BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024287
(269 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3E9C3|RH58_ARATH DEAD-box ATP-dependent RNA helicase 58, chloroplastic
OS=Arabidopsis thaliana GN=RH58 PE=2 SV=1
Length = 472
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 196/265 (73%), Positives = 231/265 (87%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ SLC ++EKHIF+++SV+VLV+DEVDFLF SSKQV S++KLL S+SSC+ RQTVFASAS
Sbjct: 208 VASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASAS 267
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQH+ F+H+CIQQKWTK DVVHVHV+AI P+P CL HRFV+C K K+Q LL+L++SDA
Sbjct: 268 IPQHKHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVLLALLESDA 327
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
PES IIFVGEQSEKSKKAGN PSTTLL++FL SYKGS ++LLLE +MNFNSRAASL E+
Sbjct: 328 PESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEI 387
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
RQGGG+LLVSTDIAARGIDLPETTHI+NFDLP++ DYLHRAGR GRKPFSD K V ++
Sbjct: 388 RQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANL 447
Query: 241 ITSEELFVLQRYENELKFKSEELTL 265
ITSEE FVLQRYENEL F EE+ L
Sbjct: 448 ITSEERFVLQRYENELMFSCEEMML 472
>sp|Q0JFN7|RH58_ORYSJ DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os01g0970600 PE=2 SV=2
Length = 438
Score = 387 bits (994), Expect = e-107, Method: Compositional matrix adjust.
Identities = 177/267 (66%), Positives = 227/267 (85%), Gaps = 1/267 (0%)
Query: 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60
+ SLCQ+IEK F L+S++VLVIDEVDF+F SSKQVSSL+K+L SYS+ ++RQT+FASAS
Sbjct: 167 VASLCQMIEKRAFSLQSMRVLVIDEVDFIFGSSKQVSSLRKILTSYSAASSRQTIFASAS 226
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
IPQH RF+H+C+Q KWTK+DVVHVHVN ++P+PS L H++ IC KK + LLSL++ DA
Sbjct: 227 IPQHNRFVHDCVQHKWTKTDVVHVHVNPVQPMPSHLQHKYAICSKKERLHVLLSLLEKDA 286
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180
P+SGIIFV EQSEKSKKAG+ PSTT++V+FL +Y GS +VLLLEE+MNFN+RA S EV
Sbjct: 287 PKSGIIFVAEQSEKSKKAGHPPSTTVVVEFLRTTYMGSLEVLLLEEDMNFNARATSFTEV 346
Query: 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240
+ G G+LLVSTDIA+RG DLP+T+HIYNFDLP++AIDYLHRAGRTGR+PFS +VT++
Sbjct: 347 K-GKGFLLVSTDIASRGFDLPQTSHIYNFDLPKTAIDYLHRAGRTGREPFSKLACSVTTL 405
Query: 241 ITSEELFVLQRYENELKFKSEELTLQT 267
IT +E FVLQR++NELKF EEL +++
Sbjct: 406 ITEDEHFVLQRFQNELKFHCEELPVES 432
>sp|P0A4D8|EXP9_STRR6 Probable ATP-dependent RNA helicase exp9 OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1
Length = 524
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>sp|P0A4D7|EXP9_STRPN Probable ATP-dependent RNA helicase exp9 OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=exp9 PE=3 SV=1
Length = 524
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 28/255 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASAS 60
G L LI++ KL+ ++ L++DE D + N + L+ + A S NRQT+ SA+
Sbjct: 128 GRLLDLIKRKALKLQDIETLILDEADEMLN----MGFLEDIEAIISRVPENRQTLLFSAT 183
Query: 61 IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
+P + I ++ K+ HV + A + + ++ ++ K+ T+ L+
Sbjct: 184 MPDAIK----RIGVQFMKAPE-HVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQ 238
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLV-DFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + + L + F + G +++ N R L +
Sbjct: 239 PELAIVF-----GRTKRRVDELTRGLKIRGFRAEGIHG---------DLDQNKRLRVLRD 284
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
+ G +LV+TD+AARG+D+ TH+YN+D+P+ Y+HR GRTGR S + T
Sbjct: 285 FKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSIT--- 341
Query: 240 IITSEELFVLQRYEN 254
+ E+ LQ EN
Sbjct: 342 FVAPNEMGYLQIIEN 356
>sp|Q5QYF8|RHLB_IDILO ATP-dependent RNA helicase RhlB OS=Idiomarina loihiensis (strain
ATCC BAA-735 / DSM 15497 / L2-TR) GN=rhlB PE=3 SV=1
Length = 425
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 35/234 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L ++ +F L+ ++V+V+DE D +F+ + ++ LL + R + SA++
Sbjct: 142 GRLIDFYKQDLFSLKDIEVVVLDEADRMFDLGF-IDDIRYLLQKMPDPSKRLNLLFSATL 200
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNA-----IKPL---PSCLHHRFVICGKKMKYQTLL 113
+ ++ + H+NA ++PL + + K K+ LL
Sbjct: 201 -------------SYRVQELAYEHMNAPTKLEVEPLQKTATRVTEELFYPSKPEKFPLLL 247
Query: 114 SLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173
+LI+ D P+ I+F + K G ++N ++ LL ++ R
Sbjct: 248 TLIEEDWPDKAIVFANTKHGCEKVHGW---------LVANEHRAG----LLTGDVPQKKR 294
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
L + +G LV+TD+AARG+ +PE TH+YNFDLP DY+HR GRTGR
Sbjct: 295 LRILEDFAEGKLDFLVATDVAARGLHIPEVTHVYNFDLPDDCEDYVHRIGRTGR 348
>sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus licheniformis
(strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1
Length = 487
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 124/271 (45%), Gaps = 34/271 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L++V +V+DE D + N + ++ +L++ + + QT+ SA++
Sbjct: 130 GRLLDHINRRTMRLQTVNTVVLDEADEMLNMGF-IEDIESILSNVPAEH--QTLLFSATM 186
Query: 62 PQ-----HRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI 116
P RF+ N HV V A + S + ++ ++ K+ TL L+
Sbjct: 187 PAPIKRIAERFMTNP----------EHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLL 236
Query: 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176
+PE I+F ++ L + + G ++ R +
Sbjct: 237 DIQSPELAIVF----GRTKRRVDELTEALNLRGYTAEGIHG---------DLTQAKRMVA 283
Query: 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236
L + +QG +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +
Sbjct: 284 LRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGM 340
Query: 237 VTSIITSEELFVLQRYENELKFKSEELTLQT 267
+ IT E +L+ E K K + + T
Sbjct: 341 AMTFITPREKDMLRAIEQTTKRKMDRMKAPT 371
>sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DED1 PE=3 SV=1
Length = 627
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 23/229 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLL--ASYSSCNNRQTVFASA 59
G L L+E+ L +V+ LV+DE D + + + +++++ + S +NRQT+ SA
Sbjct: 301 GRLTDLLERRYISLANVKYLVLDEADRMLDMGFE-PQIRRIVEGSDMPSVDNRQTLMFSA 359
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P + L + + D V + V + + + + K TLL L+ +
Sbjct: 360 TFPSEIQHLASDFLK-----DYVFLSVGRVGSTSENITQKILYVEDFDKNDTLLDLLAAS 414
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFL-SNSYKGSSDVLLLEEEMNFNSRAASLL 178
+IFV ++K+A ++ L DFL +K ++ + + R +L
Sbjct: 415 NEGLTLIFV-----ETKRAADS-----LTDFLIMEGFKATA----IHGDRTQGERERALS 460
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ G +LV+T +AARG+D+P TH+ NFDLP DY+HR GRTGR
Sbjct: 461 AFKTGRATILVATAVAARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGR 509
>sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus subtilis
(strain 168) GN=cshA PE=1 SV=2
Length = 494
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 126/262 (48%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L I + +L +V +V+DE D + N + ++ +L++ S QT+ SA++
Sbjct: 130 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF-IDDIESILSNVPS--EHQTLLFSATM 186
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ T+ + HV V A + S + ++ ++ K+ TL L+ +P
Sbjct: 187 PAP---IKRIAERFMTEPE--HVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 241
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G ++ R +L + +
Sbjct: 242 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLTQAKRMVALRKFK 288
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + I
Sbjct: 289 EGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR---AGKTGMAMTFI 345
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E +L+ E K K + +
Sbjct: 346 TPREKSMLRAIEQTTKRKMDRM 367
>sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=Geobacillus
kaustophilus (strain HTA426) GN=cshA PE=3 SV=1
Length = 467
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 24/262 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +LE V +V+DE D + N + ++ +L+ + RQT+ SA++
Sbjct: 129 GRIIDHINRGTLRLEHVHTVVLDEADEMLNMGF-IEDIEAILSHVPA--ERQTLLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + ++ + ++V V + +P+ + + KK K+ L L+ AP
Sbjct: 186 PDP---IRRIAERFMNEPELVKVKAKEMT-VPNIQQYYLEVHEKK-KFDILTRLLDIQAP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F G + + A + L + + G +++ R + L + +
Sbjct: 241 ELAIVF-GRTKRRVDELAEALN---LRGYAAEGIHG---------DLSQAKRLSVLRKFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241
+G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + + + +
Sbjct: 288 EGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKTGVAMTFV 344
Query: 242 TSEELFVLQRYENELKFKSEEL 263
T E+ L E K K E +
Sbjct: 345 TPREIGQLHHIERTTKRKMERM 366
>sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=cshA PE=3 SV=1
Length = 528
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKMDRMDAPT 370
>sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus anthracis
GN=cshA PE=3 SV=1
Length = 528
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKMDRMDAPT 370
>sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
(strain Al Hakam) GN=cshA PE=3 SV=1
Length = 528
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKMDRMDAPT 370
>sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ZK / E33L) GN=cshA PE=3 SV=1
Length = 528
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKMDRMDAPT 370
>sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2
Length = 533
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKMDRMDAPT 370
>sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 10987) GN=cshA PE=3 SV=1
Length = 525
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + I + +L++V+ +V+DE D + N + ++ +L + QT+ SA++
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGF-IEDIEAILTDVPETH--QTLLFSATM 185
Query: 62 PQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA 120
P RR + + H+ V A + + ++ +K K+ L L+ +
Sbjct: 186 PDPIRRIAERFMTEPQ------HIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTL-LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
PE I+F ++K+ + S L L + + G ++ R + L +
Sbjct: 240 PELAIVF-----GRTKRRVDELSEALNLRGYAAEGIHG---------DLTQAKRMSVLRK 285
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239
++G +LV+TD+AARG+D+ TH+YNFD+P+ Y+HR GRTGR + +K
Sbjct: 286 FKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR---AGKKGIAML 342
Query: 240 IITSEELFVLQRYENELKFKSEELTLQT 267
+T E L+ E K K + + T
Sbjct: 343 FVTPRESGQLKNIERTTKRKMDRMDAPT 370
>sp|Q9HGM5|DBP8_SCHPO ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dbp8 PE=3 SV=1
Length = 453
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 122/272 (44%), Gaps = 33/272 (12%)
Query: 2 GSLCQLI----EKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFA 57
G L LI E+ I L ++ LV+DE D L S L + + +RQT+
Sbjct: 134 GRLADLIRSNGEETIAGLRRIKFLVMDEADRLL-SPTFADDLDDCFSVLPASEDRQTLLF 192
Query: 58 SASIPQHRRFLHNCIQQK-----WTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTL 112
+A++ R L Q+ W + V + I +PS L ++ +++ L
Sbjct: 193 TATVTDAIRQLKYQPQKNNKPPLW----LYEVETDNIS-VPSTLQQSYIFVSSQVREAYL 247
Query: 113 LSL--IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170
+ L I +A +S IIFV +++ A S L++ V L EM
Sbjct: 248 VHLLTIPENAKKSAIIFVN----RTRTAELIYSILRLLEL---------RVTELHSEMVQ 294
Query: 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230
R SL R +LV+TD+A+RG+D+P + NFDLPR DY+HR GRT R
Sbjct: 295 RERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGR 354
Query: 231 SDEKWTVTSIITSEELFVLQRYENELKFKSEE 262
S E SI+T ++ ++ E+ + K E
Sbjct: 355 SGES---ISIVTERDVDLVHAIEDRVGTKLSE 383
>sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DED1 PE=3 SV=1
Length = 650
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 31/233 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L L+E+ L +V+ LV+DE D + + + +++++ RQT+ SA
Sbjct: 302 GRLSDLLERGRVSLANVKYLVLDEADRMLDMGFE-PQIRQIVDGCDMPPVGERQTLMFSA 360
Query: 60 SIP---QH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLS 114
+ P QH R FL SD + + V + + R + K TLL
Sbjct: 361 TFPDDIQHLARDFL----------SDYIFLSVGKVGSTSENITQRILYVEDMDKKSTLLD 410
Query: 115 LIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
L+ + +IFV E + A ++ DF + + G + + R
Sbjct: 411 LLSASNDGLTLIFV----ETKRMADELTDFLIMQDFRATAIHG---------DRTQSERE 457
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L + G LLV+T +AARG+D+P TH+ N+DLP DY+HR GRTGR
Sbjct: 458 RALAAFKNGNANLLVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGR 510
>sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DED1 PE=3 SV=1
Length = 617
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 105/233 (45%), Gaps = 31/233 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLL--ASYSSCNNRQTVFASA 59
G L L+E+ L +V+ LV+DE D + + + ++ ++ RQT+ SA
Sbjct: 287 GRLNDLLERGKVSLSNVKYLVLDEADRMLDMGFE-PQIRHIVEDCDMPPTGERQTLMFSA 345
Query: 60 SIP---QH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLS 114
+ P QH R FLH D + + V + + R + + K LL
Sbjct: 346 TFPHDIQHLARDFLH----------DYIFLSVGRVGSTSENITQRILYVENRDKNSALLD 395
Query: 115 LIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
L+ + +IFV E + A ++ +F + + G + + R
Sbjct: 396 LLAASNDNLTLIFV----ETKRMADQLTDFLIMQNFSATAIHG---------DRSQAERE 442
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L R G +LV+T +AARG+D+P TH+ N+DLP DY+HR GRTGR
Sbjct: 443 RALAAFRSGRANILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGR 495
>sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DED1 PE=1 SV=2
Length = 604
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 31/233 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLL--ASYSSCNNRQTVFASA 59
G L L+E+ L +V+ LV+DE D + + + ++ ++ + RQT+ SA
Sbjct: 284 GRLNDLLERGKISLANVKYLVLDEADRMLDMGFE-PQIRHIVEDCDMTPVGERQTLMFSA 342
Query: 60 SIP---QH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLS 114
+ P QH R FL SD + + V + + + + + K LL
Sbjct: 343 TFPADIQHLARDFL----------SDYIFLSVGRVGSTSENITQKVLYVENQDKKSALLD 392
Query: 115 LIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
L+ + +IFV E + A ++ +F + + G + + R
Sbjct: 393 LLSASTDGLTLIFV----ETKRMADQLTDFLIMQNFRATAIHG---------DRTQSERE 439
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L R G LLV+T +AARG+D+P TH+ N+DLP DY+HR GRTGR
Sbjct: 440 RALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGR 492
>sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DED1 PE=3 SV=1
Length = 604
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 31/233 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLL--ASYSSCNNRQTVFASA 59
G L L+E+ L +V+ LV+DE D + + + ++ ++ + RQT+ SA
Sbjct: 284 GRLNDLLERGKISLANVKYLVLDEADRMLDMGFE-PQIRHIVEDCDMTPVGERQTLMFSA 342
Query: 60 SIP---QH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLS 114
+ P QH R FL SD + + V + + + + + K LL
Sbjct: 343 TFPADIQHLARDFL----------SDYIFLSVGRVGSTSENITQKVLYVENQDKKSALLD 392
Query: 115 LIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
L+ + +IFV E + A ++ +F + + G + + R
Sbjct: 393 LLSASTDGLTLIFV----ETKRMADQLTDFLIMQNFRATAIHG---------DRTQSERE 439
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+L R G LLV+T +AARG+D+P TH+ N+DLP DY+HR GRTGR
Sbjct: 440 RALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGR 492
>sp|A6VKC3|RHLB_ACTSZ ATP-dependent RNA helicase RhlB OS=Actinobacillus succinogenes
(strain ATCC 55618 / 130Z) GN=rhlB PE=3 SV=1
Length = 413
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 107/226 (47%), Gaps = 19/226 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +++ I + +QV+V+DE D +F+ + ++ LL + +R T+ SA++
Sbjct: 141 GRVIDYVKQGIIRFNDIQVVVLDEADRMFDLGF-IKDIRYLLRKCPAPKSRLTMLFSATL 199
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
R L +D ++ + ++ + + K L++L++ + P
Sbjct: 200 SYKVREL-----AFEDMNDPEYIEIEPLQKTGHRIKEELFYPSNRDKMALLMTLLEEEWP 254
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E IIF + + G +L+ V LL ++ R A L +
Sbjct: 255 ERCIIFANTKHRCEEIWG----------YLAAD---GQRVGLLTGDVAQKKRLALLKQFT 301
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
G +LV+TD+AARG+ +P+ TH++N+DLP DY+HR GRTGR
Sbjct: 302 DGELDILVATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGR 347
>sp|Q6LLL5|RHLB_PHOPR ATP-dependent RNA helicase RhlB OS=Photobacterium profundum GN=rhlB
PE=3 SV=1
Length = 437
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 19/226 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + ++ + L S+QV+V+DE D +F+ + ++ L + R + SA++
Sbjct: 143 GRIIDFYKQRVIDLASIQVVVLDEADRMFDLGF-IKDIRFLFRRMPAPKARLNMLFSATL 201
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
+ L + + VV V + + + K + L +LI+ + P
Sbjct: 202 SYRVKEL--AFEHMNSPESVV---VEPNQKTGHLIQEELFYPSNQEKMRLLQTLIEEEWP 256
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
+ IIF + G+ + V L+ V +LE+
Sbjct: 257 DRAIIFANTKHRCEDIWGHLAADNHRVGLLNGDVPQKKRVRILEQ-------------FT 303
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
QG +LV+TD+AARG+ +P+ TH+YN+DLP A DY+HR GRTGR
Sbjct: 304 QGDIDILVATDVAARGLHIPQVTHVYNYDLPDDAEDYVHRIGRTGR 349
>sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=FAL1 PE=3 SV=1
Length = 399
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 135/268 (50%), Gaps = 31/268 (11%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + +I++ + +++VL++DE D LF +Q+ + K L + Q V SA
Sbjct: 153 GRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPP-----SVQVVVVSA 207
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK-MKYQTLLSLIQS 118
++P R L + K+T +D V + V + S + +V C ++ K+ TL L +
Sbjct: 208 TLP--REVLE--MTSKFT-TDPVKILVKRDEISLSGIKQYYVQCEREDWKFDTLCDLYDN 262
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASL 177
+IF +T L V++L++ K + V+ + +M + R + +
Sbjct: 263 LTITQAVIFC--------------NTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIM 308
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ R+G +L+STD+ ARGID+ + + + N+DLP +Y+HR GR+GR F K T
Sbjct: 309 NDFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGR--FG-RKGTA 365
Query: 238 TSIITSEELFVLQRYENELKFKSEELTL 265
++IT +++ L+ +E K +E+ +
Sbjct: 366 INLITKDDVVTLKEFEKYYSTKIKEMPM 393
>sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DED1 PE=3 SV=1
Length = 630
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 107/228 (46%), Gaps = 21/228 (9%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLL--ASYSSCNNRQTVFASA 59
G L L+E+ L S++ LV+DE D + + + ++ ++ +RQT+ SA
Sbjct: 298 GRLKDLLERGRVSLASIKYLVLDEADRMLDMGFE-PQIRHIVQECDMPGVEDRQTLMFSA 356
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ +FL +++ + + V + + + + + K LL L+ ++
Sbjct: 357 TFPKEIQFLARDFLKEY-----IFLSVGRVGSTSENITQKILYVEDEEKKSVLLDLLSAN 411
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
IIF +E + A N L DFL Y + + + R +L
Sbjct: 412 DNGLTIIF----TETKRMADN------LADFL---YDQGFPATAIHGDRSQYEREKALAA 458
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ G +LV+T +AARG+D+P +HI N+DLP DY+HR GRTGR
Sbjct: 459 FKTGTAPILVATAVAARGLDIPNVSHIVNYDLPSDIDDYVHRIGRTGR 506
>sp|Q0I1X0|RHLB_HAES1 ATP-dependent RNA helicase RhlB OS=Haemophilus somnus (strain
129Pt) GN=rhlB PE=3 SV=1
Length = 419
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 25/229 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +++ I +L+ +QV+V+DE D +F+ + ++ LL R T+ SA++
Sbjct: 141 GRVIDYVKQGIIRLDYIQVVVLDEADRMFDLGF-IRDIRYLLRKCPVPQQRLTMLFSATL 199
Query: 62 PQHRR---FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
R F H +D +V + ++ + + K L++L++
Sbjct: 200 SYKVRELAFEH--------MNDPQYVEIEPLQKTGHRIREELFYPSNQDKMALLMTLLEE 251
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ PE IIF + + G +LS V LL ++ R + L
Sbjct: 252 EWPERCIIFSNTKHRCEEIWG----------YLSAD---GHRVGLLTGDVMQKKRLSLLK 298
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ G +LV+TD+AARG+ +P+ TH++N+DLP DY+HR GRTGR
Sbjct: 299 QFTDGTLDILVATDVAARGLHIPDVTHVFNYDLPDDCEDYVHRIGRTGR 347
>sp|Q65RG7|RHLB_MANSM ATP-dependent RNA helicase RhlB OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=rhlB PE=3 SV=1
Length = 417
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 19/220 (8%)
Query: 8 IEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRF 67
++++I L +QV+V+DE D +F+ + ++ L+ S R T+ SA++ R
Sbjct: 145 VKQNIIALSHIQVVVLDEADRMFDLGF-IKDIRYLMRKCPSPKQRLTLLFSATLSYKVRE 203
Query: 68 LHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIF 127
L +D +V V ++ + + K L++L++ + PE IIF
Sbjct: 204 L-----AFEDMNDPEYVEVEPLQKTGHRIKEELFYPSNEDKMPLLITLLEEEWPERCIIF 258
Query: 128 VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYL 187
+ + K G +L+ V LL ++ R + L + G +
Sbjct: 259 ANTKHQCEKIWG----------YLAAD---GHRVGLLTGDVAQKKRLSLLKQFTDGALDI 305
Query: 188 LVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
LV+TD+AARG+ +P+ TH++N+DLP DY+HR GRTGR
Sbjct: 306 LVATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGR 345
>sp|Q15N18|RHLB_PSEA6 ATP-dependent RNA helicase RhlB OS=Pseudoalteromonas atlantica
(strain T6c / ATCC BAA-1087) GN=rhlB PE=3 SV=1
Length = 421
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 9 EKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIP---QHR 65
+++IF L +QV V+DE D +F+ + ++ L R ++ SA++ Q
Sbjct: 147 KQNIFSLAGIQVAVLDEADRMFDLGF-IKDIRYLFNRMPKPTERLSMLFSATLSYRVQEL 205
Query: 66 RFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGI 125
+ H + HV V + + + + K LLSL++ + P+ I
Sbjct: 206 AYEH--------MDNPTHVQVEPERKTGTRIKEELFYPSDEDKMALLLSLMEEEWPDKAI 257
Query: 126 IFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGG 185
+F + K A D+L V LL ++ N R L + G
Sbjct: 258 VFANTKHSCEKVA----------DWLQAD---GHRVGLLSGDVPQNKRLKILEDFTSGKL 304
Query: 186 YLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+LV+TD+AARG+ +P +H++N+DLP A DY+HR GRTGR
Sbjct: 305 DILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGR 346
>sp|B0UUZ9|RHLB_HAES2 ATP-dependent RNA helicase RhlB OS=Haemophilus somnus (strain 2336)
GN=rhlB PE=3 SV=1
Length = 419
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 25/229 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + +++ I +L+ +QV+V+DE D +F+ + ++ LL R T+ SA++
Sbjct: 141 GRVIDYVKQGIIRLDYIQVVVLDEADRMFDLGF-IRDIRYLLRKCPVPQQRLTMLFSATL 199
Query: 62 PQHRR---FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
R F H +D +V + ++ + + K L++L++
Sbjct: 200 SYKVRELAFEH--------MNDPQYVEIEPLQKTGHRIREELFYPSNQDKMALLMTLLEE 251
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ PE IIF + + G +LS V LL ++ R + L
Sbjct: 252 EWPERCIIFSNTKHRCEEIWG----------YLSAD---GHRVGLLTGDVMQKKRLSLLK 298
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ G +LV+TD+AARG+ +P+ TH++N+DLP DY+HR GRTGR
Sbjct: 299 QFTDGTLDVLVATDVAARGLHIPDVTHVFNYDLPDDCEDYVHRIGRTGR 347
>sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 OS=Homo sapiens GN=DDX43
PE=2 SV=2
Length = 648
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 23/228 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G L L + L+++ LV+DE D + + + +K LL +RQTV SA+
Sbjct: 374 GRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRP---DRQTVMTSATW 430
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS-DA 120
P +H Q + +V+V + + S + ++ ++ K+ + + +QS +
Sbjct: 431 PHS---VHRLAQSYLKEPMIVYVGTLDLVAV-SSVKQNIIVTTEEEKWSHMQTFLQSMSS 486
Query: 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLE 179
+ I+FV S+KA + D LS+ G+ V L + R +L
Sbjct: 487 TDKVIVFV------SRKA--------VADHLSSDLILGNISVESLHGDREQRDREKALEN 532
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ G +L++TD+A+RG+D+ + TH+YNFD PR+ +Y+HR GRTGR
Sbjct: 533 FKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGR 580
>sp|Q5W5U4|DDX4_BOVIN Probable ATP-dependent RNA helicase DDX4 OS=Bos taurus GN=DDX4 PE=2
SV=1
Length = 729
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLA--SYSSCNNRQTVFASA 59
G L +I K L V+ LV+DE D + + +KKL++ S RQT+ SA
Sbjct: 426 GRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFG-PEMKKLISCPGMPSKEQRQTLMFSA 484
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L ++ KS+ + V V + + + G+ K + L+ ++++
Sbjct: 485 TFPEEIQRLAG----EFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVEILRNI 540
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV E KKA + FL ++ + E+ R +L +
Sbjct: 541 GDERTMVFV----ETKKKA------DFIATFLCQEKISTTSIHGDREQ---REREQALGD 587
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 588 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGR 635
>sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=ded1 PE=3 SV=1
Length = 678
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 109/229 (47%), Gaps = 23/229 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L LIE+ L++++ LV+DE D + + + +++++ NRQT+ SA
Sbjct: 330 GRLVDLIERGRISLQNIKYLVLDEADRMLDMGFE-PQIRRIVEGEDMPGVQNRQTLMFSA 388
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + D V + V + + + K LL ++ +
Sbjct: 389 TFPRDIQMLARDFLK-----DYVFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTH 443
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSN-SYKGSSDVLLLEEEMNFNSRAASLL 178
+IFV ++K+ ++ L DFL N ++ +S + + R +L
Sbjct: 444 GAGLTLIFV-----ETKRMADS-----LSDFLINQNFPATS----IHGDRTQRERERALE 489
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P TH+ N+DLP DY+HR GRTGR
Sbjct: 490 MFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGR 538
>sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ded1 PE=1 SV=1
Length = 636
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 111/230 (48%), Gaps = 24/230 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLL--ASYSSCNNRQTVFASA 59
G L LI++ L +++ LV+DE D + + + ++ ++ A +S RQT+ SA
Sbjct: 314 GRLVDLIDRGRISLANIKFLVLDEADRMLDMGFE-PQIRHIVEGADMTSVEERQTLMFSA 372
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + D V + V + + + V K LL ++ +
Sbjct: 373 TFPRDIQLLARDFLK-----DYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDILHTL 427
Query: 120 APES-GIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS-YKGSSDVLLLEEEMNFNSRAASL 177
PE +IFV ++K+ + L D+L NS + +S + + R +L
Sbjct: 428 PPEGLTLIFV-----ETKRMADT-----LTDYLLNSNFPATS----IHGDRTQRERERAL 473
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G ++V+T +A+RG+D+P TH+ N+DLP DY+HR GRTGR
Sbjct: 474 ELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGR 523
>sp|Q6FQZ0|DBP8_CANGA ATP-dependent RNA helicase DBP8 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP8 PE=3 SV=1
Length = 437
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 114/255 (44%), Gaps = 28/255 (10%)
Query: 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQ 74
L+ V+ LV+DE D L + + LK + + RQT+ +A+I R L + Q
Sbjct: 153 LKRVKYLVLDEADILLTETFS-NDLKTCVGALPPKEKRQTLLFTATITDQVRALQDAPVQ 211
Query: 75 KWTKS----DVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLI--QSDAPESGIIFV 128
K + +V +V AI PS L+ +V+ + +K L L+ +S A + IIFV
Sbjct: 212 KGKQPLFCYEVENVDNVAI---PSTLNTEYVLVPEHVKEAYLYQLLTCESYANSTAIIFV 268
Query: 129 GEQSEKSKKAGNAPSTTLLVDFLSNSYKG-SSDVLLLEEEMNFNSRAASLLEVRQGGGYL 187
T + L + K V L +M R S+ R +
Sbjct: 269 NR--------------TTAAEVLRRTLKALDVRVASLHSQMPQQERTNSMHRFRANAARV 314
Query: 188 LVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELF 247
L++TD+A+RG+D+P + N+D+P ++HR+GRT R + K S IT ++
Sbjct: 315 LIATDVASRGLDIPTVELVINYDIPSDPDTFIHRSGRTAR---AGRKGDAISFITQRDVS 371
Query: 248 VLQRYENELKFKSEE 262
++ E + K E
Sbjct: 372 RIEAIEARINMKMTE 386
>sp|Q61496|DDX4_MOUSE Probable ATP-dependent RNA helicase DDX4 OS=Mus musculus GN=Ddx4
PE=1 SV=2
Length = 702
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLA--SYSSCNNRQTVFASA 59
G L +I K L+ V+ LV+DE D + + +KKL++ S RQT+ SA
Sbjct: 397 GRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFG-PEMKKLISCPGMPSKEQRQTLLFSA 455
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + KS + V V + + + G+ K + L+ ++++
Sbjct: 456 TFPEEIQRLAG----DFLKSSYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVEILRNI 511
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV E KKA + FL ++ + E+ R +L +
Sbjct: 512 GDERTMVFV----ETKKKA------DFIATFLCQEKISTTSIHGDREQ---REREQALGD 558
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 559 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGR 606
>sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=DED1 PE=3 SV=1
Length = 672
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 110/230 (47%), Gaps = 24/230 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L L+E+ L +V+ LV+DE D + + + +++++ +RQT+ SA
Sbjct: 334 GRLVDLMERGRISLSNVRFLVLDEADRMLDMGFE-PQIRRIVEGEDMPGVMDRQTLMFSA 392
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L +++ V + V + + + K LL ++ S
Sbjct: 393 TFPRDIQLLAKDFLKEY-----VFLSVGRVGSTSENITQKIEYVEDDDKRSVLLDVLAS- 446
Query: 120 APESGI--IFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASL 177
P G+ IFV ++K+ + +L DFL S G++ + + R +L
Sbjct: 447 MPSGGLTLIFV-----ETKRMAD-----MLSDFLLRSKIGATSI---HGDRTQRERERAL 493
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G ++V+T +AARG+D+P TH+ N+DLP DY+HR GRTGR
Sbjct: 494 ELFRSGKTPIMVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGR 543
>sp|Q10055|FAL1_SCHPO ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tif412 PE=1 SV=1
Length = 394
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 123/256 (48%), Gaps = 31/256 (12%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + +I + + +V++L++DE D L N +Q+ + + L + Q V SA
Sbjct: 148 GRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGT-----QVVVVSA 202
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKK-MKYQTLLSLIQS 118
++PQ + N K+T ++ V + V + L F+ K+ K+ TL L +
Sbjct: 203 TLPQDVLEMTN----KFT-TNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDT 257
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNFNSRAASL 177
+IF + + VD+L+ + ++ V + EM R A +
Sbjct: 258 LTITQAVIFCNSRRK--------------VDWLTEKMREANFTVTSMHGEMPQKERDAIM 303
Query: 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237
+ RQG +L+ TDI ARGID+ + + + N+DLP + +Y+HR GR+GR F K
Sbjct: 304 QDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGR--FG-RKGVA 360
Query: 238 TSIITSEELFVLQRYE 253
+ +T+E++ +L+ E
Sbjct: 361 INFVTNEDVRILRDIE 376
>sp|Q49Z29|Y802_STAS1 Probable DEAD-box ATP-dependent RNA helicase SSP0802
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=SSP0802 PE=3 SV=1
Length = 506
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 20/226 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + + + K + L++DE D + N K + RQT+ SA++
Sbjct: 128 GRVIDHLNRRTLKTNDIHTLILDEADEMMNMG--FIDDMKFIMDKIPAEQRQTMLFSATM 185
Query: 62 PQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP 121
P + + +QQ + KS V+ +N P + + I + K+ T S + P
Sbjct: 186 P---KAIQTLVQQ-FMKSPVIVKTMNNEMSDPQIEEY-YTIVKELEKFDTFTSFLDVHQP 240
Query: 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181
E I+F ++K+ + ++ L+ S YK L ++ R L + +
Sbjct: 241 ELAIVF-----GRTKRRVDELTSALI----SKGYKAEG----LHGDITQAKRLEVLKKFK 287
Query: 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+LV+TD+AARG+D+ +H+YNFD+P+ Y HR GRTGR
Sbjct: 288 NDQLDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGR 333
>sp|Q6GWX0|DDX4_PIG Probable ATP-dependent RNA helicase DDX4 OS=Sus scrofa GN=DDX4 PE=2
SV=1
Length = 722
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLA--SYSSCNNRQTVFASA 59
G L +I K L+ ++ LV+DE D + + +KKL++ S RQT+ SA
Sbjct: 422 GRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFG-PEMKKLISCPGMPSKEQRQTLMFSA 480
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L ++ KS+ + V V + + + G+ K + LL ++++
Sbjct: 481 TFPEEIQRL----AAEFLKSNYLFVAVGQVGGACRDVQQADLQVGQYSKREKLLEILRNI 536
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV E KKA + FL ++ + E+ R +L +
Sbjct: 537 GDERTMVFV----ETKKKA------DFIATFLCQEKISTTSIHGDREQ---REREQALGD 583
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 584 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGR 631
>sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP1 PE=1 SV=2
Length = 617
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLA--SYSSCNNRQTVFASA 59
G L L+E+ L +++ LV+DE D + + + ++ ++ S NRQT+ SA
Sbjct: 296 GRLNDLLERGKVSLANIKYLVLDEADRMLDMGFE-PQIRHIVEECDMPSVENRQTLMFSA 354
Query: 60 SIP---QH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLS 114
+ P QH R FL N I + V + + R + K LL
Sbjct: 355 TFPVDIQHLARDFLDNYI----------FLSVGRVGSTSENITQRILYVDDMDKKSALLD 404
Query: 115 LIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
L+ ++ +IFV E + A ++ +F + + G D E E ++
Sbjct: 405 LLSAEHKGLTLIFV----ETKRMADQLTDFLIMQNFKATAIHG--DRTQAERERALSAFK 458
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
A++ ++ LV+T +AARG+D+P TH+ N+DLP DY+HR GRTGR
Sbjct: 459 ANVADI-------LVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGR 504
>sp|Q8DDN6|RHLB_VIBVU ATP-dependent RNA helicase RhlB OS=Vibrio vulnificus (strain CMCP6)
GN=rhlB PE=3 SV=1
Length = 435
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 104/229 (45%), Gaps = 25/229 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + ++ +F L ++Q +V+DE D +F+ + ++ L + R + SA++
Sbjct: 143 GRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGF-IKDIRFLFRRMPAPQERLNMLFSATL 201
Query: 62 P---QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
Q F H + HV V + + + K L +LI+
Sbjct: 202 SYRVQELAFEH--------MHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEE 253
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ P+ IIF + + ++ ++ ++ V LL ++ R L
Sbjct: 254 EWPDRAIIFANTKYK---------CESIWAHLAADGHR----VGLLTGDVPQKKREKILE 300
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ QG LLV+TD+AARG+ +P+ TH++N+DLP DY+HR GRTGR
Sbjct: 301 QFTQGSVDLLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGR 349
>sp|Q7MGP7|RHLB_VIBVY ATP-dependent RNA helicase RhlB OS=Vibrio vulnificus (strain YJ016)
GN=rhlB PE=3 SV=1
Length = 435
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 104/229 (45%), Gaps = 25/229 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + ++ +F L ++Q +V+DE D +F+ + ++ L + R + SA++
Sbjct: 143 GRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGF-IKDIRFLFRRMPAPQERLNMLFSATL 201
Query: 62 P---QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
Q F H + HV V + + + K L +LI+
Sbjct: 202 SYRVQELAFEH--------MHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEE 253
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ P+ IIF + + ++ ++ ++ V LL ++ R L
Sbjct: 254 EWPDRAIIFANTKYK---------CESIWAHLAADGHR----VGLLTGDVPQKKREKILE 300
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ QG LLV+TD+AARG+ +P+ TH++N+DLP DY+HR GRTGR
Sbjct: 301 QFTQGSVDLLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGR 349
>sp|B7VME9|RHLB_VIBSL ATP-dependent RNA helicase RhlB OS=Vibrio splendidus (strain LGP32)
GN=rhlB PE=3 SV=1
Length = 436
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 103/229 (44%), Gaps = 25/229 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + ++ +F L +Q +V+DE D +F+ + ++ L +R + SA++
Sbjct: 143 GRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGF-IKDIRFLFRRMPEPKDRLNMLFSATL 201
Query: 62 P---QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
Q F H + HV V + + + K L +LI+
Sbjct: 202 SYRVQELAFEH--------MHNPEHVVVEPERKTGHRIQEELFYPSNEHKMALLQTLIEE 253
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
+ P+ IIF + + G+ ++ ++ V LL ++ R L
Sbjct: 254 EWPDRAIIFANTKHKCESVWGH---------LAADGHR----VGLLTGDVPQKKREKILE 300
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ +G LLV+TD+AARG+ +P+ TH++NFDLP DY+HR GRTGR
Sbjct: 301 QFTKGDVDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGR 349
>sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP1 PE=3 SV=1
Length = 617
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLA--SYSSCNNRQTVFASA 59
G L L+E+ L +++ LV+DE D + + + ++ ++ S NRQT+ SA
Sbjct: 296 GRLNDLLERGKVSLANIKYLVLDEADRMLDMGFE-PQIRHIVEECDMPSVENRQTLMFSA 354
Query: 60 SIP---QH--RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLS 114
+ P QH R FL N I + V + + R + K LL
Sbjct: 355 TFPVDIQHLARDFLDNYI----------FLSVGRVGSTSENITQRILYVDDMDKKSALLD 404
Query: 115 LIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174
L+ ++ +IFV E + A ++ +F + + G D E E ++
Sbjct: 405 LLSAEHKGLTLIFV----ETKRMADQLTDFLIMQNFKATAIHG--DRTQAERERALSAFK 458
Query: 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
A++ ++ LV+T +AARG+D+P TH+ N+DLP DY+HR GRTGR
Sbjct: 459 ANVADI-------LVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGR 504
>sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=DED1 PE=3
SV=1
Length = 675
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 23/229 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLAS--YSSCNNRQTVFASA 59
G L LIE+ L++++ LV+DE D + + + +++++ +RQT+ SA
Sbjct: 330 GRLVDLIERGRISLQNIKYLVLDEADRMLDMGFE-PQIRRIVEGEDMPQVQDRQTLMFSA 388
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L + D + + V + + + K LL ++ S
Sbjct: 389 TFPRDIQMLARDFLK-----DYIFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHSH 443
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSN-SYKGSSDVLLLEEEMNFNSRAASLL 178
A +IFV ++K+ ++ L DFL N ++ +S + + R +L
Sbjct: 444 ANGLTLIFV-----ETKRMADS-----LSDFLINQNFPATS----IHGDRTQRERERALE 489
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P TH+ N+DLP DY+HR GRTGR
Sbjct: 490 FFRNGRCPILVATAVAARGLDIPHVTHVINYDLPTDVDDYVHRIGRTGR 538
>sp|Q9NQI0|DDX4_HUMAN Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4
PE=1 SV=2
Length = 724
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLA--SYSSCNNRQTVFASA 59
G L +I K L+ ++ LV+DE D + + +KKL++ S RQT+ SA
Sbjct: 424 GRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFG-PEMKKLISCPGMPSKEQRQTLMFSA 482
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L ++ KS+ + V V + + + G+ K + L+ ++++
Sbjct: 483 TFPEEIQRL----AAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNI 538
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV E KKA + FL ++ + E+ R +L +
Sbjct: 539 GDERTMVFV----ETKKKA------DFIATFLCQEKISTTSIHGDREQ---REREQALGD 585
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 586 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGR 633
>sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus subtilis (strain 168)
GN=dbpA PE=1 SV=2
Length = 479
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 40/275 (14%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G + IEK L+ + LVIDE D + N +QV ++ K L + R T+ SA
Sbjct: 129 GRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPT-----ERTTMLFSA 183
Query: 60 SIPQH-----RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLS 114
++PQ R+++ N H+ V A + H + ++ K+ L
Sbjct: 184 TLPQDIEKLSRQYMQNP----------EHIEVKAAGLTTRNIEHAVIQVREENKFSLLKD 233
Query: 115 LIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLL-VDFLSNSYKGSSDVLLLEEEMNFNSR 173
++ ++ P+S IIF ++K+ N + L + + + G +++E+ R
Sbjct: 234 VLMTENPDSCIIFC-----RTKEHVNQLTDELDDLGYPCDKIHGG----MIQED-----R 279
Query: 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233
+ E ++G LV+TD+AARGID+ + + N+DLP Y+HR GRTGR +
Sbjct: 280 FDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGR---AGN 336
Query: 234 KWTVTSIITSEELFVLQRYENELKFKSEELTLQTQ 268
K S +T+ E L E + F+ +++ +Q
Sbjct: 337 KGKAISFVTAFEKRFLADIEEYIGFEIQKIEAPSQ 371
>sp|Q4R5S7|DDX4_MACFA Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis
GN=DDX4 PE=2 SV=1
Length = 725
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLA--SYSSCNNRQTVFASA 59
G L +I K L+ ++ LV+DE D + + +KKL++ S RQT+ SA
Sbjct: 425 GRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFG-PEMKKLISCPGMPSKEQRQTLMFSA 483
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L ++ KS+ + V V + + + G+ K + L+ ++++
Sbjct: 484 TFPEEIQRL----AAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNI 539
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV E KKA + FL ++ + E+ R +L +
Sbjct: 540 GDERTMVFV----ETKKKA------DFIATFLCQEKISTTSIHGDREQ---REREQALGD 586
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+ H+ NFDLP + +Y+HR GRTGR
Sbjct: 587 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGR 634
>sp|Q8EJQ5|RHLB_SHEON ATP-dependent RNA helicase RhlB OS=Shewanella oneidensis (strain
MR-1) GN=rhlB PE=3 SV=1
Length = 439
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 25/229 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61
G + + + I L ++Q +V+DE D +F+ + ++ L + + R + SA++
Sbjct: 143 GRIIDYVRQGIINLNAIQAVVLDEADRMFDLGF-IKDIRFLFRRMPNADQRLNMLFSATL 201
Query: 62 P---QHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS 118
Q + H +D V V + + + ++ K + LL+LI+
Sbjct: 202 SMKVQELAYDH--------MNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLTLIEE 253
Query: 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178
D PE I+F + S L +L V LL ++ R L
Sbjct: 254 DWPEKAIVFSNTKH----------SCENLWSWLEGD---GHRVGLLTGDVPQKKRIRILE 300
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
+ QG +LV+TD+AARG+ + + +H+YN+DLP DY+HR GRTGR
Sbjct: 301 QFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGR 349
>sp|Q6CB69|DED1_YARLI ATP-dependent RNA helicase DED1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DED1 PE=3 SV=1
Length = 618
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 108/229 (47%), Gaps = 23/229 (10%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASA 59
G L LI++ LE+++ LV+DE D + + Q+ ++ + + N RQT+ SA
Sbjct: 303 GRLVDLIDRGKVSLENIKYLVLDEADRMLDMGFEPQIRAIVQG-SGMPDVNERQTLMFSA 361
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P++ + L + D + + V + + + K LL ++ +
Sbjct: 362 TFPRNIQMLARDFLK-----DYIFLSVGRVGSTSENITQKVEYVEDGDKISALLDILSAA 416
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFL-SNSYKGSSDVLLLEEEMNFNSRAASLL 178
++FV ++K+ + L D L S + +S + + + R +L
Sbjct: 417 GKGLTLVFV-----ETKRGAD-----YLCDVLQSEDFPATS----IHGDRSQRDRERALE 462
Query: 179 EVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+P TH+ N+DLP DY+HR GRTGR
Sbjct: 463 MFRDGTTPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGR 511
>sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Rattus norvegicus
GN=Ddx4 PE=2 SV=1
Length = 713
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 20/228 (8%)
Query: 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLA--SYSSCNNRQTVFASA 59
G L +I K L+ V+ LV+DE D + + +KKL++ S RQT+ SA
Sbjct: 409 GRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFG-PEMKKLISCPGMPSKEQRQTLLFSA 467
Query: 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD 119
+ P+ + L ++ KS+ + V V + + + G K + L+ ++++
Sbjct: 468 TFPEEIQRLAG----EFLKSNYLFVAVGQVGGACRDVQQSILQVGPVFKKRKLVEILRNI 523
Query: 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179
E ++FV E KKA + FL ++ + E+ R +L +
Sbjct: 524 GDERPMVFV----ETKKKA------DFIATFLCQEKISTTSIHGDREQ---REREQALGD 570
Query: 180 VRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGR 227
R G +LV+T +AARG+D+ H+ NF+LP + +Y+HR GRTGR
Sbjct: 571 FRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGR 618
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,175,285
Number of Sequences: 539616
Number of extensions: 3797245
Number of successful extensions: 12213
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 10092
Number of HSP's gapped (non-prelim): 1504
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)