gb|EEU22551.1| helicase [Enterococcus faecalis T3]
gi|256709865|gb|EEU24909.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
gi|256947789|gb|EEU64421.1| helicase [Enterococcus faecalis DS5]
gi|256950469|gb|EEU67101.1| helicase [Enterococcus faecalis Merz96]
gi|256954828|gb|EEU71460.1| helicase [Enterococcus faecalis HIP11704]
gi|256985763|gb|EEU73065.1| helicase [Enterococcus faecalis JH1]
gi|256991793|gb|EEU79095.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
gi|256994218|gb|EEU81520.1| helicase [Enterococcus faecalis D6]
gi|256998072|gb|EEU84592.1| helicase [Enterococcus faecalis CH188]
gi|257157241|gb|EEU87201.1| helicase [Enterococcus faecalis ARO1/DG]
gi|257160272|gb|EEU90232.1| helicase [Enterococcus faecalis T11]
gi|257162919|gb|EEU92879.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
gi|294451597|gb|EFG20053.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
gi|300850691|gb|EFK78440.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TUSoD Ef11]
gi|323480025|gb|ADX79464.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
gi|397335878|gb|AFO43550.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis D32]
gi|427184527|emb|CCO71751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis str. Symbioflor 1]
gi|429513550|gb|ELA03129.1| helicase [Enterococcus faecalis OG1X]
gi|429516845|gb|ELA06321.1| helicase [Enterococcus faecalis M7]
Length = 515
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + KLE+V+ LV+DE D + N + ++K+++ RQT+ SA++
Sbjct: 128 GRLLDHINRRTLKLETVETLVLDEADEMLNMG-FLEDIEKIISQVPE--QRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + N I K+ K HV + A + + +V K+ + L+ P
Sbjct: 185 PPA---IKN-IGVKFMKQPE-HVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + YK + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYKAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 NGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMGYLHVIEN 356
>gi|423515083|ref|ZP_17491564.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-4]
gi|401168046|gb|EJQ75314.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-4]
Length = 540
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE IIF ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIIF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|423370478|ref|ZP_17347885.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD142]
gi|401073949|gb|EJP82358.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD142]
Length = 542
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE IIF ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIIF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|163938237|ref|YP_001643121.1| DEAD/DEAH box helicase [Bacillus weihenstephanensis KBAB4]
gi|229131241|ref|ZP_04260147.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST196]
gi|423514499|ref|ZP_17491006.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-1]
gi|163860434|gb|ABY41493.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
KBAB4]
gi|228652232|gb|EEL08163.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST196]
gi|402442074|gb|EJV74016.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-1]
Length = 538
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE IIF ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIIF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|229188506|ref|ZP_04315550.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
10876]
gi|228594969|gb|EEK52744.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
10876]
Length = 528
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|319783363|ref|YP_004142839.1| DEAD/DEAH box helicase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317169251|gb|ADV12789.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 474
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ + L + LV+DE D + + ++ +K++ + ++ +RQTV SA++
Sbjct: 148 GRLTDLVREGDLMLADTKWLVLDEGDRMLDMG-FINDVKRI--AKATAPDRQTVLFSATM 204
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L + + + +V A + + + R K K Q L +++ +
Sbjct: 205 PNEIAELAKGLLKNPIRVEVAPQSTAAAEIVQGVVFAR-----TKQKRQVLSTMLADETM 259
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+S IIF ++K + + D + +K + ++ + N+R +L + R
Sbjct: 260 KSVIIF-----SRTKHGAD----RVTKDLERDGFKAA----VIHGNKSQNARQKALNDFR 306
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
G +LV+TDIAARGID+P +H+ NFDLP A Y+HR GRTGR
Sbjct: 307 DGSVRILVATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGR 352
>gi|218248985|ref|YP_002374356.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 8801]
gi|257062070|ref|YP_003139958.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 8802]
gi|218169463|gb|ACK68200.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8801]
gi|256592236|gb|ACV03123.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
Length = 485
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 135/267 (50%), Gaps = 37/267 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+++ E ++ V+DE D + S + +KK+L + + R T SA++
Sbjct: 130 GRVIDLLDRKKLSFEGLRWAVLDEADEML-SMGFIDDVKKILKQ--TPDTRSTACFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCL-HHRFVICGKKMKYQTLLSLIQSDA 120
P+ R L N ++ KS V V V + PS + H + + K + L +++ +A
Sbjct: 187 PREIRELVN----QFLKSPVT-VAVEQPQAAPSKIEQHLYNVPRGWSKLKALQPILELEA 241
Query: 121 PESGIIFV------GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
PES IIFV E + K ++AG + VD Y G+ ++ + R
Sbjct: 242 PESAIIFVRTKQTAAELTCKLQEAGQS------VD----EYHGN---------LSQSQRE 282
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEK 234
+ R+G L+V+TDIAARG+D+ +H+ N+DLP +A Y+HR GRTGR + +
Sbjct: 283 RLVYRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGR---AGKT 339
Query: 235 WTVTSIITSEELFVLQRYENELKFKSE 261
T S++ + ++++ E +L+ + E
Sbjct: 340 GTAISLVEPIDRRMIKQIERKLRQQLE 366
>gi|89099486|ref|ZP_01172362.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
gi|89085872|gb|EAR64997.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
Length = 479
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 122/253 (48%), Gaps = 27/253 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I++ +L++V ++DE D + N + ++ +LAS RQT+ SA++
Sbjct: 110 GRVLDHIKRKTLRLDNVHTAILDEADEMLNMGF-IEDIESILASVPV--ERQTLLFSATM 166
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIK-PLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P + ++ ++ V + PL + +V ++ K+ L L+ +
Sbjct: 167 PAP---IQRMAERFMRDPQIIRVKAKEMTVPL---IEQFYVEVQERTKFDVLTRLLNIQS 220
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE IIF G + + A + L FL+ G +++ R + L +
Sbjct: 221 PELAIIF-GRTKRRVDELAEALN---LRGFLAEGIHG---------DLSQAKRMSVLRKF 267
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR E +T I
Sbjct: 268 KEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRA--GKEGMAMTFI 325
Query: 241 ITSEE--LFVLQR 251
E+ L V++R
Sbjct: 326 TPREKSYLAVVER 338
>gi|404329444|ref|ZP_10969892.1| hypothetical protein SvinD2_05074 [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 488
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 27/229 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I++H +L +++V+V+DE D + N + + ++L + + RQT+ SA++
Sbjct: 128 GRLLDHIKRHTIRLGNIKVIVLDEADEMLNMGF-IDDIHEILEN--TPEERQTLLFSATM 184
Query: 62 P---QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
P QH + +K+ K + + + A S + +V + K+ L +
Sbjct: 185 PGPIQH-------LAEKFMKDPKI-IQIKAKTLTVSLIDQEYVKVREPEKFDALTRFLDI 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
PE I+F G + + L+ Y+ + ++ + R L
Sbjct: 237 QMPERAIVF-GRTKRRVDE--------LMRALQKRGYEAEG----IHGDLTQSKRDLVLR 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ LLV+TD+AARG+D+ TH+YNFDLP+ Y+HR GRTGR
Sbjct: 284 RFKNNEVKLLVATDVAARGLDISNVTHVYNFDLPQDPESYVHRIGRTGR 332
>gi|307278457|ref|ZP_07559532.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
gi|306504963|gb|EFM74158.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
Length = 536
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 116/253 (45%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + KLE+V+ LV+DE D + N + ++K+++ RQT+ SA++
Sbjct: 149 GRLLDHINRRTLKLETVETLVLDEADEMLNMG-FLEDIEKIISQVPE--QRQTLLFSATM 205
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ K HV + A + + +V K+ + L+ P
Sbjct: 206 PPAIK----NIGVKFMKQPE-HVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTP 260
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + YK + +++ R + L +
Sbjct: 261 ELTIVF-GRTKRRVDE--------LARGLEARGYKAEG----IHGDLSQQKRMSVLRSFK 307
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 308 NGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 364
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 365 TPNEMGYLHVIEN 377
>gi|229159401|ref|ZP_04287421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
gi|228624068|gb|EEK80874.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
Length = 528
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|148657801|ref|YP_001278006.1| DEAD/DEAH box helicase [Roseiflexus sp. RS-1]
gi|148569911|gb|ABQ92056.1| DEAD/DEAH box helicase domain protein [Roseiflexus sp. RS-1]
Length = 467
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 120/239 (50%), Gaps = 24/239 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +E+ LE + +L++DE D +F+ + ++++L + RQT+ SA++
Sbjct: 129 GRLLDHLERGTLTLEHLDMLILDEADQMFDMGF-LPDVRRIL--RLAPAQRQTMLFSATM 185
Query: 62 PQHRRFL-HNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P R L +++ T + + P+ + H + + + +K L+ L++
Sbjct: 186 PDAIRALAREALREPQT------IQIGRSAPVSTVTHAIYPVA-EHLKTALLIELLRHTD 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
S +IF ++K S TL Y+ ++ L+ M+ N R A+L
Sbjct: 239 TGSVLIFT-----RTKHRAQHLSDTLA----RMGYRATA----LQGNMSQNRRQAALDGF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R G +LV+TDIAARGID+ +H+ N+D+P++A Y HR GRTGR + + +T+ +
Sbjct: 286 RSGRYQILVATDIAARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVT 344
>gi|334340716|ref|YP_004545696.1| DEAD/DEAH box helicase [Desulfotomaculum ruminis DSM 2154]
gi|334092070|gb|AEG60410.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum ruminis DSM
2154]
Length = 482
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 127/259 (49%), Gaps = 26/259 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ +L+ ++++V+DE D + N + ++ +L RQ++ SA++
Sbjct: 129 GRLMDHMDRRTLRLQGIKMVVLDEADEMLNMGF-IEDIEAILQEIP--EERQSLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + L Q++ K D + + A + + ++ ++ K++ L L+ + +P
Sbjct: 186 PKPIQVL----AQRFLK-DPEFISIKAKEVTVPSIDQSYIEVQEREKFEALCRLLDTQSP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRAASLLEV 180
E I+F T VD L + K + +++ + R + L +
Sbjct: 241 ELAIVF--------------GRTKRRVDELYEALNKRGYSAEGIHGDLSQSKRDSVLRQF 286
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++ +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K +
Sbjct: 287 KEATIDVLVATDVAARGLDISGVTHVYNFDIPQDPEGYVHRIGRTGR---AGKKGEAITF 343
Query: 241 ITSEELFVLQRYENELKFK 259
+T E+ L+ EN K K
Sbjct: 344 VTPREIHHLRMIENITKRK 362
>gi|444915540|ref|ZP_21235671.1| ATP-dependent RNA helicase RhlE [Cystobacter fuscus DSM 2262]
gi|444713263|gb|ELW54166.1| ATP-dependent RNA helicase RhlE [Cystobacter fuscus DSM 2262]
Length = 486
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 22/227 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ + ++++V V+DE D + + + +K+++A+ RQT+F SA++
Sbjct: 135 GRLLDLMNQGFVSYKALEVFVLDEADRMLDMGF-IHDVKRVIAALP--RPRQTLFFSATM 191
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD-A 120
P + L N I K + +V V A + R K+ K L+ L+ SD
Sbjct: 192 PPEIQGLANSILVKPVRVEVAPVSTTA-----ETIDQRLYFVEKEQKRGLLVHLLNSDQG 246
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
+ ++F ++K N + L ++ G+ + + N+R +L
Sbjct: 247 IQRALVFT-----RTKHGANR-----VARHLESAGIGAEPI---HGNKSQNARERALAAF 293
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ G +LV+TDIAARGID+ +H+ NFDLP Y+HR GRTGR
Sbjct: 294 KSGACRVLVATDIAARGIDIDGISHVINFDLPNIPETYVHRIGRTGR 340
>gi|255973920|ref|ZP_05424506.1| helicase [Enterococcus faecalis T2]
gi|255966792|gb|EET97414.1| helicase [Enterococcus faecalis T2]
Length = 515
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + KLE+V+ LV+DE D + N + ++K+++ RQT+ SA++
Sbjct: 128 GRLLDHINRRTLKLETVETLVLDEADEMLNMG-FLEDIEKIISQVPE--QRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + N I K+ K HV + A + + +V K+ + L+ P
Sbjct: 185 PPA---IKN-IGVKFMKQPE-HVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + YK + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYKAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 NGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMGYLHVIEN 356
>gi|407708172|ref|YP_006831757.1| hypothetical protein MC28_4936 [Bacillus thuringiensis MC28]
gi|407385857|gb|AFU16358.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
MC28]
Length = 507
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|423421599|ref|ZP_17398688.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-1]
gi|401097261|gb|EJQ05289.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-1]
Length = 532
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|332523459|ref|ZP_08399711.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
str. Jelinkova 176]
gi|332314723|gb|EGJ27708.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
str. Jelinkova 176]
Length = 538
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 117/259 (45%), Gaps = 36/259 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ V+ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDHVETLILDEADEMLN----MGFLEDIEAIISRVPEERQTLLFSAT 183
Query: 61 IPQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSL 115
+P +F+ N + ++ +V+V +V ++ K+ T+ L
Sbjct: 184 MPAPIKQIGVKFMKNPEHVQIKNKELTNVNV----------EQYYVRVKEQEKFDTMTRL 233
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+ D PE I+F ++ L F + G +++ N R
Sbjct: 234 MDVDQPELSIVF----GRTKRRVDEITRGLKLRGFRAEGIHG---------DLDQNKRLR 280
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+ + + +LV+TD+AARG+D+ TH+YN+D+ + Y+HR GRTGR S E
Sbjct: 281 VIRDFKGDQVDILVATDVAARGLDISNVTHVYNYDITQDPESYVHRIGRTGRAGKSGESI 340
Query: 236 TVTSIITSEELFVLQRYEN 254
T ++ E+ L EN
Sbjct: 341 T---FVSPNEMGYLSMIEN 356
>gi|302670646|ref|YP_003830606.1| RNA helicase DEAD/DEAH box family protein [Butyrivibrio
proteoclasticus B316]
gi|302395119|gb|ADL34024.1| RNA helicase DEAD/DEAH box family [Butyrivibrio proteoclasticus
B316]
Length = 711
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 123/262 (46%), Gaps = 25/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + + +H K++ V+VLV+DE D + + + ++ +L RQT SA++
Sbjct: 187 GRVMDHMRRHTMKMKDVKVLVLDEADEMLDMGFR-EDIETILQGMPM--ERQTALFSATM 243
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ L I + + KSD ++ + + + + + +K+K L+ L+ P
Sbjct: 244 PEA--ILK--ITKTYQKSDAEYIKMTPKEITVAAIEQAYYRVPQKLKEDVLVRLMDYYNP 299
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVL-LLEEEMNFNSRAASLLEV 180
+IF +T +VD L+ S KG + L +++ N R +
Sbjct: 300 ARSLIFC--------------NTKRMVDQLAESLKGKGYLADGLHGDLSQNQRDTVMNLF 345
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R G +L++TD+AARGID+ ++N+D+P Y+HR GRTGR S +T +
Sbjct: 346 RNGRINILIATDVAARGIDVSGVEAVFNYDIPEDIEYYVHRIGRTGRAGRSGMSFT---L 402
Query: 241 ITSEELFVLQRYENELKFKSEE 262
+ E++ L+ E K EE
Sbjct: 403 VGGREMYKLREIEKVCHTKIEE 424
>gi|229015638|ref|ZP_04172628.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
gi|229021830|ref|ZP_04178406.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
gi|423393316|ref|ZP_17370542.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-3]
gi|228739470|gb|EEL89890.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
gi|228745658|gb|EEL95670.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
gi|401630235|gb|EJS48042.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-3]
Length = 530
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|170053024|ref|XP_001862487.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
gi|167873709|gb|EDS37092.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
Length = 935
Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats.
Identities = 72/235 (30%), Positives = 115/235 (48%), Gaps = 35/235 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +E+ I L LV+DE D + + + ++K++ +RQ + SA+
Sbjct: 387 GRLIDFLERGITNLRRCTYLVLDEADRMLDMGFE-PQIRKIIEQIRP--DRQVLMWSATW 443
Query: 62 PQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFV-ICGKKMKYQTLLSL 115
P+ + FLH+ IQ ++V ++ + H+ V IC + K LLSL
Sbjct: 444 PKEVQALAEDFLHDYIQ----------INVGSLNLSANHNIHQIVDICEENEKEGKLLSL 493
Query: 116 ---IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172
I SD IIFV E KK + LL + + + Y +S + + + +
Sbjct: 494 LKEIASDVNNKIIIFV----ETKKKVED-----LLKNIVRDGYGATS----IHGDKSQSE 540
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R L + R G +LV+TD+AARG+D+ + ++ NFD P S+ DY+HR GRTGR
Sbjct: 541 RDYVLQDFRHGKSTILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGR 595
>gi|229074285|ref|ZP_04207329.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
gi|229094946|ref|ZP_04225949.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
gi|229113900|ref|ZP_04243333.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
gi|423381728|ref|ZP_17359011.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1O-2]
gi|423444415|ref|ZP_17421320.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4X2-1]
gi|423450244|ref|ZP_17427122.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5O-1]
gi|423467853|ref|ZP_17444621.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-1]
gi|423537254|ref|ZP_17513672.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB2-9]
gi|423542981|ref|ZP_17519369.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB4-10]
gi|423543712|ref|ZP_17520070.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB5-5]
gi|423620164|ref|ZP_17595995.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD115]
gi|423626833|ref|ZP_17602608.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD148]
gi|228669561|gb|EEL24970.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
gi|228688479|gb|EEL42354.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
gi|228708837|gb|EEL60966.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
gi|401126252|gb|EJQ33996.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5O-1]
gi|401167096|gb|EJQ74390.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB4-10]
gi|401186994|gb|EJQ94070.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB5-5]
gi|401248889|gb|EJR55208.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD115]
gi|401250188|gb|EJR56490.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD148]
gi|401628655|gb|EJS46489.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1O-2]
gi|402411097|gb|EJV43473.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4X2-1]
gi|402412290|gb|EJV44650.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-1]
gi|402459706|gb|EJV91442.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB2-9]
Length = 529
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|452852964|ref|YP_007494648.1| ATP-dependent RNA helicase rhlE [Desulfovibrio piezophilus]
gi|451896618|emb|CCH49497.1| ATP-dependent RNA helicase rhlE [Desulfovibrio piezophilus]
Length = 373
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 124/269 (46%), Gaps = 33/269 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +LI + +L ++ LV+DE D + + + +K++LA + RQ + SA++
Sbjct: 130 GRLVRLINRGAIRLNTITTLVLDEADRMLDMGF-LPDIKRILAQLP--DKRQNLLFSATM 186
Query: 62 PQHRRFLHNCI---QQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
P + L + I ++ +++ V V + + H F +K L L+
Sbjct: 187 PNDIKKLADGILVNPKRVQEANTVPV---------TSVGHAFYTTQTHLKNDILEKLLSK 237
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRAASL 177
ES +IF + KA N LS K D L+ M+ + R +L
Sbjct: 238 AEHESVLIF----TRTKHKAKN----------LSRKLNKDGYDSTFLQGNMSQSQRQRAL 283
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
RQG ++V+TDIAARGID +H+ N+D+P + Y HR GRTGR S +
Sbjct: 284 NGFRQGQFNIMVATDIAARGIDCDRISHVINYDMPDTVETYTHRIGRTGRAGRSGQ---A 340
Query: 238 TSIITSEELFVLQRYENELKFKSEELTLQ 266
S +T ++ ++ E ++ K E T +
Sbjct: 341 VSFVTRDDKMQIRAIERVMRIKIENNTYE 369
>gi|423480372|ref|ZP_17457062.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6X1-2]
gi|401148764|gb|EJQ56249.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6X1-2]
Length = 534
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|195330800|ref|XP_002032091.1| GM23704 [Drosophila sechellia]
gi|194121034|gb|EDW43077.1| GM23704 [Drosophila sechellia]
Length = 699
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 127/269 (47%), Gaps = 42/269 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI ++ + ++ LV+DE D + + + ++K++ +RQT+ SA+
Sbjct: 406 GRLNDLIMANVIDVSTITYLVLDEADRMLDMGFE-PQIRKVILDIRP--DRQTIMTSATW 462
Query: 62 PQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P R ++ N IQ D+ H ++K + + K+ T+ S +
Sbjct: 463 PPGVRRLAQSYMKNPIQVCVGSLDLAATH--SVKQVIKLMEDDMA------KFNTITSFV 514
Query: 117 QS-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
++ + + IIF G + +A + S L F++ G+ D + R
Sbjct: 515 KNMSSTDKIIIFCG----RKVRADDLSSELTLDGFMTQCIHGNRDQM---------DREQ 561
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKP------ 229
++ +++ G +LV+TD+A+RG+D+ + TH+ N+D PR+ +Y+HR GRTGR
Sbjct: 562 AIADIKSGVVRILVATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRQGTSI 621
Query: 230 --FSDEKWTVTSIITSEELFVLQRYENEL 256
F+ E W + E + +LQ E E+
Sbjct: 622 SFFTREDWG----MAKELIDILQEAEQEV 646
>gi|156720287|dbj|BAF76796.1| Vasa-related protein [Enchytraeus japonensis]
Length = 990
Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 22/230 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFN---SSKQVSSLKKLLASYSSCNNRQTVFAS 58
G L K L ++ LV+DEVD + + + S L + + S NNRQTV S
Sbjct: 654 GRLIDFFGKKRINLCKLKYLVLDEVDRMLDMGFHTAIASILSQGESGMPSVNNRQTVVFS 713
Query: 59 ASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
A+IP+ + L K + D + + V I + ++ ++ K LL ++Q
Sbjct: 714 ATIPEEVQKL----AAKLLREDYIFITVGCIGSANLDIEQYVLLMEQENKRDKLLEIVQK 769
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASL 177
+ I+ V E+ + DF+S +S + + R +L
Sbjct: 770 RGEDKIIVSVEEKR--------------MADFISAFLSQASFPTASIHGNLTQQEREKAL 815
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ R G +LV+T++AARG+D+PE H+ N+D+P +Y+HR GR GR
Sbjct: 816 RDFRSGVSPILVATNVAARGLDIPEVKHVINYDMPPHIEEYVHRIGRPGR 865
>gi|423614480|ref|ZP_17590337.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD107]
gi|401237929|gb|EJR44375.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD107]
Length = 533
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|319407348|emb|CBI80993.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C]
Length = 501
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 117/249 (46%), Gaps = 39/249 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + N V + K+ + RQT+F SA
Sbjct: 168 GRLLDHFERGKLLLVGVEILVIDEADRMLNMGFIPDVERICKV-----TPFTRQTLFFSA 222
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++ ++FLH+ V++ + + R V K K L
Sbjct: 223 TMAPEITQLTKQFLHSP----------VYIEITEASSTAKTITQRLVKSESKPCDKKAVL 272
Query: 113 LSLIQSDAPE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LIQ++ E + IIF + + S+ L +L K + V L +M+
Sbjct: 273 KELIQNEGDELKNAIIFCNRKKDISE----------LFQYL---IKHNFSVGTLHGDMDQ 319
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+SR +L + LL+++D+AARG+D+P +H++N+D+P A DY+HR GRTGR
Sbjct: 320 HSRTNTLASFKNNKFILLIASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKR 379
Query: 231 SDEKWTVTS 239
S + +T+ +
Sbjct: 380 SGKAFTIVT 388
>gi|152974078|ref|YP_001373595.1| DEAD/DEAH box helicase [Bacillus cytotoxicus NVH 391-98]
gi|152022830|gb|ABS20600.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
391-98]
Length = 511
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 125/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 141 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 197
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P+ RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 198 PEPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 251
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 252 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 297
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +
Sbjct: 298 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKTGLAML 354
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E+ L+ E K K + + T
Sbjct: 355 FVTPREMGQLKNIERTTKRKMDRMKAPT 382
>gi|29375434|ref|NP_814588.1| DEAD/DEAH box helicase [Enterococcus faecalis V583]
gi|227520091|ref|ZP_03950140.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX0104]
gi|227554958|ref|ZP_03985005.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
HH22]
gi|229546689|ref|ZP_04435414.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX1322]
gi|229548784|ref|ZP_04437509.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
ATCC 29200]
gi|293383725|ref|ZP_06629632.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis R712]
gi|293388799|ref|ZP_06633292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis S613]
gi|307267925|ref|ZP_07549313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
gi|307271845|ref|ZP_07553113.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
gi|307275145|ref|ZP_07556297.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
gi|307286655|ref|ZP_07566741.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
gi|307290778|ref|ZP_07570673.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
gi|312901614|ref|ZP_07760885.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
gi|312904406|ref|ZP_07763566.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
gi|312907060|ref|ZP_07766056.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
gi|312952884|ref|ZP_07771745.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
gi|312978684|ref|ZP_07790411.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
gi|384512540|ref|YP_005707633.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
gi|422686078|ref|ZP_16744289.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
gi|422689795|ref|ZP_16747899.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
gi|422692134|ref|ZP_16750156.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
gi|422694449|ref|ZP_16752440.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
gi|422696585|ref|ZP_16754542.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
gi|422699736|ref|ZP_16757597.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
gi|422703461|ref|ZP_16761283.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
gi|422707307|ref|ZP_16765002.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
gi|422711628|ref|ZP_16768555.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
gi|422713329|ref|ZP_16770079.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
gi|422717645|ref|ZP_16774329.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
gi|422720386|ref|ZP_16777004.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
gi|422722778|ref|ZP_16779327.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
gi|422726299|ref|ZP_16782750.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
gi|422729834|ref|ZP_16786229.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
gi|422731038|ref|ZP_16787419.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
gi|422735346|ref|ZP_16791620.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
gi|422738996|ref|ZP_16794181.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
gi|424670976|ref|ZP_18107991.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
599]
gi|424676386|ref|ZP_18113259.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV103]
gi|424679344|ref|ZP_18116169.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV116]
gi|424682393|ref|ZP_18119164.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV129]
gi|424686115|ref|ZP_18122786.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV25]
gi|424689249|ref|ZP_18125835.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV31]
gi|424692828|ref|ZP_18129304.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV37]
gi|424696170|ref|ZP_18132529.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV41]
gi|424699415|ref|ZP_18135635.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV62]
gi|424703855|ref|ZP_18139979.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV63]
gi|424705957|ref|ZP_18141971.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV65]
gi|424716207|ref|ZP_18145521.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV68]
gi|424719149|ref|ZP_18148371.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV72]
gi|424722510|ref|ZP_18151560.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV73]
gi|424726330|ref|ZP_18154998.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV81]
gi|424734532|ref|ZP_18163044.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV85]
gi|424746519|ref|ZP_18174750.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV93]
gi|424757333|ref|ZP_18185087.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
R508]
gi|29342894|gb|AAO80658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis V583]
gi|227072435|gb|EEI10398.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX0104]
gi|227175901|gb|EEI56873.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
HH22]
gi|229306092|gb|EEN72088.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
ATCC 29200]
gi|229308195|gb|EEN74182.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX1322]
gi|291078801|gb|EFE16165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis R712]
gi|291081956|gb|EFE18919.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis S613]
gi|306498159|gb|EFM67681.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
gi|306502133|gb|EFM71417.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
gi|306508173|gb|EFM77291.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
gi|306511351|gb|EFM80353.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
gi|306515566|gb|EFM84093.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
gi|310627045|gb|EFQ10328.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
gi|310629187|gb|EFQ12470.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
gi|310632233|gb|EFQ15516.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
gi|311288391|gb|EFQ66947.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
gi|311291302|gb|EFQ69858.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
gi|315027034|gb|EFT38966.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
gi|315029211|gb|EFT41143.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
gi|315032370|gb|EFT44302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
gi|315034370|gb|EFT46302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
gi|315145185|gb|EFT89201.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
gi|315148006|gb|EFT92022.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
gi|315149607|gb|EFT93623.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
gi|315153133|gb|EFT97149.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
gi|315155152|gb|EFT99168.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
gi|315158764|gb|EFU02781.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
gi|315163093|gb|EFU07110.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
gi|315165079|gb|EFU09096.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
gi|315167890|gb|EFU11907.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
gi|315171750|gb|EFU15767.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
gi|315174909|gb|EFU18926.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
gi|315574115|gb|EFU86306.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
gi|315577243|gb|EFU89434.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
gi|315581764|gb|EFU93955.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
gi|327534429|gb|AEA93263.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
gi|402356926|gb|EJU91644.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV103]
gi|402357040|gb|EJU91755.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV116]
gi|402359536|gb|EJU94161.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
599]
gi|402367689|gb|EJV02027.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV129]
gi|402368059|gb|EJV02386.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV25]
gi|402368986|gb|EJV03284.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV31]
gi|402376373|gb|EJV10318.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV62]
gi|402376784|gb|EJV10706.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV37]
gi|402378414|gb|EJV12272.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV41]
gi|402383780|gb|EJV17363.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV63]
gi|402388552|gb|EJV21987.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV68]
gi|402388773|gb|EJV22199.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV65]
gi|402397103|gb|EJV30139.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV72]
gi|402399841|gb|EJV32699.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV81]
gi|402401968|gb|EJV34706.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV73]
gi|402407406|gb|EJV39938.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
R508]
gi|402407938|gb|EJV40436.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV85]
gi|402409246|gb|EJV41678.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV93]
Length = 536
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 116/253 (45%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + KLE+V+ LV+DE D + N + ++K+++ RQT+ SA++
Sbjct: 149 GRLLDHINRRTLKLETVETLVLDEADEMLNMG-FLEDIEKIISQVPE--QRQTLLFSATM 205
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ K HV + A + + +V K+ + L+ P
Sbjct: 206 PPAIK----NIGVKFMKQPE-HVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTP 260
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + YK + +++ R + L +
Sbjct: 261 ELTIVF-GRTKRRVDE--------LARGLEARGYKAEG----IHGDLSQQKRMSVLRSFK 307
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 308 NGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 364
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 365 TPNEMGYLHVIEN 377
>gi|423398827|ref|ZP_17376028.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-1]
gi|423409729|ref|ZP_17386878.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-3]
gi|401646011|gb|EJS63645.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-1]
gi|401652844|gb|EJS70396.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-3]
Length = 531
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|423556774|ref|ZP_17533077.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MC67]
gi|401194089|gb|EJR01081.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MC67]
Length = 535
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKNKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE IIF ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIIF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|423462498|ref|ZP_17439292.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X2-1]
gi|401131792|gb|EJQ39442.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X2-1]
Length = 528
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPDTH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|400290741|ref|ZP_10792768.1| ATP-dependent RNA helicase [Streptococcus ratti FA-1 = DSM 20564]
gi|399921532|gb|EJN94349.1| ATP-dependent RNA helicase [Streptococcus ratti FA-1 = DSM 20564]
Length = 517
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 119/257 (46%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL V+ L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHVETLILDEADEMLN----MGFLEDIEAIISRVPESRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K + HV + A + + ++ + K+ T+ LI
Sbjct: 184 MP-------DAIKRIGVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLIDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASL 177
+ P+ I+F T VD L+ K + +++ R L
Sbjct: 237 EQPDLAIVF--------------GRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + +
Sbjct: 283 RDFKNDNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKHGQS 339
Query: 238 TSIITSEELFVLQRYEN 254
+ ++ E+ LQ EN
Sbjct: 340 ITFVSPNEMGYLQIIEN 356
>gi|310643767|ref|YP_003948525.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|309248717|gb|ADO58284.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
gi|392304504|emb|CCI70867.1| DEAD-box ATP-dependent RNA helicase 42 [Paenibacillus polymyxa M1]
Length = 463
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 123/272 (45%), Gaps = 40/272 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI K+ ++ +VIDEVD +F + +L S + +RQ VF SA+
Sbjct: 130 GRVRELIASKKLKMHNITTIVIDEVDQMFQLGG-AGDVTHILGS--AQRDRQLVFLSAT- 185
Query: 62 PQHRRFLHNCIQQKWTKS--DVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
L+N IQ + D V + ++ + S L H + + ++ K L L++
Sbjct: 186 ------LNNEIQSLAQREMPDYVEIGIDPDQKTASGLEHYYFVSEERDKVDMLRRLVRHF 239
Query: 120 APESGIIFV------GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
P ++FV GE K K G + S G +D + +R
Sbjct: 240 NPRKALVFVNTTNAIGEIEAKLKHMG----------LTTASLYGDADKV---------TR 280
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ L R+ +LV++D+AARG+D+ + +FD + Y+HRAGRTGR
Sbjct: 281 SNVLARFREDKLKVLVASDVAARGLDIEGLEMVIHFDPATDSQAYVHRAGRTGR---MGR 337
Query: 234 KWTVTSIITSEELFVLQRYENELKFKSEELTL 265
K V S++T E F+++++ EL E L
Sbjct: 338 KGLVVSVVTERETFIMRKFSRELGIDIAERAL 369
>gi|423405051|ref|ZP_17382224.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-2]
gi|423479888|ref|ZP_17456602.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6X1-1]
gi|401645694|gb|EJS63344.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-2]
gi|402424280|gb|EJV56466.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6X1-1]
Length = 527
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPDTH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|229171082|ref|ZP_04298680.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
gi|228612412|gb|EEK69636.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
Length = 530
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPDTH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|423456146|ref|ZP_17432999.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X1-1]
gi|401131812|gb|EJQ39461.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X1-1]
Length = 520
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|359397178|ref|ZP_09190228.1| ATP-dependent RNA helicase rhlB [Halomonas boliviensis LC1]
gi|357968972|gb|EHJ91421.1| ATP-dependent RNA helicase rhlB [Halomonas boliviensis LC1]
Length = 424
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 118/257 (45%), Gaps = 25/257 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +K L V+VLV+DE D + S + +K+++ RQT SA+
Sbjct: 178 GRLLDFHQKRDIDLNEVEVLVLDEADRML-SMGFIPDVKRIIRYTPKKEERQTFLFSATF 236
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ N Q WT D HV + + + R + K + L++L+Q ++
Sbjct: 237 TDD---ILNLASQ-WT-LDPAHVEIEVTVENQADIDQRVYLVSDDDKQRLLVNLLQQESF 291
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E ++F G + + +K L D L K +L ++ N R +L R
Sbjct: 292 ERVMVF-GNRRDLVRK---------LDDLLK---KAGVSAAMLSGDVPQNQRIKTLESFR 338
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+A RGI + + +H+ N+ LP DY+HR GRTGR + K S +
Sbjct: 339 EGEIQVLVATDVAGRGIHIEDVSHVINYTLPEDPEDYVHRIGRTGR---AGAKGVSISFV 395
Query: 242 TSEELFVL---QRYENE 255
E+ F L +RY N+
Sbjct: 396 GEEDAFSLPEIERYIND 412
>gi|218895359|ref|YP_002443770.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
gi|228906018|ref|ZP_04069910.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 200]
gi|228937529|ref|ZP_04100171.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228970416|ref|ZP_04131071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228976986|ref|ZP_04137394.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
Bt407]
gi|384184309|ref|YP_005570205.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|402562678|ref|YP_006605402.1| ATP-dependent RNA helicase [Bacillus thuringiensis HD-771]
gi|410672597|ref|YP_006924968.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus thuringiensis
Bt407]
gi|423364241|ref|ZP_17341734.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD022]
gi|423526472|ref|ZP_17502917.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB1-1]
gi|423565415|ref|ZP_17541691.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A1]
gi|452196603|ref|YP_007476684.1| Cold-shock DEAD-box protein A [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|218543277|gb|ACK95671.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
gi|228782733|gb|EEM30903.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
Bt407]
gi|228789302|gb|EEM37226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228822140|gb|EEM68126.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228853621|gb|EEM98386.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 200]
gi|326938018|gb|AEA13914.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401073132|gb|EJP81571.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD022]
gi|401193994|gb|EJR00992.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A1]
gi|401791330|gb|AFQ17369.1| ATP-dependent RNA helicase [Bacillus thuringiensis HD-771]
gi|402456266|gb|EJV88042.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB1-1]
gi|409171726|gb|AFV16031.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus thuringiensis
Bt407]
gi|452101996|gb|AGF98935.1| Cold-shock DEAD-box protein A [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 529
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|75760678|ref|ZP_00740704.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228898976|ref|ZP_04063254.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 4222]
gi|423387287|ref|ZP_17364541.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-2]
gi|434378873|ref|YP_006613517.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-789]
gi|74491828|gb|EAO55018.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228860669|gb|EEN05051.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 4222]
gi|401629250|gb|EJS47075.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-2]
gi|401877430|gb|AFQ29597.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-789]
Length = 521
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
Length = 534
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 123/256 (48%), Gaps = 26/256 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + + + +L+ V+V+++DE D + + + ++ +L RQT SA+I
Sbjct: 139 GRIMDHLRRETLRLDQVRVVILDEADEMLDMGF-IEDVEWILEHVP--RERQTALFSATI 195
Query: 62 PQHRRFLHNCIQQKWTKSDV-VHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P R L Q++ ++ V + +H + +PS + + K + L ++ +A
Sbjct: 196 PPRIRQL----TQRYLRAPVTIAIHPERVT-VPSIAQTVYEVAAHA-KLEALSRILDYEA 249
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P S IIFV +S + A S + + + + G +++ R ++
Sbjct: 250 PTSAIIFVRTKSGADELAHKLQS----LGYAAEAIHG---------DLSQAMRDRAMQRF 296
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R G LL++TD+AARG+D+P +H+ NFD+P Y+HR GRTGR + T ++
Sbjct: 297 RAGQVDLLIATDVAARGLDIPAVSHVINFDIPSDPESYVHRIGRTGR---AGATGTAITL 353
Query: 241 ITSEELFVLQRYENEL 256
I E ++L+ E +
Sbjct: 354 IEPRERWLLRTIERAI 369
>gi|422868322|ref|ZP_16914868.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TX1467]
gi|329575935|gb|EGG57456.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TX1467]
Length = 457
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + KLE+V+ LV+DE D + N + ++K+++ RQT+ SA++
Sbjct: 70 GRLLDHINRRTLKLETVETLVLDEADEMLNMG-FLEDIEKIISQVPE--QRQTLLFSATM 126
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + N I K+ K HV + A + + +V K+ + L+ P
Sbjct: 127 PPA---IKN-IGVKFMKQPE-HVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTP 181
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + YK + +++ R + L +
Sbjct: 182 ELTIVF-GRTKRRVDE--------LARGLEARGYKAEG----IHGDLSQQKRMSVLRSFK 228
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 229 NGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 285
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 286 TPNEMGYLHVIEN 298
>gi|374621917|ref|ZP_09694446.1| DEAD/DEAH box helicase domain-containing protein
[Ectothiorhodospira sp. PHS-1]
gi|373941047|gb|EHQ51592.1| DEAD/DEAH box helicase domain-containing protein
[Ectothiorhodospira sp. PHS-1]
Length = 483
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 120/272 (44%), Gaps = 50/272 (18%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + ++ +F L QVLV+DE D +F+ + ++ LL + RQ++ SA++
Sbjct: 143 GRIIDYFKQKVFDLRRSQVLVLDEADRMFDLGF-IKDVRFLLRRMTPATERQSMLFSATL 201
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLP--------SCLHHRFVI--CGKKMKYQT 111
W ++ + H+N P+ + R VI G + K
Sbjct: 202 -------------SWRVMELAYEHMN--NPVKVQTRDEQVTAERVRQVIYYPGNEEKIPL 246
Query: 112 LLSLIQSDAPESGIIFVGEQSEKSKKA----GNAPSTTLLVDFLSNSYKGSSDVLLLEEE 167
LL +++ +P+ ++FV + K GN LL S DV + +
Sbjct: 247 LLGIMKRSSPDRSMVFVNTKHMAEKVTAWLQGNGIRAALL----------SGDVPQRKRQ 296
Query: 168 MNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
S +V LV+TD+AARG+ +P+ +H++NFDLP+S DY+HR GRTGR
Sbjct: 297 RLLAQFETSEFQV-------LVATDVAARGLHIPDVSHVFNFDLPQSGEDYVHRIGRTGR 349
Query: 228 KPFSDEKWTVTSIITSEELFVLQRYENELKFK 259
+ + S + F L E+ + FK
Sbjct: 350 ---AGAEGDAVSFACEDSAFYLPEIESYIGFK 378
>gi|357637041|ref|ZP_09134916.1| DEAD/DEAH box helicase [Streptococcus macacae NCTC 11558]
gi|357585495|gb|EHJ52698.1| DEAD/DEAH box helicase [Streptococcus macacae NCTC 11558]
Length = 518
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 117/257 (45%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL V+ L++DE D + N + L+ + A S +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLNHVETLILDEADEMLN----MGFLEDIEAIISHVPESRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+P + I++ K D HV + A + + +V + K+ T+ LI
Sbjct: 184 MP-------DAIKRIGVKFMKDPEHVKIAAKELTTDLVDQYYVRVKENEKFDTMTRLIDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASL 177
+ PE I+F T VD L+ K + +++ R L
Sbjct: 237 EQPELSIVF--------------GRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + +LV+TD+AARG+D+ T +YN+D+P+ Y+HR GRTGR + +
Sbjct: 283 RDFKNDNLDILVATDVAARGLDISGVTQVYNYDIPQDPESYVHRIGRTGR---AGKHGQS 339
Query: 238 TSIITSEELFVLQRYEN 254
+ + E+ LQ EN
Sbjct: 340 ITFVAPNEMGYLQIIEN 356
>gi|339625011|ref|ZP_08660800.1| putative ATP-dependent RNA helicase [Fructobacillus fructosus KCTC
3544]
Length = 534
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 118/252 (46%), Gaps = 24/252 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + KL VQ LV+DE D + N + ++ ++A RQT+ SA++
Sbjct: 142 GRLLDHINRKTAKLGHVQTLVLDEADEMLNMGF-LDDIEAIIAQVP--KERQTLLFSATM 198
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R I +K+ ++ V V + A + + F+ C + K+ L I P
Sbjct: 199 PDSIR----RIGEKFM-TNPVMVKIEAKQLTTDLVEQYFIRCRNEEKFDALTRTIDIQEP 253
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
GI+F G + ++ L + Y+ + L ++ R+ L + +
Sbjct: 254 YLGIVF-GRTKRRVEE--------LARGLEARGYRAAG----LHGDLTQQMRSRVLDQFK 300
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
LLV+TD+AARG+D+ + +H+YNFD+P+ Y+HR GRTGR + T +++
Sbjct: 301 SHEINLLVATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGR---AGATGTSVTLV 357
Query: 242 TSEELFVLQRYE 253
E+ L+ E
Sbjct: 358 APNEMDYLRAIE 369
>gi|229083524|ref|ZP_04215862.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
gi|228699778|gb|EEL52425.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
Length = 527
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKMDRMNAPT 370
>gi|30018496|ref|NP_830127.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
gi|29894036|gb|AAP07328.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
Length = 514
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 110 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 166
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 167 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 220
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 221 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 266
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 267 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 323
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 324 FVTPRESGQLKNIERTTKRKMDRMDAPT 351
>gi|166365637|ref|YP_001657910.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
gi|166088010|dbj|BAG02718.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
Length = 479
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 134/268 (50%), Gaps = 39/268 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+++ LES+ +V+DE D + S + +KK+L +S + RQT SA++
Sbjct: 130 GRVIDLLDRKKLHLESLNWVVLDEADEML-SMGFIDDVKKIL--QASPSTRQTACFSATM 186
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHR-FVICGKKMKYQTLLSLIQSD 119
P+ R + N ++ + V V+ + P+ + + ++I K + L L++ +
Sbjct: 187 PREIRDLIANFLKSP------ISVTVSQPQAAPAKIEQKIYLIPRGWTKLKVLQPLLEIE 240
Query: 120 APESGIIFV------GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
ES IIFV E + K ++AG VD Y G+ ++ R
Sbjct: 241 PLESAIIFVRTKQTAAELTSKLQEAGQT------VD----EYHGN---------LSQVQR 281
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ R+G L+V+TDIAARG+D+ +H+ N+DLP +A Y+HR GRTGR + +
Sbjct: 282 ERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGR---AGK 338
Query: 234 KWTVTSIITSEELFVLQRYENELKFKSE 261
T S++ + +L++ E L+ + E
Sbjct: 339 TGTAISLVEPIDRRLLRQIEQRLRQRLE 366
>gi|114048723|ref|YP_739273.1| ATP-dependent RNA helicase SrmB [Shewanella sp. MR-7]
gi|113890165|gb|ABI44216.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 420
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 121/256 (47%), Gaps = 28/256 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + ++K F ESV +L+IDE D + + S++ K +A + +Q + SA++
Sbjct: 132 GRLMEYLDKGKFSAESVDILIIDEADRMLDMG--FSAVVKAIA-LEAQGRKQNMLFSATL 188
Query: 62 PQHR--RFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK-MKYQTLLSLIQS 118
RF + +D + + V+A + + +H + K K+ L L++
Sbjct: 189 EGSGVIRFAREVL------NDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHLLKQ 242
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ + I+FV + S G + F+ +M R +L
Sbjct: 243 EEVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRG-------------DMEQKKRFQALS 289
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+G +L++TD+AARGID+ + +H+ NFD+PRSA Y+HR GRTGR + K T
Sbjct: 290 RFTKGEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGR---AGAKGTAI 346
Query: 239 SIITSEELFVLQRYEN 254
S+ + ++ ++ + E
Sbjct: 347 SLAEAHDMRIVGKIER 362
>gi|30260423|ref|NP_842800.1| DEAD/DEAH box helicase [Bacillus anthracis str. Ames]
gi|47525504|ref|YP_016853.1| DEAD/DEAH box helicase [Bacillus anthracis str. 'Ames Ancestor']
gi|47567484|ref|ZP_00238196.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9241]
gi|49183266|ref|YP_026518.1| DEAD/DEAH box helicase [Bacillus anthracis str. Sterne]
gi|49479130|ref|YP_034574.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|65317675|ref|ZP_00390634.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
str. A2012]
gi|118475995|ref|YP_893146.1| DEAD/DEAH box helicase [Bacillus thuringiensis str. Al Hakam]
gi|165871548|ref|ZP_02216194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0488]
gi|167634144|ref|ZP_02392466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0442]
gi|167640350|ref|ZP_02398615.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0193]
gi|170687759|ref|ZP_02878974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0465]
gi|170707898|ref|ZP_02898348.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0389]
gi|177653423|ref|ZP_02935633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0174]
gi|190567376|ref|ZP_03020290.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Tsiankovskii-I]
gi|196035956|ref|ZP_03103357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
W]
gi|196041156|ref|ZP_03108452.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
gi|196046212|ref|ZP_03113439.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB108]
gi|218901440|ref|YP_002449274.1| ATP-dependent RNA helicase [Bacillus cereus AH820]
gi|225862289|ref|YP_002747667.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB102]
gi|227812915|ref|YP_002812924.1| ATP-dependent RNA helicase [Bacillus anthracis str. CDC 684]
gi|228912978|ref|ZP_04076622.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228925493|ref|ZP_04088587.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228931740|ref|ZP_04094641.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228983493|ref|ZP_04143703.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229089370|ref|ZP_04220646.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
gi|229119903|ref|ZP_04249162.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
gi|229154007|ref|ZP_04282136.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
4342]
gi|229182634|ref|ZP_04309880.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
gi|229604746|ref|YP_002864874.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0248]
gi|254686589|ref|ZP_05150448.1| DEAD/DEAH box helicase [Bacillus anthracis str. CNEVA-9066]
gi|254723571|ref|ZP_05185358.1| DEAD/DEAH box helicase [Bacillus anthracis str. A1055]
gi|254734933|ref|ZP_05192645.1| DEAD/DEAH box helicase [Bacillus anthracis str. Western North
America USA6153]
gi|254739718|ref|ZP_05197411.1| DEAD/DEAH box helicase [Bacillus anthracis str. Kruger B]
gi|254754911|ref|ZP_05206946.1| DEAD/DEAH box helicase [Bacillus anthracis str. Vollum]
gi|301051970|ref|YP_003790181.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
gi|376264267|ref|YP_005116979.1| cold-shock DEAD-box protein A [Bacillus cereus F837/76]
gi|386734107|ref|YP_006207288.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
H9401]
gi|81696998|sp|Q6HPE6.1|CSHA_BACHK RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|81715465|sp|Q81VG0.1|CSHA_BACAN RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|134039177|sp|A0R8U6.1|CSHA_BACAH RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|30253744|gb|AAP24286.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Ames]
gi|47500652|gb|AAT29328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. 'Ames Ancestor']
gi|47555886|gb|EAL14225.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9241]
gi|49177193|gb|AAT52569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Sterne]
gi|49330686|gb|AAT61332.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|118415220|gb|ABK83639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
thuringiensis str. Al Hakam]
gi|164712652|gb|EDR18183.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0488]
gi|167511752|gb|EDR87133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0193]
gi|167530458|gb|EDR93173.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0442]
gi|170127256|gb|EDS96133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0389]
gi|170668286|gb|EDT19034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0465]
gi|172081463|gb|EDT66536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0174]
gi|190561503|gb|EDV15474.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Tsiankovskii-I]
gi|195991325|gb|EDX55292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
W]
gi|196022957|gb|EDX61637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB108]
gi|196028091|gb|EDX66702.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
gi|218539043|gb|ACK91441.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH820]
gi|225790192|gb|ACO30409.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB102]
gi|227005398|gb|ACP15141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. CDC 684]
gi|228600842|gb|EEK58416.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
gi|228629528|gb|EEK86226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
4342]
gi|228663560|gb|EEL19141.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
gi|228693970|gb|EEL47657.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
gi|228776237|gb|EEM24593.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228827920|gb|EEM73653.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228834238|gb|EEM79781.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228846673|gb|EEM91681.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|229269154|gb|ACQ50791.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0248]
gi|300374139|gb|ADK03043.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
gi|364510067|gb|AEW53466.1| Cold-shock DEAD-box protein A [Bacillus cereus F837/76]
gi|384383959|gb|AFH81620.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
H9401]
Length = 528
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKMDRMDAPT 370
>gi|52144993|ref|YP_081836.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
gi|81689748|sp|Q63GX5.1|CSHA_BACCZ RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|51978462|gb|AAU20012.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
Length = 528
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKMDRMDAPT 370
>gi|379726995|ref|YP_005319180.1| cold-shock DEAD-box protein A [Melissococcus plutonius DAT561]
gi|376317898|dbj|BAL61685.1| cold-shock DEAD-box protein A [Melissococcus plutonius DAT561]
Length = 502
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + KLE+++ LV+DE D + N + ++K+++ NRQT+ SA++
Sbjct: 128 GRLLDHLNRRTLKLEAIETLVLDEADEMLNMG-FLEDIEKIISQVPE--NRQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ K + HV + A + + +V K+ + L+ P
Sbjct: 185 PTAIK----NIGIKFMK-NPDHVKIKAKEMTADLIDQYYVRSKDYEKFDIMTRLLDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + YK + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLETRGYKAEG----IHGDLSQQKRMSVLRAFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 287 NGDLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 332
>gi|229028084|ref|ZP_04184235.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
gi|228733237|gb|EEL84068.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
Length = 527
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|425461891|ref|ZP_18841365.1| putative RNA helicase [Microcystis aeruginosa PCC 9808]
gi|443648367|ref|ZP_21129987.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
DIANCHI905]
gi|159030016|emb|CAO90397.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389825195|emb|CCI25254.1| putative RNA helicase [Microcystis aeruginosa PCC 9808]
gi|443335213|gb|ELS49690.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
DIANCHI905]
Length = 479
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 134/268 (50%), Gaps = 39/268 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+++ LES+ +V+DE D + S + +KK+L +S + RQT SA++
Sbjct: 130 GRVIDLLDRKKLHLESLNWVVLDEADEML-SMGFIDDVKKIL--QASPSTRQTACFSATM 186
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHR-FVICGKKMKYQTLLSLIQSD 119
P+ R + N ++ + V V+ + P+ + + ++I K + L L++ +
Sbjct: 187 PREIRDLIANFLKSP------ISVTVSQPQAAPAKIEQKIYMIPRGWTKLKVLQPLLEIE 240
Query: 120 APESGIIFV------GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
ES IIFV E + K ++AG VD Y G+ ++ R
Sbjct: 241 PLESAIIFVRTKQTAAELTSKLQEAGQT------VD----EYHGN---------LSQVQR 281
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ R+G L+V+TDIAARG+D+ +H+ N+DLP +A Y+HR GRTGR + +
Sbjct: 282 ERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGR---AGK 338
Query: 234 KWTVTSIITSEELFVLQRYENELKFKSE 261
T S++ + +L++ E L+ + E
Sbjct: 339 TGTAISLVEPIDRRLLRQIEQRLRQRLE 366
>gi|421511440|ref|ZP_15958310.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
UR-1]
gi|401818518|gb|EJT17718.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
UR-1]
Length = 515
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 93 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 149
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 150 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 203
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 204 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 249
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 250 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 306
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 307 FVTPRESGQLKNIERTTKRKMDRMDAPT 334
>gi|325262198|ref|ZP_08128936.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
gi|324033652|gb|EGB94929.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
Length = 481
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 24/252 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + + + LE V+ LVIDE D + + + +KK+L S + R ++F++
Sbjct: 130 GRIMDHLGRESLNLEKVRWLVIDEADLMLDMG-FIDEVKKIL-SMVPTDCRISLFSATLK 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + + I D+ V +A + + + ++ KY T L ++ ++ P
Sbjct: 188 PEIQELVDEFI------PDMTIVMQSATNEQVAAITEKLYFTDQENKYDTFLEILINENP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+S +IF G + T +L L +L EM R ++ R
Sbjct: 242 QSCMIFCGTRE----------MTNVLFQKLRRRRIFCG---MLHGEMEQRERLKTVDAFR 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G L++TD+AARGID + TH+ N+D P Y+HR GRTGR + + T S++
Sbjct: 289 RGCFRFLIATDVAARGIDFEQITHVVNYDFPSKKETYVHRIGRTGR---NGKCGTAISLV 345
Query: 242 TSEELFVLQRYE 253
T E+ +L++ E
Sbjct: 346 TEEDKRMLRQVE 357
>gi|83594050|ref|YP_427802.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
gi|386350803|ref|YP_006049051.1| DEAD/DEAH box helicase [Rhodospirillum rubrum F11]
gi|83576964|gb|ABC23515.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
gi|346719239|gb|AEO49254.1| DEAD/DEAH box helicase [Rhodospirillum rubrum F11]
Length = 799
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 115/254 (45%), Gaps = 26/254 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L E+ L V+VLVIDE D + + + +++++A RQT+F SA++
Sbjct: 131 GRLIDLFERGSILLRDVKVLVIDEADRMLDMG-FIPDVERIVALLPKI--RQTLFFSATM 187
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ R L + V + + + + ++ K + L L++ +
Sbjct: 188 DKEIRRLADAFLMNPK-----EVRIEPTQKVAETVEQALIMVKASEKREALRQLLRRETV 242
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
+ IF + + VD L S G D+L L +M R L +
Sbjct: 243 TNAFIFCNRKRD--------------VDVLYKSLSGHGFDILALHGDMPQYVRTERLEKF 288
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
++ L+V +D+AARGID+ E +H++NFD+P DY+HR GRTGR +T +
Sbjct: 289 KRAEVQLMVCSDVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYT---L 345
Query: 241 ITSEELFVLQRYEN 254
T E+ L+ EN
Sbjct: 346 ATPEDAKYLRAIEN 359
>gi|443310663|ref|ZP_21040306.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
gi|442779261|gb|ELR89511.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
Length = 465
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 34/233 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+E+ KLES++ V+DE D + S + ++K+L S + ++RQT SA++
Sbjct: 130 GRVIDLLERGNLKLESIKWFVLDEADEML-SMGFIDDVEKILKS--APDSRQTALFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHH-RFVICGKKMKYQTLLSLIQSDA 120
P R L ++ KS V + V K P+ ++ +++ K + L ++++ +
Sbjct: 187 PVTIRHLVA----RFLKSPVT-ITVEQPKAAPTKINQVAYLVPRNWTKARALQAILELED 241
Query: 121 PESGIIFV------GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
PES +IFV E + + + AG++ ++ Y G ++ +R
Sbjct: 242 PESALIFVRTRRTAAELTNQLQNAGHS----------ADEYHG---------DLTQQARE 282
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L R +++TDIAARG+D+ + +H+ N+DLP S Y+HR GRTGR
Sbjct: 283 RLLSRFRNKQVRWVIATDIAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGR 335
>gi|425446720|ref|ZP_18826721.1| putative RNA helicase [Microcystis aeruginosa PCC 9443]
gi|389732942|emb|CCI03221.1| putative RNA helicase [Microcystis aeruginosa PCC 9443]
Length = 479
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 134/268 (50%), Gaps = 39/268 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+++ LES+ +V+DE D + S + +KK+L +S + RQT SA++
Sbjct: 130 GRVIDLLDRKKLHLESLNWVVLDEADEML-SMGFIDDVKKIL--QASPSTRQTACFSATM 186
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHR-FVICGKKMKYQTLLSLIQSD 119
P+ R + N ++ + V V+ + P+ + + ++I K + L L++ +
Sbjct: 187 PREIRDLIANFLKSP------ISVTVSQPQAAPAKIEQKIYMIPRGWTKLKVLQPLLEIE 240
Query: 120 APESGIIFV------GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
ES IIFV E + K ++AG VD Y G+ ++ R
Sbjct: 241 PLESAIIFVRTKQTAAELTSKLQEAGQT------VD----EYHGN---------LSQVQR 281
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ R+G L+V+TDIAARG+D+ +H+ N+DLP +A Y+HR GRTGR + +
Sbjct: 282 ERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGR---AGK 338
Query: 234 KWTVTSIITSEELFVLQRYENELKFKSE 261
T S++ + +L++ E L+ + E
Sbjct: 339 TGTAISLVEPIDRRLLRQIEQRLRQRLE 366
>gi|254515296|ref|ZP_05127357.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR5-3]
gi|219677539|gb|EED33904.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR5-3]
Length = 428
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 117/254 (46%), Gaps = 26/254 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + L+ V+VLV+DE D + + + +K+++ + RQT+ SA+
Sbjct: 180 GRLIDFTGRRDLVLDQVEVLVLDEADRMLDMGF-IPQVKRIVRQTPHKDYRQTLLFSAT- 237
Query: 62 PQHRRFLHNCIQ--QKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
F + I ++WT +D V V + + R + + +++ L++L++SD
Sbjct: 238 -----FTQDIINLSEQWT-TDAVTVEIEPDHVATDSVDQRIYLASSEERFRILVNLLRSD 291
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
S I+F + + + K S +L E+ R +L +
Sbjct: 292 DATSVIVFANRRDQVRR-------------LYERLRKASITCGMLSGEIAQAKRTKTLDQ 338
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+A RGI + +H+ N++LP DY+HR GRTGR S T S
Sbjct: 339 FKKGEISVLVATDVAGRGIHVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGAS---GTSIS 395
Query: 240 IITSEELFVLQRYE 253
+ ++ F+L E
Sbjct: 396 FASEDDAFLLPDLE 409
>gi|126699723|ref|YP_001088620.1| ATP-dependent RNA helicase [Clostridium difficile 630]
gi|115251160|emb|CAJ68991.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
Length = 381
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 136/267 (50%), Gaps = 28/267 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI++ K +++ +V+DEVD L N K ++ ++ ++ ++ +RQ + SAS+
Sbjct: 132 GRVLDLIKQKKLKSHNIKTIVLDEVDNLLNG-KNITCIEDII--RTTLRDRQIIGCSASL 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNA-IKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+ + + +++ +++ + I P ++H +++ + K+ L + +
Sbjct: 189 TDSTIKICDKLMKEF---EIIKTKEKSQINP---NINHSYLLGEIRDKFTFLRKALAATN 242
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRAASLLE 179
P+ I+FV N + +LV L+ ++YK +E+E R ++ +
Sbjct: 243 PKKAIVFVN----------NEKNIEVLVSKLNYHNYKAIGIFGNMEKE----DRKNAINK 288
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +L++TD++ARG+D+ + +H++N D P+S +YLHR GRT R + S
Sbjct: 289 FKLGKAKILITTDLSARGLDIVDVSHVFNLDFPKSKNEYLHRCGRTAR---GNRSGNTIS 345
Query: 240 IITSEELFVLQRYENELKFKSEELTLQ 266
IIT +EL +++ + E TLQ
Sbjct: 346 IITKKELDIIKDLQKEFNIVITPKTLQ 372
>gi|444311371|ref|ZP_21146981.1| DEAD/DEAH box helicase [Ochrobactrum intermedium M86]
gi|443485287|gb|ELT48079.1| DEAD/DEAH box helicase [Ochrobactrum intermedium M86]
Length = 484
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 117/249 (46%), Gaps = 39/249 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P +FLH+ T+ +V A + R V KK K L
Sbjct: 187 TMPPEITKLTEQFLHSP-----TRVEVAKASSTA-----KTVTQRLVKSTKKDWDKRAVL 236
Query: 113 LSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LI++ D ++ IIF + + S+ L + + + L +M+
Sbjct: 237 RDLIRAEGDTLKNAIIFCNRKKDVSE---------LFRSLTRHEFNAGA----LHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R L + G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR
Sbjct: 284 RARMTMLSNFKDGKLQLLVASDVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTS 239
S + +T+ +
Sbjct: 344 SGKAFTIVT 352
>gi|425471042|ref|ZP_18849902.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9701]
gi|389883157|emb|CCI36432.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9701]
Length = 479
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 134/268 (50%), Gaps = 39/268 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+++ LES+ +V+DE D + S + +KK+L +S + RQT SA++
Sbjct: 130 GRVIDLLDRKKLHLESLNWVVLDEADEML-SMGFIDDVKKIL--QASPSTRQTACFSATM 186
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHR-FVICGKKMKYQTLLSLIQSD 119
P+ R + N ++ + V V+ + P+ + + ++I K + L L++ +
Sbjct: 187 PREIRDLIANFLKSP------ISVTVSQPQAAPAKIEQKIYLIPRGWTKLKVLQPLLEIE 240
Query: 120 APESGIIFV------GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
ES IIFV E + K ++AG VD Y G+ ++ R
Sbjct: 241 PLESAIIFVRTKQTAAELTSKLQEAGQT------VD----EYHGN---------LSQVQR 281
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ R+G L+V+TDIAARG+D+ +H+ N+DLP +A Y+HR GRTGR + +
Sbjct: 282 ERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGR---AGK 338
Query: 234 KWTVTSIITSEELFVLQRYENELKFKSE 261
T S++ + +L++ E L+ + E
Sbjct: 339 TGTAISLVEPIDRRLLRQIEQRLRQRLE 366
>gi|163750312|ref|ZP_02157553.1| ATP-dependent RNA helicase SrmB [Shewanella benthica KT99]
gi|161329984|gb|EDQ00969.1| ATP-dependent RNA helicase SrmB [Shewanella benthica KT99]
Length = 421
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 125/257 (48%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNRQTVFASA 59
G L + ++K F E V+V VIDE D + + S V +L + S +QT+ SA
Sbjct: 143 GRLMEYLDKGNFNAEEVEVFVIDEADRMLDMGFSAAVETL-----AIESVGRKQTMLFSA 197
Query: 60 SIPQHR--RFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKMKYQTLLSLI 116
++ RF H + +D V V A + + +H I K+ K+ L +++
Sbjct: 198 TLEGSDVGRFSHQLL------TDPVKVEAEAPRSEKAKIHQWIHIADNKEHKFAMLCNIL 251
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+ + I+FV K+++ + L + ++ S+ + +M R +
Sbjct: 252 RQEDVTRTIVFV-----KTREGVASLEGLLQREGITCSF--------MRGDMEQKQRFQA 298
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L +G +L++TD+AARGID+ +H+ NFD+PRSA Y+HR GRT R + K T
Sbjct: 299 LGRFTKGEVSVLLATDVAARGIDVDNISHVINFDMPRSADTYVHRIGRTAR---AGAKGT 355
Query: 237 VTSIITSEELFVLQRYE 253
S++ + ++ V+ + E
Sbjct: 356 AISLVEAHDIRVVGKIE 372
>gi|339482174|ref|YP_004693960.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338804319|gb|AEJ00561.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. Is79A3]
Length = 460
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 121/257 (47%), Gaps = 26/257 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I++ + +++LV+DE D + + + ++ + A+ + RQT+ SA+
Sbjct: 133 GRLIDHIQRGRIDFKRLEMLVLDEADRMLDMGF-IDDVETIAAATPAT--RQTLLFSAT- 188
Query: 62 PQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRF-VICGKKMKYQTLLSLIQS 118
L I + K + V + K + R + K + L +++
Sbjct: 189 ------LDGAIDKVAAKLLKSPKRIQVASQKARLDNIEQRLHYVDDMSHKNRLLNHVLRD 242
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+A + I+F + + + TL + + Y ++ L +MN R +L
Sbjct: 243 EALKQAIVFTATKRD---------ADTLADNLYAQGYAAAA----LHGDMNQRERTRTLT 289
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
++R GG +LV+TD+AARGID+ + TH+ NFDLP+ A DY+HR GRTGR + +
Sbjct: 290 KLRSGGLRVLVATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRTGRAGAAGVAVSFA 349
Query: 239 SIITSEELFVLQRYENE 255
S S L ++RY +
Sbjct: 350 SNRDSAHLTKIERYTGQ 366
>gi|296446324|ref|ZP_06888270.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
OB3b]
gi|296256225|gb|EFH03306.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
OB3b]
Length = 419
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 120/263 (45%), Gaps = 42/263 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L ++ L ++++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 131 GRLLDFFDRGKLLLTNIEILVIDEADRMLDMGFIPDIERICKLVPF-----TRQTLFFSA 185
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVIC-GKKMKYQTLL 113
++P FLHN V + V + + V G K +TL
Sbjct: 186 TMPPEITRLTEAFLHNP----------VRIEVARASSTAATIRQALVATHGHAEKRETLR 235
Query: 114 SLIQ-SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFN 171
L++ ++ ++ IIF + + V L S K L +M+
Sbjct: 236 RLLRGAENFKNAIIFCNRKRD--------------VAILHRSLDKHGFSAGALHGDMDQP 281
Query: 172 SRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS 231
+R ASL + G LLV +D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR +
Sbjct: 282 ARMASLDAFKNGDVALLVCSDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGR---A 338
Query: 232 DEKWTVTSIITSEELFVLQRYEN 254
T +++T E+ L + E
Sbjct: 339 GRSGTAVTLVTGEDRKYLDQIET 361
>gi|228950768|ref|ZP_04112897.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229067991|ref|ZP_04201304.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
gi|229077588|ref|ZP_04210230.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
gi|229176827|ref|ZP_04304229.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
gi|423422457|ref|ZP_17399488.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-2]
gi|423433901|ref|ZP_17410882.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus
BAG4X12-1]
gi|423507747|ref|ZP_17484314.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HD73]
gi|449086891|ref|YP_007419332.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|228606719|gb|EEK64138.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
gi|228705727|gb|EEL58071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
gi|228715129|gb|EEL66992.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
gi|228808908|gb|EEM55398.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|401119847|gb|EJQ27653.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-2]
gi|401128051|gb|EJQ35755.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus
BAG4X12-1]
gi|402443146|gb|EJV75059.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HD73]
gi|449020648|gb|AGE75811.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. HD73]
Length = 525
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKMDRMDAPT 370
>gi|206972279|ref|ZP_03233226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH1134]
gi|218235804|ref|YP_002365074.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
gi|228919172|ref|ZP_04082546.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|229148635|ref|ZP_04276889.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
gi|365163836|ref|ZP_09359936.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus sp.
7_6_55CFAA_CT2]
gi|423415878|ref|ZP_17392998.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3O-2]
gi|423428328|ref|ZP_17405332.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4O-1]
gi|423578634|ref|ZP_17554745.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD014]
gi|423638228|ref|ZP_17613880.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD156]
gi|206732853|gb|EDZ50028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH1134]
gi|218163761|gb|ACK63753.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
gi|228634893|gb|EEK91468.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
gi|228840483|gb|EEM85750.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|363614642|gb|EHL66125.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus sp.
7_6_55CFAA_CT2]
gi|401094716|gb|EJQ02789.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3O-2]
gi|401126650|gb|EJQ34386.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4O-1]
gi|401220492|gb|EJR27125.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD014]
gi|401271731|gb|EJR77736.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD156]
Length = 533
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKMDRMDAPT 370
>gi|427729699|ref|YP_007075936.1| DNA/RNA helicase [Nostoc sp. PCC 7524]
gi|427365618|gb|AFY48339.1| DNA/RNA helicase, superfamily II [Nostoc sp. PCC 7524]
Length = 510
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 130/269 (48%), Gaps = 25/269 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+E+ KL+ V+ V+DE D + S + ++++L+ + RQT SA++
Sbjct: 130 GRVIDLLERGSLKLDQVRWFVLDEADEML-SMGFIDDVERILSQ--APQERQTALFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHH-RFVICGKKMKYQTLLSLIQSDA 120
P R L N K+ +S V V V K P+ ++ ++I K + L +++ +
Sbjct: 187 PPSIRMLVN----KFLRSPVT-VTVEQPKATPNKINQVAYLIPRHWTKAKALQPILEMED 241
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE+ +IFV + A S + Y G +++ +R L
Sbjct: 242 PETALIFV----RTRRTAAELTSQLQAAGHSVDEYHG---------DLSQQARERLLTRF 288
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R +V+TDIAARG+D+ + +H+ NFDLP S Y+HR GRTGR + ++ T ++
Sbjct: 289 RNRQVRWVVATDIAARGLDVDQLSHVINFDLPDSVETYVHRIGRTGR---AGKEGTAITL 345
Query: 241 ITSEELFVLQRYENELKFKSEELTLQTQC 269
+ E Q +E ++ + L++ T+
Sbjct: 346 VQPFERRKQQIFERHVRQNWQLLSIPTRA 374
>gi|421641007|ref|ZP_16081575.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
BF1]
gi|403391874|gb|EJY89142.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
BF1]
Length = 492
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 93 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 149
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 150 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 203
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 204 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 249
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 250 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 306
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 307 FVTPRESGQLKNIERTTKRKMDRMDAPT 334
>gi|395793251|ref|ZP_10472656.1| hypothetical protein MEI_01277 [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423713021|ref|ZP_17687281.1| hypothetical protein ME1_00027 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395424647|gb|EJF90827.1| hypothetical protein ME1_00027 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395431565|gb|EJF97583.1| hypothetical protein MEI_01277 [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 459
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 25/238 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L L+ + L + LV+DE D + + V + KLL RQT SA
Sbjct: 138 GRLRDLVREKCINLSQSRFLVLDEADRMLDMGFINDVRHIAKLLH-----QERQTALFSA 192
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P+ L C+ +D V + V+ + + + + K L L+ +
Sbjct: 193 TMPKEITGLAKCLL-----NDPVKIEVSPQGTTAAEIIQKLYCVSTREKKNVLCKLLTNP 247
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
S I+F ++K +A + +L K V + + N+R ++L
Sbjct: 248 VFASVIVFT-----RTKHGADAVTRSL--------EKSGYSVATIHGNKSQNARQSALKA 294
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
R+ +LV+TDIAARGID+P +H+ N+DLP A Y+HR GRTGR S E T+
Sbjct: 295 FRERAVQILVATDIAARGIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEAITL 352
>gi|389857075|ref|YP_006359318.1| superfamily II DNA/RNA helicase [Streptococcus suis ST1]
gi|353740793|gb|AER21800.1| superfamily II DNA/RNA helicase [Streptococcus suis ST1]
Length = 514
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 112/239 (46%), Gaps = 23/239 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ V+ L++DE D + N + L + A +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDGVETLILDEADEMLN----MGFLDDIEAIIERVPESRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P+ + I K+ K + HV + A + + ++ + K+ T+ L+ D
Sbjct: 184 MPEPIK----RIGVKFMK-EPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLMDVDQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F ++ L F + G +++ N R + +
Sbjct: 239 PELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRVIRDF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T S
Sbjct: 286 KNDQIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVS 344
>gi|288554498|ref|YP_003426433.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
gi|288545658|gb|ADC49541.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
Length = 502
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 23/227 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + +L V+ +V+DE D + N + ++ +L+ N RQT+ SA++
Sbjct: 129 GRLMDHMRRKTIRLGQVETVVLDEADEMLNMGF-IEDIETILSEVP--NERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + Q ++ ++ V + + ++V ++ K+ TL I P
Sbjct: 186 PKR---IEKLAQTFMSEPKLIAVKSKEV--TMENIEQQYVEVHERQKFDTLCRFIDIHTP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRAASLLEV 180
E I+F T VD LS + K + ++N R + L +
Sbjct: 241 ELAIVF--------------GRTKRRVDELSEALTKRGYRAEGIHGDLNQAKRDSVLRKF 286
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ G +LV+TD+AARG+D+ TH+YNFDLP+ Y+HR GRTGR
Sbjct: 287 KNGLVDVLVATDVAARGLDITGVTHVYNFDLPQDPESYVHRIGRTGR 333
>gi|254756954|ref|ZP_05208982.1| DEAD/DEAH box helicase [Bacillus anthracis str. Australia 94]
Length = 516
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKMDRMDAPT 370
>gi|423083990|ref|ZP_17072518.1| DEAD/DEAH box helicase [Clostridium difficile 002-P50-2011]
gi|423087310|ref|ZP_17075698.1| DEAD/DEAH box helicase [Clostridium difficile 050-P50-2011]
gi|357543788|gb|EHJ25803.1| DEAD/DEAH box helicase [Clostridium difficile 002-P50-2011]
gi|357544728|gb|EHJ26715.1| DEAD/DEAH box helicase [Clostridium difficile 050-P50-2011]
Length = 381
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 136/267 (50%), Gaps = 28/267 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI++ K +++ +V+DEVD L N K ++ ++ ++ ++ +RQ + SAS+
Sbjct: 132 GRVLDLIKQKKLKSHNIKTIVLDEVDNLLNG-KNITCIEDII--RTTLRDRQIIGCSASL 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNA-IKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+ + + +++ +++ + I P ++H +++ + K+ L + +
Sbjct: 189 TDSTIKICDKLMKEF---EIIKTKEKSQINP---NINHSYLLGEIRDKFTFLRKALAATN 242
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRAASLLE 179
P+ I+FV N + +LV L+ ++YK +E+E R ++ +
Sbjct: 243 PKKAIVFVN----------NEKNIEVLVSKLNYHNYKAIGIFGNMEKE----DRKNAINK 288
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +L++TD++ARG+D+ + +H++N D P+S +YLHR GRT R + S
Sbjct: 289 FKLGKAKILITTDLSARGLDIVDVSHVFNLDFPKSKNEYLHRCGRTAR---GNRSGNTIS 345
Query: 240 IITSEELFVLQRYENELKFKSEELTLQ 266
IIT +EL +++ + E TLQ
Sbjct: 346 IITKKELDIIKDLQKEFNIVITPKTLQ 372
>gi|366087286|ref|ZP_09453771.1| ATP-dependent RNA helicase [Lactobacillus zeae KCTC 3804]
Length = 502
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 114/254 (44%), Gaps = 26/254 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KLE + LV+DE D + + + ++K++ + RQT+ SA++
Sbjct: 128 GRILDHIGRHTLKLEHLDTLVLDEADEMLDMGF-IDDIEKIVEQMPT--ERQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L N K+ KS VV V + A + + +V K+ + L P
Sbjct: 185 PAAIMRLTN----KFMKSPVV-VKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
+ +IF T VD L+ K + ++ R + L +
Sbjct: 240 DLALIF--------------GRTKRRVDELTRGLKARGYRAEGIYGDLTQQKRMSVLRQF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + K +
Sbjct: 286 KSGQLDFLVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGR---AGHKGVSVTF 342
Query: 241 ITSEELFVLQRYEN 254
+T E+ L E+
Sbjct: 343 VTPNEIEYLHTIED 356
>gi|86148322|ref|ZP_01066616.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222]
gi|85833877|gb|EAQ52041.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222]
Length = 428
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 127/267 (47%), Gaps = 34/267 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNRQTVFASA 59
G L LI + KL+ V+ LV+DE D + + ++++ ++ KLL S +QT+ SA
Sbjct: 146 GRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPS-----KKQTLLFSA 200
Query: 60 SIPQHRRFL-HNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+ P+ + L H + +D + V + + S L R K K L LIQ
Sbjct: 201 TFPEQVKTLTHELL------NDPIEVQLQSANA--STLVQRVFEVEKGRKTALLAHLIQQ 252
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+IFV ++ S L D L YK + + SR L
Sbjct: 253 HEWRQALIFVNAKN----------SCEHLADKL---YKRGIIAEVFHGDKGQGSRTRILE 299
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +L++TDIAARG+D+ + + NFDLPRS DY+HR GR+GR + E
Sbjct: 300 DFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGR---AGEVGLAL 356
Query: 239 SIITSEEL--FVLQRYENELKFKSEEL 263
S+I E+ F + +N+++ + E++
Sbjct: 357 SLIDHEDYHHFTIIEKKNKIRLEREQI 383
>gi|408421739|ref|YP_006763153.1| ATP-dependent RNA helicase [Desulfobacula toluolica Tol2]
gi|405108952|emb|CCK82449.1| predicted ATP-dependent RNA helicase [Desulfobacula toluolica Tol2]
Length = 411
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 112/228 (49%), Gaps = 24/228 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + LI + L+ V LV+DE D + + K +S++KK L QT+F SA
Sbjct: 133 GRMFDLISQGAISLKHVDTLVLDEADQMLDLGFIKDISAVKKKL-----IQRHQTLFFSA 187
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+I + + L KS + + ++ P+ + H FVI + + L D
Sbjct: 188 TINKEIKKLAFS----QVKSSAIRIQISPDDPVSKNVSH-FVIFVEMDDKRFFLRRFVHD 242
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
P++ II ++++ A L D ++++ L E + R + +
Sbjct: 243 NPKTKIIVFVRTRVRAERVAKA----LERDNITSA--------TLHGEKDQKDRTSVMNL 290
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+QGG +L++TD++ARGID+P+ ++ N+DLP + +Y+HR GRTGR
Sbjct: 291 FKQGGINILIATDVSARGIDIPDVKYVINYDLPEKSENYVHRVGRTGR 338
>gi|325983359|ref|YP_004295761.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
AL212]
gi|325532878|gb|ADZ27599.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
Length = 457
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 119/257 (46%), Gaps = 26/257 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I++ + +Q+LV+DE D + + + ++ + A+ + RQT+ SA+
Sbjct: 133 GRLIDHIQRGRIDFKRLQMLVLDEADRMLDMGF-IEDVETIAAATPAT--RQTLLFSAT- 188
Query: 62 PQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLS-LIQS 118
L N I + K + V++ K + R LL +++
Sbjct: 189 ------LDNAIDRVAAKLLKTPQRIQVSSPKSKLDNIEQRLHYADDMSHKNRLLDHVLRD 242
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ + I+F + + + +L + Y ++ L +MN R +L
Sbjct: 243 ETLKQAIVFTATKRD---------ADSLADTLYAQGYAAAA----LHGDMNQRERNRTLT 289
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+R GG +LV+TD+AARGID+ + TH+ NFDLP+ A DY+HR GRTGR + +
Sbjct: 290 RLRNGGLRVLVATDVAARGIDVADITHVINFDLPKFAEDYVHRIGRTGRAGAAGIAVSFA 349
Query: 239 SIITSEELFVLQRYENE 255
S+ S L ++RY +
Sbjct: 350 SVKDSMHLTKIERYTGQ 366
>gi|239831816|ref|ZP_04680145.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
gi|239824083|gb|EEQ95651.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
Length = 484
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 117/249 (46%), Gaps = 39/249 (15%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L E+ L V++LVIDE D + + + + KL+ RQT+F SA
Sbjct: 132 GRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF-----TRQTLFFSA 186
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKM--KYQTL 112
++P +FLH+ T+ +V A + R V KK K L
Sbjct: 187 TMPPEITKLTEQFLHSP-----TRVEVAKASSTA-----KTVTQRLVKSTKKDWDKRAVL 236
Query: 113 LSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
LI++ D ++ IIF + + S+ L + + + L +M+
Sbjct: 237 RDLIRAEGDTLKNAIIFCNRKKDVSE---------LFRSLTRHEFNAGA----LHGDMDQ 283
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
+R L + G LLV++D+AARG+D+P+ +H++NFD+P + DY+HR GRTGR
Sbjct: 284 RARMTMLSNFKDGKLQLLVASDVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGR 343
Query: 231 SDEKWTVTS 239
S + +T+ +
Sbjct: 344 SGKAFTIVT 352
>gi|389579132|ref|ZP_10169159.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
gi|389400767|gb|EIM62989.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
Length = 422
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 127/253 (50%), Gaps = 25/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ F L++V++LV+DE D +F+ + +++++ + RQ++ SA++
Sbjct: 129 GRLLDLLNDRSFSLQAVEMLVLDEADHMFDKGF-LPDIRRIIKQLPT--KRQSLVFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R L I + V V +N +P+ + H F + K+ K L ++I+ +
Sbjct: 186 PEEIRHLAENIL-----INPVTVQINHTQPVLAISHVLFQVA-KEQKTSLLKTIIKEEEM 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+S ++F K+K +L + YK +S ++ ++ R +L +
Sbjct: 240 KSTLVFT-RTKHKAK--------SLALVLQKAGYKAAS----IQGNLSQLKRQEALNGFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TDIAARGID+ +H+ N+D+P + Y HR GRTGR + + +
Sbjct: 287 TGEFKILVATDIAARGIDVKGISHVINYDVPDTPETYTHRTGRTGRAERAGQAFIFAG-- 344
Query: 242 TSEELFVLQRYEN 254
E++ ++ R E+
Sbjct: 345 -QEDIKIISRIEH 356
>gi|146319228|ref|YP_001198940.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33]
gi|146321430|ref|YP_001201141.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33]
gi|253752268|ref|YP_003025409.1| DEAD box helicase family protein [Streptococcus suis SC84]
gi|253754094|ref|YP_003027235.1| DEAD box helicase family protein [Streptococcus suis P1/7]
gi|253756028|ref|YP_003029168.1| DEAD/DEAH box helicase [Streptococcus suis BM407]
gi|386580466|ref|YP_006076871.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
gi|386582541|ref|YP_006078945.1| superfamily II DNA/RNA helicase [Streptococcus suis SS12]
gi|386588666|ref|YP_006085067.1| superfamily II DNA/RNA helicase [Streptococcus suis A7]
gi|403062015|ref|YP_006650231.1| superfamily II DNA/RNA helicase [Streptococcus suis S735]
gi|145690034|gb|ABP90540.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33]
gi|145692236|gb|ABP92741.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33]
gi|251816557|emb|CAZ52193.1| DEAD box helicase family protein [Streptococcus suis SC84]
gi|251818492|emb|CAZ56321.1| DEAD box helicase family protein [Streptococcus suis BM407]
gi|251820340|emb|CAR46890.1| DEAD box helicase family protein [Streptococcus suis P1/7]
gi|319758658|gb|ADV70600.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
gi|353734687|gb|AER15697.1| superfamily II DNA/RNA helicase [Streptococcus suis SS12]
gi|354985827|gb|AER44725.1| superfamily II DNA/RNA helicase [Streptococcus suis A7]
gi|402809341|gb|AFR00833.1| superfamily II DNA/RNA helicase [Streptococcus suis S735]
Length = 514
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 112/239 (46%), Gaps = 23/239 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ V+ L++DE D + N + L + A +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDGVETLILDEADEMLN----MGFLDDIEAIIERVPESRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P+ + I K+ K + HV + A + + ++ + K+ T+ L+ D
Sbjct: 184 MPEPIK----RIGVKFMK-EPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLMDVDQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F ++ L F + G +++ N R + +
Sbjct: 239 PELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRVIRDF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T S
Sbjct: 286 KNDQIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVS 344
>gi|94499046|ref|ZP_01305584.1| ATP-dependent RNA helicase [Bermanella marisrubri]
gi|94428678|gb|EAT13650.1| ATP-dependent RNA helicase [Oceanobacter sp. RED65]
Length = 475
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 118/259 (45%), Gaps = 24/259 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ I L+ V++LVIDE D + + + LK+++ + RQT SA+
Sbjct: 232 GRLLDYLQQGIVYLDQVEMLVIDEADRMLDMGF-IPDLKRIIRGTPEKSIRQTQLFSATY 290
Query: 62 PQHRRFLHNCIQQKWT-KSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P + + + WT K + V + ++ + +F+ + K L+ ++ +
Sbjct: 291 P----YDVVALSESWTYKPEQVEIEPESV--ATETVKQQFISLQETQKDNALIEYLEKEN 344
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
IIF + + L D L+ K LLL E+ R +L
Sbjct: 345 TGKSIIFANRRD----------TCRDLADRLN---KRGVKALLLSGEVAQAKRMKTLDRF 391
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G +LV+TD+A RGI + TH++N++LP DY+HR GRTGR + E T +
Sbjct: 392 KSEDGAVLVATDVAGRGIHVDGITHVFNYNLPDDPEDYVHRIGRTGR---AGESGTAITF 448
Query: 241 ITSEELFVLQRYENELKFK 259
I E + L E+ L K
Sbjct: 449 IDEYEAYGLMDLESYLGKK 467
>gi|228956670|ref|ZP_04118461.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|423632143|ref|ZP_17607889.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD154]
gi|228803008|gb|EEM49835.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401262038|gb|EJR68185.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD154]
Length = 517
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKMDRMDAPT 370
>gi|229041132|ref|ZP_04189892.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
gi|423646358|ref|ZP_17621928.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD169]
gi|228727214|gb|EEL78411.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
gi|401287656|gb|EJR93433.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD169]
Length = 525
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKMDRMDAPT 370
>gi|229107908|ref|ZP_04237540.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
gi|229125742|ref|ZP_04254771.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-Cer4]
gi|229143032|ref|ZP_04271470.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST24]
gi|296501059|ref|YP_003662759.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
gi|423590490|ref|ZP_17566552.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD045]
gi|423644958|ref|ZP_17620574.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD166]
gi|423653166|ref|ZP_17628465.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD200]
gi|146291075|sp|Q81IT9.2|CSHA_BACCR RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|228640440|gb|EEK96832.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST24]
gi|228657715|gb|EEL13524.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-Cer4]
gi|228675551|gb|EEL30763.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
gi|296322111|gb|ADH05039.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
gi|401220472|gb|EJR27106.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD045]
gi|401268292|gb|EJR74342.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD166]
gi|401302693|gb|EJS08265.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD200]
Length = 533
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKMDRMDAPT 370
>gi|17228718|ref|NP_485266.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
gi|17130570|dbj|BAB73180.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
Length = 513
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 131/269 (48%), Gaps = 25/269 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+E+ KL+ V+ V+DE D + S + ++K+L+ + +RQT SA++
Sbjct: 130 GRVIDLLERGNLKLDQVKWFVLDEADEML-SMGFIDDVEKILSQ--APQDRQTALFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHH-RFVICGKKMKYQTLLSLIQSDA 120
P R L N K+ +S V V V K P+ ++ ++I K + L +++ +
Sbjct: 187 PPSIRMLVN----KFLRSPVT-VTVEQPKATPNKINQVAYLIPRHWTKARALQPILEMED 241
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE+ +IFV + A S + Y G +++ +R L
Sbjct: 242 PETALIFV----RTRRTAAELTSQLQAAGHSVDEYHG---------DLSQQARERLLTRF 288
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R +V+TDIAARG+D+ + +H+ N+DLP S Y+HR GRTGR + ++ T ++
Sbjct: 289 RSRQVRWVVATDIAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGR---AGKEGTAITL 345
Query: 241 ITSEELFVLQRYENELKFKSEELTLQTQC 269
+ E Q +E ++ + L++ T+
Sbjct: 346 VQPFERRKQQIFERHVRQNWQLLSIPTRA 374
>gi|84392274|ref|ZP_00991701.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
gi|84376394|gb|EAP93274.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
Length = 428
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 127/267 (47%), Gaps = 34/267 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNRQTVFASA 59
G L LI + KL+ V+ LV+DE D + + ++++ ++ KLL S +QT+ SA
Sbjct: 146 GRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPS-----KKQTLLFSA 200
Query: 60 SIPQHRRFL-HNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
+ P+ + L H + +D + V + + S L R K K L LIQ
Sbjct: 201 TFPEQVKTLTHELL------NDPIEVQLQSANA--STLVQRVFEVEKGRKTALLAHLIQQ 252
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+IFV ++ S L D L YK + + SR L
Sbjct: 253 HEWRQALIFVNAKN----------SCEHLADKL---YKRGIIAEVFHGDKGQGSRTRILE 299
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ + G +L++TDIAARG+D+ + + NFDLPRS DY+HR GR+GR + E
Sbjct: 300 DFKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGR---AGEVGLAL 356
Query: 239 SIITSEEL--FVLQRYENELKFKSEEL 263
S+I E+ F + +N+++ + E++
Sbjct: 357 SLIDHEDYHHFTIIEKKNKIRLEREQI 383
>gi|42779348|ref|NP_976595.1| DEAD/DEAH box helicase [Bacillus cereus ATCC 10987]
gi|206977074|ref|ZP_03237974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217957807|ref|YP_002336351.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus cereus
AH187]
gi|222094007|ref|YP_002528058.1| dead/deah box helicase [Bacillus cereus Q1]
gi|229137077|ref|ZP_04265701.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST26]
gi|229194624|ref|ZP_04321421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
gi|375282337|ref|YP_005102772.1| ATP-dependent RNA helicase [Bacillus cereus NC7401]
gi|384178162|ref|YP_005563924.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|402554174|ref|YP_006595445.1| DEAD/DEAH box helicase [Bacillus cereus FRI-35]
gi|423357187|ref|ZP_17334786.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus IS075]
gi|423376168|ref|ZP_17353482.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus AND1407]
gi|423572348|ref|ZP_17548555.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A12]
gi|423577914|ref|ZP_17554033.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-D12]
gi|423607941|ref|ZP_17583834.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD102]
gi|81700027|sp|Q73EU1.1|CSHA_BACC1 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|42735263|gb|AAS39203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
ATCC 10987]
gi|206744723|gb|EDZ56130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217064501|gb|ACJ78751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH187]
gi|221238056|gb|ACM10766.1| DEAD/DEAH box helicase [Bacillus cereus Q1]
gi|228588845|gb|EEK46866.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
gi|228646384|gb|EEL02594.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST26]
gi|324324246|gb|ADY19506.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358350860|dbj|BAL16032.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NC7401]
gi|401075815|gb|EJP84184.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus IS075]
gi|401089159|gb|EJP97331.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus AND1407]
gi|401197715|gb|EJR04643.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A12]
gi|401203960|gb|EJR10791.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-D12]
gi|401239515|gb|EJR45942.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD102]
gi|401795384|gb|AFQ09243.1| DEAD/DEAH box helicase [Bacillus cereus FRI-35]
Length = 525
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKMDRMDAPT 370
>gi|294794656|ref|ZP_06759792.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
gi|294454986|gb|EFG23359.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
Length = 515
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 117/256 (45%), Gaps = 33/256 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ K + V+V+V+DE D + N V + K+L + + QT+ SA++
Sbjct: 130 GRLMDHMDRGSIKFDHVKVVVLDEADEMLNMGF-VDDINKILGAIPE--DHQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + + + T+ ++ + + + ++ + K+ L L P
Sbjct: 187 P---KAIQQLAETYLTEPTLIRMKPTQVTM--DLIEQYYIEVQDRQKFDVLCRLFDIQTP 241
Query: 122 ESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
E IIF V E +E KK G +++ G +++ R +
Sbjct: 242 ELAIIFTRTKRRVDEVTEGLKKRG----------YMAEGIHG---------DLSQQKRDS 282
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+ + R+G +LV+TD+AARG+D+ +H+YN+D+P+ Y HR GRTGR + + +
Sbjct: 283 VIRQFREGTIDILVATDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAF 342
Query: 236 TVTSIITSEELFVLQR 251
T E L ++R
Sbjct: 343 TFVIPREMEHLHAIER 358
>gi|282849975|ref|ZP_06259358.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
gi|294792894|ref|ZP_06758041.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
gi|282580412|gb|EFB85812.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
gi|294456793|gb|EFG25156.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
Length = 515
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 117/256 (45%), Gaps = 33/256 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ K + V+V+V+DE D + N V + K+L + + QT+ SA++
Sbjct: 130 GRLMDHMDRGSIKFDHVKVVVLDEADEMLNMGF-VDDINKILGAIPE--DHQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + + + T+ ++ + + + ++ + K+ L L P
Sbjct: 187 P---KAIQQLAETYLTEPTLIRMKPTQVTM--DLIEQYYIEVQDRQKFDVLCRLFDIQTP 241
Query: 122 ESGIIF------VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
E IIF V E +E KK G +++ G +++ R +
Sbjct: 242 ELAIIFTRTKRRVDEVTEGLKKRG----------YMAEGIHG---------DLSQQKRDS 282
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
+ + R+G +LV+TD+AARG+D+ +H+YN+D+P+ Y HR GRTGR + + +
Sbjct: 283 VIRQFREGTIDILVATDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAF 342
Query: 236 TVTSIITSEELFVLQR 251
T E L ++R
Sbjct: 343 TFVIPREMEHLHAIER 358
>gi|306830918|ref|ZP_07464080.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304426941|gb|EFM30051.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 526
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 111/227 (48%), Gaps = 23/227 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ V+ L++DE D + N + L+ + A S RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDHVETLILDEADEMLN----MGFLEDIEAIISRVPETRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P+ + + Q HV V A + + ++ ++ K+ T+ L+ +
Sbjct: 184 MPEAIKRIGVKFMQNPE-----HVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVNQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F ++K+ + + L + Y+ + +++ R L +
Sbjct: 239 PELSIVF-----GRTKRRVDELTRGLKL----RGYRAEG----IHGDLDQGKRLRVLRDF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 286 KNDNIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 332
>gi|170016724|ref|YP_001727643.1| putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
gi|414596566|ref|ZP_11446140.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
E16]
gi|421876447|ref|ZP_16308004.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
C10]
gi|169803581|gb|ACA82199.1| Putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
gi|372557740|emb|CCF24124.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
C10]
gi|390482587|emb|CCF28201.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
E16]
Length = 522
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 121/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + K+++V+ LV+DE D + N + S+ K ++ +RQT+ SA
Sbjct: 128 GRLLDHINRKTVKIDNVKTLVLDEADEMLNMGFLDDIESIIK-----NTPADRQTLLFSA 182
Query: 60 SIPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQ 117
++P I++ K ++ H+ + A + + FV + K+ T+ +
Sbjct: 183 TMPP-------AIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFD 235
Query: 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
AP+ I+F G + ++ + Y+ + L ++ R+ L
Sbjct: 236 VQAPKLAIVF-GRTKRRVEELSRG--------LEARGYRAAG----LHGDLTQQMRSRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + +LV+TD+AARG+D+ + TH+YNFD+P+ Y+HR GRTGR + K
Sbjct: 283 AQFKSHEINILVATDVAARGLDVKDVTHVYNFDIPQDPESYVHRIGRTGR---AGAKGVS 339
Query: 238 TSIITSEELFVLQRYEN 254
+++ E+ L+ E+
Sbjct: 340 VTLVAPNEMDYLRAVED 356
>gi|223932903|ref|ZP_03624899.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
gi|330833198|ref|YP_004402023.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus
suis ST3]
gi|386584595|ref|YP_006080998.1| DEAD/DEAH box helicase [Streptococcus suis D9]
gi|223898484|gb|EEF64849.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
gi|329307421|gb|AEB81837.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3]
gi|353736741|gb|AER17750.1| DEAD/DEAH box helicase domain protein [Streptococcus suis D9]
Length = 526
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 112/239 (46%), Gaps = 23/239 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ V+ L++DE D + N + L + A +RQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLDGVETLILDEADEMLN----MGFLDDIEAIIERVPESRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P+ + I K+ K + HV + A + + ++ + K+ T+ L+ D
Sbjct: 184 MPEPIK----RIGVKFMK-EPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLMDVDQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F ++ L F + G +++ N R + +
Sbjct: 239 PELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRVIRDF 285
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T S
Sbjct: 286 KNDQIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVS 344
>gi|56461091|ref|YP_156372.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
gi|56180101|gb|AAV82823.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
Length = 594
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 23/227 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ K++ +L+ ++V V+DE D + N + ++ +L + N Q SA++
Sbjct: 136 GRLIDLLNKNVLQLDGLKVGVLDEADEMLNMGF-IEDIETILKAVP--NTAQRALFSATM 192
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R L + D +++ + AI + + + K L L++
Sbjct: 193 PNAIRKLAKTFLK-----DPLNIQIEAIAREKATIKQKAWKVQGMTKMTALTRLLEVTPY 247
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRAASLLEV 180
+ +IFV + + T + + L N +K + L ++N R ++ ++
Sbjct: 248 QRALIFVRTRQD----------TMDVAELLQRNGFKAAP----LSGDLNQAQREQTVSQL 293
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV TD+ ARG+D+PE TH+ N+DLP Y+HR GRTGR
Sbjct: 294 RSGHIEILVGTDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTGR 340
>gi|421879169|ref|ZP_16310642.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
C11]
gi|390446968|emb|CCF26762.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
C11]
Length = 522
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 121/257 (47%), Gaps = 32/257 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L I + K+++V+ LV+DE D + N + S+ K ++ +RQT+ SA
Sbjct: 128 GRLLDHINRKTVKIDNVKTLVLDEADEMLNMGFLDDIESIIK-----NTPADRQTLLFSA 182
Query: 60 SIPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQ 117
++P I++ K ++ H+ + A + + FV + K+ T+ +
Sbjct: 183 TMPP-------AIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFD 235
Query: 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
AP+ I+F G + ++ + Y+ + L ++ R+ L
Sbjct: 236 VQAPKLAIVF-GRTKRRVEELSRG--------LEARGYRAAG----LHGDLTQQMRSRVL 282
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ + +LV+TD+AARG+D+ + TH+YNFD+P+ Y+HR GRTGR + K
Sbjct: 283 AQFKSHEINILVATDVAARGLDVKDVTHVYNFDIPQDPESYVHRIGRTGR---AGAKGVS 339
Query: 238 TSIITSEELFVLQRYEN 254
+++ E+ L+ E+
Sbjct: 340 VTLVAPNEMDYLRAVED 356
>gi|157278092|ref|NP_001098146.1| VASA [Oryzias latipes]
gi|14522857|dbj|BAB61047.1| VASA [Oryzias latipes]
Length = 617
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 111/228 (48%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L V+ LV+DE D + + + +++L+ S S RQT+ SA
Sbjct: 317 GRLLDMIGRGKVGLSKVRHLVLDEADRMLDMGFE-PDMRRLVGSPGMPSKEERQTLMFSA 375
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + K D + V V + + + F+ K K + LL L+++
Sbjct: 376 TFPEDIQRLA----ADFLKVDYLFVAVGVVGGACTDVEQTFLQVTKFNKREQLLDLLRTI 431
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV E ++A + FL ++ + E+ R +L +
Sbjct: 432 GSERTMVFV----ETKRQA------DFIAAFLCQEKVPTTSIHGDREQ---REREKALAD 478
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +A+RG+D+P+ H+ NFDLP + DY+HR GRTGR
Sbjct: 479 FRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGR 526
>gi|24372534|ref|NP_716576.1| ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1]
gi|24346546|gb|AAN54021.1|AE015540_1 ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1]
Length = 420
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 121/256 (47%), Gaps = 28/256 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + ++K F ESV +L+IDE D + + S++ K +A + +Q + SA++
Sbjct: 132 GRLMEYLDKGKFSAESVDILIIDEADRMLDMG--FSAVVKAIA-LEAQGRKQNMLFSATL 188
Query: 62 PQHR--RFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK-MKYQTLLSLIQS 118
RF + +D + + V+A + + +H + K K+ L L++
Sbjct: 189 EGSGVIRFAREVL------NDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHLLKQ 242
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ + I+FV + S G + F+ +M R +L
Sbjct: 243 EDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRG-------------DMEQKKRFQALS 289
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+G +L++TD+AARGID+ + +H+ NFD+PRSA Y+HR GRTGR + K T
Sbjct: 290 RFTKGEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGR---AGAKGTAI 346
Query: 239 SIITSEELFVLQRYEN 254
S+ + ++ ++ + E
Sbjct: 347 SLAEAHDMRIVGKIER 362
>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
Length = 515
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 28/260 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + ++ L ++Q +++DE D + S + ++ +L S RQT+ SA++
Sbjct: 129 GRFMDHMRRNTINLANIQTVILDEADEML-SMGFIEDIETILQEVPS--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + QK+ KS V V + R++ ++ K+ L L+ P
Sbjct: 186 PKR----IQSVSQKFMKSPQT-VAVKNKTMTVDTIEQRYLDLKERDKFDALCRLMDIHCP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSN--SYKGSSDVLLLEEEMNFNSRAASLLE 179
E IIF T VD LS S +G DV + +M R L
Sbjct: 241 ELSIIF--------------GRTKRRVDELSEALSIRGY-DVEGIHGDMKQERREKVLRR 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ +H++NFDLP+ Y+HR GRTGR + +K +
Sbjct: 286 FKRGSIKILVATDVAARGLDISGVSHVFNFDLPQDPESYVHRIGRTGR---AGQKGISFT 342
Query: 240 IITSEELFVLQRYENELKFK 259
+T E L+ E+ K K
Sbjct: 343 FVTPREREYLELIEDTTKSK 362
>gi|433775456|ref|YP_007305923.1| DNA/RNA helicase, superfamily II [Mesorhizobium australicum
WSM2073]
gi|433667471|gb|AGB46547.1| DNA/RNA helicase, superfamily II [Mesorhizobium australicum
WSM2073]
Length = 473
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+ + L + LV+DE D + + ++ +K++ + ++ +RQT SA++
Sbjct: 148 GRLTDLVREGDLILSDTKWLVLDEGDRMLDMG-FINDVKRI--AKATAPDRQTALFSATM 204
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P L + + + V + V+ + + V K K Q L +++ +A
Sbjct: 205 PDEIAELAKGLLK-----NPVRIEVSPQSTAAAEIVQGVVFARTKQKRQVLSTMLADEAM 259
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+S IIF ++K + + D + +K + ++ + N+R +L + R
Sbjct: 260 KSVIIF-----SRTKHGAD----RVTKDLERDGFKAA----VIHGNKSQNARQKALNDFR 306
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
G +LV+TDIAARGID+P +H+ NFDLP A Y+HR GRTGR
Sbjct: 307 DGSVRILVATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGR 352
>gi|328544967|ref|YP_004305076.1| ATP-dependent RNA helicase [Polymorphum gilvum SL003B-26A1]
gi|326414709|gb|ADZ71772.1| ATP-dependent RNA helicase protein [Polymorphum gilvum SL003B-26A1]
Length = 503
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 26/253 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L++++ +L+ V LV+DE D + + + +L+K+ A RQT+ SA++
Sbjct: 152 GRLLDLVDRNALRLDEVGYLVLDEADQMLDLGF-IHALRKIAALVP--KKRQTLLFSATM 208
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ L + + +V A K + C+H FV + K L+S + A
Sbjct: 209 PKQIEDLARAYLKDPVRVEVAPAGRTADK-VDQCVH--FVA--QADKTDLLISCLSERAQ 263
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFL-SNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
+ ++F ++K + L+ L +N+ G+ + N R ++ E+
Sbjct: 264 DLSLVFA-----RTKHGADKVVRKLVAAGLKANAIHGNK---------SQNQRDRAIKEL 309
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G +LV+TD+AARGID+P +H+YNFDLP Y+HR GRT R + +
Sbjct: 310 KTGETRILVATDVAARGIDIPGVSHVYNFDLPDVPESYVHRIGRTAR---AGADGDAVAF 366
Query: 241 ITSEELFVLQRYE 253
EE+ +L+ E
Sbjct: 367 CAPEEIGLLRDIE 379
>gi|161506849|ref|YP_001576803.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC
4571]
gi|160347838|gb|ABX26512.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC
4571]
Length = 503
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 123/267 (46%), Gaps = 26/267 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ L+ V +V+DE D + + + ++ +L +C +QT+ SA++
Sbjct: 133 GRLLDHLKRGTIDLDKVNTVVLDEADEMLDMG-FIKDIESILKYAKNC--KQTLLFSATM 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + L I +K+ K + V + A + + FV + K+ + LI P
Sbjct: 190 P--KPILR--IGEKFMKDPAI-VQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGP 244
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASLLEV 180
+ ++F T VD L+ + + + +++ R A L
Sbjct: 245 DLALVF--------------GRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRF 290
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R+G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + +
Sbjct: 291 REGKLDILVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGR---AGQNGVSVTF 347
Query: 241 ITSEELFVLQRYENELKFKSEELTLQT 267
+T E+ ++ E K K + L T
Sbjct: 348 VTPNEIGYMRTIEQLTKKKMSPIHLPT 374
>gi|145345795|ref|XP_001417385.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577612|gb|ABO95678.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 480
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 106/234 (45%), Gaps = 33/234 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS-----KQVSSLKKLLASYSSCNNRQTVF 56
G L LI++ L VQ L +DE D + + +Q+ + + C RQT+
Sbjct: 186 GRLIDLIDRAKISLSRVQYLALDEADRMLDMGFEPQIRQIVDERDM----PRCGERQTML 241
Query: 57 ASASIPQHRRFLHNCIQQKWTK--SDVVHVHVNAIKPLPSCLHHRF-VICGKKMKYQTLL 113
SA+ P+ IQ+ + D V + V + + + + K LL
Sbjct: 242 FSATFPRE-------IQRMASDFLDDYVFLTVGRVGSSHALITQSVERVTSYHEKSNMLL 294
Query: 114 SLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
L+++ P ++FV ++K+ + L DFL Y+ + + R
Sbjct: 295 DLVEA-VPGLTLVFV-----ETKRGADQ-----LEDFL---YQNGKPATSIHGDRTQQER 340
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
A+L R G +LV+TD+AARG+D+P TH+ NFDLP DY HR GRTGR
Sbjct: 341 EAALKSFRAGKTPILVATDVAARGLDIPHVTHVINFDLPSDIDDYTHRIGRTGR 394
>gi|365852717|ref|ZP_09393074.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
parafarraginis F0439]
gi|363714293|gb|EHL97826.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
parafarraginis F0439]
Length = 503
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 108/229 (47%), Gaps = 27/229 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + I +H KL ++ LV+DE D + N + S+ K + +RQT+ SA
Sbjct: 128 GRILDHISRHTLKLAHIKTLVLDEADEMLNMGFLDDIESIIK-----QTPEDRQTLLFSA 182
Query: 60 SIP-QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
++P Q +R ++ D V + A + + +V + K+ T+
Sbjct: 183 TMPPQIKRVGVQFMR------DPHQVKIKAKELTTDLIDQYYVRVKEYEKFDTMTRFFDV 236
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
PE I+F ++K+ + S L + YK + L ++ R +
Sbjct: 237 QDPEVTIVFC-----RTKRRVDEVSKGLE----ARGYKAAG----LHGDLTQARRTQIMN 283
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
E +QG +LV+TD+AARGID+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 284 EFKQGKIDILVATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGR 332
>gi|337293255|emb|CCB91245.1| ATP-dependent RNA helicase rhlE [Waddlia chondrophila 2032/99]
Length = 355
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 20/226 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + L ++++LV+DE D + + + ++K+ A+ S +RQT+ SA++
Sbjct: 133 GRLIDYINQKAINLSAIEILVLDEADRMLDMGF-IEPVEKIAAATPS--SRQTLLFSATM 189
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
L N + + V+H + + LH+ + G + K Q L ++ D
Sbjct: 190 QGSVLNLSNRLLNEPMDI-VIHSEKTKHENITQKLHY---VDGLQHKNQLLEHILNDDVV 245
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I+F + S+ LL L +M+ R+ ++ ++R
Sbjct: 246 KHAIVFTSTKRHASQLVFELHDKGLLAGALHG-------------DMSQRQRSRTIAQLR 292
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
G +LV+TD+AARGID+ TH+ NFDLPR+ DY+HR GRTGR
Sbjct: 293 TGKIKVLVATDVAARGIDVQNITHVINFDLPRNVEDYVHRIGRTGR 338
>gi|150392377|ref|YP_001322426.1| DEAD/DEAH box helicase [Alkaliphilus metalliredigens QYMF]
gi|149952239|gb|ABR50767.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 387
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 126/268 (47%), Gaps = 36/268 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L ++I+ K+ V+ +V+DE D L + + +LK ++ + + RQ V SA+I
Sbjct: 137 GRLLEVIKLKKIKMHEVKTIVVDEFDILI-AEEHAENLKHIIKT--TLKERQIVCFSATI 193
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
++ + + K K + +++ L S + H ++IC + K++ L +I+S
Sbjct: 194 SENTEQIGMELM-KEPKIIQIQKGQSSLSTL-SNIQHTYIICEHREKFEVLRKIIRS--- 248
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDF-------LSNSYKGSSDVLLLEEEMNFNSRA 174
GN + D + SY G D+ +L N R
Sbjct: 249 -----------------GNVKALVFTNDVRKIEEIQVKLSYNGI-DLGVLMGGSNKTQRK 290
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEK 234
+L R G LLV+TD+AARG+D+ TH+ N+D+P +A Y HR+GRTGR
Sbjct: 291 EALNGFRMGKFPLLVATDVAARGLDIEGLTHVINWDVPLTADQYTHRSGRTGRMGALG-- 348
Query: 235 WTVTSIITSEELFVLQRYENELKFKSEE 262
TV SI+ E + ++ NEL+ + E
Sbjct: 349 -TVVSIVNKREESMFRKITNELEISATE 375
>gi|452990332|emb|CCQ98554.1| putative ATP-dependent RNA helicase [Clostridium ultunense Esp]
Length = 535
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 133/260 (51%), Gaps = 32/260 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + + + KL+ V+++V+DE D + + + ++ +L S + +RQT+ SA++
Sbjct: 139 GRIIDHLNRKTLKLDHVRIVVLDEADEMLDMGF-IDDIESILRSVPA--DRQTLLFSATM 195
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVN---AIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
P R L N ++ K D V VN PL ++++ + +K K +L ++ S
Sbjct: 196 PAEIRSLAN----RYMK-DPQTVRVNREEVAAPLIEQVYYKVL---EKNKLDSLCRVLDS 247
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
+ E GIIF ++KK + + +L +L++ G +++ R +
Sbjct: 248 EEVELGIIFC-----RTKKGVDELTESLQARGYLADGLHG---------DLSQAQRDKVM 293
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ R LL++TD+AARGID+ +H+ N+D+P+ Y+HR GRTGR + ++
Sbjct: 294 GDFRTNRIELLIATDVAARGIDVSNVSHVINYDIPQDPESYVHRIGRTGR---AGKRGIA 350
Query: 238 TSIITSEELFVLQRYENELK 257
+++T E+ L+ E+ +K
Sbjct: 351 ITLVTPREMKQLKAIEHMIK 370
>gi|386578397|ref|YP_006074803.1| ATP-dependent RNA helicase [Streptococcus suis GZ1]
gi|292558860|gb|ADE31861.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
suis GZ1]
Length = 502
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 112/239 (46%), Gaps = 23/239 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ V+ L++DE D + N + L + A +RQT+ SA+
Sbjct: 116 GRLLDLIKRKALKLDGVETLILDEADEMLN----MGFLDDIEAIIERVPESRQTLLFSAT 171
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P+ + I K+ K + HV + A + + ++ + K+ T+ L+ D
Sbjct: 172 MPEPIK----RIGVKFMK-EPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLMDVDQ 226
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PE I+F ++ L F + G +++ N R + +
Sbjct: 227 PELSIVF----GRTKRRVDELTRGLKLRGFRAEGIHG---------DLDQNKRLRVIRDF 273
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T S
Sbjct: 274 KNDQIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVS 332
>gi|423553834|ref|ZP_17530161.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus ISP3191]
gi|401182654|gb|EJQ89786.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus ISP3191]
Length = 528
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKMDRMDAPT 370
>gi|423473254|ref|ZP_17449996.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-2]
gi|402426406|gb|EJV58531.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-2]
Length = 535
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMEAPT 370
>gi|395010633|ref|ZP_10393991.1| DNA/RNA helicase, superfamily II [Acidovorax sp. CF316]
gi|394311286|gb|EJE48656.1| DNA/RNA helicase, superfamily II [Acidovorax sp. CF316]
Length = 437
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 115/249 (46%), Gaps = 36/249 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L+E + KL V LV+DE D L + L+++LA + RQ +F SA+
Sbjct: 135 GRLLDLVEHNAIKLGQVAHLVLDEADRLLDLGF-AEELQRVLALLPA--RRQNLFFSATF 191
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ + L + + ++ V V + A + R + K + Q L L++
Sbjct: 192 PEAVQALADGLLRQ-----PVRVEIAATPQHTPDIAQRAIAVDDKRRTQLLRHLLKEHGW 246
Query: 122 ESGIIFVGEQ------SEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
++FV Q +EK KAG ++ + G ++ SR
Sbjct: 247 TRVLVFVATQYAAEHVAEKLYKAG----------IFASPFHGG---------LSQGSRKQ 287
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L E + ++V+TD+AARGID+ + + N+DLPRSA DY+HR GRTGR + E
Sbjct: 288 VLQEFKDERWQVVVTTDLAARGIDIAQLPAVVNYDLPRSADDYVHRIGRTGR---AGESG 344
Query: 236 TVTSIITSE 244
S +T E
Sbjct: 345 VAVSFVTPE 353
>gi|392404056|ref|YP_006440668.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
gi|390612010|gb|AFM13162.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
Length = 424
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 132/265 (49%), Gaps = 26/265 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +++ L++V+ LV+DE D +F+ + ++K+++A RQT+ SA++
Sbjct: 130 GRLLDHLQRKSLTLDAVETLVLDEADQMFDMGF-LPAIKQIVAKLP--QKRQTMLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ R L I ++ K ++ V + + H ++K LL L++ DA
Sbjct: 187 PEEIRKLSAQILREPVKVELARGPV-------ATISHALYPVTHELKTPLLLHLLK-DAG 238
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ I+ + K+ T L D L+ K L+ ++ N R ++L +
Sbjct: 239 DQPILVFTKTKHKA---------TRLADQLA---KAGFTTASLQGNLSQNRRDSALAGFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TDIAARGID+ +HI N+D+P S+ Y+HR GRT R S + +T +
Sbjct: 287 SGKYQILVATDIAARGIDVNNISHIINYDIPASSETYIHRIGRTARATKSGDAYT---FV 343
Query: 242 TSEELFVLQRYENELKFKSEELTLQ 266
TSE+ ++ E L E+ TL+
Sbjct: 344 TSEDNRQVREIEKALGKPIEKRTLK 368
>gi|392988049|ref|YP_006486642.1| DEAD/DEAH box helicase [Enterococcus hirae ATCC 9790]
gi|392335469|gb|AFM69751.1| DEAD-box ATP dependent DNA helicase [Enterococcus hirae ATCC 9790]
Length = 503
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 116/253 (45%), Gaps = 24/253 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL +V+ LV+DE D + N + ++ +++ RQT+ SA++
Sbjct: 128 GRMLDHINRHTLKLGTVETLVLDEADEMLNMG-FLEDIENIISKVPE--ERQTLLFSATM 184
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + I K+ KS HV + A + + +V + K+ + L P
Sbjct: 185 PPAIK----NIGVKFMKSPT-HVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTP 239
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + L + Y+ + +++ R + L +
Sbjct: 240 ELTIVF-GRTKRRVDE--------LARGLEARGYRAEG----IHGDLSQQKRMSVLRSFK 286
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + + + +
Sbjct: 287 NGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR---AGKGGMSVTFV 343
Query: 242 TSEELFVLQRYEN 254
T E+ L EN
Sbjct: 344 TPNEMSYLHVIEN 356
>gi|228989414|ref|ZP_04149403.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
DSM 12442]
gi|228770361|gb|EEM18936.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
DSM 12442]
Length = 528
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIEQTTKRKIDRMNAPT 370
>gi|228995609|ref|ZP_04155275.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
Rock3-17]
gi|228764181|gb|EEM13062.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
Rock3-17]
Length = 536
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIEQTTKRKIDRMNAPT 370
>gi|417994179|ref|ZP_12634513.1| cold-shock DEAD-box protein A [Lactobacillus casei CRF28]
gi|410530495|gb|EKQ05268.1| cold-shock DEAD-box protein A [Lactobacillus casei CRF28]
Length = 502
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 114/259 (44%), Gaps = 36/259 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL++++VLV+DE D + + + ++K++ + RQT+ SA+I
Sbjct: 128 GRILDHIGRHTLKLQNLKVLVLDEADEMLDMGF-IDDIEKIVEQMPTA--RQTLLFSATI 184
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P +F+H V V + A + + +V K+ + L
Sbjct: 185 PASIMRLTNKFMHEP----------VTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLF 234
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAA 175
P+ +IF T VD L+ K + ++ R +
Sbjct: 235 DVQDPDLALIF--------------GRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMS 280
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L + + G LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + K
Sbjct: 281 VLRQFKSGQLDFLVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGR---AGHKG 337
Query: 236 TVTSIITSEELFVLQRYEN 254
+ +T E+ L E+
Sbjct: 338 VSVTFVTPNEIEYLHTIED 356
>gi|116495993|ref|YP_807727.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
gi|191639473|ref|YP_001988639.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
gi|227533029|ref|ZP_03963078.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239630391|ref|ZP_04673422.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|385821240|ref|YP_005857627.1| DEAD/DEAH box helicase [Lactobacillus casei LC2W]
gi|385824432|ref|YP_005860774.1| DEAD/DEAH box helicase [Lactobacillus casei BD-II]
gi|409998335|ref|YP_006752736.1| DEAD/DEAH box helicase [Lactobacillus casei W56]
gi|417981730|ref|ZP_12622394.1| cold-shock DEAD-box protein A [Lactobacillus casei 12A]
gi|417984551|ref|ZP_12625171.1| cold-shock DEAD-box protein A [Lactobacillus casei 21/1]
gi|417987806|ref|ZP_12628359.1| cold-shock DEAD-box protein A [Lactobacillus casei 32G]
gi|417997288|ref|ZP_12637547.1| cold-shock DEAD-box protein A [Lactobacillus casei M36]
gi|418000194|ref|ZP_12640390.1| cold-shock DEAD-box protein A [Lactobacillus casei T71499]
gi|418003339|ref|ZP_12643426.1| cold-shock DEAD-box protein A [Lactobacillus casei UCD174]
gi|418006207|ref|ZP_12646168.1| cold-shock DEAD-box protein A [Lactobacillus casei UW1]
gi|418008368|ref|ZP_12648235.1| cold-shock DEAD-box protein A [Lactobacillus casei UW4]
gi|418011933|ref|ZP_12651680.1| cold-shock DEAD-box protein A [Lactobacillus casei Lc-10]
gi|418013012|ref|ZP_12652674.1| cold-shock DEAD-box protein A [Lactobacillus casei Lpc-37]
gi|116106143|gb|ABJ71285.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
gi|190713775|emb|CAQ67781.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
gi|227189430|gb|EEI69497.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239526674|gb|EEQ65675.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|327383567|gb|AEA55043.1| DEAD box helicase family protein [Lactobacillus casei LC2W]
gi|327386759|gb|AEA58233.1| DEAD box helicase family protein [Lactobacillus casei BD-II]
gi|406359347|emb|CCK23617.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus casei W56]
gi|410521133|gb|EKP96098.1| cold-shock DEAD-box protein A [Lactobacillus casei 12A]
gi|410522198|gb|EKP97147.1| cold-shock DEAD-box protein A [Lactobacillus casei 32G]
gi|410525109|gb|EKQ00016.1| cold-shock DEAD-box protein A [Lactobacillus casei 21/1]
gi|410533048|gb|EKQ07736.1| cold-shock DEAD-box protein A [Lactobacillus casei M36]
gi|410537114|gb|EKQ11693.1| cold-shock DEAD-box protein A [Lactobacillus casei T71499]
gi|410542456|gb|EKQ16903.1| cold-shock DEAD-box protein A [Lactobacillus casei UCD174]
gi|410544369|gb|EKQ18698.1| cold-shock DEAD-box protein A [Lactobacillus casei UW1]
gi|410547046|gb|EKQ21289.1| cold-shock DEAD-box protein A [Lactobacillus casei UW4]
gi|410551341|gb|EKQ25407.1| cold-shock DEAD-box protein A [Lactobacillus casei Lc-10]
gi|410556209|gb|EKQ30122.1| cold-shock DEAD-box protein A [Lactobacillus casei Lpc-37]
Length = 502
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 114/259 (44%), Gaps = 36/259 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL++++VLV+DE D + + + ++K++ + RQT+ SA+I
Sbjct: 128 GRILDHIGRHTLKLQNLKVLVLDEADEMLDMGF-IDDIEKIVEQMPTA--RQTLLFSATI 184
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P +F+H V V + A + + +V K+ + L
Sbjct: 185 PASIMRLTNKFMHEP----------VTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLF 234
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAA 175
P+ +IF T VD L+ K + ++ R +
Sbjct: 235 DVQDPDLALIF--------------GRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMS 280
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L + + G LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + K
Sbjct: 281 VLRQFKSGQLDFLVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGR---AGHKG 337
Query: 236 TVTSIITSEELFVLQRYEN 254
+ +T E+ L E+
Sbjct: 338 VSVTFVTPNEIEYLHTIED 356
>gi|51473847|ref|YP_067604.1| ATP-dependent RNA helicase RhlE [Rickettsia typhi str. Wilmington]
gi|383752623|ref|YP_005427723.1| ATP-dependent RNA helicase RhlE [Rickettsia typhi str. TH1527]
gi|383843459|ref|YP_005423962.1| ATP-dependent RNA helicase RhlE [Rickettsia typhi str. B9991CWPP]
gi|51460159|gb|AAU04122.1| probable ATP-dependent RNA helicase RhlE [Rickettsia typhi str.
Wilmington]
gi|380759266|gb|AFE54501.1| ATP-dependent RNA helicase RhlE [Rickettsia typhi str. TH1527]
gi|380760106|gb|AFE55340.1| ATP-dependent RNA helicase RhlE [Rickettsia typhi str. B9991CWPP]
Length = 407
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 116/228 (50%), Gaps = 26/228 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + + + + K+E + ++V+DE+D + + +Q+ + K L RQ + SA
Sbjct: 124 GRIIEHLNRRSLKIEHIGIIVLDEMDRMLDMGMKEQLEDINKFLPE-----KRQVLMFSA 178
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P+H + QK+ ++ V + V A + + + K K+ L + +
Sbjct: 179 TMPKH----IIAVSQKYL-NNPVRIMVGATNKAAAEIKQELMHVSNKEKFSELTKQL-GN 232
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
S IIFV K+K++ + + L + ++K + + +++ + RA +L
Sbjct: 233 RVGSVIIFV-----KTKRSADQLAKMLKYE----NHKAEA----IHGDLSQSQRARVILS 279
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R+ ++V+TD+AARG+D+P T H+ N+DLP DYLHR GRTGR
Sbjct: 280 FRKLNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGR 327
>gi|403385798|ref|ZP_10927855.1| ATP-dependent RNA helicase exp9 [Kurthia sp. JC30]
Length = 511
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 122/256 (47%), Gaps = 24/256 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I++ KLE+V+ LV+DE D + N + + +L + + RQT+ SA++
Sbjct: 129 GRILDHIKRRTLKLENVKTLVLDEADEMLNMGF-IEDINAILENVPA--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P R + + ++ V + A + + FV ++ K+ L L+ P
Sbjct: 186 PPAIRKIADTFM-----TEPQSVKIKAKELTVDNIEQFFVKSQEREKFDILSRLLNVQKP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + +A S + +++ G +++ R + L + +
Sbjct: 241 ELAIVF-GRTKRRVDELSHALS---IRGYIAEGIHG---------DLSQAKRLSVLRQFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+ +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + +
Sbjct: 288 ENKIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKSGVAVTFV 344
Query: 242 TSEELFVLQRYENELK 257
T E+ L+ E K
Sbjct: 345 TPREMSYLRIVEETTK 360
>gi|308070585|ref|YP_003872190.1| RNA helicase yqfR [Paenibacillus polymyxa E681]
gi|305859864|gb|ADM71652.1| Probable RNA helicase yqfR [Paenibacillus polymyxa E681]
Length = 463
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 40/272 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +LI K+ ++ +VIDEVD +F + +L + + +RQ VF SA+
Sbjct: 130 GRVRELIASKKLKMHNITAIVIDEVDQMFQLGG-AGDVTNILGT--AQRDRQLVFLSAT- 185
Query: 62 PQHRRFLHNCIQQ--KWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
L++ IQ K D V + ++ + S L H + + ++ K L L++
Sbjct: 186 ------LNDEIQSLAKREMRDYVEIGIDPDQKTASGLEHYYFVSEERDKVDMLRRLVRHF 239
Query: 120 APESGIIFV------GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
P ++FV GE K K G + S G +D + +R
Sbjct: 240 NPRKALVFVNTTNAIGEIEAKLKHMG----------LTTASLYGDADKV---------TR 280
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ L R+ +LV++D+AARG+D+ + +FD + Y+HRAGRTGR
Sbjct: 281 SNVLARFREDKLKVLVASDVAARGLDIEGLEMVIHFDPATDSQAYVHRAGRTGR---MGR 337
Query: 234 KWTVTSIITSEELFVLQRYENELKFKSEELTL 265
K V S++T E F+++++ EL E L
Sbjct: 338 KGLVASVVTDRETFIMRKFSRELGIDIAERAL 369
>gi|407694956|ref|YP_006819744.1| DEAD/DEAH box helicase [Alcanivorax dieselolei B5]
gi|407252294|gb|AFT69401.1| DEAD/DEAH box helicase domain protein [Alcanivorax dieselolei B5]
Length = 410
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 116/258 (44%), Gaps = 22/258 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L ++ L+ V+ LV+DE D + + + +K+++ +RQT+ SA+
Sbjct: 158 GRLLDFAKRRDLWLDRVESLVLDEADRMLDMGF-IPDVKRIVRMTPPNRHRQTLLFSATF 216
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ + Q+WT+ D V V + + + + I + K+ L +LI S+
Sbjct: 217 NED----VMALAQRWTE-DPVTVEIEPAQVTTETVEQKVYITATEDKFNLLYNLIISENM 271
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F + T L D L K V L+ ++ N R +L R
Sbjct: 272 EKVIVFANRRD----------ITRRLNDRL---VKKGLKVSLISGDVPQNQRMKTLERFR 318
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
G +L++TD+A RGI + +H+ NF+LP DY+HR GRTGR S S
Sbjct: 319 AGDLRVLIATDVAGRGIHIDGVSHVVNFNLPEDPEDYVHRIGRTGRAGAS---GVSISFA 375
Query: 242 TSEELFVLQRYENELKFK 259
++ F+L + E + K
Sbjct: 376 CEDDAFLLPQLEEAIGMK 393
>gi|406602489|emb|CCH45957.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 644
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 109/229 (47%), Gaps = 23/229 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLA--SYSSCNNRQTVFASA 59
G L L+E+ + L +++ LV+DE D + + + ++ ++ RQT+ SA
Sbjct: 303 GRLNDLLERGVISLRNIKYLVLDEADRMLDMGFE-PQIRHIVQECDMPPVEERQTLMFSA 361
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P + L + D + + V + + + + K LL ++ +D
Sbjct: 362 TFPTDIQMLARDFLK-----DYIFLSVGKVGSTSENITQKVLYVEDDEKRSVLLDILSAD 416
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS-YKGSSDVLLLEEEMNFNSRAASLL 178
+IFV ++K+ +A L DFL N+ + +S + + N R +L
Sbjct: 417 ENGLTLIFV-----ETKRMADA-----LSDFLINTNFPATS----IHGDRTQNERERALE 462
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P TH+ N+DLP DY+HR GRTGR
Sbjct: 463 YFRSGKAPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGR 511
>gi|354564822|ref|ZP_08983998.1| DEAD/DEAH box helicase domain protein [Fischerella sp. JSC-11]
gi|353549948|gb|EHC19387.1| DEAD/DEAH box helicase domain protein [Fischerella sp. JSC-11]
Length = 516
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 130/269 (48%), Gaps = 25/269 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + L+E+ KL+ V+ V+DE D + S + ++K+L+ + RQT SA++
Sbjct: 130 GRVIDLLERGSLKLDHVKWFVLDEADEML-SMGFIDDVEKILSQ--APQERQTALFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHH-RFVICGKKMKYQTLLSLIQSDA 120
P R L N +D V V V K P+ ++ +++ K + L +++ +
Sbjct: 187 PPSIRQLVNKF-----LNDPVTVAVEQPKAAPNKINQVAYLVPRHWSKVKALQPILEMED 241
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PES +IFV + ++ + VD Y G +++ +R L
Sbjct: 242 PESALIFVRTRRTAAELTNQLQAAGHSVD----EYHG---------DLSQQARERLLTRF 288
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
R +V+TDIAARG+D+ + +H+ NFDLP S Y+HR GRTGR + ++ T ++
Sbjct: 289 RNRQVRWVVATDIAARGLDVDQLSHVINFDLPDSVETYVHRIGRTGR---AGKEGTAITL 345
Query: 241 ITSEELFVLQRYENELKFKSEELTLQTQC 269
+ E Q +E ++ + L++ T+
Sbjct: 346 VQPFERRKQQLFERHVRQSWQLLSIPTRA 374
>gi|195572651|ref|XP_002104309.1| GD18514 [Drosophila simulans]
gi|194200236|gb|EDX13812.1| GD18514 [Drosophila simulans]
Length = 713
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 127/270 (47%), Gaps = 44/270 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LI ++ + ++ LV+DE D + + + ++K++ +RQT+ SA+
Sbjct: 420 GRLNDLIMANVIDVSTITYLVLDEADRMLDMGFE-PQIRKVMLDIRP--DRQTIMTSATW 476
Query: 62 PQHRR-----FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P R ++ N IQ D+ H ++K + + K+ T+ S +
Sbjct: 477 PPGVRRLAQSYMKNPIQVCVGSLDLAATH--SVKQVIKLMEDDMA------KFNTITSFV 528
Query: 117 Q--SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
+ SD + IIF G + +A + S L F++ G+ D + R
Sbjct: 529 KNMSDT-DKIIIFCG----RKVRADDLSSELTLDGFMTQCIHGNRDQM---------DRE 574
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKP----- 229
++ +++ G +LV+TD+A+RG+D+ + TH+ N+D PR+ +Y+HR GRTGR
Sbjct: 575 QAIADIKSGVVRILVATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRQGTS 634
Query: 230 ---FSDEKWTVTSIITSEELFVLQRYENEL 256
F+ E W + E + +LQ E E+
Sbjct: 635 ISFFTREDWG----MAKELIDILQEAEQEV 660
>gi|229009737|ref|ZP_04166960.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
2048]
gi|229055077|ref|ZP_04195508.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
gi|423485535|ref|ZP_17462217.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BtB2-4]
gi|423491260|ref|ZP_17467904.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER057]
gi|423501944|ref|ZP_17478561.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER074]
gi|423596874|ref|ZP_17572899.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD048]
gi|423602239|ref|ZP_17578239.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD078]
gi|423665253|ref|ZP_17640392.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM022]
gi|423671681|ref|ZP_17646685.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM034]
gi|423672515|ref|ZP_17647454.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM062]
gi|228721261|gb|EEL72786.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
gi|228751532|gb|EEM01335.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
2048]
gi|401151508|gb|EJQ58957.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER074]
gi|401161714|gb|EJQ69077.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER057]
gi|401218539|gb|EJR25216.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD048]
gi|401226140|gb|EJR32681.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD078]
gi|401290577|gb|EJR96269.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM022]
gi|401291502|gb|EJR97173.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM034]
gi|401311621|gb|EJS16907.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM062]
gi|402441494|gb|EJV73449.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BtB2-4]
Length = 538
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE IIF ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIIF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGTIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKVDRMDAPT 370
>gi|301067543|ref|YP_003789566.1| superfamily II DNA and RNA helicase [Lactobacillus casei str.
Zhang]
gi|300439950|gb|ADK19716.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str.
Zhang]
Length = 502
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 114/259 (44%), Gaps = 36/259 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I +H KL++++VLV+DE D + + + ++K++ + RQT+ SA+I
Sbjct: 128 GRILDHIGRHTLKLQNLKVLVLDEADEMLDMGF-IDDIEKIVEQMPTA--RQTLLFSATI 184
Query: 62 PQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P +F+H V V + A + + +V K+ + L
Sbjct: 185 PASIMRLTNKFMHEP----------VTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLF 234
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAA 175
P+ +IF T VD L+ K + ++ R +
Sbjct: 235 DVQDPDLALIF--------------GRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMS 280
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235
L + + G LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR + K
Sbjct: 281 VLRQFKSGQLDFLVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGR---AGHKG 337
Query: 236 TVTSIITSEELFVLQRYEN 254
+ +T E+ L E+
Sbjct: 338 VSVTFVTPNEIEYLHTIED 356
>gi|410614834|ref|ZP_11325872.1| cold-shock DEAD box protein A homolog [Glaciecola psychrophila 170]
gi|410165683|dbj|GAC39761.1| cold-shock DEAD box protein A homolog [Glaciecola psychrophila 170]
Length = 420
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 119/254 (46%), Gaps = 27/254 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + IEK F ++ L++DE D + + S + +A+ + +QT+ SA++
Sbjct: 132 GRLFEHIEKESFDCRDIECLILDEADRMLDMG--FSPVVNQIAAEARWR-KQTMLFSATL 188
Query: 62 PQH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
RF + +D V + ++ + +H + LL+ I S
Sbjct: 189 EGTGIARFSDELL------NDPVELEADSSRKEKGIIHQWIHLADDAKHKLDLLTHILST 242
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E+ I+FV + + G S + D + L+ EM + R ++
Sbjct: 243 QVETAIVFVKTRERLATLVGQLQSIDI-------------DCVWLQGEMPQDKRNTAMER 289
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
R G +L++TD+AARGID+ +H+ N+D+PR+A Y+HR GRTGR + K T S
Sbjct: 290 FRTGEVKILIATDVAARGIDVDNISHVINYDMPRTADVYVHRIGRTGR---AGNKGTAIS 346
Query: 240 IITSEELFVLQRYE 253
I+ + ++ V+ + E
Sbjct: 347 IVEAHDIAVVPKIE 360
>gi|386284061|ref|ZP_10061284.1| DEAD/DEAH box helicase [Sulfurovum sp. AR]
gi|385344964|gb|EIF51677.1| DEAD/DEAH box helicase [Sulfurovum sp. AR]
Length = 432
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 120/258 (46%), Gaps = 26/258 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L IE L+ + +++DE D + ++ L ++ C +QT+ SA+
Sbjct: 138 GRLQNFIEDKKINLDYINTVILDEADTML----ELGFLSEIQGILKHCVQPKQTMMFSAT 193
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
I Q+ + L K D V V+ + + + HR K K + LIQ
Sbjct: 194 ISQNIKKL-----AKEFLRDPAIVEVSQRRDVVDFIAHRAYKVDKARKAELTAKLIQDMH 248
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
+ ++F A S + ++L + +S ++ ++ +RA SL +
Sbjct: 249 LDQVLLF----------ASTKESANKIYEYLRSQNIRTS---IIHGDLTRGARAKSLALL 295
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G +LV+TDIAARGID+ E + + N+D+P D+ HR GRTGR ++ K +V SI
Sbjct: 296 KSGKTQVLVATDIAARGIDIKELSMVINYDMPEGTDDFTHRVGRTGR---ANHKGSVISI 352
Query: 241 ITSEELFVLQRYENELKF 258
+T+ + V + E L+
Sbjct: 353 LTTRDYDVFSKMERNLRL 370
>gi|375147728|ref|YP_005010169.1| DEAD/DEAH box helicase [Niastella koreensis GR20-10]
gi|361061774|gb|AEW00766.1| DEAD/DEAH box helicase domain protein [Niastella koreensis GR20-10]
Length = 563
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 21/226 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L LIE+ LE +Q +++DE D + N Q ++ +L + + +F++
Sbjct: 131 GRLIDLIERKAIDLEQIQYVILDEADEMLNMGFQ-DDIEFILKN-TPKREATWLFSATMP 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P+ RR + +++ K D + V V + + H++ + + +Y+ L LI +
Sbjct: 189 PEIRR-----VSKRYMK-DPIEVTVGKVNSANKNIDHQYYLTSAQHRYEALKRLIDFNPG 242
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
GIIF +++ D + D+ L ++ R + + R
Sbjct: 243 IYGIIFTRTKADAQ-------------DIAEKLTREGYDIDALHGDLTQQQRDKVMGDFR 289
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ LL++TD+AARGID+ TH+ N++LP Y HR+GRTGR
Sbjct: 290 EKTLQLLIATDVAARGIDVQGITHVINYELPDDVEVYTHRSGRTGR 335
>gi|219686271|dbj|BAH08688.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Pagrus major]
Length = 631
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 113/228 (49%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L +I + L ++ LV+DE D + + + ++++L+ S S NRQT+ SA
Sbjct: 332 GRLMDVIGRGKVGLSKLRYLVLDEADRMLDMGFE-PAMRRLVGSPGMPSKENRQTLMFSA 390
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P + + + K+D + + V + + + FV K K + L L+++
Sbjct: 391 TYPDDIQRMG----ADFLKTDYLFLAVGVVGAACNDVEQTFVQVTKFSKREQLFDLLKTT 446
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV ++K+ + +T L + + + + + R +L +
Sbjct: 447 GTERTMVFV-----ETKRQADFIATYLCQEKVPTTS--------IHGDREQRERELALAD 493
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G ++V+T +AARG+D+P+ H+ NFDLP+ +Y+HR GRTGR
Sbjct: 494 FRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPKDIDEYVHRIGRTGR 541
>gi|254437196|ref|ZP_05050690.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
307]
gi|198252642|gb|EDY76956.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
307]
Length = 435
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 25/228 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L L+E+ +L + LV+DE D + + + + LLA RQT+ SA
Sbjct: 133 GRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAP-----ERQTMLFSA 187
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
++P+ L + + + V V+A + K K LL LI
Sbjct: 188 TMPKLMAELAGAFLK-----NPMRVQVDAPGKPVERIEQSVHFVAKAAKTDLLLELIDKH 242
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E I+F G S+K ++ FLS S G+ + R ++ +
Sbjct: 243 RDERAIVF-GRTKHGSEKLHKLLASK---GFLSASIHGNK---------SQGQRDRAITD 289
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ G +LV+TD+AARG+D+PE HIYN+DLP A +Y+HR GRT R
Sbjct: 290 FKAGKVKILVATDVAARGLDIPEVKHIYNYDLPNVAENYVHRIGRTAR 337
>gi|429205509|ref|ZP_19196781.1| ATP-dependent RNA helicase [Lactobacillus saerimneri 30a]
gi|428146120|gb|EKW98364.1| ATP-dependent RNA helicase [Lactobacillus saerimneri 30a]
Length = 477
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 39/235 (16%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I++ L VQ+LV+DE D + + V ++ ++ + + RQT+ SA++
Sbjct: 128 GRLLDHIQRKTVDLRHVQMLVLDEADEMLDMGF-VEDIENIIHALPA--QRQTLLFSATM 184
Query: 62 PQH-----RRFLHNC----IQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTL 112
PQ RF+H+ I+ K +D+V + FV K++ +
Sbjct: 185 PQQILRIGERFMHDPQIVKIKAKELTTDLVDQY--------------FVKAKDYEKFEIM 230
Query: 113 LSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172
LI AP+ I+F G + + + Y + + ++
Sbjct: 231 TRLIDIQAPDLTIVF-GRTKRRVDEVARG--------LEARGYNAAG----IHGDLTQQR 277
Query: 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R L + ++G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR
Sbjct: 278 RMEILRKFKEGQLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 332
>gi|229165218|ref|ZP_04293010.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
gi|228618250|gb|EEK75283.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
Length = 519
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 110 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 166
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 167 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 220
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE IIF ++K+ + S L L + + G ++ R + L +
Sbjct: 221 PELAIIF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 266
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 267 FKEGTIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 323
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 324 FVTPRESGQLKNIERTTKRKVDRMDAPT 351
>gi|91788228|ref|YP_549180.1| DEAD/DEAH box helicase [Polaromonas sp. JS666]
gi|91697453|gb|ABE44282.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
Length = 422
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 121/267 (45%), Gaps = 32/267 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L L+E + K+ V LV+DE D L + +++ + +LL RQ +F SA
Sbjct: 138 GRLLDLLEHNALKISEVSTLVLDEADRLLDLGFGEELGRILELLPP-----RRQNLFFSA 192
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P L + D + + V A+ + R + + Q L L+Q++
Sbjct: 193 TFPPAIEVLAESMLH-----DPLRIEVQAVPETKPDIAQRAIQVDASRRTQLLRHLVQTE 247
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLL-VDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
E ++FV +K A + L V + + G E++ R L
Sbjct: 248 KWERALVFVA-----TKHAAEIVADKLRKVHIEAEPFHG---------ELSQGKRTQVLQ 293
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238
+ R ++V+TD+AARGID+ + + N+DLPRSA+DY HR GRTGR + E
Sbjct: 294 DFRIKAVQVVVATDVAARGIDIAQMPVVVNYDLPRSAVDYTHRIGRTGR---AGESGLAV 350
Query: 239 SIITS--EELFVLQRYENELKFKSEEL 263
S +++ E F L +K + E++
Sbjct: 351 SFVSAGTEAHFKLIEKRQGIKVQREQV 377
>gi|442608582|ref|ZP_21023329.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
gi|441749978|emb|CCQ09391.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
Length = 408
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 118/265 (44%), Gaps = 48/265 (18%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L + + F E+V++L++DE D + + + LK + N RQ SA++
Sbjct: 132 GRLMEYFQTENFHAENVELLILDEADRMLDMGFRKEMLK---ICDEAKNRRQCFLFSATL 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLH-----------HRFVICGK--KMK 108
+ D V + I P+ L H++V + K
Sbjct: 189 ----------------EGDSVELFAERILNDPALLEAEPSRKESAKIHQWVHLADTYEHK 232
Query: 109 YQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEM 168
+ L L++ + I+FV + K G + + V +L EM
Sbjct: 233 LELLTHLLKQEDVTKAIVFVKTRERLEKLVGELSTREIRVTWLRG-------------EM 279
Query: 169 NFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRK 228
+ R ++ G LLV+TD+AARGID+ + +H++NFD+PR+A Y+HR GRTGR
Sbjct: 280 PQDKRMKAMEAFHSGRTKLLVATDVAARGIDVADISHVFNFDMPRTADIYVHRIGRTGR- 338
Query: 229 PFSDEKWTVTSIITSEELFVLQRYE 253
+ +K T S++ + ++ VL + E
Sbjct: 339 --AGKKGTAVSLVEAHDMAVLGKIE 361
>gi|410081586|ref|XP_003958372.1| hypothetical protein KAFR_0G02030 [Kazachstania africana CBS 2517]
gi|372464960|emb|CCF59237.1| hypothetical protein KAFR_0G02030 [Kazachstania africana CBS 2517]
Length = 606
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 33/234 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L L+E+ L +V+ LV+DE D + + + ++ ++ + RQT+ SA
Sbjct: 280 GRLSDLLERGKISLANVKYLVLDEADRMLDMGFE-PQIRHIVEGCDMTPVGERQTLMFSA 338
Query: 60 SIP---QH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLS 114
+ P QH R FL SD + + V + + R + + K LL
Sbjct: 339 TFPADIQHLARDFL----------SDYIFLSVGRVGSTSENITQRVLYVEDEDKKSALLD 388
Query: 115 LIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFL-SNSYKGSSDVLLLEEEMNFNSR 173
L+ + +IFV ++K+ + L DFL +++ ++ + + + R
Sbjct: 389 LLAASDEGLTLIFV-----ETKRLADQ-----LTDFLIMQNFRATA----IHGDRTQSER 434
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L R G LLV+T +AARG+D+P TH+ NFDLP DY+HR GRTGR
Sbjct: 435 ERALAAFRSGAANLLVATAVAARGLDIPNVTHVINFDLPSDIDDYVHRIGRTGR 488
>gi|312113545|ref|YP_004011141.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
gi|311218674|gb|ADP70042.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
ATCC 17100]
Length = 494
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 115/251 (45%), Gaps = 28/251 (11%)
Query: 15 LESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCI 72
+ +V LVIDE D + + + + KLL +RQT+F SA++P +
Sbjct: 144 MNAVDYLVIDEADRMLDMGFIPDIERICKLLPP-----SRQTLFFSATMPPE---IQKLT 195
Query: 73 QQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP--ESGIIFVGE 130
Q + V V A +F K K L L++S+ ++ IIF
Sbjct: 196 DQFLKNPEQVRVSAPATAAKNITQKLKFSPADSKTKRHVLRELMRSEVSTIQNAIIFCNR 255
Query: 131 QSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVS 190
+ + + L + + + + L +++ R A+L R+G L +
Sbjct: 256 KRDVA---------VLHKSLVKHGFNAGA----LHGDLDQRQRTATLEAFRKGEITYLAA 302
Query: 191 TDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQ 250
+D+AARG+D+PE +H++NFD+P S DY+HR GRTGR + I+T +E+ ++
Sbjct: 303 SDVAARGLDIPEVSHVFNFDVPISPEDYVHRIGRTGR---AGRDGYAAMIVTPKEMKGVR 359
Query: 251 RYENELKFKSE 261
EN K K E
Sbjct: 360 AIENLCKAKIE 370
>gi|255101237|ref|ZP_05330214.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-63q42]
Length = 381
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 136/267 (50%), Gaps = 28/267 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + LI++ K +++ +++DEVD L N K ++ ++ ++ ++ +RQ + SAS+
Sbjct: 132 GRVLDLIKQKKLKSHNIKTIILDEVDNLLNG-KNITCIEDII--RTTLRDRQIIGCSASL 188
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNA-IKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+ + + +++ +++ + I P ++H +++ + K+ L + +
Sbjct: 189 TDSTIKICDKLMKEF---EIIKTKEKSQINP---NINHSYLLGEIRDKFTFLRKALAATN 242
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRAASLLE 179
P+ I+FV N + +LV L+ ++YK +E+E R ++ +
Sbjct: 243 PKKAIVFVN----------NEKNIEVLVSKLNYHNYKAIGIFGNMEKE----DRKNAINK 288
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +L++TD++ARG+D+ + +H++N D P+S +YLHR GRT R + S
Sbjct: 289 FKLGKAKILITTDLSARGLDIVDVSHVFNLDFPKSKNEYLHRCGRTAR---GNRSGNTIS 345
Query: 240 IITSEELFVLQRYENELKFKSEELTLQ 266
IIT +EL +++ + E TLQ
Sbjct: 346 IITKKELDIIKDLQKEFNIVITPKTLQ 372
>gi|257093622|ref|YP_003167263.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257046146|gb|ACV35334.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 491
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 123/266 (46%), Gaps = 28/266 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L LIE+ SVQ LV+DE D + + V+ + LL RQ++ SA
Sbjct: 136 GRLLDLIEQRCLNFGSVQALVLDEADRMLDMGFIPDVTRIINLLP-----QQRQSLLFSA 190
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ + + L + + KS V+ + V + + HR + K L+ L++S
Sbjct: 191 TFSEEIKKLAD----RMLKSPVL-IEVARRNTVSETITHRVHPVAAEAKRALLVKLLRSS 245
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
++F + E +K A + D + + + R +L
Sbjct: 246 DFNQVLVFTRTKIETNKLARELQRAGIAADSIHG-------------DKSQQERLKALEA 292
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ E H+ NF+LPR+ DY+HR GRTGR + + T S
Sbjct: 293 FKDGSVLVLVATDVAARGLDIDELPHVINFELPRTPEDYIHRIGRTGR---AGKPGTAVS 349
Query: 240 IITSEELFVLQRYENELKFKSEELTL 265
++++ E+ L E ++ + E++ +
Sbjct: 350 LVSASEVPYLVDIEKLIRIQVEQIVV 375
>gi|255319460|ref|ZP_05360674.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens SK82]
gi|262378516|ref|ZP_06071673.1| superfamily II DNA and RNA helicase [Acinetobacter radioresistens
SH164]
gi|421856913|ref|ZP_16289271.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
gi|255303400|gb|EET82603.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens SK82]
gi|262299801|gb|EEY87713.1| superfamily II DNA and RNA helicase [Acinetobacter radioresistens
SH164]
gi|403187660|dbj|GAB75472.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
Length = 383
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 111/229 (48%), Gaps = 25/229 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +E+ L+ ++ LVIDE D L + + S+K+++ RQT+ SA+
Sbjct: 138 GRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGF-IPSVKRIVRFSPRKEQRQTLMFSAT- 195
Query: 62 PQHRRFLHNCIQ--QKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
F ++ + Q+W + V V + K + + R + + KY+ L +++ +
Sbjct: 196 -----FSYDVLNLAQQWL-FEPVTVEIEPEKKTNADVEQRVYMVANRDKYKLLQEILRDE 249
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRAASLL 178
E +IF + + + L D L + YK V++L E+ + R L
Sbjct: 250 PIEKVMIFANRRDQVRR----------LYDHLKKDGYK----VVMLSGEIAQDKRLKMLD 295
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ + G ++++TD+A RGI + +H+ NF LP + DY+HR GRTGR
Sbjct: 296 QFKNGKHNIMIATDVAGRGIHVDNVSHVINFTLPEQSDDYVHRIGRTGR 344
>gi|21228658|ref|NP_634580.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
gi|20907159|gb|AAM32252.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
Length = 429
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 110/232 (47%), Gaps = 34/232 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L I ++ KL +V+ LV+DE D +F+ +V ++K++ C NRQT+ SA+
Sbjct: 154 GRLLDHISRNTIKLNNVKTLVLDEADHMFDMGFKVD-VEKII---KECPQNRQTLLFSAT 209
Query: 61 IPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSL 115
I + R+++ N ++ T+S + P L+ MK L+ L
Sbjct: 210 ITKDIVRLSRKYMENPVRVS-TESYID----------PQKLNQVVYKVQDDMKLSLLVYL 258
Query: 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175
+Q++ G++F + K A N K S + + + + N R
Sbjct: 259 LQNEKSNLGMVFCNTKRNTDKVA-------------KNLRKSSINAVAIHGGLTQNERTR 305
Query: 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + G +LV TD+A RG+D+ +H+YN+D+PR + Y+HR GRT R
Sbjct: 306 ILEKFHSGNIGVLVCTDVAGRGLDIQGVSHVYNYDIPRESKQYIHRIGRTAR 357
>gi|421464012|ref|ZP_15912705.1| DEAD/DEAH box helicase [Acinetobacter radioresistens WC-A-157]
gi|400206386|gb|EJO37363.1| DEAD/DEAH box helicase [Acinetobacter radioresistens WC-A-157]
Length = 383
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 111/229 (48%), Gaps = 25/229 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L +E+ L+ ++ LVIDE D L + + S+K+++ RQT+ SA+
Sbjct: 138 GRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGF-IPSVKRIVRFSPRKEQRQTLMFSAT- 195
Query: 62 PQHRRFLHNCIQ--QKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
F ++ + Q+W + V V + K + + R + + KY+ L +++ +
Sbjct: 196 -----FSYDVLNLAQQWL-FEPVTVEIEPEKKTNADVEQRVYMVANRDKYKLLQEILRDE 249
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRAASLL 178
E +IF + + + L D L + YK V++L E+ + R L
Sbjct: 250 PIEKVMIFANRRDQVRR----------LYDHLKKDGYK----VVMLSGEIAQDKRLKMLD 295
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ + G ++++TD+A RGI + +H+ NF LP + DY+HR GRTGR
Sbjct: 296 QFKNGKHNIMIATDVAGRGIHVDNVSHVINFTLPEQSDDYVHRIGRTGR 344
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,929,098,100
Number of Sequences: 23463169
Number of extensions: 155796581
Number of successful extensions: 431457
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 25371
Number of HSP's successfully gapped in prelim test: 1704
Number of HSP's that attempted gapping in prelim test: 388174
Number of HSP's gapped (non-prelim): 31254
length of query: 269
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 129
effective length of database: 9,074,351,707
effective search space: 1170591370203
effective search space used: 1170591370203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)