Query 024287
Match_columns 269
No_of_seqs 119 out of 1681
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 03:28:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328 Predicted ATP-dependen 100.0 1E-50 2.3E-55 317.9 18.8 242 1-266 153-395 (400)
2 KOG0331 ATP-dependent RNA heli 100.0 4.3E-47 9.4E-52 326.4 19.2 242 1-265 223-469 (519)
3 KOG0330 ATP-dependent RNA heli 100.0 2.2E-47 4.7E-52 310.9 15.7 243 1-267 187-430 (476)
4 COG0513 SrmB Superfamily II DN 100.0 1.9E-45 4.2E-50 326.7 23.7 237 1-261 158-398 (513)
5 KOG0326 ATP-dependent RNA heli 100.0 4.7E-46 1E-50 296.4 15.2 240 1-265 211-450 (459)
6 PRK04837 ATP-dependent RNA hel 100.0 5.6E-43 1.2E-47 306.8 23.5 244 1-266 141-384 (423)
7 PRK11776 ATP-dependent RNA hel 100.0 1E-42 2.2E-47 308.2 23.5 241 1-266 131-371 (460)
8 KOG0333 U5 snRNP-like RNA heli 100.0 9.6E-43 2.1E-47 293.2 20.0 234 1-256 380-636 (673)
9 KOG0342 ATP-dependent RNA heli 100.0 1.1E-42 2.4E-47 290.9 18.3 230 1-253 213-446 (543)
10 PTZ00110 helicase; Provisional 100.0 2.8E-42 6.1E-47 309.1 21.6 242 1-265 261-505 (545)
11 PRK11634 ATP-dependent RNA hel 100.0 6E-42 1.3E-46 309.9 23.1 243 1-267 133-375 (629)
12 PRK10590 ATP-dependent RNA hel 100.0 9.2E-42 2E-46 301.2 22.9 239 1-263 133-371 (456)
13 PLN00206 DEAD-box ATP-dependen 100.0 1.7E-41 3.6E-46 303.1 22.3 241 1-265 254-496 (518)
14 PRK04537 ATP-dependent RNA hel 100.0 3.6E-41 7.8E-46 303.0 22.4 243 1-265 142-385 (572)
15 KOG0345 ATP-dependent RNA heli 100.0 2.6E-41 5.5E-46 281.4 18.2 233 1-255 139-375 (567)
16 PRK01297 ATP-dependent RNA hel 100.0 1E-40 2.2E-45 296.3 23.0 243 1-265 221-464 (475)
17 KOG0335 ATP-dependent RNA heli 100.0 5.5E-41 1.2E-45 284.3 19.5 243 1-264 210-464 (482)
18 KOG0343 RNA Helicase [RNA proc 100.0 1E-40 2.2E-45 282.6 18.0 246 1-267 198-445 (758)
19 PRK11192 ATP-dependent RNA hel 100.0 6.2E-40 1.3E-44 288.7 23.9 237 1-261 131-369 (434)
20 KOG0336 ATP-dependent RNA heli 100.0 7.6E-41 1.6E-45 274.6 16.6 240 1-265 351-593 (629)
21 KOG0327 Translation initiation 100.0 2.1E-40 4.6E-45 270.2 17.8 240 1-266 153-392 (397)
22 PTZ00424 helicase 45; Provisio 100.0 1.6E-39 3.5E-44 283.7 24.1 243 1-267 154-397 (401)
23 KOG0340 ATP-dependent RNA heli 100.0 2.2E-40 4.8E-45 267.2 15.1 245 1-267 133-384 (442)
24 KOG0332 ATP-dependent RNA heli 100.0 1.2E-39 2.6E-44 264.5 16.8 243 1-266 215-466 (477)
25 KOG0338 ATP-dependent RNA heli 100.0 9.2E-40 2E-44 274.5 12.8 231 1-255 310-544 (691)
26 KOG0341 DEAD-box protein abstr 100.0 2.6E-39 5.6E-44 264.0 9.9 231 1-256 310-541 (610)
27 KOG0339 ATP-dependent RNA heli 100.0 8.4E-37 1.8E-41 256.6 18.6 241 1-265 354-596 (731)
28 KOG0347 RNA helicase [RNA proc 100.0 1E-37 2.3E-42 264.2 11.0 240 1-258 321-584 (731)
29 KOG4284 DEAD box protein [Tran 100.0 7.8E-37 1.7E-41 263.1 15.6 221 1-244 151-379 (980)
30 KOG0346 RNA helicase [RNA proc 100.0 2.2E-36 4.7E-41 250.2 16.7 232 1-256 153-422 (569)
31 KOG0348 ATP-dependent RNA heli 100.0 7.1E-36 1.5E-40 252.4 13.8 237 1-256 270-566 (708)
32 TIGR00614 recQ_fam ATP-depende 100.0 4.3E-34 9.4E-39 253.2 21.4 217 14-253 124-342 (470)
33 PRK11057 ATP-dependent DNA hel 100.0 6E-34 1.3E-38 258.6 22.0 228 1-252 123-351 (607)
34 TIGR03817 DECH_helic helicase/ 100.0 3.7E-34 8E-39 263.9 19.4 227 14-265 154-409 (742)
35 PLN03137 ATP-dependent DNA hel 100.0 1.6E-33 3.5E-38 260.4 20.2 212 16-253 580-796 (1195)
36 TIGR01389 recQ ATP-dependent D 100.0 6.4E-33 1.4E-37 252.3 22.0 228 1-252 111-339 (591)
37 KOG0344 ATP-dependent RNA heli 100.0 1.3E-33 2.8E-38 241.6 14.7 243 1-264 270-515 (593)
38 KOG0350 DEAD-box ATP-dependent 100.0 2.5E-33 5.3E-38 235.3 12.5 237 1-256 278-552 (620)
39 KOG0334 RNA helicase [RNA proc 100.0 1.8E-32 3.9E-37 248.0 14.8 240 1-264 496-740 (997)
40 PRK13767 ATP-dependent helicas 100.0 3E-31 6.6E-36 249.0 21.6 250 1-267 154-423 (876)
41 KOG0337 ATP-dependent RNA heli 100.0 3.6E-32 7.9E-37 224.1 13.3 241 1-265 148-389 (529)
42 COG0514 RecQ Superfamily II DN 100.0 1.9E-31 4.2E-36 233.8 17.2 218 15-255 129-348 (590)
43 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.4E-30 3E-35 240.5 18.9 233 1-265 98-354 (819)
44 PRK09751 putative ATP-dependen 100.0 1.8E-30 4E-35 248.6 19.7 256 1-267 107-410 (1490)
45 KOG0329 ATP-dependent RNA heli 100.0 2.3E-32 5E-37 212.2 4.3 208 1-266 169-378 (387)
46 PRK02362 ski2-like helicase; P 100.0 1.4E-30 3.1E-35 242.0 15.8 237 1-244 121-397 (737)
47 PRK11664 ATP-dependent RNA hel 100.0 6.3E-30 1.4E-34 236.6 17.4 219 1-248 101-343 (812)
48 PRK00254 ski2-like helicase; P 100.0 1.6E-29 3.5E-34 234.3 17.6 230 1-245 122-389 (720)
49 PHA02653 RNA helicase NPH-II; 100.0 9.9E-29 2.1E-33 223.5 18.9 210 14-253 288-523 (675)
50 TIGR00580 mfd transcription-re 100.0 1.7E-28 3.8E-33 228.9 20.6 216 10-256 566-788 (926)
51 PRK10917 ATP-dependent DNA hel 100.0 6.6E-28 1.4E-32 221.5 20.5 231 11-265 377-615 (681)
52 PRK11131 ATP-dependent RNA hel 100.0 2.8E-28 6.1E-33 230.2 18.2 231 1-265 171-429 (1294)
53 PRK01172 ski2-like helicase; P 100.0 4.5E-28 9.8E-33 223.7 15.7 227 1-243 119-377 (674)
54 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.5E-27 3.3E-32 217.5 18.5 189 15-230 169-379 (844)
55 TIGR00643 recG ATP-dependent D 100.0 2.2E-27 4.9E-32 216.6 19.5 233 11-264 351-591 (630)
56 TIGR01587 cas3_core CRISPR-ass 100.0 1.5E-27 3.4E-32 205.2 15.7 202 19-243 126-335 (358)
57 PRK10689 transcription-repair 100.0 1.1E-26 2.3E-31 221.2 21.5 214 11-256 716-937 (1147)
58 COG1201 Lhr Lhr-like helicases 99.9 9.1E-27 2E-31 211.5 18.6 243 2-269 132-389 (814)
59 PRK09401 reverse gyrase; Revie 99.9 2.1E-25 4.5E-30 212.9 22.1 185 1-213 187-410 (1176)
60 COG1202 Superfamily II helicas 99.9 2E-26 4.4E-31 197.1 13.2 213 5-245 327-554 (830)
61 TIGR01967 DEAH_box_HrpA ATP-de 99.9 9.2E-26 2E-30 213.9 17.2 217 1-248 164-408 (1283)
62 KOG0349 Putative DEAD-box RNA 99.9 8.1E-26 1.8E-30 187.7 14.6 223 1-242 347-613 (725)
63 COG1111 MPH1 ERCC4-like helica 99.9 1.8E-24 4E-29 183.1 19.9 123 108-245 349-482 (542)
64 KOG0351 ATP-dependent DNA heli 99.9 5.9E-25 1.3E-29 203.3 18.0 214 18-253 386-601 (941)
65 COG1204 Superfamily II helicas 99.9 6.5E-25 1.4E-29 201.3 16.9 229 3-241 132-405 (766)
66 PHA02558 uvsW UvsW helicase; P 99.9 1.7E-23 3.6E-28 186.8 17.4 209 13-243 218-454 (501)
67 COG1200 RecG RecG-like helicas 99.9 5.1E-23 1.1E-27 181.0 18.9 234 8-266 375-618 (677)
68 PRK14701 reverse gyrase; Provi 99.9 3.8E-23 8.3E-28 201.6 19.7 221 1-250 186-462 (1638)
69 PRK04914 ATP-dependent helicas 99.9 1.3E-22 2.8E-27 189.4 19.0 125 107-244 479-605 (956)
70 TIGR01054 rgy reverse gyrase. 99.9 5.9E-22 1.3E-26 189.6 21.6 183 1-213 186-409 (1171)
71 TIGR03158 cas3_cyano CRISPR-as 99.9 2.9E-22 6.3E-27 171.5 16.8 187 15-226 143-357 (357)
72 PRK13766 Hef nuclease; Provisi 99.9 6.2E-22 1.4E-26 186.0 20.2 121 107-244 347-479 (773)
73 PRK12898 secA preprotein trans 99.9 7.1E-22 1.5E-26 176.9 16.1 171 52-247 409-589 (656)
74 TIGR00603 rad25 DNA repair hel 99.9 1.2E-21 2.6E-26 177.3 17.7 124 107-248 480-611 (732)
75 KOG0352 ATP-dependent DNA heli 99.9 1.9E-22 4E-27 167.5 10.4 210 17-250 141-368 (641)
76 KOG0354 DEAD-box like helicase 99.9 6.3E-21 1.4E-25 170.2 16.1 123 108-245 396-530 (746)
77 KOG0952 DNA/RNA helicase MER3/ 99.9 2.8E-21 6.2E-26 175.2 14.0 225 14-250 235-497 (1230)
78 TIGR00631 uvrb excinuclease AB 99.9 9.8E-21 2.1E-25 172.1 17.4 134 105-255 424-564 (655)
79 KOG0947 Cytoplasmic exosomal R 99.9 4.8E-21 1E-25 172.2 15.0 231 4-243 390-722 (1248)
80 PRK09694 helicase Cas3; Provis 99.9 1E-20 2.2E-25 175.7 16.2 196 19-230 441-664 (878)
81 KOG0950 DNA polymerase theta/e 99.9 3.8E-21 8.1E-26 173.4 12.6 241 4-252 330-619 (1008)
82 PRK05298 excinuclease ABC subu 99.9 2.7E-20 5.8E-25 170.2 16.9 143 106-265 429-587 (652)
83 KOG0951 RNA helicase BRR2, DEA 99.8 3.8E-21 8.3E-26 176.7 10.9 224 14-248 434-706 (1674)
84 COG1197 Mfd Transcription-repa 99.8 5.4E-20 1.2E-24 170.4 17.4 204 8-243 707-912 (1139)
85 PRK09200 preprotein translocas 99.8 2.9E-20 6.4E-25 169.9 13.1 130 101-248 406-545 (790)
86 KOG0948 Nuclear exosomal RNA h 99.8 4E-20 8.7E-25 162.7 13.0 229 4-243 222-538 (1041)
87 cd00079 HELICc Helicase superf 99.8 1E-19 2.2E-24 134.0 13.3 126 97-239 3-130 (131)
88 COG1205 Distinct helicase fami 99.8 1.4E-19 2.9E-24 168.6 14.5 227 13-257 191-437 (851)
89 COG4098 comFA Superfamily II D 99.8 1.4E-18 3.1E-23 140.9 18.3 201 17-241 202-413 (441)
90 TIGR03714 secA2 accessory Sec 99.8 4.1E-19 8.8E-24 161.2 15.5 129 101-248 402-541 (762)
91 COG1643 HrpA HrpA-like helicas 99.8 3.7E-19 8E-24 163.3 15.2 218 2-247 148-390 (845)
92 TIGR00595 priA primosomal prot 99.8 2.7E-18 5.9E-23 152.6 19.3 94 144-241 271-378 (505)
93 KOG0353 ATP-dependent DNA heli 99.8 3E-19 6.5E-24 146.8 11.8 216 12-250 210-473 (695)
94 PF00271 Helicase_C: Helicase 99.8 6.9E-20 1.5E-24 122.6 6.7 72 158-229 7-78 (78)
95 PRK05580 primosome assembly pr 99.8 4.8E-18 1E-22 156.2 18.0 96 143-242 438-547 (679)
96 PRK12906 secA preprotein trans 99.8 2.8E-18 6.1E-23 156.2 13.9 126 103-246 420-555 (796)
97 TIGR00963 secA preprotein tran 99.8 7.7E-18 1.7E-22 152.2 16.3 127 104-248 386-521 (745)
98 KOG0922 DEAH-box RNA helicase 99.8 1.2E-17 2.5E-22 146.3 14.5 210 14-248 160-394 (674)
99 COG4581 Superfamily II RNA hel 99.8 2.6E-17 5.6E-22 152.6 16.0 231 4-243 216-536 (1041)
100 COG1061 SSL2 DNA or RNA helica 99.7 3.6E-17 7.8E-22 143.7 15.5 107 109-229 270-377 (442)
101 COG0556 UvrB Helicase subunit 99.7 5.3E-17 1.1E-21 138.8 15.9 177 50-255 385-568 (663)
102 COG1203 CRISPR-associated heli 99.7 1.2E-17 2.5E-22 155.0 12.4 201 19-242 340-548 (733)
103 PRK12900 secA preprotein trans 99.7 8.9E-17 1.9E-21 147.8 15.6 128 102-247 577-714 (1025)
104 smart00490 HELICc helicase sup 99.7 1.7E-16 3.7E-21 106.8 7.6 80 147-229 3-82 (82)
105 KOG0923 mRNA splicing factor A 99.7 1.9E-15 4.1E-20 132.1 14.2 215 12-248 373-610 (902)
106 KOG0920 ATP-dependent RNA heli 99.6 7.3E-16 1.6E-20 141.6 9.9 242 2-269 273-567 (924)
107 PRK11448 hsdR type I restricti 99.6 1.1E-14 2.3E-19 139.4 17.8 115 120-242 697-816 (1123)
108 PLN03142 Probable chromatin-re 99.6 4.8E-14 1E-18 133.0 17.5 134 108-255 472-612 (1033)
109 KOG0924 mRNA splicing factor A 99.6 2.8E-14 6E-19 125.4 13.8 208 13-244 464-697 (1042)
110 KOG4150 Predicted ATP-dependen 99.6 2.3E-14 4.9E-19 123.8 12.9 237 17-267 412-665 (1034)
111 KOG0926 DEAH-box RNA helicase 99.5 6.6E-14 1.4E-18 124.9 9.6 79 161-243 607-703 (1172)
112 PRK12904 preprotein translocas 99.5 8.3E-13 1.8E-17 121.4 15.4 127 101-245 408-574 (830)
113 KOG0949 Predicted helicase, DE 99.4 5.1E-13 1.1E-17 121.5 10.7 82 161-243 965-1047(1330)
114 KOG0953 Mitochondrial RNA heli 99.4 8.3E-12 1.8E-16 107.8 14.8 197 17-250 275-482 (700)
115 PRK13104 secA preprotein trans 99.4 9.4E-12 2E-16 114.8 15.9 128 101-246 422-589 (896)
116 PF06862 DUF1253: Protein of u 99.4 6.6E-11 1.4E-15 102.2 18.9 226 12-252 156-423 (442)
117 PRK13107 preprotein translocas 99.4 2.6E-11 5.5E-16 111.8 16.8 126 103-246 429-593 (908)
118 KOG0925 mRNA splicing factor A 99.3 1.4E-11 3.1E-16 104.9 11.1 203 14-245 156-388 (699)
119 COG1198 PriA Primosomal protei 99.3 1.5E-10 3.2E-15 105.8 17.0 215 14-242 310-601 (730)
120 KOG1123 RNA polymerase II tran 99.3 1.5E-11 3.3E-16 105.1 7.8 215 3-248 413-657 (776)
121 COG1110 Reverse gyrase [DNA re 99.2 1.7E-10 3.6E-15 106.2 13.1 173 14-212 198-416 (1187)
122 TIGR00348 hsdR type I site-spe 99.1 2.8E-09 6E-14 98.6 16.1 112 121-243 514-650 (667)
123 KOG0385 Chromatin remodeling c 99.1 5.3E-09 1.1E-13 93.9 16.6 128 107-248 471-603 (971)
124 TIGR02562 cas3_yersinia CRISPR 99.0 9.5E-09 2.1E-13 96.2 14.5 94 125-231 760-882 (1110)
125 COG4096 HsdR Type I site-speci 99.0 1.5E-09 3.3E-14 98.3 7.5 98 121-230 426-527 (875)
126 KOG0384 Chromodomain-helicase 98.9 1.4E-08 3.1E-13 95.2 11.7 123 120-256 698-825 (1373)
127 TIGR01407 dinG_rel DnaQ family 98.9 6E-08 1.3E-12 92.4 15.0 108 120-243 673-813 (850)
128 PRK12903 secA preprotein trans 98.8 1.6E-07 3.5E-12 86.7 15.1 124 103-246 406-541 (925)
129 PF00270 DEAD: DEAD/DEAH box h 98.8 7E-09 1.5E-13 79.5 4.2 65 1-66 103-167 (169)
130 PRK12326 preprotein translocas 98.8 3.3E-07 7.1E-12 83.4 15.0 169 52-246 363-549 (764)
131 KOG1000 Chromatin remodeling p 98.7 9.7E-07 2.1E-11 76.1 15.7 123 120-256 491-617 (689)
132 PRK08074 bifunctional ATP-depe 98.6 7.6E-07 1.6E-11 85.5 14.3 110 120-243 751-892 (928)
133 cd00268 DEADc DEAD-box helicas 98.6 5.6E-08 1.2E-12 76.9 5.5 66 1-69 127-192 (203)
134 PRK12899 secA preprotein trans 98.6 1.1E-06 2.4E-11 82.0 14.0 125 103-246 548-683 (970)
135 KOG0390 DNA repair protein, SN 98.6 3.1E-07 6.6E-12 84.2 9.8 126 108-244 579-707 (776)
136 KOG0951 RNA helicase BRR2, DEA 98.6 2.1E-06 4.6E-11 81.3 15.2 223 14-267 1250-1511(1674)
137 KOG0392 SNF2 family DNA-depend 98.6 5E-07 1.1E-11 85.1 10.8 129 107-246 1310-1456(1549)
138 PRK11747 dinG ATP-dependent DN 98.5 2E-06 4.4E-11 80.2 14.1 105 120-243 533-673 (697)
139 KOG0387 Transcription-coupled 98.5 1E-06 2.2E-11 79.8 11.4 127 107-246 530-660 (923)
140 COG1199 DinG Rad3-related DNA 98.5 2.1E-06 4.6E-11 80.0 13.7 125 120-261 478-636 (654)
141 PRK12901 secA preprotein trans 98.5 2.9E-06 6.3E-11 79.8 13.9 124 103-245 608-742 (1112)
142 PRK13103 secA preprotein trans 98.4 7.3E-06 1.6E-10 76.6 13.8 125 102-245 428-592 (913)
143 PRK07246 bifunctional ATP-depe 98.4 4.2E-06 9.1E-11 79.3 11.4 118 120-256 646-797 (820)
144 TIGR03117 cas_csf4 CRISPR-asso 98.3 3E-05 6.4E-10 70.9 16.2 118 110-243 460-616 (636)
145 PF13307 Helicase_C_2: Helicas 98.3 1.5E-06 3.3E-11 66.5 5.9 86 114-213 3-92 (167)
146 KOG0389 SNF2 family DNA-depend 98.3 6.2E-06 1.3E-10 74.9 10.2 127 106-246 760-890 (941)
147 KOG0391 SNF2 family DNA-depend 98.2 8.2E-06 1.8E-10 76.9 9.5 126 105-247 1258-1390(1958)
148 TIGR00604 rad3 DNA repair heli 98.2 2.4E-05 5.2E-10 73.4 12.8 82 120-213 521-615 (705)
149 CHL00122 secA preprotein trans 98.2 0.0001 2.3E-09 68.7 16.3 83 103-200 404-490 (870)
150 KOG2340 Uncharacterized conser 98.2 6.2E-06 1.4E-10 71.8 7.3 224 13-251 411-675 (698)
151 PRK14873 primosome assembly pr 98.1 7.8E-05 1.7E-09 68.9 13.4 87 145-244 441-539 (665)
152 COG0553 HepA Superfamily II DN 98.0 3.5E-05 7.5E-10 74.2 10.1 125 107-245 692-823 (866)
153 PF02399 Herpes_ori_bp: Origin 97.9 8.2E-05 1.8E-09 68.7 10.6 90 121-229 282-377 (824)
154 KOG0388 SNF2 family DNA-depend 97.9 3.2E-05 6.9E-10 69.8 7.6 129 105-247 1026-1157(1185)
155 COG4889 Predicted helicase [Ge 97.9 4.3E-06 9.3E-11 76.9 1.1 118 122-240 461-584 (1518)
156 PRK12902 secA preprotein trans 97.8 0.00055 1.2E-08 64.2 14.1 83 104-201 420-506 (939)
157 smart00487 DEXDc DEAD-like hel 97.8 5E-05 1.1E-09 59.1 5.3 66 1-69 113-178 (201)
158 KOG1015 Transcription regulato 97.5 0.00043 9.3E-09 64.7 7.8 127 106-243 1125-1276(1567)
159 KOG0386 Chromatin remodeling c 97.4 0.0006 1.3E-08 64.0 7.3 125 107-245 710-839 (1157)
160 KOG0921 Dosage compensation co 97.3 0.00045 9.8E-09 64.1 6.2 109 121-243 643-773 (1282)
161 smart00492 HELICc3 helicase su 97.3 0.0018 3.9E-08 48.0 7.8 51 163-213 26-79 (141)
162 smart00491 HELICc2 helicase su 97.2 0.0018 4E-08 48.0 7.2 50 164-213 24-80 (142)
163 cd00046 DEXDc DEAD-like helica 97.1 0.00076 1.6E-08 49.1 4.3 55 4-61 90-144 (144)
164 PF13871 Helicase_C_4: Helicas 97.1 0.0028 6.2E-08 52.1 7.8 81 175-256 52-142 (278)
165 PF07652 Flavi_DEAD: Flaviviru 96.9 0.0015 3.2E-08 48.1 4.5 51 12-65 90-140 (148)
166 TIGR00596 rad1 DNA repair prot 96.8 0.0043 9.2E-08 58.8 7.7 27 6-32 20-46 (814)
167 KOG4439 RNA polymerase II tran 96.8 0.0063 1.4E-07 55.4 7.8 93 147-243 762-857 (901)
168 COG0653 SecA Preprotein transl 96.6 0.035 7.6E-07 52.2 11.9 122 105-245 411-546 (822)
169 PRK14873 primosome assembly pr 96.3 0.045 9.8E-07 51.0 10.9 93 106-210 171-265 (665)
170 COG1198 PriA Primosomal protei 96.0 0.027 5.8E-07 52.6 7.4 92 103-207 225-318 (730)
171 PRK10917 ATP-dependent DNA hel 95.9 0.029 6.3E-07 52.7 7.5 78 120-207 309-388 (681)
172 COG1110 Reverse gyrase [DNA re 95.9 0.032 6.9E-07 53.2 7.5 79 108-194 112-191 (1187)
173 KOG1002 Nucleotide excision re 95.7 0.084 1.8E-06 46.6 8.7 124 107-244 620-749 (791)
174 PRK05580 primosome assembly pr 95.6 0.088 1.9E-06 49.5 9.6 92 106-210 173-266 (679)
175 TIGR00595 priA primosomal prot 95.5 0.09 1.9E-06 47.6 8.9 89 107-208 9-99 (505)
176 TIGR00643 recG ATP-dependent D 95.3 0.052 1.1E-06 50.6 6.8 78 120-207 283-362 (630)
177 COG1200 RecG RecG-like helicas 95.0 0.15 3.3E-06 46.8 8.6 88 111-208 300-390 (677)
178 KOG0701 dsRNA-specific nucleas 94.9 0.011 2.4E-07 59.1 1.4 57 173-229 343-399 (1606)
179 COG0610 Type I site-specific r 94.5 1.3 2.8E-05 43.6 14.0 60 182-242 591-651 (962)
180 PF13872 AAA_34: P-loop contai 94.1 0.057 1.2E-06 44.9 3.6 45 19-66 174-225 (303)
181 TIGR00580 mfd transcription-re 93.9 0.18 4E-06 48.9 7.1 79 120-208 499-579 (926)
182 KOG1016 Predicted DNA helicase 93.9 0.52 1.1E-05 44.2 9.3 111 121-242 719-847 (1387)
183 PF10593 Z1: Z1 domain; Inter 93.7 0.32 7E-06 39.4 7.2 100 144-251 96-200 (239)
184 KOG1513 Nuclear helicase MOP-3 93.5 0.097 2.1E-06 48.8 4.2 79 178-256 851-938 (1300)
185 PRK10689 transcription-repair 93.1 0.3 6.6E-06 48.6 7.1 78 120-207 648-727 (1147)
186 PRK12899 secA preprotein trans 92.6 0.055 1.2E-06 51.7 1.4 32 1-32 191-230 (970)
187 TIGR01054 rgy reverse gyrase. 91.4 0.51 1.1E-05 47.2 6.5 64 120-193 120-187 (1171)
188 PRK14701 reverse gyrase; Provi 91.3 0.99 2.1E-05 46.7 8.4 64 120-193 121-187 (1638)
189 PF05621 TniB: Bacterial TniB 91.3 0.24 5.2E-06 41.3 3.5 45 14-58 142-187 (302)
190 PF14617 CMS1: U3-containing 9 90.9 0.14 3E-06 41.7 1.8 27 1-27 185-211 (252)
191 KOG1133 Helicase of the DEAD s 90.5 5.8 0.00013 37.0 11.6 96 105-213 610-720 (821)
192 COG0513 SrmB Superfamily II DN 90.1 1.7 3.6E-05 39.6 8.2 73 124-208 102-180 (513)
193 PF00176 SNF2_N: SNF2 family N 89.7 0.9 2E-05 37.8 5.9 46 18-69 135-181 (299)
194 COG1197 Mfd Transcription-repa 89.3 1.7 3.7E-05 42.7 7.8 78 120-207 642-721 (1139)
195 PRK06893 DNA replication initi 88.9 0.65 1.4E-05 37.4 4.2 50 14-64 88-137 (229)
196 TIGR00963 secA preprotein tran 88.9 0.2 4.4E-06 47.0 1.4 33 1-33 153-192 (745)
197 KOG0389 SNF2 family DNA-depend 88.6 1.9 4.1E-05 40.6 7.2 64 118-197 445-512 (941)
198 PF13401 AAA_22: AAA domain; P 87.9 0.79 1.7E-05 32.9 3.8 36 19-59 89-124 (131)
199 PF00308 Bac_DnaA: Bacterial d 87.8 0.98 2.1E-05 36.1 4.5 89 14-119 94-182 (219)
200 PRK13104 secA preprotein trans 87.7 0.3 6.6E-06 46.7 1.8 31 1-31 179-216 (896)
201 cd00268 DEADc DEAD-box helicas 87.3 4.1 8.9E-05 31.7 7.8 74 120-207 68-148 (203)
202 PRK11634 ATP-dependent RNA hel 85.0 4.6 0.0001 37.8 8.0 76 120-207 73-154 (629)
203 TIGR03714 secA2 accessory Sec 84.0 0.47 1E-05 44.8 1.0 32 1-32 172-210 (762)
204 KOG0989 Replication factor C, 83.7 1.4 3.1E-05 36.8 3.6 53 13-69 125-177 (346)
205 PRK08084 DNA replication initi 83.7 1.9 4.2E-05 34.8 4.4 47 16-63 96-142 (235)
206 PRK12422 chromosomal replicati 83.5 2.6 5.7E-05 37.6 5.5 54 15-69 200-253 (445)
207 PRK08727 hypothetical protein; 83.2 3.1 6.8E-05 33.6 5.4 50 14-64 90-139 (233)
208 PRK05642 DNA replication initi 83.0 1.8 3.9E-05 35.0 4.0 47 15-63 95-141 (234)
209 PRK00149 dnaA chromosomal repl 83.0 2.8 6E-05 37.6 5.5 48 14-63 208-255 (450)
210 PF09848 DUF2075: Uncharacteri 82.3 1.6 3.4E-05 37.7 3.5 32 14-45 80-117 (352)
211 TIGR00614 recQ_fam ATP-depende 81.1 5.1 0.00011 36.1 6.5 60 121-193 51-110 (470)
212 PRK14086 dnaA chromosomal repl 81.0 3.2 7E-05 38.5 5.1 53 15-68 375-427 (617)
213 TIGR00596 rad1 DNA repair prot 80.8 7.6 0.00017 37.5 7.7 50 189-244 431-514 (814)
214 TIGR00362 DnaA chromosomal rep 80.6 3.1 6.8E-05 36.6 4.9 47 15-63 197-243 (405)
215 cd00561 CobA_CobO_BtuR ATP:cor 80.2 2 4.3E-05 32.5 3.0 56 14-71 92-148 (159)
216 PRK14087 dnaA chromosomal repl 80.1 3.3 7.1E-05 37.1 4.9 50 15-65 204-253 (450)
217 PRK11192 ATP-dependent RNA hel 79.2 7.2 0.00016 34.6 6.8 75 121-208 73-153 (434)
218 KOG0331 ATP-dependent RNA heli 78.9 9.9 0.00021 34.5 7.4 95 121-228 165-273 (519)
219 PRK11776 ATP-dependent RNA hel 78.8 9.5 0.00021 34.2 7.5 73 122-208 73-153 (460)
220 TIGR00708 cobA cob(I)alamin ad 78.6 2.9 6.4E-05 32.0 3.5 55 16-72 96-151 (173)
221 PRK09401 reverse gyrase; Revie 78.1 9.7 0.00021 38.5 7.8 63 120-192 122-187 (1176)
222 PF04364 DNA_pol3_chi: DNA pol 77.4 26 0.00056 25.7 8.5 79 109-211 15-95 (137)
223 PF00270 DEAD: DEAD/DEAH box h 77.3 18 0.00039 26.9 7.7 74 120-207 43-124 (169)
224 PRK05986 cob(I)alamin adenolsy 77.0 4.6 0.0001 31.5 4.2 55 16-72 114-169 (191)
225 PRK14088 dnaA chromosomal repl 76.8 5.9 0.00013 35.4 5.5 51 17-68 194-244 (440)
226 KOG0338 ATP-dependent RNA heli 76.7 18 0.00039 32.8 8.1 75 121-208 252-333 (691)
227 TIGR01389 recQ ATP-dependent D 76.6 8.2 0.00018 35.9 6.6 60 121-193 53-112 (591)
228 PRK04537 ATP-dependent RNA hel 76.2 6.8 0.00015 36.3 5.9 72 122-207 85-164 (572)
229 PF02463 SMC_N: RecF/RecN/SMC 75.6 3.6 7.8E-05 32.7 3.5 41 16-59 157-197 (220)
230 PF05707 Zot: Zonular occluden 73.6 4.4 9.6E-05 31.6 3.5 45 17-62 79-127 (193)
231 KOG1513 Nuclear helicase MOP-3 73.5 3.9 8.4E-05 38.8 3.5 40 19-61 407-454 (1300)
232 PF05872 DUF853: Bacterial pro 73.5 5.7 0.00012 35.3 4.3 46 14-60 251-299 (502)
233 KOG0339 ATP-dependent RNA heli 73.4 11 0.00023 34.1 5.9 73 122-207 297-375 (731)
234 PF13177 DNA_pol3_delta2: DNA 73.1 4.2 9.2E-05 30.7 3.2 41 16-60 101-141 (162)
235 PRK07414 cob(I)yrinic acid a,c 72.5 5.9 0.00013 30.5 3.8 53 16-70 114-167 (178)
236 PF13173 AAA_14: AAA domain 72.1 4.5 9.7E-05 29.1 3.0 39 17-61 61-99 (128)
237 PRK10590 ATP-dependent RNA hel 71.7 15 0.00032 33.0 6.8 73 122-208 76-155 (456)
238 PRK07413 hypothetical protein; 71.4 25 0.00054 30.7 7.7 55 16-72 124-179 (382)
239 PRK06526 transposase; Provisio 71.4 8.6 0.00019 31.5 4.8 47 14-62 156-202 (254)
240 COG2109 BtuR ATP:corrinoid ade 71.2 12 0.00027 29.1 5.2 55 17-73 122-177 (198)
241 KOG0390 DNA repair protein, SN 71.2 4.5 9.7E-05 38.4 3.4 47 11-63 370-416 (776)
242 PRK12898 secA preprotein trans 70.8 24 0.00052 33.3 7.9 69 118-202 141-209 (656)
243 PRK04837 ATP-dependent RNA hel 70.4 16 0.00034 32.4 6.6 75 121-208 83-163 (423)
244 PRK14956 DNA polymerase III su 70.0 4.3 9.3E-05 36.5 2.9 38 17-60 121-158 (484)
245 COG1111 MPH1 ERCC4-like helica 69.1 20 0.00044 32.3 6.7 120 122-259 59-189 (542)
246 PRK07003 DNA polymerase III su 69.1 4.6 0.0001 38.4 3.0 28 16-45 118-145 (830)
247 KOG0347 RNA helicase [RNA proc 68.9 9.6 0.00021 34.7 4.7 56 124-192 266-321 (731)
248 PHA03368 DNA packaging termina 68.9 5.9 0.00013 37.0 3.6 40 16-61 351-390 (738)
249 PRK01297 ATP-dependent RNA hel 68.7 30 0.00066 31.1 8.2 74 121-207 162-242 (475)
250 PRK04296 thymidine kinase; Pro 68.5 10 0.00022 29.5 4.5 26 16-46 77-102 (190)
251 COG2812 DnaX DNA polymerase II 68.5 3.8 8.2E-05 37.1 2.3 40 15-60 117-156 (515)
252 PRK13107 preprotein translocas 68.3 2.2 4.7E-05 41.2 0.7 33 1-33 179-218 (908)
253 PRK15483 type III restriction- 68.3 6.2 0.00013 38.6 3.7 72 184-256 501-580 (986)
254 TIGR03420 DnaA_homol_Hda DnaA 68.2 8.2 0.00018 30.6 4.0 46 15-62 88-133 (226)
255 PRK14974 cell division protein 67.6 24 0.00053 30.3 6.9 49 16-66 221-269 (336)
256 PRK12323 DNA polymerase III su 67.5 7.8 0.00017 36.3 4.1 39 16-58 123-161 (700)
257 COG3587 Restriction endonuclea 67.1 5.6 0.00012 38.0 3.1 71 184-255 483-564 (985)
258 COG2256 MGS1 ATPase related to 66.2 6.3 0.00014 34.4 3.0 37 20-64 107-143 (436)
259 PF12846 AAA_10: AAA-like doma 65.8 5.7 0.00012 32.9 2.8 41 17-60 220-260 (304)
260 PRK06620 hypothetical protein; 64.9 11 0.00024 30.0 4.1 43 16-64 84-126 (214)
261 PRK07952 DNA replication prote 64.6 11 0.00023 30.8 4.0 47 15-62 160-206 (244)
262 PF12683 DUF3798: Protein of u 64.5 20 0.00043 29.5 5.4 130 53-216 4-144 (275)
263 PRK11057 ATP-dependent DNA hel 64.4 23 0.0005 33.2 6.6 59 121-192 65-123 (607)
264 PF02572 CobA_CobO_BtuR: ATP:c 64.1 7.7 0.00017 29.7 2.9 53 16-70 95-148 (172)
265 KOG3089 Predicted DEAD-box-con 63.9 5.5 0.00012 31.6 2.1 25 1-25 204-228 (271)
266 TIGR00696 wecB_tagA_cpsF bacte 63.8 57 0.0012 25.1 7.7 70 110-189 35-105 (177)
267 PF01637 Arch_ATPase: Archaeal 63.3 13 0.00028 29.3 4.3 41 19-60 120-164 (234)
268 COG1435 Tdk Thymidine kinase [ 63.1 16 0.00035 28.6 4.5 34 18-57 83-116 (201)
269 PRK08181 transposase; Validate 63.0 10 0.00023 31.3 3.7 45 14-60 164-208 (269)
270 KOG0330 ATP-dependent RNA heli 62.3 31 0.00068 30.1 6.4 86 109-207 117-209 (476)
271 KOG0345 ATP-dependent RNA heli 62.3 35 0.00075 30.6 6.8 74 123-207 81-162 (567)
272 KOG1001 Helicase-like transcri 62.0 0.94 2E-05 42.4 -2.8 122 106-241 521-647 (674)
273 PLN03025 replication factor C 61.6 11 0.00024 32.0 3.8 40 16-60 98-137 (319)
274 PRK14958 DNA polymerase III su 61.0 8 0.00017 35.3 2.9 39 16-58 118-156 (509)
275 PF06068 TIP49: TIP49 C-termin 61.0 9.7 0.00021 33.0 3.2 34 19-58 280-313 (398)
276 PRK07764 DNA polymerase III su 60.8 7.4 0.00016 37.7 2.8 39 16-58 119-157 (824)
277 KOG0952 DNA/RNA helicase MER3/ 60.8 8.6 0.00019 37.7 3.1 48 14-63 1043-1095(1230)
278 TIGR03817 DECH_helic helicase/ 60.3 27 0.0006 33.5 6.5 58 120-192 80-137 (742)
279 PRK12377 putative replication 59.5 16 0.00034 29.9 4.1 45 14-59 160-204 (248)
280 TIGR03117 cas_csf4 CRISPR-asso 59.2 6.9 0.00015 36.6 2.2 18 14-31 203-220 (636)
281 cd06533 Glyco_transf_WecG_TagA 58.9 70 0.0015 24.3 7.5 47 144-190 59-105 (171)
282 KOG0740 AAA+-type ATPase [Post 58.8 36 0.00077 30.2 6.4 83 15-119 243-336 (428)
283 COG1922 WecG Teichoic acid bio 58.8 90 0.002 25.6 8.2 74 108-190 93-167 (253)
284 PTZ00110 helicase; Provisional 58.6 27 0.00059 32.2 6.0 73 121-207 203-282 (545)
285 PRK13766 Hef nuclease; Provisi 58.0 71 0.0015 30.8 8.9 76 120-210 57-139 (773)
286 PLN03137 ATP-dependent DNA hel 58.0 37 0.0008 34.2 6.9 60 121-193 500-561 (1195)
287 PRK07994 DNA polymerase III su 57.9 9.9 0.00021 35.7 3.0 28 16-45 118-145 (647)
288 PRK08116 hypothetical protein; 57.8 17 0.00036 30.1 4.1 49 15-64 176-224 (268)
289 PRK15483 type III restriction- 57.8 25 0.00054 34.7 5.7 37 20-63 204-240 (986)
290 PF03808 Glyco_tran_WecB: Glyc 57.5 74 0.0016 24.2 7.4 47 144-190 61-107 (172)
291 PRK08903 DnaA regulatory inact 57.1 18 0.00039 28.8 4.1 45 16-63 89-133 (227)
292 smart00489 DEXDc3 DEAD-like he 56.8 5.8 0.00013 33.2 1.2 14 17-30 236-249 (289)
293 smart00488 DEXDc2 DEAD-like he 56.8 5.8 0.00013 33.2 1.2 14 17-30 236-249 (289)
294 PHA00350 putative assembly pro 56.8 22 0.00048 31.2 4.8 44 19-63 83-147 (399)
295 PHA03372 DNA packaging termina 56.4 17 0.00036 33.8 4.0 42 14-61 296-337 (668)
296 PRK05728 DNA polymerase III su 55.2 83 0.0018 23.2 7.8 82 104-210 10-93 (142)
297 PRK07246 bifunctional ATP-depe 54.7 8.8 0.00019 37.2 2.2 16 15-30 434-449 (820)
298 TIGR00678 holB DNA polymerase 54.2 12 0.00027 28.8 2.7 29 15-45 94-122 (188)
299 TIGR02881 spore_V_K stage V sp 54.1 31 0.00067 28.2 5.1 45 19-64 107-154 (261)
300 PHA02544 44 clamp loader, smal 53.9 23 0.0005 29.8 4.5 40 16-58 99-138 (316)
301 PF10657 RC-P840_PscD: Photosy 53.6 17 0.00037 25.8 2.9 37 174-210 64-106 (144)
302 COG0514 RecQ Superfamily II DN 53.4 32 0.00069 31.9 5.4 59 121-192 57-115 (590)
303 PF00448 SRP54: SRP54-type pro 53.4 62 0.0013 25.3 6.5 49 15-65 81-129 (196)
304 cd00046 DEXDc DEAD-like helica 53.2 74 0.0016 22.1 7.3 60 120-193 29-88 (144)
305 PF05127 Helicase_RecD: Helica 53.1 20 0.00044 27.6 3.6 34 18-62 91-124 (177)
306 PF00004 AAA: ATPase family as 53.0 24 0.00052 24.8 3.9 15 18-32 59-73 (132)
307 PF02562 PhoH: PhoH-like prote 52.7 37 0.0008 26.9 5.1 34 19-59 121-154 (205)
308 PRK06835 DNA replication prote 52.5 21 0.00046 30.5 3.9 48 14-63 243-290 (329)
309 PRK12723 flagellar biosynthesi 52.4 25 0.00055 30.8 4.5 49 15-64 252-300 (388)
310 COG1485 Predicted ATPase [Gene 52.2 17 0.00037 31.2 3.3 47 15-64 128-174 (367)
311 PRK04132 replication factor C 51.8 23 0.00051 34.4 4.5 38 17-58 630-667 (846)
312 PRK07413 hypothetical protein; 51.8 25 0.00053 30.7 4.2 55 16-72 304-360 (382)
313 PRK14951 DNA polymerase III su 51.7 15 0.00032 34.4 3.1 28 16-45 123-150 (618)
314 PRK09112 DNA polymerase III su 51.7 15 0.00033 31.7 3.1 39 16-58 140-178 (351)
315 PRK14949 DNA polymerase III su 51.4 14 0.00031 36.0 3.0 28 16-45 118-145 (944)
316 COG0593 DnaA ATPase involved i 51.2 27 0.00058 30.8 4.4 51 17-68 175-225 (408)
317 PRK00440 rfc replication facto 51.2 32 0.0007 28.8 5.0 39 16-58 101-139 (319)
318 COG1224 TIP49 DNA helicase TIP 51.0 17 0.00036 31.5 3.0 34 19-58 293-326 (450)
319 PRK08451 DNA polymerase III su 50.8 16 0.00035 33.4 3.2 40 15-58 115-154 (535)
320 PRK14961 DNA polymerase III su 50.6 15 0.00032 31.9 2.8 39 16-58 118-156 (363)
321 PRK14960 DNA polymerase III su 50.5 15 0.00034 34.5 3.0 40 16-60 117-156 (702)
322 PF13604 AAA_30: AAA domain; P 50.5 17 0.00036 28.5 2.8 40 15-60 91-130 (196)
323 PRK08074 bifunctional ATP-depe 50.1 11 0.00025 37.1 2.2 18 14-31 452-469 (928)
324 PRK14959 DNA polymerase III su 49.9 26 0.00057 32.8 4.3 15 16-30 118-132 (624)
325 PF00265 TK: Thymidine kinase; 48.6 39 0.00084 26.0 4.5 11 18-28 77-87 (176)
326 PHA00012 I assembly protein 48.6 40 0.00088 28.9 4.9 52 16-68 80-135 (361)
327 PRK14969 DNA polymerase III su 48.0 17 0.00036 33.4 2.8 39 16-58 118-156 (527)
328 PF03969 AFG1_ATPase: AFG1-lik 48.0 23 0.00049 30.8 3.5 47 15-64 125-171 (362)
329 TIGR01407 dinG_rel DnaQ family 47.6 13 0.00028 36.3 2.1 17 15-31 438-454 (850)
330 PRK08691 DNA polymerase III su 47.5 20 0.00044 33.9 3.3 39 16-58 118-156 (709)
331 COG0497 RecN ATPase involved i 47.3 40 0.00088 31.0 5.0 83 18-117 454-536 (557)
332 KOG0329 ATP-dependent RNA heli 47.2 38 0.00083 27.8 4.4 74 123-208 112-191 (387)
333 PRK14964 DNA polymerase III su 47.0 18 0.00039 32.8 2.8 28 16-45 115-142 (491)
334 cd00009 AAA The AAA+ (ATPases 46.8 41 0.00088 23.8 4.4 31 14-46 81-111 (151)
335 PRK09200 preprotein translocas 46.7 69 0.0015 31.0 6.7 62 116-192 114-176 (790)
336 PF03354 Terminase_1: Phage Te 46.6 22 0.00048 32.1 3.4 38 17-58 123-160 (477)
337 TIGR01448 recD_rel helicase, p 46.5 25 0.00055 33.6 3.9 38 16-60 415-452 (720)
338 PRK14952 DNA polymerase III su 46.5 20 0.00043 33.4 3.0 28 16-45 117-144 (584)
339 PRK12904 preprotein translocas 46.4 78 0.0017 30.8 6.9 62 116-193 117-179 (830)
340 TIGR01447 recD exodeoxyribonuc 46.2 28 0.00061 32.4 4.0 39 15-60 257-295 (586)
341 KOG1132 Helicase of the DEAD s 45.8 1.3E+02 0.0028 29.4 8.1 28 186-213 627-656 (945)
342 KOG2170 ATPase of the AAA+ sup 45.5 47 0.001 28.1 4.7 52 16-69 177-233 (344)
343 PRK07940 DNA polymerase III su 44.9 33 0.00072 30.2 4.1 43 16-63 116-158 (394)
344 PRK14965 DNA polymerase III su 44.7 21 0.00045 33.2 2.9 29 15-45 117-145 (576)
345 PRK13342 recombination factor 44.7 25 0.00054 31.1 3.3 39 17-63 92-130 (413)
346 PRK11747 dinG ATP-dependent DN 44.5 12 0.00026 35.6 1.4 15 17-31 246-260 (697)
347 PRK06645 DNA polymerase III su 44.2 24 0.00051 32.2 3.2 27 16-44 127-153 (507)
348 PF01695 IstB_IS21: IstB-like 44.2 13 0.00028 28.6 1.3 44 14-59 105-148 (178)
349 PRK05563 DNA polymerase III su 44.1 23 0.0005 32.8 3.1 16 15-30 117-132 (559)
350 PRK09111 DNA polymerase III su 44.1 30 0.00066 32.3 3.9 40 15-58 130-169 (598)
351 KOG2228 Origin recognition com 43.9 55 0.0012 28.2 5.0 58 3-62 123-180 (408)
352 COG1196 Smc Chromosome segrega 43.8 31 0.00067 35.1 4.2 38 19-59 1090-1127(1163)
353 PRK13103 secA preprotein trans 43.7 95 0.0021 30.5 7.1 69 110-194 112-181 (913)
354 PRK10536 hypothetical protein; 43.6 34 0.00073 28.2 3.6 33 19-58 178-210 (262)
355 PRK14953 DNA polymerase III su 43.5 23 0.00049 32.2 2.9 16 15-30 117-132 (486)
356 PRK10875 recD exonuclease V su 43.4 29 0.00064 32.5 3.7 40 14-60 262-301 (615)
357 PRK14957 DNA polymerase III su 43.4 24 0.00051 32.5 3.0 39 16-58 118-156 (546)
358 COG1205 Distinct helicase fami 43.3 91 0.002 30.6 7.0 62 121-193 115-176 (851)
359 PF05496 RuvB_N: Holliday junc 43.1 19 0.00042 29.0 2.1 16 15-30 99-114 (233)
360 COG0470 HolB ATPase involved i 42.4 25 0.00054 29.5 2.9 39 16-58 108-146 (325)
361 PRK13341 recombination factor 42.2 35 0.00076 32.7 4.0 40 17-64 109-148 (725)
362 PRK14962 DNA polymerase III su 41.9 53 0.0012 29.7 5.0 16 15-30 115-130 (472)
363 KOG0391 SNF2 family DNA-depend 41.8 22 0.00047 35.8 2.6 38 18-61 738-775 (1958)
364 KOG2680 DNA helicase TIP49, TB 41.8 32 0.00069 29.1 3.3 34 19-58 290-323 (454)
365 KOG1015 Transcription regulato 41.5 27 0.00058 34.3 3.1 38 18-61 822-859 (1567)
366 TIGR00631 uvrb excinuclease AB 41.5 1.5E+02 0.0032 28.2 8.0 110 100-221 34-172 (655)
367 PF07517 SecA_DEAD: SecA DEAD- 41.5 12 0.00026 30.9 0.8 19 15-33 195-213 (266)
368 KOG2004 Mitochondrial ATP-depe 41.4 25 0.00054 33.4 2.8 42 1-46 492-533 (906)
369 COG3587 Restriction endonuclea 40.6 46 0.00099 32.3 4.4 39 20-66 208-247 (985)
370 TIGR02746 TraC-F-type type-IV 40.4 28 0.0006 33.7 3.2 32 16-47 636-669 (797)
371 KOG0387 Transcription-coupled 40.2 63 0.0014 31.1 5.2 39 19-63 339-377 (923)
372 TIGR00096 probable S-adenosylm 40.2 80 0.0017 26.3 5.4 65 124-203 27-91 (276)
373 cd01524 RHOD_Pyr_redox Member 40.1 48 0.001 21.8 3.5 36 121-169 51-86 (90)
374 PRK03692 putative UDP-N-acetyl 39.6 2.1E+02 0.0045 23.3 7.8 45 144-190 118-163 (243)
375 PRK04195 replication factor C 39.5 45 0.00098 30.2 4.2 41 17-59 98-138 (482)
376 CHL00181 cbbX CbbX; Provisiona 39.5 74 0.0016 26.6 5.2 46 19-65 124-173 (287)
377 PRK07471 DNA polymerase III su 39.0 30 0.00066 30.1 2.9 28 16-45 140-167 (365)
378 PRK14955 DNA polymerase III su 38.9 50 0.0011 29.0 4.3 28 15-44 125-152 (397)
379 TIGR00604 rad3 DNA repair heli 38.6 14 0.00031 35.2 0.9 18 14-32 218-235 (705)
380 KOG0334 RNA helicase [RNA proc 38.3 99 0.0021 30.6 6.3 58 122-192 439-496 (997)
381 PRK12402 replication factor C 38.0 36 0.00079 28.8 3.3 39 16-58 124-162 (337)
382 cd01120 RecA-like_NTPases RecA 38.0 40 0.00086 24.6 3.2 46 15-61 83-137 (165)
383 PTZ00112 origin recognition co 37.9 61 0.0013 32.1 4.8 42 16-60 868-909 (1164)
384 COG4098 comFA Superfamily II D 37.7 2.8E+02 0.006 24.2 8.1 104 101-228 122-231 (441)
385 KOG0342 ATP-dependent RNA heli 37.3 86 0.0019 28.4 5.3 60 121-192 154-213 (543)
386 KOG0343 RNA Helicase [RNA proc 37.2 58 0.0013 30.0 4.3 57 121-192 141-198 (758)
387 PRK09087 hypothetical protein; 37.1 65 0.0014 25.8 4.4 41 19-63 89-129 (226)
388 KOG1133 Helicase of the DEAD s 36.8 12 0.00027 35.0 0.2 14 19-32 350-363 (821)
389 PRK00411 cdc6 cell division co 36.7 80 0.0017 27.5 5.3 26 18-44 139-164 (394)
390 smart00450 RHOD Rhodanese Homo 36.7 89 0.0019 20.3 4.5 37 120-169 55-92 (100)
391 TIGR00929 VirB4_CagE type IV s 36.6 39 0.00084 32.6 3.5 31 17-47 629-659 (785)
392 cd03239 ABC_SMC_head The struc 36.6 60 0.0013 24.9 4.0 44 15-60 114-157 (178)
393 KOG0990 Replication factor C, 36.3 39 0.00084 28.8 3.0 38 17-58 131-168 (360)
394 COG1875 NYN ribonuclease and A 36.1 44 0.00095 29.1 3.3 33 19-58 353-385 (436)
395 KOG0385 Chromatin remodeling c 35.9 1.3E+02 0.0028 29.1 6.4 60 120-195 216-278 (971)
396 PF13304 AAA_21: AAA domain; P 35.8 48 0.001 26.2 3.6 40 19-60 259-298 (303)
397 TIGR02928 orc1/cdc6 family rep 35.7 47 0.001 28.6 3.6 13 18-30 130-142 (365)
398 KOG0933 Structural maintenance 35.6 39 0.00085 33.2 3.2 47 4-58 1096-1142(1174)
399 COG2255 RuvB Holliday junction 35.4 27 0.00058 29.3 1.9 26 1-30 91-116 (332)
400 PRK08769 DNA polymerase III su 35.3 35 0.00076 29.1 2.7 41 16-60 112-152 (319)
401 PRK06647 DNA polymerase III su 35.2 63 0.0014 30.0 4.5 16 15-30 117-132 (563)
402 KOG0991 Replication factor C, 34.4 39 0.00084 27.6 2.6 49 16-68 112-160 (333)
403 KOG0741 AAA+-type ATPase [Post 34.4 57 0.0012 30.0 3.8 48 15-62 596-650 (744)
404 PF02602 HEM4: Uroporphyrinoge 34.3 79 0.0017 25.0 4.5 76 106-193 101-177 (231)
405 cd06578 HemD Uroporphyrinogen- 34.2 2.3E+02 0.005 22.2 7.8 76 105-192 104-181 (239)
406 COG0466 Lon ATP-dependent Lon 34.1 43 0.00093 31.8 3.2 41 1-46 404-445 (782)
407 PRK06827 phosphoribosylpyropho 34.1 1.5E+02 0.0032 26.1 6.3 51 144-195 280-330 (382)
408 PF02142 MGS: MGS-like domain 34.0 74 0.0016 21.4 3.7 47 145-194 20-70 (95)
409 KOG0298 DEAD box-containing he 33.8 14 0.00031 37.0 0.1 65 174-241 1258-1323(1394)
410 cd01518 RHOD_YceA Member of th 33.6 1.5E+02 0.0032 19.8 5.7 38 119-169 59-97 (101)
411 PRK06921 hypothetical protein; 32.9 71 0.0015 26.4 4.1 48 14-63 174-226 (266)
412 PRK04841 transcriptional regul 32.8 64 0.0014 31.6 4.4 42 19-63 123-164 (903)
413 smart00493 TOPRIM topoisomeras 32.7 1.3E+02 0.0028 18.8 5.6 38 159-197 23-60 (76)
414 PRK05707 DNA polymerase III su 32.7 42 0.00092 28.7 2.8 40 15-58 104-143 (328)
415 PTZ00293 thymidine kinase; Pro 32.6 64 0.0014 25.7 3.6 14 16-29 76-89 (211)
416 PRK14948 DNA polymerase III su 32.3 45 0.00097 31.3 3.1 28 16-45 120-147 (620)
417 COG3421 Uncharacterized protei 32.3 4.4E+02 0.0096 25.0 9.2 28 174-201 318-347 (812)
418 cd00032 CASc Caspase, interleu 32.1 2.7E+02 0.0059 22.5 9.1 95 120-223 8-108 (243)
419 PRK07399 DNA polymerase III su 32.1 1.2E+02 0.0027 25.7 5.5 39 16-59 123-161 (314)
420 PRK09751 putative ATP-dependen 31.9 1.6E+02 0.0035 30.9 7.0 84 121-208 37-130 (1490)
421 PRK14950 DNA polymerase III su 31.9 70 0.0015 29.8 4.3 16 15-30 118-133 (585)
422 TIGR02880 cbbX_cfxQ probable R 31.7 1.1E+02 0.0023 25.6 5.0 45 19-64 123-171 (284)
423 PRK14971 DNA polymerase III su 31.6 61 0.0013 30.4 3.8 42 14-60 118-159 (614)
424 cd00338 Ser_Recombinase Serine 31.3 1.2E+02 0.0025 21.6 4.6 11 36-46 51-61 (137)
425 PRK08939 primosomal protein Dn 31.2 63 0.0014 27.3 3.6 46 14-60 214-260 (306)
426 KOG2035 Replication factor C, 31.0 73 0.0016 26.8 3.7 51 16-70 126-176 (351)
427 COG2842 Uncharacterized ATPase 31.0 43 0.00093 28.1 2.4 30 15-46 163-192 (297)
428 PHA03333 putative ATPase subun 30.5 75 0.0016 30.3 4.1 40 16-61 293-332 (752)
429 cd03240 ABC_Rad50 The catalyti 30.4 84 0.0018 24.6 4.0 45 15-60 137-182 (204)
430 PRK10869 recombination and rep 30.4 71 0.0015 29.6 4.0 84 17-117 452-535 (553)
431 PRK14963 DNA polymerase III su 30.2 87 0.0019 28.6 4.5 15 15-29 114-128 (504)
432 TIGR02760 TraI_TIGR conjugativ 30.2 7.9E+02 0.017 27.2 12.9 41 14-60 526-566 (1960)
433 cd01523 RHOD_Lact_B Member of 29.8 92 0.002 20.8 3.7 37 120-169 60-96 (100)
434 PRK06646 DNA polymerase III su 29.7 1.3E+02 0.0028 22.6 4.6 86 100-211 6-93 (154)
435 PRK10865 protein disaggregatio 29.6 52 0.0011 32.3 3.1 44 19-64 273-318 (857)
436 PHA02533 17 large terminase pr 29.2 82 0.0018 29.0 4.2 41 17-60 169-209 (534)
437 PF05970 PIF1: PIF1-like helic 29.2 41 0.00089 29.2 2.2 45 13-59 98-149 (364)
438 KOG0341 DEAD-box protein abstr 29.2 70 0.0015 28.1 3.4 66 120-192 245-310 (610)
439 TIGR03744 traC_PFL_4706 conjug 29.1 44 0.00096 32.9 2.6 40 18-60 734-773 (893)
440 TIGR00634 recN DNA repair prot 29.1 79 0.0017 29.3 4.1 84 17-117 462-545 (563)
441 PRK11034 clpA ATP-dependent Cl 28.7 62 0.0013 31.2 3.4 45 18-64 279-326 (758)
442 cd03276 ABC_SMC6_euk Eukaryoti 28.5 96 0.0021 24.2 4.0 47 15-62 129-176 (198)
443 KOG0479 DNA replication licens 28.5 81 0.0017 29.4 3.8 37 8-46 389-425 (818)
444 cd01526 RHOD_ThiF Member of th 28.5 1.2E+02 0.0026 21.3 4.2 38 120-170 71-110 (122)
445 TIGR00763 lon ATP-dependent pr 28.5 91 0.002 30.3 4.5 28 1-31 401-428 (775)
446 PRK09189 uroporphyrinogen-III 28.3 2.5E+02 0.0054 22.4 6.5 74 108-192 103-178 (240)
447 KOG0346 RNA helicase [RNA proc 28.2 1.4E+02 0.003 26.9 5.0 67 121-198 93-164 (569)
448 COG1099 Predicted metal-depend 28.0 2.5E+02 0.0053 22.8 6.0 50 147-200 170-219 (254)
449 PRK08058 DNA polymerase III su 27.9 61 0.0013 27.7 3.0 40 15-58 108-147 (329)
450 KOG1942 DNA helicase, TBP-inte 27.8 59 0.0013 27.5 2.7 33 19-57 298-330 (456)
451 PRK05917 DNA polymerase III su 27.7 62 0.0013 27.2 2.9 41 16-60 94-134 (290)
452 PF01443 Viral_helicase1: Vira 27.7 80 0.0017 25.0 3.5 23 188-210 184-206 (234)
453 COG3973 Superfamily I DNA and 27.6 44 0.00096 31.1 2.1 28 15-44 526-553 (747)
454 PRK06731 flhF flagellar biosyn 27.6 1.2E+02 0.0025 25.2 4.4 46 16-63 153-198 (270)
455 PHA03371 circ protein; Provisi 27.5 97 0.0021 24.8 3.7 36 194-229 30-79 (240)
456 PF03266 NTPase_1: NTPase; In 27.3 79 0.0017 24.0 3.2 29 16-44 94-123 (168)
457 PRK07133 DNA polymerase III su 27.1 62 0.0014 31.0 3.1 28 16-45 117-144 (725)
458 PLN00206 DEAD-box ATP-dependen 27.0 2.1E+02 0.0046 26.2 6.5 74 121-207 196-275 (518)
459 PLN02205 alpha,alpha-trehalose 26.9 2.9E+02 0.0064 27.3 7.6 95 107-207 356-457 (854)
460 cd00267 ABC_ATPase ABC (ATP-bi 26.9 1E+02 0.0022 22.7 3.8 41 16-58 97-137 (157)
461 KOG0335 ATP-dependent RNA heli 26.8 1.4E+02 0.003 27.0 5.0 72 122-207 153-231 (482)
462 smart00382 AAA ATPases associa 26.5 1.6E+02 0.0036 20.1 4.8 16 18-33 79-94 (148)
463 PRK13767 ATP-dependent helicas 26.4 1.7E+02 0.0036 29.0 5.9 67 122-192 85-154 (876)
464 COG1484 DnaC DNA replication p 26.4 82 0.0018 25.8 3.3 33 15-47 165-197 (254)
465 cd03227 ABC_Class2 ABC-type Cl 26.2 1.1E+02 0.0024 22.8 3.9 40 17-58 99-138 (162)
466 PRK13889 conjugal transfer rel 26.2 90 0.002 31.2 4.0 44 11-60 427-470 (988)
467 TIGR00635 ruvB Holliday juncti 26.1 98 0.0021 25.8 3.9 16 16-31 80-95 (305)
468 PRK07276 DNA polymerase III su 25.9 83 0.0018 26.4 3.3 28 16-45 103-130 (290)
469 TIGR03015 pepcterm_ATPase puta 25.8 1E+02 0.0022 25.0 3.9 14 17-30 123-136 (269)
470 KOG0327 Translation initiation 25.6 91 0.002 27.2 3.5 68 177-248 115-182 (397)
471 PRK06964 DNA polymerase III su 25.5 1.2E+02 0.0026 26.2 4.3 39 16-58 131-169 (342)
472 COG1199 DinG Rad3-related DNA 25.2 36 0.00078 32.1 1.2 18 15-32 218-235 (654)
473 TIGR02768 TraA_Ti Ti-type conj 25.1 1.1E+02 0.0023 29.7 4.3 43 12-60 434-476 (744)
474 TIGR03346 chaperone_ClpB ATP-d 24.9 68 0.0015 31.5 3.0 45 18-64 267-313 (852)
475 PF09707 Cas_Cas2CT1978: CRISP 24.9 1.6E+02 0.0036 19.6 3.9 51 159-210 24-82 (86)
476 PRK14970 DNA polymerase III su 24.9 90 0.002 27.0 3.5 16 15-30 106-121 (367)
477 cd03278 ABC_SMC_barmotin Barmo 24.7 1.3E+02 0.0027 23.5 4.0 42 16-60 134-175 (197)
478 PRK06305 DNA polymerase III su 24.3 69 0.0015 28.8 2.7 28 16-45 120-147 (451)
479 PRK10787 DNA-binding ATP-depen 24.3 1.5E+02 0.0032 29.0 5.0 29 1-32 403-431 (784)
480 PRK07993 DNA polymerase III su 24.2 70 0.0015 27.4 2.7 41 15-59 106-146 (334)
481 TIGR01277 thiQ thiamine ABC tr 23.8 1.1E+02 0.0023 24.1 3.5 44 15-59 144-187 (213)
482 PRK13709 conjugal transfer nic 23.8 8.6E+02 0.019 26.5 10.5 40 15-60 498-537 (1747)
483 TIGR03345 VI_ClpV1 type VI sec 23.8 87 0.0019 30.8 3.5 43 19-63 282-326 (852)
484 cd03769 SR_IS607_transposase_l 23.7 1.6E+02 0.0034 21.3 4.1 13 35-47 47-59 (134)
485 COG0478 RIO-like serine/threon 23.7 40 0.00087 28.2 1.0 45 145-203 205-249 (304)
486 TIGR01873 cas_CT1978 CRISPR-as 23.6 1.6E+02 0.0034 19.8 3.7 44 159-202 24-71 (87)
487 PRK06090 DNA polymerase III su 23.5 94 0.002 26.5 3.3 41 15-59 106-146 (319)
488 PF07517 SecA_DEAD: SecA DEAD- 23.5 3.2E+02 0.007 22.6 6.3 60 110-178 107-166 (266)
489 cd01528 RHOD_2 Member of the R 23.4 1.6E+02 0.0035 19.6 4.0 38 120-170 57-95 (101)
490 PLN02955 8-amino-7-oxononanoat 23.4 66 0.0014 29.1 2.4 40 20-64 281-320 (476)
491 PRK13826 Dtr system oriT relax 23.3 1.1E+02 0.0024 31.0 4.0 44 11-60 462-505 (1102)
492 smart00851 MGS MGS-like domain 22.9 1.2E+02 0.0026 20.0 3.2 43 147-193 22-64 (90)
493 PRK09183 transposase/IS protei 22.9 1.3E+02 0.0028 24.7 3.9 32 15-46 162-193 (259)
494 KOG2028 ATPase related to the 22.6 69 0.0015 28.0 2.2 38 19-64 224-261 (554)
495 cd03275 ABC_SMC1_euk Eukaryoti 22.4 1.3E+02 0.0029 24.2 3.9 42 17-60 177-218 (247)
496 smart00857 Resolvase Resolvase 22.3 1.7E+02 0.0036 21.2 4.2 13 35-47 50-62 (148)
497 PRK06871 DNA polymerase III su 22.3 85 0.0018 26.9 2.8 39 16-58 106-144 (325)
498 PF09949 DUF2183: Uncharacteri 22.2 2.7E+02 0.0059 19.1 8.1 50 106-165 49-98 (100)
499 TIGR02639 ClpA ATP-dependent C 22.2 1E+02 0.0022 29.7 3.6 42 19-62 276-320 (731)
500 PRK05928 hemD uroporphyrinogen 22.1 3.2E+02 0.007 21.6 6.2 73 110-193 112-186 (249)
No 1
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-50 Score=317.92 Aligned_cols=242 Identities=24% Similarity=0.388 Sum_probs=226.2
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
|||++++++++.++.+.++++|+||+|.|++.| +...+..+.+.++ +..|++++|||+|..+....+.++ .+
T Consensus 153 PGrv~dmikr~~L~tr~vkmlVLDEaDemL~kg-fk~Qiydiyr~lp--~~~Qvv~~SATlp~eilemt~kfm-----td 224 (400)
T KOG0328|consen 153 PGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKG-FKEQIYDIYRYLP--PGAQVVLVSATLPHEILEMTEKFM-----TD 224 (400)
T ss_pred CchHHHHHHhccccccceeEEEeccHHHHHHhh-HHHHHHHHHHhCC--CCceEEEEeccCcHHHHHHHHHhc-----CC
Confidence 999999999999999999999999999999998 5589999999986 899999999999999887765554 67
Q ss_pred eeEEeecCcccCCCcceeEEEEecCc-chHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKK-MKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS 159 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (269)
++.+.+.+.+.+..++.++|+.+..+ +|++.|.++.....-.+.+|||||+.. +..+.+.+.+. ++
T Consensus 225 pvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~k----------VdwLtekm~~~---nf 291 (400)
T KOG0328|consen 225 PVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRK----------VDWLTEKMREA---NF 291 (400)
T ss_pred ceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccch----------hhHHHHHHHhh---Cc
Confidence 88999999999999999999999775 599999999998888899999999885 67788888776 78
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEE
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~ 239 (269)
.+...||+|++++|++++++|++|..++|++||+.+||+|+|.+++|||||+|.+.+.|+||+||.||.| ++|.++.
T Consensus 292 tVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFG---RkGvain 368 (400)
T KOG0328|consen 292 TVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG---RKGVAIN 368 (400)
T ss_pred eeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccC---CcceEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred ecCchhHHHHHHHHHHhcCcccccccc
Q 024287 240 IITSEELFVLQRYENELKFKSEELTLQ 266 (269)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (269)
|+..+|...+..+++.+...+.++|++
T Consensus 369 FVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 369 FVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred EecHHHHHHHHHHHHHHhhhcccccch
Confidence 999999999999999999999999986
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-47 Score=326.36 Aligned_cols=242 Identities=26% Similarity=0.383 Sum_probs=212.7
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||||+|++..+.++|+++.++|+||||+|++.| +.+.++.|+..++ ++..|++++|||+|..+..++..+. . +
T Consensus 223 PGRl~d~le~g~~~l~~v~ylVLDEADrMldmG-Fe~qI~~Il~~i~-~~~rQtlm~saTwp~~v~~lA~~fl----~-~ 295 (519)
T KOG0331|consen 223 PGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG-FEPQIRKILSQIP-RPDRQTLMFSATWPKEVRQLAEDFL----N-N 295 (519)
T ss_pred ChHHHHHHHcCCccccceeEEEeccHHhhhccc-cHHHHHHHHHhcC-CCcccEEEEeeeccHHHHHHHHHHh----c-C
Confidence 999999999999999999999999999999999 5699999999994 2555999999999999988876554 3 5
Q ss_pred eeEEeecC--cccCCCcceeEEEEecCcchHHHHHHHHhhc---CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhc
Q 024287 81 VVHVHVNA--IKPLPSCLHHRFVICGKKMKYQTLLSLIQSD---APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY 155 (269)
Q Consensus 81 ~~~~~~~~--~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~---~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (269)
+..+.+.. ......++.|....|+...|...+..+|... .++++||||+++.+| .++...+...
T Consensus 296 ~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~----------~~l~~~l~~~- 364 (519)
T KOG0331|consen 296 PIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTC----------DELARNLRRK- 364 (519)
T ss_pred ceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhH----------HHHHHHHHhc-
Confidence 55665543 4467788999999999888999888888765 467999999999974 4477777765
Q ss_pred CCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCe
Q 024287 156 KGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235 (269)
Q Consensus 156 ~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g 235 (269)
++++..+||+.++.+|+.+++.|++|+..||||||+++||+|+|+|++|||||+|.+.++|+||+||+||.| .+|
T Consensus 365 --~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~---~~G 439 (519)
T KOG0331|consen 365 --GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAG---KKG 439 (519)
T ss_pred --CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCC---CCc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999988 899
Q ss_pred EEEEecCchhHHHHHHHHHHhcCccccccc
Q 024287 236 TVTSIITSEELFVLQRYENELKFKSEELTL 265 (269)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
.+++|++..+......+.+.++-.-+++|.
T Consensus 440 ~A~tfft~~~~~~a~~l~~~l~e~~q~v~~ 469 (519)
T KOG0331|consen 440 TAITFFTSDNAKLARELIKVLREAGQTVPP 469 (519)
T ss_pred eEEEEEeHHHHHHHHHHHHHHHHccCCCCh
Confidence 999999999999998888888655555443
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-47 Score=310.93 Aligned_cols=243 Identities=28% Similarity=0.411 Sum_probs=223.9
Q ss_pred CchhhHHHH-hCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIE-KHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~-~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
||||.+++. .+.+++++++++|+||||++++.. +...+..|++.++ .++|+++||||+|..+..|... ...
T Consensus 187 PGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~d-F~~~ld~ILk~ip--~erqt~LfsATMt~kv~kL~ra-----sl~ 258 (476)
T KOG0330|consen 187 PGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMD-FEEELDYILKVIP--RERQTFLFSATMTKKVRKLQRA-----SLD 258 (476)
T ss_pred cHHHHHHHHhccCccHHHhHHHhhchHHhhhhhh-hHHHHHHHHHhcC--ccceEEEEEeecchhhHHHHhh-----ccC
Confidence 899999999 689999999999999999999988 5599999999987 9999999999999998876532 336
Q ss_pred ceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS 159 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (269)
+++.+.......+..++.|+|+.++..+|...|..+++...+..++|||++-.+ +..++-.|... ++
T Consensus 259 ~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~t----------t~~la~~L~~l---g~ 325 (476)
T KOG0330|consen 259 NPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNT----------TRFLALLLRNL---GF 325 (476)
T ss_pred CCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccch----------HHHHHHHHHhc---Cc
Confidence 788889988889999999999999999999999999999888999999999886 44467777777 78
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEE
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~ 239 (269)
.+..+||.|+++.|...++.|++|...||||||+++||+|+|.+++|||||+|.+..+|+||+||+||.| +.|.++.
T Consensus 326 ~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG---rsG~~It 402 (476)
T KOG0330|consen 326 QAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG---RSGKAIT 402 (476)
T ss_pred ceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC---CCcceEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred ecCchhHHHHHHHHHHhcCccccccccc
Q 024287 240 IITSEELFVLQRYENELKFKSEELTLQT 267 (269)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (269)
+++-+|.+.+++++..++....+.+++.
T Consensus 403 lVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 403 LVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred EEehhhhHHHHHHHHHHhcCCCccCcch
Confidence 9999999999999999999998876653
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-45 Score=326.68 Aligned_cols=237 Identities=31% Similarity=0.461 Sum_probs=213.7
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||||+|+++.+.++++++.++|+||||+|++.| +.+.+..|+..++ .+.|+++||||+|..+..+...+.. +
T Consensus 158 PGRllD~i~~~~l~l~~v~~lVlDEADrmLd~G-f~~~i~~I~~~~p--~~~qtllfSAT~~~~i~~l~~~~l~-----~ 229 (513)
T COG0513 158 PGRLLDLIKRGKLDLSGVETLVLDEADRMLDMG-FIDDIEKILKALP--PDRQTLLFSATMPDDIRELARRYLN-----D 229 (513)
T ss_pred ccHHHHHHHcCCcchhhcCEEEeccHhhhhcCC-CHHHHHHHHHhCC--cccEEEEEecCCCHHHHHHHHHHcc-----C
Confidence 999999999999999999999999999999999 5699999999987 5899999999999987777655442 5
Q ss_pred eeEEeecCccc--CCCcceeEEEEecCcc-hHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC
Q 024287 81 VVHVHVNAIKP--LPSCLHHRFVICGKKM-KYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG 157 (269)
Q Consensus 81 ~~~~~~~~~~~--~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (269)
+..+.+..... ....+.|.++.+.... |...|..+++.....++||||+++..+ ..+...|...
T Consensus 230 p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~----------~~l~~~l~~~--- 296 (513)
T COG0513 230 PVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLV----------EELAESLRKR--- 296 (513)
T ss_pred CcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHH----------HHHHHHHHHC---
Confidence 55666664443 8889999999999876 999999999988888999999999874 4477888877
Q ss_pred CCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEE
Q 024287 158 SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237 (269)
Q Consensus 158 ~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~ 237 (269)
++.+..+||+|++.+|.++++.|++|+.+||||||+++||+|+|++++|||||+|.++++|+||+||+||.| ..|.+
T Consensus 297 g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG---~~G~a 373 (513)
T COG0513 297 GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAG---RKGVA 373 (513)
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCC---CCCeE
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred EEecCch-hHHHHHHHHHHhcCccc
Q 024287 238 TSIITSE-ELFVLQRYENELKFKSE 261 (269)
Q Consensus 238 ~~~~~~~-~~~~~~~~~~~~~~~~~ 261 (269)
+.|+++. |...+..+++.++..++
T Consensus 374 i~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 374 ISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred EEEeCcHHHHHHHHHHHHHHhcccc
Confidence 9999976 99999999999876644
No 5
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-46 Score=296.35 Aligned_cols=240 Identities=25% Similarity=0.353 Sum_probs=217.5
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
|||++|+..+|.-.++++.++|+||||+|++..+. +.++.++..++ .++|++++|||+|-.+..+.+.++ .+
T Consensus 211 PGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~-~~~e~li~~lP--~~rQillySATFP~tVk~Fm~~~l-----~k 282 (459)
T KOG0326|consen 211 PGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQ-PIVEKLISFLP--KERQILLYSATFPLTVKGFMDRHL-----KK 282 (459)
T ss_pred ChhHHHHHhcccccchhceEEEechhhhhhchhhh-hHHHHHHHhCC--ccceeeEEecccchhHHHHHHHhc-----cC
Confidence 99999999999999999999999999999988855 99999999987 899999999999998776655443 23
Q ss_pred eeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCc
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSD 160 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (269)
+..+... ++.++.++.|+|..+....|.-.|..++....-.+.||||||... ++.+++.+.+. ++.
T Consensus 283 Py~INLM-~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~r----------VELLAkKITel---Gys 348 (459)
T KOG0326|consen 283 PYEINLM-EELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNR----------VELLAKKITEL---GYS 348 (459)
T ss_pred cceeehh-hhhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchH----------hHHHHHHHHhc---cch
Confidence 4444444 345678899999999999999999999988888999999999886 55577888877 788
Q ss_pred eEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEe
Q 024287 161 VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240 (269)
Q Consensus 161 v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~ 240 (269)
+..+|+.|.++.|..++.+|++|..+.|||||.+.||+|++++++|||||+|.++++|.||+||.||.| ..|.++.+
T Consensus 349 cyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFG---hlGlAInL 425 (459)
T KOG0326|consen 349 CYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFG---HLGLAINL 425 (459)
T ss_pred hhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCC---CcceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCchhHHHHHHHHHHhcCccccccc
Q 024287 241 ITSEELFVLQRYENELKFKSEELTL 265 (269)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
++.+|...+.++++.+|.+|+.+|.
T Consensus 426 ityedrf~L~~IE~eLGtEI~pip~ 450 (459)
T KOG0326|consen 426 ITYEDRFNLYRIEQELGTEIKPIPS 450 (459)
T ss_pred EehhhhhhHHHHHHHhccccccCCC
Confidence 9999999999999999999998884
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.6e-43 Score=306.76 Aligned_cols=244 Identities=26% Similarity=0.371 Sum_probs=209.7
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||||.+++.++.+.+++++++|+||||++++++ +...+..++..++.....+.+++|||++..+..+..... .+
T Consensus 141 P~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~-f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~-----~~ 214 (423)
T PRK04837 141 TGRLIDYAKQNHINLGAIQVVVLDEADRMFDLG-FIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHM-----NN 214 (423)
T ss_pred HHHHHHHHHcCCcccccccEEEEecHHHHhhcc-cHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHC-----CC
Confidence 899999999999999999999999999999988 457888888887655567889999999987665543222 23
Q ss_pred eeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCc
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSD 160 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (269)
+..+.+.........+.+.+.......|...+..++......++||||+++..|+ .+.+.|... ++.
T Consensus 215 p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~----------~l~~~L~~~---g~~ 281 (423)
T PRK04837 215 PEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCE----------EIWGHLAAD---GHR 281 (423)
T ss_pred CEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHH----------HHHHHHHhC---CCc
Confidence 4455555555555667777777777788999999998777789999999998754 477777765 788
Q ss_pred eEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEe
Q 024287 161 VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240 (269)
Q Consensus 161 v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~ 240 (269)
+..+||+|++.+|..+++.|++|+.++||||+++++|+|+|++++||+||+|.+.++|+||+||+||.| ..|.+++|
T Consensus 282 v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G---~~G~ai~~ 358 (423)
T PRK04837 282 VGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG---ASGHSISL 358 (423)
T ss_pred EEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCC---CCeeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 88999999
Q ss_pred cCchhHHHHHHHHHHhcCcccccccc
Q 024287 241 ITSEELFVLQRYENELKFKSEELTLQ 266 (269)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (269)
+++++...+..+++.++.+++..+++
T Consensus 359 ~~~~~~~~~~~i~~~~~~~~~~~~~~ 384 (423)
T PRK04837 359 ACEEYALNLPAIETYIGHSIPVSKYD 384 (423)
T ss_pred eCHHHHHHHHHHHHHhCCCCCCccCC
Confidence 99999999999999998888766554
No 7
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1e-42 Score=308.20 Aligned_cols=241 Identities=25% Similarity=0.369 Sum_probs=210.6
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||||.+++.++.+.++++++||+||+|++++.+ +...+..++..++ ...|++++|||+|+.+..+...+. .+
T Consensus 131 p~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g-~~~~l~~i~~~~~--~~~q~ll~SAT~~~~~~~l~~~~~-----~~ 202 (460)
T PRK11776 131 PGRILDHLRKGTLDLDALNTLVLDEADRMLDMG-FQDAIDAIIRQAP--ARRQTLLFSATYPEGIAAISQRFQ-----RD 202 (460)
T ss_pred hHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC-cHHHHHHHHHhCC--cccEEEEEEecCcHHHHHHHHHhc-----CC
Confidence 899999999999999999999999999999998 4588899998876 789999999999998776654332 33
Q ss_pred eeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCc
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSD 160 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (269)
+..+...... ....+.+.++.++...|...+..++....+.++||||++++.++. +++.|.+. ++.
T Consensus 203 ~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~----------l~~~L~~~---~~~ 268 (460)
T PRK11776 203 PVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQE----------VADALNAQ---GFS 268 (460)
T ss_pred CEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHH----------HHHHHHhC---CCc
Confidence 4444444333 344588888888888899999999988888899999999997555 77777766 688
Q ss_pred eEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEe
Q 024287 161 VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240 (269)
Q Consensus 161 v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~ 240 (269)
+..+||+|++.+|+.+++.|++|+.++||||+++++|+|+|++++||+||+|.+..+|+||+||+||.| ..|.+++|
T Consensus 269 v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g---~~G~ai~l 345 (460)
T PRK11776 269 ALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAG---SKGLALSL 345 (460)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCC---CcceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 78999999
Q ss_pred cCchhHHHHHHHHHHhcCcccccccc
Q 024287 241 ITSEELFVLQRYENELKFKSEELTLQ 266 (269)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (269)
+++.|...+..+++.++..+++.+++
T Consensus 346 ~~~~e~~~~~~i~~~~~~~~~~~~l~ 371 (460)
T PRK11776 346 VAPEEMQRANAIEDYLGRKLNWEPLP 371 (460)
T ss_pred EchhHHHHHHHHHHHhCCCCceecCC
Confidence 99999999999999998887766554
No 8
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=9.6e-43 Score=293.21 Aligned_cols=234 Identities=27% Similarity=0.428 Sum_probs=213.7
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCC-----------C------------ccEEEE
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCN-----------N------------RQTVFA 57 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~-----------~------------~q~i~~ 57 (269)
||||.+.|.++-+-++++-++|+||||+|++.|+. +.+..++.+++... . .|+++|
T Consensus 380 PgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE-~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mf 458 (673)
T KOG0333|consen 380 PGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFE-PDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMF 458 (673)
T ss_pred chHHHHHHHHHHHHhccCceEeccchhhhhccccc-HHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEE
Confidence 99999999999999999999999999999999944 99999999887211 1 899999
Q ss_pred eccCCchhhHHHHHHhhhcccCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhh
Q 024287 58 SASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKK 137 (269)
Q Consensus 58 SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~ 137 (269)
|||+|+.++.|+..+. .+++.+.+.........+.|.+..++.++|...|..+|.+.-..++|||+|+++.
T Consensus 459 tatm~p~verlar~yl-----r~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~---- 529 (673)
T KOG0333|consen 459 TATMPPAVERLARSYL-----RRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKG---- 529 (673)
T ss_pred ecCCChHHHHHHHHHh-----hCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhh----
Confidence 9999999998887655 5778888888888888899999999999999999999998877899999999997
Q ss_pred cCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccc
Q 024287 138 AGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAID 217 (269)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~ 217 (269)
+..+++.|.+. ++.+..+||+-++++|+..++.|++|...||||||++++|||+|+|.+|||||++.+.++
T Consensus 530 ------~d~lAk~LeK~---g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieD 600 (673)
T KOG0333|consen 530 ------ADALAKILEKA---GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIED 600 (673)
T ss_pred ------HHHHHHHHhhc---cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHH
Confidence 45588888888 799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCeEEEEecCchhHHHHHHHHHHh
Q 024287 218 YLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYENEL 256 (269)
Q Consensus 218 ~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 256 (269)
|.||+||+||.| +.|.+++|+++.|...+..+.+.+
T Consensus 601 YtHRIGRTgRAG---k~GtaiSflt~~dt~v~ydLkq~l 636 (673)
T KOG0333|consen 601 YTHRIGRTGRAG---KSGTAISFLTPADTAVFYDLKQAL 636 (673)
T ss_pred HHHHhccccccc---cCceeEEEeccchhHHHHHHHHHH
Confidence 999999999999 889999999999977777776666
No 9
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.1e-42 Score=290.95 Aligned_cols=230 Identities=23% Similarity=0.379 Sum_probs=203.8
Q ss_pred CchhhHHHHh-CceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEK-HIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~-~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
||||+|++++ +.+-.++++++|+||||++++.| +...++.|+..++ ..+|.++||||.|+.++.+...... +
T Consensus 213 PGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~G-F~~di~~Ii~~lp--k~rqt~LFSAT~~~kV~~l~~~~L~----~ 285 (543)
T KOG0342|consen 213 PGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIG-FEEDVEQIIKILP--KQRQTLLFSATQPSKVKDLARGALK----R 285 (543)
T ss_pred CchHHhHhhcCCcchhhccceeEeecchhhhhcc-cHHHHHHHHHhcc--ccceeeEeeCCCcHHHHHHHHHhhc----C
Confidence 9999999999 44677888999999999999999 5599999999987 8999999999999999988754432 4
Q ss_pred ceeEEeecCc--ccCCCcceeEEEEecCcchHHHHHHHHhhcCC-CceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC
Q 024287 80 DVVHVHVNAI--KPLPSCLHHRFVICGKKMKYQTLLSLIQSDAP-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK 156 (269)
Q Consensus 80 ~~~~~~~~~~--~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~-~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (269)
++..+..... ..+...+.|-|+.++...++..+..+|++... .+++|||+|-.. +..+++.|...
T Consensus 286 d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~----------vk~~~~lL~~~-- 353 (543)
T KOG0342|consen 286 DPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMS----------VKFHAELLNYI-- 353 (543)
T ss_pred CceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhH----------HHHHHHHHhhc--
Confidence 5666665543 46778899999999999999999999998765 899999999553 55567777644
Q ss_pred CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeE
Q 024287 157 GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236 (269)
Q Consensus 157 ~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~ 236 (269)
.++|..+||++++..|..+..+|+..+..||||||+.+||+|+|+|++|++||.|.++++|+||+||+||.| ..|.
T Consensus 354 -dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~g---k~G~ 429 (543)
T KOG0342|consen 354 -DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREG---KEGK 429 (543)
T ss_pred -CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccC---CCce
Confidence 689999999999999999999999999999999999999999999999999999999999999999999977 8999
Q ss_pred EEEecCchhHHHHHHHH
Q 024287 237 VTSIITSEELFVLQRYE 253 (269)
Q Consensus 237 ~~~~~~~~~~~~~~~~~ 253 (269)
++.++.|++..++..++
T Consensus 430 alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 430 ALLLLAPWELGFLRYLK 446 (543)
T ss_pred EEEEeChhHHHHHHHHh
Confidence 99999999999998888
No 10
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.8e-42 Score=309.10 Aligned_cols=242 Identities=24% Similarity=0.369 Sum_probs=207.9
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||||.+++.++..+++++++||+||||++++++ +...+.+++..++ ...|++++|||+|..+..+...+. ...
T Consensus 261 PgrL~d~l~~~~~~l~~v~~lViDEAd~mld~g-f~~~i~~il~~~~--~~~q~l~~SAT~p~~v~~l~~~l~----~~~ 333 (545)
T PTZ00110 261 PGRLIDFLESNVTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVSQIR--PDRQTLMWSATWPKEVQSLARDLC----KEE 333 (545)
T ss_pred HHHHHHHHHcCCCChhhCcEEEeehHHhhhhcc-hHHHHHHHHHhCC--CCCeEEEEEeCCCHHHHHHHHHHh----ccC
Confidence 899999999999999999999999999999988 5588899998875 789999999999998776654332 234
Q ss_pred eeEEeecCcc-cCCCcceeEEEEecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC
Q 024287 81 VVHVHVNAIK-PLPSCLHHRFVICGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG 157 (269)
Q Consensus 81 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (269)
+..+.+.... ....++.+.+..+....|...+.+++... ...++||||++++.|+. +.+.|...
T Consensus 334 ~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~----------l~~~L~~~--- 400 (545)
T PTZ00110 334 PVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADF----------LTKELRLD--- 400 (545)
T ss_pred CEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHH----------HHHHHHHc---
Confidence 4555554333 34566788888888888888888888765 46799999999997544 67777654
Q ss_pred CCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEE
Q 024287 158 SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237 (269)
Q Consensus 158 ~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~ 237 (269)
++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+.++|+||+||+||.| ..|.+
T Consensus 401 g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G---~~G~a 477 (545)
T PTZ00110 401 GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAG---AKGAS 477 (545)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCC---CCceE
Confidence 678999999999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred EEecCchhHHHHHHHHHHhcCccccccc
Q 024287 238 TSIITSEELFVLQRYENELKFKSEELTL 265 (269)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
++|+++.+...+..+.+.+....+++|.
T Consensus 478 i~~~~~~~~~~~~~l~~~l~~~~q~vp~ 505 (545)
T PTZ00110 478 YTFLTPDKYRLARDLVKVLREAKQPVPP 505 (545)
T ss_pred EEEECcchHHHHHHHHHHHHHccCCCCH
Confidence 9999999999999999988777777663
No 11
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6e-42 Score=309.85 Aligned_cols=243 Identities=22% Similarity=0.370 Sum_probs=213.8
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||||++++.++.++++++++||+||||.|++.+ +...+..++..++ ...|+++||||+|+.+..+...+. .+
T Consensus 133 Pgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~g-f~~di~~Il~~lp--~~~q~llfSAT~p~~i~~i~~~~l-----~~ 204 (629)
T PRK11634 133 PGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMG-FIEDVETIMAQIP--EGHQTALFSATMPEAIRRITRRFM-----KE 204 (629)
T ss_pred HHHHHHHHHcCCcchhhceEEEeccHHHHhhcc-cHHHHHHHHHhCC--CCCeEEEEEccCChhHHHHHHHHc-----CC
Confidence 899999999999999999999999999999988 5588899998886 789999999999998876654333 24
Q ss_pred eeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCc
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSD 160 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (269)
+..+.+.........+.+.++.+....|...+..++......++||||+|+..+ ..+++.|.+. ++.
T Consensus 205 ~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a----------~~l~~~L~~~---g~~ 271 (629)
T PRK11634 205 PQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNAT----------LEVAEALERN---GYN 271 (629)
T ss_pred CeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHH----------HHHHHHHHhC---CCC
Confidence 455555555555667888888888888999999999887778999999999874 4477777766 688
Q ss_pred eEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEe
Q 024287 161 VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240 (269)
Q Consensus 161 v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~ 240 (269)
+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++|||||+|.+.++|+||+||+||.| +.|.+++|
T Consensus 272 ~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaG---r~G~ai~~ 348 (629)
T PRK11634 272 SAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAG---RAGRALLF 348 (629)
T ss_pred EEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCC---CcceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 78999999
Q ss_pred cCchhHHHHHHHHHHhcCccccccccc
Q 024287 241 ITSEELFVLQRYENELKFKSEELTLQT 267 (269)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (269)
+++.+...+..+++.++..++++++++
T Consensus 349 v~~~e~~~l~~ie~~~~~~i~~~~~p~ 375 (629)
T PRK11634 349 VENRERRLLRNIERTMKLTIPEVELPN 375 (629)
T ss_pred echHHHHHHHHHHHHhCCCcceecCCc
Confidence 999999999999999999988876653
No 12
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=9.2e-42 Score=301.16 Aligned_cols=239 Identities=25% Similarity=0.399 Sum_probs=206.0
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||||++++.++.+.++++++|||||||++++++ +...+..++..++ ...|++++|||+++.+..+...+. .+
T Consensus 133 P~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~-~~~~i~~il~~l~--~~~q~l~~SAT~~~~~~~l~~~~~-----~~ 204 (456)
T PRK10590 133 PGRLLDLEHQNAVKLDQVEILVLDEADRMLDMG-FIHDIRRVLAKLP--AKRQNLLFSATFSDDIKALAEKLL-----HN 204 (456)
T ss_pred hHHHHHHHHcCCcccccceEEEeecHHHHhccc-cHHHHHHHHHhCC--ccCeEEEEeCCCcHHHHHHHHHHc-----CC
Confidence 899999999999999999999999999999988 4578888888875 778999999999988766554332 23
Q ss_pred eeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCc
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSD 160 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (269)
+..+.+.........+.+.+..++...+...+..++......++||||+++..++. +++.|.+. ++.
T Consensus 205 ~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~----------l~~~L~~~---g~~ 271 (456)
T PRK10590 205 PLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANH----------LAEQLNKD---GIR 271 (456)
T ss_pred CeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHH----------HHHHHHHC---CCC
Confidence 44445544444556678888888777788888888887777899999999987544 67777665 688
Q ss_pred eEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEe
Q 024287 161 VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240 (269)
Q Consensus 161 v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~ 240 (269)
+..+||+|++.+|.++++.|++|+.+|||||+++++|+|+|++++||+|++|.++++|+||+||+||.| ..|.+++|
T Consensus 272 ~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g---~~G~ai~l 348 (456)
T PRK10590 272 SAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAA---ATGEALSL 348 (456)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCC---CCeeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 78999999
Q ss_pred cCchhHHHHHHHHHHhcCccccc
Q 024287 241 ITSEELFVLQRYENELKFKSEEL 263 (269)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~ 263 (269)
+...|...+..+++.++.+++..
T Consensus 349 ~~~~d~~~~~~ie~~l~~~~~~~ 371 (456)
T PRK10590 349 VCVDEHKLLRDIEKLLKKEIPRI 371 (456)
T ss_pred ecHHHHHHHHHHHHHhcCCCccc
Confidence 99999999999999998877543
No 13
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.7e-41 Score=303.13 Aligned_cols=241 Identities=21% Similarity=0.347 Sum_probs=204.9
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||||.+++.++.+.++++++||+||||+|++++ +...+.+++..+ .+.|++++|||+++.++.+...+. .+
T Consensus 254 PgrL~~~l~~~~~~l~~v~~lViDEad~ml~~g-f~~~i~~i~~~l---~~~q~l~~SATl~~~v~~l~~~~~-----~~ 324 (518)
T PLN00206 254 PGRLIDLLSKHDIELDNVSVLVLDEVDCMLERG-FRDQVMQIFQAL---SQPQVLLFSATVSPEVEKFASSLA-----KD 324 (518)
T ss_pred HHHHHHHHHcCCccchheeEEEeecHHHHhhcc-hHHHHHHHHHhC---CCCcEEEEEeeCCHHHHHHHHHhC-----CC
Confidence 899999999999999999999999999999998 457888888776 468999999999998877665443 35
Q ss_pred eeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcC--CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCC
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA--PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGS 158 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~--~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (269)
+..+...........+.+.+..+....+...+.+++.... .+++||||+++..|+. +.+.|... .+
T Consensus 325 ~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~----------l~~~L~~~--~g 392 (518)
T PLN00206 325 IILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADL----------LANAITVV--TG 392 (518)
T ss_pred CEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHH----------HHHHHhhc--cC
Confidence 5566666555556667888888887788888888887543 4689999999987544 56666542 25
Q ss_pred CceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEE
Q 024287 159 SDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238 (269)
Q Consensus 159 ~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~ 238 (269)
+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.| ..|.++
T Consensus 393 ~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g---~~G~ai 469 (518)
T PLN00206 393 LKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMG---EKGTAI 469 (518)
T ss_pred cceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCC---CCeEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred EecCchhHHHHHHHHHHhcCccccccc
Q 024287 239 SIITSEELFVLQRYENELKFKSEELTL 265 (269)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
+|+++.+...+..+.+.+....+++|.
T Consensus 470 ~f~~~~~~~~~~~l~~~l~~~~~~vp~ 496 (518)
T PLN00206 470 VFVNEEDRNLFPELVALLKSSGAAIPR 496 (518)
T ss_pred EEEchhHHHHHHHHHHHHHHcCCCCCH
Confidence 999999998888888888766666554
No 14
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.6e-41 Score=302.99 Aligned_cols=243 Identities=24% Similarity=0.332 Sum_probs=205.9
Q ss_pred CchhhHHHHhC-ceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEKH-IFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~~-~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
||||++++.++ .+.++++++|||||+|++++.+ +...+..++..++.....|+++||||+++.+..+...+. .
T Consensus 142 P~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~g-f~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l-----~ 215 (572)
T PRK04537 142 PGRLIDYVKQHKVVSLHACEICVLDEADRMFDLG-FIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHM-----N 215 (572)
T ss_pred HHHHHHHHHhccccchhheeeeEecCHHHHhhcc-hHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHh-----c
Confidence 89999999876 4789999999999999999988 558888898888644578999999999987665543322 2
Q ss_pred ceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS 159 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (269)
++..+.+.........+.+.++...+..|...+..++......++||||++++.|+. +++.|.+. ++
T Consensus 216 ~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~----------l~~~L~~~---g~ 282 (572)
T PRK04537 216 EPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVER----------VARTLERH---GY 282 (572)
T ss_pred CCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHH----------HHHHHHHc---CC
Confidence 223333333344556678888888888899999999988778899999999987554 77777765 67
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEE
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~ 239 (269)
.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++|||||+|.+.++|+||+||+||.| ..|.+++
T Consensus 283 ~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G---~~G~ai~ 359 (572)
T PRK04537 283 RVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLG---EEGDAIS 359 (572)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCC---CCceEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998 7899999
Q ss_pred ecCchhHHHHHHHHHHhcCccccccc
Q 024287 240 IITSEELFVLQRYENELKFKSEELTL 265 (269)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
|+++.+...+..+++.++.+++..|+
T Consensus 360 ~~~~~~~~~l~~i~~~~~~~~~~~~~ 385 (572)
T PRK04537 360 FACERYAMSLPDIEAYIEQKIPVEPV 385 (572)
T ss_pred EecHHHHHHHHHHHHHHcCCCCcccc
Confidence 99999999999999998887765544
No 15
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-41 Score=281.35 Aligned_cols=233 Identities=24% Similarity=0.373 Sum_probs=202.7
Q ss_pred CchhhHHHHhCceecC--cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhccc
Q 024287 1 MGSLCQLIEKHIFKLE--SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTK 78 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~--~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~ 78 (269)
||||++++++..-.++ +++++|+||||++++.|+. ..++.|+..+| ..+++-+||||..+.++.|.. .+.
T Consensus 139 PGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe-~~~n~ILs~LP--KQRRTGLFSATq~~~v~dL~r-----aGL 210 (567)
T KOG0345|consen 139 PGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFE-ASVNTILSFLP--KQRRTGLFSATQTQEVEDLAR-----AGL 210 (567)
T ss_pred chhHHHHHhchhhhccccccceEEecchHhHhcccHH-HHHHHHHHhcc--cccccccccchhhHHHHHHHH-----hhc
Confidence 9999999999665555 9999999999999999955 99999999997 889999999999999887754 344
Q ss_pred CceeEEeecCccc--CCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC
Q 024287 79 SDVVHVHVNAIKP--LPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK 156 (269)
Q Consensus 79 ~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (269)
+|++.+.+..... +|..+..+|..|....|...+.++|......+++||++|=.. +......+... -
T Consensus 211 RNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCas----------VeYf~~~~~~~-l 279 (567)
T KOG0345|consen 211 RNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCAS----------VEYFGKLFSRL-L 279 (567)
T ss_pred cCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcch----------HHHHHHHHHHH-h
Confidence 7888888876654 888899999999999999999999999888999999998442 33344444443 2
Q ss_pred CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeE
Q 024287 157 GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236 (269)
Q Consensus 157 ~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~ 236 (269)
...++..+||.|+...|..+++.|++....+|+|||+++||+|||++++||+||+|.+++.|+||+||+||.| +.|.
T Consensus 280 ~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~g---r~G~ 356 (567)
T KOG0345|consen 280 KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAG---REGN 356 (567)
T ss_pred CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhcc---Cccc
Confidence 3568999999999999999999999988899999999999999999999999999999999999999999999 8999
Q ss_pred EEEecCchhHHHHHHHHHH
Q 024287 237 VTSIITSEELFVLQRYENE 255 (269)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~ 255 (269)
++.|+.+.+..+..-+.-.
T Consensus 357 Aivfl~p~E~aYveFl~i~ 375 (567)
T KOG0345|consen 357 AIVFLNPREEAYVEFLRIK 375 (567)
T ss_pred eEEEecccHHHHHHHHHhc
Confidence 9999998777666555433
No 16
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1e-40 Score=296.28 Aligned_cols=243 Identities=24% Similarity=0.363 Sum_probs=207.8
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||||++++.++...++++++|||||+|.+++.+ +...+..++..++...+.|++++|||++.....+...+. .+
T Consensus 221 P~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~-~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~-----~~ 294 (475)
T PRK01297 221 PGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMG-FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWT-----TD 294 (475)
T ss_pred HHHHHHHHHcCCcccccCceEEechHHHHHhcc-cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhc-----cC
Confidence 899999999999999999999999999999888 557888888877645578999999999887665544332 23
Q ss_pred eeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCc
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSD 160 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (269)
+..+.+.........+.+.+..+...++...+..++......++||||++++.++. +.+.|.+. ++.
T Consensus 295 ~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~----------l~~~L~~~---~~~ 361 (475)
T PRK01297 295 PAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRR----------IEERLVKD---GIN 361 (475)
T ss_pred CEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHH----------HHHHHHHc---CCC
Confidence 44555555455555677777777788889999999988777899999999997554 66777655 678
Q ss_pred eEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEe
Q 024287 161 VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240 (269)
Q Consensus 161 v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~ 240 (269)
+..+||+++..+|.++++.|++|+.++||||+++++|+|+|++++||+|++|.+..+|+||+||+||.| ..|.+++|
T Consensus 362 ~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g---~~g~~i~~ 438 (475)
T PRK01297 362 AAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAG---ASGVSISF 438 (475)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCC---CCceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 78999999
Q ss_pred cCchhHHHHHHHHHHhcCcc-ccccc
Q 024287 241 ITSEELFVLQRYENELKFKS-EELTL 265 (269)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~-~~~~~ 265 (269)
++++|...+..+++.++.++ .++|.
T Consensus 439 ~~~~d~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T PRK01297 439 AGEDDAFQLPEIEELLGRKISCEMPP 464 (475)
T ss_pred ecHHHHHHHHHHHHHhCCCCcccCCc
Confidence 99999999999999999887 45554
No 17
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-41 Score=284.31 Aligned_cols=243 Identities=26% Similarity=0.424 Sum_probs=214.9
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccC-CchhhhHHHHHHhhhc--cCCCccEEEEeccCCchhhHHHHHHhhhcc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFN-SSKQVSSLKKLLASYS--SCNNRQTVFASASIPQHRRFLHNCIQQKWT 77 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~-~~~~~~~i~~i~~~~~--~~~~~q~i~~SATl~~~~~~l~~~~~~~~~ 77 (269)
||||.+++..|++.|++++++|+||||+|++ .+ +.+.|.+|+.... ...+.|.++||||.|..+..+...+.
T Consensus 210 pGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mg-F~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl---- 284 (482)
T KOG0335|consen 210 PGRLKDLIERGKISLDNCKFLVLDEADRMLDEMG-FEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFL---- 284 (482)
T ss_pred CchhhhhhhcceeehhhCcEEEecchHHhhhhcc-ccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHh----
Confidence 8999999999999999999999999999999 67 5599999998764 34689999999999999887654443
Q ss_pred cCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcC----CC-----ceEEEeeccchhhhhcCCCCchHHHH
Q 024287 78 KSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA----PE-----SGIIFVGEQSEKSKKAGNAPSTTLLV 148 (269)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~----~~-----~~lIF~~s~~~~~~~~~~~~~~~~~~ 148 (269)
..++..+.+........++.|.+..+.+.+|...|.+++.... .+ .++|||.+++. +..+.
T Consensus 285 ~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~----------~d~l~ 354 (482)
T KOG0335|consen 285 KDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRG----------ADELA 354 (482)
T ss_pred hccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccch----------hhHHH
Confidence 2448899999999999999999999999999999999997432 23 79999999997 45578
Q ss_pred HHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCC
Q 024287 149 DFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRK 228 (269)
Q Consensus 149 ~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~ 228 (269)
.+|... ++++..+||.-++.+|.+.++.|++|+..+||||++++||+|+|+|++||+||+|.+..+|+||+||+||.
T Consensus 355 ~~l~~~---~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~ 431 (482)
T KOG0335|consen 355 AFLSSN---GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRV 431 (482)
T ss_pred HHHhcC---CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccC
Confidence 888877 78899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHHHhcCcccccc
Q 024287 229 PFSDEKWTVTSIITSEELFVLQRYENELKFKSEELT 264 (269)
Q Consensus 229 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (269)
| ..|.++.|++..+....+.+.+.+.-.-+++|
T Consensus 432 G---n~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP 464 (482)
T KOG0335|consen 432 G---NGGRATSFFNEKNQNIAKALVEILTEANQEVP 464 (482)
T ss_pred C---CCceeEEEeccccchhHHHHHHHHHHhcccCc
Confidence 8 89999999998888888888877754444443
No 18
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1e-40 Score=282.61 Aligned_cols=246 Identities=25% Similarity=0.386 Sum_probs=209.8
Q ss_pred CchhhHHHHhCc-eecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEKHI-FKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~~~-~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
||||+.|+.... ++.++++++|+||||++++.| +...+..|++.++ ..+|+++||||-...+.+|..... ...
T Consensus 198 PGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMG-Fk~tL~~Ii~~lP--~~RQTLLFSATqt~svkdLaRLsL---~dP 271 (758)
T KOG0343|consen 198 PGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMG-FKKTLNAIIENLP--KKRQTLLFSATQTKSVKDLARLSL---KDP 271 (758)
T ss_pred hHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHh-HHHHHHHHHHhCC--hhheeeeeecccchhHHHHHHhhc---CCC
Confidence 999999999865 689999999999999999999 4499999999987 899999999999999888875432 223
Q ss_pred ceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS 159 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (269)
.++.+.......+|.++.|+|+.++-.+|++.|...++.+...+.|||++|-+++ ..+++.+.. +..++
T Consensus 272 ~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqv----------kf~~e~F~r-lrpg~ 340 (758)
T KOG0343|consen 272 VYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQV----------KFLYEAFCR-LRPGI 340 (758)
T ss_pred cEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHH----------HHHHHHHHh-cCCCC
Confidence 3334444555789999999999999999999999999999999999999997763 334554443 34578
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEE
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~ 239 (269)
++..+||.|++..|-+++..|......||+|||+++||+|+|.|++||++|+|.+..+|+||+||++|.+ ..|.+++
T Consensus 341 ~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~---~~G~sll 417 (758)
T KOG0343|consen 341 PLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYK---ERGESLL 417 (758)
T ss_pred ceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhccc---CCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 8899999
Q ss_pred ecCchh-HHHHHHHHHHhcCccccccccc
Q 024287 240 IITSEE-LFVLQRYENELKFKSEELTLQT 267 (269)
Q Consensus 240 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 267 (269)
+++|.+ ..++..+++.. +.++++.+++
T Consensus 418 ~L~psEeE~~l~~Lq~k~-I~i~~i~i~~ 445 (758)
T KOG0343|consen 418 MLTPSEEEAMLKKLQKKK-IPIKEIKIDP 445 (758)
T ss_pred EEcchhHHHHHHHHHHcC-CCHHhhccCH
Confidence 999988 55566666554 6666665543
No 19
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.2e-40 Score=288.69 Aligned_cols=237 Identities=27% Similarity=0.420 Sum_probs=201.9
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCch-hhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQH-RRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~-~~~l~~~~~~~~~~~ 79 (269)
||||++++.++.++++++++||+||||++++++ +...+..+....+ ...|+++||||++.. +..+...+ ..
T Consensus 131 p~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~-~~~~~~~i~~~~~--~~~q~~~~SAT~~~~~~~~~~~~~-----~~ 202 (434)
T PRK11192 131 PGRLLQYIKEENFDCRAVETLILDEADRMLDMG-FAQDIETIAAETR--WRKQTLLFSATLEGDAVQDFAERL-----LN 202 (434)
T ss_pred hHHHHHHHHcCCcCcccCCEEEEECHHHHhCCC-cHHHHHHHHHhCc--cccEEEEEEeecCHHHHHHHHHHH-----cc
Confidence 899999999999999999999999999999988 4478888887765 678999999999753 44333222 23
Q ss_pred ceeEEeecCcccCCCcceeEEEEecC-cchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCC
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFVICGK-KMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGS 158 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (269)
++..+...........+.+.+..++. ..+...+..+++.....++||||++++.++. +++.|.+. +
T Consensus 203 ~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~----------l~~~L~~~---~ 269 (434)
T PRK11192 203 DPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHE----------LAGWLRKA---G 269 (434)
T ss_pred CCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHH----------HHHHHHhC---C
Confidence 55566666666666778888877764 5688888888887677899999999997544 77777765 6
Q ss_pred CceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEE
Q 024287 159 SDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238 (269)
Q Consensus 159 ~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~ 238 (269)
+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.| ..|.++
T Consensus 270 ~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g---~~g~ai 346 (434)
T PRK11192 270 INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAG---RKGTAI 346 (434)
T ss_pred CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCC---CCceEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred EecCchhHHHHHHHHHHhcCccc
Q 024287 239 SIITSEELFVLQRYENELKFKSE 261 (269)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~ 261 (269)
++++..|...+..+++.+...+.
T Consensus 347 ~l~~~~d~~~~~~i~~~~~~~~~ 369 (434)
T PRK11192 347 SLVEAHDHLLLGKIERYIEEPLK 369 (434)
T ss_pred EEecHHHHHHHHHHHHHHhcccc
Confidence 99999999999999987765553
No 20
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-41 Score=274.62 Aligned_cols=240 Identities=26% Similarity=0.416 Sum_probs=207.2
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||||.++.-.+.++|+++-++|+||||+|++.|+. +.|.+|+-.++ +.+|+++.|||+|+.+..|...+.+ +
T Consensus 351 PgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFE-pqIrkilldiR--PDRqtvmTSATWP~~VrrLa~sY~K-----e 422 (629)
T KOG0336|consen 351 PGRLNDLQMDNVINLASITYLVLDEADRMLDMGFE-PQIRKILLDIR--PDRQTVMTSATWPEGVRRLAQSYLK-----E 422 (629)
T ss_pred CchHhhhhhcCeeeeeeeEEEEecchhhhhccccc-HHHHHHhhhcC--CcceeeeecccCchHHHHHHHHhhh-----C
Confidence 99999999999999999999999999999999955 99999998876 8999999999999999998876653 4
Q ss_pred eeEEeecCc-ccCCCcceeEEEEecCcchHHHHHHHHhhc-CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-C
Q 024287 81 VVHVHVNAI-KPLPSCLHHRFVICGKKMKYQTLLSLIQSD-APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-G 157 (269)
Q Consensus 81 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 157 (269)
+..+.+... ......+.|.++...+.+|++.+..+++.. ...++||||.++..|.. |...+. +
T Consensus 423 p~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~--------------LSSd~~l~ 488 (629)
T KOG0336|consen 423 PMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADH--------------LSSDFCLK 488 (629)
T ss_pred ceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhh--------------ccchhhhc
Confidence 455555443 345566888887777788998888888765 46899999999775433 322222 4
Q ss_pred CCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEE
Q 024287 158 SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237 (269)
Q Consensus 158 ~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~ 237 (269)
++.+..+||+-.+.+|+..+++|++|+++|||+||++.+|+|+|++++|+|||+|.+.+.|+||+||+||.| +.|.+
T Consensus 489 gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaG---r~G~s 565 (629)
T KOG0336|consen 489 GISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAG---RTGTS 565 (629)
T ss_pred ccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCC---CCcce
Confidence 788889999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred EEecCchhHHHHHHHHHHhcCccccccc
Q 024287 238 TSIITSEELFVLQRYENELKFKSEELTL 265 (269)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
++|++..|-....++-+.|+..=+++|-
T Consensus 566 is~lt~~D~~~a~eLI~ILe~aeQevPd 593 (629)
T KOG0336|consen 566 ISFLTRNDWSMAEELIQILERAEQEVPD 593 (629)
T ss_pred EEEEehhhHHHHHHHHHHHHHhhhhCcH
Confidence 9999999999999888888776666664
No 21
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-40 Score=270.22 Aligned_cols=240 Identities=23% Similarity=0.367 Sum_probs=223.5
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
|||+.+++..+.+..+.++++|+||+|.++..| +...+..++++++ .+.|++++|||+|.++..+...++ .+
T Consensus 153 pgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~g-fkdqI~~if~~lp--~~vQv~l~SAT~p~~vl~vt~~f~-----~~ 224 (397)
T KOG0327|consen 153 PGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRG-FKDQIYDIFQELP--SDVQVVLLSATMPSDVLEVTKKFM-----RE 224 (397)
T ss_pred chhHHHhhccccccccceeEEeecchHhhhccc-hHHHHHHHHHHcC--cchhheeecccCcHHHHHHHHHhc-----cC
Confidence 899999999999999999999999999999999 5699999999997 788999999999999888776554 67
Q ss_pred eeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCc
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSD 160 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (269)
++.+.+.....+...++|+|..+..+.|+..+.++.+ .-.+.+||||+++. +..+...|... +++
T Consensus 225 pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~----------v~~l~~~L~~~---~~~ 289 (397)
T KOG0327|consen 225 PVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRK----------VDNLTDKLRAH---GFT 289 (397)
T ss_pred ceEEEecchhhhhhheeeeeeeccccccccHHHHHHH--hhhcceEEecchhh----------HHHHHHHHhhC---Cce
Confidence 7888888888889999999999999999999999998 55899999999986 55577888555 789
Q ss_pred eEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEe
Q 024287 161 VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240 (269)
Q Consensus 161 v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~ 240 (269)
+.++||.|.+.+|..+++.|+.|..++||+|+.+++|+|+.++..|++|++|...++|+||+||+||.| .+|.++.+
T Consensus 290 ~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~g---rkg~~in~ 366 (397)
T KOG0327|consen 290 VSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFG---RKGVAINF 366 (397)
T ss_pred EEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccC---CCceeeee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCchhHHHHHHHHHHhcCcccccccc
Q 024287 241 ITSEELFVLQRYENELKFKSEELTLQ 266 (269)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (269)
+++.|...++++++++...++++|.+
T Consensus 367 v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 367 VTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred ehHhhHHHHHhHHHhcCCcceecccc
Confidence 99999999999999999999999975
No 22
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.6e-39 Score=283.69 Aligned_cols=243 Identities=22% Similarity=0.382 Sum_probs=204.1
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||+|.+++.++...+++++++||||+|++++.+ ....+.+++..++ .+.|++++|||+|+....+...+. .+
T Consensus 154 p~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~-~~~~~~~i~~~~~--~~~~~i~~SAT~~~~~~~~~~~~~-----~~ 225 (401)
T PTZ00424 154 PGRVYDMIDKRHLRVDDLKLFILDEADEMLSRG-FKGQIYDVFKKLP--PDVQVALFSATMPNEILELTTKFM-----RD 225 (401)
T ss_pred cHHHHHHHHhCCcccccccEEEEecHHHHHhcc-hHHHHHHHHhhCC--CCcEEEEEEecCCHHHHHHHHHHc-----CC
Confidence 799999999999999999999999999998877 4467777777764 789999999999987665443322 22
Q ss_pred eeEEeecCcccCCCcceeEEEEecC-cchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGK-KMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS 159 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (269)
+..+.+........++.+.+..++. ..+...+..++......+++|||++++.++. +.+.+.+. +.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~----------l~~~l~~~---~~ 292 (401)
T PTZ00424 226 PKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDY----------LTKKMHER---DF 292 (401)
T ss_pred CEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHH----------HHHHHHHC---CC
Confidence 3333344444445667777776654 4577778888777667899999999987554 66777665 67
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEE
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~ 239 (269)
.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.| ..|.++.
T Consensus 293 ~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g---~~G~~i~ 369 (401)
T PTZ00424 293 TVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFG---RKGVAIN 369 (401)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCC---CCceEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998 7899999
Q ss_pred ecCchhHHHHHHHHHHhcCccccccccc
Q 024287 240 IITSEELFVLQRYENELKFKSEELTLQT 267 (269)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (269)
++++.+...+..+++.+..++++++++.
T Consensus 370 l~~~~~~~~~~~~e~~~~~~~~~~~~~~ 397 (401)
T PTZ00424 370 FVTPDDIEQLKEIERHYNTQIEEMPMEV 397 (401)
T ss_pred EEcHHHHHHHHHHHHHHCCcccccCcch
Confidence 9999999999999999999999988753
No 23
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-40 Score=267.19 Aligned_cols=245 Identities=28% Similarity=0.385 Sum_probs=213.0
Q ss_pred CchhhHHHHhC----ceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhc
Q 024287 1 MGSLCQLIEKH----IFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKW 76 (269)
Q Consensus 1 pgrl~~~l~~~----~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~ 76 (269)
||||.+++.+. .+-+++++++|+||||.+++..+. ..++.+.+.++ .++|.++||||+.+.+..+......
T Consensus 133 PGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~-d~L~~i~e~lP--~~RQtLlfSATitd~i~ql~~~~i~-- 207 (442)
T KOG0340|consen 133 PGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFP-DILEGIEECLP--KPRQTLLFSATITDTIKQLFGCPIT-- 207 (442)
T ss_pred ccccccccccCCccchhhhhceeeEEecchhhhhccchh-hHHhhhhccCC--CccceEEEEeehhhHHHHhhcCCcc--
Confidence 89999999987 578999999999999999988744 88888888876 6799999999999988766543221
Q ss_pred ccCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcC---CCceEEEeeccchhhhhcCCCCchHHHHHHHhh
Q 024287 77 TKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA---PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSN 153 (269)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~---~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~ 153 (269)
..........+....+..+.+.|+.++...|-..+..+|+..+ .+.++||+|+-.+| +.+...|.+
T Consensus 208 -k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~c----------Q~l~~~l~~ 276 (442)
T KOG0340|consen 208 -KSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTREC----------QLLSMTLKN 276 (442)
T ss_pred -cccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHH----------HHHHHHHhh
Confidence 1123455555667788889999999999999999999997543 46799999998764 446777776
Q ss_pred hcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCC
Q 024287 154 SYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDE 233 (269)
Q Consensus 154 ~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~ 233 (269)
. +..+..+||.|++++|...+.+|+++..+||||||+++||+|||.|++|||||+|.++.+|+||+||++|.| +
T Consensus 277 l---e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAG---R 350 (442)
T KOG0340|consen 277 L---EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAG---R 350 (442)
T ss_pred h---ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhccc---C
Confidence 6 788999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CeEEEEecCchhHHHHHHHHHHhcCccccccccc
Q 024287 234 KWTVTSIITSEELFVLQRYENELKFKSEELTLQT 267 (269)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (269)
.|.+++++++.|.+.+..+++..|..+.+.+..+
T Consensus 351 ~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~ 384 (442)
T KOG0340|consen 351 KGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQ 384 (442)
T ss_pred CcceEEEechhhHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999887653
No 24
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-39 Score=264.51 Aligned_cols=243 Identities=24% Similarity=0.395 Sum_probs=212.1
Q ss_pred CchhhHHHHh-CceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEK-HIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~-~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
||-++|+... +.++++.++++|+||||.|++...+...-..|...++ .+.|+++||||+...+...+..+. +
T Consensus 215 PGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP--~~~QllLFSATf~e~V~~Fa~kiv-----p 287 (477)
T KOG0332|consen 215 PGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP--RNQQLLLFSATFVEKVAAFALKIV-----P 287 (477)
T ss_pred CccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcC--CcceEEeeechhHHHHHHHHHHhc-----C
Confidence 8899999998 9999999999999999999877545566777777775 799999999999887665543322 5
Q ss_pred ceeEEeecCcccCCCcceeEEEEecC-cchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCC
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFVICGK-KMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGS 158 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (269)
+...+.+........++.|+|+.|.. .+|+.++.++.....-++.||||.++..| ..+++.+.+. |
T Consensus 288 n~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta----------~~l~~~m~~~---G 354 (477)
T KOG0332|consen 288 NANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATA----------MWLYEEMRAE---G 354 (477)
T ss_pred CCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhH----------HHHHHHHHhc---C
Confidence 66677778788888999999999976 47999999987776779999999999964 4588888877 7
Q ss_pred CceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCC------CccccccccccCCCCCCCC
Q 024287 159 SDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPR------SAIDYLHRAGRTGRKPFSD 232 (269)
Q Consensus 159 ~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~------~~~~~~qr~GR~gR~~~~~ 232 (269)
..|..+||+|.-.+|..+++.|+.|..++||+|++++||+|++.|++|||||+|. +.+.|+||+||+||.|
T Consensus 355 h~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFG--- 431 (477)
T KOG0332|consen 355 HQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFG--- 431 (477)
T ss_pred ceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccc---
Confidence 8899999999999999999999999999999999999999999999999999995 7899999999999999
Q ss_pred CCeEEEEecC-chhHHHHHHHHHHhcCcccccccc
Q 024287 233 EKWTVTSIIT-SEELFVLQRYENELKFKSEELTLQ 266 (269)
Q Consensus 233 ~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 266 (269)
+.|.++.+++ .++...+..++++++..++++..+
T Consensus 432 kkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~ 466 (477)
T KOG0332|consen 432 KKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPD 466 (477)
T ss_pred ccceEEEeecccCcHHHHHHHHHHHhhcceecCCc
Confidence 8999999997 578899999999999888876553
No 25
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.2e-40 Score=274.48 Aligned_cols=231 Identities=23% Similarity=0.373 Sum_probs=205.3
Q ss_pred CchhhHHHHhC-ceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEKH-IFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~~-~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
||||.||+++- .++++++.++|+||||+|++.+ +...+.+|++..+ .++|+++||||+...+..|.+.-. .
T Consensus 310 PGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeeg-FademnEii~lcp--k~RQTmLFSATMteeVkdL~slSL-----~ 381 (691)
T KOG0338|consen 310 PGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEG-FADEMNEIIRLCP--KNRQTMLFSATMTEEVKDLASLSL-----N 381 (691)
T ss_pred chhHHHHhccCCCccccceeEEEechHHHHHHHH-HHHHHHHHHHhcc--ccccceeehhhhHHHHHHHHHhhc-----C
Confidence 99999999985 5899999999999999999999 5599999999876 899999999999999998875433 5
Q ss_pred ceeEEeecCcccCCCcceeEEEEecC---cchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFVICGK---KMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK 156 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~---~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (269)
.++.+.+++.......++|.|+..-. .++...+..++...-...++||+.|++.|+++ ..+...|
T Consensus 382 kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl-------~IllGLl----- 449 (691)
T KOG0338|consen 382 KPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRL-------RILLGLL----- 449 (691)
T ss_pred CCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHH-------HHHHHHh-----
Confidence 78999999998888889999887642 35777788888777778999999999998884 3333333
Q ss_pred CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeE
Q 024287 157 GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWT 236 (269)
Q Consensus 157 ~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~ 236 (269)
++.++-+||++++.+|...++.|+.+++.+|||||+++||+||+.+..||||++|.+...|+||+||++|.| +.|.
T Consensus 450 -gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAG---RaGr 525 (691)
T KOG0338|consen 450 -GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAG---RAGR 525 (691)
T ss_pred -hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcc---cCcc
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred EEEecCchhHHHHHHHHHH
Q 024287 237 VTSIITSEELFVLQRYENE 255 (269)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~ 255 (269)
+++|+.+.|...++.+-+-
T Consensus 526 sVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 526 SVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eEEEeccccHHHHHHHHhh
Confidence 9999999999998877665
No 26
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.6e-39 Score=264.03 Aligned_cols=231 Identities=23% Similarity=0.406 Sum_probs=201.8
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||||+|+|.++.+.|.-++++.+||||+|++.|+. ..+..++...+ ..+|+++||||+|..+..++.+.. ..
T Consensus 310 PGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFE-ddir~iF~~FK--~QRQTLLFSATMP~KIQ~FAkSAL-----VK 381 (610)
T KOG0341|consen 310 PGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFE-DDIRTIFSFFK--GQRQTLLFSATMPKKIQNFAKSAL-----VK 381 (610)
T ss_pred cchHHHHHHHhhccHHHHHHhhhhhHHHHhhccch-hhHHHHHHHHh--hhhheeeeeccccHHHHHHHHhhc-----cc
Confidence 99999999999999999999999999999999954 99999999876 789999999999999886654432 46
Q ss_pred eeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCc
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSD 160 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (269)
++++.+.......-++.|.+-.+..+.|...+++-|++.. .+++|||..+.. +..+.++|.-. +..
T Consensus 382 PvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~-PpVLIFaEkK~D----------VD~IhEYLLlK---GVE 447 (610)
T KOG0341|consen 382 PVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTS-PPVLIFAEKKAD----------VDDIHEYLLLK---GVE 447 (610)
T ss_pred ceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccCC-CceEEEeccccC----------hHHHHHHHHHc---cce
Confidence 7888888887777777777777778889999988888765 799999998764 67788887655 788
Q ss_pred eEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEe
Q 024287 161 VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240 (269)
Q Consensus 161 v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~ 240 (269)
+..+||+-.+++|...++.|+.|+..+||+||+++.|+|+|++.+|||||+|...+.|+||+||+||.| .+|.+.+|
T Consensus 448 avaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg---~~GiATTf 524 (610)
T KOG0341|consen 448 AVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSG---KTGIATTF 524 (610)
T ss_pred eEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCC---Ccceeeee
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred cCch-hHHHHHHHHHHh
Q 024287 241 ITSE-ELFVLQRYENEL 256 (269)
Q Consensus 241 ~~~~-~~~~~~~~~~~~ 256 (269)
+.+. +...+-.++..+
T Consensus 525 INK~~~esvLlDLK~LL 541 (610)
T KOG0341|consen 525 INKNQEESVLLDLKHLL 541 (610)
T ss_pred ecccchHHHHHHHHHHH
Confidence 9863 444554555444
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.4e-37 Score=256.61 Aligned_cols=241 Identities=24% Similarity=0.329 Sum_probs=212.1
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||||+++++-+..+++++.+||+||+|+|++.| +...+.+|..+++ +++|.++||||++..++.|+..+. .+
T Consensus 354 PgRlid~VkmKatn~~rvS~LV~DEadrmfdmG-fe~qVrSI~~hir--pdrQtllFsaTf~~kIe~lard~L-----~d 425 (731)
T KOG0339|consen 354 PGRLIDMVKMKATNLSRVSYLVLDEADRMFDMG-FEPQVRSIKQHIR--PDRQTLLFSATFKKKIEKLARDIL-----SD 425 (731)
T ss_pred hHHHHHHHHhhcccceeeeEEEEechhhhhccc-cHHHHHHHHhhcC--CcceEEEeeccchHHHHHHHHHHh-----cC
Confidence 899999999999999999999999999999999 5599999999987 899999999999999998875443 45
Q ss_pred eeEEeecCcccCCCcceeEEEEecC-cchHHHHHHHHhhc-CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCC
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGK-KMKYQTLLSLIQSD-APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGS 158 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~-~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (269)
++.+..........+|.|.+..++. ..|+.+|..-|... ..+++|||+.-+..+ +.+...|.-. +
T Consensus 426 pVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~----------e~i~a~Lklk---~ 492 (731)
T KOG0339|consen 426 PVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADA----------EEIAANLKLK---G 492 (731)
T ss_pred CeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCH----------HHHHHHhccc---c
Confidence 5555555677788899999988876 46888888777654 568999999877754 4466666655 7
Q ss_pred CceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEE
Q 024287 159 SDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238 (269)
Q Consensus 159 ~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~ 238 (269)
+++..+||+|.+.+|.+++.+|+.+...|||+||+.++|+|+|++..|||||+-.+.+.|.||+||+||.| ..|.+|
T Consensus 493 ~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag---~kGvay 569 (731)
T KOG0339|consen 493 FNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAG---EKGVAY 569 (731)
T ss_pred ceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccc---ccceee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998 889999
Q ss_pred EecCchhHHHHHHHHHHhcCccccccc
Q 024287 239 SIITSEELFVLQRYENELKFKSEELTL 265 (269)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
+++++.|......+.+-|+-..+.+|.
T Consensus 570 TlvTeKDa~fAG~LVnnLe~agQnVP~ 596 (731)
T KOG0339|consen 570 TLVTEKDAEFAGHLVNNLEGAGQNVPD 596 (731)
T ss_pred EEechhhHHHhhHHHHHHhhccccCCh
Confidence 999999999999999888766666654
No 28
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-37 Score=264.20 Aligned_cols=240 Identities=25% Similarity=0.343 Sum_probs=199.2
Q ss_pred CchhhHHHHhCce---ecCcccEEEEeccccccCCchhhhHHHHHHhhhc---cCCCccEEEEeccCCchhh--------
Q 024287 1 MGSLCQLIEKHIF---KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS---SCNNRQTVFASASIPQHRR-------- 66 (269)
Q Consensus 1 pgrl~~~l~~~~~---~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~---~~~~~q~i~~SATl~~~~~-------- 66 (269)
||||..++..+.. ++++++++|+||+|+|+..|++ ..+..+++.+. .....|++.||||+.-...
T Consensus 321 PGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF-~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k 399 (731)
T KOG0347|consen 321 PGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHF-EELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRK 399 (731)
T ss_pred chHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccH-HHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhh
Confidence 9999999999776 7889999999999999999955 78888887774 3467899999999754411
Q ss_pred ---------HHHHHHhhhcc-cCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhh
Q 024287 67 ---------FLHNCIQQKWT-KSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSK 136 (269)
Q Consensus 67 ---------~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~ 136 (269)
.-...++.... ..++.+++..+...+...+....+.|+..+|--.++-+|..+ +++++||||+++-
T Consensus 400 ~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~--- 475 (731)
T KOG0347|consen 400 KKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDC--- 475 (731)
T ss_pred ccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec-CCceEEEechHHH---
Confidence 01112223322 234577788777777777777777777777766666566554 5899999999984
Q ss_pred hcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCcc
Q 024287 137 KAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAI 216 (269)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~ 216 (269)
+..+..+|... +++...+|+.|.+.+|.+.+++|++....+|||||+++||+|||+|.+||||-+|.+.+
T Consensus 476 -------vKRLt~~L~~L---~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtse 545 (731)
T KOG0347|consen 476 -------VKRLTVLLNNL---DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSE 545 (731)
T ss_pred -------HHHHHHHHhhc---CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccc
Confidence 55688888877 68889999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCeEEEEecCchhHHHHHHHHHHhcC
Q 024287 217 DYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYENELKF 258 (269)
Q Consensus 217 ~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 258 (269)
-|+||.||++|.+ ..|..+.++.|.+...+.++++.|..
T Consensus 546 iYVHRSGRTARA~---~~Gvsvml~~P~e~~~~~KL~ktL~k 584 (731)
T KOG0347|consen 546 IYVHRSGRTARAN---SEGVSVMLCGPQEVGPLKKLCKTLKK 584 (731)
T ss_pred eeEeccccccccc---CCCeEEEEeChHHhHHHHHHHHHHhh
Confidence 9999999999998 89999999999999999999999854
No 29
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=7.8e-37 Score=263.14 Aligned_cols=221 Identities=25% Similarity=0.335 Sum_probs=197.4
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||||+.++..+.++.++++++|+||||.|++.+.+...+..|+..++ ..+|++.+|||.|..+..+...++ ++
T Consensus 151 PGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP--~~rQv~a~SATYp~nLdn~Lsk~m-----rd 223 (980)
T KOG4284|consen 151 PGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLP--QIRQVAAFSATYPRNLDNLLSKFM-----RD 223 (980)
T ss_pred chHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcc--hhheeeEEeccCchhHHHHHHHHh-----cc
Confidence 99999999999999999999999999999998878799999999997 899999999999998776655544 56
Q ss_pred eeEEeecCcccCCCcceeEEEEecCc--------chHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHh
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKK--------MKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS 152 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~--------~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~ 152 (269)
+..+.........-+|+|+++..+.. .|+..|..+++..+..+.||||++...|+. ++..|.
T Consensus 224 p~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~----------~a~~L~ 293 (980)
T KOG4284|consen 224 PALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEP----------IATHLK 293 (980)
T ss_pred cceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhH----------HHHHhh
Confidence 66777777777788899998876542 377888888888888999999999987555 777787
Q ss_pred hhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCC
Q 024287 153 NSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSD 232 (269)
Q Consensus 153 ~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~ 232 (269)
.. |+++.++.|.|++++|..+++.++.-..+|||+||..+||||-|++++|||.|.|.+.++|+||+|||||.|
T Consensus 294 ss---G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG--- 367 (980)
T KOG4284|consen 294 SS---GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFG--- 367 (980)
T ss_pred cc---CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhccccc---
Confidence 76 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCch
Q 024287 233 EKWTVTSIITSE 244 (269)
Q Consensus 233 ~~g~~~~~~~~~ 244 (269)
..|.+++|+...
T Consensus 368 ~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 368 AHGAAVTLLEDE 379 (980)
T ss_pred ccceeEEEeccc
Confidence 889988887643
No 30
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-36 Score=250.17 Aligned_cols=232 Identities=27% Similarity=0.374 Sum_probs=205.5
Q ss_pred CchhhHHHHhCc-eecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEKHI-FKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~~~-~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
||||++++..|. ..+..++++|+||||.++.+|+. ..+..+...++ ...|-++||||+..++..|...+. .
T Consensus 153 P~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYe-edlk~l~~~LP--r~~Q~~LmSATl~dDv~~LKkL~l-----~ 224 (569)
T KOG0346|consen 153 PAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYE-EDLKKLRSHLP--RIYQCFLMSATLSDDVQALKKLFL-----H 224 (569)
T ss_pred hHHHHHHHhhccchhhhheeeEEechhhhhhhcccH-HHHHHHHHhCC--chhhheeehhhhhhHHHHHHHHhc-----c
Confidence 899999999999 79999999999999999999944 89999999987 899999999999999998876554 5
Q ss_pred ceeEEeecCcc-cCCCcceeEEEEecCcchHHHHHHHHhh-cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC
Q 024287 80 DVVHVHVNAIK-PLPSCLHHRFVICGKKMKYQTLLSLIQS-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG 157 (269)
Q Consensus 80 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~-~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (269)
+++.+...+.. ..+..+.|+++.|..++|+..+..+++- ...+++|||+|+.+.+- .+.-+|...
T Consensus 225 nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~Y----------rLkLfLeqF--- 291 (569)
T KOG0346|consen 225 NPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCY----------RLKLFLEQF--- 291 (569)
T ss_pred CCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhH----------HHHHHHHHh---
Confidence 77777776554 4567899999999999999999999974 35799999999999744 466677766
Q ss_pred CCceEEecccCChhHHHHHHHHHhcCCccEEEEecc-----------------------------------ccccCCCCC
Q 024287 158 SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI-----------------------------------AARGIDLPE 202 (269)
Q Consensus 158 ~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----------------------------------~~~Gidi~~ 202 (269)
+++...++|.||.+-|..+++.|..|..+++|+||. .+||||+.+
T Consensus 292 GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~ 371 (569)
T KOG0346|consen 292 GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHH 371 (569)
T ss_pred CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchh
Confidence 788999999999999999999999999999999992 579999999
Q ss_pred CCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHHHHHh
Q 024287 203 TTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYENEL 256 (269)
Q Consensus 203 ~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 256 (269)
|..|+|||+|.++.+|+||+||++|.+ ..|.+++|+.|.+......+++.+
T Consensus 372 V~~VlNFD~P~t~~sYIHRvGRTaRg~---n~GtalSfv~P~e~~g~~~le~~~ 422 (569)
T KOG0346|consen 372 VSNVLNFDFPETVTSYIHRVGRTARGN---NKGTALSFVSPKEEFGKESLESIL 422 (569)
T ss_pred eeeeeecCCCCchHHHHHhccccccCC---CCCceEEEecchHHhhhhHHHHHH
Confidence 999999999999999999999999998 899999999998888666666655
No 31
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-36 Score=252.39 Aligned_cols=237 Identities=23% Similarity=0.328 Sum_probs=191.2
Q ss_pred CchhhHHHHh-CceecCcccEEEEeccccccCCchhhhHHHHHHhhhc-----------cCCCccEEEEeccCCchhhHH
Q 024287 1 MGSLCQLIEK-HIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS-----------SCNNRQTVFASASIPQHRRFL 68 (269)
Q Consensus 1 pgrl~~~l~~-~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~-----------~~~~~q~i~~SATl~~~~~~l 68 (269)
||||.|+|++ ..+.+++++.+|+||+|++++.|+. ..|..|++.+- .+...|.+++|||+...+.+|
T Consensus 270 PGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfe-kdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rL 348 (708)
T KOG0348|consen 270 PGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFE-KDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRL 348 (708)
T ss_pred chHHHHHHhccchheeeeeeEEEecchhHHHhccch-hhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHH
Confidence 9999999999 6789999999999999999999944 77777776651 112489999999999999988
Q ss_pred HHHHhhhcccCceeEEeec-----------------C--------cccCCCcceeEEEEecCcchHHHHHHHHhhc----
Q 024287 69 HNCIQQKWTKSDVVHVHVN-----------------A--------IKPLPSCLHHRFVICGKKMKYQTLLSLIQSD---- 119 (269)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~-----------------~--------~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~---- 119 (269)
.+... .+++.+..+ . ....|..+.|.|..++...++..|..+|.+.
T Consensus 349 a~~sL-----kDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~ 423 (708)
T KOG0348|consen 349 ADLSL-----KDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFE 423 (708)
T ss_pred hhccc-----cCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhh
Confidence 76443 233333311 1 1345777889999999999999888888643
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-------------------CCCceEEecccCChhHHHHHHHHH
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-------------------GSSDVLLLEEEMNFNSRAASLLEV 180 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~v~~~h~~~~~~~r~~~~~~f 180 (269)
...++|||+.+.+.++- .++.+.+..- ..+.+.-+||+|++++|..++..|
T Consensus 424 ~~qk~iVF~S~~d~VeF----------Hy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~F 493 (708)
T KOG0348|consen 424 EKQKMIVFFSCSDSVEF----------HYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEF 493 (708)
T ss_pred hhceeEEEEechhHHHH----------HHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhh
Confidence 45689999999885443 3333322111 123477899999999999999999
Q ss_pred hcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHHHHHh
Q 024287 181 RQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYENEL 256 (269)
Q Consensus 181 ~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 256 (269)
......||+|||+++||+|+|+|++||+||+|.++++|+||+||++|.| .+|.++.|+.|.+.+++..++...
T Consensus 494 s~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG---~kG~alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 494 SHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAG---EKGEALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred ccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhcc---CCCceEEEecccHHHHHHHHHhhc
Confidence 9998889999999999999999999999999999999999999999999 899999999999999877776654
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.3e-34 Score=253.15 Aligned_cols=217 Identities=16% Similarity=0.169 Sum_probs=159.0
Q ss_pred ecCcccEEEEeccccccCCch-hhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccC
Q 024287 14 KLESVQVLVIDEVDFLFNSSK-QVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPL 92 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~-~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (269)
...+++++||||||++++||. +++.+..+.......++.|++++|||+++..... +...+...++....... .
T Consensus 124 ~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~d---i~~~l~l~~~~~~~~s~---~ 197 (470)
T TIGR00614 124 ERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVRED---ILRQLNLKNPQIFCTSF---D 197 (470)
T ss_pred hcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHH---HHHHcCCCCCcEEeCCC---C
Confidence 578899999999999999873 3344443322111126789999999998864321 11222222222222211 1
Q ss_pred CCcceeEEEEecCcchHHHHHHHHh-hcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChh
Q 024287 93 PSCLHHRFVICGKKMKYQTLLSLIQ-SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFN 171 (269)
Q Consensus 93 ~~~i~~~~~~~~~~~k~~~l~~ll~-~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~ 171 (269)
..++...... ........+...+. ...+..+||||+|++.++. +++.|.+. ++.+..+||+|++.
T Consensus 198 r~nl~~~v~~-~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~----------la~~L~~~---g~~~~~~H~~l~~~ 263 (470)
T TIGR00614 198 RPNLYYEVRR-KTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQ----------VTASLQNL---GIAAGAYHAGLEIS 263 (470)
T ss_pred CCCcEEEEEe-CCccHHHHHHHHHHHhcCCCceEEEECcHHHHHH----------HHHHHHhc---CCCeeEeeCCCCHH
Confidence 1223222221 12245556666665 3445567999999997555 67777765 68899999999999
Q ss_pred HHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHH
Q 024287 172 SRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQR 251 (269)
Q Consensus 172 ~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~ 251 (269)
+|..+++.|++|+.+|||||+++++|+|+|++++|||+++|.+.++|+||+||+||.| ..|.+++++++.|...++.
T Consensus 264 eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G---~~~~~~~~~~~~d~~~~~~ 340 (470)
T TIGR00614 264 ARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDG---LPSECHLFYAPADINRLRR 340 (470)
T ss_pred HHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCC---CCceEEEEechhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 7899999999988876665
Q ss_pred HH
Q 024287 252 YE 253 (269)
Q Consensus 252 ~~ 253 (269)
+.
T Consensus 341 ~~ 342 (470)
T TIGR00614 341 LL 342 (470)
T ss_pred HH
Confidence 53
No 33
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6e-34 Score=258.62 Aligned_cols=228 Identities=15% Similarity=0.168 Sum_probs=164.9
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCch-hhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSK-QVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~-~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
|+||........+...+++++||||||++.+||. +++.+..+-......++.|++++|||+++....- +...+...
T Consensus 123 Pe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~d---i~~~l~l~ 199 (607)
T PRK11057 123 PERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQD---IVRLLGLN 199 (607)
T ss_pred hHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHH---HHHHhCCC
Confidence 4555422222234456789999999999999873 3344333321111125789999999998864321 11222222
Q ss_pred ceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS 159 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (269)
++... ..... ..++. +.......+...+...+....+.++||||+|++.|+. +++.|.+. ++
T Consensus 200 ~~~~~-~~~~~--r~nl~--~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~----------la~~L~~~---g~ 261 (607)
T PRK11057 200 DPLIQ-ISSFD--RPNIR--YTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVED----------TAARLQSR---GI 261 (607)
T ss_pred CeEEE-ECCCC--CCcce--eeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHH----------HHHHHHhC---CC
Confidence 22222 11111 12222 2223334456677777777777899999999997554 77788776 78
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEE
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~ 239 (269)
.+..+||+|++.+|.++++.|+.|+.+|||||+++++|+|+|++++|||||+|.+.++|+||+||+||.| ..|.+++
T Consensus 262 ~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G---~~~~~il 338 (607)
T PRK11057 262 SAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG---LPAEAML 338 (607)
T ss_pred CEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCC---CCceEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998 7789999
Q ss_pred ecCchhHHHHHHH
Q 024287 240 IITSEELFVLQRY 252 (269)
Q Consensus 240 ~~~~~~~~~~~~~ 252 (269)
|+++.|...+..+
T Consensus 339 l~~~~d~~~~~~~ 351 (607)
T PRK11057 339 FYDPADMAWLRRC 351 (607)
T ss_pred EeCHHHHHHHHHH
Confidence 9999887665443
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.7e-34 Score=263.85 Aligned_cols=227 Identities=15% Similarity=0.116 Sum_probs=163.8
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhc-----cCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecC
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS-----SCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNA 88 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~-----~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (269)
.+++++++|+||+|.+... +...+..++..++ .+.++|++++|||+++..+... .+...+...+ ..
T Consensus 154 ~l~~l~~vViDEah~~~g~--fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~-----~l~g~~~~~i--~~ 224 (742)
T TIGR03817 154 FLRRLRYVVIDECHSYRGV--FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAAS-----RLIGAPVVAV--TE 224 (742)
T ss_pred HHhcCCEEEEeChhhccCc--cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHH-----HHcCCCeEEE--CC
Confidence 4899999999999988642 2344444443331 2467899999999999865322 2233333222 22
Q ss_pred cccCCCcceeEEEEecC-----------------cchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHH
Q 024287 89 IKPLPSCLHHRFVICGK-----------------KMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFL 151 (269)
Q Consensus 89 ~~~~~~~i~~~~~~~~~-----------------~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l 151 (269)
... +....+..+..+. .++...+..+++. +.++||||+|++.|+.+ +..+
T Consensus 225 ~~~-~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l----------~~~l 291 (742)
T TIGR03817 225 DGS-PRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELV----------AAIA 291 (742)
T ss_pred CCC-CcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHH----------HHHH
Confidence 221 1112222221111 1344556666654 57999999999987774 3333
Q ss_pred hhhcC-----CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCC
Q 024287 152 SNSYK-----GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTG 226 (269)
Q Consensus 152 ~~~~~-----~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~g 226 (269)
.+.+. .+..+..+||++++++|.+++++|++|+.++||||+++++|||+|++++||+++.|.+.++|+||+||+|
T Consensus 292 ~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaG 371 (742)
T TIGR03817 292 RRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAG 371 (742)
T ss_pred HHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccC
Confidence 33211 1356889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEecC--chhHHHHHHHHHHhcCccccccc
Q 024287 227 RKPFSDEKWTVTSIIT--SEELFVLQRYENELKFKSEELTL 265 (269)
Q Consensus 227 R~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
|.| ..|.++++.. +.|...+...++.++..+++..+
T Consensus 372 R~G---~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~~~ 409 (742)
T TIGR03817 372 RRG---QGALVVLVARDDPLDTYLVHHPEALFDRPVEATVF 409 (742)
T ss_pred CCC---CCcEEEEEeCCChHHHHHHhCHHHHhcCCCcccee
Confidence 998 7889998886 56777788888888888877544
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.6e-33 Score=260.45 Aligned_cols=212 Identities=16% Similarity=0.186 Sum_probs=158.6
Q ss_pred CcccEEEEeccccccCCc-hhhhHHHHH--HhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccC
Q 024287 16 ESVQVLVIDEVDFLFNSS-KQVSSLKKL--LASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPL 92 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~-~~~~~i~~i--~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (269)
..+.+|||||||++++|| .+++.+..+ +... .+..|++++|||+++.+..- +...+...+...+... . .
T Consensus 580 ~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~--fp~vPilALTATAT~~V~eD---I~~~L~l~~~~vfr~S-f--~ 651 (1195)
T PLN03137 580 GLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQK--FPNIPVLALTATATASVKED---VVQALGLVNCVVFRQS-F--N 651 (1195)
T ss_pred cccceeccCcchhhhhcccchHHHHHHHHHHHHh--CCCCCeEEEEecCCHHHHHH---HHHHcCCCCcEEeecc-c--C
Confidence 458899999999999998 345555543 2222 25789999999998875531 1222322333322221 1 1
Q ss_pred CCcceeEEEEecCcc-hHHHHHHHHhhc-CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCCh
Q 024287 93 PSCLHHRFVICGKKM-KYQTLLSLIQSD-APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170 (269)
Q Consensus 93 ~~~i~~~~~~~~~~~-k~~~l~~ll~~~-~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~ 170 (269)
..++ +|...+... ....+..++... ...++||||+++++++. +++.|.+. ++.+..|||+|++
T Consensus 652 RpNL--~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~----------LAe~L~~~---Gika~~YHAGLs~ 716 (1195)
T PLN03137 652 RPNL--WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEK----------VAERLQEF---GHKAAFYHGSMDP 716 (1195)
T ss_pred ccce--EEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHH----------HHHHHHHC---CCCeeeeeCCCCH
Confidence 2233 222233332 245566666543 35689999999998555 77777766 7899999999999
Q ss_pred hHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHH
Q 024287 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQ 250 (269)
Q Consensus 171 ~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~ 250 (269)
.+|..++++|..|+.+|||||+++++|||+|+|++||||++|.+.++|+||+||+||.| ..|.|++|++..|...+.
T Consensus 717 eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG---~~g~cILlys~~D~~~~~ 793 (1195)
T PLN03137 717 AQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDG---QRSSCVLYYSYSDYIRVK 793 (1195)
T ss_pred HHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCC---CCceEEEEecHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 789999999988876655
Q ss_pred HHH
Q 024287 251 RYE 253 (269)
Q Consensus 251 ~~~ 253 (269)
.+.
T Consensus 794 ~lI 796 (1195)
T PLN03137 794 HMI 796 (1195)
T ss_pred HHH
Confidence 554
No 36
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.4e-33 Score=252.28 Aligned_cols=228 Identities=18% Similarity=0.230 Sum_probs=167.5
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCch-hhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSK-QVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~-~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
|+||.+....+.+...+++++||||||++.+||. +++.+..+......-++.+++++|||.++....- +...+...
T Consensus 111 pe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~---i~~~l~~~ 187 (591)
T TIGR01389 111 PERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQD---IRELLRLA 187 (591)
T ss_pred hhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHH---HHHHcCCC
Confidence 4555443334455667899999999999998873 4444444433222224566999999998875422 11222212
Q ss_pred ceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS 159 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (269)
+...+. .. ....++ .+.......+...+.+.+....+.++||||+|++.++. +++.|... ++
T Consensus 188 ~~~~~~-~~--~~r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~----------la~~L~~~---g~ 249 (591)
T TIGR01389 188 DANEFI-TS--FDRPNL--RFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEE----------LAERLESQ---GI 249 (591)
T ss_pred CCCeEe-cC--CCCCCc--EEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHH----------HHHHHHhC---CC
Confidence 222211 11 111222 23333445677788888887777899999999997555 67777665 68
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEE
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~ 239 (269)
.+..+||+|+..+|..+.+.|.+|+.+|||||+++++|+|+|++++|||+++|.+.++|.||+||+||.| ..|.+++
T Consensus 250 ~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G---~~~~~il 326 (591)
T TIGR01389 250 SALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDG---LPAEAIL 326 (591)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCC---CCceEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998 7888999
Q ss_pred ecCchhHHHHHHH
Q 024287 240 IITSEELFVLQRY 252 (269)
Q Consensus 240 ~~~~~~~~~~~~~ 252 (269)
++++.|...+..+
T Consensus 327 ~~~~~d~~~~~~~ 339 (591)
T TIGR01389 327 LYSPADIALLKRR 339 (591)
T ss_pred ecCHHHHHHHHHH
Confidence 9988876654443
No 37
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-33 Score=241.56 Aligned_cols=243 Identities=25% Similarity=0.366 Sum_probs=205.0
Q ss_pred CchhhHHHHhCc--eecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhccc
Q 024287 1 MGSLCQLIEKHI--FKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTK 78 (269)
Q Consensus 1 pgrl~~~l~~~~--~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~ 78 (269)
|.||..++..+. ++++.|..+|+||+|.+++...+...+..|+.... .+...+-+||||++..++.......
T Consensus 270 P~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~-s~~i~~a~FSat~~~~VEE~~~~i~----- 343 (593)
T KOG0344|consen 270 PMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQ-SPDIRVALFSATISVYVEEWAELIK----- 343 (593)
T ss_pred HHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhc-CcchhhhhhhccccHHHHHHHHHhh-----
Confidence 678889999988 89999999999999999988446677777776653 5788999999999998886665443
Q ss_pred CceeEEeecCcccCCCcceeEEEEecC-cchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC
Q 024287 79 SDVVHVHVNAIKPLPSCLHHRFVICGK-KMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG 157 (269)
Q Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (269)
.+...+-+.........+.|....|.. ..|+..+.+++...-..+++||+.+.+.|.. +...|. ..+
T Consensus 344 ~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~----------L~~~L~--~~~ 411 (593)
T KOG0344|consen 344 SDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQ----------LFEELE--IYD 411 (593)
T ss_pred ccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHH----------HHHHhh--hcc
Confidence 344555555555556667888777755 5799999999999888999999999987555 555554 234
Q ss_pred CCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEE
Q 024287 158 SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237 (269)
Q Consensus 158 ~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~ 237 (269)
++++..+||+.++.+|.+++++|+.|++++|+||++++||+|+.+++.|||||+|.+..+|+||+||+||.| ..|++
T Consensus 412 ~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag---~~g~A 488 (593)
T KOG0344|consen 412 NINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAG---RSGKA 488 (593)
T ss_pred CcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCC---CCcce
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred EEecCchhHHHHHHHHHHhcCcccccc
Q 024287 238 TSIITSEELFVLQRYENELKFKSEELT 264 (269)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (269)
|+|++..|...+.-+......+.-++|
T Consensus 489 itfytd~d~~~ir~iae~~~~sG~evp 515 (593)
T KOG0344|consen 489 ITFYTDQDMPRIRSIAEVMEQSGCEVP 515 (593)
T ss_pred EEEeccccchhhhhHHHHHHHcCCcch
Confidence 999999999998888877765555554
No 38
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-33 Score=235.34 Aligned_cols=237 Identities=26% Similarity=0.350 Sum_probs=186.9
Q ss_pred CchhhHHHH-hCceecCcccEEEEeccccccCCchhhhHHHHHHhhhc--------------------------------
Q 024287 1 MGSLCQLIE-KHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS-------------------------------- 47 (269)
Q Consensus 1 pgrl~~~l~-~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~-------------------------------- 47 (269)
||||.|||. -+.|+|++++++||||||+|++..++ .++-.++....
T Consensus 278 PGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ-~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~ 356 (620)
T KOG0350|consen 278 PGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQ-EWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGK 356 (620)
T ss_pred chHHHHhccCCCCcchhhceEEEechHHHHHHHHHH-HHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCC
Confidence 999999999 58899999999999999999866533 22222222111
Q ss_pred cCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeec----CcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCc
Q 024287 48 SCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVN----AIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPES 123 (269)
Q Consensus 48 ~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~ 123 (269)
...+.+.+.+|||+.+.-..+.+.- ...+....+. .....+..+.+.++.+....+...+..++...+..+
T Consensus 357 ~~~~l~kL~~satLsqdP~Kl~~l~-----l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r 431 (620)
T KOG0350|consen 357 LYPPLWKLVFSATLSQDPSKLKDLT-----LHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNR 431 (620)
T ss_pred cCchhHhhhcchhhhcChHHHhhhh-----cCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcce
Confidence 1233457788888877655444321 1222222222 234567778899999988899999999999999999
Q ss_pred eEEEeeccchhhhhcCCCCchHHHHHHHh-hhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCC
Q 024287 124 GIIFVGEQSEKSKKAGNAPSTTLLVDFLS-NSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPE 202 (269)
Q Consensus 124 ~lIF~~s~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~ 202 (269)
+|+|++|.+.+-+ +...|. .....+.++..+.|+++.+.|.+.++.|..|++++|||||+++||+|+-+
T Consensus 432 ~lcf~~S~~sa~R----------l~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~ 501 (620)
T KOG0350|consen 432 TLCFVNSVSSANR----------LAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVND 501 (620)
T ss_pred EEEEecchHHHHH----------HHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccc
Confidence 9999999997544 555555 33334677888999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHHHHHh
Q 024287 203 TTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYENEL 256 (269)
Q Consensus 203 ~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 256 (269)
++.|||||+|.+..+|+||+||++|.| +.|.|+.+++.++...+.++.+..
T Consensus 502 v~~VINYd~P~~~ktyVHR~GRTARAg---q~G~a~tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 502 VDNVINYDPPASDKTYVHRAGRTARAG---QDGYAITLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred cceEeecCCCchhhHHHHhhccccccc---CCceEEEeeccccchHHHHHHHHh
Confidence 999999999999999999999999999 889999999998887777666655
No 39
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-32 Score=247.98 Aligned_cols=240 Identities=25% Similarity=0.404 Sum_probs=207.0
Q ss_pred CchhhHHHHhCceecCccc---EEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcc
Q 024287 1 MGSLCQLIEKHIFKLESVQ---VLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWT 77 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~---~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~ 77 (269)
|||.+|++-.....+.+++ ++|+||+|+|++.++. +.+..|++.++ +..|++++|||+|..+..++..+.
T Consensus 496 pGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfe-Pq~~~Ii~nlr--pdrQtvlfSatfpr~m~~la~~vl---- 568 (997)
T KOG0334|consen 496 PGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFE-PQITRILQNLR--PDRQTVLFSATFPRSMEALARKVL---- 568 (997)
T ss_pred cchhhhhHhhcCCccccccccceeeechhhhhheeccC-cccchHHhhcc--hhhhhhhhhhhhhHHHHHHHHHhh----
Confidence 8999999988777666666 9999999999988844 88888999886 899999999999998777765443
Q ss_pred cCceeEEeecCcccCCCcceeEEEEec-CcchHHHHHHHHhhc-CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhc
Q 024287 78 KSDVVHVHVNAIKPLPSCLHHRFVICG-KKMKYQTLLSLIQSD-APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY 155 (269)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~-~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (269)
. .++.+.+.......+.+.+.+..+. ..+|+..|.++|... ..+++||||.+.+. +..+.+.|++.
T Consensus 569 ~-~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~----------~d~l~~~L~~a- 636 (997)
T KOG0334|consen 569 K-KPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEK----------ADALLRDLQKA- 636 (997)
T ss_pred c-CCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchH----------HHHHHHHHHhc-
Confidence 2 4444666666677888999999998 778999999999754 46899999999886 55577778765
Q ss_pred CCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCe
Q 024287 156 KGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW 235 (269)
Q Consensus 156 ~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g 235 (269)
++++..+||+.++.+|..++++|+++...+||+|+++++|+|+++..+|||||+|...++|+||+||+||.| ++|
T Consensus 637 --g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgrag---rkg 711 (997)
T KOG0334|consen 637 --GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAG---RKG 711 (997)
T ss_pred --CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCC---ccc
Confidence 788888999999999999999999999999999999999999999999999999999999999999999998 889
Q ss_pred EEEEecCchhHHHHHHHHHHhcCcccccc
Q 024287 236 TVTSIITSEELFVLQRYENELKFKSEELT 264 (269)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (269)
.+++|+++.+......|++.+...-+..|
T Consensus 712 ~AvtFi~p~q~~~a~dl~~al~~~~~~~P 740 (997)
T KOG0334|consen 712 AAVTFITPDQLKYAGDLCKALELSKQPVP 740 (997)
T ss_pred eeEEEeChHHhhhHHHHHHHHHhccCCCc
Confidence 99999999999999999999854444443
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.98 E-value=3e-31 Score=248.99 Aligned_cols=250 Identities=18% Similarity=0.210 Sum_probs=160.4
Q ss_pred CchhhHHHHhCce--ecCcccEEEEeccccccCCchhhhHHHHHHhhhc--cCCCccEEEEeccCCchhhHHHHHHhhhc
Q 024287 1 MGSLCQLIEKHIF--KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS--SCNNRQTVFASASIPQHRRFLHNCIQQKW 76 (269)
Q Consensus 1 pgrl~~~l~~~~~--~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~--~~~~~q~i~~SATl~~~~~~l~~~~~~~~ 76 (269)
|++|..++.+..+ .++++++||+||+|.+.+.. ....+...+..+. .+.+.|++++|||+++... +...+....
T Consensus 154 PE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~-RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~-va~~L~~~~ 231 (876)
T PRK13767 154 PESLAILLNSPKFREKLRTVKWVIVDEIHSLAENK-RGVHLSLSLERLEELAGGEFVRIGLSATIEPLEE-VAKFLVGYE 231 (876)
T ss_pred HHHHHHHhcChhHHHHHhcCCEEEEechhhhccCc-cHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHH-HHHHhcCcc
Confidence 7888888877655 68999999999999887653 2233333333221 1357899999999987422 222221110
Q ss_pred c---cCceeEEeecCcccCCCcceeE-----EEEecCcc----hHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCch
Q 024287 77 T---KSDVVHVHVNAIKPLPSCLHHR-----FVICGKKM----KYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPST 144 (269)
Q Consensus 77 ~---~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~----k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~ 144 (269)
. ..+...+...... ...+... ........ ....+.++++ .++++||||||++.|+.
T Consensus 232 ~~~~~r~~~iv~~~~~k--~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~-------- 299 (876)
T PRK13767 232 DDGEPRDCEIVDARFVK--PFDIKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAER-------- 299 (876)
T ss_pred ccCCCCceEEEccCCCc--cceEEEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHH--------
Confidence 0 1111222111100 0001000 00111111 2233333333 35789999999998666
Q ss_pred HHHHHHHhhhcC---CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccc
Q 024287 145 TLLVDFLSNSYK---GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHR 221 (269)
Q Consensus 145 ~~~~~~l~~~~~---~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr 221 (269)
++..|.+.+. .+..+..+||+|++.+|..+++.|++|..++||||+++++|+|+|++++||+++.|.+..+|+||
T Consensus 300 --la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQR 377 (876)
T PRK13767 300 --VLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQR 377 (876)
T ss_pred --HHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHh
Confidence 4555554332 23579999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCeEEEEecCchhH-HHHHHHHHHhcCccccccccc
Q 024287 222 AGRTGRKPFSDEKWTVTSIITSEEL-FVLQRYENELKFKSEELTLQT 267 (269)
Q Consensus 222 ~GR~gR~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (269)
+||+||.+.....|.++. .+..|. +...-.+......++.+.++.
T Consensus 378 iGRaGR~~g~~~~g~ii~-~~~~~l~e~~~~~~~~~~~~ie~~~~~~ 423 (876)
T PRK13767 378 IGRAGHRLGEVSKGRIIV-VDRDDLVECAVLLKKAREGKIDRVHIPK 423 (876)
T ss_pred cccCCCCCCCCCcEEEEE-cCchhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 999999854335676665 444553 333334444555566544443
No 41
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=3.6e-32 Score=224.11 Aligned_cols=241 Identities=25% Similarity=0.301 Sum_probs=207.9
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
|||++.+.-.=.+.|+.+.+|||||+|.++..|++ +.+.+++..++ ..+|+++||||+|..+-... +-+..+
T Consensus 148 pgr~~h~~vem~l~l~sveyVVfdEadrlfemgfq-eql~e~l~rl~--~~~QTllfSatlp~~lv~fa-----kaGl~~ 219 (529)
T KOG0337|consen 148 PGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQ-EQLHEILSRLP--ESRQTLLFSATLPRDLVDFA-----KAGLVP 219 (529)
T ss_pred CceeeeeehheeccccceeeeeehhhhHHHhhhhH-HHHHHHHHhCC--CcceEEEEeccCchhhHHHH-----HccCCC
Confidence 88988888887889999999999999999999966 88999999986 77799999999998744332 233456
Q ss_pred eeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcC-CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDA-PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS 159 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~-~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (269)
++.+.++-+......++..+..+...+|..+|+.++.... .++++||+.++.- ++.+...+... ++
T Consensus 220 p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~h----------ve~~~~ll~~~---g~ 286 (529)
T KOG0337|consen 220 PVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHH----------VEYVRGLLRDF---GG 286 (529)
T ss_pred CceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccch----------HHHHHHHHHhc---CC
Confidence 6666666666677788999999999999999999998764 4789999999874 34455666655 67
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEE
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~ 239 (269)
.+..++|.|.+..|.....+|..++..+||.|++++||+|+|..+.|||||+|.+..-|+||+||+.|.| +.|.+|.
T Consensus 287 ~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~arag---rtg~aYs 363 (529)
T KOG0337|consen 287 EGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAG---RTGRAYS 363 (529)
T ss_pred CccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcc---ccceEEE
Confidence 7888999999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred ecCchhHHHHHHHHHHhcCccccccc
Q 024287 240 IITSEELFVLQRYENELKFKSEELTL 265 (269)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
++.+.+..++-.+.-.++..+...+.
T Consensus 364 ~V~~~~~~yl~DL~lflgr~~~~~~~ 389 (529)
T KOG0337|consen 364 LVASTDDPYLLDLQLFLGRPLIFAIS 389 (529)
T ss_pred EEecccchhhhhhhhhcCCceeeccc
Confidence 99999999999999999887765443
No 42
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.98 E-value=1.9e-31 Score=233.83 Aligned_cols=218 Identities=17% Similarity=0.188 Sum_probs=163.2
Q ss_pred cCcccEEEEeccccccCCc-hhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCC
Q 024287 15 LESVQVLVIDEVDFLFNSS-KQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLP 93 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~-~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (269)
--.+.++||||||++.+|| ++++.+..+-.....-++++++.+|||.++.+.. -+...+....+..+.... ..
T Consensus 129 ~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~---DI~~~L~l~~~~~~~~sf---dR 202 (590)
T COG0514 129 RLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRD---DIREQLGLQDANIFRGSF---DR 202 (590)
T ss_pred hCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHH---HHHHHhcCCCcceEEecC---CC
Confidence 3456699999999999998 6677777776655444589999999999877442 122333333322222221 12
Q ss_pred CcceeEEEEec-CcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhH
Q 024287 94 SCLHHRFVICG-KKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172 (269)
Q Consensus 94 ~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~ 172 (269)
.++........ ...+...+.. +.....+..||||.|++.++. ++++|.+. ++.+..||++|+..+
T Consensus 203 pNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~----------ia~~L~~~---g~~a~~YHaGl~~~e 268 (590)
T COG0514 203 PNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEE----------LAEWLRKN---GISAGAYHAGLSNEE 268 (590)
T ss_pred chhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHH----------HHHHHHHC---CCceEEecCCCCHHH
Confidence 23333333222 1223332222 113345679999999997544 88899887 789999999999999
Q ss_pred HHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHH
Q 024287 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRY 252 (269)
Q Consensus 173 r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~ 252 (269)
|..+.+.|..++.+|+|||.++++|||-|++.+|||||+|.+.++|+|-+|||||.| ....|+.|+++.|..+.+.+
T Consensus 269 R~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG---~~a~aill~~~~D~~~~~~~ 345 (590)
T COG0514 269 RERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDG---LPAEAILLYSPEDIRWQRYL 345 (590)
T ss_pred HHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCC---CcceEEEeeccccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 78899999999987766555
Q ss_pred HHH
Q 024287 253 ENE 255 (269)
Q Consensus 253 ~~~ 255 (269)
.+.
T Consensus 346 i~~ 348 (590)
T COG0514 346 IEQ 348 (590)
T ss_pred HHh
Confidence 444
No 43
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.4e-30 Score=240.54 Aligned_cols=233 Identities=17% Similarity=0.203 Sum_probs=168.1
Q ss_pred CchhhHHHHhCceecCcccEEEEeccc-cccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVD-FLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~-~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
||+|++++++ ...++++++|||||+| ++++.+.....+..+...++ .+.|+++||||++... +. .+..
T Consensus 98 ~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr--~dlqlIlmSATl~~~~--l~-----~~l~- 166 (819)
T TIGR01970 98 EGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLR--EDLKILAMSATLDGER--LS-----SLLP- 166 (819)
T ss_pred CcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcC--CCceEEEEeCCCCHHH--HH-----HHcC-
Confidence 7999999987 4689999999999999 46665533334445555444 6799999999998642 22 2221
Q ss_pred ceeEEeecCcccCCCcceeEEEEecCcchH-----HHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhh
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFVICGKKMKY-----QTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS 154 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~-----~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~ 154 (269)
+...+..... .-.+.++|......++. ..+..++.. ..+++|||++++.+++. +.+.|.+.
T Consensus 167 ~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~----------l~~~L~~~ 232 (819)
T TIGR01970 167 DAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRR----------VQEQLAER 232 (819)
T ss_pred CCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHH----------HHHHHHhh
Confidence 2222332211 12356667665544332 234444433 35889999999887544 66667654
Q ss_pred cCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCC------------------cc
Q 024287 155 YKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRS------------------AI 216 (269)
Q Consensus 155 ~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~------------------~~ 216 (269)
+..++.+..+||+|++.+|.++++.|++|..+|+|||+++++|+|+|++++||++++|.. .+
T Consensus 233 ~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSka 312 (819)
T TIGR01970 233 LDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQA 312 (819)
T ss_pred cCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHH
Confidence 434678999999999999999999999999999999999999999999999999998752 34
Q ss_pred ccccccccCCCCCCCCCCeEEEEecCchhHHHHHHHHHHhcCccccccc
Q 024287 217 DYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYENELKFKSEELTL 265 (269)
Q Consensus 217 ~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
+|.||.||+||. ..|.||.++++.+... +......+|...++
T Consensus 313 sa~QR~GRAGR~----~~G~cyrL~t~~~~~~---l~~~~~PEI~r~~L 354 (819)
T TIGR01970 313 SATQRAGRAGRL----EPGVCYRLWSEEQHQR---LPAQDEPEILQADL 354 (819)
T ss_pred HHHhhhhhcCCC----CCCEEEEeCCHHHHHh---hhcCCCcceeccCc
Confidence 589999999998 5899999999877654 33344444444444
No 44
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.97 E-value=1.8e-30 Score=248.59 Aligned_cols=256 Identities=17% Similarity=0.106 Sum_probs=159.6
Q ss_pred CchhhHHHHhCc-eecCcccEEEEeccccccCC--chhhh-HHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhc
Q 024287 1 MGSLCQLIEKHI-FKLESVQVLVIDEVDFLFNS--SKQVS-SLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKW 76 (269)
Q Consensus 1 pgrl~~~l~~~~-~~l~~~~~lViDE~~~l~~~--~~~~~-~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~ 76 (269)
|++|..++.++. ..++++++|||||+|.+.+. |.+.. .++++...+ +.+.|+|++|||+++. +.+.+.+
T Consensus 107 PEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--~~~~QrIgLSATI~n~-eevA~~L---- 179 (1490)
T PRK09751 107 PESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--HTSAQRIGLSATVRSA-SDVAAFL---- 179 (1490)
T ss_pred HHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC--CCCCeEEEEEeeCCCH-HHHHHHh----
Confidence 788988887653 57999999999999988854 32222 233333322 3678999999999885 3333322
Q ss_pred ccCceeEEeecCcccCCCcceeEEEEecCcch--------------------H-HHHHHHHhh-cCCCceEEEeeccchh
Q 024287 77 TKSDVVHVHVNAIKPLPSCLHHRFVICGKKMK--------------------Y-QTLLSLIQS-DAPESGIIFVGEQSEK 134 (269)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k--------------------~-~~l~~ll~~-~~~~~~lIF~~s~~~~ 134 (269)
...+++.+.. ........+.. ++...+..+ . .....++.. ..+.++||||||++.|
T Consensus 180 ~g~~pv~Iv~-~~~~r~~~l~v-~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~A 257 (1490)
T PRK09751 180 GGDRPVTVVN-PPAMRHPQIRI-VVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLA 257 (1490)
T ss_pred cCCCCEEEEC-CCCCcccceEE-EEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHH
Confidence 2222333322 22211222321 222211100 0 011122322 2357899999999998
Q ss_pred hhhcCCCCchHH-----------HHHHHhhhc---------CCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc
Q 024287 135 SKKAGNAPSTTL-----------LVDFLSNSY---------KGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA 194 (269)
Q Consensus 135 ~~~~~~~~~~~~-----------~~~~l~~~~---------~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~ 194 (269)
+.++..++.... ....+.+.- .....+..|||+|++++|..+++.|++|+.++||||+.+
T Consensus 258 E~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssL 337 (1490)
T PRK09751 258 EKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSL 337 (1490)
T ss_pred HHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHH
Confidence 886432221100 000000000 001226789999999999999999999999999999999
Q ss_pred cccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCc-hhH-HHHHHHHHHhcCccccccccc
Q 024287 195 ARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITS-EEL-FVLQRYENELKFKSEELTLQT 267 (269)
Q Consensus 195 ~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (269)
++|||++++++|||++.|.+..+|+||+||+||.. +..+.++++... .+. +....++..+...++++..+.
T Consensus 338 ELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~--gg~s~gli~p~~r~dlle~~~~ve~~l~g~iE~~~~p~ 410 (1490)
T PRK09751 338 ELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQV--GGVSKGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPH 410 (1490)
T ss_pred HccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCC--CCccEEEEEeCcHHHHHhhHHHHHHHhcCCCCccCCCC
Confidence 99999999999999999999999999999999973 233444433332 222 223346777777777765554
No 45
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.3e-32 Score=212.18 Aligned_cols=208 Identities=22% Similarity=0.353 Sum_probs=183.4
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
|||++.+++++.++|++++.+|+||+|+|+.+-+.+..+.++++..+ ...|+.+||||+++.+......++ -+
T Consensus 169 PGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp--~~KQvmmfsatlskeiRpvC~kFm-----Qd 241 (387)
T KOG0329|consen 169 PGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTP--HEKQVMMFSATLSKEIRPVCHKFM-----QD 241 (387)
T ss_pred cHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCc--ccceeeeeeeecchhhHHHHHhhh-----cC
Confidence 99999999999999999999999999999988889999999999976 889999999999999888876665 35
Q ss_pred eeEEeecCc-ccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC
Q 024287 81 VVHVHVNAI-KPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS 159 (269)
Q Consensus 81 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (269)
+..++++.+ ..+..+++|+|+...+++|-..+.++|......+++||+.|.. .+
T Consensus 242 PmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~-------------Rl------------ 296 (387)
T KOG0329|consen 242 PMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQ-------------RL------------ 296 (387)
T ss_pred chhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhh-------------hh------------
Confidence 566666554 4577789999999999999999999999999999999998843 10
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEE
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~ 239 (269)
.| ..+ +|+|++++||+|+..++.++|||+|.+..+|.||+||+||.| .+|.++.
T Consensus 297 -------------------~f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfG---tkglait 350 (387)
T KOG0329|consen 297 -------------------SF---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG---TKGLAIT 350 (387)
T ss_pred -------------------hh---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccc---cccceee
Confidence 02 224 899999999999999999999999999999999999999999 8999999
Q ss_pred ecC-chhHHHHHHHHHHhcCcccccccc
Q 024287 240 IIT-SEELFVLQRYENELKFKSEELTLQ 266 (269)
Q Consensus 240 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 266 (269)
|++ +.+...+..+...++..+.++|-+
T Consensus 351 fvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 351 FVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred hhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 987 678889999999999999998864
No 46
>PRK02362 ski2-like helicase; Provisional
Probab=99.97 E-value=1.4e-30 Score=241.96 Aligned_cols=237 Identities=18% Similarity=0.211 Sum_probs=157.1
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhc-cCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS-SCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~-~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
|+|+.++++++..++++++++|+||+|.+.+.+ ....++.++..++ ...+.|++++|||+++..+ +...+.......
T Consensus 121 pek~~~llr~~~~~l~~v~lvViDE~H~l~d~~-rg~~le~il~rl~~~~~~~qii~lSATl~n~~~-la~wl~~~~~~~ 198 (737)
T PRK02362 121 SEKVDSLLRNGAPWLDDITCVVVDEVHLIDSAN-RGPTLEVTLAKLRRLNPDLQVVALSATIGNADE-LADWLDAELVDS 198 (737)
T ss_pred HHHHHHHHhcChhhhhhcCEEEEECccccCCCc-chHHHHHHHHHHHhcCCCCcEEEEcccCCCHHH-HHHHhCCCcccC
Confidence 789999999888889999999999999776654 4466666665553 2367899999999987532 322221111100
Q ss_pred c--eeEEee----cCcccCCCcceeEEEEecC-cchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchH-------
Q 024287 80 D--VVHVHV----NAIKPLPSCLHHRFVICGK-KMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTT------- 145 (269)
Q Consensus 80 ~--~~~~~~----~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~------- 145 (269)
. ++.+.. ........ .+..+.... ......+.+.+. .++++||||+|++.|+.+|..+....
T Consensus 199 ~~rpv~l~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~ 274 (737)
T PRK02362 199 EWRPIDLREGVFYGGAIHFDD--SQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAA 274 (737)
T ss_pred CCCCCCCeeeEecCCeecccc--ccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHH
Confidence 0 000000 00000000 111111111 122333333332 45899999999999888764432211
Q ss_pred ------HHHHHHhhhcCC----------CCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEE-
Q 024287 146 ------LLVDFLSNSYKG----------SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYN- 208 (269)
Q Consensus 146 ------~~~~~l~~~~~~----------~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~- 208 (269)
.+.+.+.+.... ...+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+
T Consensus 275 ~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~ 354 (737)
T PRK02362 275 ERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD 354 (737)
T ss_pred HHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec
Confidence 011111100000 135889999999999999999999999999999999999999999999997
Q ss_pred ---ec-----CCCCccccccccccCCCCCCCCCCeEEEEecCch
Q 024287 209 ---FD-----LPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSE 244 (269)
Q Consensus 209 ---~~-----~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~ 244 (269)
|| .|.+..+|.||+||+||.|.+ ..|.+++++...
T Consensus 355 ~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d-~~G~~ii~~~~~ 397 (737)
T PRK02362 355 YRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD-PYGEAVLLAKSY 397 (737)
T ss_pred ceeecCCCCceeCCHHHHHHHhhcCCCCCCC-CCceEEEEecCc
Confidence 66 688999999999999999965 568999888764
No 47
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.97 E-value=6.3e-30 Score=236.60 Aligned_cols=219 Identities=16% Similarity=0.240 Sum_probs=162.4
Q ss_pred CchhhHHHHhCceecCcccEEEEecccc-ccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDF-LFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~-l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
||+|++++++ ...++++++|||||+|. .++.+.....+.++++.++ .+.|+++||||++.. .+. .+..
T Consensus 101 ~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr--~~lqlilmSATl~~~--~l~-----~~~~- 169 (812)
T PRK11664 101 EGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLR--DDLKLLIMSATLDND--RLQ-----QLLP- 169 (812)
T ss_pred hhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCC--ccceEEEEecCCCHH--HHH-----HhcC-
Confidence 7999999986 45899999999999996 3443323344455555554 678999999999864 222 2221
Q ss_pred ceeEEeecCcccCCCcceeEEEEecCcchHH-----HHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhh
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFVICGKKMKYQ-----TLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS 154 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~-----~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~ 154 (269)
+...+.... . .-.+.++|...+...+.. .+..++.. ..+.+|||++++.+++. +.+.|.+.
T Consensus 170 ~~~~I~~~g-r--~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~----------l~~~L~~~ 235 (812)
T PRK11664 170 DAPVIVSEG-R--SFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQR----------VQEQLASR 235 (812)
T ss_pred CCCEEEecC-c--cccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHH----------HHHHHHHh
Confidence 222232221 1 123677777665554443 34444433 35899999999997555 66777664
Q ss_pred cCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCC------------------Ccc
Q 024287 155 YKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPR------------------SAI 216 (269)
Q Consensus 155 ~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~------------------~~~ 216 (269)
+..++.+..+||+|+..+|.++++.|++|..+|+|||+++++|+|+|++++||+++++. |.+
T Consensus 236 ~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSka 315 (812)
T PRK11664 236 VASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQA 315 (812)
T ss_pred ccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechh
Confidence 44467899999999999999999999999999999999999999999999999988764 335
Q ss_pred ccccccccCCCCCCCCCCeEEEEecCchhHHH
Q 024287 217 DYLHRAGRTGRKPFSDEKWTVTSIITSEELFV 248 (269)
Q Consensus 217 ~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~ 248 (269)
+|.||.||+||. ..|.||.++++.+...
T Consensus 316 sa~QR~GRaGR~----~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 316 SMTQRAGRAGRL----EPGICLHLYSKEQAER 343 (812)
T ss_pred hhhhhccccCCC----CCcEEEEecCHHHHhh
Confidence 899999999998 4899999999876654
No 48
>PRK00254 ski2-like helicase; Provisional
Probab=99.97 E-value=1.6e-29 Score=234.35 Aligned_cols=230 Identities=17% Similarity=0.229 Sum_probs=156.0
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
|+++.++++++..++++++++|+||+|.+.+.+ ....++.++..+. .+.|++++|||+++. ..+...+ ...
T Consensus 122 pe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~-rg~~le~il~~l~--~~~qiI~lSATl~n~-~~la~wl-----~~~ 192 (720)
T PRK00254 122 AEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYD-RGATLEMILTHML--GRAQILGLSATVGNA-EELAEWL-----NAE 192 (720)
T ss_pred HHHHHHHHhCCchhhhcCCEEEEcCcCccCCcc-chHHHHHHHHhcC--cCCcEEEEEccCCCH-HHHHHHh-----CCc
Confidence 788999999888889999999999999877665 4577888888775 679999999999875 3333222 111
Q ss_pred eeEEeecCcccCCCc-ceeEEEEecCc--c-----hHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCch--------
Q 024287 81 VVHVHVNAIKPLPSC-LHHRFVICGKK--M-----KYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPST-------- 144 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~-i~~~~~~~~~~--~-----k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~-------- 144 (269)
.......+. +.... ..+.+....+. . ....+.+.++ .++++||||+|++.|+.+|..+...
T Consensus 193 ~~~~~~rpv-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~ 269 (720)
T PRK00254 193 LVVSDWRPV-KLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKP 269 (720)
T ss_pred cccCCCCCC-cceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCch
Confidence 111011100 00000 01111111111 1 1123334443 3579999999999988865333110
Q ss_pred -----HHHHHH---------HhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEE--
Q 024287 145 -----TLLVDF---------LSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYN-- 208 (269)
Q Consensus 145 -----~~~~~~---------l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~-- 208 (269)
..+.+. |.+.. ...+.++||+|++.+|..+++.|++|.++|||||+.+++|+|+|.+++||.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~L~~~l--~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~ 347 (720)
T PRK00254 270 ELRALKELADSLEENPTNEKLKKAL--RGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDT 347 (720)
T ss_pred hHHHHHHHHHHHhcCCCcHHHHHHH--hhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCc
Confidence 001111 11111 135899999999999999999999999999999999999999999999994
Q ss_pred -----ecCCC-CccccccccccCCCCCCCCCCeEEEEecCchh
Q 024287 209 -----FDLPR-SAIDYLHRAGRTGRKPFSDEKWTVTSIITSEE 245 (269)
Q Consensus 209 -----~~~p~-~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~ 245 (269)
++.|. +..+|.||+||+||.|.+ ..|.++++++..+
T Consensus 348 ~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d-~~G~~ii~~~~~~ 389 (720)
T PRK00254 348 KRYSNFGWEDIPVLEIQQMMGRAGRPKYD-EVGEAIIVATTEE 389 (720)
T ss_pred eEcCCCCceeCCHHHHHHhhhccCCCCcC-CCceEEEEecCcc
Confidence 45443 567999999999999754 7889998887654
No 49
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.96 E-value=9.9e-29 Score=223.51 Aligned_cols=210 Identities=18% Similarity=0.222 Sum_probs=149.5
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCC
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLP 93 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (269)
.++++++||+||||.+...+ ..+..++.... ...+|+++||||++..++.+...+ .++..+.+. ....
T Consensus 288 ~L~~v~~VVIDEaHEr~~~~---DllL~llk~~~-~~~rq~ILmSATl~~dv~~l~~~~------~~p~~I~I~--grt~ 355 (675)
T PHA02653 288 KLFDYGTVIIDEVHEHDQIG---DIIIAVARKHI-DKIRSLFLMTATLEDDRDRIKEFF------PNPAFVHIP--GGTL 355 (675)
T ss_pred ccccCCEEEccccccCccch---hHHHHHHHHhh-hhcCEEEEEccCCcHhHHHHHHHh------cCCcEEEeC--CCcC
Confidence 58889999999999887666 34455554442 133599999999998766554322 234444443 2223
Q ss_pred CcceeEEEEecC----------cchHHHHHHHHhh---cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCc
Q 024287 94 SCLHHRFVICGK----------KMKYQTLLSLIQS---DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSD 160 (269)
Q Consensus 94 ~~i~~~~~~~~~----------~~k~~~l~~ll~~---~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (269)
..+.+.|+.... ..+.. +...+.. ..++++|||++++.+++. +.+.|.+.. .++.
T Consensus 356 ~pV~~~yi~~~~~~~~~~~y~~~~k~~-~l~~L~~~~~~~~g~iLVFlpg~~ei~~----------l~~~L~~~~-~~~~ 423 (675)
T PHA02653 356 FPISEVYVKNKYNPKNKRAYIEEEKKN-IVTALKKYTPPKGSSGIVFVASVSQCEE----------YKKYLEKRL-PIYD 423 (675)
T ss_pred CCeEEEEeecCcccccchhhhHHHHHH-HHHHHHHhhcccCCcEEEEECcHHHHHH----------HHHHHHhhc-CCce
Confidence 456666654321 11222 2333322 234689999999987544 666676543 2478
Q ss_pred eEEecccCChhHHHHHHHHH-hcCCccEEEEeccccccCCCCCCCeEEEec---CCC---------CccccccccccCCC
Q 024287 161 VLLLEEEMNFNSRAASLLEV-RQGGGYLLVSTDIAARGIDLPETTHIYNFD---LPR---------SAIDYLHRAGRTGR 227 (269)
Q Consensus 161 v~~~h~~~~~~~r~~~~~~f-~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~---~p~---------~~~~~~qr~GR~gR 227 (269)
+.++||+|++. ++.+++| ++|+.+|||||+++++|+|+|++++||++| .|. |.++|.||+||+||
T Consensus 424 v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR 501 (675)
T PHA02653 424 FYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGR 501 (675)
T ss_pred EEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCC
Confidence 99999999975 4667777 689999999999999999999999999998 565 78899999999999
Q ss_pred CCCCCCCeEEEEecCchhHHHHHHHH
Q 024287 228 KPFSDEKWTVTSIITSEELFVLQRYE 253 (269)
Q Consensus 228 ~~~~~~~g~~~~~~~~~~~~~~~~~~ 253 (269)
. ..|.|+.|+++.+...+.++.
T Consensus 502 ~----~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 502 V----SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred C----CCCeEEEEECHHHhHHHHHHh
Confidence 9 479999999987765444443
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.96 E-value=1.7e-28 Score=228.90 Aligned_cols=216 Identities=15% Similarity=0.115 Sum_probs=154.5
Q ss_pred hCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCc
Q 024287 10 KHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAI 89 (269)
Q Consensus 10 ~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (269)
++.+.+++++++||||+|++ + ......+..++ .+.|+++||||+.+....+. .....+...+...+.
T Consensus 566 ~~~v~f~~L~llVIDEahrf---g---v~~~~~L~~~~--~~~~vL~~SATpiprtl~~~-----l~g~~d~s~I~~~p~ 632 (926)
T TIGR00580 566 QKDVKFKDLGLLIIDEEQRF---G---VKQKEKLKELR--TSVDVLTLSATPIPRTLHMS-----MSGIRDLSIIATPPE 632 (926)
T ss_pred hCCCCcccCCEEEeeccccc---c---hhHHHHHHhcC--CCCCEEEEecCCCHHHHHHH-----HhcCCCcEEEecCCC
Confidence 45678999999999999973 3 12233444443 67899999999765432221 122234444444333
Q ss_pred ccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCC
Q 024287 90 KPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMN 169 (269)
Q Consensus 90 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~ 169 (269)
. ...+.+++...........+...+ ..+++++||||+++.++ .+++.|++.++ +..+..+||+|+
T Consensus 633 ~--R~~V~t~v~~~~~~~i~~~i~~el--~~g~qv~if~n~i~~~e----------~l~~~L~~~~p-~~~v~~lHG~m~ 697 (926)
T TIGR00580 633 D--RLPVRTFVMEYDPELVREAIRREL--LRGGQVFYVHNRIESIE----------KLATQLRELVP-EARIAIAHGQMT 697 (926)
T ss_pred C--ccceEEEEEecCHHHHHHHHHHHH--HcCCeEEEEECCcHHHH----------HHHHHHHHhCC-CCeEEEecCCCC
Confidence 2 123455544332221122222222 24689999999998644 46777777654 478999999999
Q ss_pred hhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCC-CccccccccccCCCCCCCCCCeEEEEecCc-----
Q 024287 170 FNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPR-SAIDYLHRAGRTGRKPFSDEKWTVTSIITS----- 243 (269)
Q Consensus 170 ~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~-~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~----- 243 (269)
+.+|.+++++|++|+.+|||||+++++|+|+|++++||+++.|. +..+|.||+||+||.| +.|.|++++.+
T Consensus 698 ~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g---~~g~aill~~~~~~l~ 774 (926)
T TIGR00580 698 ENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSK---KKAYAYLLYPHQKALT 774 (926)
T ss_pred HHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCC---CCeEEEEEECCcccCC
Confidence 99999999999999999999999999999999999999999875 6789999999999998 89999999854
Q ss_pred -hhHHHHHHHHHHh
Q 024287 244 -EELFVLQRYENEL 256 (269)
Q Consensus 244 -~~~~~~~~~~~~~ 256 (269)
...+.++.+++..
T Consensus 775 ~~~~~RL~~~~~~~ 788 (926)
T TIGR00580 775 EDAQKRLEAIQEFS 788 (926)
T ss_pred HHHHHHHHHHHHhh
Confidence 4455666666553
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=6.6e-28 Score=221.52 Aligned_cols=231 Identities=16% Similarity=0.132 Sum_probs=157.7
Q ss_pred CceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcc
Q 024287 11 HIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIK 90 (269)
Q Consensus 11 ~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (269)
+.+.+++++++|+||+|++.. . ++. .+... +.++++++||||..+....+. .+...+...+...+..
T Consensus 377 ~~v~~~~l~lvVIDE~Hrfg~-~-qr~----~l~~~--~~~~~iL~~SATp~prtl~~~-----~~g~~~~s~i~~~p~~ 443 (681)
T PRK10917 377 DDVEFHNLGLVIIDEQHRFGV-E-QRL----ALREK--GENPHVLVMTATPIPRTLAMT-----AYGDLDVSVIDELPPG 443 (681)
T ss_pred ccchhcccceEEEechhhhhH-H-HHH----HHHhc--CCCCCEEEEeCCCCHHHHHHH-----HcCCCceEEEecCCCC
Confidence 346789999999999997421 1 112 22222 356899999999765432221 1222333333322221
Q ss_pred cCCCcceeEEEEecCcchHHHHHHHHh-h-cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccC
Q 024287 91 PLPSCLHHRFVICGKKMKYQTLLSLIQ-S-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEM 168 (269)
Q Consensus 91 ~~~~~i~~~~~~~~~~~k~~~l~~ll~-~-~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~ 168 (269)
...+.+.+.... +...+.+.+. . ..+.+++|||+.+++.+++ ...++..+++.|.+.+.. ..+..+||+|
T Consensus 444 --r~~i~~~~~~~~---~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l--~~~~~~~~~~~L~~~~~~-~~v~~lHG~m 515 (681)
T PRK10917 444 --RKPITTVVIPDS---RRDEVYERIREEIAKGRQAYVVCPLIEESEKL--DLQSAEETYEELQEAFPE-LRVGLLHGRM 515 (681)
T ss_pred --CCCcEEEEeCcc---cHHHHHHHHHHHHHcCCcEEEEEcccccccch--hHHHHHHHHHHHHHHCCC-CcEEEEeCCC
Confidence 223444443322 2222323332 2 2467999999987655432 233456778888877654 7899999999
Q ss_pred ChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCC-CccccccccccCCCCCCCCCCeEEEEecC-c---
Q 024287 169 NFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPR-SAIDYLHRAGRTGRKPFSDEKWTVTSIIT-S--- 243 (269)
Q Consensus 169 ~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~-~~~~~~qr~GR~gR~~~~~~~g~~~~~~~-~--- 243 (269)
++.+|.+++++|++|+.+|||||+++++|+|+|++++||+++.|. ..+++.||.||+||.| ..|.|+++++ +
T Consensus 516 ~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g---~~g~~ill~~~~~~~ 592 (681)
T PRK10917 516 KPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGA---AQSYCVLLYKDPLSE 592 (681)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCC---CceEEEEEECCCCCh
Confidence 999999999999999999999999999999999999999999987 5788899999999998 8899999985 3
Q ss_pred hhHHHHHHHHHHh-cCccccccc
Q 024287 244 EELFVLQRYENEL-KFKSEELTL 265 (269)
Q Consensus 244 ~~~~~~~~~~~~~-~~~~~~~~~ 265 (269)
.....+..+++.. |+.+.+.++
T Consensus 593 ~~~~rl~~~~~~~dgf~iae~dl 615 (681)
T PRK10917 593 TARERLKIMRETNDGFVIAEKDL 615 (681)
T ss_pred hHHHHHHHHHHhcchHHHHHHhH
Confidence 3445555565533 555544443
No 52
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=2.8e-28 Score=230.19 Aligned_cols=231 Identities=17% Similarity=0.247 Sum_probs=161.6
Q ss_pred CchhhHHHHhCceecCcccEEEEeccc-cccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVD-FLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~-~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
||+|++.+.++.+ |++++++|||||| ++++.++....+..++.. .++.|+++||||++.. .+. ..+...
T Consensus 171 pG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~---rpdlKvILmSATid~e--~fs----~~F~~a 240 (1294)
T PRK11131 171 DGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR---RPDLKVIITSATIDPE--RFS----RHFNNA 240 (1294)
T ss_pred hHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc---CCCceEEEeeCCCCHH--HHH----HHcCCC
Confidence 7999999997764 9999999999999 577776554445554432 3578999999999742 232 223322
Q ss_pred ceeEEeecCcccCCCcceeEEEEecCc------chHHHHHHHHh---hcCCCceEEEeeccchhhhhcCCCCchHHHHHH
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFVICGKK------MKYQTLLSLIQ---SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDF 150 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~------~k~~~l~~ll~---~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~ 150 (269)
+ .+.+... . -.+.+.|...... +.+..+...+. ....+.+|||+++..+++. +++.
T Consensus 241 p--vI~V~Gr-~--~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~----------lae~ 305 (1294)
T PRK11131 241 P--IIEVSGR-T--YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRD----------TADA 305 (1294)
T ss_pred C--EEEEcCc-c--ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHH----------HHHH
Confidence 2 2333321 1 1255666654322 22333333322 2346889999999997544 6777
Q ss_pred HhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEec---------------CC---
Q 024287 151 LSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFD---------------LP--- 212 (269)
Q Consensus 151 l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~---------------~p--- 212 (269)
|.+.......+.++||+|++.+|..+++. .|..+|+|||+++++|+|+|++++||+++ +|
T Consensus 306 L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~ 383 (1294)
T PRK11131 306 LNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEP 383 (1294)
T ss_pred HHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeee
Confidence 77653334558899999999999998875 47789999999999999999999999986 33
Q ss_pred CCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHHHHHhcCccccccc
Q 024287 213 RSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYENELKFKSEELTL 265 (269)
Q Consensus 213 ~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
.|.++|.||.||+||. ..|.||.++++.+...+ ......+|...++
T Consensus 384 iSkasa~QRaGRAGR~----~~G~c~rLyte~d~~~~---~~~~~PEIlR~~L 429 (1294)
T PRK11131 384 ISQASANQRKGRCGRV----SEGICIRLYSEDDFLSR---PEFTDPEILRTNL 429 (1294)
T ss_pred cCHhhHhhhccccCCC----CCcEEEEeCCHHHHHhh---hcccCCccccCCH
Confidence 3557899999999999 48999999998876543 2333444444443
No 53
>PRK01172 ski2-like helicase; Provisional
Probab=99.96 E-value=4.5e-28 Score=223.68 Aligned_cols=227 Identities=18% Similarity=0.218 Sum_probs=146.2
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhc-cCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS-SCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~-~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
|+|+..++++....+++++++|+||+|.+.+.+ ....++.++..++ ...+.|++++|||+++..+ +.+ |...
T Consensus 119 pek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~-rg~~le~ll~~~~~~~~~~riI~lSATl~n~~~-la~-----wl~~ 191 (674)
T PRK01172 119 SEKADSLIHHDPYIINDVGLIVADEIHIIGDED-RGPTLETVLSSARYVNPDARILALSATVSNANE-LAQ-----WLNA 191 (674)
T ss_pred HHHHHHHHhCChhHHhhcCEEEEecchhccCCC-ccHHHHHHHHHHHhcCcCCcEEEEeCccCCHHH-HHH-----HhCC
Confidence 688888898888889999999999999876554 3355666655432 2367899999999987532 322 2211
Q ss_pred ceeEEeecCcccCCCcceeEEE-----EecCcc-hHHHHHHHHhh--cCCCceEEEeeccchhhhhcCCCCchH------
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFV-----ICGKKM-KYQTLLSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTT------ 145 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~-k~~~l~~ll~~--~~~~~~lIF~~s~~~~~~~~~~~~~~~------ 145 (269)
...... ..+ ..+..... ..+... ....+..++.. ..+++++|||++++.|+.+|..+....
T Consensus 192 ~~~~~~---~r~--vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~ 266 (674)
T PRK01172 192 SLIKSN---FRP--VPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDF 266 (674)
T ss_pred CccCCC---CCC--CCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccc
Confidence 111100 011 11111110 111111 11112333332 246899999999999887643221100
Q ss_pred --------HHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecC------
Q 024287 146 --------LLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDL------ 211 (269)
Q Consensus 146 --------~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~------ 211 (269)
.....|.+.. ...+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|+..+|| .+.
T Consensus 267 ~~~~~~~~~~~~~L~~~l--~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~ 343 (674)
T PRK01172 267 KVSSENNNVYDDSLNEML--PHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNG 343 (674)
T ss_pred cccccccccccHHHHHHH--hcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCC
Confidence 0001111111 12588999999999999999999999999999999999999999865555 332
Q ss_pred ---CCCccccccccccCCCCCCCCCCeEEEEecCc
Q 024287 212 ---PRSAIDYLHRAGRTGRKPFSDEKWTVTSIITS 243 (269)
Q Consensus 212 ---p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~ 243 (269)
|.+..+|.||+||+||.|.+ ..|.++.++..
T Consensus 344 ~~~~~s~~~~~Qm~GRAGR~g~d-~~g~~~i~~~~ 377 (674)
T PRK01172 344 GIRYLSNMEIKQMIGRAGRPGYD-QYGIGYIYAAS 377 (674)
T ss_pred CceeCCHHHHHHHhhcCCCCCCC-CcceEEEEecC
Confidence 45778899999999999865 56777766553
No 54
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.95 E-value=1.5e-27 Score=217.51 Aligned_cols=189 Identities=15% Similarity=0.106 Sum_probs=135.5
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhh--cc-CCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCccc
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASY--SS-CNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKP 91 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~--~~-~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 91 (269)
+++++++|+|||| ++.+ +...+..|+..+ +. ..+.|+++||||+|..+..+...+.. +...+.+.....
T Consensus 169 L~~v~~LVLDEAD--Ld~g-F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~-----~p~~i~V~~~~l 240 (844)
T TIGR02621 169 LGQDALIVHDEAH--LEPA-FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA-----EDYKHPVLKKRL 240 (844)
T ss_pred hccceEEEEehhh--hccc-cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc-----CCceeecccccc
Confidence 8999999999999 4566 558888998864 21 12379999999999876655433321 222333333333
Q ss_pred CCCcceeEEEEecCcchHHHHHHHH---hhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccC
Q 024287 92 LPSCLHHRFVICGKKMKYQTLLSLI---QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEM 168 (269)
Q Consensus 92 ~~~~i~~~~~~~~~~~k~~~l~~ll---~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~ 168 (269)
....+.++ +.++.+.|...+...+ ....++++||||||++.|+. +++.|.+. ++ ..+||+|
T Consensus 241 ~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~----------L~~~L~~~---g~--~lLHG~m 304 (844)
T TIGR02621 241 AAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRK----------VFAKLPKE---KF--ELLTGTL 304 (844)
T ss_pred cccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHH----------HHHHHHhc---CC--eEeeCCC
Confidence 34445553 4444444444333322 12346789999999997555 77777654 32 7999999
Q ss_pred ChhHHH-----HHHHHHhc----CC-------ccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCC
Q 024287 169 NFNSRA-----ASLLEVRQ----GG-------GYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230 (269)
Q Consensus 169 ~~~~r~-----~~~~~f~~----~~-------~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~ 230 (269)
++.+|. .+++.|++ |+ .+|||||+++++|+|++. ++||++..| .++|+||+||+||.|.
T Consensus 305 ~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~ 379 (844)
T TIGR02621 305 RGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGE 379 (844)
T ss_pred CHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCC
Confidence 999999 78899987 44 679999999999999987 888887766 6899999999999984
No 55
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.95 E-value=2.2e-27 Score=216.62 Aligned_cols=233 Identities=17% Similarity=0.168 Sum_probs=154.3
Q ss_pred CceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcc
Q 024287 11 HIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIK 90 (269)
Q Consensus 11 ~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (269)
+.+.+++++++|+||+|++.. . .+.. +.........+++++||||..+....+. .+...+...+...+..
T Consensus 351 ~~~~~~~l~lvVIDEaH~fg~-~-qr~~---l~~~~~~~~~~~~l~~SATp~prtl~l~-----~~~~l~~~~i~~~p~~ 420 (630)
T TIGR00643 351 EKVEFKRLALVIIDEQHRFGV-E-QRKK---LREKGQGGFTPHVLVMSATPIPRTLALT-----VYGDLDTSIIDELPPG 420 (630)
T ss_pred ccccccccceEEEechhhccH-H-HHHH---HHHhcccCCCCCEEEEeCCCCcHHHHHH-----hcCCcceeeeccCCCC
Confidence 346789999999999997421 1 2222 2222211136899999999755422111 1111222222221111
Q ss_pred cCCCcceeEEEEecCcchHHHHHHHHhh--cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccC
Q 024287 91 PLPSCLHHRFVICGKKMKYQTLLSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEM 168 (269)
Q Consensus 91 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~ 168 (269)
...+...+.. ...+ ..+...+.. ..+.+++|||+..+..+++ ...++..+++.|.+.+ .+..+..+||+|
T Consensus 421 --r~~i~~~~~~--~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~--~~~~a~~~~~~L~~~~-~~~~v~~lHG~m 492 (630)
T TIGR00643 421 --RKPITTVLIK--HDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKL--DLKAAEALYERLKKAF-PKYNVGLLHGRM 492 (630)
T ss_pred --CCceEEEEeC--cchH-HHHHHHHHHHHHhCCcEEEEEccccccccc--hHHHHHHHHHHHHhhC-CCCcEEEEeCCC
Confidence 1234443332 2222 333433432 2467999999998765543 2334566777787766 457899999999
Q ss_pred ChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCC-CccccccccccCCCCCCCCCCeEEEEec-C---c
Q 024287 169 NFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPR-SAIDYLHRAGRTGRKPFSDEKWTVTSII-T---S 243 (269)
Q Consensus 169 ~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~-~~~~~~qr~GR~gR~~~~~~~g~~~~~~-~---~ 243 (269)
++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|. +.++|.||.||+||.| ..|.|++++ + +
T Consensus 493 ~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g---~~g~~il~~~~~~~~ 569 (630)
T TIGR00643 493 KSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGD---HQSYCLLVYKNPKSE 569 (630)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCC---CCcEEEEEECCCCCH
Confidence 999999999999999999999999999999999999999999986 6788899999999998 889999998 2 3
Q ss_pred hhHHHHHHHHHHh-cCcccccc
Q 024287 244 EELFVLQRYENEL-KFKSEELT 264 (269)
Q Consensus 244 ~~~~~~~~~~~~~-~~~~~~~~ 264 (269)
.+...++.+++.. |+.+.+..
T Consensus 570 ~~~~rl~~~~~~~dgf~iae~d 591 (630)
T TIGR00643 570 SAKKRLRVMADTLDGFVIAEED 591 (630)
T ss_pred HHHHHHHHHHhhcccHHHHHHH
Confidence 3333444444433 44444433
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.95 E-value=1.5e-27 Score=205.23 Aligned_cols=202 Identities=19% Similarity=0.252 Sum_probs=137.2
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCCCccee
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHH 98 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 98 (269)
+++|+||+|.+.+.+ ...+..++..++ ..+.|+++||||+|+.+..+.. ..... ....... .........+
T Consensus 126 ~~iViDE~h~~~~~~--~~~l~~~l~~l~-~~~~~~i~~SATlp~~l~~~~~----~~~~~-~~~~~~~-~~~~~~~~~~ 196 (358)
T TIGR01587 126 SLLIFDEVHFYDEYT--LALILAVLEVLK-DNDVPILLMSATLPKFLKEYAE----KIGYV-EFNEPLD-LKEERRFERH 196 (358)
T ss_pred CEEEEeCCCCCCHHH--HHHHHHHHHHHH-HcCCCEEEEecCchHHHHHHHh----cCCCc-ccccCCC-Cccccccccc
Confidence 799999999887654 233666666554 4678999999999965433221 11110 0000000 0000011123
Q ss_pred EEEEec--CcchHHHHHHHHhhc-CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHH
Q 024287 99 RFVICG--KKMKYQTLLSLIQSD-APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175 (269)
Q Consensus 99 ~~~~~~--~~~k~~~l~~ll~~~-~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~ 175 (269)
.+..+. ...+...+..+++.. .+++++|||++++.|+. +++.|.+.... ..+..+||++++.+|.+
T Consensus 197 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~----------~~~~L~~~~~~-~~~~~~h~~~~~~~r~~ 265 (358)
T TIGR01587 197 RFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQE----------FYQQLKENAPE-EEIMLLHSRFTEKDRAK 265 (358)
T ss_pred cceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHH----------HHHHHHhhcCC-CeEEEEECCCCHHHHHH
Confidence 332222 234566666666543 46899999999997544 77777765332 36899999999999976
Q ss_pred ----HHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCC-CCeEEEEecCc
Q 024287 176 ----SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSD-EKWTVTSIITS 243 (269)
Q Consensus 176 ----~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~-~~g~~~~~~~~ 243 (269)
+++.|++|+.++||||+++++|+|+| +++||++..| +++|+||+||+||.|..+ ..|.++.+...
T Consensus 266 ~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 266 KEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred HHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 48899999999999999999999996 7888888766 789999999999998543 24577776654
No 57
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.95 E-value=1.1e-26 Score=221.22 Aligned_cols=214 Identities=11% Similarity=0.072 Sum_probs=149.7
Q ss_pred CceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcc
Q 024287 11 HIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIK 90 (269)
Q Consensus 11 ~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (269)
+.+.+++++++||||+|++ |. .. .+.+..++ .+.|+++||||+++....+... ...++..+...+..
T Consensus 716 ~~v~~~~L~lLVIDEahrf---G~--~~-~e~lk~l~--~~~qvLl~SATpiprtl~l~~~-----gl~d~~~I~~~p~~ 782 (1147)
T PRK10689 716 SDVKWKDLGLLIVDEEHRF---GV--RH-KERIKAMR--ADVDILTLTATPIPRTLNMAMS-----GMRDLSIIATPPAR 782 (1147)
T ss_pred CCCCHhhCCEEEEechhhc---ch--hH-HHHHHhcC--CCCcEEEEcCCCCHHHHHHHHh-----hCCCcEEEecCCCC
Confidence 5567899999999999985 31 12 23344443 6899999999987654433221 12344555443332
Q ss_pred cCCCcceeEEEEecCc-chHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCC
Q 024287 91 PLPSCLHHRFVICGKK-MKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMN 169 (269)
Q Consensus 91 ~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~ 169 (269)
...+.+.+...... .+...+.++. .+++++||||+++.+ ..+++.|.+.++ +..+..+||+|+
T Consensus 783 --r~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~n~i~~i----------e~la~~L~~~~p-~~~v~~lHG~m~ 846 (1147)
T PRK10689 783 --RLAVKTFVREYDSLVVREAILREIL---RGGQVYYLYNDVENI----------QKAAERLAELVP-EARIAIGHGQMR 846 (1147)
T ss_pred --CCCceEEEEecCcHHHHHHHHHHHh---cCCeEEEEECCHHHH----------HHHHHHHHHhCC-CCcEEEEeCCCC
Confidence 12344444433222 1222222322 357999999998864 447777877665 368999999999
Q ss_pred hhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCC-CCccccccccccCCCCCCCCCCeEEEEecCc-----
Q 024287 170 FNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLP-RSAIDYLHRAGRTGRKPFSDEKWTVTSIITS----- 243 (269)
Q Consensus 170 ~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p-~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~----- 243 (269)
+.+|.+++++|++|+.+|||||+++++|+|+|++++||..+.. .+..+|+||+||+||.| ..|.|++++..
T Consensus 847 q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g---~~g~a~ll~~~~~~~~ 923 (1147)
T PRK10689 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH---HQAYAWLLTPHPKAMT 923 (1147)
T ss_pred HHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCC---CceEEEEEeCCCcccC
Confidence 9999999999999999999999999999999999999954432 34567999999999998 88999988743
Q ss_pred -hhHHHHHHHHHHh
Q 024287 244 -EELFVLQRYENEL 256 (269)
Q Consensus 244 -~~~~~~~~~~~~~ 256 (269)
.....++.+++..
T Consensus 924 ~~~~~rl~~~~~~~ 937 (1147)
T PRK10689 924 TDAQKRLEAIASLE 937 (1147)
T ss_pred HHHHHHHHHHHHhc
Confidence 3345555555543
No 58
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.95 E-value=9.1e-27 Score=211.47 Aligned_cols=243 Identities=19% Similarity=0.195 Sum_probs=167.7
Q ss_pred chhhHHHHhCce--ecCcccEEEEeccccccCC--chhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcc
Q 024287 2 GSLCQLIEKHIF--KLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWT 77 (269)
Q Consensus 2 grl~~~l~~~~~--~l~~~~~lViDE~~~l~~~--~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~ 77 (269)
.-|--++-.+++ .|++++++|+||+|.+... |.++..-.+-+..+. .+.|.+++|||..+..+ +.+. +.
T Consensus 132 EsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~--~~~qRIGLSATV~~~~~-varf----L~ 204 (814)
T COG1201 132 ESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELA--GDFQRIGLSATVGPPEE-VAKF----LV 204 (814)
T ss_pred hHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhC--cccEEEeehhccCCHHH-HHHH----hc
Confidence 334334444333 6899999999999988755 444444444444443 28999999999986643 2221 11
Q ss_pred cC--ceeEEeecCcccCCCcceeEEEEec---------CcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHH
Q 024287 78 KS--DVVHVHVNAIKPLPSCLHHRFVICG---------KKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTL 146 (269)
Q Consensus 78 ~~--~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~ 146 (269)
+. ....+.+.... .......... ....+..+.++++++ ..++||+||+..||.
T Consensus 205 g~~~~~~Iv~~~~~k----~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~NTR~~aE~---------- 268 (814)
T COG1201 205 GFGDPCEIVDVSAAK----KLEIKVISPVEDLIYDEELWAALYERIAELVKKH--RTTLIFTNTRSGAER---------- 268 (814)
T ss_pred CCCCceEEEEcccCC----cceEEEEecCCccccccchhHHHHHHHHHHHhhc--CcEEEEEeChHHHHH----------
Confidence 12 22222332222 1222222211 123556666666665 489999999998766
Q ss_pred HHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCC
Q 024287 147 LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTG 226 (269)
Q Consensus 147 ~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~g 226 (269)
+...|.+.+. ..+..|||+++..+|..++++|++|+.+++|||+.++.|||+.+++.|||+..|.+.+.++||+||+|
T Consensus 269 l~~~L~~~~~--~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsg 346 (814)
T COG1201 269 LAFRLKKLGP--DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAG 346 (814)
T ss_pred HHHHHHHhcC--CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccc
Confidence 6677776643 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEecCchhHHHHHHHHHHhcCccccccccccC
Q 024287 227 RKPFSDEKWTVTSIITSEELFVLQRYENELKFKSEELTLQTQC 269 (269)
Q Consensus 227 R~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (269)
+.-..-.+|.++..-..+=.+...-....+.-.++.++++.+|
T Consensus 347 Hr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~ 389 (814)
T COG1201 347 HRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNP 389 (814)
T ss_pred cccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcc
Confidence 8864435665444332233355556666667777766665544
No 59
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=2.1e-25 Score=212.94 Aligned_cols=185 Identities=17% Similarity=0.254 Sum_probs=139.2
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCC-----------chhhhHHHHHHhhhcc---------------------
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNS-----------SKQVSSLKKLLASYSS--------------------- 48 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~-----------~~~~~~i~~i~~~~~~--------------------- 48 (269)
||||.+++. .+..++++++|+||||+++++ |+....+..++..++.
T Consensus 187 p~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~ 264 (1176)
T PRK09401 187 SQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAEL 264 (1176)
T ss_pred HHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhc
Confidence 789998887 566778999999999999973 4323456666655432
Q ss_pred -CCCccEEEEeccCCch-hhHHHHHHhhhcccCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEE
Q 024287 49 -CNNRQTVFASASIPQH-RRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGII 126 (269)
Q Consensus 49 -~~~~q~i~~SATl~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lI 126 (269)
..+.|++++|||+++. +... +. .+...+.+........++.+.|+.++ ++...+..+++... .++||
T Consensus 265 ~~~~~q~ilfSAT~~~~~~~~~---l~-----~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LI 333 (1176)
T PRK09401 265 KDKKGVLVVSSATGRPRGNRVK---LF-----RELLGFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLI 333 (1176)
T ss_pred ccCCceEEEEeCCCCccchHHH---Hh-----hccceEEecCcccccCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEE
Confidence 1268999999999874 3211 11 12223445545556678888888765 57777888887654 68999
Q ss_pred EeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEE----eccccccCCCCC
Q 024287 127 FVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVS----TDIAARGIDLPE 202 (269)
Q Consensus 127 F~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~----T~~~~~Gidi~~ 202 (269)
||+++...+. +..++++|.+. ++.+..+||+| + ..+++|++|+.++||| |++++||+|+|+
T Consensus 334 Fv~t~~~~~~-------ae~l~~~L~~~---gi~v~~~hg~l---~--~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~ 398 (1176)
T PRK09401 334 FVPSDKGKEY-------AEELAEYLEDL---GINAELAISGF---E--RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPE 398 (1176)
T ss_pred EEecccChHH-------HHHHHHHHHHC---CCcEEEEeCcH---H--HHHHHHHCCCCCEEEEecCCCCceeecCCCCc
Confidence 9999886333 45688888887 78999999999 2 2359999999999999 689999999999
Q ss_pred -CCeEEEecCCC
Q 024287 203 -TTHIYNFDLPR 213 (269)
Q Consensus 203 -~~~Vi~~~~p~ 213 (269)
+++|||||+|.
T Consensus 399 ~IryVI~y~vP~ 410 (1176)
T PRK09401 399 RIRYAIFYGVPK 410 (1176)
T ss_pred ceeEEEEeCCCC
Confidence 89999999886
No 60
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.94 E-value=2e-26 Score=197.08 Aligned_cols=213 Identities=17% Similarity=0.269 Sum_probs=160.7
Q ss_pred hHHHHhCceecCcccEEEEeccccccCC--chhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCcee
Q 024287 5 CQLIEKHIFKLESVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVV 82 (269)
Q Consensus 5 ~~~l~~~~~~l~~~~~lViDE~~~l~~~--~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~ 82 (269)
..+|+.| -++.++..|||||+|.+-+. |..+.-+..-++.+. +.+|++.+|||+.++.+.. +.+. .+.+
T Consensus 327 D~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~--~~AQ~i~LSATVgNp~elA-~~l~-----a~lV 397 (830)
T COG1202 327 DYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF--PGAQFIYLSATVGNPEELA-KKLG-----AKLV 397 (830)
T ss_pred HHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHHHHHhC--CCCeEEEEEeecCChHHHH-HHhC-----CeeE
Confidence 4567777 68999999999999955443 344444445555554 6899999999998886632 2221 1222
Q ss_pred EEeecCcccCCCcceeEEEEec-CcchHHHHHHHHhhc--------CCCceEEEeeccchhhhhcCCCCchHHHHHHHhh
Q 024287 83 HVHVNAIKPLPSCLHHRFVICG-KKMKYQTLLSLIQSD--------APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSN 153 (269)
Q Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~--------~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~ 153 (269)
.. ...|..+..+.+.+. ..+|.+.+..+.+.. -.+|+|||++|+..|+. ++.+|..
T Consensus 398 ~y-----~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~----------lA~~L~~ 462 (830)
T COG1202 398 LY-----DERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHE----------LADALTG 462 (830)
T ss_pred ee-----cCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHH----------HHHHhhc
Confidence 21 222444655555554 678999998888632 25899999999998655 7888877
Q ss_pred hcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEE---ecCC-CCccccccccccCCCCC
Q 024287 154 SYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYN---FDLP-RSAIDYLHRAGRTGRKP 229 (269)
Q Consensus 154 ~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~---~~~p-~~~~~~~qr~GR~gR~~ 229 (269)
. ++++.+||++++..+|..+...|.++++.++|+|-+++.|+|+|...+|+. .+.. -++.+|.||+||+||.+
T Consensus 463 k---G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~ 539 (830)
T COG1202 463 K---GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPD 539 (830)
T ss_pred C---CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCC
Confidence 6 799999999999999999999999999999999999999999998665542 1111 37899999999999997
Q ss_pred CCCCCeEEEEecCchh
Q 024287 230 FSDEKWTVTSIITSEE 245 (269)
Q Consensus 230 ~~~~~g~~~~~~~~~~ 245 (269)
. +..|.+|.++.++.
T Consensus 540 y-HdrGkVyllvepg~ 554 (830)
T COG1202 540 Y-HDRGKVYLLVEPGK 554 (830)
T ss_pred c-ccCceEEEEecCCh
Confidence 4 48999999998753
No 61
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=9.2e-26 Score=213.90 Aligned_cols=217 Identities=16% Similarity=0.237 Sum_probs=154.1
Q ss_pred CchhhHHHHhCceecCcccEEEEeccc-cccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVD-FLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~-~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
||+|++.+.+.. .|+++++|||||+| +.++.++....+..++.. .++.|+++||||+.. +.+.+. +...
T Consensus 164 dGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~---rpdLKlIlmSATld~--~~fa~~----F~~a 233 (1283)
T TIGR01967 164 DGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR---RPDLKIIITSATIDP--ERFSRH----FNNA 233 (1283)
T ss_pred ccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh---CCCCeEEEEeCCcCH--HHHHHH----hcCC
Confidence 799999998866 59999999999999 577777554556666543 257899999999964 233332 2222
Q ss_pred ceeEEeecCcccCCCcceeEEEEecC------cchHHHHHHHHhh---cCCCceEEEeeccchhhhhcCCCCchHHHHHH
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFVICGK------KMKYQTLLSLIQS---DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDF 150 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~ll~~---~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~ 150 (269)
+ .+.+.. ... .+...|..... .++...+...+.. ..++.+|||+++..+++. +.+.
T Consensus 234 p--vI~V~G-r~~--PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~----------l~~~ 298 (1283)
T TIGR01967 234 P--IIEVSG-RTY--PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRD----------AAEI 298 (1283)
T ss_pred C--EEEECC-Ccc--cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHH----------HHHH
Confidence 2 233321 111 23444443321 1233334333332 245899999999987544 6667
Q ss_pred HhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCC------------------
Q 024287 151 LSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLP------------------ 212 (269)
Q Consensus 151 l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p------------------ 212 (269)
|.+....+..+.++||+|++.+|..+++.+ +..+|+|||+++++|+|+|++++||+++++
T Consensus 299 L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ 376 (1283)
T TIGR01967 299 LRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEP 376 (1283)
T ss_pred HHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCcc
Confidence 765543456789999999999999885543 236899999999999999999999999854
Q ss_pred CCccccccccccCCCCCCCCCCeEEEEecCchhHHH
Q 024287 213 RSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFV 248 (269)
Q Consensus 213 ~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~ 248 (269)
.|.++|.||.||+||.+ .|.||.++++.+...
T Consensus 377 ISkasa~QRaGRAGR~~----~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 377 ISQASANQRKGRCGRVA----PGICIRLYSEEDFNS 408 (1283)
T ss_pred CCHHHHHHHhhhhCCCC----CceEEEecCHHHHHh
Confidence 35679999999999995 899999999877654
No 62
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.94 E-value=8.1e-26 Score=187.70 Aligned_cols=223 Identities=21% Similarity=0.303 Sum_probs=169.0
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhc----cCCCccEEEEeccCCch-hhHHHHHHhhh
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS----SCNNRQTVFASASIPQH-RRFLHNCIQQK 75 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~----~~~~~q~i~~SATl~~~-~~~l~~~~~~~ 75 (269)
||||.+++.+|.+.++++.++|+||+|.++..+ +-..|..+..+++ .+...|.+..|||+.-- +..+...++
T Consensus 347 pgRl~~~is~g~~~lt~crFlvlDead~lL~qg-y~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervm-- 423 (725)
T KOG0349|consen 347 PGRLLQPISKGLVTLTHCRFLVLDEADLLLGQG-YDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVM-- 423 (725)
T ss_pred chhhhhhhhccceeeeeeEEEEecchhhhhhcc-cHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhc--
Confidence 899999999999999999999999999888877 4477888887776 34689999999997532 221211111
Q ss_pred cccCceeEEeecCcccCCCcceeEEEEecC------------------------------cchHHHHHHHH---------
Q 024287 76 WTKSDVVHVHVNAIKPLPSCLHHRFVICGK------------------------------KMKYQTLLSLI--------- 116 (269)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------------------------~~k~~~l~~ll--------- 116 (269)
.=+..+++......+..+.+....+.. .+....-..++
T Consensus 424 ---hfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai 500 (725)
T KOG0349|consen 424 ---HFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAI 500 (725)
T ss_pred ---cCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhh
Confidence 112344444444444444444332221 11112222222
Q ss_pred hhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccc
Q 024287 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAAR 196 (269)
Q Consensus 117 ~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~ 196 (269)
++..-++.||||.++.. +..+..++.+.....+.+.++||+..+.+|.+.++.|+.+..+.|||||+++|
T Consensus 501 ~~h~mdkaiifcrtk~d----------cDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaar 570 (725)
T KOG0349|consen 501 RRHAMDKAIIFCRTKQD----------CDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAAR 570 (725)
T ss_pred hhhccCceEEEEecccc----------chHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhc
Confidence 23345799999999986 55588888877777789999999999999999999999999999999999999
Q ss_pred cCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecC
Q 024287 197 GIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIIT 242 (269)
Q Consensus 197 Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~ 242 (269)
|+||..+.++||.-+|.+...|+||+||+||.. +-|.+++++.
T Consensus 571 gldi~g~p~~invtlpd~k~nyvhrigrvgrae---rmglaislva 613 (725)
T KOG0349|consen 571 GLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE---RMGLAISLVA 613 (725)
T ss_pred cccccCCceEEEEecCcccchhhhhhhccchhh---hcceeEEEee
Confidence 999999999999999999999999999999997 6788887653
No 63
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.8e-24 Score=183.13 Aligned_cols=123 Identities=24% Similarity=0.398 Sum_probs=101.2
Q ss_pred hHHHHHHHHhh----cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEE-------ecccCChhHHHHH
Q 024287 108 KYQTLLSLIQS----DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLL-------LEEEMNFNSRAAS 176 (269)
Q Consensus 108 k~~~l~~ll~~----~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-------~h~~~~~~~r~~~ 176 (269)
|++.+.+++++ ....++|||++.|+.|+. +.++|.+.+..- .+.+ ...||++.++.++
T Consensus 349 Kl~~l~eilke~~~k~~~~RvIVFT~yRdTae~----------i~~~L~~~~~~~-~~rFiGQa~r~~~~GMsQkeQ~ei 417 (542)
T COG1111 349 KLEKLREILKEQLEKNGDSRVIVFTEYRDTAEE----------IVNFLKKIGIKA-RVRFIGQASREGDKGMSQKEQKEI 417 (542)
T ss_pred cHHHHHHHHHHHHhcCCCceEEEEehhHhHHHH----------HHHHHHhcCCcc-eeEEeeccccccccccCHHHHHHH
Confidence 44455555542 345699999999997555 888888874421 1122 2357999999999
Q ss_pred HHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchh
Q 024287 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEE 245 (269)
Q Consensus 177 ~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~ 245 (269)
++.|+.|+.++||||++.++|+|+|+++.||.|++-.|+..++||.||+||. +.|.++.++++++
T Consensus 418 I~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~----r~Grv~vLvt~gt 482 (542)
T COG1111 418 IDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK----RKGRVVVLVTEGT 482 (542)
T ss_pred HHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC----CCCeEEEEEecCc
Confidence 9999999999999999999999999999999999999999999999999998 7899999998763
No 64
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.93 E-value=5.9e-25 Score=203.30 Aligned_cols=214 Identities=17% Similarity=0.140 Sum_probs=163.1
Q ss_pred ccEEEEeccccccCCc-hhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCCCcc
Q 024287 18 VQVLVIDEVDFLFNSS-KQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCL 96 (269)
Q Consensus 18 ~~~lViDE~~~l~~~~-~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (269)
+.++||||||+...|| ++++...++.......+..+++.+|||....+. .-+...+...++.. ....-.+.++
T Consensus 386 lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~---~DIi~~L~l~~~~~---~~~sfnR~NL 459 (941)
T KOG0351|consen 386 LALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVR---EDVIRSLGLRNPEL---FKSSFNRPNL 459 (941)
T ss_pred eEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHH---HHHHHHhCCCCcce---ecccCCCCCc
Confidence 7799999999999998 555666655543333456899999999976643 22334444444442 2222233445
Q ss_pred eeEEEEecCcchHHHHHHHHhh-cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHH
Q 024287 97 HHRFVICGKKMKYQTLLSLIQS-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA 175 (269)
Q Consensus 97 ~~~~~~~~~~~k~~~l~~ll~~-~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~ 175 (269)
...+..-........+...++. ...+.+||||.++.+|+ .+...|... +..+..||++|++++|..
T Consensus 460 ~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce----------~vs~~L~~~---~~~a~~YHAGl~~~~R~~ 526 (941)
T KOG0351|consen 460 KYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECE----------QVSAVLRSL---GKSAAFYHAGLPPKERET 526 (941)
T ss_pred eEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHH----------HHHHHHHHh---chhhHhhhcCCCHHHHHH
Confidence 4444443323333344444443 45678999999999754 477888877 578899999999999999
Q ss_pred HHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHHH
Q 024287 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYE 253 (269)
Q Consensus 176 ~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~~ 253 (269)
+-+.|..++++|+|+|=++++|||.|+|..||||.+|.+.+.|.|-+|||||.| ....|+.|+...|...+..+.
T Consensus 527 Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG---~~s~C~l~y~~~D~~~l~~ll 601 (941)
T KOG0351|consen 527 VQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDG---LPSSCVLLYGYADISELRRLL 601 (941)
T ss_pred HHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCC---CcceeEEecchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 788999999999887766554
No 65
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.93 E-value=6.5e-25 Score=201.31 Aligned_cols=229 Identities=22% Similarity=0.262 Sum_probs=155.8
Q ss_pred hhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhcc-CCCccEEEEeccCCchhhHHHHHHhhhcccCce
Q 024287 3 SLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSS-CNNRQTVFASASIPQHRRFLHNCIQQKWTKSDV 81 (269)
Q Consensus 3 rl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~-~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~ 81 (269)
++.+++++...++.++++||+||+|. +.+....+.++.++...+. ....|++.+|||+|+..+ +.+ |.+.+.
T Consensus 132 K~Dsl~R~~~~~~~~V~lvViDEiH~-l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~e-vA~-----wL~a~~ 204 (766)
T COG1204 132 KLDSLTRKRPSWIEEVDLVVIDEIHL-LGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEE-VAD-----WLNAKL 204 (766)
T ss_pred HhhHhhhcCcchhhcccEEEEeeeee-cCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHHH-HHH-----HhCCcc
Confidence 56788888888999999999999994 4444466888888876652 234899999999999754 322 222333
Q ss_pred eEEeecCcccCC-CcceeEEEEecCcc------hHHHHHHHHh-hc-CCCceEEEeeccchhhhhcCCCCc--------h
Q 024287 82 VHVHVNAIKPLP-SCLHHRFVICGKKM------KYQTLLSLIQ-SD-APESGIIFVGEQSEKSKKAGNAPS--------T 144 (269)
Q Consensus 82 ~~~~~~~~~~~~-~~i~~~~~~~~~~~------k~~~l~~ll~-~~-~~~~~lIF~~s~~~~~~~~~~~~~--------~ 144 (269)
....+.+..... ....+.+....... +.+....++. .. .+++++|||+|++.++.+|..++. -
T Consensus 205 ~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~ 284 (766)
T COG1204 205 VESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDD 284 (766)
T ss_pred cccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChh
Confidence 322333222211 12233333333222 2233333332 22 468999999999999987643331 0
Q ss_pred H---------HHH---------HHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeE
Q 024287 145 T---------LLV---------DFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHI 206 (269)
Q Consensus 145 ~---------~~~---------~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~V 206 (269)
. .+. +.|.+... ..+.+||++++..+|..+.+.|+.|.++||+||+.+++|+|+|.-.+|
T Consensus 285 ~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~--~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VI 362 (766)
T COG1204 285 EKIVLDEGASPILIPETPTSEDEELAELVL--RGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVI 362 (766)
T ss_pred hhhhccccccccccccccccchHHHHHHHH--hCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEE
Confidence 0 000 12222222 247889999999999999999999999999999999999999988887
Q ss_pred E----Eec-----CCCCccccccccccCCCCCCCCCCeEEEEec
Q 024287 207 Y----NFD-----LPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241 (269)
Q Consensus 207 i----~~~-----~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~ 241 (269)
| -|+ .+.+.-++.||+|||||+|.+ ..|-++.+.
T Consensus 363 Ik~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d-~~G~~~i~~ 405 (766)
T COG1204 363 IKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYD-DYGEAIILA 405 (766)
T ss_pred EeeeEEEcCCCCeEECchhhHhhccCcCCCCCcC-CCCcEEEEe
Confidence 7 355 566788999999999999987 555555555
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.91 E-value=1.7e-23 Score=186.78 Aligned_cols=209 Identities=16% Similarity=0.168 Sum_probs=138.5
Q ss_pred eecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEe-------
Q 024287 13 FKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVH------- 85 (269)
Q Consensus 13 ~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~------- 85 (269)
..+++++++|+||||++... .+..++..++ ...++++||||+++........ ...++ .-...+.
T Consensus 218 ~~~~~~~~iIvDEaH~~~~~-----~~~~il~~~~--~~~~~lGLTATp~~~~~~~~~~-~~~fG-~i~~~v~~~~li~~ 288 (501)
T PHA02558 218 EWFDQFGMVIVDECHLFTGK-----SLTSIITKLD--NCKFKFGLTGSLRDGKANILQY-VGLFG-DIFKPVTTSQLMEE 288 (501)
T ss_pred hhccccCEEEEEchhcccch-----hHHHHHHhhh--ccceEEEEeccCCCccccHHHH-HHhhC-CceEEecHHHHHhC
Confidence 35789999999999987643 3445555543 4678999999986542211100 00000 0000000
Q ss_pred ------------ecCcccCCCcc-----eeEE-EEecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchH
Q 024287 86 ------------VNAIKPLPSCL-----HHRF-VICGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTT 145 (269)
Q Consensus 86 ------------~~~~~~~~~~i-----~~~~-~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~ 145 (269)
..........+ ...+ .......+...+..++... .+.+++|||++.+. +.
T Consensus 289 g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h----------~~ 358 (501)
T PHA02558 289 GQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEH----------GK 358 (501)
T ss_pred CCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHH----------HH
Confidence 00000000000 0000 0112223444444444322 35788999988764 45
Q ss_pred HHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEe-ccccccCCCCCCCeEEEecCCCCcccccccccc
Q 024287 146 LLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVST-DIAARGIDLPETTHIYNFDLPRSAIDYLHRAGR 224 (269)
Q Consensus 146 ~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T-~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR 224 (269)
.+++.|.+. +.++..+||+|+..+|..+++.|++|+..+|||| +++++|+|+|++++||+++++.+...|+||+||
T Consensus 359 ~L~~~L~~~---g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR 435 (501)
T PHA02558 359 PLYEMLKKV---YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGR 435 (501)
T ss_pred HHHHHHHHc---CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhc
Confidence 577778775 6789999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred CCCCCCCCCCeEEEEecCc
Q 024287 225 TGRKPFSDEKWTVTSIITS 243 (269)
Q Consensus 225 ~gR~~~~~~~g~~~~~~~~ 243 (269)
++|.+.++....++.+++.
T Consensus 436 ~~R~~~~K~~~~i~D~vD~ 454 (501)
T PHA02558 436 VLRKHGSKSIATVWDIIDD 454 (501)
T ss_pred cccCCCCCceEEEEEeecc
Confidence 9999855445667767654
No 67
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.91 E-value=5.1e-23 Score=181.02 Aligned_cols=234 Identities=15% Similarity=0.135 Sum_probs=167.5
Q ss_pred HHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCC-CccEEEEeccC-CchhhHHHHHHhhhcccCceeEEe
Q 024287 8 IEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCN-NRQTVFASASI-PQHRRFLHNCIQQKWTKSDVVHVH 85 (269)
Q Consensus 8 l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~-~~q~i~~SATl-~~~~~~l~~~~~~~~~~~~~~~~~ 85 (269)
|....+.++++.++|+||-|+ +| ...=..+.++ +. .+.++.||||. |.++. +..+++-+...++
T Consensus 375 LiQd~V~F~~LgLVIiDEQHR---FG--V~QR~~L~~K---G~~~Ph~LvMTATPIPRTLA------lt~fgDldvS~Id 440 (677)
T COG1200 375 LIQDKVEFHNLGLVIIDEQHR---FG--VHQRLALREK---GEQNPHVLVMTATPIPRTLA------LTAFGDLDVSIID 440 (677)
T ss_pred hhhcceeecceeEEEEecccc---cc--HHHHHHHHHh---CCCCCcEEEEeCCCchHHHH------HHHhccccchhhc
Confidence 344567899999999999998 45 2333333333 34 68999999996 44332 2233333444443
Q ss_pred ecCcccCCCcceeEEEEecCcchHHHHHHHH-hhc-CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEE
Q 024287 86 VNAIKPLPSCLHHRFVICGKKMKYQTLLSLI-QSD-APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLL 163 (269)
Q Consensus 86 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll-~~~-~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~ 163 (269)
.-+.. ...|....+.. + +...+.+.+ .+. ++.|+-+.|+-+++-+++ .++++...++.|+..+ ++..+..
T Consensus 441 ElP~G--RkpI~T~~i~~--~-~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l--~l~~a~~~~~~L~~~~-~~~~vgL 512 (677)
T COG1200 441 ELPPG--RKPITTVVIPH--E-RRPEVYERIREEIAKGRQAYVVCPLIEESEKL--ELQAAEELYEELKSFL-PELKVGL 512 (677)
T ss_pred cCCCC--CCceEEEEecc--c-cHHHHHHHHHHHHHcCCEEEEEeccccccccc--hhhhHHHHHHHHHHHc-ccceeEE
Confidence 33333 23355655543 2 333333333 332 578999999999987754 3667888999999554 4578999
Q ss_pred ecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCC-CccccccccccCCCCCCCCCCeEEEEecC
Q 024287 164 LEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPR-SAIDYLHRAGRTGRKPFSDEKWTVTSIIT 242 (269)
Q Consensus 164 ~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~-~~~~~~qr~GR~gR~~~~~~~g~~~~~~~ 242 (269)
+||.|++.++++++++|++|+.+|||||.+.+.|||+|+++++|..+... ..++..|--||+||.+ ....|+.++.
T Consensus 513 ~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~---~qSyC~Ll~~ 589 (677)
T COG1200 513 VHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGD---LQSYCVLLYK 589 (677)
T ss_pred EecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCC---cceEEEEEeC
Confidence 99999999999999999999999999999999999999999999888654 6788899999999998 7889999987
Q ss_pred chh-H---HHHHHHHHHh-cCcccccccc
Q 024287 243 SEE-L---FVLQRYENEL-KFKSEELTLQ 266 (269)
Q Consensus 243 ~~~-~---~~~~~~~~~~-~~~~~~~~~~ 266 (269)
+.. . ..++.+.+.. |+.|.|.+++
T Consensus 590 ~~~~~~a~~RL~im~~t~DGF~IAE~DLk 618 (677)
T COG1200 590 PPLSEVAKQRLKIMRETTDGFVIAEEDLK 618 (677)
T ss_pred CCCChhHHHHHHHHHhcCCcceehhhhHh
Confidence 654 3 4444444444 6777666554
No 68
>PRK14701 reverse gyrase; Provisional
Probab=99.91 E-value=3.8e-23 Score=201.59 Aligned_cols=221 Identities=14% Similarity=0.153 Sum_probs=157.7
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCch----------hhhHHHH----HHh-------------------hh-
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSK----------QVSSLKK----LLA-------------------SY- 46 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~----------~~~~i~~----i~~-------------------~~- 46 (269)
||+|.+.+.... ..+++++|+||||++++++. +.+.+.. ++. .+
T Consensus 186 PgrL~~~~~~l~--~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~ 263 (1638)
T PRK14701 186 AQFLARNFPEMK--HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIE 263 (1638)
T ss_pred CchhHHhHHHHh--hCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhh
Confidence 889988776432 27899999999999987532 2233332 221 00
Q ss_pred ccCCCcc-EEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceE
Q 024287 47 SSCNNRQ-TVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGI 125 (269)
Q Consensus 47 ~~~~~~q-~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~l 125 (269)
..+...| ++++|||+++..... ..+ +++..+.+........++.+.|+.+....+ ..+.++++.. +.++|
T Consensus 264 ~~~~~~~~ll~~SAT~~~r~~~~-~l~------~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gI 334 (1638)
T PRK14701 264 KIGNKIGCLIVASATGKAKGDRV-KLY------RELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGL 334 (1638)
T ss_pred hcCCCccEEEEEecCCCchhHHH-HHh------hcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeE
Confidence 0123445 677999998642211 111 233446666666677788888887655544 5677888765 57899
Q ss_pred EEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEe----ccccccCCCC
Q 024287 126 IFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVST----DIAARGIDLP 201 (269)
Q Consensus 126 IF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T----~~~~~Gidi~ 201 (269)
|||++++.++. +..+++.|.+. ++.+..+||+ |...+++|++|+.+||||| ++++||+|+|
T Consensus 335 VF~~t~~~~e~-------ae~la~~L~~~---Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP 399 (1638)
T PRK14701 335 IFVPIDEGAEK-------AEEIEKYLLED---GFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLP 399 (1638)
T ss_pred EEEeccccchH-------HHHHHHHHHHC---CCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccC
Confidence 99999986544 46788888886 7899999995 8889999999999999999 4899999999
Q ss_pred C-CCeEEEecCCC---Ccccccccc-------------ccCCCCCCCCCCeEEEEecCchhHHHHH
Q 024287 202 E-TTHIYNFDLPR---SAIDYLHRA-------------GRTGRKPFSDEKWTVTSIITSEELFVLQ 250 (269)
Q Consensus 202 ~-~~~Vi~~~~p~---~~~~~~qr~-------------GR~gR~~~~~~~g~~~~~~~~~~~~~~~ 250 (269)
+ +++|||||+|. +.+.|.|-. ||+||.| ..+.++....+.+...++
T Consensus 400 ~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~~~~~~~~~~~~~~~~ 462 (1638)
T PRK14701 400 ERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG---IPIEGVLDVFPEDVEFLR 462 (1638)
T ss_pred CccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC---CcchhHHHhHHHHHHHHH
Confidence 9 99999999999 888777765 9999988 444444444445544443
No 69
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.90 E-value=1.3e-22 Score=189.35 Aligned_cols=125 Identities=17% Similarity=0.234 Sum_probs=104.0
Q ss_pred chHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcC--C
Q 024287 107 MKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQG--G 184 (269)
Q Consensus 107 ~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~--~ 184 (269)
.|.+.+.++++...+.|+||||++++. +..+.+.|.+. .++.+..+||+|+..+|.++++.|+++ .
T Consensus 479 ~Ki~~L~~~L~~~~~~KvLVF~~~~~t----------~~~L~~~L~~~--~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~ 546 (956)
T PRK04914 479 PRVEWLIDFLKSHRSEKVLVICAKAAT----------ALQLEQALRER--EGIRAAVFHEGMSIIERDRAAAYFADEEDG 546 (956)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCcHHH----------HHHHHHHHhhc--cCeeEEEEECCCCHHHHHHHHHHHhcCCCC
Confidence 366778888887778899999999986 44477777433 268899999999999999999999984 5
Q ss_pred ccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCch
Q 024287 185 GYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSE 244 (269)
Q Consensus 185 ~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~ 244 (269)
.+|||||+++++|+|++.+++||+||+|+++..|.||+||++|.|+. ..-.++.++.++
T Consensus 547 ~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~-~~V~i~~~~~~~ 605 (956)
T PRK04914 547 AQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQK-HDIQIHVPYLEG 605 (956)
T ss_pred ccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCC-ceEEEEEccCCC
Confidence 89999999999999999999999999999999999999999999943 222344444443
No 70
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.90 E-value=5.9e-22 Score=189.63 Aligned_cols=183 Identities=17% Similarity=0.253 Sum_probs=128.5
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCC-----------chhhhHHHHHHh----------------------hhc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNS-----------SKQVSSLKKLLA----------------------SYS 47 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~-----------~~~~~~i~~i~~----------------------~~~ 47 (269)
||||.+++..-. . +++++|+||||+|+++ |+.-..++.++. ..+
T Consensus 186 p~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (1171)
T TIGR01054 186 TMFLSKNYDELG--P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIP 262 (1171)
T ss_pred HHHHHHHHHHhc--C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhh
Confidence 788888776522 2 8999999999999984 432223444322 222
Q ss_pred cCCCcc--EEEEecc-CCchhhHHHHHHhhhcccCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCce
Q 024287 48 SCNNRQ--TVFASAS-IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESG 124 (269)
Q Consensus 48 ~~~~~q--~i~~SAT-l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 124 (269)
.+.| ++++||| .|..... .+. ++...+.+........++.+.+..... +...+.++++.. +.++
T Consensus 263 --~~~q~~li~~SAT~~p~~~~~---~l~-----r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~ 329 (1171)
T TIGR01054 263 --GKKRGCLIVSSATGRPRGKRA---KLF-----RELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL-GTGG 329 (1171)
T ss_pred --hccCcEEEEEeCCCCccccHH---HHc-----ccccceEecCccccccceEEEEEeccc--HHHHHHHHHHHc-CCCE
Confidence 3344 6778999 4554331 111 223344555555566778888775543 345677777664 4789
Q ss_pred EEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEe----ccccccCCC
Q 024287 125 IIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVST----DIAARGIDL 200 (269)
Q Consensus 125 lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T----~~~~~Gidi 200 (269)
||||+++...+. +..+++.|.+. ++.+..+||+|+ +++++.|++|+.++|||| ++++||+|+
T Consensus 330 IVFv~t~~~~~~-------a~~l~~~L~~~---g~~a~~lhg~~~----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDi 395 (1171)
T TIGR01054 330 IVYVSIDYGKEK-------AEEIAEFLENH---GVKAVAYHATKP----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDL 395 (1171)
T ss_pred EEEEeccccHHH-------HHHHHHHHHhC---CceEEEEeCCCC----HHHHHHHHcCCCCEEEEeccccCcccccCCC
Confidence 999999822222 56688888876 788999999997 368999999999999995 899999999
Q ss_pred CC-CCeEEEecCCC
Q 024287 201 PE-TTHIYNFDLPR 213 (269)
Q Consensus 201 ~~-~~~Vi~~~~p~ 213 (269)
|+ +++|||||+|.
T Consensus 396 p~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 396 PERVRYAVFLGVPK 409 (1171)
T ss_pred CccccEEEEECCCC
Confidence 99 79999988763
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.89 E-value=2.9e-22 Score=171.53 Aligned_cols=187 Identities=18% Similarity=0.218 Sum_probs=117.7
Q ss_pred cCcccEEEEeccccccCCch-hhh---HHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecC--
Q 024287 15 LESVQVLVIDEVDFLFNSSK-QVS---SLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNA-- 88 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~-~~~---~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~-- 88 (269)
+.+++++||||+|.+-.++. .+. ....++.... ...+++++|||+++.+....... ...+.+...+....
T Consensus 143 ~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~i~lSAT~~~~~~~~l~~~--~~~~~~~~~v~g~~~~ 218 (357)
T TIGR03158 143 YTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFE--CRRKFVFLSATPDPALILRLQNA--KQAGVKIAPIDGEKYQ 218 (357)
T ss_pred hcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhh--cCCcEEEEecCCCHHHHHHHHhc--cccCceeeeecCcccc
Confidence 68999999999997654331 111 2233333322 45799999999987644322111 00111222211110
Q ss_pred ---------c------ccCCCcceeEEEEecCcchHHHHHHHHh-------hcCCCceEEEeeccchhhhhcCCCCchHH
Q 024287 89 ---------I------KPLPSCLHHRFVICGKKMKYQTLLSLIQ-------SDAPESGIIFVGEQSEKSKKAGNAPSTTL 146 (269)
Q Consensus 89 ---------~------~~~~~~i~~~~~~~~~~~k~~~l~~ll~-------~~~~~~~lIF~~s~~~~~~~~~~~~~~~~ 146 (269)
. .+....+.+.+.. ....+...+..+++ ...+++++|||||++.|+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~---------- 287 (357)
T TIGR03158 219 FPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNR---------- 287 (357)
T ss_pred cCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHH----------
Confidence 0 0011245555544 33334433333332 2345799999999997544
Q ss_pred HHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCC
Q 024287 147 LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTG 226 (269)
Q Consensus 147 ~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~g 226 (269)
+++.|.+.. .+..+..+||.+++.+|.+. ++..+||||+++++|+|+|.+ +|| ++ |.+.++|+||+||+|
T Consensus 288 l~~~L~~~~-~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 288 LSDLLQQQG-LGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHHhhhC-CCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 777777541 13467889999999988654 478899999999999999986 555 55 899999999999997
No 72
>PRK13766 Hef nuclease; Provisional
Probab=99.89 E-value=6.2e-22 Score=185.99 Aligned_cols=121 Identities=24% Similarity=0.371 Sum_probs=102.4
Q ss_pred chHHHHHHHHhh----cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEeccc--------CChhHHH
Q 024287 107 MKYQTLLSLIQS----DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEE--------MNFNSRA 174 (269)
Q Consensus 107 ~k~~~l~~ll~~----~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~--------~~~~~r~ 174 (269)
.|...+.++++. ..+.++||||++++.| ..+.+.|... ++.+..+||. |++.+|.
T Consensus 347 pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~----------~~L~~~L~~~---~~~~~~~~g~~~~~~~~~~~~~~r~ 413 (773)
T PRK13766 347 PKLEKLREIVKEQLGKNPDSRIIVFTQYRDTA----------EKIVDLLEKE---GIKAVRFVGQASKDGDKGMSQKEQI 413 (773)
T ss_pred hHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHH----------HHHHHHHHhC---CCceEEEEccccccccCCCCHHHHH
Confidence 356666666654 4568999999999864 4477777654 5677788875 9999999
Q ss_pred HHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCch
Q 024287 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSE 244 (269)
Q Consensus 175 ~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~ 244 (269)
.+++.|++|+.++||+|+++++|+|+|++++||+||.|.++..|+||+||+||.+ .|.+++++..+
T Consensus 414 ~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~----~~~v~~l~~~~ 479 (773)
T PRK13766 414 EILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE----EGRVVVLIAKG 479 (773)
T ss_pred HHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC----CCEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999986 47788887653
No 73
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=7.1e-22 Score=176.92 Aligned_cols=171 Identities=16% Similarity=0.159 Sum_probs=129.9
Q ss_pred ccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhc--CCCceEEEee
Q 024287 52 RQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD--APESGIIFVG 129 (269)
Q Consensus 52 ~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~ 129 (269)
..+.+||||.+.....+...+ ..+++.+... .+......+.++.++..+|...+...+... .+.++||||+
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y-----~l~vv~IPt~--kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~ 481 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVY-----GLPVVRIPTN--RPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTR 481 (656)
T ss_pred HHHhcccCcChHHHHHHHHHH-----CCCeEEeCCC--CCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 467788999987655444322 2344443333 322333445566677778999999998764 3678999999
Q ss_pred ccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCC---CCC--
Q 024287 130 EQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLP---ETT-- 204 (269)
Q Consensus 130 s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~---~~~-- 204 (269)
|++.+ ..+.+.|.+. ++++..+||.++. |+..+..|+.+...|+|||++++||+||+ ++.
T Consensus 482 t~~~s----------e~L~~~L~~~---gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~ 546 (656)
T PRK12898 482 SVAAS----------ERLSALLREA---GLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAAR 546 (656)
T ss_pred cHHHH----------HHHHHHHHHC---CCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhc
Confidence 99874 4478888876 7899999998764 44455556666667999999999999999 665
Q ss_pred ---eEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHH
Q 024287 205 ---HIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELF 247 (269)
Q Consensus 205 ---~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~ 247 (269)
+||+++.|.+...|.||+||+||.| ..|.+++|++..|.-
T Consensus 547 GGLhVI~~d~P~s~r~y~hr~GRTGRqG---~~G~s~~~is~eD~l 589 (656)
T PRK12898 547 GGLHVILTERHDSARIDRQLAGRCGRQG---DPGSYEAILSLEDDL 589 (656)
T ss_pred CCCEEEEcCCCCCHHHHHHhcccccCCC---CCeEEEEEechhHHH
Confidence 9999999999999999999999998 889999999976543
No 74
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=1.2e-21 Score=177.34 Aligned_cols=124 Identities=15% Similarity=0.138 Sum_probs=98.3
Q ss_pred chHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcC-
Q 024287 107 MKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQG- 183 (269)
Q Consensus 107 ~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~- 183 (269)
.|+..+..+++.+ .+.++||||++.+.++. +...| .+..+||++++.+|.++++.|+.|
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~----------~a~~L--------~~~~I~G~ts~~ER~~il~~Fr~~~ 541 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKE----------YAIKL--------GKPFIYGPTSQQERMQILQNFQHNP 541 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHH----------HHHHc--------CCceEECCCCHHHHHHHHHHHHhCC
Confidence 4666666777655 56899999998664222 33322 245689999999999999999975
Q ss_pred CccEEEEeccccccCCCCCCCeEEEecCC-CCccccccccccCCCCCCCCC----CeEEEEecCchhHHH
Q 024287 184 GGYLLVSTDIAARGIDLPETTHIYNFDLP-RSAIDYLHRAGRTGRKPFSDE----KWTVTSIITSEELFV 248 (269)
Q Consensus 184 ~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p-~~~~~~~qr~GR~gR~~~~~~----~g~~~~~~~~~~~~~ 248 (269)
..++||+|+++.+|+|+|++++||+++.| .+...|+||+||++|.+..+. ....|.+++++..+.
T Consensus 542 ~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 542 KVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEM 611 (732)
T ss_pred CccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHH
Confidence 78999999999999999999999999987 599999999999999985433 245588888754443
No 75
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.88 E-value=1.9e-22 Score=167.50 Aligned_cols=210 Identities=14% Similarity=0.133 Sum_probs=148.0
Q ss_pred cccEEEEeccccccCCc-hhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCCCc
Q 024287 17 SVQVLVIDEVDFLFNSS-KQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSC 95 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~-~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (269)
.+.++|+||||+...|| ++++....+-..-..-...+-+.++||..+.+.. -+...+...+++.+.-.+... .
T Consensus 141 ~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqE---Di~~qL~L~~PVAiFkTP~FR--~- 214 (641)
T KOG0352|consen 141 VLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQE---DIAFQLKLRNPVAIFKTPTFR--D- 214 (641)
T ss_pred eeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHH---HHHHHHhhcCcHHhccCcchh--h-
Confidence 35699999999999998 5566666554332223678899999998776542 122223334444433322211 1
Q ss_pred ceeEEEEecCc----chHHHHHHHHh----------hc---CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCC
Q 024287 96 LHHRFVICGKK----MKYQTLLSLIQ----------SD---APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGS 158 (269)
Q Consensus 96 i~~~~~~~~~~----~k~~~l~~ll~----------~~---~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (269)
..++..... +-+..|.+... +. ..+-.||||.|+++++.+| --|... +
T Consensus 215 --NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~A----------I~l~~~---G 279 (641)
T KOG0352|consen 215 --NLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVA----------IMLEIA---G 279 (641)
T ss_pred --hhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHH----------HHhhhc---C
Confidence 111111110 11122222221 11 1346799999999988764 233333 7
Q ss_pred CceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEE
Q 024287 159 SDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238 (269)
Q Consensus 159 ~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~ 238 (269)
+++..||.++...+|.++-+.+.++++.|+++|..+++|+|-|+|..||||+.|.+++-|.|-.||+||.| ....|-
T Consensus 280 i~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDG---k~SyCR 356 (641)
T KOG0352|consen 280 IPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDG---KRSYCR 356 (641)
T ss_pred cchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCC---Ccccee
Confidence 88999999999999999999999999999999999999999999999999999999999999999999998 677888
Q ss_pred EecCchhHHHHH
Q 024287 239 SIITSEELFVLQ 250 (269)
Q Consensus 239 ~~~~~~~~~~~~ 250 (269)
+.++..|...+.
T Consensus 357 LYYsR~D~~~i~ 368 (641)
T KOG0352|consen 357 LYYSRQDKNALN 368 (641)
T ss_pred eeecccchHHHH
Confidence 888887766544
No 76
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.86 E-value=6.3e-21 Score=170.18 Aligned_cols=123 Identities=23% Similarity=0.346 Sum_probs=97.9
Q ss_pred hHHHHHHHHhh----cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEec--------ccCChhHHHH
Q 024287 108 KYQTLLSLIQS----DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLE--------EEMNFNSRAA 175 (269)
Q Consensus 108 k~~~l~~ll~~----~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h--------~~~~~~~r~~ 175 (269)
|++.+.+++.. ....++||||.+|..|.. +..+|.+....+....++- .+|++.++.+
T Consensus 396 kle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~----------l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~e 465 (746)
T KOG0354|consen 396 KLEKLVEILVEQFEQNPDSRTIIFVETRESALA----------LKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKE 465 (746)
T ss_pred hHHHHHHHHHHHhhcCCCccEEEEEehHHHHHH----------HHHHHHhhhhcccccceeeeccccccccccCHHHHHH
Confidence 55555555542 235699999999997544 6677664333333333333 3799999999
Q ss_pred HHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchh
Q 024287 176 SLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEE 245 (269)
Q Consensus 176 ~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~ 245 (269)
++++|++|.+++||||+++++|+|++.+++||-||.-.++...+||.|| ||. +.|.++.+++..+
T Consensus 466 vl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa----~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 466 VLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA----RNSKCVLLTTGSE 530 (746)
T ss_pred HHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc----cCCeEEEEEcchh
Confidence 9999999999999999999999999999999999999999999999999 998 6888898887433
No 77
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.86 E-value=2.8e-21 Score=175.20 Aligned_cols=225 Identities=20% Similarity=0.240 Sum_probs=151.7
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhc-----cCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecC
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS-----SCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNA 88 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~-----~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (269)
-++.|++||+||+| |+.+. .++.++.|+.... ....++++++|||+|+-.. ++..+.-+ .+.-+....
T Consensus 235 l~~~V~LviIDEVH-lLhd~-RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eD-vA~fL~vn----~~~glfsFd 307 (1230)
T KOG0952|consen 235 LFSLVRLVIIDEVH-LLHDD-RGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYED-VARFLRVN----PYAGLFSFD 307 (1230)
T ss_pred hhhheeeEEeeeeh-hhcCc-ccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHH-HHHHhcCC----Cccceeeec
Confidence 35778999999999 66655 5688888886553 4567999999999998543 44333211 122233333
Q ss_pred cccCCCcceeEEEEecCc---c--------hHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHH-----------
Q 024287 89 IKPLPSCLHHRFVICGKK---M--------KYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTL----------- 146 (269)
Q Consensus 89 ~~~~~~~i~~~~~~~~~~---~--------k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~----------- 146 (269)
..-.|..+.+.++-.... . .++.+.+.++ .+.+++|||.++..+.+.|..+.....
T Consensus 308 ~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~ 385 (1230)
T KOG0952|consen 308 QRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPS 385 (1230)
T ss_pred ccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCC
Confidence 333445566766654433 1 2233333333 357999999999987776533322111
Q ss_pred -HHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEE----EecCC------CCc
Q 024287 147 -LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIY----NFDLP------RSA 215 (269)
Q Consensus 147 -~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi----~~~~p------~~~ 215 (269)
..+.|.+.+.. ..+.+|+||...+|.-+.+.|+.|.+++|+||..+++|+|+|+-.++| -||.- ...
T Consensus 386 ~~~k~l~elf~~--g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgi 463 (1230)
T KOG0952|consen 386 PRNKQLKELFQQ--GMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGI 463 (1230)
T ss_pred hhhHHHHHHHHh--hhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehH
Confidence 11333334333 367799999999999999999999999999999999999999765555 13321 134
Q ss_pred cccccccccCCCCCCCCCCeEEEEecCchhHHHHH
Q 024287 216 IDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQ 250 (269)
Q Consensus 216 ~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~ 250 (269)
-+-+|.+|||||+.++ ..|.++++.+.+......
T Consensus 464 lDVlQifGRAGRPqFd-~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 464 LDVLQIFGRAGRPQFD-SSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred HHHHHHHhccCCCCCC-CCceEEEEecccHHHHHH
Confidence 5668999999999988 668888777766555533
No 78
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.86 E-value=9.8e-21 Score=172.09 Aligned_cols=134 Identities=22% Similarity=0.262 Sum_probs=113.4
Q ss_pred CcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhc
Q 024287 105 KKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQ 182 (269)
Q Consensus 105 ~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~ 182 (269)
...++..+.+.++.. .+.+++|||+|++.|+. +.+.|.+. ++++..+||+++..+|.++++.|+.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~----------L~~~L~~~---gi~~~~lh~~~~~~eR~~~l~~fr~ 490 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAED----------LTDYLKEL---GIKVRYLHSEIDTLERVEIIRDLRL 490 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHH----------HHHHHhhh---ccceeeeeCCCCHHHHHHHHHHHhc
Confidence 345566666666543 46789999999987544 77888776 6889999999999999999999999
Q ss_pred CCccEEEEeccccccCCCCCCCeEEEec-----CCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHHHHH
Q 024287 183 GGGYLLVSTDIAARGIDLPETTHIYNFD-----LPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYENE 255 (269)
Q Consensus 183 ~~~~iLv~T~~~~~Gidi~~~~~Vi~~~-----~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 255 (269)
|++.++|||+.+++|+|+|++++|+++| .|.+..+|+||+||+||. ..|.++++++..+..+...+.+.
T Consensus 491 G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~----~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 491 GEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN----VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CCceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC----CCCEEEEEEcCCCHHHHHHHHHH
Confidence 9999999999999999999999999988 799999999999999997 46899999988766665555554
No 79
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.86 E-value=4.8e-21 Score=172.17 Aligned_cols=231 Identities=19% Similarity=0.238 Sum_probs=151.3
Q ss_pred hhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeE
Q 024287 4 LCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVH 83 (269)
Q Consensus 4 l~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~ 83 (269)
|.++|.+|.--++++..|||||+|- +.+...+-..++++-++| ...++|++|||+|+..++.. |.-+... -.
T Consensus 390 LRsMLYrgadliRDvE~VIFDEVHY-iND~eRGvVWEEViIMlP--~HV~~IlLSATVPN~~EFA~--WIGRtK~---K~ 461 (1248)
T KOG0947|consen 390 LRSMLYRGADLIRDVEFVIFDEVHY-INDVERGVVWEEVIIMLP--RHVNFILLSATVPNTLEFAD--WIGRTKQ---KT 461 (1248)
T ss_pred HHHHHhcccchhhccceEEEeeeee-cccccccccceeeeeecc--ccceEEEEeccCCChHHHHH--HhhhccC---ce
Confidence 5688999999999999999999994 444435567778888886 89999999999999977432 1111111 11
Q ss_pred EeecCcccCCCcceeEEEEec-----------------------------------------------------------
Q 024287 84 VHVNAIKPLPSCLHHRFVICG----------------------------------------------------------- 104 (269)
Q Consensus 84 ~~~~~~~~~~~~i~~~~~~~~----------------------------------------------------------- 104 (269)
+.+-.....|..+.|++..-.
T Consensus 462 IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r 541 (1248)
T KOG0947|consen 462 IYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSR 541 (1248)
T ss_pred EEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcc
Confidence 111111111111222211100
Q ss_pred ----CcchH--HHHHHHHh---hcCCCceEEEeeccchhhhhcCCCCchH--------HHHHHHhhhc---CC-------
Q 024287 105 ----KKMKY--QTLLSLIQ---SDAPESGIIFVGEQSEKSKKAGNAPSTT--------LLVDFLSNSY---KG------- 157 (269)
Q Consensus 105 ----~~~k~--~~l~~ll~---~~~~~~~lIF~~s~~~~~~~~~~~~~~~--------~~~~~l~~~~---~~------- 157 (269)
..++. ..+.+++. ...--++|+||-|++.|+.-|+-+.+.. ++.-++++.. ++
T Consensus 542 ~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQ 621 (1248)
T KOG0947|consen 542 GSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQ 621 (1248)
T ss_pred cccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchH
Confidence 00011 12333433 3233589999999999888663332211 1221221111 00
Q ss_pred --------CCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEe----c----CCCCccccccc
Q 024287 158 --------SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNF----D----LPRSAIDYLHR 221 (269)
Q Consensus 158 --------~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~----~----~p~~~~~~~qr 221 (269)
.=.+..|||++-+-.++-++..|..|-+++|++|..+++|+|.|.-.+|+.- | ---.+-.|.||
T Consensus 622 vl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQM 701 (1248)
T KOG0947|consen 622 VLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQM 701 (1248)
T ss_pred HHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhh
Confidence 0026789999999999999999999999999999999999999998888741 1 11257899999
Q ss_pred cccCCCCCCCCCCeEEEEecCc
Q 024287 222 AGRTGRKPFSDEKWTVTSIITS 243 (269)
Q Consensus 222 ~GR~gR~~~~~~~g~~~~~~~~ 243 (269)
+|||||.|.+ ..|.++++...
T Consensus 702 AGRAGRRGlD-~tGTVii~~~~ 722 (1248)
T KOG0947|consen 702 AGRAGRRGLD-ETGTVIIMCKD 722 (1248)
T ss_pred hccccccccC-cCceEEEEecC
Confidence 9999999987 88988877653
No 80
>PRK09694 helicase Cas3; Provisional
Probab=99.86 E-value=1e-20 Score=175.65 Aligned_cols=196 Identities=19% Similarity=0.259 Sum_probs=123.0
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhH-HHHHHhhh--c-ccCceeEEe---------
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRF-LHNCIQQK--W-TKSDVVHVH--------- 85 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~-l~~~~~~~--~-~~~~~~~~~--------- 85 (269)
++|||||+|.+ +. .....+..+++.+. ....++|+||||+|..... +...+... . ....+..+.
T Consensus 441 svvIiDEVHAy-D~-ym~~lL~~~L~~l~-~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~ 517 (878)
T PRK09694 441 SVLIVDEVHAY-DA-YMYGLLEAVLKAQA-QAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQR 517 (878)
T ss_pred CeEEEechhhC-CH-HHHHHHHHHHHHHH-hcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccccee
Confidence 48999999954 33 34456677776654 3567899999999987542 22211100 0 000000000
Q ss_pred --ecCc-ccCCCcceeEE--EEecC-cchHHHHHHHHhh-cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCC
Q 024287 86 --VNAI-KPLPSCLHHRF--VICGK-KMKYQTLLSLIQS-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGS 158 (269)
Q Consensus 86 --~~~~-~~~~~~i~~~~--~~~~~-~~k~~~l~~ll~~-~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (269)
.... ...+....... ..... ......+..+++. ..+++++|||||++.|+. +++.|++.+..+
T Consensus 518 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~----------ly~~L~~~~~~~ 587 (878)
T PRK09694 518 FDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQK----------LYQRLKELNNTQ 587 (878)
T ss_pred eeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHH----------HHHHHHhhCCCC
Confidence 0000 00001111111 11111 1112333344443 246789999999997554 778887765444
Q ss_pred CceEEecccCChhHHH----HHHHHH-hcCC---ccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCC
Q 024287 159 SDVLLLEEEMNFNSRA----ASLLEV-RQGG---GYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230 (269)
Q Consensus 159 ~~v~~~h~~~~~~~r~----~~~~~f-~~~~---~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~ 230 (269)
..+..+||.++..+|. ++++.| ++|+ ..|||+|+++++|+|+ +.+++|....| ..+++||+||++|.+.
T Consensus 588 ~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 588 VDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 6799999999999984 567778 5665 4699999999999999 57999988777 6799999999999985
No 81
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.86 E-value=3.8e-21 Score=173.36 Aligned_cols=241 Identities=20% Similarity=0.205 Sum_probs=152.1
Q ss_pred hhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhc---cCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 4 LCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS---SCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 4 l~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~---~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
++.++..|+ +..+++||+||.|.+.+.+ ....++.++.+.. .....|+|+||||+|+.- .+.+.+....+..+
T Consensus 330 in~lie~g~--~~~~g~vvVdElhmi~d~~-rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~-lL~~~L~A~~y~t~ 405 (1008)
T KOG0950|consen 330 INSLIEQGR--LDFLGMVVVDELHMIGDKG-RGAILELLLAKILYENLETSVQIIGMSATIPNNS-LLQDWLDAFVYTTR 405 (1008)
T ss_pred HHHHHhcCC--ccccCcEEEeeeeeeeccc-cchHHHHHHHHHHHhccccceeEeeeecccCChH-HHHHHhhhhheecc
Confidence 356666666 6789999999999766666 5567777777654 233467999999999862 23333332222222
Q ss_pred eeEEeecCcccCCCcceeE---------E---EE-ecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchH
Q 024287 81 VVHVHVNAIKPLPSCLHHR---------F---VI-CGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTT 145 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~---------~---~~-~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~ 145 (269)
+..+.+.+.-.....+... . .. ..+++- +.+..+..+. ++.++||||++++.|+.+|..+..
T Consensus 406 fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dp-D~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~-- 482 (1008)
T KOG0950|consen 406 FRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDP-DHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAK-- 482 (1008)
T ss_pred cCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCC-cceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHH--
Confidence 2222111111000000000 0 00 000000 1222222221 245699999999999998722111
Q ss_pred HHHHH------Hh-----------hhcC----------CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccC
Q 024287 146 LLVDF------LS-----------NSYK----------GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGI 198 (269)
Q Consensus 146 ~~~~~------l~-----------~~~~----------~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gi 198 (269)
.+... +. ...+ -.+.+..+|+++...+|+.+...|+.|...+++||+.++.|+
T Consensus 483 ~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGV 562 (1008)
T KOG0950|consen 483 KVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGV 562 (1008)
T ss_pred HhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccC
Confidence 00000 00 0000 023478899999999999999999999999999999999999
Q ss_pred CCCCCCeEEEec----CCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHH
Q 024287 199 DLPETTHIYNFD----LPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRY 252 (269)
Q Consensus 199 di~~~~~Vi~~~----~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~ 252 (269)
|+|...++|-+. -+.+..+|.||+||+||.|.+ ..|.+++++.+.+.....++
T Consensus 563 NLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gid-T~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 563 NLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGID-TLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred cCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccc-cCcceEEEeeccchhHHHHH
Confidence 999999988643 234678999999999999977 78889999998887665543
No 82
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.85 E-value=2.7e-20 Score=170.19 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=120.6
Q ss_pred cchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcC
Q 024287 106 KMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQG 183 (269)
Q Consensus 106 ~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~ 183 (269)
..+...+.+.+... .+.+++|||+|++.|+. +.+.|.+. ++++..+||+++..+|..+++.|+.|
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~----------L~~~L~~~---gi~~~~~h~~~~~~~R~~~l~~f~~g 495 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAED----------LTDYLKEL---GIKVRYLHSDIDTLERVEIIRDLRLG 495 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH----------HHHHHhhc---ceeEEEEECCCCHHHHHHHHHHHHcC
Confidence 34566666666543 45789999999987544 77778776 68899999999999999999999999
Q ss_pred CccEEEEeccccccCCCCCCCeEEEecC-----CCCccccccccccCCCCCCCCCCeEEEEecCc---------hhHHHH
Q 024287 184 GGYLLVSTDIAARGIDLPETTHIYNFDL-----PRSAIDYLHRAGRTGRKPFSDEKWTVTSIITS---------EELFVL 249 (269)
Q Consensus 184 ~~~iLv~T~~~~~Gidi~~~~~Vi~~~~-----p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~---------~~~~~~ 249 (269)
...++|||+.+++|+|+|++++||++|. |.+..+|+||+||+||. ..|.++++++. .+....
T Consensus 496 ~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~----~~G~~i~~~~~~~~~~~~~~~~~~~~ 571 (652)
T PRK05298 496 EFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN----VNGKVILYADKITDSMQKAIDETERR 571 (652)
T ss_pred CceEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC----CCCEEEEEecCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999884 78999999999999996 57899999983 577777
Q ss_pred HHHHHHhcCccccccc
Q 024287 250 QRYENELKFKSEELTL 265 (269)
Q Consensus 250 ~~~~~~~~~~~~~~~~ 265 (269)
++++..++.....+|-
T Consensus 572 ~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 572 REIQIAYNEEHGITPK 587 (652)
T ss_pred HHHHHHhhhccCCCCh
Confidence 8888888877776664
No 83
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.85 E-value=3.8e-21 Score=176.66 Aligned_cols=224 Identities=21% Similarity=0.273 Sum_probs=152.7
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhc-----cCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecC
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS-----SCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNA 88 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~-----~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (269)
..+-++++|+||.| |+.+. .++.++++..... .....+++++|||+|+-.. ...++ .-+..-+....
T Consensus 434 Y~qlvrLlIIDEIH-LLhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~D-V~~Fl-----~v~~~glf~fd 505 (1674)
T KOG0951|consen 434 YEQLVRLLIIDEIH-LLHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYED-VASFL-----RVDPEGLFYFD 505 (1674)
T ss_pred HHHHHHHHhhhhhh-hcccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchhh-hHHHh-----ccCcccccccC
Confidence 34467899999999 66555 4588888876554 2347999999999998633 21111 12222233333
Q ss_pred cccCCCcceeEEEEecCcchH---HHHH-----HHHhhcCCCceEEEeeccchhhhhcCCCCchHH----HHHHH-----
Q 024287 89 IKPLPSCLHHRFVICGKKMKY---QTLL-----SLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTL----LVDFL----- 151 (269)
Q Consensus 89 ~~~~~~~i~~~~~~~~~~~k~---~~l~-----~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~----~~~~l----- 151 (269)
..-.|..+.|.|+-+...... .+.. ..++.....|+|||+-||+++.++|.-+++... +..++
T Consensus 506 ~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~ 585 (1674)
T KOG0951|consen 506 SSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSA 585 (1674)
T ss_pred cccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccc
Confidence 333456688888877654322 2222 233333568999999999998887744442221 11222
Q ss_pred -----------------hhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEE----ec
Q 024287 152 -----------------SNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYN----FD 210 (269)
Q Consensus 152 -----------------~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~----~~ 210 (269)
++.+ .+.+..||+||+..+|..+++.|..|.++++|+|-.+++|+|+|+-+++|- ||
T Consensus 586 s~eilrtea~~~kn~dLkdLL--pygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~ 663 (1674)
T KOG0951|consen 586 SREILRTEAGQAKNPDLKDLL--PYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYD 663 (1674)
T ss_pred hhhhhhhhhhcccChhHHHHh--hccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccC
Confidence 2222 234788999999999999999999999999999999999999999888883 44
Q ss_pred ------CCCCccccccccccCCCCCCCCCCeEEEEecCchhHHH
Q 024287 211 ------LPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFV 248 (269)
Q Consensus 211 ------~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~ 248 (269)
.+.++.+.+||+||+||++.+ ..|-.++.....+...
T Consensus 664 pekg~w~elsp~dv~qmlgragrp~~D-~~gegiiit~~se~qy 706 (1674)
T KOG0951|consen 664 PEKGRWTELSPLDVMQMLGRAGRPQYD-TCGEGIIITDHSELQY 706 (1674)
T ss_pred cccCccccCCHHHHHHHHhhcCCCccC-cCCceeeccCchHhhh
Confidence 245788999999999999877 4555555555544444
No 84
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.84 E-value=5.4e-20 Score=170.41 Aligned_cols=204 Identities=16% Similarity=0.147 Sum_probs=151.9
Q ss_pred HHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccC-CchhhHHHHHHhhhcccCceeEEee
Q 024287 8 IEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI-PQHRRFLHNCIQQKWTKSDVVHVHV 86 (269)
Q Consensus 8 l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl-~~~~~~l~~~~~~~~~~~~~~~~~~ 86 (269)
|.++.+.+++++++||||-|+ +| ..+ ++-++.++ .+..++.+|||. |.++.... .+-++...+..
T Consensus 707 LL~kdv~FkdLGLlIIDEEqR---FG--Vk~-KEkLK~Lr--~~VDvLTLSATPIPRTL~Msm------~GiRdlSvI~T 772 (1139)
T COG1197 707 LLSKDVKFKDLGLLIIDEEQR---FG--VKH-KEKLKELR--ANVDVLTLSATPIPRTLNMSL------SGIRDLSVIAT 772 (1139)
T ss_pred hhCCCcEEecCCeEEEechhh---cC--ccH-HHHHHHHh--ccCcEEEeeCCCCcchHHHHH------hcchhhhhccC
Confidence 455778999999999999997 44 222 33344444 789999999996 55544322 23344455554
Q ss_pred cCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecc
Q 024287 87 NAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEE 166 (269)
Q Consensus 87 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~ 166 (269)
.+....+ ++.++...++..-.+++.+-+. .++|+-.-.|.++. ...+.+.|++..+. ..+..-||
T Consensus 773 PP~~R~p--V~T~V~~~d~~~ireAI~REl~--RgGQvfYv~NrV~~----------Ie~~~~~L~~LVPE-arI~vaHG 837 (1139)
T COG1197 773 PPEDRLP--VKTFVSEYDDLLIREAILRELL--RGGQVFYVHNRVES----------IEKKAERLRELVPE-ARIAVAHG 837 (1139)
T ss_pred CCCCCcc--eEEEEecCChHHHHHHHHHHHh--cCCEEEEEecchhh----------HHHHHHHHHHhCCc-eEEEEeec
Confidence 4444322 5666665555544444443332 35788888888775 55588889888875 57999999
Q ss_pred cCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCC-CCccccccccccCCCCCCCCCCeEEEEecCc
Q 024287 167 EMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLP-RSAIDYLHRAGRTGRKPFSDEKWTVTSIITS 243 (269)
Q Consensus 167 ~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p-~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~ 243 (269)
.|+..+-+.++.+|-+|+.+|||||.+.+.|+|+|+++.+|.-+.- ...++..|.-||+||.. ..+.||+++.+
T Consensus 838 QM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~---~~AYAYfl~p~ 912 (1139)
T COG1197 838 QMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN---KQAYAYFLYPP 912 (1139)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc---ceEEEEEeecC
Confidence 9999999999999999999999999999999999999988865543 46889999999999997 89999998875
No 85
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=2.9e-20 Score=169.92 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=111.0
Q ss_pred EEecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHH
Q 024287 101 VICGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178 (269)
Q Consensus 101 ~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~ 178 (269)
+.++...|..++...+... .+.++||||+|++. +..+...|.+. ++++..+||.+...++..+..
T Consensus 406 i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~----------se~l~~~L~~~---gi~~~~L~~~~~~~e~~~i~~ 472 (790)
T PRK09200 406 VFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQ----------SETFSKLLDEA---GIPHNLLNAKNAAKEAQIIAE 472 (790)
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH----------HHHHHHHHHHC---CCCEEEecCCccHHHHHHHHH
Confidence 3346677999998888653 57899999999886 44577888776 789999999999888887777
Q ss_pred HHhcCCccEEEEeccccccCCC---CCCC-----eEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHH
Q 024287 179 EVRQGGGYLLVSTDIAARGIDL---PETT-----HIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFV 248 (269)
Q Consensus 179 ~f~~~~~~iLv~T~~~~~Gidi---~~~~-----~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~ 248 (269)
.++.| +|+|||++++||+|+ |++. +||++++|.+...|.||+||+||.| ..|.+++|++.+|.-.
T Consensus 473 ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G---~~G~s~~~is~eD~l~ 545 (790)
T PRK09200 473 AGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQG---DPGSSQFFISLEDDLL 545 (790)
T ss_pred cCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCC---CCeeEEEEEcchHHHH
Confidence 77665 799999999999999 7998 9999999999999999999999998 8899999998765533
No 86
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.83 E-value=4e-20 Score=162.72 Aligned_cols=229 Identities=20% Similarity=0.275 Sum_probs=152.4
Q ss_pred hhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeE
Q 024287 4 LCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVH 83 (269)
Q Consensus 4 l~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~ 83 (269)
|.++|.+|.--++.+.-|||||+|-|=+.. .+-.+++-+-.+ +.+.+.+++|||+|++.++.. |...+-. .+..
T Consensus 222 LRsMLYRGSEvmrEVaWVIFDEIHYMRDkE-RGVVWEETIIll--P~~vr~VFLSATiPNA~qFAe--WI~~ihk-QPcH 295 (1041)
T KOG0948|consen 222 LRSMLYRGSEVMREVAWVIFDEIHYMRDKE-RGVVWEETIILL--PDNVRFVFLSATIPNARQFAE--WICHIHK-QPCH 295 (1041)
T ss_pred HHHHHhccchHhheeeeEEeeeehhccccc-cceeeeeeEEec--cccceEEEEeccCCCHHHHHH--HHHHHhc-CCce
Confidence 567888898889999999999999766554 222333333344 489999999999999966432 2222222 2333
Q ss_pred EeecCcccCCCcceeEEEE---------ecCc-----chHHHHHHHH---------------------------------
Q 024287 84 VHVNAIKPLPSCLHHRFVI---------CGKK-----MKYQTLLSLI--------------------------------- 116 (269)
Q Consensus 84 ~~~~~~~~~~~~i~~~~~~---------~~~~-----~k~~~l~~ll--------------------------------- 116 (269)
+.+....+ ..++|+.++ ++.+ +.+......|
T Consensus 296 VVYTdyRP--TPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~k 373 (1041)
T KOG0948|consen 296 VVYTDYRP--TPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYK 373 (1041)
T ss_pred EEeecCCC--CcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHH
Confidence 33332333 235555433 2222 1222222222
Q ss_pred -----hhcCCCceEEEeeccchhhhhcCCCCc-----------hHHHH----HHHhhh-------------cCCCCceEE
Q 024287 117 -----QSDAPESGIIFVGEQSEKSKKAGNAPS-----------TTLLV----DFLSNS-------------YKGSSDVLL 163 (269)
Q Consensus 117 -----~~~~~~~~lIF~~s~~~~~~~~~~~~~-----------~~~~~----~~l~~~-------------~~~~~~v~~ 163 (269)
-.....++|||+-|+++|+..|..... +..+. ..|.+. +.. .++.
T Consensus 374 iVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~R--GIGI 451 (1041)
T KOG0948|consen 374 IVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRR--GIGI 451 (1041)
T ss_pred HHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHh--cccc
Confidence 222345899999999999997732211 11111 001111 011 3778
Q ss_pred ecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEE----ecCC----CCccccccccccCCCCCCCCCCe
Q 024287 164 LEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYN----FDLP----RSAIDYLHRAGRTGRKPFSDEKW 235 (269)
Q Consensus 164 ~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~----~~~p----~~~~~~~qr~GR~gR~~~~~~~g 235 (269)
||||+-+--++.+.-.|.+|-+++|++|..++.|+|.|.-++|+. ||-- .+--.|+||.|||||.|.+ ..|
T Consensus 452 HHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~D-drG 530 (1041)
T KOG0948|consen 452 HHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGID-DRG 530 (1041)
T ss_pred ccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCC-CCc
Confidence 999999999999999999999999999999999999999888874 3311 2567899999999999987 899
Q ss_pred EEEEecCc
Q 024287 236 TVTSIITS 243 (269)
Q Consensus 236 ~~~~~~~~ 243 (269)
.||.++++
T Consensus 531 ivIlmiDe 538 (1041)
T KOG0948|consen 531 IVILMIDE 538 (1041)
T ss_pred eEEEEecC
Confidence 99999885
No 87
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.83 E-value=1e-19 Score=133.98 Aligned_cols=126 Identities=31% Similarity=0.466 Sum_probs=106.8
Q ss_pred eeEEEEecCcchHHHHHHHHhhcC--CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHH
Q 024287 97 HHRFVICGKKMKYQTLLSLIQSDA--PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174 (269)
Q Consensus 97 ~~~~~~~~~~~k~~~l~~ll~~~~--~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~ 174 (269)
.+.+...+ ..|...+..++.... ++++||||++.+.++. +.+.|.+. ...+..+||++++.+|.
T Consensus 3 ~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~----------~~~~l~~~---~~~~~~~~~~~~~~~~~ 68 (131)
T cd00079 3 KQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDE----------LAELLRKP---GIKVAALHGDGSQEERE 68 (131)
T ss_pred EEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHH----------HHHHHHhc---CCcEEEEECCCCHHHHH
Confidence 34444433 368888888887663 7899999999886544 66666653 57899999999999999
Q ss_pred HHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEE
Q 024287 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239 (269)
Q Consensus 175 ~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~ 239 (269)
.+.+.|+++...+|++|+.+++|+|+|.+++||.++.|.+..++.|++||++|.| ..|.++.
T Consensus 69 ~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~---~~~~~~~ 130 (131)
T cd00079 69 EVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAG---QKGTAIL 130 (131)
T ss_pred HHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCC---CCceEEe
Confidence 9999999999999999999999999999999999999999999999999999998 5676664
No 88
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.82 E-value=1.4e-19 Score=168.60 Aligned_cols=227 Identities=19% Similarity=0.191 Sum_probs=153.9
Q ss_pred eecCcccEEEEeccccccCCchhhhHHHHHHhhhc-----cCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeec
Q 024287 13 FKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS-----SCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVN 87 (269)
Q Consensus 13 ~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~-----~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~ 87 (269)
+.++++++||+||+|.+- |-++..+.-+++.+. .+.+.|+++.|||+.+..+...+.+. .+.... +.
T Consensus 191 ~~~~~Lk~lVvDElHtYr--Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~-----~~f~~~-v~ 262 (851)
T COG1205 191 WLLRNLKYLVVDELHTYR--GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFG-----RDFEVP-VD 262 (851)
T ss_pred HHHhcCcEEEEecceecc--ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcC-----Ccceee-cc
Confidence 577889999999999652 323344444443332 34689999999999998776554332 332331 22
Q ss_pred CcccCCCcceeEEEEec---------CcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhc-
Q 024287 88 AIKPLPSCLHHRFVICG---------KKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY- 155 (269)
Q Consensus 88 ~~~~~~~~i~~~~~~~~---------~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~- 155 (269)
....+......+..-+ ..++...+..+.... .+-++++|+.++.+++...... ...+...-
T Consensus 263 -~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~------~~~~~~~~~ 335 (851)
T COG1205 263 -EDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSP------RRRLVREGG 335 (851)
T ss_pred -CCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhch------hHHHhhcch
Confidence 2223333444444433 224444444444433 4579999999999877642111 11111111
Q ss_pred CCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCC-CccccccccccCCCCCCCCCC
Q 024287 156 KGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPR-SAIDYLHRAGRTGRKPFSDEK 234 (269)
Q Consensus 156 ~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~-~~~~~~qr~GR~gR~~~~~~~ 234 (269)
.....+..++|+|.+.+|..+...|+.|+..++++|++++.|+|+.+++.||..+.|. +..++.||+||+||.+ ..
T Consensus 336 ~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~---~~ 412 (851)
T COG1205 336 KLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRG---QE 412 (851)
T ss_pred hhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCC---CC
Confidence 1124688999999999999999999999999999999999999999999999999999 8999999999999998 44
Q ss_pred eEEEEec--CchhHHHHHHHHHHhc
Q 024287 235 WTVTSII--TSEELFVLQRYENELK 257 (269)
Q Consensus 235 g~~~~~~--~~~~~~~~~~~~~~~~ 257 (269)
+..+... ++.|..++..-+..++
T Consensus 413 ~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 413 SLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred ceEEEEeCCCccchhhhhCcHhhhh
Confidence 4444443 3456566555555554
No 89
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.4e-18 Score=140.94 Aligned_cols=201 Identities=19% Similarity=0.190 Sum_probs=133.7
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcc-cCCCc
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIK-PLPSC 95 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 95 (269)
.++++||||+|.. ..... +.+..-+++.+ .....++.+|||.++..+ ++....+...+.+..-. ..+-.
T Consensus 202 aFD~liIDEVDAF-P~~~d-~~L~~Av~~ar-k~~g~~IylTATp~k~l~-------r~~~~g~~~~~klp~RfH~~pLp 271 (441)
T COG4098 202 AFDLLIIDEVDAF-PFSDD-QSLQYAVKKAR-KKEGATIYLTATPTKKLE-------RKILKGNLRILKLPARFHGKPLP 271 (441)
T ss_pred hccEEEEeccccc-cccCC-HHHHHHHHHhh-cccCceEEEecCChHHHH-------HHhhhCCeeEeecchhhcCCCCC
Confidence 4679999999954 33322 33333333332 377899999999887644 22333344444443322 12222
Q ss_pred ceeEEEEecCcchH------HHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEeccc
Q 024287 96 LHHRFVICGKKMKY------QTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEE 167 (269)
Q Consensus 96 i~~~~~~~~~~~k~------~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~ 167 (269)
+..+...-+.+.++ ..+...++.. .+.+++||+++.+.+++ +++.|++.++. ..+..+||.
T Consensus 272 vPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq----------~a~~lk~~~~~-~~i~~Vhs~ 340 (441)
T COG4098 272 VPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQ----------VAAALKKKLPK-ETIASVHSE 340 (441)
T ss_pred CCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHH----------HHHHHHhhCCc-cceeeeecc
Confidence 33333322322222 2566666544 35799999999997555 66777666654 567789988
Q ss_pred CChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCC--CCccccccccccCCCCCCCCCCeEEEEec
Q 024287 168 MNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLP--RSAIDYLHRAGRTGRKPFSDEKWTVTSII 241 (269)
Q Consensus 168 ~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p--~~~~~~~qr~GR~gR~~~~~~~g~~~~~~ 241 (269)
. ..|.+.++.|++|++.+|++|++++||+.+|++++.+.-.-. .+.+..+|.+||+||.-.. -.|.+++|=
T Consensus 341 d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~-PtGdv~FFH 413 (441)
T COG4098 341 D--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLER-PTGDVLFFH 413 (441)
T ss_pred C--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcC-CCCcEEEEe
Confidence 5 478889999999999999999999999999999987643222 4678899999999999644 567666553
No 90
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.81 E-value=4.1e-19 Score=161.21 Aligned_cols=129 Identities=17% Similarity=0.234 Sum_probs=108.6
Q ss_pred EEecCcchHHHHHHHHhh--cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHH
Q 024287 101 VICGKKMKYQTLLSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178 (269)
Q Consensus 101 ~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~ 178 (269)
+.+...+|..++.+.+.+ ..+.++||||+|++. +..+...|.+. ++++..+||.+.+.++..+.+
T Consensus 402 i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~----------se~ls~~L~~~---gi~~~~L~a~~~~~E~~ii~~ 468 (762)
T TIGR03714 402 IYATLPEKLMATLEDVKEYHETGQPVLLITGSVEM----------SEIYSELLLRE---GIPHNLLNAQNAAKEAQIIAE 468 (762)
T ss_pred EEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHH----------HHHHHHHHHHC---CCCEEEecCCChHHHHHHHHH
Confidence 445566789988888865 457899999999886 44577888776 788999999999988877777
Q ss_pred HHhcCCccEEEEeccccccCCCC---------CCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHH
Q 024287 179 EVRQGGGYLLVSTDIAARGIDLP---------ETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFV 248 (269)
Q Consensus 179 ~f~~~~~~iLv~T~~~~~Gidi~---------~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~ 248 (269)
.++.| .|+|||++++||+||| ++++|++++.|....+ .||.||+||.| ..|.+++|++.+|.-.
T Consensus 469 ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG---~~G~s~~~is~eD~l~ 541 (762)
T TIGR03714 469 AGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQG---DPGSSQFFVSLEDDLI 541 (762)
T ss_pred cCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCC---CceeEEEEEccchhhh
Confidence 66665 7999999999999999 8999999999988766 99999999998 8899999998765533
No 91
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.81 E-value=3.7e-19 Score=163.33 Aligned_cols=218 Identities=19% Similarity=0.302 Sum_probs=150.9
Q ss_pred chhhHHHHhCceecCcccEEEEecccc-ccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 2 GSLCQLIEKHIFKLESVQVLVIDEVDF-LFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 2 grl~~~l~~~~~~l~~~~~lViDE~~~-l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
|=|+..++... .|+.++++||||+|. .++....+..+..++...+ ...++|+||||+... .+. ..+...+
T Consensus 148 GiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr--~DLKiIimSATld~~--rfs----~~f~~ap 218 (845)
T COG1643 148 GILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRR--DDLKLIIMSATLDAE--RFS----AYFGNAP 218 (845)
T ss_pred HHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC--CCceEEEEecccCHH--HHH----HHcCCCC
Confidence 45666666655 499999999999994 3343444555556565554 469999999999653 222 2232223
Q ss_pred eeEEeecCcccCCCcceeEEEEec-Ccc-hHHHHHHHH---hhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhh-h
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICG-KKM-KYQTLLSLI---QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSN-S 154 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~-k~~~l~~ll---~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~-~ 154 (269)
...+... ..| +..+|.... .+. -...+...+ .....+.++||.+...+.+. ..+.|.+ .
T Consensus 219 vi~i~GR---~fP--Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~----------~~~~L~~~~ 283 (845)
T COG1643 219 VIEIEGR---TYP--VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIER----------TAEWLEKAE 283 (845)
T ss_pred EEEecCC---ccc--eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHH----------HHHHHHhcc
Confidence 3222222 111 444443222 222 233333333 34457899999999887444 6666665 4
Q ss_pred cCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecC------------------CCCcc
Q 024287 155 YKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDL------------------PRSAI 216 (269)
Q Consensus 155 ~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~------------------p~~~~ 216 (269)
+.....+.++||.++..++..+++--..|.-+|+++|++++-++.||++.+||+-+. |.|-+
T Consensus 284 l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqA 363 (845)
T COG1643 284 LGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKA 363 (845)
T ss_pred ccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechh
Confidence 434678999999999999988777666666669999999999999999999997552 44788
Q ss_pred ccccccccCCCCCCCCCCeEEEEecCchhHH
Q 024287 217 DYLHRAGRTGRKPFSDEKWTVTSIITSEELF 247 (269)
Q Consensus 217 ~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~ 247 (269)
+..||.|||||. ..|+||-++++++..
T Consensus 364 sA~QRaGRAGR~----~pGicyRLyse~~~~ 390 (845)
T COG1643 364 SADQRAGRAGRT----GPGICYRLYSEEDFL 390 (845)
T ss_pred hhhhhccccccC----CCceEEEecCHHHHH
Confidence 889999999999 589999999986665
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=2.7e-18 Score=152.61 Aligned_cols=94 Identities=20% Similarity=0.254 Sum_probs=78.0
Q ss_pred hHHHHHHHhhhcCCCCceEEecccCChhHH--HHHHHHHhcCCccEEEEeccccccCCCCCCCeEE--EecCCCC-----
Q 024287 144 TTLLVDFLSNSYKGSSDVLLLEEEMNFNSR--AASLLEVRQGGGYLLVSTDIAARGIDLPETTHIY--NFDLPRS----- 214 (269)
Q Consensus 144 ~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r--~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi--~~~~p~~----- 214 (269)
++.+.+.|.+.+++ .++..+|++++...+ +++++.|++|+.+|||+|+++++|+|+|++++|+ ++|...+
T Consensus 271 te~~~e~l~~~fp~-~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~r 349 (505)
T TIGR00595 271 TEQVEEELAKLFPG-ARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFR 349 (505)
T ss_pred HHHHHHHHHhhCCC-CcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccc
Confidence 56788889888864 789999999987766 8899999999999999999999999999999885 5554222
Q ss_pred -----ccccccccccCCCCCCCCCCeEEEEec
Q 024287 215 -----AIDYLHRAGRTGRKPFSDEKWTVTSII 241 (269)
Q Consensus 215 -----~~~~~qr~GR~gR~~~~~~~g~~~~~~ 241 (269)
...|.|++||+||.+ ..|.+++..
T Consensus 350 a~E~~~~ll~q~~GRagR~~---~~g~viiqt 378 (505)
T TIGR00595 350 AAERGFQLLTQVAGRAGRAE---DPGQVIIQT 378 (505)
T ss_pred hHHHHHHHHHHHHhccCCCC---CCCEEEEEe
Confidence 356799999999987 678777433
No 93
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.81 E-value=3e-19 Score=146.80 Aligned_cols=216 Identities=17% Similarity=0.156 Sum_probs=152.0
Q ss_pred ceecCcccEEEEeccccccCCc-hhhhHHHHHHhhhccCCCccEEEEeccCCchhh-HHHHHHhhhcccCceeEEeecCc
Q 024287 12 IFKLESVQVLVIDEVDFLFNSS-KQVSSLKKLLASYSSCNNRQTVFASASIPQHRR-FLHNCIQQKWTKSDVVHVHVNAI 89 (269)
Q Consensus 12 ~~~l~~~~~lViDE~~~l~~~~-~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~-~l~~~~~~~~~~~~~~~~~~~~~ 89 (269)
.+....+.++-+||+|+-..|| ++++....+--.-+..++.+++.++||..+.+. ...+.+-- ....++..
T Consensus 210 a~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~i----e~~~tf~a--- 282 (695)
T KOG0353|consen 210 ALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCI----EAAFTFRA--- 282 (695)
T ss_pred HhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhH----Hhhheeec---
Confidence 3445566799999999999998 333443332211122478999999999876632 22221100 00001111
Q ss_pred ccCCCcceeEEEEecC--cchHHHHHHHHhh-cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecc
Q 024287 90 KPLPSCLHHRFVICGK--KMKYQTLLSLIQS-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEE 166 (269)
Q Consensus 90 ~~~~~~i~~~~~~~~~--~~k~~~l~~ll~~-~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~ 166 (269)
.-...++...+..-+. ++-.+.+..+++. ..++..||||-|++.+++ +...|+++ ++.+..+|.
T Consensus 283 ~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ek----------va~alkn~---gi~a~~yha 349 (695)
T KOG0353|consen 283 GFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEK----------VAKALKNH---GIHAGAYHA 349 (695)
T ss_pred ccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHH----------HHHHHHhc---Ccccccccc
Confidence 0112233333333222 3445555556653 356778999999997655 77888888 889999999
Q ss_pred cCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCcccccc--------------------------
Q 024287 167 EMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLH-------------------------- 220 (269)
Q Consensus 167 ~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~q-------------------------- 220 (269)
.|.+.+|..+-..+..|+++++|+|-++++|+|-|++..|||..+|.+.+.|.|
T Consensus 350 ~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqini 429 (695)
T KOG0353|consen 350 NLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINI 429 (695)
T ss_pred ccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeeh
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred -----------------ccccCCCCCCCCCCeEEEEecCchhHHHHH
Q 024287 221 -----------------RAGRTGRKPFSDEKWTVTSIITSEELFVLQ 250 (269)
Q Consensus 221 -----------------r~GR~gR~~~~~~~g~~~~~~~~~~~~~~~ 250 (269)
..||+||.+ ....|++.+.-.|.....
T Consensus 430 levctnfkiffavfsekesgragrd~---~~a~cilyy~~~difk~s 473 (695)
T KOG0353|consen 430 LEVCTNFKIFFAVFSEKESGRAGRDD---MKADCILYYGFADIFKIS 473 (695)
T ss_pred hhhhccceeeeeeecchhccccccCC---CcccEEEEechHHHHhHH
Confidence 679999987 777888877766655433
No 94
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.81 E-value=6.9e-20 Score=122.58 Aligned_cols=72 Identities=33% Similarity=0.592 Sum_probs=70.5
Q ss_pred CCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCC
Q 024287 158 SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKP 229 (269)
Q Consensus 158 ~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~ 229 (269)
++.+..+||++++.+|..+++.|+++...+||||+++++|+|+|.+++||+++.|.++.+|.|++||++|.|
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999986
No 95
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.79 E-value=4.8e-18 Score=156.18 Aligned_cols=96 Identities=22% Similarity=0.256 Sum_probs=79.2
Q ss_pred chHHHHHHHhhhcCCCCceEEecccCCh--hHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEE--ecCCCCc---
Q 024287 143 STTLLVDFLSNSYKGSSDVLLLEEEMNF--NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYN--FDLPRSA--- 215 (269)
Q Consensus 143 ~~~~~~~~l~~~~~~~~~v~~~h~~~~~--~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~--~~~p~~~--- 215 (269)
.++.+.+.|.+.+++ .++..+|+++.. .+++++++.|++|+.+|||+|+++++|+|+|++++|+. .|.+.+.
T Consensus 438 G~e~~~e~l~~~fp~-~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdf 516 (679)
T PRK05580 438 GTERLEEELAELFPE-ARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDF 516 (679)
T ss_pred cHHHHHHHHHHhCCC-CcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCcc
Confidence 356788888888774 689999999874 56889999999999999999999999999999999864 4444333
Q ss_pred -------cccccccccCCCCCCCCCCeEEEEecC
Q 024287 216 -------IDYLHRAGRTGRKPFSDEKWTVTSIIT 242 (269)
Q Consensus 216 -------~~~~qr~GR~gR~~~~~~~g~~~~~~~ 242 (269)
..|.|++||+||.+ ..|.+++...
T Consensus 517 ra~Er~~~~l~q~~GRagR~~---~~g~viiqT~ 547 (679)
T PRK05580 517 RASERTFQLLTQVAGRAGRAE---KPGEVLIQTY 547 (679)
T ss_pred chHHHHHHHHHHHHhhccCCC---CCCEEEEEeC
Confidence 46899999999987 7788886543
No 96
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=2.8e-18 Score=156.21 Aligned_cols=126 Identities=14% Similarity=0.176 Sum_probs=108.0
Q ss_pred ecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHH
Q 024287 103 CGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180 (269)
Q Consensus 103 ~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f 180 (269)
.+...|..++.+.+... .+.++||||+|+..+ +.+.+.|.+. +++...+|+.+...++..+.+.+
T Consensus 420 ~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~s----------e~ls~~L~~~---gi~~~~Lna~~~~~Ea~ii~~ag 486 (796)
T PRK12906 420 PTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESS----------ERLSHLLDEA---GIPHAVLNAKNHAKEAEIIMNAG 486 (796)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHH----------HHHHHHHHHC---CCCeeEecCCcHHHHHHHHHhcC
Confidence 34567888888888644 678999999999874 4578888877 78899999999988887777777
Q ss_pred hcCCccEEEEeccccccCCC---CCCC-----eEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhH
Q 024287 181 RQGGGYLLVSTDIAARGIDL---PETT-----HIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEEL 246 (269)
Q Consensus 181 ~~~~~~iLv~T~~~~~Gidi---~~~~-----~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~ 246 (269)
+.|. |+|||++++||.|| +++. +||+++.|.+...|.|+.||+||+| ..|.+.++++.+|.
T Consensus 487 ~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG---~~G~s~~~~sleD~ 555 (796)
T PRK12906 487 QRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQG---DPGSSRFYLSLEDD 555 (796)
T ss_pred CCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCC---CCcceEEEEeccch
Confidence 7666 99999999999999 4888 9999999999999999999999999 88999999886644
No 97
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.78 E-value=7.7e-18 Score=152.19 Aligned_cols=127 Identities=16% Similarity=0.221 Sum_probs=108.5
Q ss_pred cCcchHHHHHHHHhh--cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHh
Q 024287 104 GKKMKYQTLLSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181 (269)
Q Consensus 104 ~~~~k~~~l~~ll~~--~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~ 181 (269)
+..+|..++.+.+.. ..+.++||||+|+.. ++.+.+.|.+. +++...+|+. ..+|+..+..|.
T Consensus 386 t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~----------se~ls~~L~~~---gi~~~~Lna~--q~~rEa~ii~~a 450 (745)
T TIGR00963 386 TEEEKWKAVVDEIKERHAKGQPVLVGTTSVEK----------SELLSNLLKER---GIPHNVLNAK--NHEREAEIIAQA 450 (745)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH----------HHHHHHHHHHc---CCCeEEeeCC--hHHHHHHHHHhc
Confidence 445677777766633 357899999999986 44578888876 7888999998 778999999999
Q ss_pred cCCccEEEEeccccccCCCCC-------CCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHH
Q 024287 182 QGGGYLLVSTDIAARGIDLPE-------TTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFV 248 (269)
Q Consensus 182 ~~~~~iLv~T~~~~~Gidi~~-------~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~ 248 (269)
.+...|+|||++++||+||+. .-+||+++.|.+...|.||.||+||+| ..|.+.+|++.+|.-.
T Consensus 451 g~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG---~~G~s~~~ls~eD~l~ 521 (745)
T TIGR00963 451 GRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQG---DPGSSRFFLSLEDNLM 521 (745)
T ss_pred CCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCC---CCcceEEEEeccHHHH
Confidence 999999999999999999998 459999999999999999999999999 8899999998765543
No 98
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.76 E-value=1.2e-17 Score=146.32 Aligned_cols=210 Identities=16% Similarity=0.167 Sum_probs=141.0
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhc-cCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccC
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS-SCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPL 92 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~-~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (269)
.|++++++|+||||.= .-.-+.+.-+++++- ......+|++|||+.-. .+.++ |. +...+.+. ...
T Consensus 160 ~LskYsvIIlDEAHER---sl~TDiLlGlLKki~~~R~~LklIimSATlda~--kfS~y----F~--~a~i~~i~-GR~- 226 (674)
T KOG0922|consen 160 LLSKYSVIILDEAHER---SLHTDILLGLLKKILKKRPDLKLIIMSATLDAE--KFSEY----FN--NAPILTIP-GRT- 226 (674)
T ss_pred ccccccEEEEechhhh---hhHHHHHHHHHHHHHhcCCCceEEEEeeeecHH--HHHHH----hc--CCceEeec-CCC-
Confidence 6899999999999942 112233333443332 23567999999998632 12222 21 12222222 111
Q ss_pred CCcceeEEEEecCcc----hHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC--ceEEecc
Q 024287 93 PSCLHHRFVICGKKM----KYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS--DVLLLEE 166 (269)
Q Consensus 93 ~~~i~~~~~~~~~~~----k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~v~~~h~ 166 (269)
-.+...|...+..+ -+..+.++-...+++-++||....++.+.+ ++.+.+.... ...+. -+.++||
T Consensus 227 -fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~------~~~l~e~~~~-~~~~~~~~~lply~ 298 (674)
T KOG0922|consen 227 -FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAA------CELLRERAKS-LPEDCPELILPLYG 298 (674)
T ss_pred -CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH------HHHHHHHhhh-ccccCcceeeeecc
Confidence 12444555433332 344445555556678999999999987663 2333332222 12222 3678999
Q ss_pred cCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEec------------------CCCCccccccccccCCCC
Q 024287 167 EMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFD------------------LPRSAIDYLHRAGRTGRK 228 (269)
Q Consensus 167 ~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~------------------~p~~~~~~~qr~GR~gR~ 228 (269)
.++.+++..+.+.-..|.-+++++|++++..+.||++.+||+-+ .|.|.++-.||.|||||.
T Consensus 299 aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt 378 (674)
T KOG0922|consen 299 ALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRT 378 (674)
T ss_pred cCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCC
Confidence 99999999888887788899999999999999999999999755 355788889999999999
Q ss_pred CCCCCCeEEEEecCchhHHH
Q 024287 229 PFSDEKWTVTSIITSEELFV 248 (269)
Q Consensus 229 ~~~~~~g~~~~~~~~~~~~~ 248 (269)
+ .|.||-++++.+...
T Consensus 379 ~----pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 379 G----PGKCYRLYTESAYDK 394 (674)
T ss_pred C----CceEEEeeeHHHHhh
Confidence 4 899999999887754
No 99
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.75 E-value=2.6e-17 Score=152.60 Aligned_cols=231 Identities=19% Similarity=0.246 Sum_probs=153.4
Q ss_pred hhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeE
Q 024287 4 LCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVH 83 (269)
Q Consensus 4 l~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~ 83 (269)
|.+++..+...+..+..|||||+|.+-+.. .+...++.+-.++ ...|++++|||+|++.++-. |..... ..+..
T Consensus 216 LRnMlyrg~~~~~~i~~ViFDEvHyi~D~e-RG~VWEE~Ii~lP--~~v~~v~LSATv~N~~EF~~--Wi~~~~-~~~~~ 289 (1041)
T COG4581 216 LRNMLYRGSESLRDIEWVVFDEVHYIGDRE-RGVVWEEVIILLP--DHVRFVFLSATVPNAEEFAE--WIQRVH-SQPIH 289 (1041)
T ss_pred HHHHhccCcccccccceEEEEeeeeccccc-cchhHHHHHHhcC--CCCcEEEEeCCCCCHHHHHH--HHHhcc-CCCeE
Confidence 457888899999999999999999555444 5577777777765 78899999999999966432 222222 22222
Q ss_pred EeecCcccCCCcceeEEEEe-------cCcch-----------------------------------------------H
Q 024287 84 VHVNAIKPLPSCLHHRFVIC-------GKKMK-----------------------------------------------Y 109 (269)
Q Consensus 84 ~~~~~~~~~~~~i~~~~~~~-------~~~~k-----------------------------------------------~ 109 (269)
+...... +..+.++++.- +.+.+ .
T Consensus 290 vv~t~~R--pvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 367 (1041)
T COG4581 290 VVSTEHR--PVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGR 367 (1041)
T ss_pred EEeecCC--CCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccc
Confidence 2222222 22233333221 11110 0
Q ss_pred HHHHHHHhhcCCCceEEEeeccchhhhhcCCCCc--------hHH-HHHHHhhhcC------CCC-------------ce
Q 024287 110 QTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPS--------TTL-LVDFLSNSYK------GSS-------------DV 161 (269)
Q Consensus 110 ~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~--------~~~-~~~~l~~~~~------~~~-------------~v 161 (269)
..+...+.....-++|+|+-|+..|+..|..+.. .+. +...+.+... .++ .+
T Consensus 368 ~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGi 447 (1041)
T COG4581 368 PEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGI 447 (1041)
T ss_pred hHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhh
Confidence 1122223333445899999999999987633321 111 1111111100 011 14
Q ss_pred EEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEE----Eec----CCCCccccccccccCCCCCCCCC
Q 024287 162 LLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIY----NFD----LPRSAIDYLHRAGRTGRKPFSDE 233 (269)
Q Consensus 162 ~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi----~~~----~p~~~~~~~qr~GR~gR~~~~~~ 233 (269)
..||++|-+..|..+.+.|..|-.+|+++|.+++.|+|.|.-++|+ .+| -+-++..|.|+.||+||.|.+ .
T Consensus 448 avHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD-~ 526 (1041)
T COG4581 448 AVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLD-V 526 (1041)
T ss_pred hhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhcccccc-c
Confidence 5899999999999999999999999999999999999999888877 233 235789999999999999987 7
Q ss_pred CeEEEEecCc
Q 024287 234 KWTVTSIITS 243 (269)
Q Consensus 234 ~g~~~~~~~~ 243 (269)
.|.++....+
T Consensus 527 ~G~vI~~~~~ 536 (1041)
T COG4581 527 LGTVIVIEPP 536 (1041)
T ss_pred cceEEEecCC
Confidence 8988887543
No 100
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.75 E-value=3.6e-17 Score=143.66 Aligned_cols=107 Identities=20% Similarity=0.308 Sum_probs=88.3
Q ss_pred HHHHHHHHhhc-CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccE
Q 024287 109 YQTLLSLIQSD-APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYL 187 (269)
Q Consensus 109 ~~~l~~ll~~~-~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~i 187 (269)
...+..++... ...+++||+.+.+.+.. +...+... +. +..+.|..+..+|.++++.|+.|...+
T Consensus 270 ~~~~~~~~~~~~~~~~~lif~~~~~~a~~----------i~~~~~~~---~~-~~~it~~t~~~eR~~il~~fr~g~~~~ 335 (442)
T COG1061 270 IAAVRGLLLKHARGDKTLIFASDVEHAYE----------IAKLFLAP---GI-VEAITGETPKEEREAILERFRTGGIKV 335 (442)
T ss_pred HHHHHHHHHHhcCCCcEEEEeccHHHHHH----------HHHHhcCC---Cc-eEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 33444444444 46799999999886433 44444433 33 778999999999999999999999999
Q ss_pred EEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCC
Q 024287 188 LVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKP 229 (269)
Q Consensus 188 Lv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~ 229 (269)
||++.++.+|+|+|+++++|......|...|.||+||.-|..
T Consensus 336 lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~ 377 (442)
T COG1061 336 LVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPA 377 (442)
T ss_pred EEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCC
Confidence 999999999999999999999999999999999999999963
No 101
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.75 E-value=5.3e-17 Score=138.85 Aligned_cols=177 Identities=19% Similarity=0.219 Sum_probs=133.3
Q ss_pred CCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhh--cCCCceEEE
Q 024287 50 NNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS--DAPESGIIF 127 (269)
Q Consensus 50 ~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF 127 (269)
...|++++|||..+... .......+..-+.+.+.....+.- -+.....+.|..-++. ..+.+++|-
T Consensus 385 ~~~q~i~VSATPg~~E~--------e~s~~~vveQiIRPTGLlDP~iev----Rp~~~QvdDL~~EI~~r~~~~eRvLVT 452 (663)
T COG0556 385 KIPQTIYVSATPGDYEL--------EQSGGNVVEQIIRPTGLLDPEIEV----RPTKGQVDDLLSEIRKRVAKNERVLVT 452 (663)
T ss_pred hcCCEEEEECCCChHHH--------HhccCceeEEeecCCCCCCCceee----ecCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 35899999999766422 122223334344444432222222 2333445555554443 245899999
Q ss_pred eeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEE
Q 024287 128 VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIY 207 (269)
Q Consensus 128 ~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi 207 (269)
+-|++.|+. +.++|.+. ++++..+||+..--+|.+++.+++.|.+.|||..+.+-+|+|+|.|.+|.
T Consensus 453 tLTKkmAEd----------LT~Yl~e~---gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVA 519 (663)
T COG0556 453 TLTKKMAED----------LTEYLKEL---GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA 519 (663)
T ss_pred eehHHHHHH----------HHHHHHhc---CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEE
Confidence 999998665 88999988 89999999999999999999999999999999999999999999999999
Q ss_pred Eec-----CCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHHHHH
Q 024287 208 NFD-----LPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYENE 255 (269)
Q Consensus 208 ~~~-----~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 255 (269)
.+| +..|..+.+|-+|||+|. ..|.++...+.-...+.+.+.+.
T Consensus 520 IlDADKeGFLRse~SLIQtIGRAARN----~~GkvIlYAD~iT~sM~~Ai~ET 568 (663)
T COG0556 520 ILDADKEGFLRSERSLIQTIGRAARN----VNGKVILYADKITDSMQKAIDET 568 (663)
T ss_pred EeecCccccccccchHHHHHHHHhhc----cCCeEEEEchhhhHHHHHHHHHH
Confidence 887 567999999999999999 68999998887665555555443
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.74 E-value=1.2e-17 Score=154.98 Aligned_cols=201 Identities=16% Similarity=0.203 Sum_probs=128.1
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCCC-cce
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPS-CLH 97 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~ 97 (269)
+++|+||+|.+.+.. ....+..++..+. ..+..++++|||+|+........ .................... .+.
T Consensus 340 S~vIlDE~h~~~~~~-~~~~l~~~i~~l~-~~g~~ill~SATlP~~~~~~l~~---~~~~~~~~~~~~~~~~~~~e~~~~ 414 (733)
T COG1203 340 SLVILDEVHLYADET-MLAALLALLEALA-EAGVPVLLMSATLPPFLKEKLKK---ALGKGREVVENAKFCPKEDEPGLK 414 (733)
T ss_pred hchhhccHHhhcccc-hHHHHHHHHHHHH-hCCCCEEEEecCCCHHHHHHHHH---HHhcccceeccccccccccccccc
Confidence 589999999666553 4566666666653 47899999999999975544322 22212222211110000000 000
Q ss_pred eEEEEecCcchH--HHHHHHHh-hcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHH
Q 024287 98 HRFVICGKKMKY--QTLLSLIQ-SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174 (269)
Q Consensus 98 ~~~~~~~~~~k~--~~l~~ll~-~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~ 174 (269)
+. ...+..+.. ........ ...+.+++|.|||++.| .++++.|++... ++..+||.+...+|.
T Consensus 415 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~A----------ie~Y~~Lk~~~~---~v~LlHSRf~~~dR~ 480 (733)
T COG1203 415 RK-ERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRA----------IELYEKLKEKGP---KVLLLHSRFTLKDRE 480 (733)
T ss_pred cc-cchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHH----------HHHHHHHHhcCC---CEEEEecccchhhHH
Confidence 10 001111110 11111111 22468999999999874 448888888733 699999999999998
Q ss_pred HHHHHHh----cCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecC
Q 024287 175 ASLLEVR----QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIIT 242 (269)
Q Consensus 175 ~~~~~f~----~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~ 242 (269)
+.++.++ .+...|+|+|++.+.|+|+. .+++|-= +.+..+.+||+||++|.|.. ..|.++.+..
T Consensus 481 ~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~-~~~~~~v~~~ 548 (733)
T COG1203 481 EKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKK-ENGKIYVYND 548 (733)
T ss_pred HHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccc-cCCceeEeec
Confidence 8887654 45688999999999999985 5666533 56688999999999999854 4565555543
No 103
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=8.9e-17 Score=147.77 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=108.7
Q ss_pred EecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHH
Q 024287 102 ICGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179 (269)
Q Consensus 102 ~~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~ 179 (269)
..+...|..++.+.+... .+.++||||+|++. +..+...|... +++...+|+ .+.+|++.+..
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~----------sE~Ls~~L~~~---gI~h~vLna--kq~~REa~Iia 641 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEV----------SETLSRMLRAK---RIAHNVLNA--KQHDREAEIVA 641 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHH----------HHHHHHHHHHc---CCCceeecC--CHHHhHHHHHH
Confidence 345567999999998654 67899999999886 44577888777 788889997 57789999999
Q ss_pred HhcCCccEEEEeccccccCCCC---CCC-----eEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHH
Q 024287 180 VRQGGGYLLVSTDIAARGIDLP---ETT-----HIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELF 247 (269)
Q Consensus 180 f~~~~~~iLv~T~~~~~Gidi~---~~~-----~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~ 247 (269)
|..+...|+|||++++||+||+ .|. +||+.+.|.+...|.||.||+||+| ..|.+.+|++.+|.-
T Consensus 642 ~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqG---dpGsS~ffvSleD~L 714 (1025)
T PRK12900 642 EAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQG---DPGESVFYVSLEDEL 714 (1025)
T ss_pred hcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCC---CCcceEEEechhHHH
Confidence 9999999999999999999999 443 4588889999999999999999999 889999999976654
No 104
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.68 E-value=1.7e-16 Score=106.85 Aligned_cols=80 Identities=34% Similarity=0.544 Sum_probs=74.1
Q ss_pred HHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCC
Q 024287 147 LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTG 226 (269)
Q Consensus 147 ~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~g 226 (269)
+.+.|.+. +..+..+||+|++.+|..+++.|.++...+|++|+.+++|+|+|.++.||.++.|.+..+|.|++||++
T Consensus 3 l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 3 LAELLKEL---GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHC---CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 45556655 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 024287 227 RKP 229 (269)
Q Consensus 227 R~~ 229 (269)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 975
No 105
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=1.9e-15 Score=132.15 Aligned_cols=215 Identities=15% Similarity=0.137 Sum_probs=142.4
Q ss_pred ceecCcccEEEEeccccccCCchhhhHHHHHHhhh-ccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcc
Q 024287 12 IFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASY-SSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIK 90 (269)
Q Consensus 12 ~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~-~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (269)
..+|++.+++||||||.- .-+...+..++..+ +..+...+++.|||+... + | ..+.+. ..++.-+..
T Consensus 373 epdLasYSViiiDEAHER---TL~TDILfgLvKDIar~RpdLKllIsSAT~DAe-k-----F-S~fFDd--apIF~iPGR 440 (902)
T KOG0923|consen 373 EPDLASYSVIIVDEAHER---TLHTDILFGLVKDIARFRPDLKLLISSATMDAE-K-----F-SAFFDD--APIFRIPGR 440 (902)
T ss_pred cccccceeEEEeehhhhh---hhhhhHHHHHHHHHHhhCCcceEEeeccccCHH-H-----H-HHhccC--CcEEeccCc
Confidence 458999999999999942 11223333333322 234789999999998542 1 1 112111 122222222
Q ss_pred cCCCcceeEEEEecCcchHHHH-HHHHh---hcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecc
Q 024287 91 PLPSCLHHRFVICGKKMKYQTL-LSLIQ---SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEE 166 (269)
Q Consensus 91 ~~~~~i~~~~~~~~~~~k~~~l-~~ll~---~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~ 166 (269)
..| +..+|-..+..+-+++. ..+++ ..+.+-+|||....++.+.+.+++ ......|-... ..+-+.++|+
T Consensus 441 RyP--Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l---~~~~~~LGski-~eliv~PiYa 514 (902)
T KOG0923|consen 441 RYP--VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENL---KERCRRLGSKI-RELIVLPIYA 514 (902)
T ss_pred ccc--eeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHH---HHHHHHhcccc-ceEEEeeccc
Confidence 222 55666666665544433 33333 335678999999988766532111 11222222222 2356899999
Q ss_pred cCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEec------------------CCCCccccccccccCCCC
Q 024287 167 EMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFD------------------LPRSAIDYLHRAGRTGRK 228 (269)
Q Consensus 167 ~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~------------------~p~~~~~~~qr~GR~gR~ 228 (269)
++|...+..+++---.|--+|+++|++++..+.|+++.+||+-+ .|.+.++-.||+||+||.
T Consensus 515 NLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRt 594 (902)
T KOG0923|consen 515 NLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRT 594 (902)
T ss_pred cCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCC
Confidence 99999998888776677789999999999999999999999755 356788889999999999
Q ss_pred CCCCCCeEEEEecCchhHHH
Q 024287 229 PFSDEKWTVTSIITSEELFV 248 (269)
Q Consensus 229 ~~~~~~g~~~~~~~~~~~~~ 248 (269)
| .|.|+-+++.+.+..
T Consensus 595 g----PGKCfRLYt~~aY~~ 610 (902)
T KOG0923|consen 595 G----PGKCFRLYTAWAYEH 610 (902)
T ss_pred C----CCceEEeechhhhhh
Confidence 6 899999999776544
No 106
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.64 E-value=7.3e-16 Score=141.64 Aligned_cols=242 Identities=17% Similarity=0.208 Sum_probs=151.5
Q ss_pred chhhHHHHhCceecCcccEEEEeccccccCC-chhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNS-SKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 2 grl~~~l~~~~~~l~~~~~lViDE~~~l~~~-~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
|-|++.|.. .-.+.++.++|+||+|.=--. .+.+-.++.++.. .++.++|+||||+..+ . +-..|++.+
T Consensus 273 GvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~---~p~LkvILMSAT~dae--~----fs~YF~~~p 342 (924)
T KOG0920|consen 273 GVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPR---NPDLKVILMSATLDAE--L----FSDYFGGCP 342 (924)
T ss_pred HHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhh---CCCceEEEeeeecchH--H----HHHHhCCCc
Confidence 556777776 447899999999999953322 3333333333333 4899999999998633 1 112222222
Q ss_pred eeEEeecCccc--------------CCCcceeE------------EEEecCcchHHHHHHHHhh----cCCCceEEEeec
Q 024287 81 VVHVHVNAIKP--------------LPSCLHHR------------FVICGKKMKYQTLLSLIQS----DAPESGIIFVGE 130 (269)
Q Consensus 81 ~~~~~~~~~~~--------------~~~~i~~~------------~~~~~~~~k~~~l~~ll~~----~~~~~~lIF~~s 130 (269)
...+....... ......++ ......+...+.+.+++.. ...+.+|||.+.
T Consensus 343 vi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG 422 (924)
T KOG0920|consen 343 VITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPG 422 (924)
T ss_pred eEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCC
Confidence 22222111000 00000000 0001122344555555542 246889999999
Q ss_pred cchhhhhcCCCCchHHHHHHHhhh--cCC--CCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeE
Q 024287 131 QSEKSKKAGNAPSTTLLVDFLSNS--YKG--SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHI 206 (269)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~--~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~V 206 (269)
.++... +.+.|... +.+ .+.+.++||.|+..++..+...--.|..+|+++|++++..|.|+++-+|
T Consensus 423 ~~eI~~----------~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyV 492 (924)
T KOG0920|consen 423 WEEILQ----------LKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYV 492 (924)
T ss_pred HHHHHH----------HHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEE
Confidence 886443 55555432 112 3568999999999999999888888889999999999999999999999
Q ss_pred EEec--------CCC----------CccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHHHHHhcCcccccccccc
Q 024287 207 YNFD--------LPR----------SAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYENELKFKSEELTLQTQ 268 (269)
Q Consensus 207 i~~~--------~p~----------~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (269)
|+.+ .-. +.+.-.||.||+||. ..|.||.+++......+- ...--.++...|+++.
T Consensus 493 IDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv----~~G~cy~L~~~~~~~~~~--~~~q~PEilR~pL~~l 566 (924)
T KOG0920|consen 493 IDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV----RPGICYHLYTRSRYEKLM--LAYQLPEILRTPLEEL 566 (924)
T ss_pred EecCeeeeeeecccCCcchhheeeccccchHHhcccccCc----cCCeeEEeechhhhhhcc--cccCChHHHhChHHHh
Confidence 9754 221 455567999999999 799999999976555431 1122344445555554
Q ss_pred C
Q 024287 269 C 269 (269)
Q Consensus 269 ~ 269 (269)
|
T Consensus 567 ~ 567 (924)
T KOG0920|consen 567 C 567 (924)
T ss_pred h
Confidence 4
No 107
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.64 E-value=1.1e-14 Score=139.41 Aligned_cols=115 Identities=17% Similarity=0.275 Sum_probs=84.8
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC--CCceEEecccCChhHHHHHHHHHhcCCc-cEEEEeccccc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG--SSDVLLLEEEMNFNSRAASLLEVRQGGG-YLLVSTDIAAR 196 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~v~~~h~~~~~~~r~~~~~~f~~~~~-~iLv~T~~~~~ 196 (269)
.++++||||.+++-|+.+ +..+.+.+...+++ +..+..+||+++ ++.+++++|+++.. +|+|+++++..
T Consensus 697 ~~~KtiIF~~s~~HA~~i------~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~T 768 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMV------VRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTT 768 (1123)
T ss_pred CCCcEEEEEcCHHHHHHH------HHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEeccccc
Confidence 457999999998866553 12222222222221 224567889886 46779999999876 69999999999
Q ss_pred cCCCCCCCeEEEecCCCCccccccccccCCCCCC--CCCCeEEEEecC
Q 024287 197 GIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF--SDEKWTVTSIIT 242 (269)
Q Consensus 197 Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~--~~~~g~~~~~~~ 242 (269)
|+|+|.+++||.++.+.|...|.||+||+.|... +...+.++-++.
T Consensus 769 G~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~vg 816 (1123)
T PRK11448 769 GIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAVD 816 (1123)
T ss_pred CCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehHH
Confidence 9999999999999999999999999999999863 123344554443
No 108
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.60 E-value=4.8e-14 Score=133.00 Aligned_cols=134 Identities=19% Similarity=0.130 Sum_probs=104.3
Q ss_pred hHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcC--
Q 024287 108 KYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQG-- 183 (269)
Q Consensus 108 k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~-- 183 (269)
|...+..++... .+.++|||+..... ...+.++|... ++.+..+||+++..+|.++++.|...
T Consensus 472 Kl~lLdkLL~~Lk~~g~KVLIFSQft~~----------LdiLed~L~~~---g~~y~rIdGsts~~eRq~~Id~Fn~~~s 538 (1033)
T PLN03142 472 KMVLLDKLLPKLKERDSRVLIFSQMTRL----------LDILEDYLMYR---GYQYCRIDGNTGGEDRDASIDAFNKPGS 538 (1033)
T ss_pred HHHHHHHHHHHHHhcCCeEEeehhHHHH----------HHHHHHHHHHc---CCcEEEECCCCCHHHHHHHHHHhccccC
Confidence 445555555433 35799999987653 44566666654 67889999999999999999999753
Q ss_pred -CccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchh--HHHHHHHHHH
Q 024287 184 -GGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEE--LFVLQRYENE 255 (269)
Q Consensus 184 -~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~--~~~~~~~~~~ 255 (269)
...+|++|.+++.|+|+..+++||+||.|+++....|+.||+-|.|+. +.-.+|.|++.+. ...+....+.
T Consensus 539 ~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQk-k~V~VyRLIt~gTIEEkIlera~~K 612 (1033)
T PLN03142 539 EKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQK-KEVQVFRFCTEYTIEEKVIERAYKK 612 (1033)
T ss_pred CceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCC-ceEEEEEEEeCCcHHHHHHHHHHHH
Confidence 245789999999999999999999999999999999999999999965 4566778887753 3444443333
No 109
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.59 E-value=2.8e-14 Score=125.37 Aligned_cols=208 Identities=17% Similarity=0.210 Sum_probs=142.1
Q ss_pred eecCcccEEEEeccccccCCchhhhHHHHHHhhh-ccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCccc
Q 024287 13 FKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASY-SSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKP 91 (269)
Q Consensus 13 ~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~-~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 91 (269)
-+|.+.+++|+||||.-.- +...+.-+++.. ....+..+|.+|||+.-. . +-..|+ +...+.+. ...
T Consensus 464 ~~L~kYSviImDEAHERsl---NtDilfGllk~~larRrdlKliVtSATm~a~--k----f~nfFg--n~p~f~Ip-GRT 531 (1042)
T KOG0924|consen 464 RDLDKYSVIIMDEAHERSL---NTDILFGLLKKVLARRRDLKLIVTSATMDAQ--K----FSNFFG--NCPQFTIP-GRT 531 (1042)
T ss_pred hhhhheeEEEechhhhccc---chHHHHHHHHHHHHhhccceEEEeeccccHH--H----HHHHhC--CCceeeec-CCc
Confidence 3688999999999995322 223333333322 123689999999998632 1 212222 22222221 112
Q ss_pred CCCcceeEEEEecCcchHH-HHHHHHhh---cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC---CCceEEe
Q 024287 92 LPSCLHHRFVICGKKMKYQ-TLLSLIQS---DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG---SSDVLLL 164 (269)
Q Consensus 92 ~~~~i~~~~~~~~~~~k~~-~l~~ll~~---~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~v~~~ 164 (269)
.| +...|...+.++-.+ ++.+.++- ..++-++||....+..+.+ +..+.+.|.+.... .+.+.++
T Consensus 532 yP--V~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t------~~~i~~~l~ql~~~~~~~L~vlpi 603 (1042)
T KOG0924|consen 532 YP--VEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECT------CDIIKEKLEQLDSAPTTDLAVLPI 603 (1042)
T ss_pred cc--eEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHH------HHHHHHHHHhhhcCCCCceEEEee
Confidence 22 344444444444333 33444432 2457899999998876663 55666666655542 4679999
Q ss_pred cccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEec------------------CCCCccccccccccCC
Q 024287 165 EEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFD------------------LPRSAIDYLHRAGRTG 226 (269)
Q Consensus 165 h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~------------------~p~~~~~~~qr~GR~g 226 (269)
++.+|..-+.+++..-..|.-+++|+|++++..+.+|++.+||+.+ .|.|-+.--||.||||
T Consensus 604 YSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAG 683 (1042)
T KOG0924|consen 604 YSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAG 683 (1042)
T ss_pred hhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccC
Confidence 9999999988888877788899999999999999999999999865 4667788889999999
Q ss_pred CCCCCCCCeEEEEecCch
Q 024287 227 RKPFSDEKWTVTSIITSE 244 (269)
Q Consensus 227 R~~~~~~~g~~~~~~~~~ 244 (269)
|-| .|.||-++++.
T Consensus 684 Rt~----pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 684 RTG----PGTCYRLYTED 697 (1042)
T ss_pred CCC----Ccceeeehhhh
Confidence 995 89999999874
No 110
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.59 E-value=2.3e-14 Score=123.78 Aligned_cols=237 Identities=13% Similarity=0.121 Sum_probs=151.9
Q ss_pred cccEEEEeccccccCC-chh----hhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCccc
Q 024287 17 SVQVLVIDEVDFLFNS-SKQ----VSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKP 91 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~-~~~----~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 91 (269)
...++++||+|-+... +.. +..+..+..-.-.+.+.|++-.|||+........+.+ .+ ..+..-.+..
T Consensus 412 ~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~--~~-----~E~~Li~~DG 484 (1034)
T KOG4150|consen 412 EELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELA--NL-----SELELVTIDG 484 (1034)
T ss_pred HHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhc--CC-----cceEEEEecC
Confidence 3468899999944322 222 2222222222224578999999999988766443322 11 1122222223
Q ss_pred CCCcceeEEEEecC---------cchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC-CC
Q 024287 92 LPSCLHHRFVICGK---------KMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG-SS 159 (269)
Q Consensus 92 ~~~~i~~~~~~~~~---------~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 159 (269)
.|..-.+.++.-+. +++......++.+. .+-++|-||.+++.|+-+ .....+.+.+-.+. -.
T Consensus 485 SPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~------~~~~R~I~~ET~~~LV~ 558 (1034)
T KOG4150|consen 485 SPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELV------LCLTREILAETAPHLVE 558 (1034)
T ss_pred CCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHH------HHHHHHHHHHhhHHHHH
Confidence 34444555554321 23333333444332 356999999999977664 22222222222110 01
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEE
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~ 239 (269)
.+..+.|+.+.++|.++..+...|+..-+|+|++++.|||+.+.+-|++.++|.+.+.+.|++||+||...+ .-...+.
T Consensus 559 ~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~-SLavyva 637 (1034)
T KOG4150|consen 559 AITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP-SLAVYVA 637 (1034)
T ss_pred HHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC-ceEEEEE
Confidence 356788999999999999999999999999999999999999999999999999999999999999999743 3344445
Q ss_pred ecCchhHHHHHHHHHHhcCccccccccc
Q 024287 240 IITSEELFVLQRYENELKFKSEELTLQT 267 (269)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (269)
+..|-|..++..=...++..=.++.++.
T Consensus 638 ~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~ 665 (1034)
T KOG4150|consen 638 FLGPVDQYYMSHPDKLFGSPNEELHLDS 665 (1034)
T ss_pred eccchhhHhhcCcHHHhCCCcceeEEec
Confidence 5556677776666666665555555543
No 111
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=6.6e-14 Score=124.89 Aligned_cols=79 Identities=23% Similarity=0.272 Sum_probs=63.6
Q ss_pred eEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCC--------C----------Ccccccccc
Q 024287 161 VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLP--------R----------SAIDYLHRA 222 (269)
Q Consensus 161 v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p--------~----------~~~~~~qr~ 222 (269)
|.+++|=++...+..++..--.|.--|+|+|++++..+.||++.+||+.+.- . |.++--||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 5666777777777777777677877899999999999999999999986522 2 445556999
Q ss_pred ccCCCCCCCCCCeEEEEecCc
Q 024287 223 GRTGRKPFSDEKWTVTSIITS 243 (269)
Q Consensus 223 GR~gR~~~~~~~g~~~~~~~~ 243 (269)
|||||-| .|+||-+++.
T Consensus 687 GRAGRtg----pGHcYRLYSS 703 (1172)
T KOG0926|consen 687 GRAGRTG----PGHCYRLYSS 703 (1172)
T ss_pred cccCCCC----CCceeehhhh
Confidence 9999996 8999999875
No 112
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=8.3e-13 Score=121.38 Aligned_cols=127 Identities=17% Similarity=0.227 Sum_probs=104.4
Q ss_pred EEecCcchHHHHHHHHhh--cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHH
Q 024287 101 VICGKKMKYQTLLSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178 (269)
Q Consensus 101 ~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~ 178 (269)
+..+..+|..++...+.. ..+.++||||+|++.+ ..+.+.|.+. +++...+|+. ..+|+..+.
T Consensus 408 i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~s----------e~Ls~~L~~~---gi~~~vLnak--q~eREa~Ii 472 (830)
T PRK12904 408 IYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKS----------ELLSKLLKKA---GIPHNVLNAK--NHEREAEII 472 (830)
T ss_pred EEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH----------HHHHHHHHHC---CCceEeccCc--hHHHHHHHH
Confidence 334566789999988866 5678999999999874 4478888776 7889999996 778999999
Q ss_pred HHhcCCccEEEEeccccccCCCCCC--------------------------------------CeEEEecCCCCcccccc
Q 024287 179 EVRQGGGYLLVSTDIAARGIDLPET--------------------------------------THIYNFDLPRSAIDYLH 220 (269)
Q Consensus 179 ~f~~~~~~iLv~T~~~~~Gidi~~~--------------------------------------~~Vi~~~~p~~~~~~~q 220 (269)
.|+.+...|+|||++++||+||+-- =+||-...|.|..-=-|
T Consensus 473 a~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~Q 552 (830)
T PRK12904 473 AQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQ 552 (830)
T ss_pred HhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHH
Confidence 9999999999999999999998753 25777777778877889
Q ss_pred ccccCCCCCCCCCCeEEEEecCchh
Q 024287 221 RAGRTGRKPFSDEKWTVTSIITSEE 245 (269)
Q Consensus 221 r~GR~gR~~~~~~~g~~~~~~~~~~ 245 (269)
-.||+||+| ..|.+-+|++-+|
T Consensus 553 lrGRagRQG---dpGss~f~lSleD 574 (830)
T PRK12904 553 LRGRSGRQG---DPGSSRFYLSLED 574 (830)
T ss_pred hhcccccCC---CCCceeEEEEcCc
Confidence 999999999 7788887777543
No 113
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.45 E-value=5.1e-13 Score=121.52 Aligned_cols=82 Identities=26% Similarity=0.341 Sum_probs=71.9
Q ss_pred eEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEec-CCCCccccccccccCCCCCCCCCCeEEEE
Q 024287 161 VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFD-LPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239 (269)
Q Consensus 161 v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~-~p~~~~~~~qr~GR~gR~~~~~~~g~~~~ 239 (269)
++.+|++|+...|..++-.|+.|...||++|..++.|||.|=-++|+--| +--++-.|.|++|||||.|.+ .-|.+++
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD-~lGnV~F 1043 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFD-TLGNVVF 1043 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccc-cccceEE
Confidence 68899999999999999999999999999999999999999777777666 345788999999999999998 6777776
Q ss_pred ecCc
Q 024287 240 IITS 243 (269)
Q Consensus 240 ~~~~ 243 (269)
+--|
T Consensus 1044 mgiP 1047 (1330)
T KOG0949|consen 1044 MGIP 1047 (1330)
T ss_pred EeCc
Confidence 6444
No 114
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.41 E-value=8.3e-12 Score=107.76 Aligned_cols=197 Identities=18% Similarity=0.196 Sum_probs=126.6
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCCCcc
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCL 96 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (269)
.+++.||||++.|-+....|.+...++.... ....+. . .+.+-.+...+.+. .+.+..+-.
T Consensus 275 ~yeVAViDEIQmm~Dp~RGwAWTrALLGl~A--dEiHLC---G--epsvldlV~~i~k~-TGd~vev~~----------- 335 (700)
T KOG0953|consen 275 PYEVAVIDEIQMMRDPSRGWAWTRALLGLAA--DEIHLC---G--EPSVLDLVRKILKM-TGDDVEVRE----------- 335 (700)
T ss_pred ceEEEEehhHHhhcCcccchHHHHHHHhhhh--hhhhcc---C--CchHHHHHHHHHhh-cCCeeEEEe-----------
Confidence 3579999999977776666777788776532 111111 1 12222333333221 111221111
Q ss_pred eeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHH
Q 024287 97 HHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAAS 176 (269)
Q Consensus 97 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~ 176 (269)
|-......-.+.+..-+...+++-+||-++.++ .-.+...+.+. .+..+..++|++|++.|.+-
T Consensus 336 ---YeRl~pL~v~~~~~~sl~nlk~GDCvV~FSkk~-----------I~~~k~kIE~~--g~~k~aVIYGsLPPeTr~aQ 399 (700)
T KOG0953|consen 336 ---YERLSPLVVEETALGSLSNLKPGDCVVAFSKKD-----------IFTVKKKIEKA--GNHKCAVIYGSLPPETRLAQ 399 (700)
T ss_pred ---ecccCcceehhhhhhhhccCCCCCeEEEeehhh-----------HHHHHHHHHHh--cCcceEEEecCCCCchhHHH
Confidence 222222223335666666777777777665544 34455666655 33458999999999999999
Q ss_pred HHHHhc--CCccEEEEeccccccCCCCCCCeEEEecC---------CCCccccccccccCCCCCCCCCCeEEEEecCchh
Q 024287 177 LLEVRQ--GGGYLLVSTDIAARGIDLPETTHIYNFDL---------PRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEE 245 (269)
Q Consensus 177 ~~~f~~--~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~---------p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~ 245 (269)
...|.+ ++..|||+||++++|+|+ +++.||.+++ |-+..+..|-+|||||.|..-..|.+.++-. .|
T Consensus 400 A~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~-eD 477 (700)
T KOG0953|consen 400 AALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS-ED 477 (700)
T ss_pred HHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH-hh
Confidence 999998 779999999999999998 6888888774 3456777899999999985445676666554 44
Q ss_pred HHHHH
Q 024287 246 LFVLQ 250 (269)
Q Consensus 246 ~~~~~ 250 (269)
...+.
T Consensus 478 L~~L~ 482 (700)
T KOG0953|consen 478 LKLLK 482 (700)
T ss_pred HHHHH
Confidence 44433
No 115
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=9.4e-12 Score=114.83 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=100.9
Q ss_pred EEecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHH
Q 024287 101 VICGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178 (269)
Q Consensus 101 ~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~ 178 (269)
+..+...|..++.+.+... .+.++||||+|++. .+.+.+.|.+. +++...+|+.+...+++.+.+
T Consensus 422 v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~----------sE~ls~~L~~~---gi~h~vLnak~~q~Ea~iia~ 488 (896)
T PRK13104 422 VYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEA----------SEFLSQLLKKE---NIKHQVLNAKFHEKEAQIIAE 488 (896)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH----------HHHHHHHHHHc---CCCeEeecCCCChHHHHHHHh
Confidence 3345567888887777543 57899999999987 45588888887 789999999999999999999
Q ss_pred HHhcCCccEEEEeccccccCCCCCC--------------------------------------CeEEEecCCCCcccccc
Q 024287 179 EVRQGGGYLLVSTDIAARGIDLPET--------------------------------------THIYNFDLPRSAIDYLH 220 (269)
Q Consensus 179 ~f~~~~~~iLv~T~~~~~Gidi~~~--------------------------------------~~Vi~~~~p~~~~~~~q 220 (269)
.|+.| .|+|||++++||+||.-- =+||--..+.|..-=-|
T Consensus 489 Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~Q 566 (896)
T PRK13104 489 AGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQ 566 (896)
T ss_pred CCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHH
Confidence 99999 499999999999998521 14555555666666678
Q ss_pred ccccCCCCCCCCCCeEEEEecCchhH
Q 024287 221 RAGRTGRKPFSDEKWTVTSIITSEEL 246 (269)
Q Consensus 221 r~GR~gR~~~~~~~g~~~~~~~~~~~ 246 (269)
-.||+||+| ..|.+-+|++-+|.
T Consensus 567 LrGRaGRQG---DPGss~f~lSleD~ 589 (896)
T PRK13104 567 LRGRAGRQG---DPGSSRFYLSLEDN 589 (896)
T ss_pred hccccccCC---CCCceEEEEEcCcH
Confidence 899999999 77888877774443
No 116
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.38 E-value=6.6e-11 Score=102.15 Aligned_cols=226 Identities=15% Similarity=0.157 Sum_probs=160.5
Q ss_pred ceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCC----------------------CccEEEEeccCCchhhHHH
Q 024287 12 IFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCN----------------------NRQTVFASASIPQHRRFLH 69 (269)
Q Consensus 12 ~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~----------------------~~q~i~~SATl~~~~~~l~ 69 (269)
...||++.++|+|.+|.++ .+ +|.++..+++.+...+ -+|++++|+...+.+..+.
T Consensus 156 ~DFLSSIEv~iiD~ad~l~-MQ-NW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf 233 (442)
T PF06862_consen 156 YDFLSSIEVLIIDQADVLL-MQ-NWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLF 233 (442)
T ss_pred cchhheeeeEeechhhHHH-Hh-hHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHH
Confidence 3479999999999999554 44 6888888888775211 2999999999999888776
Q ss_pred HHHhhhcccCceeEEeecC---cccCCCcceeEEEEecC-------cchHHHHHH----HHh-hcCCCceEEEeeccchh
Q 024287 70 NCIQQKWTKSDVVHVHVNA---IKPLPSCLHHRFVICGK-------KMKYQTLLS----LIQ-SDAPESGIIFVGEQSEK 134 (269)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~-------~~k~~~l~~----ll~-~~~~~~~lIF~~s~~~~ 134 (269)
...-.++.+.-........ .......++|.+...+. +.+++.... .+. ....++++||++|--.
T Consensus 234 ~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfD- 312 (442)
T PF06862_consen 234 NRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFD- 312 (442)
T ss_pred HhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhh-
Confidence 6533333322222222221 12455567888876442 234443322 223 3445799999999653
Q ss_pred hhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecccc--ccCCCCCCCeEEEecCC
Q 024287 135 SKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAA--RGIDLPETTHIYNFDLP 212 (269)
Q Consensus 135 ~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~--~Gidi~~~~~Vi~~~~p 212 (269)
-..+-++|.+. +.....+|...+..+-......|..|+.++|+.|.=+- +-..+.++..||.|++|
T Consensus 313 ---------fVRlRN~lk~~---~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P 380 (442)
T PF06862_consen 313 ---------FVRLRNYLKKE---NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPP 380 (442)
T ss_pred ---------hHHHHHHHHhc---CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCC
Confidence 45567777755 77888999999999999999999999999999999653 55778899999999999
Q ss_pred CCccccccccccCCCCCC---CCCCeEEEEecCchhHHHHHHH
Q 024287 213 RSAIDYLHRAGRTGRKPF---SDEKWTVTSIITSEELFVLQRY 252 (269)
Q Consensus 213 ~~~~~~~qr~GR~gR~~~---~~~~g~~~~~~~~~~~~~~~~~ 252 (269)
..+.-|...++-.+.... +.....|..+++..|...++++
T Consensus 381 ~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 381 ENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred CChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 999988777655444431 1135689999999998886655
No 117
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=2.6e-11 Score=111.78 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=100.6
Q ss_pred ecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHH
Q 024287 103 CGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180 (269)
Q Consensus 103 ~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f 180 (269)
.....|..++.+-+... .+.++||||+|+.. .+.++..|.+. +++...+|+.++..++..+.+.|
T Consensus 429 ~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~----------se~ls~~L~~~---gi~~~vLnak~~~~Ea~ii~~Ag 495 (908)
T PRK13107 429 LTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQ----------SELLARLMVKE---KIPHEVLNAKFHEREAEIVAQAG 495 (908)
T ss_pred eCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH----------HHHHHHHHHHC---CCCeEeccCcccHHHHHHHHhCC
Confidence 34567777777766543 57899999999986 44477788776 78889999999999999999999
Q ss_pred hcCCccEEEEeccccccCCCCCC-------------------------------------CeEEEecCCCCccccccccc
Q 024287 181 RQGGGYLLVSTDIAARGIDLPET-------------------------------------THIYNFDLPRSAIDYLHRAG 223 (269)
Q Consensus 181 ~~~~~~iLv~T~~~~~Gidi~~~-------------------------------------~~Vi~~~~p~~~~~~~qr~G 223 (269)
+.|. |+|||++++||.||.-- =+||-...+.|..-=-|-.|
T Consensus 496 ~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrG 573 (908)
T PRK13107 496 RTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRG 573 (908)
T ss_pred CCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhc
Confidence 9988 99999999999998521 25666666666666678899
Q ss_pred cCCCCCCCCCCeEEEEecCchhH
Q 024287 224 RTGRKPFSDEKWTVTSIITSEEL 246 (269)
Q Consensus 224 R~gR~~~~~~~g~~~~~~~~~~~ 246 (269)
|+||+| ..|.+-+|++-+|.
T Consensus 574 RaGRQG---DPGss~f~lSlED~ 593 (908)
T PRK13107 574 RAGRQG---DAGSSRFYLSMEDS 593 (908)
T ss_pred ccccCC---CCCceeEEEEeCcH
Confidence 999999 77888888875444
No 118
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.33 E-value=1.4e-11 Score=104.85 Aligned_cols=203 Identities=17% Similarity=0.211 Sum_probs=131.4
Q ss_pred ecCcccEEEEecccc-ccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccC
Q 024287 14 KLESVQVLVIDEVDF-LFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPL 92 (269)
Q Consensus 14 ~l~~~~~lViDE~~~-l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (269)
.++..+++|+||||. -++....+..+++++.. .+...++.+|||+-. ..+...|. +...+.+.. .
T Consensus 156 ~l~~y~viiLDeahERtlATDiLmGllk~v~~~---rpdLk~vvmSatl~a------~Kfq~yf~--n~Pll~vpg--~- 221 (699)
T KOG0925|consen 156 LLGRYGVIILDEAHERTLATDILMGLLKEVVRN---RPDLKLVVMSATLDA------EKFQRYFG--NAPLLAVPG--T- 221 (699)
T ss_pred ccccccEEEechhhhhhHHHHHHHHHHHHHHhh---CCCceEEEeecccch------HHHHHHhC--CCCeeecCC--C-
Confidence 578899999999994 23333233344444433 368999999999743 22333333 333333332 1
Q ss_pred CCcceeEEEEecCcchHHHHHH----HHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC--CCCceEEecc
Q 024287 93 PSCLHHRFVICGKKMKYQTLLS----LIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK--GSSDVLLLEE 166 (269)
Q Consensus 93 ~~~i~~~~~~~~~~~k~~~l~~----ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~v~~~h~ 166 (269)
..+..+|..-...+.++...+ +-....++-+++|....++.+.. +..+.....+... +...+.++|
T Consensus 222 -~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~a------C~~i~re~~~L~~~~g~l~v~PLy- 293 (699)
T KOG0925|consen 222 -HPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDA------CRKISREVDNLGPQVGPLKVVPLY- 293 (699)
T ss_pred -CceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHH------HHHHHHHHHhhccccCCceEEecC-
Confidence 123345554455555554433 33344578999999999887763 5556555555544 345688888
Q ss_pred cCChhHHHHHHHHHh---cC--CccEEEEeccccccCCCCCCCeEEEecC------------------CCCccccccccc
Q 024287 167 EMNFNSRAASLLEVR---QG--GGYLLVSTDIAARGIDLPETTHIYNFDL------------------PRSAIDYLHRAG 223 (269)
Q Consensus 167 ~~~~~~r~~~~~~f~---~~--~~~iLv~T~~~~~Gidi~~~~~Vi~~~~------------------p~~~~~~~qr~G 223 (269)
+.++..+.+-.- .| .-+|+|+|++++-.+.++++-+||+.++ |.|..+-.||.|
T Consensus 294 ---P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~g 370 (699)
T KOG0925|consen 294 ---PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAG 370 (699)
T ss_pred ---chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhh
Confidence 444444433321 12 2469999999999999999999998663 557888899999
Q ss_pred cCCCCCCCCCCeEEEEecCchh
Q 024287 224 RTGRKPFSDEKWTVTSIITSEE 245 (269)
Q Consensus 224 R~gR~~~~~~~g~~~~~~~~~~ 245 (269)
|+||. +.|.|+.++++.-
T Consensus 371 ragrt----~pGkcfrLYte~~ 388 (699)
T KOG0925|consen 371 RAGRT----RPGKCFRLYTEEA 388 (699)
T ss_pred hccCC----CCCceEEeecHHh
Confidence 99998 7899999998643
No 119
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.30 E-value=1.5e-10 Score=105.75 Aligned_cols=215 Identities=17% Similarity=0.183 Sum_probs=127.9
Q ss_pred ecCcccEEEEeccccccCCc-----hhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecC
Q 024287 14 KLESVQVLVIDEVDFLFNSS-----KQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNA 88 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~-----~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (269)
.+++++++|+||=|.-.-.. .+...+.-...+ ..+.++|+-|||.+ ++....... ..+..+....
T Consensus 310 Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~---~~~~pvvLgSATPS--LES~~~~~~-----g~y~~~~L~~ 379 (730)
T COG1198 310 PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK---KENAPVVLGSATPS--LESYANAES-----GKYKLLRLTN 379 (730)
T ss_pred chhhccEEEEeccccccccCCcCCCcCHHHHHHHHHH---HhCCCEEEecCCCC--HHHHHhhhc-----CceEEEEccc
Confidence 58999999999999543222 333444444443 37899999999954 333222111 1223333222
Q ss_pred ccc--CCCcceeEEEEecCcch----HHHHHHHHhhc--CCCceEEEeeccchhhh--------hc--------------
Q 024287 89 IKP--LPSCLHHRFVICGKKMK----YQTLLSLIQSD--APESGIIFVGEQSEKSK--------KA-------------- 138 (269)
Q Consensus 89 ~~~--~~~~i~~~~~~~~~~~k----~~~l~~ll~~~--~~~~~lIF~~s~~~~~~--------~~-------------- 138 (269)
-.. ....+.-..+.-..... -..+.+.+++. .+.|+|+|.|.|-=+-. ++
T Consensus 380 R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~ 459 (730)
T COG1198 380 RAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKA 459 (730)
T ss_pred cccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecC
Confidence 221 11112111111111111 12333444322 46899999998863211 11
Q ss_pred ------------------------CCC----CchHHHHHHHhhhcCCCCceEEecccCChhH--HHHHHHHHhcCCccEE
Q 024287 139 ------------------------GNA----PSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS--RAASLLEVRQGGGYLL 188 (269)
Q Consensus 139 ------------------------~~~----~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~--r~~~~~~f~~~~~~iL 188 (269)
+.+ .-++.+.+.|.+.|++ ..+..+-++..... -+..++.|.+|+..||
T Consensus 460 ~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~-~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dIL 538 (730)
T COG1198 460 TGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPG-ARIIRIDSDTTRRKGALEDLLDQFANGEADIL 538 (730)
T ss_pred CCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCC-CcEEEEccccccchhhHHHHHHHHhCCCCCee
Confidence 000 0155677888888775 67888888877654 3578999999999999
Q ss_pred EEeccccccCCCCCCCeEEEecC------C--CC----ccccccccccCCCCCCCCCCeEEEEecC
Q 024287 189 VSTDIAARGIDLPETTHIYNFDL------P--RS----AIDYLHRAGRTGRKPFSDEKWTVTSIIT 242 (269)
Q Consensus 189 v~T~~~~~Gidi~~~~~Vi~~~~------p--~~----~~~~~qr~GR~gR~~~~~~~g~~~~~~~ 242 (269)
|.|++++.|.|+|+++.|.-.|. | .+ ...+.|=.||+||.+ ..|.+++=..
T Consensus 539 iGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~---~~G~VvIQT~ 601 (730)
T COG1198 539 IGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAG---KPGEVVIQTY 601 (730)
T ss_pred ecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCC---CCCeEEEEeC
Confidence 99999999999999998765442 1 22 233356689999997 6666665433
No 120
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.26 E-value=1.5e-11 Score=105.08 Aligned_cols=215 Identities=13% Similarity=0.124 Sum_probs=135.7
Q ss_pred hhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCch---hhHHHHHHhhhcccC
Q 024287 3 SLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQH---RRFLHNCIQQKWTKS 79 (269)
Q Consensus 3 rl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~---~~~l~~~~~~~~~~~ 79 (269)
++++.++...|. ++++||+|.+.+.. + ..+..+++.. --++++||+-.+ +.+|.-.+-.+++..
T Consensus 413 k~m~~l~~~EWG-----llllDEVHvvPA~M-F-RRVlsiv~aH------cKLGLTATLvREDdKI~DLNFLIGPKlYEA 479 (776)
T KOG1123|consen 413 KIMDFLRGREWG-----LLLLDEVHVVPAKM-F-RRVLSIVQAH------CKLGLTATLVREDDKITDLNFLIGPKLYEA 479 (776)
T ss_pred HHHHHHhcCeee-----eEEeehhccchHHH-H-HHHHHHHHHH------hhccceeEEeeccccccccceeecchhhhc
Confidence 578888888888 99999999776554 3 3444555433 347889998655 222322111222222
Q ss_pred ceeEEeecC--------------------cccCCCcceeEEEEecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhh
Q 024287 80 DVVHVHVNA--------------------IKPLPSCLHHRFVICGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKK 137 (269)
Q Consensus 80 ~~~~~~~~~--------------------~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~ 137 (269)
++..+.... +......-+...+.+....|+..-..+++.+ .++++|||..+.-
T Consensus 480 nWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvf----- 554 (776)
T KOG1123|consen 480 NWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVF----- 554 (776)
T ss_pred cHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHH-----
Confidence 211111100 0000111122233344556777666666644 5789999999843
Q ss_pred cCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhc-CCccEEEEeccccccCCCCCCCeEEEecCC-CCc
Q 024287 138 AGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQ-GGGYLLVSTDIAARGIDLPETTHIYNFDLP-RSA 215 (269)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~-~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p-~~~ 215 (269)
.+.++--+ +.-.+++|..++.+|-++++.|+- ..+..++.+.+....+|+|.++++|+.... .|.
T Consensus 555 --------ALk~YAik-----l~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSR 621 (776)
T KOG1123|consen 555 --------ALKEYAIK-----LGKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSR 621 (776)
T ss_pred --------HHHHHHHH-----cCCceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccch
Confidence 23333332 233468999999999999999995 558899999999999999999999988754 467
Q ss_pred cccccccccCCCCCCCCCCeE---EEEecCchhHHH
Q 024287 216 IDYLHRAGRTGRKPFSDEKWT---VTSIITSEELFV 248 (269)
Q Consensus 216 ~~~~qr~GR~gR~~~~~~~g~---~~~~~~~~~~~~ 248 (269)
.+-.||+||.-|..+....+. -|++++.+..++
T Consensus 622 RQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM 657 (776)
T KOG1123|consen 622 RQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEM 657 (776)
T ss_pred HHHHHHHHHHHHHhhcCccccceeeeeeeecchHHH
Confidence 778899999988865443443 445566554443
No 121
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.22 E-value=1.7e-10 Score=106.20 Aligned_cols=173 Identities=21% Similarity=0.308 Sum_probs=118.1
Q ss_pred ecC--cccEEEEeccccccCCchhhhHHHHHHh-----------------hhc----------------------cCCCc
Q 024287 14 KLE--SVQVLVIDEVDFLFNSSKQVSSLKKLLA-----------------SYS----------------------SCNNR 52 (269)
Q Consensus 14 ~l~--~~~~lViDE~~~l~~~~~~~~~i~~i~~-----------------~~~----------------------~~~~~ 52 (269)
.|+ +++++++|++|.++..+.+...+..++. .+. .....
T Consensus 198 ~L~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g 277 (1187)
T COG1110 198 ELSKLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLG 277 (1187)
T ss_pred HhcccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCc
Confidence 445 5789999999988866633333322221 110 12458
Q ss_pred cEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccc
Q 024287 53 QTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQS 132 (269)
Q Consensus 53 q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~ 132 (269)
+++..|||..+....+. +...++ -+++........|+...|... .-...+.++++... ...|||++...
T Consensus 278 ~LvvsSATg~~rg~R~~--LfReLl-----gFevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG-~GgLIfV~~d~ 346 (1187)
T COG1110 278 ILVVSSATGKPRGSRLK--LFRELL-----GFEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLG-DGGLIFVPIDY 346 (1187)
T ss_pred eEEEeeccCCCCCchHH--HHHHHh-----CCccCccchhhhheeeeeccC---ccHHHHHHHHHHhC-CCeEEEEEcHH
Confidence 89999999877643221 222222 223344445566677666655 44555566666554 57999999955
Q ss_pred hhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec----cccccCCCCCC-CeEE
Q 024287 133 EKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD----IAARGIDLPET-THIY 207 (269)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~----~~~~Gidi~~~-~~Vi 207 (269)
..+. +++++++|... ++++..+|+.- .+.++.|..|++++||++. ++.||+|+|+. .++|
T Consensus 347 G~e~-------aeel~e~Lr~~---Gi~a~~~~a~~-----~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaI 411 (1187)
T COG1110 347 GREK-------AEELAEYLRSH---GINAELIHAEK-----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAV 411 (1187)
T ss_pred hHHH-------HHHHHHHHHhc---CceEEEeeccc-----hhhhhhhccCceeEEEEecccccceeecCCchhheeEEE
Confidence 4444 67789999988 88999999842 6679999999999999866 57899999975 6899
Q ss_pred EecCC
Q 024287 208 NFDLP 212 (269)
Q Consensus 208 ~~~~p 212 (269)
.++.|
T Consensus 412 F~GvP 416 (1187)
T COG1110 412 FYGVP 416 (1187)
T ss_pred EecCC
Confidence 99988
No 122
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.12 E-value=2.8e-09 Score=98.59 Aligned_cols=112 Identities=12% Similarity=0.075 Sum_probs=79.6
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCC--CceEEecccCChh---------------------HHHHHH
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGS--SDVLLLEEEMNFN---------------------SRAASL 177 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~h~~~~~~---------------------~r~~~~ 177 (269)
+++++|||.++..|.. +.+.+.+.++.. .....+++..+.. ....++
T Consensus 514 ~~kamvv~~sr~~a~~----------~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (667)
T TIGR00348 514 KFKAMVVAISRYACVE----------EKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDL 583 (667)
T ss_pred cCceeEEEecHHHHHH----------HHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHH
Confidence 4799999999986444 555555544332 2344555543322 124688
Q ss_pred HHHhc-CCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCC-CCCCCCeEEEEecCc
Q 024287 178 LEVRQ-GGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRK-PFSDEKWTVTSIITS 243 (269)
Q Consensus 178 ~~f~~-~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~-~~~~~~g~~~~~~~~ 243 (269)
++|++ +.+++||+++.+..|.|.|.++.++....-.+ ..++|.+||+.|. ..+...|.++.++..
T Consensus 584 ~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~IvDy~g~ 650 (667)
T TIGR00348 584 ERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGLIVDYRGL 650 (667)
T ss_pred HHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEEEEECcCh
Confidence 88976 57899999999999999999999886654444 4689999999994 433356888888774
No 123
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.11 E-value=5.3e-09 Score=93.86 Aligned_cols=128 Identities=17% Similarity=0.127 Sum_probs=98.5
Q ss_pred chHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCC
Q 024287 107 MKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGG 184 (269)
Q Consensus 107 ~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~ 184 (269)
.|...|-.+|... .+.+|+||..=-.. ...+.++..- .++...-+.|.++.++|...++.|....
T Consensus 471 GKm~vLDkLL~~Lk~~GhRVLIFSQmt~m----------LDILeDyc~~---R~y~ycRiDGSt~~eeR~~aI~~fn~~~ 537 (971)
T KOG0385|consen 471 GKMLVLDKLLPKLKEQGHRVLIFSQMTRM----------LDILEDYCML---RGYEYCRLDGSTSHEEREDAIEAFNAPP 537 (971)
T ss_pred cceehHHHHHHHHHhCCCeEEEeHHHHHH----------HHHHHHHHHh---cCceeEeecCCCCcHHHHHHHHhcCCCC
Confidence 4666666666543 46789999853221 3334444332 3678899999999999999999998754
Q ss_pred ---ccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHH
Q 024287 185 ---GYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFV 248 (269)
Q Consensus 185 ---~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~ 248 (269)
+-.|++|-+.+.|||+-.++.||.||--++|..=.|-..||-|-|+. +.-++|-+++....+.
T Consensus 538 s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~-K~V~V~RLitentVEe 603 (971)
T KOG0385|consen 538 SEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQK-KPVVVYRLITENTVEE 603 (971)
T ss_pred cceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCc-CceEEEEEeccchHHH
Confidence 55789999999999999999999999999999888888888888854 6677888888765543
No 124
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.00 E-value=9.5e-09 Score=96.22 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=65.6
Q ss_pred EEEeeccchhhhhcCCCCchHHHHHHHhhhcC---CCCceEEecccCChhHHHHHHHHH---------------------
Q 024287 125 IIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK---GSSDVLLLEEEMNFNSRAASLLEV--------------------- 180 (269)
Q Consensus 125 lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~v~~~h~~~~~~~r~~~~~~f--------------------- 180 (269)
+|=+++++-+. .++..|..... ....+.+|||..+...|..+++..
T Consensus 760 liR~anI~p~V----------~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~ 829 (1110)
T TIGR02562 760 LIRVANIDPLI----------RLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDL 829 (1110)
T ss_pred EEEEcCchHHH----------HHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHH
Confidence 56666666533 35555544432 124588899999888887766553
Q ss_pred -hc----CCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCC
Q 024287 181 -RQ----GGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS 231 (269)
Q Consensus 181 -~~----~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~ 231 (269)
++ +...|+|+|++.+.|+|+. .+++| .-|.+..+.+||+||+.|.+..
T Consensus 830 l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~--~~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 830 MQNSPALNHLFIVLATPVEEVGRDHD-YDWAI--ADPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred HhcccccCCCeEEEEeeeEEEEeccc-CCeee--eccCcHHHHHHHhhcccccccC
Confidence 12 3467999999999999973 34433 3477899999999999999854
No 125
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.96 E-value=1.5e-09 Score=98.33 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=75.3
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCC--CceEEecccCChhHHHHHHHHHhc--CCccEEEEeccccc
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGS--SDVLLLEEEMNFNSRAASLLEVRQ--GGGYLLVSTDIAAR 196 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~h~~~~~~~r~~~~~~f~~--~~~~iLv~T~~~~~ 196 (269)
.++|||||.+.+-|+. +.+.+.++|+.. --+..+.|.-...+ ..+..|.. ...+|.++.+++.-
T Consensus 426 ~~KTIvFa~n~dHAe~----------i~~~~~~~ype~~~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~T 493 (875)
T COG4096 426 IGKTIVFAKNHDHAER----------IREALVNEYPEYNGRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTT 493 (875)
T ss_pred cCceEEEeeCcHHHHH----------HHHHHHHhCccccCceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhc
Confidence 5799999999986544 666666666631 23556666654433 34556654 44789999999999
Q ss_pred cCCCCCCCeEEEecCCCCccccccccccCCCCCC
Q 024287 197 GIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF 230 (269)
Q Consensus 197 Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~ 230 (269)
|+|+|.+-.++.+..-.|...|.||+||.-|...
T Consensus 494 GiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 494 GVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred CCCchheeeeeehhhhhhHHHHHHHhcCccccCc
Confidence 9999999999999888999999999999888763
No 126
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.90 E-value=1.4e-08 Score=95.16 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=101.3
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcC---CccEEEEeccccc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQG---GGYLLVSTDIAAR 196 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~---~~~iLv~T~~~~~ 196 (269)
.+.+||||..=+.. ...+.++|... +++..-+.|++..+.|++.+..|... .+-.|+||-+.+.
T Consensus 698 ~GHrVLIFSQMVRm----------LDIL~eYL~~r---~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGL 764 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRM----------LDILAEYLSLR---GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGL 764 (1373)
T ss_pred CCceEEEhHHHHHH----------HHHHHHHHHHc---CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcc
Confidence 35799999865442 67788998877 78899999999999999999999864 3668999999999
Q ss_pred cCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCch--hHHHHHHHHHHh
Q 024287 197 GIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSE--ELFVLQRYENEL 256 (269)
Q Consensus 197 Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~ 256 (269)
|||+-.++.||.||--++|..=+|-..||=|-|+. ..-.+|-|++.+ +.+.+.+-...+
T Consensus 765 GINLatADTVIIFDSDWNPQNDLQAqARaHRIGQk-k~VnVYRLVTk~TvEeEilERAk~Km 825 (1373)
T KOG0384|consen 765 GINLATADTVIIFDSDWNPQNDLQAQARAHRIGQK-KHVNVYRLVTKNTVEEEILERAKLKM 825 (1373)
T ss_pred cccccccceEEEeCCCCCcchHHHHHHHHHhhccc-ceEEEEEEecCCchHHHHHHHHHHHh
Confidence 99999999999999999999999988888888864 566788899875 445555544444
No 127
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.87 E-value=6e-08 Score=92.41 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=74.8
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccC
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGI 198 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gi 198 (269)
.+++++||++|.+.++. +++.|..... .+.. .+..+.. ..|.++++.|++++..||++|+.+++|+
T Consensus 673 ~~g~~LVlftS~~~l~~----------v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGV 739 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHM----------VYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGV 739 (850)
T ss_pred cCCCEEEEeCCHHHHHH----------HHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeeccc
Confidence 45799999999987444 5666654211 1222 3333433 5788899999999999999999999999
Q ss_pred CCCCCC--eEEEecCCCC------------------------------ccccccccccCCCCCCCCCCeEEEEecCc
Q 024287 199 DLPETT--HIYNFDLPRS------------------------------AIDYLHRAGRTGRKPFSDEKWTVTSIITS 243 (269)
Q Consensus 199 di~~~~--~Vi~~~~p~~------------------------------~~~~~qr~GR~gR~~~~~~~g~~~~~~~~ 243 (269)
|+|+.. .||...+|.. ...+.|.+||.-|... ..|.++ ++++
T Consensus 740 D~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~--D~G~v~-ilD~ 813 (850)
T TIGR01407 740 DFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRREN--DRGSIV-ILDR 813 (850)
T ss_pred ccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCC--ceEEEE-EEcc
Confidence 999887 4666666632 1223588899999863 467554 4443
No 128
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.81 E-value=1.6e-07 Score=86.65 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=88.9
Q ss_pred ecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHH-HHHH
Q 024287 103 CGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAA-SLLE 179 (269)
Q Consensus 103 ~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~-~~~~ 179 (269)
.....|..++.+-+... .+.|+||.|.|++. .+.+.+.|.+. +++...+++.-. +++. ++.
T Consensus 406 ~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~----------SE~ls~~L~~~---gi~h~vLNAk~~--e~EA~IIa- 469 (925)
T PRK12903 406 GTKHAKWKAVVKEVKRVHKKGQPILIGTAQVED----------SETLHELLLEA---NIPHTVLNAKQN--AREAEIIA- 469 (925)
T ss_pred EcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH----------HHHHHHHHHHC---CCCceeecccch--hhHHHHHH-
Confidence 34556777777666533 57899999999886 44477888776 565556666422 3332 222
Q ss_pred HhcCC-ccEEEEeccccccCCCCCCC--------eEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhH
Q 024287 180 VRQGG-GYLLVSTDIAARGIDLPETT--------HIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEEL 246 (269)
Q Consensus 180 f~~~~-~~iLv~T~~~~~Gidi~~~~--------~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~ 246 (269)
..|. -.|.|+|++++||.||.--. +||....|.|..-=-|..||+||+| ..|.+-+|++-+|.
T Consensus 470 -~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQG---DpGss~f~lSLeD~ 541 (925)
T PRK12903 470 -KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQG---DVGESRFFISLDDQ 541 (925)
T ss_pred -hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCC---CCCcceEEEecchH
Confidence 4564 56899999999999986433 7888888888777789999999999 77877777775443
No 129
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.77 E-value=7e-09 Score=79.52 Aligned_cols=65 Identities=25% Similarity=0.362 Sum_probs=53.6
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhh
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRR 66 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~ 66 (269)
|+++.+++..+..++.+++++|+||+|.+..++ ....+.++++.+....+.|++++|||+++.++
T Consensus 103 ~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~-~~~~~~~i~~~~~~~~~~~~i~~SAT~~~~~~ 167 (169)
T PF00270_consen 103 PEQLLDLISNGKINISRLSLIVIDEAHHLSDET-FRAMLKSILRRLKRFKNIQIILLSATLPSNVE 167 (169)
T ss_dssp HHHHHHHHHTTSSTGTTESEEEEETHHHHHHTT-HHHHHHHHHHHSHTTTTSEEEEEESSSTHHHH
T ss_pred cchhhccccccccccccceeeccCccccccccc-HHHHHHHHHHHhcCCCCCcEEEEeeCCChhHh
Confidence 578889999877788999999999999888765 45678888888765557999999999995544
No 130
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.76 E-value=3.3e-07 Score=83.39 Aligned_cols=169 Identities=17% Similarity=0.130 Sum_probs=107.3
Q ss_pred ccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhc--CCCceEEEee
Q 024287 52 RQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD--APESGIIFVG 129 (269)
Q Consensus 52 ~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~ 129 (269)
..+.+||.|.....+.+.+.+ .-+ ++.+.+..+....-....+......|..++.+-+... .+.|+||.+.
T Consensus 363 ~kLsGMTGTa~t~~~Ef~~iY-----~l~--Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~ 435 (764)
T PRK12326 363 PTVCGMTGTAVAAGEQLRQFY-----DLG--VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTH 435 (764)
T ss_pred chheeecCCChhHHHHHHHHh-----CCc--EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 467788999866655444332 122 2233322221111111123334556777777666543 5789999999
Q ss_pred ccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCC-ccEEEEeccccccCCCCCC-----
Q 024287 130 EQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGG-GYLLVSTDIAARGIDLPET----- 203 (269)
Q Consensus 130 s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~-~~iLv~T~~~~~Gidi~~~----- 203 (269)
|.+. .+.+.+.|.+. +++...+++.-...+ .+++. ..|. -.|-|+|++++||.||.--
T Consensus 436 sI~~----------SE~ls~~L~~~---gI~h~vLNAk~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~ 499 (764)
T PRK12326 436 DVAE----------SEELAERLRAA---GVPAVVLNAKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEA 499 (764)
T ss_pred CHHH----------HHHHHHHHHhC---CCcceeeccCchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCccc
Confidence 9886 44477788776 566666776533222 22222 3454 5689999999999998532
Q ss_pred ----------CeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhH
Q 024287 204 ----------THIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEEL 246 (269)
Q Consensus 204 ----------~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~ 246 (269)
=+||-...|.|..-=-|-.||+||+| ..|.+-+|++-+|.
T Consensus 500 ~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG---DpGss~f~lSleDd 549 (764)
T PRK12326 500 DRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG---DPGSSVFFVSLEDD 549 (764)
T ss_pred chHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC---CCCceeEEEEcchh
Confidence 26887878888888889999999999 77888888774443
No 131
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.71 E-value=9.7e-07 Score=76.11 Aligned_cols=123 Identities=11% Similarity=0.125 Sum_probs=91.5
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCC-cc-EEEEecccccc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGG-GY-LLVSTDIAARG 197 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~-~~-iLv~T~~~~~G 197 (269)
++.+.+||+-.... .+.+..++.+. +....-+.|..++.+|....+.|...+ .+ .+++..+++.|
T Consensus 491 ~~~KflVFaHH~~v----------Ld~Iq~~~~~r---~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvG 557 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIV----------LDTIQVEVNKR---KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVG 557 (689)
T ss_pred CCceEEEEehhHHH----------HHHHHHHHHHc---CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccc
Confidence 45789999987553 34455555555 677889999999999999999998654 44 35677788999
Q ss_pred CCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCc--hhHHHHHHHHHHh
Q 024287 198 IDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITS--EELFVLQRYENEL 256 (269)
Q Consensus 198 idi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~ 256 (269)
+++...+.|+...+|+++.-.+|--.|+-|.|+...-+ +++|+.+ -|...+..+.+.+
T Consensus 558 Lt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~-v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 558 LTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVF-VQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred eeeeccceEEEEEecCCCceEEechhhhhhccccceee-EEEEEecCchHHHHHHHHHHHH
Confidence 99999999999999999999999888888888653444 4445543 3444444444443
No 132
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.63 E-value=7.6e-07 Score=85.55 Aligned_cols=110 Identities=20% Similarity=0.199 Sum_probs=75.5
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCC
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGID 199 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gid 199 (269)
.+++++||++|.+..++ +++.|.+..... ....+.-++....|.++++.|+.++-.||++|..+++|||
T Consensus 751 ~~g~~LVLFtSy~~l~~----------v~~~l~~~~~~~-~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD 819 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKK----------TYYNLKNEEELE-GYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGID 819 (928)
T ss_pred CCCCEEEEECCHHHHHH----------HHHHHhhccccc-CceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccc
Confidence 45799999999886444 666665543211 1222333444456788999999988889999999999999
Q ss_pred CCCC--CeEEEecCCCC------------------------------ccccccccccCCCCCCCCCCeEEEEecCc
Q 024287 200 LPET--THIYNFDLPRS------------------------------AIDYLHRAGRTGRKPFSDEKWTVTSIITS 243 (269)
Q Consensus 200 i~~~--~~Vi~~~~p~~------------------------------~~~~~qr~GR~gR~~~~~~~g~~~~~~~~ 243 (269)
+|+. .+||...+|.. ...+.|-+||.-|... ..|.++ ++++
T Consensus 820 ~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~--D~G~v~-ilD~ 892 (928)
T PRK08074 820 IPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTET--DRGTVF-VLDR 892 (928)
T ss_pred cCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCC--ceEEEE-EecC
Confidence 9986 67877776641 1222578899999863 467544 4443
No 133
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.62 E-value=5.6e-08 Score=76.94 Aligned_cols=66 Identities=30% Similarity=0.482 Sum_probs=55.7
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHH
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLH 69 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~ 69 (269)
|++|.+++.++..++++++++|+||+|.+.+.+ ....+..+...+. .+.|++++|||+++....+.
T Consensus 127 ~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~-~~~~~~~~~~~l~--~~~~~~~~SAT~~~~~~~~~ 192 (203)
T cd00268 127 PGRLLDLLERGKLDLSKVKYLVLDEADRMLDMG-FEDQIREILKLLP--KDRQTLLFSATMPKEVRDLA 192 (203)
T ss_pred hHHHHHHHHcCCCChhhCCEEEEeChHHhhccC-hHHHHHHHHHhCC--cccEEEEEeccCCHHHHHHH
Confidence 678899999999999999999999999887655 5577888887765 68999999999998766554
No 134
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.60 E-value=1.1e-06 Score=82.02 Aligned_cols=125 Identities=17% Similarity=0.160 Sum_probs=86.8
Q ss_pred ecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHH
Q 024287 103 CGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180 (269)
Q Consensus 103 ~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f 180 (269)
.....|..++..-+... .+.++||-|.|... .+.+...|.+. +++...++..-...+- +++.
T Consensus 548 ~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~----------se~ls~~L~~~---gi~h~vLNak~~~~Ea-~iia-- 611 (970)
T PRK12899 548 MTEREKYHAIVAEIASIHRKGNPILIGTESVEV----------SEKLSRILRQN---RIEHTVLNAKNHAQEA-EIIA-- 611 (970)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH----------HHHHHHHHHHc---CCcceecccchhhhHH-HHHH--
Confidence 34456777766655443 56889999999875 44477777665 5555555554222221 2222
Q ss_pred hcCC-ccEEEEeccccccCCCCCC--------CeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhH
Q 024287 181 RQGG-GYLLVSTDIAARGIDLPET--------THIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEEL 246 (269)
Q Consensus 181 ~~~~-~~iLv~T~~~~~Gidi~~~--------~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~ 246 (269)
..|. -.|.|+|++++||.||.-- =+||-...|.+..---|-.||+||+| ..|.+-+|++-+|.
T Consensus 612 ~AG~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQG---dpGss~f~lSlEDd 683 (970)
T PRK12899 612 GAGKLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLG---DPGAAKFFLSFEDR 683 (970)
T ss_pred hcCCCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCC---CCCceeEEEEcchH
Confidence 3455 5689999999999998432 26777778888888999999999999 78888888875443
No 135
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.59 E-value=3.1e-07 Score=84.25 Aligned_cols=126 Identities=16% Similarity=0.128 Sum_probs=92.4
Q ss_pred hHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCC---
Q 024287 108 KYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGG--- 184 (269)
Q Consensus 108 k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~--- 184 (269)
++..|..++... +.++++|+--+.+-.. ...+.+.+... .+..+..+||.|+..+|+.+++.|.+..
T Consensus 579 kl~~L~~ll~~~-~ek~~~~~v~Isny~~-------tldl~e~~~~~--~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~ 648 (776)
T KOG0390|consen 579 KLLVLVFLLEVI-REKLLVKSVLISNYTQ-------TLDLFEQLCRW--RGYEVLRLDGKTSIKQRQKLVDTFNDPESPS 648 (776)
T ss_pred HHHHHHHHHHHH-hhhcceEEEEeccHHH-------HHHHHHHHHhh--cCceEEEEcCCCchHHHHHHHHhccCCCCCc
Confidence 444555555322 3455555554443111 22233333332 2678999999999999999999999754
Q ss_pred ccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCch
Q 024287 185 GYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSE 244 (269)
Q Consensus 185 ~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~ 244 (269)
.-.|.+|.+.+.|+++-+++.+|.||.+++|+.=.|-++|+=|.|+. +...+|-|++.+
T Consensus 649 ~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQK-k~v~iYrLlatG 707 (776)
T KOG0390|consen 649 FVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQK-KPVYIYRLLATG 707 (776)
T ss_pred eEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCc-ceEEEEEeecCC
Confidence 33667788899999999999999999999999999999999999965 667788888764
No 136
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.58 E-value=2.1e-06 Score=81.31 Aligned_cols=223 Identities=13% Similarity=0.140 Sum_probs=135.8
Q ss_pred ecCcccEEEEeccccccCCchhhh------HHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeec
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVS------SLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVN 87 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~------~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~ 87 (269)
...++++.|.||.|.+-+. ..+ .+..+...+ .++.+++.+|..+.+.-.. .+.....+...
T Consensus 1250 ~iQ~v~l~i~d~lh~igg~--~g~v~evi~S~r~ia~q~--~k~ir~v~ls~~lana~d~---------ig~s~~~v~Nf 1316 (1674)
T KOG0951|consen 1250 SIQQVDLFIVDELHLIGGV--YGAVYEVICSMRYIASQL--EKKIRVVALSSSLANARDL---------IGASSSGVFNF 1316 (1674)
T ss_pred hhhhcceEeeehhhhhccc--CCceEEEEeeHHHHHHHH--HhheeEEEeehhhccchhh---------ccccccceeec
Confidence 5678899999999955422 211 133444443 3789999999998875331 11222222222
Q ss_pred CcccCCCcceeEEEEecCcc---hHHH-----HHHHHh-hcCCCceEEEeeccchhhhhcCCCCchHH------------
Q 024287 88 AIKPLPSCLHHRFVICGKKM---KYQT-----LLSLIQ-SDAPESGIIFVGEQSEKSKKAGNAPSTTL------------ 146 (269)
Q Consensus 88 ~~~~~~~~i~~~~~~~~~~~---k~~~-----l~~ll~-~~~~~~~lIF~~s~~~~~~~~~~~~~~~~------------ 146 (269)
.+...+..+...+..++... +... ...+.+ ...+++.+||+++++.|..+|..+.....
T Consensus 1317 ~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e 1396 (1674)
T KOG0951|consen 1317 SPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELE 1396 (1674)
T ss_pred CcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHh
Confidence 23333333444444433222 1111 112222 22468999999999999988855544221
Q ss_pred -HHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEE-----ec------CCCC
Q 024287 147 -LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYN-----FD------LPRS 214 (269)
Q Consensus 147 -~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~-----~~------~p~~ 214 (269)
..+.|++.++.+ +. |.++++.+..-+-..|..|.+.++|...- ..|+-... +.||- || .+.+
T Consensus 1397 ~~~~~l~e~l~~g--vg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~ 1470 (1674)
T KOG0951|consen 1397 ECDETLRESLKHG--VG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYP 1470 (1674)
T ss_pred cchHhhhhccccc--cc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccc-eEEEEecceeecccccccccCc
Confidence 112333333222 33 99999999888888899999999988887 77875433 44442 33 3456
Q ss_pred ccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHHHHHhcCccccccccc
Q 024287 215 AIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYENELKFKSEELTLQT 267 (269)
Q Consensus 215 ~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (269)
.+...|+.|++.|.| .|+++.+..+.+..+++. .+.+|+++
T Consensus 1471 i~~ll~m~G~a~~~~------k~vi~~~~~~k~yykkfl------~e~lPves 1511 (1674)
T KOG0951|consen 1471 IAELLQMVGLASGAG------KCVIMCHTPKKEYYKKFL------YEPLPVES 1511 (1674)
T ss_pred hhHHHHHhhhhcCCc------cEEEEecCchHHHHHHhc------cCcCchHH
Confidence 788899999998865 788888877777655433 45566654
No 137
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.57 E-value=5e-07 Score=85.13 Aligned_cols=129 Identities=18% Similarity=0.171 Sum_probs=103.0
Q ss_pred chHHHHHHHHhhc----------------CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCCh
Q 024287 107 MKYQTLLSLIQSD----------------APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170 (269)
Q Consensus 107 ~k~~~l~~ll~~~----------------~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~ 170 (269)
-|+.+|.++|... .+.+++|||.-++. ...+.+-|.+.+-...+...+.|..++
T Consensus 1310 pKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~m----------lDlVekDL~k~~mpsVtymRLDGSVpp 1379 (1549)
T KOG0392|consen 1310 PKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSM----------LDLVEKDLFKKYMPSVTYMRLDGSVPP 1379 (1549)
T ss_pred hhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHH----------HHHHHHHHhhhhcCceeEEEecCCCCc
Confidence 3777888888633 23489999998885 445666665555555666789999999
Q ss_pred hHHHHHHHHHhcC-CccEE-EEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhH
Q 024287 171 NSRAASLLEVRQG-GGYLL-VSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEEL 246 (269)
Q Consensus 171 ~~r~~~~~~f~~~-~~~iL-v~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~ 246 (269)
.+|.+++++|.++ .+.+| .+|.+.+.|+|+.+++.||.++--+++..=.|-+-||-|-|+. +.-.+|-+++.+..
T Consensus 1380 ~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQK-rvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1380 GDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQK-RVVNVYRLITRGTL 1456 (1549)
T ss_pred HHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCc-eeeeeeeehhcccH
Confidence 9999999999987 57765 6788899999999999999999999999889999999999854 55567788887644
No 138
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.54 E-value=2e-06 Score=80.16 Aligned_cols=105 Identities=22% Similarity=0.376 Sum_probs=69.5
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhc----CCccEEEEecccc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQ----GGGYLLVSTDIAA 195 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~----~~~~iLv~T~~~~ 195 (269)
.+++++||++|.+..+. +++.|.... +.. ...+|.. .+.++++.|++ ++..||++|..++
T Consensus 533 ~~gg~LVlFtSy~~l~~----------v~~~l~~~~--~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~ 596 (697)
T PRK11747 533 KHKGSLVLFASRRQMQK----------VADLLPRDL--RLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFA 596 (697)
T ss_pred cCCCEEEEeCcHHHHHH----------HHHHHHHhc--CCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEecccc
Confidence 34569999999886444 555555432 222 3445542 45667777764 6778999999999
Q ss_pred ccCCCCCC--CeEEEecCCCC-c-----------------------------cccccccccCCCCCCCCCCeEEEEecCc
Q 024287 196 RGIDLPET--THIYNFDLPRS-A-----------------------------IDYLHRAGRTGRKPFSDEKWTVTSIITS 243 (269)
Q Consensus 196 ~Gidi~~~--~~Vi~~~~p~~-~-----------------------------~~~~qr~GR~gR~~~~~~~g~~~~~~~~ 243 (269)
+|||+|+- ++||...+|.. + ..+.|-+||.-|... ..|.++ ++++
T Consensus 597 EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~--D~G~i~-ilD~ 673 (697)
T PRK11747 597 EGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQ--DRGRVT-ILDR 673 (697)
T ss_pred ccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCC--ceEEEE-EEcc
Confidence 99999874 67887776631 1 122477899999863 467544 4444
No 139
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.53 E-value=1e-06 Score=79.79 Aligned_cols=127 Identities=15% Similarity=0.171 Sum_probs=105.5
Q ss_pred chHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCC
Q 024287 107 MKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGG 184 (269)
Q Consensus 107 ~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~ 184 (269)
.|...+..++... .+.++++|..++.. ...+..+|... .++...-+.|..+...|..++++|.++.
T Consensus 530 GKm~vl~~ll~~W~kqg~rvllFsqs~~m----------LdilE~fL~~~--~~ysylRmDGtT~~~~R~~lVd~Fne~~ 597 (923)
T KOG0387|consen 530 GKMKVLAKLLKDWKKQGDRVLLFSQSRQM----------LDILESFLRRA--KGYSYLRMDGTTPAALRQKLVDRFNEDE 597 (923)
T ss_pred chHHHHHHHHHHHhhCCCEEEEehhHHHH----------HHHHHHHHHhc--CCceEEEecCCCccchhhHHHHhhcCCC
Confidence 4788888888755 46799999999875 56677777741 3788999999999999999999999765
Q ss_pred --ccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhH
Q 024287 185 --GYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEEL 246 (269)
Q Consensus 185 --~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~ 246 (269)
.-.|++|.+.+.|+|+-.++.||.||+-++|+.=.|-.-|+=|.|+. +.-.+|-+++.+..
T Consensus 598 s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQk-kdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 598 SIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQK-KDVVVYRLMTAGTI 660 (923)
T ss_pred ceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCc-cceEEEEEecCCcH
Confidence 34689999999999999999999999999999999999999999964 44556777776544
No 140
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.52 E-value=2.1e-06 Score=79.98 Aligned_cols=125 Identities=16% Similarity=0.156 Sum_probs=81.0
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCc-cEEEEeccccccC
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGG-YLLVSTDIAARGI 198 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~-~iLv~T~~~~~Gi 198 (269)
.+++++||++|.+.+ ..+.+.+...... .....+|..+ +...++.|+.+.- .++|+|..+++||
T Consensus 478 ~~~~~lvlF~Sy~~l----------~~~~~~~~~~~~~--~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGV 542 (654)
T COG1199 478 SPGGVLVLFPSYEYL----------KRVAERLKDERST--LPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGV 542 (654)
T ss_pred cCCCEEEEeccHHHH----------HHHHHHHhhcCcc--ceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcc
Confidence 356999999998753 3356666544111 1334455444 4478888887655 8999999999999
Q ss_pred CCCCC--CeEEEecCCC------------------------------CccccccccccCCCCCCCCCCeEEEEecCch-h
Q 024287 199 DLPET--THIYNFDLPR------------------------------SAIDYLHRAGRTGRKPFSDEKWTVTSIITSE-E 245 (269)
Q Consensus 199 di~~~--~~Vi~~~~p~------------------------------~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~-~ 245 (269)
|+|+- ..||...+|. ......|-+||+-|.- ...|.++++=..- .
T Consensus 543 D~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~--~D~G~ivllD~R~~~ 620 (654)
T COG1199 543 DFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSE--DDRGVIVLLDKRYAT 620 (654)
T ss_pred cCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccC--CCceEEEEecccchh
Confidence 99987 5677777664 2333468899999975 2577666554432 2
Q ss_pred HHHHHHHHHHhcCccc
Q 024287 246 LFVLQRYENELKFKSE 261 (269)
Q Consensus 246 ~~~~~~~~~~~~~~~~ 261 (269)
...-..+-+.+...+.
T Consensus 621 ~~y~~~l~~~l~~~~~ 636 (654)
T COG1199 621 KRYGKLLLDSLPPFPK 636 (654)
T ss_pred hhHHHHHHHhCCCCcc
Confidence 2344455555544433
No 141
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.50 E-value=2.9e-06 Score=79.77 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=85.2
Q ss_pred ecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHH
Q 024287 103 CGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180 (269)
Q Consensus 103 ~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f 180 (269)
.....|+.++.+-+... .+.|+||-+.|++. .+.+...|... +++-..++......+- +++.
T Consensus 608 ~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~----------SE~lS~~L~~~---gI~H~VLNAK~h~~EA-eIVA-- 671 (1112)
T PRK12901 608 KTKREKYNAVIEEITELSEAGRPVLVGTTSVEI----------SELLSRMLKMR---KIPHNVLNAKLHQKEA-EIVA-- 671 (1112)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHH----------HHHHHHHHHHc---CCcHHHhhccchhhHH-HHHH--
Confidence 34567888877777644 57899999999875 34466777665 4443344443222222 2222
Q ss_pred hcCC-ccEEEEeccccccCCCCC---C-----CeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchh
Q 024287 181 RQGG-GYLLVSTDIAARGIDLPE---T-----THIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEE 245 (269)
Q Consensus 181 ~~~~-~~iLv~T~~~~~Gidi~~---~-----~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~ 245 (269)
..|. -.|-|+|++++||.||.- | =+||--..+.|..---|-.||+||+| ..|.+-+|++-+|
T Consensus 672 ~AG~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQG---DPGsS~f~lSLED 742 (1112)
T PRK12901 672 EAGQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQG---DPGSSQFYVSLED 742 (1112)
T ss_pred hcCCCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCC---CCCcceEEEEccc
Confidence 2354 568899999999999852 2 36777778888888899999999999 7777777777443
No 142
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.40 E-value=7.3e-06 Score=76.56 Aligned_cols=125 Identities=16% Similarity=0.213 Sum_probs=84.9
Q ss_pred EecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHH
Q 024287 102 ICGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLE 179 (269)
Q Consensus 102 ~~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~ 179 (269)
......|..++.+-+... .+.|+||-+.|++. .+.+...|.+. +++...++..-...+- +++.
T Consensus 428 y~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~----------SE~ls~~L~~~---gi~h~VLNAk~~~~EA-~IIa- 492 (913)
T PRK13103 428 YLTAEEKYAAIITDIKECMALGRPVLVGTATIET----------SEHMSNLLKKE---GIEHKVLNAKYHEKEA-EIIA- 492 (913)
T ss_pred EcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHH----------HHHHHHHHHHc---CCcHHHhccccchhHH-HHHH-
Confidence 345567888887777643 57899999999886 44477777766 4444344443222221 2222
Q ss_pred HhcCC-ccEEEEeccccccCCCCC--------------------------------C-----CeEEEecCCCCccccccc
Q 024287 180 VRQGG-GYLLVSTDIAARGIDLPE--------------------------------T-----THIYNFDLPRSAIDYLHR 221 (269)
Q Consensus 180 f~~~~-~~iLv~T~~~~~Gidi~~--------------------------------~-----~~Vi~~~~p~~~~~~~qr 221 (269)
..|. -.|-|+|++++||.||.- | =+||--..|.|..-=-|-
T Consensus 493 -~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QL 571 (913)
T PRK13103 493 -QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQL 571 (913)
T ss_pred -cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHh
Confidence 3454 568999999999999831 1 256666677777777899
Q ss_pred cccCCCCCCCCCCeEEEEecCchh
Q 024287 222 AGRTGRKPFSDEKWTVTSIITSEE 245 (269)
Q Consensus 222 ~GR~gR~~~~~~~g~~~~~~~~~~ 245 (269)
.||+||+| ..|.+-+|++-+|
T Consensus 572 rGRaGRQG---DPGsS~f~lSlED 592 (913)
T PRK13103 572 RGRAGRQG---DPGSSRFYLSLED 592 (913)
T ss_pred ccccccCC---CCCceEEEEEcCc
Confidence 99999999 7787777777443
No 143
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.35 E-value=4.2e-06 Score=79.26 Aligned_cols=118 Identities=15% Similarity=0.126 Sum_probs=75.9
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCC
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGID 199 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gid 199 (269)
.+++++|+++|.+..+. +++.|... ...+ ...|... .+.+++++|++++..||++|..+++|||
T Consensus 646 ~~g~~LVLFtS~~~l~~----------v~~~l~~~---~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD 709 (820)
T PRK07246 646 LQQPILVLFNSKKHLLA----------VSDLLDQW---QVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVD 709 (820)
T ss_pred cCCCEEEEECcHHHHHH----------HHHHHhhc---CCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCC
Confidence 46899999999886444 55555433 2333 4445322 2456899999988889999999999999
Q ss_pred CCC--CCeEEEecCCCC------------------------------ccccccccccCCCCCCCCCCeEEEEecCch--h
Q 024287 200 LPE--TTHIYNFDLPRS------------------------------AIDYLHRAGRTGRKPFSDEKWTVTSIITSE--E 245 (269)
Q Consensus 200 i~~--~~~Vi~~~~p~~------------------------------~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~--~ 245 (269)
+|. ...||...+|.. ...+.|-+||.-|... ..|.++ +++++ .
T Consensus 710 ~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~--D~Gvv~-ilD~R~~~ 786 (820)
T PRK07246 710 FVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRRED--QKSAVL-ILDRRILT 786 (820)
T ss_pred CCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCC--CcEEEE-EECCcccc
Confidence 974 445566665521 2223588899999863 577555 44443 2
Q ss_pred HHHHHHHHHHh
Q 024287 246 LFVLQRYENEL 256 (269)
Q Consensus 246 ~~~~~~~~~~~ 256 (269)
..+-+.+.+.+
T Consensus 787 k~Yg~~~l~sL 797 (820)
T PRK07246 787 KSYGKQILASL 797 (820)
T ss_pred cHHHHHHHHhC
Confidence 23334444444
No 144
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.35 E-value=3e-05 Score=70.90 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=77.3
Q ss_pred HHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhc----CCc
Q 024287 110 QTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQ----GGG 185 (269)
Q Consensus 110 ~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~----~~~ 185 (269)
+.+..++... +++++|.+.|...++ .+++.+...+. ....+.|..+ .+.+.+++|+. |.-
T Consensus 460 ~~~~~~~~~~-~G~~lvLfTS~~~~~----------~~~~~l~~~l~---~~~l~qg~~~--~~~~l~~~f~~~~~~~~~ 523 (636)
T TIGR03117 460 LSTAAILRKA-QGGTLVLTTAFSHIS----------AIGQLVELGIP---AEIVIQSEKN--RLASAEQQFLALYANGIQ 523 (636)
T ss_pred HHHHHHHHHc-CCCEEEEechHHHHH----------HHHHHHHhhcC---CCEEEeCCCc--cHHHHHHHHHHhhcCCCC
Confidence 3344444443 468888888877644 46666655432 2345666543 34567888887 468
Q ss_pred cEEEEeccccccCCC----------CCCCeEEEecCCCC-------------------------ccccccccccCCCCCC
Q 024287 186 YLLVSTDIAARGIDL----------PETTHIYNFDLPRS-------------------------AIDYLHRAGRTGRKPF 230 (269)
Q Consensus 186 ~iLv~T~~~~~Gidi----------~~~~~Vi~~~~p~~-------------------------~~~~~qr~GR~gR~~~ 230 (269)
.||++|+.+++|||+ ...+.||...+|.. .-.+.|-+||.-|...
T Consensus 524 ~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~ 603 (636)
T TIGR03117 524 PVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPD 603 (636)
T ss_pred cEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCC
Confidence 899999999999999 23577887776632 1223588899999975
Q ss_pred CCCCeEEEEecCc
Q 024287 231 SDEKWTVTSIITS 243 (269)
Q Consensus 231 ~~~~g~~~~~~~~ 243 (269)
+...|.++++-..
T Consensus 604 D~~~G~i~ilD~R 616 (636)
T TIGR03117 604 MPQNRRIHMLDGR 616 (636)
T ss_pred CcCceEEEEEeCC
Confidence 4447866655433
No 145
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.30 E-value=1.5e-06 Score=66.53 Aligned_cols=86 Identities=22% Similarity=0.365 Sum_probs=55.1
Q ss_pred HHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec-
Q 024287 114 SLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD- 192 (269)
Q Consensus 114 ~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~- 192 (269)
++++. .++.++||++|.+.++. +.+.+.+.... .....+.. ....+..+++.|+.+.-.+|+++.
T Consensus 3 ~l~~~-~~g~~lv~f~Sy~~l~~----------~~~~~~~~~~~-~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~ 68 (167)
T PF13307_consen 3 ELISA-VPGGVLVFFPSYRRLEK----------VYERLKERLEE-KGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAG 68 (167)
T ss_dssp HHHHC-CSSEEEEEESSHHHHHH----------HHTT-TSS-E--ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETT
T ss_pred HHHhc-CCCCEEEEeCCHHHHHH----------HHHHHHhhccc-ccceeeec--CcchHHHHHHHHHhccCeEEEEEec
Confidence 34444 34899999999886444 44444433210 01223333 356778899999999999999999
Q ss_pred -cccccCCCCC--CCeEEEecCCC
Q 024287 193 -IAARGIDLPE--TTHIYNFDLPR 213 (269)
Q Consensus 193 -~~~~Gidi~~--~~~Vi~~~~p~ 213 (269)
.+.+|+|+|+ ++.||...+|.
T Consensus 69 g~~~EGiD~~~~~~r~vii~glPf 92 (167)
T PF13307_consen 69 GSFSEGIDFPGDLLRAVIIVGLPF 92 (167)
T ss_dssp SCCGSSS--ECESEEEEEEES---
T ss_pred ccEEEeecCCCchhheeeecCCCC
Confidence 8999999996 45788888774
No 146
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.28 E-value=6.2e-06 Score=74.89 Aligned_cols=127 Identities=20% Similarity=0.177 Sum_probs=100.0
Q ss_pred cchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcC
Q 024287 106 KMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQG 183 (269)
Q Consensus 106 ~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~ 183 (269)
..|...|..+|... ++.+++||..--.. ...+.-.|... ++....+.|..+-.+|+.++..|...
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqm----------LDILE~~L~~l---~~~ylRLDGsTqV~~RQ~lId~Fn~d 826 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQM----------LDILEVVLDTL---GYKYLRLDGSTQVNDRQDLIDEFNTD 826 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHH----------HHHHHHHHHhc---CceEEeecCCccchHHHHHHHhhccC
Confidence 45888888888765 46899999865321 33344445544 67888999999999999999999875
Q ss_pred C--ccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhH
Q 024287 184 G--GYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEEL 246 (269)
Q Consensus 184 ~--~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~ 246 (269)
+ .-+|++|-+.+-|||+-.+++||.+|.-.++-+=.|---||-|+|+. +.-.++-+++.+..
T Consensus 827 ~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQt-kpVtV~rLItk~TI 890 (941)
T KOG0389|consen 827 KDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQT-KPVTVYRLITKSTI 890 (941)
T ss_pred CceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCc-ceeEEEEEEecCcH
Confidence 4 45789999999999999999999999888777777877777777754 67788889987644
No 147
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.21 E-value=8.2e-06 Score=76.95 Aligned_cols=126 Identities=19% Similarity=0.197 Sum_probs=92.1
Q ss_pred CcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhc
Q 024287 105 KKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQ 182 (269)
Q Consensus 105 ~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~ 182 (269)
+..|+..|.-+|++. .+.+++||+.-.+. ..-+..||.-+ ++...-+.|..+-++|+..+++|..
T Consensus 1258 DcGKLQtLAiLLqQLk~eghRvLIfTQMtkm----------LDVLeqFLnyH---gylY~RLDg~t~vEqRQaLmerFNa 1324 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKSEGHRVLIFTQMTKM----------LDVLEQFLNYH---GYLYVRLDGNTSVEQRQALMERFNA 1324 (1958)
T ss_pred ccchHHHHHHHHHHHHhcCceEEehhHHHHH----------HHHHHHHHhhc---ceEEEEecCCccHHHHHHHHHHhcC
Confidence 445777776666654 46899999964332 34455666544 6778889999999999999999996
Q ss_pred CC--ccEEEEeccccccCCCCCCCeEEEecCCCCcccccc---ccccCCCCCCCCCCeEEEEecCchhHH
Q 024287 183 GG--GYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLH---RAGRTGRKPFSDEKWTVTSIITSEELF 247 (269)
Q Consensus 183 ~~--~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~q---r~GR~gR~~~~~~~g~~~~~~~~~~~~ 247 (269)
.. +-.+++|-..+.|||+-+++.||.||--+++.-=.| ||-|.|+. +.-++|-|++++..+
T Consensus 1325 D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt----RDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1325 DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT----RDVHIYRLISERTIE 1390 (1958)
T ss_pred CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc----cceEEEEeeccchHH
Confidence 44 446788999999999999999999998776543332 44444444 556899999876543
No 148
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.20 E-value=2.4e-05 Score=73.44 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=54.4
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhc-----CCCCceEEecccCChhHHHHHHHHHhc----CCccEEEE
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-----KGSSDVLLLEEEMNFNSRAASLLEVRQ----GGGYLLVS 190 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~v~~~h~~~~~~~r~~~~~~f~~----~~~~iLv~ 190 (269)
.++.++||++|....++ +.+.+.+.. ... ...+.-+ -...++.++++.|+. |.-.+|++
T Consensus 521 ~pgg~lvfFpSy~~l~~----------v~~~~~~~~~~~~i~~~-k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~a 588 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLEN----------IVSTWKEMGILENIEKK-KLIFVET-KDAQETSDALERYKQAVSEGRGAVLLS 588 (705)
T ss_pred CCCcEEEEccCHHHHHH----------HHHHHHhcCHHHHHhcC-CCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEE
Confidence 46899999999886444 444443210 001 1222222 222577889999964 45569999
Q ss_pred e--ccccccCCCCCC--CeEEEecCCC
Q 024287 191 T--DIAARGIDLPET--THIYNFDLPR 213 (269)
Q Consensus 191 T--~~~~~Gidi~~~--~~Vi~~~~p~ 213 (269)
+ ..+++|||+++- ..||.+++|.
T Consensus 589 v~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 589 VAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred ecCCcccCccccCCCCCcEEEEEccCC
Confidence 9 789999999874 7788898885
No 149
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.19 E-value=0.0001 Score=68.75 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=54.7
Q ss_pred ecCcchHHHHHHHHhh--cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHH-HHHHH
Q 024287 103 CGKKMKYQTLLSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA-ASLLE 179 (269)
Q Consensus 103 ~~~~~k~~~l~~ll~~--~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~-~~~~~ 179 (269)
.+...|..++.+-+.. ..+.|+||-|.|++. .+.+...|.+. +++...+++.-...+++ +++..
T Consensus 404 ~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~----------SE~ls~~L~~~---gi~h~vLNAk~~~~~~EA~IIA~ 470 (870)
T CHL00122 404 KDELSKWRAIADECLQMHQTGRPILIGTTTIEK----------SELLSQLLKEY---RLPHQLLNAKPENVRRESEIVAQ 470 (870)
T ss_pred eCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHH----------HHHHHHHHHHc---CCccceeeCCCccchhHHHHHHh
Confidence 3445677766655543 257899999999886 44577777776 56666666652112232 23332
Q ss_pred HhcCC-ccEEEEeccccccCCC
Q 024287 180 VRQGG-GYLLVSTDIAARGIDL 200 (269)
Q Consensus 180 f~~~~-~~iLv~T~~~~~Gidi 200 (269)
.|. -.|-|+|++++||.||
T Consensus 471 --AG~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 471 --AGRKGSITIATNMAGRGTDI 490 (870)
T ss_pred --cCCCCcEEEeccccCCCcCe
Confidence 454 5689999999999997
No 150
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=6.2e-06 Score=71.78 Aligned_cols=224 Identities=15% Similarity=0.145 Sum_probs=140.3
Q ss_pred eecCcccEEEEeccccccCCchhhhHHHHHHhhhccCC----------------------CccEEEEeccCCchhhHHHH
Q 024287 13 FKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCN----------------------NRQTVFASASIPQHRRFLHN 70 (269)
Q Consensus 13 ~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~----------------------~~q~i~~SATl~~~~~~l~~ 70 (269)
-.|+++.++|||.+|-++.. +|.++.-++.++...+ -+|+++||+--.+....+..
T Consensus 411 dfLSSIEl~iIDQa~~~l~Q--NwEhl~~ifdHLn~~P~k~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn 488 (698)
T KOG2340|consen 411 DFLSSIELLIIDQADIMLMQ--NWEHLLHIFDHLNLQPSKQHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFN 488 (698)
T ss_pred hhhhhhhhhhhhhHHHHHHh--hHHHHHHHHHHhhcCcccccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHH
Confidence 36899999999999976644 4888888887774211 27888888877666555544
Q ss_pred HHhhhcccCceeEEeec--CcccCCCcceeEEEE--ec-----CcchHHHHHHHH-hhc---CCCceEEEeeccchhhhh
Q 024287 71 CIQQKWTKSDVVHVHVN--AIKPLPSCLHHRFVI--CG-----KKMKYQTLLSLI-QSD---APESGIIFVGEQSEKSKK 137 (269)
Q Consensus 71 ~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~--~~-----~~~k~~~l~~ll-~~~---~~~~~lIF~~s~~~~~~~ 137 (269)
....+..+.-...--.. ........+.|.+.. +. .+.++......+ .+. ....++||.+|--.
T Consensus 489 ~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfD---- 564 (698)
T KOG2340|consen 489 QYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFD---- 564 (698)
T ss_pred HhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhh----
Confidence 33222221111110000 111112223333322 22 234555444333 222 23467999999653
Q ss_pred cCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecccc--ccCCCCCCCeEEEecCCCCc
Q 024287 138 AGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAA--RGIDLPETTHIYNFDLPRSA 215 (269)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~--~Gidi~~~~~Vi~~~~p~~~ 215 (269)
...+-.++.++ ++....+|.-.+...-....+.|..|...+|+-|.-+. +-.++.++..||.|.+|..+
T Consensus 565 ------FVRvRNy~K~e---~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P 635 (698)
T KOG2340|consen 565 ------FVRVRNYMKKE---EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNP 635 (698)
T ss_pred ------HHHHHHHhhhh---hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCc
Confidence 44566666665 45556667766666667788889999999999999763 67889999999999999988
Q ss_pred ccc---ccccccCCCCCC-CCCCeEEEEecCchhHHHHHH
Q 024287 216 IDY---LHRAGRTGRKPF-SDEKWTVTSIITSEELFVLQR 251 (269)
Q Consensus 216 ~~~---~qr~GR~gR~~~-~~~~g~~~~~~~~~~~~~~~~ 251 (269)
.-| +.+.+|+.-.|. ++....|.+++++.|.-.+..
T Consensus 636 ~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ 675 (698)
T KOG2340|consen 636 HFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLEN 675 (698)
T ss_pred HHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHH
Confidence 766 456666654442 224567888889888766543
No 151
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.09 E-value=7.8e-05 Score=68.89 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=50.5
Q ss_pred HHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecC------CC--C--
Q 024287 145 TLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDL------PR--S-- 214 (269)
Q Consensus 145 ~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~------p~--~-- 214 (269)
+.+.+.|.+.|++ ..+..+ +++.+++.|. ++..|||+|+..+.-+. ++++.|...|. |. .
T Consensus 441 er~eeeL~~~FP~-~~V~r~-------d~d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~E 510 (665)
T PRK14873 441 RRTAEELGRAFPG-VPVVTS-------GGDQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAE 510 (665)
T ss_pred HHHHHHHHHHCCC-CCEEEE-------ChHHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHH
Confidence 3455556555553 334332 2335788886 58999999993221111 45677665542 21 1
Q ss_pred --ccccccccccCCCCCCCCCCeEEEEecCch
Q 024287 215 --AIDYLHRAGRTGRKPFSDEKWTVTSIITSE 244 (269)
Q Consensus 215 --~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~ 244 (269)
...+.|-+||+||.. ..|.+++-..++
T Consensus 511 r~~qll~qvagragr~~---~~G~V~iq~~p~ 539 (665)
T PRK14873 511 DTLRRWMAAAALVRPRA---DGGQVVVVAESS 539 (665)
T ss_pred HHHHHHHHHHHhhcCCC---CCCEEEEEeCCC
Confidence 223356689999986 678877665444
No 152
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.01 E-value=3.5e-05 Score=74.17 Aligned_cols=125 Identities=19% Similarity=0.155 Sum_probs=100.5
Q ss_pred chHHHHHHHH-hhc--CCC--ceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHh
Q 024287 107 MKYQTLLSLI-QSD--APE--SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181 (269)
Q Consensus 107 ~k~~~l~~ll-~~~--~~~--~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~ 181 (269)
.|...+.+++ ... .+. +++||+.-... ...+...+... ++....++|+++.+.|...++.|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~----------l~il~~~l~~~---~~~~~~ldG~~~~~~r~~~i~~f~ 758 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPV----------LDLLEDYLKAL---GIKYVRLDGSTPAKRRQELIDRFN 758 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHH----------HHHHHHHHHhc---CCcEEEEeCCCChhhHHHHHHHhh
Confidence 5777777777 332 344 89999998664 34456666655 367889999999999999999999
Q ss_pred cC--CccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchh
Q 024287 182 QG--GGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEE 245 (269)
Q Consensus 182 ~~--~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~ 245 (269)
++ ..-.++++.+.+.|+|+-..++||++|..+++....|...|+-|.|+. +.-.++-++..+.
T Consensus 759 ~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~-~~v~v~r~i~~~t 823 (866)
T COG0553 759 ADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQK-RPVKVYRLITRGT 823 (866)
T ss_pred cCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCc-ceeEEEEeecCCc
Confidence 86 355678888999999999999999999999999999999999998865 5666777877654
No 153
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.95 E-value=8.2e-05 Score=68.73 Aligned_cols=90 Identities=13% Similarity=0.184 Sum_probs=59.3
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCC
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDL 200 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi 200 (269)
+..+-||++|...++. +.++.... ...+..++|..+..+ + +. =++.+|++-|+++..|+++
T Consensus 282 gknIcvfsSt~~~~~~----------v~~~~~~~---~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 282 GKNICVFSSTVSFAEI----------VARFCARF---TKKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSF 342 (824)
T ss_pred CCcEEEEeChHHHHHH----------HHHHHHhc---CCeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEecc
Confidence 4667889988774332 44444433 456888888766552 2 11 2468999999999999999
Q ss_pred CCCCe--EEEecCC----CCccccccccccCCCCC
Q 024287 201 PETTH--IYNFDLP----RSAIDYLHRAGRTGRKP 229 (269)
Q Consensus 201 ~~~~~--Vi~~~~p----~~~~~~~qr~GR~gR~~ 229 (269)
...+. |.-|=-| .+..+..|++||+-...
T Consensus 343 ~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~ 377 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL 377 (824)
T ss_pred chhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc
Confidence 75532 3322112 45667899999997775
No 154
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=97.94 E-value=3.2e-05 Score=69.77 Aligned_cols=129 Identities=17% Similarity=0.157 Sum_probs=101.8
Q ss_pred CcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhc
Q 024287 105 KKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQ 182 (269)
Q Consensus 105 ~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~ 182 (269)
+..|+..|-.+|... .+.++++|+.--+. ...+.++|--. +++..-+.|.....+|..++.+|..
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM----------~dl~EdYl~yr---~Y~ylRLDGSsk~~dRrd~vrDwQ~ 1092 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKM----------IDLIEDYLVYR---GYTYLRLDGSSKASDRRDVVRDWQA 1092 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHH----------HHHHHHHHHhh---ccceEEecCcchhhHHHHHHhhccC
Confidence 345777777777654 45799999864332 34455666443 6889999999999999999999998
Q ss_pred CC-ccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHH
Q 024287 183 GG-GYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELF 247 (269)
Q Consensus 183 ~~-~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~ 247 (269)
.+ +-.|++|-+.+.|||+..++.||.||..+++..=.|-..|+-|.|+. +.-.+|-+++.+..+
T Consensus 1093 sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQT-rdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1093 SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQT-RDVTVYRLITRGTVE 1157 (1185)
T ss_pred CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCc-cceeeeeecccccHH
Confidence 66 55789999999999999999999999999999889988999888854 556678888765443
No 155
>COG4889 Predicted helicase [General function prediction only]
Probab=97.87 E-value=4.3e-06 Score=76.85 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=90.9
Q ss_pred CceEEEeeccchhhhhcCCCCchHHHHH-HHhhhcCCCCceEEec--ccCChhHHHHHHHH---HhcCCccEEEEecccc
Q 024287 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVD-FLSNSYKGSSDVLLLE--EEMNFNSRAASLLE---VRQGGGYLLVSTDIAA 195 (269)
Q Consensus 122 ~~~lIF~~s~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~v~~~h--~~~~~~~r~~~~~~---f~~~~~~iLv~T~~~~ 195 (269)
.+.|-||.+.++-.++++.+..+.+.+. .+.+.+ .++.+.+=| |.|+..+|+..++. |...+.+||--.-.+.
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~-~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLS 539 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDF-KNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLS 539 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-CCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhh
Confidence 3788999999988888877766555444 454443 345665555 89999999655544 3445678888888899
Q ss_pred ccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEe
Q 024287 196 RGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240 (269)
Q Consensus 196 ~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~ 240 (269)
+|+|+|..+.||.|+.-.+..+.+|-+||+-|-......|.+++-
T Consensus 540 EGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILP 584 (1518)
T COG4889 540 EGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILP 584 (1518)
T ss_pred cCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEE
Confidence 999999999999999999999999999999998655566776653
No 156
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.84 E-value=0.00055 Score=64.21 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=55.5
Q ss_pred cCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHH-HHHHHH
Q 024287 104 GKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA-ASLLEV 180 (269)
Q Consensus 104 ~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~-~~~~~f 180 (269)
....|..++.+-+... .+.|+||-+.|++. .+.+...|.+. +++...++......+++ +++..
T Consensus 420 t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~----------SE~ls~~L~~~---gi~h~vLNAk~~~~~~EA~IIa~- 485 (939)
T PRK12902 420 TEIAKWRAVANETAEMHKQGRPVLVGTTSVEK----------SELLSALLQEQ---GIPHNLLNAKPENVEREAEIVAQ- 485 (939)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHH----------HHHHHHHHHHc---CCchheeeCCCcchHhHHHHHHh-
Confidence 4456777777666532 57899999999885 44577778776 56555666652222333 33332
Q ss_pred hcCC-ccEEEEeccccccCCCC
Q 024287 181 RQGG-GYLLVSTDIAARGIDLP 201 (269)
Q Consensus 181 ~~~~-~~iLv~T~~~~~Gidi~ 201 (269)
.|. -.|-|+|++++||.||.
T Consensus 486 -AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 486 -AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred -cCCCCcEEEeccCCCCCcCEe
Confidence 455 56899999999999873
No 157
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.75 E-value=5e-05 Score=59.11 Aligned_cols=66 Identities=29% Similarity=0.427 Sum_probs=50.0
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHH
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLH 69 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~ 69 (269)
|+++.+.+.........++++|+||+|.+.... ....+..++..+. ...+++++|||.++......
T Consensus 113 ~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~--~~~~~v~~saT~~~~~~~~~ 178 (201)
T smart00487 113 PGRLLDLLENDLLELSNVDLVILDEAHRLLDGG-FGDQLEKLLKLLP--KNVQLLLLSATPPEEIENLL 178 (201)
T ss_pred hHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCC-cHHHHHHHHHhCC--ccceEEEEecCCchhHHHHH
Confidence 356677777777788899999999999876533 4467777776653 68999999999987655444
No 158
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.48 E-value=0.00043 Score=64.65 Aligned_cols=127 Identities=20% Similarity=0.150 Sum_probs=97.6
Q ss_pred cchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-------------------CCCceEEe
Q 024287 106 KMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-------------------GSSDVLLL 164 (269)
Q Consensus 106 ~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~v~~~ 164 (269)
..|.-.|+++|+.. .+++.|||..|.. ++..+..+|.-.-. .+.....+
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~----------SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyri 1194 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLI----------SLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRL 1194 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccc----------hhHHHHHHHHhhcccCccccccccccccccceecCCceEEe
Confidence 34677888888754 4799999999865 35556666542211 12245678
Q ss_pred cccCChhHHHHHHHHHhcCC-cc---EEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEe
Q 024287 165 EEEMNFNSRAASLLEVRQGG-GY---LLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240 (269)
Q Consensus 165 h~~~~~~~r~~~~~~f~~~~-~~---iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~ 240 (269)
.|......|.++.+.|.+.. .+ .||+|-+...|+|+-.++.||.||..++++-=.|-+=|+-|.|+. ....+|-|
T Consensus 1195 DGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQt-KPvyiYRf 1273 (1567)
T KOG1015|consen 1195 DGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQT-KPVYIYRF 1273 (1567)
T ss_pred cCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCc-Cceeehhh
Confidence 89999999999999999753 32 799999999999999999999999999999889999999999853 45556656
Q ss_pred cCc
Q 024287 241 ITS 243 (269)
Q Consensus 241 ~~~ 243 (269)
+..
T Consensus 1274 iAq 1276 (1567)
T KOG1015|consen 1274 IAQ 1276 (1567)
T ss_pred hhc
Confidence 544
No 159
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.36 E-value=0.0006 Score=63.96 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=98.2
Q ss_pred chHHHHHHHHhhcC--CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCC
Q 024287 107 MKYQTLLSLIQSDA--PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGG 184 (269)
Q Consensus 107 ~k~~~l~~ll~~~~--~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~ 184 (269)
.|++.|..+|.+.+ +.+++.||.-..- ...+..+|.-. ++....+.|.....+|-..++.|....
T Consensus 710 GKfELLDRiLPKLkatgHRVLlF~qMTrl----------mdimEdyL~~~---~~kYlRLDG~TK~~eRg~ll~~FN~Pd 776 (1157)
T KOG0386|consen 710 GKFELLDRILPKLKATGHRVLLFSQMTRL----------MDILEDYLQIR---EYKYLRLDGQTKVEERGDLLEIFNAPD 776 (1157)
T ss_pred cHHHHHHhhhHHHHhcCcchhhHHHHHHH----------HHHHHHHHhhh---hhheeeecCCcchhhHHHHHHHhcCCC
Confidence 46677777776543 6799999975332 33456666544 678899999999999999999999754
Q ss_pred ---ccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchh
Q 024287 185 ---GYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEE 245 (269)
Q Consensus 185 ---~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~ 245 (269)
..+|.+|-+.+.|+|+..++.||.||.-+++....|+--|+-|.|.. ..-.++.+++...
T Consensus 777 s~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~-~evRv~rl~tv~s 839 (1157)
T KOG0386|consen 777 SPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQK-KEVRVLRLITVNS 839 (1157)
T ss_pred CceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhch-hheeeeeeehhhH
Confidence 45789999999999999999999999999999999999998888854 4555666665443
No 160
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.34 E-value=0.00045 Score=64.11 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=78.1
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC----CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccc
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK----GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAAR 196 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~ 196 (269)
.+-+++|.+-=.. ...+..++.+... ..+.+...|+.....+..++.+....|..++++.|...+-
T Consensus 643 ~gailvflpgwa~----------i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaet 712 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAE----------IMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAET 712 (1282)
T ss_pred ccceeeecCchHH----------hhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeE
Confidence 4567788775432 2224444433221 2346788999999888888988888899999999999998
Q ss_pred cCCCCCCCeEEEecCC------------------CCccccccccccCCCCCCCCCCeEEEEecCc
Q 024287 197 GIDLPETTHIYNFDLP------------------RSAIDYLHRAGRTGRKPFSDEKWTVTSIITS 243 (269)
Q Consensus 197 Gidi~~~~~Vi~~~~p------------------~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~ 243 (269)
.+.+.++.+||+-+.- .+.....||-||+||. +.|.|..+.+.
T Consensus 713 siTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv----R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 713 SITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV----RPGFCFHLCSR 773 (1282)
T ss_pred eeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee----cccccccccHH
Confidence 8888887777754411 2455668999999999 67877776654
No 161
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.27 E-value=0.0018 Score=47.96 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=38.9
Q ss_pred EecccCChhHHHHHHHHHhcCCc-cEEEEeccccccCCCCCC--CeEEEecCCC
Q 024287 163 LLEEEMNFNSRAASLLEVRQGGG-YLLVSTDIAARGIDLPET--THIYNFDLPR 213 (269)
Q Consensus 163 ~~h~~~~~~~r~~~~~~f~~~~~-~iLv~T~~~~~Gidi~~~--~~Vi~~~~p~ 213 (269)
.+..+....+..++++.|+.... .||++|..+++|+|+|+. +.||...+|.
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 34445555567889999987553 799999889999999975 5788777663
No 162
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.20 E-value=0.0018 Score=48.02 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=36.3
Q ss_pred ecccCChhHHHHHHHHHhcCCc---cEEEEecc--ccccCCCCCC--CeEEEecCCC
Q 024287 164 LEEEMNFNSRAASLLEVRQGGG---YLLVSTDI--AARGIDLPET--THIYNFDLPR 213 (269)
Q Consensus 164 ~h~~~~~~~r~~~~~~f~~~~~---~iLv~T~~--~~~Gidi~~~--~~Vi~~~~p~ 213 (269)
+..+....+..++++.|++... .||+++.- +++|+|+|+- +.||..++|.
T Consensus 24 ~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 24 FIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 3333334455788999987544 69999887 8999999985 5788877763
No 163
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.09 E-value=0.00076 Score=49.13 Aligned_cols=55 Identities=27% Similarity=0.356 Sum_probs=33.7
Q ss_pred hhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccC
Q 024287 4 LCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61 (269)
Q Consensus 4 l~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl 61 (269)
+...+..........+++|+||+|.+............. .. .....+++++|||+
T Consensus 90 ~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~-~~--~~~~~~~i~~saTp 144 (144)
T cd00046 90 LLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKIL-LK--LPKDRQVLLLSATP 144 (144)
T ss_pred HHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHH-hh--CCccceEEEEeccC
Confidence 444444444456688899999999776554221111111 11 24788999999994
No 164
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.08 E-value=0.0028 Score=52.06 Aligned_cols=81 Identities=21% Similarity=0.189 Sum_probs=60.6
Q ss_pred HHHHHHhcCCccEEEEeccccccCCCCCC--------CeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecC--ch
Q 024287 175 ASLLEVRQGGGYLLVSTDIAARGIDLPET--------THIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIIT--SE 244 (269)
Q Consensus 175 ~~~~~f~~~~~~iLv~T~~~~~Gidi~~~--------~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~--~~ 244 (269)
...+.|.+|+..|+|.|++.+.|+.+... .+-|...+|+++...+|.+||+-|.++-...... .+++ +.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~-~l~t~~~g 130 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYR-FLVTDLPG 130 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEE-EeecCCHH
Confidence 45678999999999999999999988753 3566788999999999999999999864222222 2333 35
Q ss_pred hHHHHHHHHHHh
Q 024287 245 ELFVLQRYENEL 256 (269)
Q Consensus 245 ~~~~~~~~~~~~ 256 (269)
|......+.+.+
T Consensus 131 E~Rfas~va~rL 142 (278)
T PF13871_consen 131 ERRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHHH
Confidence 666666666555
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=96.95 E-value=0.0015 Score=48.08 Aligned_cols=51 Identities=18% Similarity=0.430 Sum_probs=28.0
Q ss_pred ceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchh
Q 024287 12 IFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHR 65 (269)
Q Consensus 12 ~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~ 65 (269)
...+.+.+++|+||+|. .+.. .. .....+..+.......+|++|||.|...
T Consensus 90 p~~~~~yd~II~DEcH~-~Dp~-sI-A~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 90 PCRLKNYDVIIMDECHF-TDPT-SI-AARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp SSCTTS-SEEEECTTT---SHH-HH-HHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred cccccCccEEEEecccc-CCHH-HH-hhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 45678999999999995 3332 11 2222333332234578999999988653
No 166
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.83 E-value=0.0043 Score=58.77 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=22.3
Q ss_pred HHHHhCceecCcccEEEEeccccccCC
Q 024287 6 QLIEKHIFKLESVQVLVIDEVDFLFNS 32 (269)
Q Consensus 6 ~~l~~~~~~l~~~~~lViDE~~~l~~~ 32 (269)
.-+..|.++++++..+||||||++...
T Consensus 20 ~DlL~~ri~~~~itgiiv~~Ahr~~~~ 46 (814)
T TIGR00596 20 VDLLTGIIPPELITGILVLRADRIIES 46 (814)
T ss_pred hHHhcCCCCHHHccEEEEeeccccccc
Confidence 345668899999999999999998544
No 167
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.76 E-value=0.0063 Score=55.42 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=74.5
Q ss_pred HHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhc--CCccE-EEEeccccccCCCCCCCeEEEecCCCCccccccccc
Q 024287 147 LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQ--GGGYL-LVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAG 223 (269)
Q Consensus 147 ~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~--~~~~i-Lv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~G 223 (269)
+...|++. +.....+||....++|+.+++.|.. |..+| |+.-.+.+.|+|+-..+++|..|+.+++.--.|-+.
T Consensus 762 v~~hi~~~---g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcD 838 (901)
T KOG4439|consen 762 VRKHIQKG---GHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACD 838 (901)
T ss_pred HHHHHhhC---CeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHH
Confidence 44556655 7788999999999999999999975 43454 566677789999999999999999999999999999
Q ss_pred cCCCCCCCCCCeEEEEecCc
Q 024287 224 RTGRKPFSDEKWTVTSIITS 243 (269)
Q Consensus 224 R~gR~~~~~~~g~~~~~~~~ 243 (269)
|+-|+|+. +.-.++-|...
T Consensus 839 RIYR~GQk-K~V~IhR~~~~ 857 (901)
T KOG4439|consen 839 RIYRMGQK-KDVFIHRLMCK 857 (901)
T ss_pred HHHHhccc-CceEEEEEEec
Confidence 99999954 33344445544
No 168
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.63 E-value=0.035 Score=52.17 Aligned_cols=122 Identities=17% Similarity=0.305 Sum_probs=73.4
Q ss_pred CcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhc
Q 024287 105 KKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQ 182 (269)
Q Consensus 105 ~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~ 182 (269)
.+.|+.++.+-+... .++|+||-+.+.+.. +.+.+.|.+. +++-..+...-. +++.-+-. ..
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~S----------E~ls~~L~~~---~i~h~VLNAk~h--~~EA~Iia-~A 474 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKS----------ELLSKLLRKA---GIPHNVLNAKNH--AREAEIIA-QA 474 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecc----------hhHHHHHHhc---CCCceeeccccH--HHHHHHHh-hc
Confidence 345777766666543 578999999998864 3466777655 443334444433 33322222 23
Q ss_pred CC-ccEEEEeccccccCCCCCCCe---EEE------ecCCCCccccc--cccccCCCCCCCCCCeEEEEecCchh
Q 024287 183 GG-GYLLVSTDIAARGIDLPETTH---IYN------FDLPRSAIDYL--HRAGRTGRKPFSDEKWTVTSIITSEE 245 (269)
Q Consensus 183 ~~-~~iLv~T~~~~~Gidi~~~~~---Vi~------~~~p~~~~~~~--qr~GR~gR~~~~~~~g~~~~~~~~~~ 245 (269)
|. -.+-|+|+++++|-||.--.. |.- .+...+.+..+ |--||+||+| ..|..-++++-.|
T Consensus 475 G~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG---DpG~S~F~lSleD 546 (822)
T COG0653 475 GQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG---DPGSSRFYLSLED 546 (822)
T ss_pred CCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC---CcchhhhhhhhHH
Confidence 44 457899999999999743321 111 12223333333 6789999999 6777777766443
No 169
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.34 E-value=0.045 Score=51.03 Aligned_cols=93 Identities=18% Similarity=0.175 Sum_probs=71.8
Q ss_pred cchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcC
Q 024287 106 KMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQG 183 (269)
Q Consensus 106 ~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~ 183 (269)
..|.+...+++... .++++||.++.... +..+.+.+++.|.. ..+..+||++++.+|.+.+....+|
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~l----------t~q~~~rl~~~f~~-~~v~~lhS~l~~~~R~~~w~~~~~G 239 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRD----------VDRLEAALRALLGA-GDVAVLSAGLGPADRYRRWLAVLRG 239 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhh----------HHHHHHHHHHHcCC-CcEEEECCCCCHHHHHHHHHHHhCC
Confidence 46777777777643 46789999999885 55677888887752 4688999999999999999999999
Q ss_pred CccEEEEeccccccCCCCCCCeEEEec
Q 024287 184 GGYLLVSTDIAARGIDLPETTHIYNFD 210 (269)
Q Consensus 184 ~~~iLv~T~~~~~Gidi~~~~~Vi~~~ 210 (269)
+.+|+|.|-...- .=+++...||..+
T Consensus 240 ~~~IViGtRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 240 QARVVVGTRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred CCcEEEEcceeEE-eccCCCCEEEEEc
Confidence 9999999987542 2255666777544
No 170
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.96 E-value=0.027 Score=52.64 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=71.3
Q ss_pred ecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHH
Q 024287 103 CGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV 180 (269)
Q Consensus 103 ~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f 180 (269)
++-..|.+...+++.+. .++++||-++.+.. +..+.+.+...|. .++..+||++++.+|...+.+.
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~L----------tpq~~~rf~~rFg--~~v~vlHS~Ls~~er~~~W~~~ 292 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIAL----------TPQLLARFKARFG--AKVAVLHSGLSPGERYRVWRRA 292 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccc----------hHHHHHHHHHHhC--CChhhhcccCChHHHHHHHHHH
Confidence 34566888888887654 46789999999875 5567777777775 5789999999999999999999
Q ss_pred hcCCccEEEEeccccccCCCCCCCeEE
Q 024287 181 RQGGGYLLVSTDIAARGIDLPETTHIY 207 (269)
Q Consensus 181 ~~~~~~iLv~T~~~~~Gidi~~~~~Vi 207 (269)
++|+.+|+|.|-.+- -.=+++..+||
T Consensus 293 ~~G~~~vVIGtRSAl-F~Pf~~LGLII 318 (730)
T COG1198 293 RRGEARVVIGTRSAL-FLPFKNLGLII 318 (730)
T ss_pred hcCCceEEEEechhh-cCchhhccEEE
Confidence 999999999998643 12245555555
No 171
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.90 E-value=0.029 Score=52.73 Aligned_cols=78 Identities=12% Similarity=0.128 Sum_probs=61.4
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC-CCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc-ccc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG-SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA-ARG 197 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~-~~G 197 (269)
.+.+++|.++|+.-|.. +++.+++.+.. +..+..+||+++..+|.++++.+.+|+..|+|+|... ...
T Consensus 309 ~g~q~lilaPT~~LA~Q----------~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~ 378 (681)
T PRK10917 309 AGYQAALMAPTEILAEQ----------HYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD 378 (681)
T ss_pred cCCeEEEEeccHHHHHH----------HHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc
Confidence 45689999999887655 44444443322 5789999999999999999999999999999999864 445
Q ss_pred CCCCCCCeEE
Q 024287 198 IDLPETTHIY 207 (269)
Q Consensus 198 idi~~~~~Vi 207 (269)
+.+.++.+||
T Consensus 379 v~~~~l~lvV 388 (681)
T PRK10917 379 VEFHNLGLVI 388 (681)
T ss_pred chhcccceEE
Confidence 7788888877
No 172
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.032 Score=53.22 Aligned_cols=79 Identities=19% Similarity=0.216 Sum_probs=57.4
Q ss_pred hHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEE-ecccCChhHHHHHHHHHhcCCcc
Q 024287 108 KYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLL-LEEEMNFNSRAASLLEVRQGGGY 186 (269)
Q Consensus 108 k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~h~~~~~~~r~~~~~~f~~~~~~ 186 (269)
.+-.+..+.-..+++++.+.++|..-+.++ ...+..+-.... +..+.. +||.|+.+++++.+++|.+|+.+
T Consensus 112 Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~------~~kl~~~~e~~~--~~~~~~~yh~~l~~~ekee~le~i~~gdfd 183 (1187)
T COG1110 112 TFGLLMSLYLAKKGKRVYIIVPTTTLVRQV------YERLKKFAEDAG--SLDVLVVYHSALPTKEKEEALERIESGDFD 183 (1187)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHH------HHHHHHHHhhcC--CcceeeeeccccchHHHHHHHHHHhcCCcc
Confidence 444556666666778999999998865553 233333333321 233333 99999999999999999999999
Q ss_pred EEEEeccc
Q 024287 187 LLVSTDIA 194 (269)
Q Consensus 187 iLv~T~~~ 194 (269)
|||+|+.+
T Consensus 184 IlitTs~F 191 (1187)
T COG1110 184 ILITTSQF 191 (1187)
T ss_pred EEEEeHHH
Confidence 99999975
No 173
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.65 E-value=0.084 Score=46.59 Aligned_cols=124 Identities=17% Similarity=0.141 Sum_probs=85.4
Q ss_pred chHHHHHHHHhh----cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhc
Q 024287 107 MKYQTLLSLIQS----DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQ 182 (269)
Q Consensus 107 ~k~~~l~~ll~~----~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~ 182 (269)
-|+++|.+-+.. ...-+.|||..--.. ...+.-.|.+. |+.+.-+-|+|++..|.+.++.|++
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSm----------LDLi~~rL~ka---GfscVkL~GsMs~~ardatik~F~n 686 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSM----------LDLIEWRLGKA---GFSCVKLVGSMSPAARDATIKYFKN 686 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHH----------HHHHHHHhhcc---CceEEEeccCCChHHHHHHHHHhcc
Confidence 366666655532 223477888764221 22233334443 7888899999999999999999997
Q ss_pred C-Ccc-EEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCch
Q 024287 183 G-GGY-LLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSE 244 (269)
Q Consensus 183 ~-~~~-iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~ 244 (269)
. ..+ .|++-.+.+..+|+..+..|+..|+=++++--.|--.|.-|-|+. +.-.++.|+-+.
T Consensus 687 d~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~-rPvkvvrf~iEn 749 (791)
T KOG1002|consen 687 DIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQY-RPVKVVRFCIEN 749 (791)
T ss_pred CCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCc-cceeEEEeehhc
Confidence 4 344 467777788889999999999999777877777766666666544 555666666544
No 174
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.63 E-value=0.088 Score=49.49 Aligned_cols=92 Identities=12% Similarity=0.155 Sum_probs=66.0
Q ss_pred cchHHHHHHHHhh--cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcC
Q 024287 106 KMKYQTLLSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQG 183 (269)
Q Consensus 106 ~~k~~~l~~ll~~--~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~ 183 (269)
..|.......+.. ..+.+++|.++++..+. .+.+.+++.+ +..+..+||+++..+|.+.+....+|
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~----------Q~~~~l~~~f--g~~v~~~~s~~s~~~r~~~~~~~~~g 240 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTP----------QMLARFRARF--GAPVAVLHSGLSDGERLDEWRKAKRG 240 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHH----------HHHHHHHHHh--CCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 3465555444432 13578999999988643 3566666654 35789999999999999999999999
Q ss_pred CccEEEEeccccccCCCCCCCeEEEec
Q 024287 184 GGYLLVSTDIAARGIDLPETTHIYNFD 210 (269)
Q Consensus 184 ~~~iLv~T~~~~~Gidi~~~~~Vi~~~ 210 (269)
..+|+|+|.... -..+.+..+||.-+
T Consensus 241 ~~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 241 EAKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred CCCEEEeccHHh-cccccCCCEEEEEC
Confidence 999999998543 24466777777443
No 175
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.52 E-value=0.09 Score=47.63 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=64.3
Q ss_pred chHHHHHHHHhh--cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCC
Q 024287 107 MKYQTLLSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGG 184 (269)
Q Consensus 107 ~k~~~l~~ll~~--~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~ 184 (269)
.|......++.. ..+++++|.++++.-+ ..+.+.+++.+. ..+..+||+++..+|.+.+.+..+|+
T Consensus 9 GKT~v~l~~i~~~l~~g~~vLvlvP~i~L~----------~Q~~~~l~~~f~--~~v~vlhs~~~~~er~~~~~~~~~g~ 76 (505)
T TIGR00595 9 GKTEVYLQAIEKVLALGKSVLVLVPEIALT----------PQMIQRFKYRFG--SQVAVLHSGLSDSEKLQAWRKVKNGE 76 (505)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCcHHHH----------HHHHHHHHHHhC--CcEEEEECCCCHHHHHHHHHHHHcCC
Confidence 455555444432 2356899999998753 346666666553 46889999999999999999999999
Q ss_pred ccEEEEeccccccCCCCCCCeEEE
Q 024287 185 GYLLVSTDIAARGIDLPETTHIYN 208 (269)
Q Consensus 185 ~~iLv~T~~~~~Gidi~~~~~Vi~ 208 (269)
.+|+|+|...-. .-+++..+||.
T Consensus 77 ~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 77 ILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred CCEEECChHHHc-CcccCCCEEEE
Confidence 999999986432 34566777774
No 176
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.29 E-value=0.052 Score=50.61 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=61.0
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC-CCceEEecccCChhHHHHHHHHHhcCCccEEEEecccc-cc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG-SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAA-RG 197 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~-~G 197 (269)
.+.+++|-++++.-|.. +++.+.+.+.. +..+..+||+++..+|...++...+|+..|+|+|..+- ..
T Consensus 283 ~g~qvlilaPT~~LA~Q----------~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~ 352 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQ----------HYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK 352 (630)
T ss_pred cCCcEEEECCHHHHHHH----------HHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc
Confidence 35689999999886555 44444444332 57899999999999999999999999999999999764 35
Q ss_pred CCCCCCCeEE
Q 024287 198 IDLPETTHIY 207 (269)
Q Consensus 198 idi~~~~~Vi 207 (269)
+.+.++.+||
T Consensus 353 ~~~~~l~lvV 362 (630)
T TIGR00643 353 VEFKRLALVI 362 (630)
T ss_pred ccccccceEE
Confidence 6677777776
No 177
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.04 E-value=0.15 Score=46.82 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=66.4
Q ss_pred HHHHHHhhc-CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC-CCceEEecccCChhHHHHHHHHHhcCCccEE
Q 024287 111 TLLSLIQSD-APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG-SSDVLLLEEEMNFNSRAASLLEVRQGGGYLL 188 (269)
Q Consensus 111 ~l~~ll~~~-~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iL 188 (269)
++..++... .+.|+..-.+|.=-|+. .+..+.+.+.+ ++.+.++.|.+....|.++++...+|+..++
T Consensus 300 A~laml~ai~~G~Q~ALMAPTEILA~Q----------H~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~iv 369 (677)
T COG1200 300 ALLAMLAAIEAGYQAALMAPTEILAEQ----------HYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIV 369 (677)
T ss_pred HHHHHHHHHHcCCeeEEeccHHHHHHH----------HHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEE
Confidence 333344333 45689999998665544 34444444432 6889999999999999999999999999999
Q ss_pred EEeccc-cccCCCCCCCeEEE
Q 024287 189 VSTDIA-ARGIDLPETTHIYN 208 (269)
Q Consensus 189 v~T~~~-~~Gidi~~~~~Vi~ 208 (269)
|.|.++ -..+++.+.-+||.
T Consensus 370 VGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 370 VGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred EEcchhhhcceeecceeEEEE
Confidence 999987 46788888888873
No 178
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.92 E-value=0.011 Score=59.08 Aligned_cols=57 Identities=25% Similarity=0.405 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCC
Q 024287 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKP 229 (269)
Q Consensus 173 r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~ 229 (269)
+.+++..|......+|+.|.++..|+|++.++.++.++.|....+|+|..||+-+..
T Consensus 343 ~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 343 QAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccch
Confidence 567899999999999999999999999999999999999999999999999987765
No 179
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=94.50 E-value=1.3 Score=43.57 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=49.6
Q ss_pred cCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCC-CCCeEEEEecC
Q 024287 182 QGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS-DEKWTVTSIIT 242 (269)
Q Consensus 182 ~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~-~~~g~~~~~~~ 242 (269)
....++||.++.+--|.|-|..+.+. +|-|----..+|-+.|+.|.-.. ...|.++.|..
T Consensus 591 ~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 591 DDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred CCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 45689999999999999999876655 67777777889999999999655 36788888887
No 180
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=94.14 E-value=0.057 Score=44.87 Aligned_cols=45 Identities=31% Similarity=0.279 Sum_probs=31.4
Q ss_pred cEEEEeccccccCCc-------hhhhHHHHHHhhhccCCCccEEEEeccCCchhh
Q 024287 19 QVLVIDEVDFLFNSS-------KQVSSLKKLLASYSSCNNRQTVFASASIPQHRR 66 (269)
Q Consensus 19 ~~lViDE~~~l~~~~-------~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~ 66 (269)
.++||||+|+.-... .....+.++.+.+ ++.+++..|||-..+.+
T Consensus 174 gvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L---P~ARvvY~SATgasep~ 225 (303)
T PF13872_consen 174 GVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL---PNARVVYASATGASEPR 225 (303)
T ss_pred ceEEeccchhcCCCCccCccccHHHHHHHHHHHhC---CCCcEEEecccccCCCc
Confidence 399999999875443 1234555566665 67889999999765544
No 181
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.95 E-value=0.18 Score=48.89 Aligned_cols=79 Identities=10% Similarity=0.113 Sum_probs=60.7
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC-CCceEEecccCChhHHHHHHHHHhcCCccEEEEecccc-cc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG-SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAA-RG 197 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~-~G 197 (269)
.+.+++|.++|+.-|.. +++.+.+.+.. +..+..++|..+..++.++++.+++|+..|+|+|..+. ..
T Consensus 499 ~g~qvlvLvPT~~LA~Q----------~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~ 568 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQ----------HFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKD 568 (926)
T ss_pred hCCeEEEEeCcHHHHHH----------HHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCC
Confidence 35789999999887555 44545444332 45678899999999999999999999999999998553 45
Q ss_pred CCCCCCCeEEE
Q 024287 198 IDLPETTHIYN 208 (269)
Q Consensus 198 idi~~~~~Vi~ 208 (269)
+.+.++.++|.
T Consensus 569 v~f~~L~llVI 579 (926)
T TIGR00580 569 VKFKDLGLLII 579 (926)
T ss_pred CCcccCCEEEe
Confidence 77788887773
No 182
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=93.89 E-value=0.52 Score=44.16 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=80.5
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC---CC------------CceEEecccCChhHHHHHHHHHhcCC-
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK---GS------------SDVLLLEEEMNFNSRAASLLEVRQGG- 184 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~---~~------------~~v~~~h~~~~~~~r~~~~~~f~~~~- 184 (269)
+.++|||..+.. ....+.+.+.+.-. ++ ....-+.|..+..+|++.++.|.+..
T Consensus 719 g~kil~fSq~l~----------~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~ 788 (1387)
T KOG1016|consen 719 GEKILIFSQNLT----------ALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPG 788 (1387)
T ss_pred CceEEEeecchh----------HHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCC
Confidence 456777777654 24556666644322 11 12345678888999999999998642
Q ss_pred --ccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecC
Q 024287 185 --GYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIIT 242 (269)
Q Consensus 185 --~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~ 242 (269)
.-++++|-+...|||+-+.+.++.||+-+++.-=.|-+-|+-|.|+. +...+|-++-
T Consensus 789 lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~-KpcfvYRlVm 847 (1387)
T KOG1016|consen 789 LSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQ-KPCFVYRLVM 847 (1387)
T ss_pred ceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCc-CceeEEeehh
Confidence 34778899999999999999999999988888888888888898854 5566665554
No 183
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=93.70 E-value=0.32 Score=39.43 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=69.7
Q ss_pred hHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCC----ccEEEEeccccccCCCCCCCeEEEecCCCCccccc
Q 024287 144 TTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGG----GYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYL 219 (269)
Q Consensus 144 ~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~----~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~ 219 (269)
..++.+.|.+....++.+..++|+.+... -.+.++. ..|+|+=+.++||+.+++..+.....-+....+++
T Consensus 96 ~~ei~~~l~~~~~~~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~ 170 (239)
T PF10593_consen 96 WEEIKPELPKAISDGIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLM 170 (239)
T ss_pred HHHHHHHHHHHHhcCceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHH
Confidence 45566666655554577888887765533 3344443 77999999999999999999988888888888888
Q ss_pred cccccCC-CCCCCCCCeEEEEecCchhHHHHHH
Q 024287 220 HRAGRTG-RKPFSDEKWTVTSIITSEELFVLQR 251 (269)
Q Consensus 220 qr~GR~g-R~~~~~~~g~~~~~~~~~~~~~~~~ 251 (269)
||.=..| |.| ..+.|=++.++.-...+..
T Consensus 171 QmgRwFGYR~g---Y~dl~Ri~~~~~l~~~f~~ 200 (239)
T PF10593_consen 171 QMGRWFGYRPG---YEDLCRIYMPEELYDWFRH 200 (239)
T ss_pred HHhhcccCCcc---cccceEEecCHHHHHHHHH
Confidence 8854444 444 4566777777654444443
No 184
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.53 E-value=0.097 Score=48.82 Aligned_cols=79 Identities=22% Similarity=0.221 Sum_probs=59.5
Q ss_pred HHHhcCCccEEEEeccccccCCCCCCCeEE--------EecCCCCccccccccccCCCCCCCCCCeEEEEecC-chhHHH
Q 024287 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIY--------NFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIIT-SEELFV 248 (269)
Q Consensus 178 ~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi--------~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~-~~~~~~ 248 (269)
++|.+|+..|-|-+++...||-+.+-..|+ ...+|++...-+|.+||+-|..+-+....++++.+ .++..+
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErRF 930 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRF 930 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchHH
Confidence 468999999999999999999998776655 47799999999999999999986544554444333 355555
Q ss_pred HHHHHHHh
Q 024287 249 LQRYENEL 256 (269)
Q Consensus 249 ~~~~~~~~ 256 (269)
...+.+.|
T Consensus 931 AS~VAKRL 938 (1300)
T KOG1513|consen 931 ASIVAKRL 938 (1300)
T ss_pred HHHHHHHH
Confidence 55555544
No 185
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.06 E-value=0.3 Score=48.59 Aligned_cols=78 Identities=10% Similarity=0.112 Sum_probs=58.7
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC-CCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc-ccc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG-SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA-ARG 197 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~-~~G 197 (269)
.+.+++|.++|+.-|.. +++.+.+.+.. +..+..++|..+..++.++++.+++|...|+|+|..+ ...
T Consensus 648 ~g~qvlvLvPT~eLA~Q----------~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~ 717 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQ----------HYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSD 717 (1147)
T ss_pred cCCeEEEEeCcHHHHHH----------HHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCC
Confidence 46789999999886554 44445443322 3567889999999999999999999999999999754 344
Q ss_pred CCCCCCCeEE
Q 024287 198 IDLPETTHIY 207 (269)
Q Consensus 198 idi~~~~~Vi 207 (269)
+.+.++.++|
T Consensus 718 v~~~~L~lLV 727 (1147)
T PRK10689 718 VKWKDLGLLI 727 (1147)
T ss_pred CCHhhCCEEE
Confidence 6666777766
No 186
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=92.65 E-value=0.055 Score=51.68 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=28.1
Q ss_pred Cchh-hHHHHhCceecCcc-------cEEEEeccccccCC
Q 024287 1 MGSL-CQLIEKHIFKLESV-------QVLVIDEVDFLFNS 32 (269)
Q Consensus 1 pgrl-~~~l~~~~~~l~~~-------~~lViDE~~~l~~~ 32 (269)
|||| .|+++.+.+.++.. .++|+||||.|+-+
T Consensus 191 PgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLiD 230 (970)
T PRK12899 191 ASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILID 230 (970)
T ss_pred CChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhhh
Confidence 8999 99999998888855 89999999988744
No 187
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=91.39 E-value=0.51 Score=47.17 Aligned_cols=64 Identities=8% Similarity=0.064 Sum_probs=46.9
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC-CCc---eEEecccCChhHHHHHHHHHhcCCccEEEEecc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG-SSD---VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI 193 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~---v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 193 (269)
.+.+++|.++|+.-|..+ .+.+.+.... ++. +..+||+++..++...++.+++|...|+|+|+.
T Consensus 120 ~g~~vLIL~PTreLa~Qi----------~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQV----------AEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred cCCeEEEEeCHHHHHHHH----------HHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 357899999999976663 3333322210 222 446899999999988899999998999999985
No 188
>PRK14701 reverse gyrase; Provisional
Probab=91.28 E-value=0.99 Score=46.66 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=49.2
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhc---CCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY---KGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI 193 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 193 (269)
.+.+++|.++|+.-+.. +.+.+.... ..+..+..+||+++..++.+.++.+++|...|+|+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Q----------i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQ----------TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHH----------HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 45689999999997655 333333321 12356788999999999999999999999999999985
No 189
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=91.28 E-value=0.24 Score=41.31 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=30.9
Q ss_pred ecCcccEEEEeccccccCCc-hhhhHHHHHHhhhccCCCccEEEEe
Q 024287 14 KLESVQVLVIDEVDFLFNSS-KQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~-~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
.--+++++||||+|.++.-. .....+...++.+.......+|+++
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred HHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEec
Confidence 34467899999999987654 2334555666666555677888776
No 190
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=90.87 E-value=0.14 Score=41.68 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=25.9
Q ss_pred CchhhHHHHhCceecCcccEEEEeccc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVD 27 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~ 27 (269)
||||..++..+.+.++++.+||+|--|
T Consensus 185 P~Rl~kLle~~~L~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 185 PGRLSKLLENGALSLSNLKRIVLDWSY 211 (252)
T ss_pred hHHHHHHHHcCCCCcccCeEEEEcCCc
Confidence 999999999999999999999999866
No 191
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=90.54 E-value=5.8 Score=36.99 Aligned_cols=96 Identities=15% Similarity=0.145 Sum_probs=50.5
Q ss_pred CcchHHHHHHHHhh---cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC----CCCceEEecccCChhHHHHHH
Q 024287 105 KKMKYQTLLSLIQS---DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK----GSSDVLLLEEEMNFNSRAASL 177 (269)
Q Consensus 105 ~~~k~~~l~~ll~~---~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~v~~~h~~~~~~~r~~~~ 177 (269)
....+..|...+.. ..++.+|+|++|.+= ...+.+.+.+... .+-+-.++-...+ -+.++
T Consensus 610 s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~y----------L~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl 676 (821)
T KOG1133|consen 610 SPEMIKDLGSSISNLSNAVPGGVVCFFPSYAY----------LGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVL 676 (821)
T ss_pred ChHHHHHHHHHHHHHHhhCCCcEEEEeccHHH----------HHHHHHHHHhcchHHHhhccchhhccCccc---HHHHH
Confidence 33444455555543 346999999999652 2223333332210 0111222322222 24456
Q ss_pred HHHh----cCCccEEEEe--ccccccCCCCCC--CeEEEecCCC
Q 024287 178 LEVR----QGGGYLLVST--DIAARGIDLPET--THIYNFDLPR 213 (269)
Q Consensus 178 ~~f~----~~~~~iLv~T--~~~~~Gidi~~~--~~Vi~~~~p~ 213 (269)
+.+. .|.-.+|++. --+.+|||+.+- ..|+-.++|.
T Consensus 677 ~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 677 EGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPY 720 (821)
T ss_pred HHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCC
Confidence 6654 3444455554 346789999653 6788888775
No 192
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.10 E-value=1.7 Score=39.65 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=50.8
Q ss_pred eEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec-----ccccc-
Q 024287 124 GIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD-----IAARG- 197 (269)
Q Consensus 124 ~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~-----~~~~G- 197 (269)
+||.++|++-|..+ ......+..... ++.+..++|+++...+. +.++.| ..|+|+|+ .+.++
T Consensus 102 aLil~PTRELA~Qi-------~~~~~~~~~~~~-~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~ 169 (513)
T COG0513 102 ALILAPTRELAVQI-------AEELRKLGKNLG-GLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGK 169 (513)
T ss_pred eEEECCCHHHHHHH-------HHHHHHHHhhcC-CccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCC
Confidence 89999999987763 223333333221 46689999999877765 445556 89999998 35555
Q ss_pred CCCCCCCeEEE
Q 024287 198 IDLPETTHIYN 208 (269)
Q Consensus 198 idi~~~~~Vi~ 208 (269)
+++..+.++|.
T Consensus 170 l~l~~v~~lVl 180 (513)
T COG0513 170 LDLSGVETLVL 180 (513)
T ss_pred cchhhcCEEEe
Confidence 78888888773
No 193
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=89.73 E-value=0.9 Score=37.76 Aligned_cols=46 Identities=22% Similarity=0.125 Sum_probs=27.1
Q ss_pred ccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccC-CchhhHHH
Q 024287 18 VQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI-PQHRRFLH 69 (269)
Q Consensus 18 ~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl-~~~~~~l~ 69 (269)
.+++|+||+|.+-... ......+..+ .....+++|||. ++....+.
T Consensus 135 ~~~vIvDEaH~~k~~~---s~~~~~l~~l---~~~~~~lLSgTP~~n~~~dl~ 181 (299)
T PF00176_consen 135 WDRVIVDEAHRLKNKD---SKRYKALRKL---RARYRWLLSGTPIQNSLEDLY 181 (299)
T ss_dssp EEEEEETTGGGGTTTT---SHHHHHHHCC---CECEEEEE-SS-SSSGSHHHH
T ss_pred ceeEEEeccccccccc---cccccccccc---ccceEEeeccccccccccccc
Confidence 6699999999773222 3333334334 367889999995 44444443
No 194
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=89.31 E-value=1.7 Score=42.69 Aligned_cols=78 Identities=8% Similarity=0.118 Sum_probs=62.5
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC-CCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc-ccc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG-SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA-ARG 197 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~-~~G 197 (269)
.+.|+.|.++|-=- +...++.+.+.+.+ ..++..+..-.+.++..++++..++|++.|+|.|..+ ..+
T Consensus 642 ~GKQVAvLVPTTlL----------A~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kd 711 (1139)
T COG1197 642 DGKQVAVLVPTTLL----------AQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKD 711 (1139)
T ss_pred CCCeEEEEcccHHh----------HHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCC
Confidence 46799999999554 34467777777763 3456778788889999999999999999999999965 677
Q ss_pred CCCCCCCeEE
Q 024287 198 IDLPETTHIY 207 (269)
Q Consensus 198 idi~~~~~Vi 207 (269)
+-+.+.-++|
T Consensus 712 v~FkdLGLlI 721 (1139)
T COG1197 712 VKFKDLGLLI 721 (1139)
T ss_pred cEEecCCeEE
Confidence 8888888777
No 195
>PRK06893 DNA replication initiation factor; Validated
Probab=88.90 E-value=0.65 Score=37.41 Aligned_cols=50 Identities=14% Similarity=0.266 Sum_probs=32.0
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCch
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQH 64 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~ 64 (269)
.+++.+++++||+|.+.........+..+++... ..+.+++++|++.++.
T Consensus 88 ~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~-~~~~~illits~~~p~ 137 (229)
T PRK06893 88 NLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIK-EQGKTLLLISADCSPH 137 (229)
T ss_pred hcccCCEEEEeChhhhcCChHHHHHHHHHHHHHH-HcCCcEEEEeCCCChH
Confidence 3567889999999976544322235566666553 2345677888877554
No 196
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=88.85 E-value=0.2 Score=46.96 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=27.9
Q ss_pred Cchh-hHHHHhC------ceecCcccEEEEeccccccCCc
Q 024287 1 MGSL-CQLIEKH------IFKLESVQVLVIDEVDFLFNSS 33 (269)
Q Consensus 1 pgrl-~~~l~~~------~~~l~~~~~lViDE~~~l~~~~ 33 (269)
|||| .|.|+.+ .+.++.+.++|+||+|+++-+.
T Consensus 153 ~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDe 192 (745)
T TIGR00963 153 NNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDE 192 (745)
T ss_pred CCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHh
Confidence 7889 8999887 4688999999999999887533
No 197
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=88.56 E-value=1.9 Score=40.63 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=48.9
Q ss_pred hcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhh--cCCCCceEEecccCChhHHHHHHHHHhcC--CccEEEEecc
Q 024287 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS--YKGSSDVLLLEEEMNFNSRAASLLEVRQG--GGYLLVSTDI 193 (269)
Q Consensus 118 ~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~v~~~h~~~~~~~r~~~~~~f~~~--~~~iLv~T~~ 193 (269)
...+++.+|.|++-. +..++.+. +.+.+.|..|||.. .+|.++...++++ .+.|||+|..
T Consensus 445 ~g~~gpHLVVvPsST--------------leNWlrEf~kwCPsl~Ve~YyGSq--~ER~~lR~~i~~~~~~ydVllTTY~ 508 (941)
T KOG0389|consen 445 IGNPGPHLVVVPSST--------------LENWLREFAKWCPSLKVEPYYGSQ--DERRELRERIKKNKDDYDVLLTTYN 508 (941)
T ss_pred cCCCCCcEEEecchh--------------HHHHHHHHHHhCCceEEEeccCcH--HHHHHHHHHHhccCCCccEEEEEee
Confidence 345789999999743 55555432 33568899999985 7888899999876 6889999998
Q ss_pred cccc
Q 024287 194 AARG 197 (269)
Q Consensus 194 ~~~G 197 (269)
++.|
T Consensus 509 la~~ 512 (941)
T KOG0389|consen 509 LAAS 512 (941)
T ss_pred cccC
Confidence 8765
No 198
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=87.91 E-value=0.79 Score=32.89 Aligned_cols=36 Identities=39% Similarity=0.458 Sum_probs=21.6
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEec
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASA 59 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SA 59 (269)
.++||||+|.+. .. ..++.+ ..+....+.++++++.
T Consensus 89 ~~lviDe~~~l~-~~---~~l~~l-~~l~~~~~~~vvl~G~ 124 (131)
T PF13401_consen 89 VLLVIDEADHLF-SD---EFLEFL-RSLLNESNIKVVLVGT 124 (131)
T ss_dssp EEEEEETTHHHH-TH---HHHHHH-HHHTCSCBEEEEEEES
T ss_pred eEEEEeChHhcC-CH---HHHHHH-HHHHhCCCCeEEEEEC
Confidence 699999999864 22 333333 2232246677777764
No 199
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=87.81 E-value=0.98 Score=36.13 Aligned_cols=89 Identities=17% Similarity=0.211 Sum_probs=49.0
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCC
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLP 93 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (269)
.+...+++++|++|.+......-..+..+++.+. ..+.++++.|...|..+..+...+..++.
T Consensus 94 ~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~-~~~k~li~ts~~~P~~l~~~~~~L~SRl~---------------- 156 (219)
T PF00308_consen 94 RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLI-ESGKQLILTSDRPPSELSGLLPDLRSRLS---------------- 156 (219)
T ss_dssp HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHH-HTTSEEEEEESS-TTTTTTS-HHHHHHHH----------------
T ss_pred hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHH-hhCCeEEEEeCCCCccccccChhhhhhHh----------------
Confidence 4678899999999976544322355666666554 24668888887777765433332322221
Q ss_pred CcceeEEEEecCcchHHHHHHHHhhc
Q 024287 94 SCLHHRFVICGKKMKYQTLLSLIQSD 119 (269)
Q Consensus 94 ~~i~~~~~~~~~~~k~~~l~~ll~~~ 119 (269)
.++.......+.+.+...+.......
T Consensus 157 ~Gl~~~l~~pd~~~r~~il~~~a~~~ 182 (219)
T PF00308_consen 157 WGLVVELQPPDDEDRRRILQKKAKER 182 (219)
T ss_dssp CSEEEEE----HHHHHHHHHHHHHHT
T ss_pred hcchhhcCCCCHHHHHHHHHHHHHHh
Confidence 11222222234566777777766643
No 200
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=87.74 E-value=0.3 Score=46.70 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=26.3
Q ss_pred Cchh-hHHHHhC-ceec-----CcccEEEEeccccccC
Q 024287 1 MGSL-CQLIEKH-IFKL-----ESVQVLVIDEVDFLFN 31 (269)
Q Consensus 1 pgrl-~~~l~~~-~~~l-----~~~~~lViDE~~~l~~ 31 (269)
|||| .|.|+.+ .+++ +.+.++|+||+|.++=
T Consensus 179 ~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI 216 (896)
T PRK13104 179 NNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILI 216 (896)
T ss_pred ChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhh
Confidence 8999 9999988 4556 5999999999998863
No 201
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=87.34 E-value=4.1 Score=31.74 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=45.8
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc-----
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI----- 193 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~----- 193 (269)
.+.+++|.++++..+.. ....+..... .+..+..++|+.+..++....+ +...++|+|..
T Consensus 68 ~~~~viii~p~~~L~~q----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~ 133 (203)
T cd00268 68 DGPQALILAPTRELALQ----------IAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDL 133 (203)
T ss_pred CCceEEEEcCCHHHHHH----------HHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHH
Confidence 45689999999886554 2222222211 2567888999988765543322 56789999952
Q ss_pred cccc-CCCCCCCeEE
Q 024287 194 AARG-IDLPETTHIY 207 (269)
Q Consensus 194 ~~~G-idi~~~~~Vi 207 (269)
+..+ .++++.+++|
T Consensus 134 l~~~~~~~~~l~~lI 148 (203)
T cd00268 134 LERGKLDLSKVKYLV 148 (203)
T ss_pred HHcCCCChhhCCEEE
Confidence 2222 5667777766
No 202
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=85.03 E-value=4.6 Score=37.83 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=47.4
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec-----cc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD-----IA 194 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~-----~~ 194 (269)
...++||.+++++-|..++ ..+.. +.... .+..+..+||+.+...+... ++ +...|+|+|. .+
T Consensus 73 ~~~~~LIL~PTreLa~Qv~------~~l~~-~~~~~-~~i~v~~~~gG~~~~~q~~~---l~-~~~~IVVgTPgrl~d~l 140 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVA------EAMTD-FSKHM-RGVNVVALYGGQRYDVQLRA---LR-QGPQIVVGTPGRLLDHL 140 (629)
T ss_pred CCCeEEEEeCcHHHHHHHH------HHHHH-HHhhc-CCceEEEEECCcCHHHHHHH---hc-CCCCEEEECHHHHHHHH
Confidence 3468999999998766632 22222 22222 25678899999876554332 22 3577999995 33
Q ss_pred cc-cCCCCCCCeEE
Q 024287 195 AR-GIDLPETTHIY 207 (269)
Q Consensus 195 ~~-Gidi~~~~~Vi 207 (269)
.+ .+++.++.+||
T Consensus 141 ~r~~l~l~~l~~lV 154 (629)
T PRK11634 141 KRGTLDLSKLSGLV 154 (629)
T ss_pred HcCCcchhhceEEE
Confidence 33 36777777766
No 203
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=83.99 E-value=0.47 Score=44.84 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=24.1
Q ss_pred Cchh-hHHHHhC------ceecCcccEEEEeccccccCC
Q 024287 1 MGSL-CQLIEKH------IFKLESVQVLVIDEVDFLFNS 32 (269)
Q Consensus 1 pgrl-~~~l~~~------~~~l~~~~~lViDE~~~l~~~ 32 (269)
||+| .+.|+.+ ...++.+.++|+||||.++-+
T Consensus 172 p~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiD 210 (762)
T TIGR03714 172 NSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLD 210 (762)
T ss_pred chhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhc
Confidence 7888 5666442 456789999999999988644
No 204
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=83.72 E-value=1.4 Score=36.81 Aligned_cols=53 Identities=13% Similarity=0.342 Sum_probs=37.9
Q ss_pred eecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHH
Q 024287 13 FKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLH 69 (269)
Q Consensus 13 ~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~ 69 (269)
...+-++++|+||||.|.... +..+.+.++... ....+++++.-+..-+..+.
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda--q~aLrr~mE~~s--~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA--QAALRRTMEDFS--RTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred CCCCcceEEEEechhhhhHHH--HHHHHHHHhccc--cceEEEEEcCChhhCChHHH
Confidence 355667899999999775444 678888888754 77888888876555444443
No 205
>PRK08084 DNA replication initiation factor; Provisional
Probab=83.65 E-value=1.9 Score=34.80 Aligned_cols=47 Identities=11% Similarity=0.207 Sum_probs=26.1
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
.+++++++||+|.+.........+..++.......+.++ ++|++.|+
T Consensus 96 ~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~l-i~ts~~~p 142 (235)
T PRK08084 96 EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRL-LITGDRPP 142 (235)
T ss_pred hhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeE-EEeCCCCh
Confidence 446799999999765433222445555555432223344 44555554
No 206
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=83.52 E-value=2.6 Score=37.61 Aligned_cols=54 Identities=15% Similarity=0.288 Sum_probs=33.0
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHH
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLH 69 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~ 69 (269)
+++.+++++||+|.+.........+..+++.+. ..+.|+++.|.+.|..+..+.
T Consensus 200 ~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~-~~~k~IIlts~~~p~~l~~l~ 253 (445)
T PRK12422 200 YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLH-TEGKLIVISSTCAPQDLKAME 253 (445)
T ss_pred cccCCEEEEcchhhhcCChhhHHHHHHHHHHHH-HCCCcEEEecCCCHHHHhhhH
Confidence 567899999999976544333345556655443 234566666655555544343
No 207
>PRK08727 hypothetical protein; Validated
Probab=83.18 E-value=3.1 Score=33.56 Aligned_cols=50 Identities=10% Similarity=0.216 Sum_probs=28.7
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCch
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQH 64 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~ 64 (269)
.+.+.++||+||+|.+..+......+..+++... ..+.++++.|...|..
T Consensus 90 ~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~-~~~~~vI~ts~~~p~~ 139 (233)
T PRK08727 90 ALEGRSLVALDGLESIAGQREDEVALFDFHNRAR-AAGITLLYTARQMPDG 139 (233)
T ss_pred HHhcCCEEEEeCcccccCChHHHHHHHHHHHHHH-HcCCeEEEECCCChhh
Confidence 4567789999999976544422234555555443 2344555555444443
No 208
>PRK05642 DNA replication initiation factor; Validated
Probab=83.02 E-value=1.8 Score=34.97 Aligned_cols=47 Identities=17% Similarity=0.317 Sum_probs=29.2
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
+.+++++|+|++|.+.........+..+++... .+...++++++.++
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~--~~g~~ilits~~~p 141 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLR--DSGRRLLLAASKSP 141 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHH--hcCCEEEEeCCCCH
Confidence 556789999999966443322345677776654 33344666666544
No 209
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=82.98 E-value=2.8 Score=37.56 Aligned_cols=48 Identities=25% Similarity=0.430 Sum_probs=27.7
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
.+.++++|++||+|.+.........+..++..+. ..+.++++ +++.++
T Consensus 208 ~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~-~~~~~iii-ts~~~p 255 (450)
T PRK00149 208 KYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALH-EAGKQIVL-TSDRPP 255 (450)
T ss_pred HHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHH-HCCCcEEE-ECCCCH
Confidence 3457889999999976543322245555555543 23445555 555444
No 210
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=82.25 E-value=1.6 Score=37.73 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=22.3
Q ss_pred ecCcccEEEEeccccccCCc------hhhhHHHHHHhh
Q 024287 14 KLESVQVLVIDEVDFLFNSS------KQVSSLKKLLAS 45 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~------~~~~~i~~i~~~ 45 (269)
.....+++||||||++...+ .....+..++..
T Consensus 80 ~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 80 EKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred cCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 45788999999999998732 123556666643
No 211
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.11 E-value=5.1 Score=36.06 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=47.2
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI 193 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 193 (269)
.+.+||.+++++-+.. ....+... +..+..++|+.+..++..++...+.|..+++++|+-
T Consensus 51 ~~~~lVi~P~~~L~~d----------q~~~l~~~---gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 51 DGITLVISPLISLMED----------QVLQLKAS---GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred CCcEEEEecHHHHHHH----------HHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 4678999999875332 34445544 678889999999999999999999999999999874
No 212
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=80.99 E-value=3.2 Score=38.45 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=33.5
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHH
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFL 68 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l 68 (269)
+.++++|+|||+|.+.........+..+++.+. ..+.++|+.|-..|..+..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~-e~gk~IIITSd~~P~eL~~l 427 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLH-NANKQIVLSSDRPPKQLVTL 427 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHH-hcCCCEEEecCCChHhhhhc
Confidence 567899999999977554432355666776664 34567776555555544433
No 213
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=80.75 E-value=7.6 Score=37.47 Aligned_cols=50 Identities=18% Similarity=0.104 Sum_probs=36.7
Q ss_pred EEeccccccCCCCC----------------------C----------CeEEEecCCCCcccccc--ccccCCCCCCCCCC
Q 024287 189 VSTDIAARGIDLPE----------------------T----------THIYNFDLPRSAIDYLH--RAGRTGRKPFSDEK 234 (269)
Q Consensus 189 v~T~~~~~Gidi~~----------------------~----------~~Vi~~~~p~~~~~~~q--r~GR~gR~~~~~~~ 234 (269)
++|+..+.|+|+|. + ++||.|++-.+...-+| |.||.||.
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r~------ 504 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLRP------ 504 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCCC------
Confidence 66888889999997 4 89999996666666666 67776665
Q ss_pred eEEEEecCch
Q 024287 235 WTVTSIITSE 244 (269)
Q Consensus 235 g~~~~~~~~~ 244 (269)
+.+|+++..+
T Consensus 505 ~rVyfL~y~~ 514 (814)
T TIGR00596 505 LRVYFLYYGG 514 (814)
T ss_pred cEEEEEEECC
Confidence 4677777543
No 214
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=80.63 E-value=3.1 Score=36.61 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=26.8
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
+.+.++|++||+|.+.........+..++..+. ..+.++++ +++.++
T Consensus 197 ~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~-~~~~~iii-ts~~~p 243 (405)
T TIGR00362 197 YRSVDLLLIDDIQFLAGKERTQEEFFHTFNALH-ENGKQIVL-TSDRPP 243 (405)
T ss_pred HHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHH-HCCCCEEE-ecCCCH
Confidence 456789999999976544322234555555443 23455555 555443
No 215
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=80.25 E-value=2 Score=32.47 Aligned_cols=56 Identities=13% Similarity=0.250 Sum_probs=36.1
Q ss_pred ecCcccEEEEeccccccCCc-hhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHH
Q 024287 14 KLESVQVLVIDEVDFLFNSS-KQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNC 71 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~-~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~ 71 (269)
....+++||+||+-..+..+ -....+.++++..+ ...-+|+.+-..|+.+..+++.
T Consensus 92 ~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp--~~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 92 ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP--EDLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC--CCCEEEEECCCCCHHHHHhCce
Confidence 34567899999998776666 22345555555432 5567777777777776555543
No 216
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=80.13 E-value=3.3 Score=37.10 Aligned_cols=50 Identities=26% Similarity=0.398 Sum_probs=31.0
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchh
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHR 65 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~ 65 (269)
+.++++||+||+|.+.........+..+++.+. ..+.|+++.|-..|...
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~-~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI-ENDKQLFFSSDKSPELL 253 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHH-HcCCcEEEECCCCHHHH
Confidence 567899999999966543333355666666654 23456666655544444
No 217
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=79.19 E-value=7.2 Score=34.63 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=47.9
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc------c
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI------A 194 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~------~ 194 (269)
+.+++|.+++++-|..++ . ....+... .+..+..++|+.+...+...+ .+...|+|+|.- .
T Consensus 73 ~~~~lil~Pt~eLa~Q~~------~-~~~~l~~~--~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~ 139 (434)
T PRK11192 73 PPRILILTPTRELAMQVA------D-QARELAKH--THLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIK 139 (434)
T ss_pred CceEEEECCcHHHHHHHH------H-HHHHHHcc--CCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHH
Confidence 357999999998766531 1 12222222 246789999999876654433 346789999972 1
Q ss_pred cccCCCCCCCeEEE
Q 024287 195 ARGIDLPETTHIYN 208 (269)
Q Consensus 195 ~~Gidi~~~~~Vi~ 208 (269)
...+++.++++||.
T Consensus 140 ~~~~~~~~v~~lVi 153 (434)
T PRK11192 140 EENFDCRAVETLIL 153 (434)
T ss_pred cCCcCcccCCEEEE
Confidence 24466777777763
No 218
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=78.92 E-value=9.9 Score=34.48 Aligned_cols=95 Identities=11% Similarity=0.117 Sum_probs=61.0
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec-----ccc
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD-----IAA 195 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~-----~~~ 195 (269)
.+.+||-++||+.|..+ ......+.... .+...+++|+.+...+..-+ +. -..|+|+|. .++
T Consensus 165 ~P~vLVL~PTRELA~QV-------~~~~~~~~~~~--~~~~~cvyGG~~~~~Q~~~l---~~-gvdiviaTPGRl~d~le 231 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQV-------QAEAREFGKSL--RLRSTCVYGGAPKGPQLRDL---ER-GVDVVIATPGRLIDLLE 231 (519)
T ss_pred CCeEEEEcCcHHHHHHH-------HHHHHHHcCCC--CccEEEEeCCCCccHHHHHH---hc-CCcEEEeCChHHHHHHH
Confidence 45799999999977663 33333333221 24588999999877654333 32 356999997 345
Q ss_pred cc-CCCCCCCeEE--------EecCCCCccccccccccCCCC
Q 024287 196 RG-IDLPETTHIY--------NFDLPRSAIDYLHRAGRTGRK 228 (269)
Q Consensus 196 ~G-idi~~~~~Vi--------~~~~p~~~~~~~qr~GR~gR~ 228 (269)
.| +|+..+.+++ +.++.......+.+++|..|+
T Consensus 232 ~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQ 273 (519)
T KOG0331|consen 232 EGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQ 273 (519)
T ss_pred cCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCccc
Confidence 55 6777787777 344555666667777766663
No 219
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=78.81 E-value=9.5 Score=34.20 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=47.4
Q ss_pred CceEEEeeccchhhhhcCCCCchHHHHHHHhhhc--CCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec-----cc
Q 024287 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY--KGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD-----IA 194 (269)
Q Consensus 122 ~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~-----~~ 194 (269)
.+++|.++|++-|..+ .+.+.... ..+..+..++|+.+...+...++ ....|+|+|. .+
T Consensus 73 ~~~lil~PtreLa~Q~----------~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l 138 (460)
T PRK11776 73 VQALVLCPTRELADQV----------AKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHL 138 (460)
T ss_pred ceEEEEeCCHHHHHHH----------HHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHH
Confidence 4799999999876553 33332221 12467888999998766543332 4678999995 23
Q ss_pred c-ccCCCCCCCeEEE
Q 024287 195 A-RGIDLPETTHIYN 208 (269)
Q Consensus 195 ~-~Gidi~~~~~Vi~ 208 (269)
. ..+++.+++++|.
T Consensus 139 ~~~~~~l~~l~~lVi 153 (460)
T PRK11776 139 RKGTLDLDALNTLVL 153 (460)
T ss_pred HcCCccHHHCCEEEE
Confidence 3 3467778887773
No 220
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=78.60 E-value=2.9 Score=32.02 Aligned_cols=55 Identities=13% Similarity=0.276 Sum_probs=36.0
Q ss_pred CcccEEEEeccccccCCc-hhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHH
Q 024287 16 ESVQVLVIDEVDFLFNSS-KQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCI 72 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~-~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~ 72 (269)
..+++||+||+-..++.+ -....+.++++.- +...-+|+.+-..|+.+..+++.+
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r--p~~~evVlTGR~~p~~l~e~AD~V 151 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQER--PGHQHVIITGRGCPQDLLELADLV 151 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC--CCCCEEEEECCCCCHHHHHhCcee
Confidence 456799999998777766 1223455555543 356677777777787766555433
No 221
>PRK09401 reverse gyrase; Reviewed
Probab=78.12 E-value=9.7 Score=38.48 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=43.8
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCc--eEEecccCChhHHHHHHHHHhcCCccEEEEec
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSD--VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD 192 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~--v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~ 192 (269)
.+.+++|.++|+.-+.. +.+.+++... .+.. +...|++++..++.+..+.++.|...|+|+|.
T Consensus 122 ~g~~alIL~PTreLa~Q----------i~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp 187 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQ----------VVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTS 187 (1176)
T ss_pred cCCeEEEEeccHHHHHH----------HHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECH
Confidence 46789999999997655 3333333322 1223 34456667778888888899989999999996
No 222
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=77.38 E-value=26 Score=25.70 Aligned_cols=79 Identities=11% Similarity=0.012 Sum_probs=38.8
Q ss_pred HHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCcc
Q 024287 109 YQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGY 186 (269)
Q Consensus 109 ~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~ 186 (269)
...+..++.+. .+.+++|+|.+.+++ ..+.+.|...-+.++ .=|+-.... ......
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a----------~~lD~~LW~~~~~sF---lPH~~~~~~---------~~~~~P 72 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQA----------EALDELLWTFSPDSF---LPHGLAGEP---------PAARQP 72 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHH----------HHHHHHTTTSSTT-------EEETT-S---------STT--S
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHH----------HHHHHHHHCCCCCCC---CCCcccCCC---------CCCCCe
Confidence 46777777643 578999999998864 448888876633322 223322111 112247
Q ss_pred EEEEeccccccCCCCCCCeEEEecC
Q 024287 187 LLVSTDIAARGIDLPETTHIYNFDL 211 (269)
Q Consensus 187 iLv~T~~~~~Gidi~~~~~Vi~~~~ 211 (269)
|+++++... -..+..+++||.+.
T Consensus 73 V~i~~~~~~--~~~~~~~vLinL~~ 95 (137)
T PF04364_consen 73 VLITWDQEA--NPNNHADVLINLSG 95 (137)
T ss_dssp EEEE-TTS------S--SEEEE--S
T ss_pred EEEecCccc--CCCCCCCEEEECCC
Confidence 999988643 12344688998873
No 223
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=77.26 E-value=18 Score=26.91 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=46.5
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChh-HHHHHHHHHhcCCccEEEEeccc---
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFN-SRAASLLEVRQGGGYLLVSTDIA--- 194 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~-~r~~~~~~f~~~~~~iLv~T~~~--- 194 (269)
+..++++.++++..++. ..+.+.+.+. .+..+..+|++.+.. +....+ .+...++|+|..-
T Consensus 43 ~~~~~lii~P~~~l~~q----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~ 108 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQ----------QFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLD 108 (169)
T ss_dssp SSSEEEEEESSHHHHHH----------HHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHH
T ss_pred CCceEEEEeeccccccc----------ccccccccccccccccccccccccccccccccc----cccccccccCcchhhc
Confidence 44689999999987655 3444444433 256788899988754 222222 5678899998742
Q ss_pred ---cccCCCCCCCeEE
Q 024287 195 ---ARGIDLPETTHIY 207 (269)
Q Consensus 195 ---~~Gidi~~~~~Vi 207 (269)
....++..+++||
T Consensus 109 ~~~~~~~~~~~~~~iV 124 (169)
T PF00270_consen 109 LISNGKINISRLSLIV 124 (169)
T ss_dssp HHHTTSSTGTTESEEE
T ss_pred cccccccccccceeec
Confidence 1224566666666
No 224
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=77.01 E-value=4.6 Score=31.50 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=35.3
Q ss_pred CcccEEEEeccccccCCc-hhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHH
Q 024287 16 ESVQVLVIDEVDFLFNSS-KQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCI 72 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~-~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~ 72 (269)
...++||+||+-..++.+ -....+.++++.- +...-+|+.+-..|+.+..+++.+
T Consensus 114 ~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r--p~~~evVlTGR~~p~~Lie~ADlV 169 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGYLDVEEVLEALNAR--PGMQHVVITGRGAPRELIEAADLV 169 (191)
T ss_pred CCCCEEEEehhhHHHHCCCccHHHHHHHHHcC--CCCCEEEEECCCCCHHHHHhCchh
Confidence 456799999999877776 1223444455442 255677777777787766555544
No 225
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=76.80 E-value=5.9 Score=35.36 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=29.3
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHH
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFL 68 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l 68 (269)
+.+++++||+|.+.+.......+..++..+. ..+.++++.|..-|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~-~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHH-HcCCeEEEECCCCHHHHHHH
Confidence 5789999999977654322234555555543 23456555554444444433
No 226
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=76.66 E-value=18 Score=32.76 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=53.6
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc-------
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI------- 193 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~------- 193 (269)
..++||.|+|++-|..+ -.+...|.... .+.++..-||++-+.++++++ ....|+|+|+-
T Consensus 252 ~TRVLVL~PTRELaiQv-------~sV~~qlaqFt--~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATPGRlIDHlr 318 (691)
T KOG0338|consen 252 ATRVLVLVPTRELAIQV-------HSVTKQLAQFT--DITVGLAVGGLDLKAQEAVLR----SRPDIVIATPGRLIDHLR 318 (691)
T ss_pred ceeEEEEeccHHHHHHH-------HHHHHHHHhhc--cceeeeeecCccHHHHHHHHh----hCCCEEEecchhHHHHhc
Confidence 46899999999987764 33444444432 367888999999888877766 46789999982
Q ss_pred ccccCCCCCCCeEEE
Q 024287 194 AARGIDLPETTHIYN 208 (269)
Q Consensus 194 ~~~Gidi~~~~~Vi~ 208 (269)
-..+.|+.++.+.|.
T Consensus 319 Ns~sf~ldsiEVLvl 333 (691)
T KOG0338|consen 319 NSPSFNLDSIEVLVL 333 (691)
T ss_pred cCCCccccceeEEEe
Confidence 245667777776663
No 227
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=76.64 E-value=8.2 Score=35.88 Aligned_cols=60 Identities=13% Similarity=0.005 Sum_probs=46.5
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI 193 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 193 (269)
.+.++|.++++.-+. ...+.+... +..+..+||+++..++..+++....|..+++++|.-
T Consensus 53 ~g~~lVisPl~sL~~----------dq~~~l~~~---gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe 112 (591)
T TIGR01389 53 KGLTVVISPLISLMK----------DQVDQLRAA---GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPE 112 (591)
T ss_pred CCcEEEEcCCHHHHH----------HHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChh
Confidence 467888888876432 234455554 678899999999999999999999999999988754
No 228
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=76.23 E-value=6.8 Score=36.31 Aligned_cols=72 Identities=10% Similarity=0.039 Sum_probs=45.7
Q ss_pred CceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEec-----ccc
Q 024287 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD-----IAA 195 (269)
Q Consensus 122 ~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~-----~~~ 195 (269)
.++||.+++++-|..+ .+.+.+... .++.+..+||+.+...+...+ .+...|+|+|. .+.
T Consensus 85 ~raLIl~PTreLa~Qi----------~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l----~~~~dIiV~TP~rL~~~l~ 150 (572)
T PRK04537 85 PRALILAPTRELAIQI----------HKDAVKFGADLGLRFALVYGGVDYDKQRELL----QQGVDVIIATPGRLIDYVK 150 (572)
T ss_pred ceEEEEeCcHHHHHHH----------HHHHHHHhccCCceEEEEECCCCHHHHHHHH----hCCCCEEEECHHHHHHHHH
Confidence 5899999999876653 232222211 256788999998876654433 24578999995 222
Q ss_pred c--cCCCCCCCeEE
Q 024287 196 R--GIDLPETTHIY 207 (269)
Q Consensus 196 ~--Gidi~~~~~Vi 207 (269)
. .+++..++++|
T Consensus 151 ~~~~~~l~~v~~lV 164 (572)
T PRK04537 151 QHKVVSLHACEICV 164 (572)
T ss_pred hccccchhheeeeE
Confidence 2 35666666655
No 229
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=75.59 E-value=3.6 Score=32.66 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=29.1
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEec
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASA 59 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SA 59 (269)
...-++|+||++.-++.. ++..+..++..+. ...|+++.|.
T Consensus 157 ~~~p~~ilDEvd~~LD~~-~~~~l~~~l~~~~--~~~Q~ii~Th 197 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQ-NRKRLADLLKELS--KQSQFIITTH 197 (220)
T ss_dssp S--SEEEEESTTTTS-HH-HHHHHHHHHHHHT--TTSEEEEE-S
T ss_pred cccccccccccccccccc-ccccccccccccc--cccccccccc
Confidence 445699999999777666 5677777777764 6799998874
No 230
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=73.62 E-value=4.4 Score=31.57 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=23.9
Q ss_pred cccEEEEeccccccCCchh----hhHHHHHHhhhccCCCccEEEEeccCC
Q 024287 17 SVQVLVIDEVDFLFNSSKQ----VSSLKKLLASYSSCNNRQTVFASASIP 62 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~----~~~i~~i~~~~~~~~~~q~i~~SATl~ 62 (269)
.=.++|+||||..+..... .+.+.+.+...+ ..+..++++|-...
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hR-h~g~diiliTQ~~~ 127 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHR-HYGWDIILITQSPS 127 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCC-CTT-EEEEEES-GG
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhC-cCCcEEEEEeCCHH
Confidence 4469999999988755422 123335554444 34677777776544
No 231
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=73.50 E-value=3.9 Score=38.82 Aligned_cols=40 Identities=33% Similarity=0.319 Sum_probs=29.8
Q ss_pred cEEEEeccccccC--------CchhhhHHHHHHhhhccCCCccEEEEeccC
Q 024287 19 QVLVIDEVDFLFN--------SSKQVSSLKKLLASYSSCNNRQTVFASASI 61 (269)
Q Consensus 19 ~~lViDE~~~l~~--------~~~~~~~i~~i~~~~~~~~~~q~i~~SATl 61 (269)
.++||||||+.-. ..+....+..+.+.+ ++.+++.-|||=
T Consensus 407 GvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~L---P~ARVVYASATG 454 (1300)
T KOG1513|consen 407 GVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKL---PNARVVYASATG 454 (1300)
T ss_pred eeEEehhhhhhcccccccCCCcCcccHhHHHHHHhC---CCceEEEeeccC
Confidence 5899999997542 114456677777776 689999999993
No 232
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=73.47 E-value=5.7 Score=35.32 Aligned_cols=46 Identities=15% Similarity=0.374 Sum_probs=32.4
Q ss_pred ecCcccE-EEEeccccccCCc--hhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 14 KLESVQV-LVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 14 ~l~~~~~-lViDE~~~l~~~~--~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
++.+-++ +.|||||.++++. .....++.+++.++ ++..=+.++|-+
T Consensus 251 D~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIR-SKGVGv~fvTQ~ 299 (502)
T PF05872_consen 251 DLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIR-SKGVGVYFVTQN 299 (502)
T ss_pred CCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhh-ccCceEEEEeCC
Confidence 4555555 5599999877664 45677888888876 456667777765
No 233
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=73.42 E-value=11 Score=34.12 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=49.4
Q ss_pred CceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc------cc
Q 024287 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI------AA 195 (269)
Q Consensus 122 ~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~------~~ 195 (269)
.=.+|.|+|++.|..+ -..++.+.+.| ++.+.+.||+++.-++..-++ ...-++|||+- --
T Consensus 297 Pi~vilvPTrela~Qi-------~~eaKkf~K~y--gl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~Vkm 363 (731)
T KOG0339|consen 297 PIGVILVPTRELASQI-------FSEAKKFGKAY--GLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKM 363 (731)
T ss_pred CeEEEEeccHHHHHHH-------HHHHHHhhhhc--cceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHh
Confidence 3467888999877663 33444454443 678999999999877654444 34569999972 23
Q ss_pred ccCCCCCCCeEE
Q 024287 196 RGIDLPETTHIY 207 (269)
Q Consensus 196 ~Gidi~~~~~Vi 207 (269)
.++|+..+++.+
T Consensus 364 Katn~~rvS~LV 375 (731)
T KOG0339|consen 364 KATNLSRVSYLV 375 (731)
T ss_pred hcccceeeeEEE
Confidence 568888887655
No 234
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=73.11 E-value=4.2 Score=30.74 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=26.4
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
...+++||||+|.|-... ...+.+.++.-+ .+..++++|..
T Consensus 101 ~~~KviiI~~ad~l~~~a--~NaLLK~LEepp--~~~~fiL~t~~ 141 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA--QNALLKTLEEPP--ENTYFILITNN 141 (162)
T ss_dssp SSSEEEEEETGGGS-HHH--HHHHHHHHHSTT--TTEEEEEEES-
T ss_pred CCceEEEeehHhhhhHHH--HHHHHHHhcCCC--CCEEEEEEECC
Confidence 567899999999775433 467777777642 45555555544
No 235
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=72.53 E-value=5.9 Score=30.52 Aligned_cols=53 Identities=9% Similarity=0.221 Sum_probs=34.4
Q ss_pred CcccEEEEeccccccCCc-hhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHH
Q 024287 16 ESVQVLVIDEVDFLFNSS-KQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHN 70 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~-~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~ 70 (269)
..++++|+||+-..++.| -....+.++++.. +...-+|+.+-..|+.+..+++
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~r--p~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKR--PSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhC--CCCCEEEEECCCCCHHHHHhCC
Confidence 456799999998777776 1223444555443 2556777777777777655544
No 236
>PF13173 AAA_14: AAA domain
Probab=72.12 E-value=4.5 Score=29.08 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=24.6
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccC
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl 61 (269)
.-.++++||+|.+.++. ..+..+.... .+.++++.+...
T Consensus 61 ~~~~i~iDEiq~~~~~~---~~lk~l~d~~---~~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWE---DALKFLVDNG---PNIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhccHH---HHHHHHHHhc---cCceEEEEccch
Confidence 45689999999764433 4455555432 456777766543
No 237
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=71.66 E-value=15 Score=32.97 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=45.7
Q ss_pred CceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc------c
Q 024287 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI------A 194 (269)
Q Consensus 122 ~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~------~ 194 (269)
.++||.+++++-|.. +.+.+..... .++.+..++|+.+...+.. .+ .+...|+|||.- .
T Consensus 76 ~~aLil~PtreLa~Q----------i~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l-~~~~~IiV~TP~rL~~~~~ 141 (456)
T PRK10590 76 VRALILTPTRELAAQ----------IGENVRDYSKYLNIRSLVVFGGVSINPQMM---KL-RGGVDVLVATPGRLLDLEH 141 (456)
T ss_pred ceEEEEeCcHHHHHH----------HHHHHHHHhccCCCEEEEEECCcCHHHHHH---HH-cCCCcEEEEChHHHHHHHH
Confidence 369999999987555 3333332211 2456778889987655432 22 356789999962 2
Q ss_pred cccCCCCCCCeEEE
Q 024287 195 ARGIDLPETTHIYN 208 (269)
Q Consensus 195 ~~Gidi~~~~~Vi~ 208 (269)
...+++..++++|.
T Consensus 142 ~~~~~l~~v~~lVi 155 (456)
T PRK10590 142 QNAVKLDQVEILVL 155 (456)
T ss_pred cCCcccccceEEEe
Confidence 34467778877763
No 238
>PRK07413 hypothetical protein; Validated
Probab=71.42 E-value=25 Score=30.68 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=35.1
Q ss_pred CcccEEEEeccccccCCc-hhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHH
Q 024287 16 ESVQVLVIDEVDFLFNSS-KQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCI 72 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~-~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~ 72 (269)
...++||+||+-..++.+ -....+.++++.- +...-+|+.+-..|+.+..+++.+
T Consensus 124 g~ydlvILDEi~~Al~~gll~~eevl~~L~~r--P~~~evVLTGR~ap~~Lie~ADlV 179 (382)
T PRK07413 124 GLYSVVVLDELNPVLDLGLLPVDEVVNTLKSR--PEGLEIIITGRAAPQSLLDIADLH 179 (382)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhC--CCCCEEEEeCCCCCHHHHHhCCee
Confidence 456799999999877777 1123344444432 355677777777787766665543
No 239
>PRK06526 transposase; Provisional
Probab=71.42 E-value=8.6 Score=31.53 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=27.7
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCC
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIP 62 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~ 62 (269)
.+.+.+++||||++.+.........+..++.... .+..+++.|...+
T Consensus 156 ~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~--~~~s~IitSn~~~ 202 (254)
T PRK06526 156 KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRY--ERASLIVTSNKPF 202 (254)
T ss_pred HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHH--hcCCEEEEcCCCH
Confidence 3567899999999955433323345666665432 2345666665543
No 240
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=71.23 E-value=12 Score=29.06 Aligned_cols=55 Identities=11% Similarity=0.300 Sum_probs=35.4
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccC-CCccEEEEeccCCchhhHHHHHHh
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASASIPQHRRFLHNCIQ 73 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~-~~~q~i~~SATl~~~~~~l~~~~~ 73 (269)
.+++||+||..-.+..+ +-.+++++..+... ...-+|+.+-..|+.+-.+++.+.
T Consensus 122 ~ydlviLDEl~~al~~g--~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlVT 177 (198)
T COG2109 122 KYDLVILDELNYALRYG--LLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLVT 177 (198)
T ss_pred CCCEEEEehhhHHHHcC--CCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 46799999999777776 34555555555433 444555555557877766666553
No 241
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=71.21 E-value=4.5 Score=38.43 Aligned_cols=47 Identities=30% Similarity=0.187 Sum_probs=31.5
Q ss_pred CceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 11 HIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 11 ~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
+.+....++++|+||.|++=... ..+...+.++ .-...|++|.|+=+
T Consensus 370 ~~il~~~~glLVcDEGHrlkN~~---s~~~kaL~~l---~t~rRVLLSGTp~Q 416 (776)
T KOG0390|consen 370 RKILLIRPGLLVCDEGHRLKNSD---SLTLKALSSL---KTPRRVLLTGTPIQ 416 (776)
T ss_pred HHHhcCCCCeEEECCCCCccchh---hHHHHHHHhc---CCCceEEeeCCccc
Confidence 44567788999999999763322 3444444444 56778888889643
No 242
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=70.79 E-value=24 Score=33.25 Aligned_cols=69 Identities=13% Similarity=0.035 Sum_probs=45.7
Q ss_pred hcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecccccc
Q 024287 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARG 197 (269)
Q Consensus 118 ~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~G 197 (269)
...+.+++|.++|+.-|... ...+..+... -++.+.++.|++++.+|.... ...|+++|.. +-|
T Consensus 141 al~G~~v~VvTptreLA~qd------ae~~~~l~~~---lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~~-e~~ 204 (656)
T PRK12898 141 ALAGLPVHVITVNDYLAERD------AELMRPLYEA---LGLTVGCVVEDQSPDERRAAY------GADITYCTNK-ELV 204 (656)
T ss_pred hhcCCeEEEEcCcHHHHHHH------HHHHHHHHhh---cCCEEEEEeCCCCHHHHHHHc------CCCEEEECCC-chh
Confidence 34567899999999987663 2222222222 268899999999877665432 3578888884 567
Q ss_pred CCCCC
Q 024287 198 IDLPE 202 (269)
Q Consensus 198 idi~~ 202 (269)
.|.=-
T Consensus 205 FDyLr 209 (656)
T PRK12898 205 FDYLR 209 (656)
T ss_pred hhhcc
Confidence 77533
No 243
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=70.40 E-value=16 Score=32.38 Aligned_cols=75 Identities=12% Similarity=0.085 Sum_probs=46.0
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc-----c-
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI-----A- 194 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~- 194 (269)
+.+++|.+++++-|..+ ......+.+. -++.+..++|+.+....... ++ +...|+|+|.- +
T Consensus 83 ~~~~lil~PtreLa~Qi-------~~~~~~l~~~--~~~~v~~~~gg~~~~~~~~~---l~-~~~~IlV~TP~~l~~~l~ 149 (423)
T PRK04837 83 QPRALIMAPTRELAVQI-------HADAEPLAQA--TGLKLGLAYGGDGYDKQLKV---LE-SGVDILIGTTGRLIDYAK 149 (423)
T ss_pred CceEEEECCcHHHHHHH-------HHHHHHHhcc--CCceEEEEECCCCHHHHHHH---hc-CCCCEEEECHHHHHHHHH
Confidence 35799999999876552 1112222222 25678889998875544332 22 35689999973 2
Q ss_pred cccCCCCCCCeEEE
Q 024287 195 ARGIDLPETTHIYN 208 (269)
Q Consensus 195 ~~Gidi~~~~~Vi~ 208 (269)
...+++..+.++|.
T Consensus 150 ~~~~~l~~v~~lVi 163 (423)
T PRK04837 150 QNHINLGAIQVVVL 163 (423)
T ss_pred cCCcccccccEEEE
Confidence 23466777777763
No 244
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.00 E-value=4.3 Score=36.51 Aligned_cols=38 Identities=34% Similarity=0.447 Sum_probs=22.0
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
..+++||||+|.|-... ...+.+.++. +...++++-||
T Consensus 121 ~~KV~IIDEah~Ls~~A--~NALLKtLEE----Pp~~viFILaT 158 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQS--FNALLKTLEE----PPAHIVFILAT 158 (484)
T ss_pred CCEEEEEechhhcCHHH--HHHHHHHhhc----CCCceEEEeec
Confidence 56799999999664322 3444555543 33455554444
No 245
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=69.14 E-value=20 Score=32.27 Aligned_cols=120 Identities=14% Similarity=0.132 Sum_probs=72.0
Q ss_pred CceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc------c
Q 024287 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI------A 194 (269)
Q Consensus 122 ~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~------~ 194 (269)
+++|+-.+|+--+ ....+++.+... ....+..+.|..++++|...+.. .+|+|+|+- .
T Consensus 59 ~kvlfLAPTKPLV----------~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~ 123 (542)
T COG1111 59 GKVLFLAPTKPLV----------LQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLK 123 (542)
T ss_pred CeEEEecCCchHH----------HHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHh
Confidence 4788889998753 335555555443 23467899999999999888763 578999874 2
Q ss_pred cccCCCCCCCeEEEecCCCCcccc--ccccccCCCCCCCCCCeEEEEe-cCc-hhHHHHHHHHHHhcCc
Q 024287 195 ARGIDLPETTHIYNFDLPRSAIDY--LHRAGRTGRKPFSDEKWTVTSI-ITS-EELFVLQRYENELKFK 259 (269)
Q Consensus 195 ~~Gidi~~~~~Vi~~~~p~~~~~~--~qr~GR~gR~~~~~~~g~~~~~-~~~-~~~~~~~~~~~~~~~~ 259 (269)
+--+|+.++.++|.=.+....-+| +.-+-..-|.. ....++-+ .+| .+.+.+.++++-|+++
T Consensus 124 ~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~---k~~~ilgLTASPGs~~ekI~eV~~nLgIe 189 (542)
T COG1111 124 AGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA---KNPLILGLTASPGSDLEKIQEVVENLGIE 189 (542)
T ss_pred cCccChHHceEEEechhhhccCcchHHHHHHHHHHhc---cCceEEEEecCCCCCHHHHHHHHHhCCcc
Confidence 333888888888754433332222 22222222222 23233333 233 5667777777777654
No 246
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=69.07 E-value=4.6 Score=38.45 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=18.6
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhh
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLAS 45 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~ 45 (269)
...+++||||+|.|.... ...+.+.+++
T Consensus 118 gr~KVIIIDEah~LT~~A--~NALLKtLEE 145 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA--FNAMLKTLEE 145 (830)
T ss_pred CCceEEEEeChhhCCHHH--HHHHHHHHHh
Confidence 356899999999664322 3455566655
No 247
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=68.93 E-value=9.6 Score=34.71 Aligned_cols=56 Identities=7% Similarity=0.079 Sum_probs=41.1
Q ss_pred eEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec
Q 024287 124 GIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD 192 (269)
Q Consensus 124 ~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~ 192 (269)
.+|+++||+-|..+ ....+.+... .++.+..+.|||+...++.+++. ...|+|+|+
T Consensus 266 ~LV~tPTRELa~QV-------~~Hl~ai~~~--t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQV-------KQHLKAIAEK--TQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHH-------HHHHHHhccc--cCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 89999999987763 2222333221 36789999999998887777765 667999998
No 248
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=68.90 E-value=5.9 Score=37.04 Aligned_cols=40 Identities=18% Similarity=0.431 Sum_probs=28.3
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccC
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl 61 (269)
.+++++|+|||+.+- . ..+..++..+. ..+++++++|.|-
T Consensus 351 qtfDLLIVDEAqFIk-~----~al~~ilp~l~-~~n~k~I~ISS~N 390 (738)
T PHA03368 351 QDFNLLFVDEANFIR-P----DAVQTIMGFLN-QTNCKIIFVSSTN 390 (738)
T ss_pred CcccEEEEechhhCC-H----HHHHHHHHHHh-ccCccEEEEecCC
Confidence 368899999999543 2 34455555554 3589999999884
No 249
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=68.71 E-value=30 Score=31.15 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=46.5
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc-----
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA----- 194 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~----- 194 (269)
..++||.+++++-|.. +.+.+..... .+..+..++|+.+.... .+.+..+...|+|+|.--
T Consensus 162 ~~~aLil~PtreLa~Q----------~~~~~~~l~~~~~~~v~~~~gg~~~~~~---~~~~~~~~~~Iiv~TP~~Ll~~~ 228 (475)
T PRK01297 162 EPRALIIAPTRELVVQ----------IAKDAAALTKYTGLNVMTFVGGMDFDKQ---LKQLEARFCDILVATPGRLLDFN 228 (475)
T ss_pred CceEEEEeCcHHHHHH----------HHHHHHHhhccCCCEEEEEEccCChHHH---HHHHhCCCCCEEEECHHHHHHHH
Confidence 3579999999987655 2333322211 24678889998765443 344556678899999731
Q ss_pred -cccCCCCCCCeEE
Q 024287 195 -ARGIDLPETTHIY 207 (269)
Q Consensus 195 -~~Gidi~~~~~Vi 207 (269)
...+.+.++++||
T Consensus 229 ~~~~~~l~~l~~lV 242 (475)
T PRK01297 229 QRGEVHLDMVEVMV 242 (475)
T ss_pred HcCCcccccCceEE
Confidence 2245566777666
No 250
>PRK04296 thymidine kinase; Provisional
Probab=68.53 E-value=10 Score=29.52 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=16.6
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhh
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASY 46 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~ 46 (269)
.+.++||+||+|. ++. ..+.++++.+
T Consensus 77 ~~~dvviIDEaq~-l~~----~~v~~l~~~l 102 (190)
T PRK04296 77 EKIDCVLIDEAQF-LDK----EQVVQLAEVL 102 (190)
T ss_pred CCCCEEEEEcccc-CCH----HHHHHHHHHH
Confidence 4678999999984 322 2344555554
No 251
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=68.48 E-value=3.8 Score=37.15 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=23.1
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
-.+.++.||||+| |+..+.+ ..+.+-+++ ++.-++++=||
T Consensus 117 ~~ryKVyiIDEvH-MLS~~af-NALLKTLEE----PP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVH-MLSKQAF-NALLKTLEE----PPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHH-hhhHHHH-HHHhccccc----CccCeEEEEec
Confidence 4567899999999 4444422 344444443 44445554455
No 252
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=68.35 E-value=2.2 Score=41.16 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=26.2
Q ss_pred Cchh-hHHHHhC-ceec-----CcccEEEEeccccccCCc
Q 024287 1 MGSL-CQLIEKH-IFKL-----ESVQVLVIDEVDFLFNSS 33 (269)
Q Consensus 1 pgrl-~~~l~~~-~~~l-----~~~~~lViDE~~~l~~~~ 33 (269)
||++ .|.|+.+ .+.. +.+.++||||+|.++-+.
T Consensus 179 ~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDE 218 (908)
T PRK13107 179 NNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDE 218 (908)
T ss_pred CCcccchhhhccCccchhhhhccccceeeecchhhhcccc
Confidence 6788 8888887 4454 788999999999887554
No 253
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=68.34 E-value=6.2 Score=38.64 Aligned_cols=72 Identities=22% Similarity=0.220 Sum_probs=54.6
Q ss_pred CccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCe--------EEEEecCchhHHHHHHHHHH
Q 024287 184 GGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKW--------TVTSIITSEELFVLQRYENE 255 (269)
Q Consensus 184 ~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~ 255 (269)
..+.+++-+++.+|-|-|++-.++.+.-..+...-.|.+||.-|...+ ..| ....++++....+...|.+.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vn-q~G~R~~~~~~~LTvianesy~dFa~~LQ~E 579 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVD-ENGHRVSQEEFRLNYLIDYDEKDFASKLVGE 579 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceecccc-ccCccccCccEEEEEEeCccHHHHHHHHHHH
Confidence 478999999999999999999999998888888889999999988653 222 23345555555555555554
Q ss_pred h
Q 024287 256 L 256 (269)
Q Consensus 256 ~ 256 (269)
.
T Consensus 580 I 580 (986)
T PRK15483 580 I 580 (986)
T ss_pred H
Confidence 4
No 254
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=68.21 E-value=8.2 Score=30.62 Aligned_cols=46 Identities=13% Similarity=0.251 Sum_probs=25.7
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCC
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIP 62 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~ 62 (269)
+...+++||||+|.+.........+..++..... .+.. +++|++.+
T Consensus 88 ~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~-~~~~-iIits~~~ 133 (226)
T TIGR03420 88 LEQADLVCLDDVEAIAGQPEWQEALFHLYNRVRE-AGGR-LLIAGRAA 133 (226)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH-cCCe-EEEECCCC
Confidence 3455799999999764432123556666655431 2334 44555543
No 255
>PRK14974 cell division protein FtsY; Provisional
Probab=67.61 E-value=24 Score=30.26 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=34.5
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhh
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRR 66 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~ 66 (269)
.+.++|+||.+.++-.....+..+..+.+... +..-++.++||..+...
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~--pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTK--PDLVIFVGDALAGNDAV 269 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhC--CceEEEeeccccchhHH
Confidence 45679999999977655555667777765543 55667778998876533
No 256
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.50 E-value=7.8 Score=36.33 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=23.4
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
...+++||||+|.|.... ...+.+.+++- +.+..+|+.|
T Consensus 123 gr~KViIIDEah~Ls~~A--aNALLKTLEEP--P~~v~FILaT 161 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHA--FNAMLKTLEEP--PEHVKFILAT 161 (700)
T ss_pred CCceEEEEEChHhcCHHH--HHHHHHhhccC--CCCceEEEEe
Confidence 456799999999764333 24455555542 2445555555
No 257
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=67.11 E-value=5.6 Score=37.98 Aligned_cols=71 Identities=21% Similarity=0.191 Sum_probs=53.6
Q ss_pred CccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEE-----------EEecCchhHHHHHHH
Q 024287 184 GGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV-----------TSIITSEELFVLQRY 252 (269)
Q Consensus 184 ~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~-----------~~~~~~~~~~~~~~~ 252 (269)
..+.+++-.++-+|-|-|+|=.++-.....|..+=.|.+||.-|--.. ..|.- ..++...+..+...+
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVN-e~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVN-ENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeec-cccceecccccccceEEEEecccHHHHHHHH
Confidence 478999999999999999999999998888999999999999887543 44432 234555555555554
Q ss_pred HHH
Q 024287 253 ENE 255 (269)
Q Consensus 253 ~~~ 255 (269)
.+.
T Consensus 562 qkE 564 (985)
T COG3587 562 QKE 564 (985)
T ss_pred HHH
Confidence 443
No 258
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=66.22 E-value=6.3 Score=34.41 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=25.3
Q ss_pred EEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCch
Q 024287 20 VLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQH 64 (269)
Q Consensus 20 ~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~ 64 (269)
++.+||+|++-... + . .++..+ .+..++++.||-.++
T Consensus 107 iLflDEIHRfnK~Q-Q-D---~lLp~v---E~G~iilIGATTENP 143 (436)
T COG2256 107 ILFLDEIHRFNKAQ-Q-D---ALLPHV---ENGTIILIGATTENP 143 (436)
T ss_pred EEEEehhhhcChhh-h-h---hhhhhh---cCCeEEEEeccCCCC
Confidence 78999999864433 2 2 333333 678899999996555
No 259
>PF12846 AAA_10: AAA-like domain
Probab=65.76 E-value=5.7 Score=32.90 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=26.8
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
.-.++++||+|.++........+.++++..+ +..+.++-||
T Consensus 220 ~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~R---k~g~~~~l~t 260 (304)
T PF12846_consen 220 RPKIIVIDEAHNFLSNPSGAEFLDELLREGR---KYGVGLILAT 260 (304)
T ss_pred ceEEEEeCCccccccccchhhhhhHHHHHHH---hcCCEEEEee
Confidence 3457899999999887545566777777654 3334444444
No 260
>PRK06620 hypothetical protein; Validated
Probab=64.86 E-value=11 Score=29.99 Aligned_cols=43 Identities=9% Similarity=0.254 Sum_probs=24.4
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCch
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQH 64 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~ 64 (269)
.+.+++++||+|.+ . ...+..+++.+. ..+.++++.|.|.|+.
T Consensus 84 ~~~d~lliDdi~~~---~--~~~lf~l~N~~~-e~g~~ilits~~~p~~ 126 (214)
T PRK06620 84 EKYNAFIIEDIENW---Q--EPALLHIFNIIN-EKQKYLLLTSSDKSRN 126 (214)
T ss_pred hcCCEEEEeccccc---h--HHHHHHHHHHHH-hcCCEEEEEcCCCccc
Confidence 35579999999953 1 134455555543 2344555555555553
No 261
>PRK07952 DNA replication protein DnaC; Validated
Probab=64.56 E-value=11 Score=30.80 Aligned_cols=47 Identities=26% Similarity=0.300 Sum_probs=30.6
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCC
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIP 62 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~ 62 (269)
+.++++|||||++...........+..++..-. ....++++.|---+
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry-~~~~~tiitSNl~~ 206 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRS-SSKRPTGMLTNSNM 206 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHH-hCCCCEEEeCCCCH
Confidence 678999999999965544334446667776532 34567777765433
No 262
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=64.49 E-value=20 Score=29.51 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=67.7
Q ss_pred cEEEEeccCCchhhHHHH--HHhhhcccCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhh---cCCCceEEE
Q 024287 53 QTVFASASIPQHRRFLHN--CIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQS---DAPESGIIF 127 (269)
Q Consensus 53 q~i~~SATl~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~---~~~~~~lIF 127 (269)
.+-+++.|.++....+.. .+..++... .+.|..++-+.....+...+-+.. .+.-++||+
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~---------------~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIVv 68 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV---------------MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIVV 68 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH---------------EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEEE
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc---------------eEEEEeCCCcccchHHHHHHHHHHhccCCCccEEEE
Confidence 467788898887665442 222333211 355666655544334443333332 234589999
Q ss_pred eeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCC------
Q 024287 128 VGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLP------ 201 (269)
Q Consensus 128 ~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~------ 201 (269)
++.... +....+.+++.- -.+.++-|.....- .++.. ...+.+.++...+|..++
T Consensus 69 ~q~vpG----------t~~af~kIkekR---pDIl~ia~~~~EDp--~~i~~----~aDi~~~~D~~~~G~~i~~~Ak~m 129 (275)
T PF12683_consen 69 SQAVPG----------TAEAFRKIKEKR---PDILLIAGEPHEDP--EVISS----AADIVVNPDEISRGYTIVWAAKKM 129 (275)
T ss_dssp E-SS-------------HHHHHHHHHH----TTSEEEESS--S-H--HHHHH----HSSEEEE--HHHHHHHHHHHHHHT
T ss_pred eCCCcc----------hHHHHHHHHhcC---CCeEEEcCCCcCCH--HHHhh----ccCeEeccchhhccHHHHHHHHHc
Confidence 998775 333555566552 34666766654322 22332 457889999999998876
Q ss_pred CCCeEEEecCCCCcc
Q 024287 202 ETTHIYNFDLPRSAI 216 (269)
Q Consensus 202 ~~~~Vi~~~~p~~~~ 216 (269)
+++..+|+.+|++.+
T Consensus 130 GAktFVh~sfprhms 144 (275)
T PF12683_consen 130 GAKTFVHYSFPRHMS 144 (275)
T ss_dssp T-S-EEEEEETTGGG
T ss_pred CCceEEEEechhhcc
Confidence 568899999998776
No 263
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=64.38 E-value=23 Score=33.15 Aligned_cols=59 Identities=15% Similarity=0.040 Sum_probs=45.6
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD 192 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~ 192 (269)
.+.+||.+++++-+.. ..+.+... +..+..++|..+..++..+++....|..+++++|+
T Consensus 65 ~g~tlVisPl~sL~~d----------qv~~l~~~---gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKD----------QVDQLLAN---GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHH----------HHHHHHHc---CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 4679999998764322 34445544 67788999999999988899999999999998884
No 264
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=64.07 E-value=7.7 Score=29.73 Aligned_cols=53 Identities=11% Similarity=0.231 Sum_probs=29.7
Q ss_pred CcccEEEEeccccccCCc-hhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHH
Q 024287 16 ESVQVLVIDEVDFLFNSS-KQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHN 70 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~-~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~ 70 (269)
...++||+||+-..+..+ -....+.++++.- +...-+|+.+-..|+.+...++
T Consensus 95 ~~~dlvILDEi~~a~~~gll~~~~v~~~l~~r--p~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 95 GEYDLVILDEINYAVDYGLLSEEEVLDLLENR--PESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS---TT-EEEEE-SS--HHHHHH-S
T ss_pred CCCCEEEEcchHHHhHCCCccHHHHHHHHHcC--CCCeEEEEECCCCCHHHHHhCC
Confidence 456799999998777666 1223444555432 3667777777778877665544
No 265
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=63.90 E-value=5.5 Score=31.56 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=23.7
Q ss_pred CchhhHHHHhCceecCcccEEEEec
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDE 25 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE 25 (269)
|||+..++..+.+.++.+.++|+|=
T Consensus 204 p~Ri~~lv~~~~f~~~~lk~iIlD~ 228 (271)
T KOG3089|consen 204 PGRIKELVKQGGFNLSPLKFIILDW 228 (271)
T ss_pred cHHHHHHHHhcCCCCCcceeEEeec
Confidence 8999999999999999999999984
No 266
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=63.76 E-value=57 Score=25.10 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=44.4
Q ss_pred HHHHHHHhhc-CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEE
Q 024287 110 QTLLSLIQSD-APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLL 188 (269)
Q Consensus 110 ~~l~~ll~~~-~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iL 188 (269)
+.+..+++.. ..+..+.|+-+... .++...+.|++.|++ +.+...||..++.+..++.+..+....+++
T Consensus 35 dl~~~l~~~~~~~~~~vfllG~~~~---------v~~~~~~~l~~~yP~-l~i~g~~g~f~~~~~~~i~~~I~~s~~dil 104 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPIFLYGGKPD---------VLQQLKVKLIKEYPK-LKIVGAFGPLEPEERKAALAKIARSGAGIV 104 (177)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHH---------HHHHHHHHHHHHCCC-CEEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 4444555433 23344555555443 145577888888864 565556999988888888888887666655
Q ss_pred E
Q 024287 189 V 189 (269)
Q Consensus 189 v 189 (269)
+
T Consensus 105 ~ 105 (177)
T TIGR00696 105 F 105 (177)
T ss_pred E
Confidence 4
No 267
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=63.32 E-value=13 Score=29.31 Aligned_cols=41 Identities=37% Similarity=0.450 Sum_probs=22.5
Q ss_pred cEEEEecccccc-CC---chhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 19 QVLVIDEVDFLF-NS---SKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 19 ~~lViDE~~~l~-~~---~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
-++||||+|.+. .. ......+..++.......+..++ ++++
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v-~~~S 164 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIV-ITGS 164 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEE-EEES
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEE-EECC
Confidence 589999999887 22 23445566666554323344444 4444
No 268
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=63.14 E-value=16 Score=28.62 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=20.5
Q ss_pred ccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEE
Q 024287 18 VQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFA 57 (269)
Q Consensus 18 ~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~ 57 (269)
+++|.||||+ .++.. ....+.++... .+.++++.
T Consensus 83 ~~~v~IDEaQ-F~~~~-~v~~l~~lad~----lgi~Vi~~ 116 (201)
T COG1435 83 VDCVLIDEAQ-FFDEE-LVYVLNELADR----LGIPVICY 116 (201)
T ss_pred cCEEEEehhH-hCCHH-HHHHHHHHHhh----cCCEEEEe
Confidence 8899999999 44433 33445555443 34555543
No 269
>PRK08181 transposase; Validated
Probab=62.99 E-value=10 Score=31.34 Aligned_cols=45 Identities=18% Similarity=0.426 Sum_probs=28.7
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
.+.+.+++|+||++...........+..+++... .+.++++.|-.
T Consensus 164 ~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~--~~~s~IiTSN~ 208 (269)
T PRK08181 164 KLDKFDLLILDDLAYVTKDQAETSVLFELISARY--ERRSILITANQ 208 (269)
T ss_pred HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHH--hCCCEEEEcCC
Confidence 3577899999999965444444456777777543 23455555543
No 270
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=62.35 E-value=31 Score=30.12 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=54.2
Q ss_pred HHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEE
Q 024287 109 YQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLL 188 (269)
Q Consensus 109 ~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iL 188 (269)
+..+..++++-+...++|.+++|+-|..+ .+..+.|-.. -++.+..+-|||..... ....++ +..||
T Consensus 117 LPIl~~LL~~p~~~~~lVLtPtRELA~QI-------~e~fe~Lg~~--iglr~~~lvGG~~m~~q--~~~L~k--kPhil 183 (476)
T KOG0330|consen 117 LPILQRLLQEPKLFFALVLTPTRELAQQI-------AEQFEALGSG--IGLRVAVLVGGMDMMLQ--ANQLSK--KPHIL 183 (476)
T ss_pred HHHHHHHHcCCCCceEEEecCcHHHHHHH-------HHHHHHhccc--cCeEEEEEecCchHHHH--HHHhhc--CCCEE
Confidence 45666777766677899999999976652 2333444211 36678899999985543 233333 56689
Q ss_pred EEecc-----c--cccCCCCCCCeEE
Q 024287 189 VSTDI-----A--ARGIDLPETTHIY 207 (269)
Q Consensus 189 v~T~~-----~--~~Gidi~~~~~Vi 207 (269)
|||.= + ..|..+..+.+.|
T Consensus 184 VaTPGrL~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 184 VATPGRLWDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred EeCcHHHHHHHHhccCccHHHhHHHh
Confidence 99973 2 3566655555443
No 271
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=62.28 E-value=35 Score=30.64 Aligned_cols=74 Identities=9% Similarity=0.087 Sum_probs=49.1
Q ss_pred ceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc-----cc--
Q 024287 123 SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI-----AA-- 195 (269)
Q Consensus 123 ~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~~-- 195 (269)
..+|..+|++-|... ..+...+-+.+ .++++..+-|+++..+ -++.|++....|||+|+- +.
T Consensus 81 galIIsPTRELa~QI-------~~V~~~F~~~l-~~l~~~l~vGG~~v~~---Di~~fkee~~nIlVgTPGRL~di~~~~ 149 (567)
T KOG0345|consen 81 GALIISPTRELARQI-------REVAQPFLEHL-PNLNCELLVGGRSVEE---DIKTFKEEGPNILVGTPGRLLDILQRE 149 (567)
T ss_pred eEEEecCcHHHHHHH-------HHHHHHHHHhh-hccceEEEecCccHHH---HHHHHHHhCCcEEEeCchhHHHHHhch
Confidence 579999999976552 22333322222 3578889999966544 467888888999999972 32
Q ss_pred -ccCCCCCCCeEE
Q 024287 196 -RGIDLPETTHIY 207 (269)
Q Consensus 196 -~Gidi~~~~~Vi 207 (269)
.++++.+..++|
T Consensus 150 ~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 150 AEKLSFRSLEILV 162 (567)
T ss_pred hhhccccccceEE
Confidence 346655777666
No 272
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=61.96 E-value=0.94 Score=42.44 Aligned_cols=122 Identities=19% Similarity=0.129 Sum_probs=84.4
Q ss_pred cchHHHHHHHHhhcC--C-CceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhc
Q 024287 106 KMKYQTLLSLIQSDA--P-ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQ 182 (269)
Q Consensus 106 ~~k~~~l~~ll~~~~--~-~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~ 182 (269)
..++..+..+|...+ . ++++||+.-..- ...+...+.. .+.....+-|.|+...|...+..|..
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~----------l~l~~~~l~~---~~~~~~~~~g~~~~~~r~~s~~~~~~ 587 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWG----------LALVCLRLFF---KGFVFLRYDGEMLMKIRTKSFTDFPC 587 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHH----------HHHhhhhhhh---cccccchhhhhhHHHHHHhhhccccc
Confidence 345555666654321 2 489999976543 1223333332 25667778899999999999999985
Q ss_pred CC-cc-EEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEec
Q 024287 183 GG-GY-LLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241 (269)
Q Consensus 183 ~~-~~-iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~ 241 (269)
+. .+ .+++..+...|+|+-.+.+|+..|+-+++..--|-+-|+-|-|+. +.-.++-|.
T Consensus 588 ~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~-k~v~v~r~~ 647 (674)
T KOG1001|consen 588 DPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQT-KPVKVSRFI 647 (674)
T ss_pred CccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhccc-ceeeeeeeh
Confidence 43 44 456777889999999999999999888888888888888888754 333343343
No 273
>PLN03025 replication factor C subunit; Provisional
Probab=61.56 E-value=11 Score=31.96 Aligned_cols=40 Identities=18% Similarity=0.414 Sum_probs=23.9
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
...+++|+||+|.|.... ...+.+.++..+ ....+++ +++
T Consensus 98 ~~~kviiiDE~d~lt~~a--q~aL~~~lE~~~--~~t~~il-~~n 137 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA--QQALRRTMEIYS--NTTRFAL-ACN 137 (319)
T ss_pred CCeEEEEEechhhcCHHH--HHHHHHHHhccc--CCceEEE-EeC
Confidence 357899999999775433 255566665432 3344444 444
No 274
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.03 E-value=8 Score=35.26 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=23.0
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
.+.+++||||+|.|.... ...+.+.++..+ ....+++.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a--~naLLk~LEepp--~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS--FNALLKTLEEPP--SHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH--HHHHHHHHhccC--CCeEEEEEE
Confidence 356799999999664333 245555665532 344444443
No 275
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=61.02 E-value=9.7 Score=33.03 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=21.5
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
.++.|||+| |++.. ...-+.+.++. .-.+++.|.
T Consensus 280 GVLFIDEvH-mLDiE-cFsfLnralEs----~~sPiiIlA 313 (398)
T PF06068_consen 280 GVLFIDEVH-MLDIE-CFSFLNRALES----ELSPIIILA 313 (398)
T ss_dssp -EEEEESGG-GSBHH-HHHHHHHHHTS----TT--EEEEE
T ss_pred ceEEecchh-hccHH-HHHHHHHHhcC----CCCcEEEEe
Confidence 589999999 77766 33555565553 556777765
No 276
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=60.81 E-value=7.4 Score=37.69 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=23.7
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
+..+++||||+|.|-... ...+.++++..+ ....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a--~NaLLK~LEEpP--~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG--FNALLKIVEEPP--EHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH--HHHHHHHHhCCC--CCeEEEEEe
Confidence 567899999999765433 345666665532 344444443
No 277
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=60.79 E-value=8.6 Score=37.70 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=26.4
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhc-----cCCCccEEEEeccCCc
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS-----SCNNRQTVFASASIPQ 63 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~-----~~~~~q~i~~SATl~~ 63 (269)
.+.+++.+|+||.|.+- .+ ..+.++.+..... .....+.+.+|.-+.+
T Consensus 1043 ~v~~v~~iv~de~hllg-~~-rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~n 1095 (1230)
T KOG0952|consen 1043 YVQSVSLIVLDEIHLLG-ED-RGPVLEVIVSRMNYISSQTEEPVRYLGLSTALAN 1095 (1230)
T ss_pred hhccccceeeccccccc-CC-CcceEEEEeeccccCccccCcchhhhhHhhhhhc
Confidence 56789999999999554 33 1233222221111 1345666777644443
No 278
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=60.29 E-value=27 Score=33.53 Aligned_cols=58 Identities=3% Similarity=0.031 Sum_probs=38.5
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD 192 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~ 192 (269)
...++|+.++++.-|.. ....+.+....++.+..++|+.+..+|..+ +. ...|+|+|.
T Consensus 80 ~~~~aL~l~PtraLa~q----------~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~~-~~~IivtTP 137 (742)
T TIGR03817 80 PRATALYLAPTKALAAD----------QLRAVRELTLRGVRPATYDGDTPTEERRWA----RE-HARYVLTNP 137 (742)
T ss_pred CCcEEEEEcChHHHHHH----------HHHHHHHhccCCeEEEEEeCCCCHHHHHHH----hc-CCCEEEECh
Confidence 44689999999986555 333333322235678889999987776433 22 367999996
No 279
>PRK12377 putative replication protein; Provisional
Probab=59.46 E-value=16 Score=29.93 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=28.9
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEec
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASA 59 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SA 59 (269)
.+.++++||+||++..-........+..+++.-. ....++++.|-
T Consensus 160 ~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~-~~~~ptiitSN 204 (248)
T PRK12377 160 ELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRT-ASMRSVGMLTN 204 (248)
T ss_pred HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHH-hcCCCEEEEcC
Confidence 4678999999999744333334456666766542 24567777664
No 280
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=59.19 E-value=6.9 Score=36.61 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=14.8
Q ss_pred ecCcccEEEEeccccccC
Q 024287 14 KLESVQVLVIDEVDFLFN 31 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~ 31 (269)
-+...+++||||||.+.+
T Consensus 203 iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 203 LLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred CCCCCCEEEEeCCcchHH
Confidence 456789999999998863
No 281
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=58.91 E-value=70 Score=24.33 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=33.5
Q ss_pred hHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEE
Q 024287 144 TTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVS 190 (269)
Q Consensus 144 ~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~ 190 (269)
.....+.+++.+++---+..+|+.+...+...+++..+....++++.
T Consensus 59 ~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~v 105 (171)
T cd06533 59 LEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFV 105 (171)
T ss_pred HHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 44467788888875333455889998888778888888777666543
No 282
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=58.81 E-value=36 Score=30.23 Aligned_cols=83 Identities=14% Similarity=0.170 Sum_probs=46.9
Q ss_pred cCcccEEEEeccccccCCc-------hhhhHHHHHHhhhc--cCCCccEEEEecc-CCchhhHHHHHHhhhcccCceeEE
Q 024287 15 LESVQVLVIDEVDFLFNSS-------KQVSSLKKLLASYS--SCNNRQTVFASAS-IPQHRRFLHNCIQQKWTKSDVVHV 84 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~-------~~~~~i~~i~~~~~--~~~~~q~i~~SAT-l~~~~~~l~~~~~~~~~~~~~~~~ 84 (269)
..+..+++|||+|.++..- ..+...+.+++... ...+-++++++|| +|.++... +...+
T Consensus 243 ~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea---~~Rrf-------- 311 (428)
T KOG0740|consen 243 SLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEA---ARRRF-------- 311 (428)
T ss_pred hcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHH---HHHHh--------
Confidence 4456788999999887331 22233444444332 2355689999999 45544322 21111
Q ss_pred eecCcccCCCcceeEEEEec-CcchHHHHHHHHhhc
Q 024287 85 HVNAIKPLPSCLHHRFVICG-KKMKYQTLLSLIQSD 119 (269)
Q Consensus 85 ~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~ 119 (269)
....|+..+ .+.+...+..++...
T Consensus 312 -----------~kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 312 -----------VKRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred -----------hceeeecCCCHHHHHHHHHHHHHhC
Confidence 222333333 356788888888765
No 283
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=58.78 E-value=90 Score=25.61 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=48.2
Q ss_pred hHHHHHHHHhhcC-CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCcc
Q 024287 108 KYQTLLSLIQSDA-PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGY 186 (269)
Q Consensus 108 k~~~l~~ll~~~~-~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~ 186 (269)
-.+....+++... ++..+-|.-.+..+ +......++..++.-.-++.+||-.++.+.+.+.++.......
T Consensus 93 G~Dl~~~Ll~~a~~~~~~vfllGgkp~V---------~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pd 163 (253)
T COG1922 93 GTDLVEALLKRAAEEGKRVFLLGGKPGV---------AEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPD 163 (253)
T ss_pred hHHHHHHHHHHhCccCceEEEecCCHHH---------HHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCC
Confidence 3445555555432 34556666555432 4456777888887544466666999998888999999887776
Q ss_pred EEEE
Q 024287 187 LLVS 190 (269)
Q Consensus 187 iLv~ 190 (269)
+|..
T Consensus 164 il~V 167 (253)
T COG1922 164 ILLV 167 (253)
T ss_pred EEEE
Confidence 6543
No 284
>PTZ00110 helicase; Provisional
Probab=58.58 E-value=27 Score=32.18 Aligned_cols=73 Identities=7% Similarity=0.032 Sum_probs=44.3
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEec-----cc
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD-----IA 194 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~-----~~ 194 (269)
+..+||.+++++-|.. +.+.+.+... .++.+...+|+.+...... .++. ...|+|+|. .+
T Consensus 203 gp~~LIL~PTreLa~Q----------i~~~~~~~~~~~~i~~~~~~gg~~~~~q~~---~l~~-~~~IlVaTPgrL~d~l 268 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQ----------IREQCNKFGASSKIRNTVAYGGVPKRGQIY---ALRR-GVEILIACPGRLIDFL 268 (545)
T ss_pred CcEEEEECChHHHHHH----------HHHHHHHHhcccCccEEEEeCCCCHHHHHH---HHHc-CCCEEEECHHHHHHHH
Confidence 3568999999987655 2333322211 2456778888887655432 2333 467999996 34
Q ss_pred ccc-CCCCCCCeEE
Q 024287 195 ARG-IDLPETTHIY 207 (269)
Q Consensus 195 ~~G-idi~~~~~Vi 207 (269)
..+ .++..++++|
T Consensus 269 ~~~~~~l~~v~~lV 282 (545)
T PTZ00110 269 ESNVTNLRRVTYLV 282 (545)
T ss_pred HcCCCChhhCcEEE
Confidence 333 5667777766
No 285
>PRK13766 Hef nuclease; Provisional
Probab=57.97 E-value=71 Score=30.85 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=48.6
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc----
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA---- 194 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~---- 194 (269)
.++++||.++++..+.. ..+.+.+.+. .+..+..++|+.+..+|.+.+. ...|+|+|.-.
T Consensus 57 ~~~~vLvl~Pt~~L~~Q----------~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~ 121 (773)
T PRK13766 57 KGGKVLILAPTKPLVEQ----------HAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIEND 121 (773)
T ss_pred CCCeEEEEeCcHHHHHH----------HHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHH
Confidence 45789999999775433 3344444332 1346888999999888765553 34688998732
Q ss_pred --cccCCCCCCCeEEEec
Q 024287 195 --ARGIDLPETTHIYNFD 210 (269)
Q Consensus 195 --~~Gidi~~~~~Vi~~~ 210 (269)
..-+++..+++||.-.
T Consensus 122 l~~~~~~~~~~~liVvDE 139 (773)
T PRK13766 122 LIAGRISLEDVSLLIFDE 139 (773)
T ss_pred HHcCCCChhhCcEEEEEC
Confidence 2335566777777443
No 286
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=57.96 E-value=37 Score=34.20 Aligned_cols=60 Identities=17% Similarity=0.070 Sum_probs=44.2
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhc--CCccEEEEecc
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQ--GGGYLLVSTDI 193 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~--~~~~iLv~T~~ 193 (269)
++.+||.+++++-+.. ....|.. .++.+..+.|+++..++.+++..+.. |..++|++|+-
T Consensus 500 ~GiTLVISPLiSLmqD----------QV~~L~~---~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPE 561 (1195)
T PLN03137 500 PGITLVISPLVSLIQD----------QIMNLLQ---ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPE 561 (1195)
T ss_pred CCcEEEEeCHHHHHHH----------HHHHHHh---CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChH
Confidence 4578888888764321 2222332 36888999999999999899988877 88999999973
No 287
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=57.94 E-value=9.9 Score=35.67 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=18.5
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhh
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLAS 45 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~ 45 (269)
...+++||||+|+|.... ...+.+.++.
T Consensus 118 g~~KV~IIDEah~Ls~~a--~NALLKtLEE 145 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS--FNALLKTLEE 145 (647)
T ss_pred CCCEEEEEechHhCCHHH--HHHHHHHHHc
Confidence 456799999999664333 3455555654
No 288
>PRK08116 hypothetical protein; Validated
Probab=57.85 E-value=17 Score=30.13 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=29.5
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCch
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQH 64 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~ 64 (269)
+.+.++|||||++.--...+....+..++.... ....++|+.|..-|..
T Consensus 176 l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~-~~~~~~IiTsN~~~~e 224 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEWAREKVYNIIDSRY-RKGLPTIVTTNLSLEE 224 (268)
T ss_pred hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHH-HCCCCEEEECCCCHHH
Confidence 678899999999743222333456667776542 2445666666544433
No 289
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=57.80 E-value=25 Score=34.66 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=23.9
Q ss_pred EEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 20 VLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 20 ~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
+||+||.|++-..+..+ ..+ ..+ .+.-++.+|||.+.
T Consensus 204 ivIiDEPh~~~~~~k~~---~~i-~~l---npl~~lrysAT~~~ 240 (986)
T PRK15483 204 VVIIDEPHRFPRDNKFY---QAI-EAL---KPQMIIRFGATFPD 240 (986)
T ss_pred EEEEECCCCCCcchHHH---HHH-Hhc---CcccEEEEeeecCC
Confidence 89999999875544333 344 232 23335669999987
No 290
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=57.47 E-value=74 Score=24.22 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=34.5
Q ss_pred hHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEE
Q 024287 144 TTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVS 190 (269)
Q Consensus 144 ~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~ 190 (269)
+....+.|++.|++---+..+||.+++.+..++++..+....++++.
T Consensus 61 ~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~v 107 (172)
T PF03808_consen 61 LEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFV 107 (172)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 45577888888875333456778788888889999998877666543
No 291
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=57.13 E-value=18 Score=28.82 Aligned_cols=45 Identities=13% Similarity=0.255 Sum_probs=27.0
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
...+++|+||+|.+-.. ....+..+++... .....+++++++.++
T Consensus 89 ~~~~~liiDdi~~l~~~--~~~~L~~~~~~~~-~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 89 PEAELYAVDDVERLDDA--QQIALFNLFNRVR-AHGQGALLVAGPAAP 133 (227)
T ss_pred ccCCEEEEeChhhcCch--HHHHHHHHHHHHH-HcCCcEEEEeCCCCH
Confidence 35679999999976432 2355556665543 123345677777554
No 292
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=56.84 E-value=5.8 Score=33.22 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=11.6
Q ss_pred cccEEEEecccccc
Q 024287 17 SVQVLVIDEVDFLF 30 (269)
Q Consensus 17 ~~~~lViDE~~~l~ 30 (269)
.-.++||||||.+.
T Consensus 236 ~~~~lIiDEAHnL~ 249 (289)
T smart00489 236 KDSIVIFDEAHNLD 249 (289)
T ss_pred cccEEEEeCccChH
Confidence 36799999999764
No 293
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=56.84 E-value=5.8 Score=33.22 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=11.6
Q ss_pred cccEEEEecccccc
Q 024287 17 SVQVLVIDEVDFLF 30 (269)
Q Consensus 17 ~~~~lViDE~~~l~ 30 (269)
.-.++||||||.+.
T Consensus 236 ~~~~lIiDEAHnL~ 249 (289)
T smart00488 236 KDSIVIFDEAHNLD 249 (289)
T ss_pred cccEEEEeCccChH
Confidence 36799999999764
No 294
>PHA00350 putative assembly protein
Probab=56.78 E-value=22 Score=31.23 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=27.6
Q ss_pred cEEEEeccccccCCchh---------------------hhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 19 QVLVIDEVDFLFNSSKQ---------------------VSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~---------------------~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
.++||||||.++..... .+...+.+...+ ..+.-++++|-.+..
T Consensus 83 aLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HR-H~G~DIiliTQ~~~~ 147 (399)
T PHA00350 83 ALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHR-HYNWDIILLTPNIRK 147 (399)
T ss_pred CEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhc-ccCceEEEEeCCHHH
Confidence 49999999988754211 233444444333 357889999866543
No 295
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=56.42 E-value=17 Score=33.78 Aligned_cols=42 Identities=19% Similarity=0.449 Sum_probs=29.7
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccC
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl 61 (269)
+=.+.+++++||||.+ .. ..+..++..+. ..+..+|+.|.|-
T Consensus 296 RGQ~fnll~VDEA~FI-~~----~a~~tilgfm~-q~~~KiIfISS~N 337 (668)
T PHA03372 296 RGQNFHLLLVDEAHFI-KK----DAFNTILGFLA-QNTTKIIFISSTN 337 (668)
T ss_pred cCCCCCEEEEehhhcc-CH----HHHHHhhhhhc-ccCceEEEEeCCC
Confidence 3346779999999954 32 45556666664 5788899998773
No 296
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=55.15 E-value=83 Score=23.18 Aligned_cols=82 Identities=13% Similarity=0.003 Sum_probs=49.5
Q ss_pred cCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHh
Q 024287 104 GKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181 (269)
Q Consensus 104 ~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~ 181 (269)
....+...+..++.+. .+.+++|+|.+.++ +..+.+.|...-+.++ .=|+-.... .
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~----------a~~lD~~LW~~~~~sF---lPH~~~~~~---------~ 67 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQ----------AEALDEALWTFRDESF---LPHGLAGEG---------P 67 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHH----------HHHHHHHhcCCCCCcC---CCCCcCCCC---------C
Confidence 4556778888888654 57899999998876 4458888876533222 223322111 0
Q ss_pred cCCccEEEEeccccccCCCCCCCeEEEec
Q 024287 182 QGGGYLLVSTDIAARGIDLPETTHIYNFD 210 (269)
Q Consensus 182 ~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~ 210 (269)
.....|+++.+. .-+.+..+++||.+
T Consensus 68 ~~~~PV~l~~~~---~~~~~~~~~LinL~ 93 (142)
T PRK05728 68 AAGQPVLLTWPG---KRNANHRDLLINLD 93 (142)
T ss_pred CCCCCEEEEcCC---CCCCCCCcEEEECC
Confidence 124578887321 12345667888887
No 297
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=54.72 E-value=8.8 Score=37.23 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=14.2
Q ss_pred cCcccEEEEecccccc
Q 024287 15 LESVQVLVIDEVDFLF 30 (269)
Q Consensus 15 l~~~~~lViDE~~~l~ 30 (269)
+...+++||||||++.
T Consensus 434 ~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 434 FARNKVLVFDEAQKLM 449 (820)
T ss_pred CCCCCEEEEECcchhH
Confidence 5778999999999886
No 298
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=54.21 E-value=12 Score=28.75 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=18.0
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhh
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLAS 45 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~ 45 (269)
....+++||||+|.+-... ...+...++.
T Consensus 94 ~~~~kviiide~~~l~~~~--~~~Ll~~le~ 122 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA--ANALLKTLEE 122 (188)
T ss_pred cCCeEEEEEechhhhCHHH--HHHHHHHhcC
Confidence 3566799999999764322 2444455544
No 299
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=54.10 E-value=31 Score=28.24 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=23.8
Q ss_pred cEEEEeccccccCCc---hhhhHHHHHHhhhccCCCccEEEEeccCCch
Q 024287 19 QVLVIDEVDFLFNSS---KQVSSLKKLLASYSSCNNRQTVFASASIPQH 64 (269)
Q Consensus 19 ~~lViDE~~~l~~~~---~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~ 64 (269)
.+++|||+|.+...+ +....+..++..+.. ....++++-|+.+..
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~-~~~~~~vila~~~~~ 154 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED-NRNEFVLILAGYSDE 154 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhc-cCCCEEEEecCCcch
Confidence 599999999876422 123455555554431 223334333444443
No 300
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=53.95 E-value=23 Score=29.81 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=23.9
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
...+++|+||+|.+.... ....+..+++..+ .+.++++.|
T Consensus 99 ~~~~vliiDe~d~l~~~~-~~~~L~~~le~~~--~~~~~Ilt~ 138 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLAD-AQRHLRSFMEAYS--KNCSFIITA 138 (316)
T ss_pred CCCeEEEEECcccccCHH-HHHHHHHHHHhcC--CCceEEEEc
Confidence 456899999999763322 2345555565542 445555544
No 301
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=53.59 E-value=17 Score=25.75 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCccEEEEeccccccCCCCC------CCeEEEec
Q 024287 174 AASLLEVRQGGGYLLVSTDIAARGIDLPE------TTHIYNFD 210 (269)
Q Consensus 174 ~~~~~~f~~~~~~iLv~T~~~~~Gidi~~------~~~Vi~~~ 210 (269)
.+..+...+|++.+.|-|.--.-|+|++. -.+||+||
T Consensus 64 ~emi~~l~~geIel~VLttqpDIai~l~~kVldnEnRYViDFD 106 (144)
T PF10657_consen 64 PEMIDKLISGEIELFVLTTQPDIAINLQQKVLDNENRYVIDFD 106 (144)
T ss_pred HHHHHHHhcCceEEEEEccCCCeeechhhhhhcccceEEEecc
Confidence 46788889999999999988888888753 26899988
No 302
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=53.44 E-value=32 Score=31.92 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=45.1
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD 192 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~ 192 (269)
.+-|||..+-..-+ .--...|... |+.+..++|.++..+|..++..+..|..++|.-++
T Consensus 57 ~G~TLVVSPLiSLM----------~DQV~~l~~~---Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 57 EGLTLVVSPLISLM----------KDQVDQLEAA---GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred CCCEEEECchHHHH----------HHHHHHHHHc---CceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 46788888865432 1133444444 78999999999999999999999999999886655
No 303
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=53.35 E-value=62 Score=25.30 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=33.9
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchh
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHR 65 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~ 65 (269)
-++.++++||-+-+...+......+.++++... +.--.+.+|||..+..
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~--~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALN--PDEVHLVLSATMGQED 129 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHS--SSEEEEEEEGGGGGHH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcC--CccceEEEecccChHH
Confidence 355789999999866555445667777777663 5556777899987663
No 304
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=53.22 E-value=74 Score=22.05 Aligned_cols=60 Identities=10% Similarity=0.106 Sum_probs=37.0
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI 193 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 193 (269)
..+++++++++...+.. ..+.+......+..+..+++......+. ........++++|..
T Consensus 29 ~~~~~lv~~p~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~ 88 (144)
T cd00046 29 KGGQVLVLAPTRELANQ----------VAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPG 88 (144)
T ss_pred cCCCEEEEcCcHHHHHH----------HHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECcH
Confidence 56899999999875444 3344444332135677788776655543 222345778888886
No 305
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=53.06 E-value=20 Score=27.58 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=22.7
Q ss_pred ccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCC
Q 024287 18 VQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIP 62 (269)
Q Consensus 18 ~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~ 62 (269)
.+++|||||=.+ -.+.+.+++ .....++||.|..
T Consensus 91 ~DlliVDEAAaI-----p~p~L~~ll------~~~~~vv~stTi~ 124 (177)
T PF05127_consen 91 ADLLIVDEAAAI-----PLPLLKQLL------RRFPRVVFSTTIH 124 (177)
T ss_dssp -SCEEECTGGGS------HHHHHHHH------CCSSEEEEEEEBS
T ss_pred CCEEEEechhcC-----CHHHHHHHH------hhCCEEEEEeecc
Confidence 479999999843 246666766 3455677777753
No 306
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=53.03 E-value=24 Score=24.83 Aligned_cols=15 Identities=53% Similarity=0.674 Sum_probs=12.3
Q ss_pred ccEEEEeccccccCC
Q 024287 18 VQVLVIDEVDFLFNS 32 (269)
Q Consensus 18 ~~~lViDE~~~l~~~ 32 (269)
-.++++||+|.+...
T Consensus 59 ~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPK 73 (132)
T ss_dssp SEEEEEETGGGTSHH
T ss_pred ceeeeeccchhcccc
Confidence 479999999987644
No 307
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=52.70 E-value=37 Score=26.88 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=21.7
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEec
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASA 59 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SA 59 (269)
.+||+|||+.+ ....+..++... +.+.++++++-
T Consensus 121 ~~iIvDEaQN~-----t~~~~k~ilTR~--g~~skii~~GD 154 (205)
T PF02562_consen 121 AFIIVDEAQNL-----TPEELKMILTRI--GEGSKIIITGD 154 (205)
T ss_dssp EEEEE-SGGG-------HHHHHHHHTTB---TT-EEEEEE-
T ss_pred eEEEEecccCC-----CHHHHHHHHccc--CCCcEEEEecC
Confidence 69999999964 245677777765 36778888774
No 308
>PRK06835 DNA replication protein DnaC; Validated
Probab=52.48 E-value=21 Score=30.54 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=30.7
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
.+.++++||||+++......+....+..++.... ....++++.| .+++
T Consensus 243 ~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~-~~~k~tIiTS-Nl~~ 290 (329)
T PRK06835 243 LLINCDLLIIDDLGTEKITEFSKSELFNLINKRL-LRQKKMIIST-NLSL 290 (329)
T ss_pred HhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHH-HCCCCEEEEC-CCCH
Confidence 4568899999999966545555567777776553 1245555544 4443
No 309
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=52.44 E-value=25 Score=30.83 Aligned_cols=49 Identities=10% Similarity=0.175 Sum_probs=31.8
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCch
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQH 64 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~ 64 (269)
+++.++|+||++.++......+..+.+++.... ...-.++.+|||....
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~-~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACG-RDAEFHLAVSSTTKTS 300 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcC-CCCeEEEEEcCCCCHH
Confidence 577899999999976544334455556655432 1223567799998644
No 310
>COG1485 Predicted ATPase [General function prediction only]
Probab=52.23 E-value=17 Score=31.21 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=34.3
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCch
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQH 64 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~ 64 (269)
..+.+++.|||++ +.+.+ ..-.+..+++.+- ..+..++..|-|.|+.
T Consensus 128 ~~~~~vLCfDEF~-VtDI~-DAMiL~rL~~~Lf-~~GV~lvaTSN~~P~~ 174 (367)
T COG1485 128 AAETRVLCFDEFE-VTDIA-DAMILGRLLEALF-ARGVVLVATSNTAPDN 174 (367)
T ss_pred HhcCCEEEeeeee-ecChH-HHHHHHHHHHHHH-HCCcEEEEeCCCChHH
Confidence 4567899999999 66666 3355666666653 4688888899888776
No 311
>PRK04132 replication factor C small subunit; Provisional
Probab=51.82 E-value=23 Score=34.40 Aligned_cols=38 Identities=21% Similarity=0.461 Sum_probs=23.9
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
+.+++|+||+|.|-... ...+.++++..+ .+..+++.+
T Consensus 630 ~~KVvIIDEaD~Lt~~A--QnALLk~lEep~--~~~~FILi~ 667 (846)
T PRK04132 630 SFKIIFLDEADALTQDA--QQALRRTMEMFS--SNVRFILSC 667 (846)
T ss_pred CCEEEEEECcccCCHHH--HHHHHHHhhCCC--CCeEEEEEe
Confidence 56899999999775332 356667776532 344444443
No 312
>PRK07413 hypothetical protein; Validated
Probab=51.77 E-value=25 Score=30.73 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=32.9
Q ss_pred CcccEEEEeccccccCCc-hhhhHHHHHHhhhccCCCccEEEEecc-CCchhhHHHHHH
Q 024287 16 ESVQVLVIDEVDFLFNSS-KQVSSLKKLLASYSSCNNRQTVFASAS-IPQHRRFLHNCI 72 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~-~~~~~i~~i~~~~~~~~~~q~i~~SAT-l~~~~~~l~~~~ 72 (269)
...++||+||+-..++.+ -....+..+++.. +...-+|+.+-. .|+.+-.+++.+
T Consensus 304 g~ydlvVLDEi~~Al~~gli~~eevi~~L~~r--p~~~evVLTGR~~ap~~lie~ADlV 360 (382)
T PRK07413 304 GLYKTIILDELNPTVDLELLPVEPIVQTLLRK--PRDTEVIITGRCKNQPAYFDLASVH 360 (382)
T ss_pred CCCCEEEEechHHHHHCCCccHHHHHHHHHhC--CCCCEEEEeCCCCCCHHHHHhCchh
Confidence 445699999999777776 1123444444443 244556666655 677666555544
No 313
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.74 E-value=15 Score=34.39 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=17.6
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhh
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLAS 45 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~ 45 (269)
...+++||||+|.|.... ...+.+.++.
T Consensus 123 g~~KV~IIDEvh~Ls~~a--~NaLLKtLEE 150 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTA--FNAMLKTLEE 150 (618)
T ss_pred CCceEEEEEChhhCCHHH--HHHHHHhccc
Confidence 457899999999764333 2344444443
No 314
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=51.73 E-value=15 Score=31.67 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=23.6
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
...+++||||+|.|-... ...+.+.++.- +.+.-++++|
T Consensus 140 g~~rVviIDeAd~l~~~a--anaLLk~LEEp--p~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA--ANAILKTLEEP--PARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHHH--HHHHHHHHhcC--CCCceEEEEE
Confidence 356799999999774333 34566666552 2444555554
No 315
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.38 E-value=14 Score=35.96 Aligned_cols=28 Identities=36% Similarity=0.447 Sum_probs=18.3
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhh
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLAS 45 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~ 45 (269)
...+++||||+|.|-. + ....+.+.++.
T Consensus 118 gk~KViIIDEAh~LT~-e-AqNALLKtLEE 145 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR-S-SFNALLKTLEE 145 (944)
T ss_pred CCcEEEEEechHhcCH-H-HHHHHHHHHhc
Confidence 4567999999997632 2 23555556655
No 316
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=51.24 E-value=27 Score=30.85 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=35.4
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHH
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFL 68 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l 68 (269)
++++++||.++.+.....--..+.-+++.+. ..+.|+++.|...|..+..+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~-~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALL-ENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHH-hcCCEEEEEcCCCchhhccc
Confidence 7999999999977655323356666666665 24458888887777775533
No 317
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=51.22 E-value=32 Score=28.81 Aligned_cols=39 Identities=21% Similarity=0.465 Sum_probs=23.2
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
...+++++||+|.+.... ...+..+++..+ ....+++.+
T Consensus 101 ~~~~vviiDe~~~l~~~~--~~~L~~~le~~~--~~~~lIl~~ 139 (319)
T PRK00440 101 APFKIIFLDEADNLTSDA--QQALRRTMEMYS--QNTRFILSC 139 (319)
T ss_pred CCceEEEEeCcccCCHHH--HHHHHHHHhcCC--CCCeEEEEe
Confidence 346799999999764322 345555555433 445555544
No 318
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=51.01 E-value=17 Score=31.50 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=22.6
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
.++.|||+| |++...+ .-+.+.++. .-.++++|.
T Consensus 293 GVLFIDEvH-mLDIE~F-sFlnrAlEs----e~aPIii~A 326 (450)
T COG1224 293 GVLFIDEVH-MLDIECF-SFLNRALES----ELAPIIILA 326 (450)
T ss_pred ceEEEechh-hhhHHHH-HHHHHHhhc----ccCcEEEEE
Confidence 589999999 7776633 444444443 556777775
No 319
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=50.85 E-value=16 Score=33.45 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=24.5
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
....+++||||+|.|-... ...+.+.++..+ ....+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A--~NALLK~LEEpp--~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA--FNALLKTLEEPP--SYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH--HHHHHHHHhhcC--CceEEEEEE
Confidence 3567899999999764322 345566665532 445555554
No 320
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.65 E-value=15 Score=31.94 Aligned_cols=39 Identities=28% Similarity=0.341 Sum_probs=21.5
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
+..+++||||+|.+.... ...+.+.++.. +....+++.+
T Consensus 118 ~~~kviIIDEa~~l~~~a--~naLLk~lEe~--~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHS--FNALLKTLEEP--PQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHH--HHHHHHHHhcC--CCCeEEEEEc
Confidence 456799999999764322 23444444432 2344444443
No 321
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.49 E-value=15 Score=34.50 Aligned_cols=40 Identities=28% Similarity=0.385 Sum_probs=23.1
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
...+++||||+|.|.... ...+.+.++..+ ....+|+ .+|
T Consensus 117 gk~KV~IIDEVh~LS~~A--~NALLKtLEEPP--~~v~FIL-aTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS--FNALLKTLEEPP--EHVKFLF-ATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHH--HHHHHHHHhcCC--CCcEEEE-EEC
Confidence 356799999999654332 345556665432 3344444 444
No 322
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=50.48 E-value=17 Score=28.46 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=23.8
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
+...++|||||+-.+ + ...+..++.... ..+.++++++=.
T Consensus 91 ~~~~~vliVDEasmv-~----~~~~~~ll~~~~-~~~~klilvGD~ 130 (196)
T PF13604_consen 91 LPKKDVLIVDEASMV-D----SRQLARLLRLAK-KSGAKLILVGDP 130 (196)
T ss_dssp -TSTSEEEESSGGG--B----HHHHHHHHHHS--T-T-EEEEEE-T
T ss_pred CCcccEEEEeccccc-C----HHHHHHHHHHHH-hcCCEEEEECCc
Confidence 566789999999943 2 244555665553 246788888754
No 323
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=50.09 E-value=11 Score=37.05 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=14.7
Q ss_pred ecCcccEEEEeccccccC
Q 024287 14 KLESVQVLVIDEVDFLFN 31 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~ 31 (269)
-+...+++||||||++.+
T Consensus 452 ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 452 LLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred cCCCCCeEEEECCchHHH
Confidence 356679999999999863
No 324
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.85 E-value=26 Score=32.77 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=12.1
Q ss_pred CcccEEEEecccccc
Q 024287 16 ESVQVLVIDEVDFLF 30 (269)
Q Consensus 16 ~~~~~lViDE~~~l~ 30 (269)
+..+++||||+|.|-
T Consensus 118 g~~kVIIIDEad~Lt 132 (624)
T PRK14959 118 GRYKVFIIDEAHMLT 132 (624)
T ss_pred CCceEEEEEChHhCC
Confidence 456799999999763
No 325
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=48.57 E-value=39 Score=25.97 Aligned_cols=11 Identities=45% Similarity=0.697 Sum_probs=10.2
Q ss_pred ccEEEEecccc
Q 024287 18 VQVLVIDEVDF 28 (269)
Q Consensus 18 ~~~lViDE~~~ 28 (269)
+++|.|||+|.
T Consensus 77 ~dvI~IDEaQF 87 (176)
T PF00265_consen 77 YDVIGIDEAQF 87 (176)
T ss_dssp CSEEEESSGGG
T ss_pred CCEEEEechHh
Confidence 89999999994
No 326
>PHA00012 I assembly protein
Probab=48.56 E-value=40 Score=28.87 Aligned_cols=52 Identities=19% Similarity=0.198 Sum_probs=32.0
Q ss_pred CcccEEEEeccccccCC---c-hhhhHHHHHHhhhccCCCccEEEEeccCCchhhHH
Q 024287 16 ESVQVLVIDEVDFLFNS---S-KQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFL 68 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~---~-~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l 68 (269)
..=.++|+||||..+.. + .....+.+.+...+ ....-++++|-.......++
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hR-h~G~DvilITQ~ps~VDs~I 135 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHAR-KLGWDIIFIIQDISIMDKQA 135 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhc-cCCceEEEEcCCHHHHhHHH
Confidence 66679999999988753 2 12233555454443 35678888876654433333
No 327
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.03 E-value=17 Score=33.37 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=22.7
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
...+++||||+|.|.... ...+.+.++.. +....+|+.+
T Consensus 118 ~~~kVvIIDEad~ls~~a--~naLLK~LEep--p~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSA--FNAMLKTLEEP--PEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHH--HHHHHHHHhCC--CCCEEEEEEe
Confidence 456799999999764322 23445555442 2445555544
No 328
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=47.97 E-value=23 Score=30.80 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=33.1
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCch
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQH 64 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~ 64 (269)
.+...+|.|||+| +-+-+ ..-.+..+++.+- ..+.-+|..|-+.|..
T Consensus 125 ~~~~~lLcfDEF~-V~Dia-DAmil~rLf~~l~-~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 125 AKESRLLCFDEFQ-VTDIA-DAMILKRLFEALF-KRGVVLVATSNRPPED 171 (362)
T ss_pred HhcCCEEEEeeee-ccchh-HHHHHHHHHHHHH-HCCCEEEecCCCChHH
Confidence 4556799999999 65666 3466677777663 4667777778777665
No 329
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=47.60 E-value=13 Score=36.35 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=13.8
Q ss_pred cCcccEEEEeccccccC
Q 024287 15 LESVQVLVIDEVDFLFN 31 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~ 31 (269)
+...+++||||||.+.+
T Consensus 438 lp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 438 FPSFRDLIIDEAHHLPD 454 (850)
T ss_pred CCCCCEEEEECcchHHH
Confidence 45568999999999864
No 330
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=47.51 E-value=20 Score=33.94 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=22.7
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
...+++||||+|.|.. + ....+.+.++..+ ....+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~-~-A~NALLKtLEEPp--~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSK-S-AFNAMLKTLEEPP--EHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCH-H-HHHHHHHHHHhCC--CCcEEEEEe
Confidence 4568999999996532 2 2244555555432 445555544
No 331
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=47.30 E-value=40 Score=30.98 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=48.7
Q ss_pred ccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCCCcce
Q 024287 18 VQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLH 97 (269)
Q Consensus 18 ~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 97 (269)
.-.+||||+|. -=.|.....+-+.+..+. ...|++++|- +|+....- . ..+.+.+... .....
T Consensus 454 ~ptlIFDEVD~-GIsG~~A~aVg~~L~~Ls--~~~QVl~VTH-lPQVAa~a----d--------~H~~V~K~~~-~~~T~ 516 (557)
T COG0497 454 TPTLIFDEVDT-GISGRVAQAVGKKLRRLS--EHHQVLCVTH-LPQVAAMA----D--------THFLVEKESE-DGRTE 516 (557)
T ss_pred CCeEEEecccC-CCChHHHHHHHHHHHHHh--cCceEEEEec-HHHHHhhh----c--------ceEEEEEecC-CCceE
Confidence 45899999993 333445566677777764 8999999994 45532211 1 1112221111 12234
Q ss_pred eEEEEecCcchHHHHHHHHh
Q 024287 98 HRFVICGKKMKYQTLLSLIQ 117 (269)
Q Consensus 98 ~~~~~~~~~~k~~~l~~ll~ 117 (269)
..+...+.+.|.+.+.+++.
T Consensus 517 s~V~~L~~eeRveEiARMl~ 536 (557)
T COG0497 517 SRVRPLDKEERVEEIARMLG 536 (557)
T ss_pred EeeeeCCHhHHHHHHHHHhc
Confidence 44555566788888888874
No 332
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=47.23 E-value=38 Score=27.80 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=48.1
Q ss_pred ceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc----c--cc
Q 024287 123 SGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI----A--AR 196 (269)
Q Consensus 123 ~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~----~--~~ 196 (269)
.++|.|.+++-|-.. ..=++.+.+..+ ..++..+.|+++-+.-++.++. -..|+|+|+- + .+
T Consensus 112 svlvmchtrelafqi-------~~ey~rfskymP-~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k 179 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQI-------SKEYERFSKYMP-SVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNR 179 (387)
T ss_pred EEEEEeccHHHHHHH-------HHHHHHHHhhCC-CceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhc
Confidence 578999998865441 222333444433 5789999999987766555443 5678999982 2 34
Q ss_pred cCCCCCCCeEEE
Q 024287 197 GIDLPETTHIYN 208 (269)
Q Consensus 197 Gidi~~~~~Vi~ 208 (269)
.+++.++.+.+.
T Consensus 180 ~l~lk~vkhFvl 191 (387)
T KOG0329|consen 180 SLNLKNVKHFVL 191 (387)
T ss_pred cCchhhcceeeh
Confidence 577777777663
No 333
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.04 E-value=18 Score=32.79 Aligned_cols=28 Identities=39% Similarity=0.530 Sum_probs=18.1
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhh
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLAS 45 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~ 45 (269)
+..+++||||+|.|.... ...+.+.++.
T Consensus 115 ~~~KVvIIDEah~Ls~~A--~NaLLK~LEe 142 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSA--FNALLKTLEE 142 (491)
T ss_pred CCceEEEEeChHhCCHHH--HHHHHHHHhC
Confidence 577899999999654322 2445555554
No 334
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=46.85 E-value=41 Score=23.75 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=18.9
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhh
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASY 46 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~ 46 (269)
...+..++|+||+|.+.. . ....+...+...
T Consensus 81 ~~~~~~~lilDe~~~~~~-~-~~~~~~~~i~~~ 111 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSR-G-AQNALLRVLETL 111 (151)
T ss_pred ccCCCeEEEEeChhhhhH-H-HHHHHHHHHHhc
Confidence 345668999999997622 1 234455555544
No 335
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=46.68 E-value=69 Score=31.05 Aligned_cols=62 Identities=6% Similarity=0.003 Sum_probs=42.7
Q ss_pred HhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCC-hhHHHHHHHHHhcCCccEEEEec
Q 024287 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMN-FNSRAASLLEVRQGGGYLLVSTD 192 (269)
Q Consensus 116 l~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~-~~~r~~~~~~f~~~~~~iLv~T~ 192 (269)
+....+.+++|.++|+.-|... ......++... ++.+..+.|+++ +.+|.... ...|+++|.
T Consensus 114 l~al~G~~v~VvTpt~~LA~qd------~e~~~~l~~~l---Gl~v~~i~g~~~~~~~r~~~y------~~dIvygT~ 176 (790)
T PRK09200 114 LNALEGKGVHLITVNDYLAKRD------AEEMGQVYEFL---GLTVGLNFSDIDDASEKKAIY------EADIIYTTN 176 (790)
T ss_pred HHHHcCCCeEEEeCCHHHHHHH------HHHHHHHHhhc---CCeEEEEeCCCCcHHHHHHhc------CCCEEEECC
Confidence 3455678999999999877663 22333333322 688999999999 77776432 267999985
No 336
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=46.60 E-value=22 Score=32.10 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=22.5
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
+..++|+||+|.+-+.. ....+..-.. ...+++++.+|
T Consensus 123 ~~~~~i~DE~h~~~~~~-~~~~l~~g~~---~r~~pl~~~IS 160 (477)
T PF03354_consen 123 NPSLAIFDELHAHKDDE-LYDALESGMG---ARPNPLIIIIS 160 (477)
T ss_pred CCceEEEeCCCCCCCHH-HHHHHHhhhc---cCCCceEEEEe
Confidence 45799999999653322 3333333333 34667777775
No 337
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=46.54 E-value=25 Score=33.63 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=26.6
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
...++||+||++ |++ ...+..++..++ ...++++++-.
T Consensus 415 ~~~~llIvDEaS-Mvd----~~~~~~Ll~~~~--~~~rlilvGD~ 452 (720)
T TIGR01448 415 IDCDLLIVDESS-MMD----TWLALSLLAALP--DHARLLLVGDT 452 (720)
T ss_pred ccCCEEEEeccc-cCC----HHHHHHHHHhCC--CCCEEEEECcc
Confidence 457899999999 443 244566666654 67888888655
No 338
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.48 E-value=20 Score=33.36 Aligned_cols=28 Identities=14% Similarity=0.426 Sum_probs=18.5
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhh
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLAS 45 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~ 45 (269)
...+++||||+|.|.... ...+.+.++.
T Consensus 117 ~~~KVvIIDEah~Lt~~A--~NALLK~LEE 144 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG--FNALLKIVEE 144 (584)
T ss_pred CCceEEEEECCCcCCHHH--HHHHHHHHhc
Confidence 567899999999664322 2455555554
No 339
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=46.37 E-value=78 Score=30.85 Aligned_cols=62 Identities=8% Similarity=0.071 Sum_probs=43.8
Q ss_pred HhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc
Q 024287 116 IQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI 193 (269)
Q Consensus 116 l~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 193 (269)
+....+.++.|.++|..-|... ++.+...+. -++++..+.|+++..+|...+. ..|+++|..
T Consensus 117 l~aL~G~~V~IvTpn~yLA~rd----------~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~~ 179 (830)
T PRK12904 117 LNALTGKGVHVVTVNDYLAKRD----------AEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTNN 179 (830)
T ss_pred HHHHcCCCEEEEecCHHHHHHH----------HHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECCc
Confidence 4555667888999998876663 333333322 2788999999999998877753 578888874
No 340
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=46.25 E-value=28 Score=32.43 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=28.1
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
.-.+++|||||+- |++ ...+..+++.++ ...++|+++=.
T Consensus 257 ~l~~dvlIiDEaS-Mvd----~~l~~~ll~al~--~~~rlIlvGD~ 295 (586)
T TIGR01447 257 PLPLDVLVVDEAS-MVD----LPLMAKLLKALP--PNTKLILLGDK 295 (586)
T ss_pred CCcccEEEEcccc-cCC----HHHHHHHHHhcC--CCCEEEEECCh
Confidence 3467899999998 554 345667777665 67888888644
No 341
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=45.78 E-value=1.3e+02 Score=29.40 Aligned_cols=28 Identities=18% Similarity=0.409 Sum_probs=20.5
Q ss_pred cEEEEeccccccCCCCCC--CeEEEecCCC
Q 024287 186 YLLVSTDIAARGIDLPET--THIYNFDLPR 213 (269)
Q Consensus 186 ~iLv~T~~~~~Gidi~~~--~~Vi~~~~p~ 213 (269)
-..||=--.++|+|+.+- ..||..++|.
T Consensus 627 ~~aVcRGKVSEGlDFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 627 FFAVCRGKVSEGLDFSDDNGRAVIITGLPY 656 (945)
T ss_pred EEEEecccccCCCCccccCCceeEEecCCC
Confidence 345666678899999654 5688888774
No 342
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=45.49 E-value=47 Score=28.11 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=34.1
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhc-----cCCCccEEEEeccCCchhhHHH
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS-----SCNNRQTVFASASIPQHRRFLH 69 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~-----~~~~~q~i~~SATl~~~~~~l~ 69 (269)
-.=+++|+||+|+|- .| ....+.-.+..++ ...+.-+|++|.+-...+....
T Consensus 177 C~rslFIFDE~DKmp-~g-Lld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~a 233 (344)
T KOG2170|consen 177 CQRSLFIFDEVDKLP-PG-LLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIA 233 (344)
T ss_pred cCCceEEechhhhcC-Hh-HHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHH
Confidence 334699999999763 34 3456666666443 2356788899988776655443
No 343
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=44.91 E-value=33 Score=30.18 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=25.1
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
...+++||||+|.|-... ...+.+.++. +++.-+++++||-+.
T Consensus 116 ~~~kViiIDead~m~~~a--anaLLk~LEe---p~~~~~fIL~a~~~~ 158 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA--ANALLKAVEE---PPPRTVWLLCAPSPE 158 (394)
T ss_pred CCcEEEEEechhhcCHHH--HHHHHHHhhc---CCCCCeEEEEECChH
Confidence 466799999999874333 2344445543 234455555555443
No 344
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.69 E-value=21 Score=33.19 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=19.0
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhh
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLAS 45 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~ 45 (269)
....+++||||+|.|.. + ....+.+.++.
T Consensus 117 ~~~~KVvIIdev~~Lt~-~-a~naLLk~LEe 145 (576)
T PRK14965 117 RSRYKIFIIDEVHMLST-N-AFNALLKTLEE 145 (576)
T ss_pred cCCceEEEEEChhhCCH-H-HHHHHHHHHHc
Confidence 35678999999996543 3 22455666655
No 345
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.66 E-value=25 Score=31.09 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=22.9
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
.-.++++||+|++.... .. .++..+ ....+++++||-.+
T Consensus 92 ~~~vL~IDEi~~l~~~~--q~---~LL~~l---e~~~iilI~att~n 130 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQ--QD---ALLPHV---EDGTITLIGATTEN 130 (413)
T ss_pred CceEEEEechhhhCHHH--HH---HHHHHh---hcCcEEEEEeCCCC
Confidence 45699999999764322 22 333333 23567777776443
No 346
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=44.51 E-value=12 Score=35.64 Aligned_cols=15 Identities=27% Similarity=0.270 Sum_probs=12.6
Q ss_pred cccEEEEeccccccC
Q 024287 17 SVQVLVIDEVDFLFN 31 (269)
Q Consensus 17 ~~~~lViDE~~~l~~ 31 (269)
..+++||||||++.+
T Consensus 246 ~~~~lViDEAH~L~d 260 (697)
T PRK11747 246 ENLLYVLDEGHHLPD 260 (697)
T ss_pred CCCEEEEECccchHH
Confidence 467899999999863
No 347
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=44.25 E-value=24 Score=32.22 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=16.9
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHh
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLA 44 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~ 44 (269)
...+++||||+|.+.. + ....+.+.++
T Consensus 127 ~~~KVvIIDEa~~Ls~-~-a~naLLk~LE 153 (507)
T PRK06645 127 GKHKIFIIDEVHMLSK-G-AFNALLKTLE 153 (507)
T ss_pred CCcEEEEEEChhhcCH-H-HHHHHHHHHh
Confidence 5678999999996532 2 2344444444
No 348
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=44.23 E-value=13 Score=28.63 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=26.1
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEec
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASA 59 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SA 59 (269)
.+.+++++|+||+-..-........+..++.... .+.++++.|-
T Consensus 105 ~l~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~--~~~~tIiTSN 148 (178)
T PF01695_consen 105 RLKRVDLLILDDLGYEPLSEWEAELLFEIIDERY--ERKPTIITSN 148 (178)
T ss_dssp HHHTSSCEEEETCTSS---HHHHHCTHHHHHHHH--HT-EEEEEES
T ss_pred ccccccEecccccceeeecccccccchhhhhHhh--cccCeEeeCC
Confidence 4678899999999844333344556666666554 2346666553
No 349
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=44.10 E-value=23 Score=32.77 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=12.6
Q ss_pred cCcccEEEEecccccc
Q 024287 15 LESVQVLVIDEVDFLF 30 (269)
Q Consensus 15 l~~~~~lViDE~~~l~ 30 (269)
....+++||||+|.|.
T Consensus 117 ~~~~kViIIDE~~~Lt 132 (559)
T PRK05563 117 EAKYKVYIIDEVHMLS 132 (559)
T ss_pred cCCeEEEEEECcccCC
Confidence 3457899999999664
No 350
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=44.10 E-value=30 Score=32.27 Aligned_cols=40 Identities=28% Similarity=0.378 Sum_probs=23.1
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
....+++||||+|.|.... ...+.+.++..+ ....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a--~naLLKtLEePp--~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA--FNALLKTLEEPP--PHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH--HHHHHHHHHhCC--CCeEEEEEe
Confidence 4567899999999764322 244455554422 344455544
No 351
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=43.95 E-value=55 Score=28.23 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=34.2
Q ss_pred hhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCC
Q 024287 3 SLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIP 62 (269)
Q Consensus 3 rl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~ 62 (269)
+|+..|++|.-.-+.--++|+||+| ++.....-..+..++.... ....++.+++-|-.
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfD-lf~~h~rQtllYnlfDisq-s~r~Piciig~Ttr 180 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFD-LFAPHSRQTLLYNLFDISQ-SARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhh-ccccchhhHHHHHHHHHHh-hcCCCeEEEEeecc
Confidence 4677788877666666789999999 4433323234444444331 23555655555543
No 352
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=43.79 E-value=31 Score=35.08 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=31.2
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEec
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASA 59 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SA 59 (269)
-+.|+||+|.-+|.. +...+-.++.... .+.|+|++|-
T Consensus 1090 Pf~vLDEVDAaLD~~-Nv~r~~~~i~e~s--~~sQFIvITh 1127 (1163)
T COG1196 1090 PFYVLDEVDAALDDA-NVERVARLIKEMS--KETQFIVITH 1127 (1163)
T ss_pred CeeeeccchhhccHH-HHHHHHHHHHHhC--cCCeEEEEEc
Confidence 389999999888766 6677778887765 8999999983
No 353
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=43.68 E-value=95 Score=30.54 Aligned_cols=69 Identities=9% Similarity=0.016 Sum_probs=48.7
Q ss_pred HHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEE
Q 024287 110 QTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLL 188 (269)
Q Consensus 110 ~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iL 188 (269)
..+..++....+.++.|.+++.--|.. -++++...|. -++++.++.+++++.+|.+.+. ..|+
T Consensus 112 A~l~a~l~al~G~~VhvvT~ndyLA~R----------D~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~ 175 (913)
T PRK13103 112 GTLAVYLNALSGKGVHVVTVNDYLARR----------DANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADIT 175 (913)
T ss_pred HHHHHHHHHHcCCCEEEEeCCHHHHHH----------HHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEE
Confidence 344445556678889999988776555 3334443332 2789999999999999988776 5788
Q ss_pred EEeccc
Q 024287 189 VSTDIA 194 (269)
Q Consensus 189 v~T~~~ 194 (269)
.+|...
T Consensus 176 YGT~~e 181 (913)
T PRK13103 176 YGTNNE 181 (913)
T ss_pred EEcccc
Confidence 888764
No 354
>PRK10536 hypothetical protein; Provisional
Probab=43.58 E-value=34 Score=28.22 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=22.7
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
++||+|||+.+- ...+..++..+. .+.++++.+
T Consensus 178 ~~vIvDEaqn~~-----~~~~k~~ltR~g--~~sk~v~~G 210 (262)
T PRK10536 178 AVVILDEAQNVT-----AAQMKMFLTRLG--ENVTVIVNG 210 (262)
T ss_pred CEEEEechhcCC-----HHHHHHHHhhcC--CCCEEEEeC
Confidence 699999999642 255566666553 667777765
No 355
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.49 E-value=23 Score=32.19 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=12.6
Q ss_pred cCcccEEEEecccccc
Q 024287 15 LESVQVLVIDEVDFLF 30 (269)
Q Consensus 15 l~~~~~lViDE~~~l~ 30 (269)
.+..+++||||+|.|.
T Consensus 117 ~~~~KVvIIDEad~Lt 132 (486)
T PRK14953 117 KGKYKVYIIDEAHMLT 132 (486)
T ss_pred cCCeeEEEEEChhhcC
Confidence 3566899999999653
No 356
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=43.40 E-value=29 Score=32.49 Aligned_cols=40 Identities=18% Similarity=0.418 Sum_probs=28.8
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
+.-..+++||||+- |.+ ...+..+++.++ ...++|+++-.
T Consensus 262 ~~l~~dvlIvDEaS-Mvd----~~lm~~ll~al~--~~~rlIlvGD~ 301 (615)
T PRK10875 262 NPLHLDVLVVDEAS-MVD----LPMMARLIDALP--PHARVIFLGDR 301 (615)
T ss_pred cCCCCCeEEEChHh-ccc----HHHHHHHHHhcc--cCCEEEEecch
Confidence 34456899999998 543 456667777765 67888888644
No 357
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.39 E-value=24 Score=32.54 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=23.2
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
...+++||||+|+|-... ...+.+.++..+ ....+++.+
T Consensus 118 g~~kViIIDEa~~ls~~a--~naLLK~LEepp--~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS--FNALLKTLEEPP--EYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH--HHHHHHHHhcCC--CCceEEEEE
Confidence 466799999999764322 345556665422 344444444
No 358
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=43.28 E-value=91 Score=30.63 Aligned_cols=62 Identities=10% Similarity=0.076 Sum_probs=43.5
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI 193 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 193 (269)
..+.|++.+++.-|.. ..+.+.+++.... ....+..|+|+.++.+|.++ ..+...||+++..
T Consensus 115 ~a~AL~lYPtnALa~D------Q~~rl~~~~~~~~-~~v~~~~y~Gdt~~~~r~~~----~~~pp~IllTNpd 176 (851)
T COG1205 115 SARALLLYPTNALAND------QAERLRELISDLP-GKVTFGRYTGDTPPEERRAI----IRNPPDILLTNPD 176 (851)
T ss_pred CccEEEEechhhhHhh------HHHHHHHHHHhCC-CcceeeeecCCCChHHHHHH----HhCCCCEEEeCHH
Confidence 3578999999764433 2444555555542 25789999999999998743 4468889988764
No 359
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=43.06 E-value=19 Score=28.96 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=9.7
Q ss_pred cCcccEEEEecccccc
Q 024287 15 LESVQVLVIDEVDFLF 30 (269)
Q Consensus 15 l~~~~~lViDE~~~l~ 30 (269)
++.=.++.|||+|++-
T Consensus 99 l~~~~ILFIDEIHRln 114 (233)
T PF05496_consen 99 LKEGDILFIDEIHRLN 114 (233)
T ss_dssp --TT-EEEECTCCC--
T ss_pred cCCCcEEEEechhhcc
Confidence 4455699999999863
No 360
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=42.44 E-value=25 Score=29.54 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=24.9
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
...+++|+||||.|-... ...+...++.-+ .+..+++.+
T Consensus 108 ~~~kviiidead~mt~~A--~nallk~lEep~--~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTEDA--ANALLKTLEEPP--KNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhHHH--HHHHHHHhccCC--CCeEEEEEc
Confidence 678899999999775433 355666665532 444455444
No 361
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=42.15 E-value=35 Score=32.69 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=24.6
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCch
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQH 64 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~ 64 (269)
+-.++++||+|.+.... + ..+ +..+ .+.++++++||-++.
T Consensus 109 ~~~IL~IDEIh~Ln~~q-Q-daL---L~~l---E~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ-Q-DAL---LPWV---ENGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHHH-H-HHH---HHHh---cCceEEEEEecCCCh
Confidence 45689999999754322 1 223 3222 346788888886554
No 362
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.95 E-value=53 Score=29.71 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=12.7
Q ss_pred cCcccEEEEecccccc
Q 024287 15 LESVQVLVIDEVDFLF 30 (269)
Q Consensus 15 l~~~~~lViDE~~~l~ 30 (269)
.++.+++|+||+|.+.
T Consensus 115 ~~~~kVvIIDE~h~Lt 130 (472)
T PRK14962 115 EGKYKVYIIDEVHMLT 130 (472)
T ss_pred cCCeEEEEEEChHHhH
Confidence 3567899999999763
No 363
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=41.83 E-value=22 Score=35.80 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=25.9
Q ss_pred ccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccC
Q 024287 18 VQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61 (269)
Q Consensus 18 ~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl 61 (269)
-+++|+||+|.+-.+. -..+.++++. ...+.++++.|.
T Consensus 738 WqyLvLDEaqnIKnfk--sqrWQAllnf----nsqrRLLLtgTP 775 (1958)
T KOG0391|consen 738 WQYLVLDEAQNIKNFK--SQRWQALLNF----NSQRRLLLTGTP 775 (1958)
T ss_pred cceeehhhhhhhcchh--HHHHHHHhcc----chhheeeecCCc
Confidence 3499999999886665 2345566654 456777777773
No 364
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=41.82 E-value=32 Score=29.10 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=22.3
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
.++.+||+| |++-.-+ .-+++-++. .-.++++++
T Consensus 290 GVLFIDEvH-MLDIEcF-sFlNrAlE~----d~~Piiima 323 (454)
T KOG2680|consen 290 GVLFIDEVH-MLDIECF-SFLNRALEN----DMAPIIIMA 323 (454)
T ss_pred ceEEEeeeh-hhhhHHH-HHHHHHhhh----ccCcEEEEE
Confidence 589999999 7776633 444554442 456777775
No 365
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=41.53 E-value=27 Score=34.33 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=22.3
Q ss_pred ccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccC
Q 024287 18 VQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61 (269)
Q Consensus 18 ~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl 61 (269)
-++||+||+| ++... -..+..-+..++ . .+.|+++.|.
T Consensus 822 PD~vVCDE~H-iLKNe--ksa~Skam~~ir--t-kRRI~LTGTP 859 (1567)
T KOG1015|consen 822 PDFVVCDEGH-ILKNE--KSAVSKAMNSIR--T-KRRIILTGTP 859 (1567)
T ss_pred CCeEEecchh-hhccc--hHHHHHHHHHHH--h-heeEEeecCc
Confidence 3699999999 55444 234444444443 3 3455556663
No 366
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=41.53 E-value=1.5e+02 Score=28.23 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=64.7
Q ss_pred EEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEe---------------
Q 024287 100 FVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLL--------------- 164 (269)
Q Consensus 100 ~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~--------------- 164 (269)
..-+....|.-.+..+++... .++||.++++..|.. ++..|+..++.+ .|..+
T Consensus 34 l~Gvtgs~kt~~~a~~~~~~~-~p~Lvi~~n~~~A~q----------l~~el~~f~p~~-~V~~f~sy~d~y~pe~y~P~ 101 (655)
T TIGR00631 34 LLGVTGSGKTFTMANVIAQVN-RPTLVIAHNKTLAAQ----------LYNEFKEFFPEN-AVEYFVSYYDYYQPEAYVPS 101 (655)
T ss_pred EECCCCcHHHHHHHHHHHHhC-CCEEEEECCHHHHHH----------HHHHHHHhCCCC-eEEEEeeecccCCccccCCC
Confidence 444555667777777776643 689999999887555 555565554432 23333
Q ss_pred -----cccC--C---hhHHHHHHHHHhcCCccEEEEeccccccCCCCC----CCeEEEecCCCCccccccc
Q 024287 165 -----EEEM--N---FNSRAASLLEVRQGGGYLLVSTDIAARGIDLPE----TTHIYNFDLPRSAIDYLHR 221 (269)
Q Consensus 165 -----h~~~--~---~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~----~~~Vi~~~~p~~~~~~~qr 221 (269)
+... + ...|..++..+..+...|+|+|-.+..|+=-|. ..+.+..+-..+...+..+
T Consensus 102 ~d~~~~k~~~~~~~i~~~R~~al~~L~~~~~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~ 172 (655)
T TIGR00631 102 KDTYIEKDASINDEIERLRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRR 172 (655)
T ss_pred ccccccccCCCChHHHHHHHHHHHHHHhCCCeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHH
Confidence 1111 1 245677777777776667777766566654443 3445555555555555443
No 367
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=41.48 E-value=12 Score=30.90 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=15.2
Q ss_pred cCcccEEEEeccccccCCc
Q 024287 15 LESVQVLVIDEVDFLFNSS 33 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~ 33 (269)
.+..+++||||+|.++=+.
T Consensus 195 ~r~~~~~ivDEvDs~LiDe 213 (266)
T PF07517_consen 195 QRGFDFAIVDEVDSILIDE 213 (266)
T ss_dssp SSSSSEEEECTHHHHTTTG
T ss_pred cCCCCEEEEeccceEEEec
Confidence 5788999999999776443
No 368
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=41.42 E-value=25 Score=33.36 Aligned_cols=42 Identities=33% Similarity=0.339 Sum_probs=28.8
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhh
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASY 46 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~ 46 (269)
|||+.+-|++=.. .+ -++.+||+|++- .|.++..-.++++.+
T Consensus 492 PGkiIq~LK~v~t--~N-PliLiDEvDKlG-~g~qGDPasALLElL 533 (906)
T KOG2004|consen 492 PGKIIQCLKKVKT--EN-PLILIDEVDKLG-SGHQGDPASALLELL 533 (906)
T ss_pred ChHHHHHHHhhCC--CC-ceEEeehhhhhC-CCCCCChHHHHHHhc
Confidence 8999998876221 11 288999999987 555556666666555
No 369
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=40.59 E-value=46 Score=32.26 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=25.4
Q ss_pred EEEEeccccccCCchhhhHHHHHHhhhccCCCccEEE-EeccCCchhh
Q 024287 20 VLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVF-ASASIPQHRR 66 (269)
Q Consensus 20 ~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~-~SATl~~~~~ 66 (269)
++|+||-|++..+...+. ++.+ .+++.++ +|||.+..-.
T Consensus 208 IvIvDEPh~f~~~~k~~~---~i~~-----l~pl~ilRfgATfkd~y~ 247 (985)
T COG3587 208 IVIVDEPHRFLGDDKTYG---AIKQ-----LNPLLILRFGATFKDEYN 247 (985)
T ss_pred EEEecChhhcccchHHHH---HHHh-----hCceEEEEecccchhhhc
Confidence 899999999876543333 3332 2345555 9999887733
No 370
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=40.43 E-value=28 Score=33.73 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=22.1
Q ss_pred CcccEEEEeccccccC--CchhhhHHHHHHhhhc
Q 024287 16 ESVQVLVIDEVDFLFN--SSKQVSSLKKLLASYS 47 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~--~~~~~~~i~~i~~~~~ 47 (269)
+.-.++|+||||.++. .......+.++.+..+
T Consensus 636 ~~~~~~viDEaw~ll~~~~~~~~~~i~~~~r~~R 669 (797)
T TIGR02746 636 KRRKICIIDEAWSLLDGANPQAADFIETGYRRAR 669 (797)
T ss_pred CCceEEEEecHHHHhhcccHHHHHHHHHHHHHHh
Confidence 3457899999999887 4444556666666554
No 371
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=40.19 E-value=63 Score=31.07 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=25.8
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
+++|+||.|++=... ..+..-+.++ ...+.+++|.|.-+
T Consensus 339 ~y~ILDEGH~IrNpn---s~islackki---~T~~RiILSGTPiQ 377 (923)
T KOG0387|consen 339 DYVILDEGHRIRNPN---SKISLACKKI---RTVHRIILSGTPIQ 377 (923)
T ss_pred cEEEecCcccccCCc---cHHHHHHHhc---cccceEEeeCcccc
Confidence 599999999765444 3344444454 46777888888533
No 372
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=40.18 E-value=80 Score=26.30 Aligned_cols=65 Identities=11% Similarity=0.033 Sum_probs=42.0
Q ss_pred eEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCC
Q 024287 124 GIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPET 203 (269)
Q Consensus 124 ~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~ 203 (269)
-+|+|..... ...|.+.+...-+...+|..-..+....+.+....|+. |.+.+|+.--+|.-|+.
T Consensus 27 d~i~~EDTR~--------------t~kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~~g~~-valvSDAG~P~ISDPG~ 91 (276)
T TIGR00096 27 DLFAEEDTRT--------------SKLLLHLGIIATPKAFHIDNEFQEKQNLLAAKLEIGNN-IAVSSDAGPPLISDPGH 91 (276)
T ss_pred CEEEecCchh--------------HHHHHHhcCCCCceEEEecccHhHHHHHHHHHHHcCCc-EEEEecCCCCCcCCccH
Confidence 4888877553 33333333322345566666555556667777777765 88999998888887765
No 373
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=40.11 E-value=48 Score=21.78 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=24.1
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCC
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMN 169 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~ 169 (269)
..++++||++-.. .......|+.. ++.+..+.|+++
T Consensus 51 ~~~vvl~c~~g~~----------a~~~a~~L~~~---G~~v~~l~GG~~ 86 (90)
T cd01524 51 DKEIIVYCAVGLR----------GYIAARILTQN---GFKVKNLDGGYK 86 (90)
T ss_pred CCcEEEEcCCChh----------HHHHHHHHHHC---CCCEEEecCCHH
Confidence 4679999987433 23355566655 447888899875
No 374
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=39.60 E-value=2.1e+02 Score=23.34 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=31.8
Q ss_pred hHHHHHHHhhhcCCCCc-eEEecccCChhHHHHHHHHHhcCCccEEEE
Q 024287 144 TTLLVDFLSNSYKGSSD-VLLLEEEMNFNSRAASLLEVRQGGGYLLVS 190 (269)
Q Consensus 144 ~~~~~~~l~~~~~~~~~-v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~ 190 (269)
++.+.+.|++.| + .. ++.+||-.++++.+++.+.......++++.
T Consensus 118 ~~~a~~~l~~~y-~-l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~V 163 (243)
T PRK03692 118 LAQTEAKLRTQW-N-VNIVGSQDGYFTPEQRQALFERIHASGAKIVTV 163 (243)
T ss_pred HHHHHHHHHHHh-C-CEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 444777777776 3 44 457788888888778888888777666543
No 375
>PRK04195 replication factor C large subunit; Provisional
Probab=39.54 E-value=45 Score=30.18 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=23.1
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEec
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASA 59 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SA 59 (269)
.-++|||||+|.+.... ....+..++..+. ..+.++|+.+.
T Consensus 98 ~~kvIiIDEaD~L~~~~-d~~~~~aL~~~l~-~~~~~iIli~n 138 (482)
T PRK04195 98 RRKLILLDEVDGIHGNE-DRGGARAILELIK-KAKQPIILTAN 138 (482)
T ss_pred CCeEEEEecCccccccc-chhHHHHHHHHHH-cCCCCEEEecc
Confidence 56799999999875432 1123333433332 24556666553
No 376
>CHL00181 cbbX CbbX; Provisional
Probab=39.49 E-value=74 Score=26.60 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=24.7
Q ss_pred cEEEEeccccccCCc----hhhhHHHHHHhhhccCCCccEEEEeccCCchh
Q 024287 19 QVLVIDEVDFLFNSS----KQVSSLKKLLASYSSCNNRQTVFASASIPQHR 65 (269)
Q Consensus 19 ~~lViDE~~~l~~~~----~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~ 65 (269)
+++++||+|.+...+ .....+..++..+- .....++++.||-+...
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me-~~~~~~~vI~ag~~~~~ 173 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVME-NQRDDLVVIFAGYKDRM 173 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHh-cCCCCEEEEEeCCcHHH
Confidence 699999999774321 12234444444332 12234555556655443
No 377
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=39.04 E-value=30 Score=30.07 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=17.3
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhh
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLAS 45 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~ 45 (269)
+..+++||||+|.|-... ...+.+.++.
T Consensus 140 ~~~kVviIDead~m~~~a--anaLLK~LEe 167 (365)
T PRK07471 140 GGWRVVIVDTADEMNANA--ANALLKVLEE 167 (365)
T ss_pred CCCEEEEEechHhcCHHH--HHHHHHHHhc
Confidence 456799999999763222 2444455544
No 378
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.86 E-value=50 Score=29.04 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=17.6
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHh
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLA 44 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~ 44 (269)
.+.-+++||||+|.+-... ...+.+.++
T Consensus 125 ~~~~kvvIIdea~~l~~~~--~~~LLk~LE 152 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAA--FNAFLKTLE 152 (397)
T ss_pred cCCeEEEEEeChhhCCHHH--HHHHHHHHh
Confidence 4567899999999764322 234444444
No 379
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.58 E-value=14 Score=35.20 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=13.7
Q ss_pred ecCcccEEEEeccccccCC
Q 024287 14 KLESVQVLVIDEVDFLFNS 32 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~ 32 (269)
++++ .+|||||||.+.+.
T Consensus 218 ~l~~-~ivI~DEAHNL~d~ 235 (705)
T TIGR00604 218 ELKD-SIVIFDEAHNLDNV 235 (705)
T ss_pred cccc-CEEEEECccchHHH
Confidence 4555 79999999988643
No 380
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=38.32 E-value=99 Score=30.60 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=39.8
Q ss_pred CceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec
Q 024287 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD 192 (269)
Q Consensus 122 ~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~ 192 (269)
+=.||-++|++.|... ...+..+++.. ++.+.+..|+....+. +...+.| ..|+|||.
T Consensus 439 Pi~li~aPtrela~QI------~r~~~kf~k~l---~ir~v~vygg~~~~~q---iaelkRg-~eIvV~tp 496 (997)
T KOG0334|consen 439 PIALILAPTRELAMQI------HREVRKFLKLL---GIRVVCVYGGSGISQQ---IAELKRG-AEIVVCTP 496 (997)
T ss_pred ceEEEEcCCHHHHHHH------HHHHHHHHhhc---CceEEEecCCccHHHH---HHHHhcC-CceEEecc
Confidence 3478999999987773 23333444432 5678888888765554 5666778 77999986
No 381
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=38.03 E-value=36 Score=28.78 Aligned_cols=39 Identities=15% Similarity=0.405 Sum_probs=22.4
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
..-++||+||+|.+.. . ....+..+++..+ ....+++.+
T Consensus 124 ~~~~vlilDe~~~l~~-~-~~~~L~~~le~~~--~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRE-D-AQQALRRIMEQYS--RTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCH-H-HHHHHHHHHHhcc--CCCeEEEEe
Confidence 4457999999996532 2 2345555555432 344555443
No 382
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=38.00 E-value=40 Score=24.58 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=25.4
Q ss_pred cCcccEEEEeccccccCCc---------hhhhHHHHHHhhhccCCCccEEEEeccC
Q 024287 15 LESVQVLVIDEVDFLFNSS---------KQVSSLKKLLASYSSCNNRQTVFASASI 61 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~---------~~~~~i~~i~~~~~~~~~~q~i~~SATl 61 (269)
-.+.+++|+||++.+.+.. .....+.++....+ ..+..+++.+-+.
T Consensus 83 ~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~vv~~~~~~ 137 (165)
T cd01120 83 RGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR-KGGVTVIFTLQVP 137 (165)
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-cCCceEEEEEecC
Confidence 3466799999999765332 11244444444432 2355555555443
No 383
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=37.85 E-value=61 Score=32.05 Aligned_cols=42 Identities=31% Similarity=0.446 Sum_probs=25.0
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
..+.+||+||+|.|...+ + ..+..+++... ....+++++..+
T Consensus 868 r~v~IIILDEID~L~kK~-Q-DVLYnLFR~~~-~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-Q-KVLFTLFDWPT-KINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCccH-H-HHHHHHHHHhh-ccCCeEEEEEec
Confidence 346699999999887643 2 44555555432 234455554444
No 384
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=37.70 E-value=2.8e+02 Score=24.21 Aligned_cols=104 Identities=19% Similarity=0.081 Sum_probs=66.4
Q ss_pred EEecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHH
Q 024287 101 VICGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178 (269)
Q Consensus 101 ~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~ 178 (269)
..+....|.+-+.+-++.. .++.+.|=.+..+. +-+++..|+..|. ++++..+||+.++.-|
T Consensus 122 ~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDV----------clEl~~Rlk~aF~-~~~I~~Lyg~S~~~fr----- 185 (441)
T COG4098 122 WAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDV----------CLELYPRLKQAFS-NCDIDLLYGDSDSYFR----- 185 (441)
T ss_pred EEecCCCchhhhHHHHHHHHhcCCeEEEecCcccc----------hHHHHHHHHHhhc-cCCeeeEecCCchhcc-----
Confidence 3344445555555555432 46788888888886 5558888888776 4789999999875543
Q ss_pred HHhcCCccEEEEecc-ccccCCCCCCCeEEE--ec-CCCCccccccccccCCCC
Q 024287 179 EVRQGGGYLLVSTDI-AARGIDLPETTHIYN--FD-LPRSAIDYLHRAGRTGRK 228 (269)
Q Consensus 179 ~f~~~~~~iLv~T~~-~~~Gidi~~~~~Vi~--~~-~p~~~~~~~qr~GR~gR~ 228 (269)
-.++|||.. +-+-- ...+++|. .| +|.+.....|-+-+-+|-
T Consensus 186 ------~plvVaTtHQLlrFk--~aFD~liIDEVDAFP~~~d~~L~~Av~~ark 231 (441)
T COG4098 186 ------APLVVATTHQLLRFK--QAFDLLIIDEVDAFPFSDDQSLQYAVKKARK 231 (441)
T ss_pred ------ccEEEEehHHHHHHH--hhccEEEEeccccccccCCHHHHHHHHHhhc
Confidence 356677654 32221 13344442 33 688888888888777675
No 385
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=37.32 E-value=86 Score=28.37 Aligned_cols=60 Identities=15% Similarity=0.047 Sum_probs=37.5
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD 192 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~ 192 (269)
+-.++|.|+||+-|... ...++.|-+.. .+..+..+-|+.+... -.+.... ..++||+|+
T Consensus 154 ~~~vlIi~PTRELA~Q~-------~~eak~Ll~~h-~~~~v~~viGG~~~~~---e~~kl~k-~~niliATP 213 (543)
T KOG0342|consen 154 GTGVLIICPTRELAMQI-------FAEAKELLKYH-ESITVGIVIGGNNFSV---EADKLVK-GCNILIATP 213 (543)
T ss_pred CeeEEEecccHHHHHHH-------HHHHHHHHhhC-CCcceEEEeCCccchH---HHHHhhc-cccEEEeCC
Confidence 44789999999987773 22333333332 2467777878765332 2233333 678999997
No 386
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=37.22 E-value=58 Score=30.01 Aligned_cols=57 Identities=14% Similarity=0.035 Sum_probs=36.8
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEec
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD 192 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~ 192 (269)
+-.+||..+||+-|.. +.+.|.+... ..+.++.+-||..-. .+.-+-...+|||||+
T Consensus 141 GlGalIISPTRELA~Q----------tFevL~kvgk~h~fSaGLiiGG~~~k-----~E~eRi~~mNILVCTP 198 (758)
T KOG0343|consen 141 GLGALIISPTRELALQ----------TFEVLNKVGKHHDFSAGLIIGGKDVK-----FELERISQMNILVCTP 198 (758)
T ss_pred CceeEEecchHHHHHH----------HHHHHHHHhhccccccceeecCchhH-----HHHHhhhcCCeEEech
Confidence 4579999999997555 4444443322 245678888886522 2222335789999998
No 387
>PRK09087 hypothetical protein; Validated
Probab=37.14 E-value=65 Score=25.83 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=24.1
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
+++++|++|.+ ... ...+..+++... ..+.++++.|.|.|+
T Consensus 89 ~~l~iDDi~~~-~~~--~~~lf~l~n~~~-~~g~~ilits~~~p~ 129 (226)
T PRK09087 89 GPVLIEDIDAG-GFD--ETGLFHLINSVR-QAGTSLLMTSRLWPS 129 (226)
T ss_pred CeEEEECCCCC-CCC--HHHHHHHHHHHH-hCCCeEEEECCCChH
Confidence 58999999965 222 245666666654 234555555544444
No 388
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=36.84 E-value=12 Score=34.99 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.6
Q ss_pred cEEEEeccccccCC
Q 024287 19 QVLVIDEVDFLFNS 32 (269)
Q Consensus 19 ~~lViDE~~~l~~~ 32 (269)
+++||||||.+++.
T Consensus 350 sIvIiDEAHNlidt 363 (821)
T KOG1133|consen 350 SIVIIDEAHNLIDT 363 (821)
T ss_pred cEEEEechhHHHHH
Confidence 58999999988743
No 389
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=36.73 E-value=80 Score=27.49 Aligned_cols=26 Identities=27% Similarity=0.581 Sum_probs=15.8
Q ss_pred ccEEEEeccccccCCchhhhHHHHHHh
Q 024287 18 VQVLVIDEVDFLFNSSKQVSSLKKLLA 44 (269)
Q Consensus 18 ~~~lViDE~~~l~~~~~~~~~i~~i~~ 44 (269)
.-+||+||+|.+.... ....+..+++
T Consensus 139 ~~viviDE~d~l~~~~-~~~~l~~l~~ 164 (394)
T PRK00411 139 VLIVALDDINYLFEKE-GNDVLYSLLR 164 (394)
T ss_pred EEEEEECCHhHhhccC-CchHHHHHHH
Confidence 3589999999876221 2244455544
No 390
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=36.65 E-value=89 Score=20.27 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=24.4
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCc-eEEecccCC
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSD-VLLLEEEMN 169 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-v~~~h~~~~ 169 (269)
+..++++||.+-..+ ......|... ++. +..+.|++.
T Consensus 55 ~~~~iv~~c~~g~~a----------~~~~~~l~~~---G~~~v~~l~GG~~ 92 (100)
T smart00450 55 KDKPVVVYCRSGNRS----------AKAAWLLREL---GFKNVYLLDGGYK 92 (100)
T ss_pred CCCeEEEEeCCCcHH----------HHHHHHHHHc---CCCceEEecCCHH
Confidence 457899999775543 3456666655 333 778888875
No 391
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=36.59 E-value=39 Score=32.64 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=22.8
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhc
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYS 47 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~ 47 (269)
.-.++++||+|.++........+..+++..+
T Consensus 629 ~~~~i~iDEa~~ll~~~~~~~~i~~~~r~~R 659 (785)
T TIGR00929 629 RPFLIIIDEAWQYLGNPVFAAKIRDWLKTLR 659 (785)
T ss_pred CCeEEEEechhhhcCCHHHHHHHHHHHHHHH
Confidence 3468999999988876555667777777664
No 392
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=36.59 E-value=60 Score=24.87 Aligned_cols=44 Identities=11% Similarity=0.305 Sum_probs=29.3
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
+.+-+++++||...-++.. ....+.+.+..+.. .+.++++.|--
T Consensus 114 ~~~p~llilDEp~~~LD~~-~~~~i~~~L~~~~~-~g~tiIiiSH~ 157 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPT-NRRRVSDMIKEMAK-HTSQFIVITLK 157 (178)
T ss_pred CCCCCEEEEECCCCCCCHH-HHHHHHHHHHHHHh-CCCEEEEEECC
Confidence 3567899999999777766 33556566665532 34677777653
No 393
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=36.34 E-value=39 Score=28.80 Aligned_cols=38 Identities=21% Similarity=0.488 Sum_probs=24.5
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
.++++|+||||.|-... + .++.++.+.+. .+..+.+.+
T Consensus 131 ~fKlvILDEADaMT~~A-Q-nALRRviek~t--~n~rF~ii~ 168 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRDA-Q-NALRRVIEKYT--ANTRFATIS 168 (360)
T ss_pred ceeEEEecchhHhhHHH-H-HHHHHHHHHhc--cceEEEEec
Confidence 68899999999765443 3 45556666653 455555433
No 394
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=36.13 E-value=44 Score=29.13 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=24.4
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
+++|||||+.|- ...++.++... +....+++++
T Consensus 353 ~FiIIDEaQNLT-----pheikTiltR~--G~GsKIVl~g 385 (436)
T COG1875 353 SFIIIDEAQNLT-----PHELKTILTRA--GEGSKIVLTG 385 (436)
T ss_pred ceEEEehhhccC-----HHHHHHHHHhc--cCCCEEEEcC
Confidence 489999999762 45677777665 4777888776
No 395
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=35.89 E-value=1.3e+02 Score=29.13 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=42.0
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhh--hcCCCCceEEecccCChhHHHHHHHHHh-cCCccEEEEecccc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSN--SYKGSSDVLLLEEEMNFNSRAASLLEVR-QGGGYLLVSTDIAA 195 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~v~~~h~~~~~~~r~~~~~~f~-~~~~~iLv~T~~~~ 195 (269)
.++|.+|.|+- ..+..+..+ .+.+++.+..+||+ +++|....+.+. .|...|+|+|--.+
T Consensus 216 ~~GPfLVi~P~--------------StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsYEi~ 278 (971)
T KOG0385|consen 216 IPGPFLVIAPK--------------STLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSYEIA 278 (971)
T ss_pred CCCCeEEEeeH--------------hhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehHHHH
Confidence 47899999984 334444322 23356899999998 578888777765 46788888886543
No 396
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=35.84 E-value=48 Score=26.18 Aligned_cols=40 Identities=33% Similarity=0.400 Sum_probs=26.9
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
.++++||.+.-+..... ..+.+++..... .+.|+++.|-.
T Consensus 259 ~illiDEpE~~LHp~~q-~~l~~~l~~~~~-~~~QviitTHS 298 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQ-RKLIELLKELSK-KNIQVIITTHS 298 (303)
T ss_dssp SEEEEESSSTTSSHHHH-HHHHHHHHHTGG-GSSEEEEEES-
T ss_pred eEEEecCCcCCCCHHHH-HHHHHHHHhhCc-cCCEEEEeCcc
Confidence 88999999987776644 444455555431 47899887754
No 397
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=35.66 E-value=47 Score=28.57 Aligned_cols=13 Identities=38% Similarity=0.892 Sum_probs=10.9
Q ss_pred ccEEEEecccccc
Q 024287 18 VQVLVIDEVDFLF 30 (269)
Q Consensus 18 ~~~lViDE~~~l~ 30 (269)
--++|+||+|.+.
T Consensus 130 ~~vlvIDE~d~L~ 142 (365)
T TIGR02928 130 SLIIVLDEIDYLV 142 (365)
T ss_pred eEEEEECchhhhc
Confidence 4589999999886
No 398
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.60 E-value=39 Score=33.16 Aligned_cols=47 Identities=15% Similarity=0.317 Sum_probs=34.1
Q ss_pred hhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 4 LCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 4 l~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
|+++|.-++-. +-|+||+|..++.+ +-..|-.++.. ...+.|+|.+|
T Consensus 1096 IlamL~fkPAP-----lYILDEVDAALDLS-HTQNIG~mIkt--hF~~sQFIVVS 1142 (1174)
T KOG0933|consen 1096 ILAMLKFKPAP-----LYILDEVDAALDLS-HTQNIGRMIKT--HFTHSQFIVVS 1142 (1174)
T ss_pred HHHHHcCCCCc-----eeehhhhHHhhcch-hhhhHHHHHHh--hCCCCeEEEEE
Confidence 46666666655 89999999888776 43556565543 24789999998
No 399
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=35.43 E-value=27 Score=29.26 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=17.3
Q ss_pred CchhhHHHHhCceecCcccEEEEecccccc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLF 30 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~ 30 (269)
||-|..+|. +|+.=+++.|||+|++.
T Consensus 91 ~gDlaaiLt----~Le~~DVLFIDEIHrl~ 116 (332)
T COG2255 91 PGDLAAILT----NLEEGDVLFIDEIHRLS 116 (332)
T ss_pred hhhHHHHHh----cCCcCCeEEEehhhhcC
Confidence 444555544 35555699999999864
No 400
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=35.30 E-value=35 Score=29.05 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=25.9
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
...+++|||++|.|-... ...+.+.+++- +.+..++++|..
T Consensus 112 g~~kV~iI~~ae~m~~~A--aNaLLKtLEEP--p~~~~fiL~~~~ 152 (319)
T PRK08769 112 GIAQVVIVDPADAINRAA--CNALLKTLEEP--SPGRYLWLISAQ 152 (319)
T ss_pred CCcEEEEeccHhhhCHHH--HHHHHHHhhCC--CCCCeEEEEECC
Confidence 456899999999874433 34556666652 245556666543
No 401
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=35.20 E-value=63 Score=30.02 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=12.9
Q ss_pred cCcccEEEEecccccc
Q 024287 15 LESVQVLVIDEVDFLF 30 (269)
Q Consensus 15 l~~~~~lViDE~~~l~ 30 (269)
....+++||||+|.|.
T Consensus 117 ~~~~KVvIIDEa~~Ls 132 (563)
T PRK06647 117 SSRYRVYIIDEVHMLS 132 (563)
T ss_pred cCCCEEEEEEChhhcC
Confidence 3677899999999663
No 402
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=34.42 E-value=39 Score=27.56 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=31.9
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHH
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFL 68 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l 68 (269)
..-+.+|+||||.|- .|.+ +++.+-++.+. ...++.+...+-..-++.+
T Consensus 112 grhKIiILDEADSMT-~gAQ-QAlRRtMEiyS--~ttRFalaCN~s~KIiEPI 160 (333)
T KOG0991|consen 112 GRHKIIILDEADSMT-AGAQ-QALRRTMEIYS--NTTRFALACNQSEKIIEPI 160 (333)
T ss_pred CceeEEEeeccchhh-hHHH-HHHHHHHHHHc--ccchhhhhhcchhhhhhhH
Confidence 556799999999765 4434 67777777664 5666666665544444433
No 403
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=34.36 E-value=57 Score=30.02 Aligned_cols=48 Identities=15% Similarity=0.256 Sum_probs=28.3
Q ss_pred cCcccEEEEeccccccCCchhhh-----HHHHHHhhhc--cCCCccEEEEeccCC
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVS-----SLKKLLASYS--SCNNRQTVFASASIP 62 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~-----~i~~i~~~~~--~~~~~q~i~~SATl~ 62 (269)
=|.++++|+|++.+|+++..-.+ .+..++-.++ ++..++.+.++.|-.
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~ 650 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSR 650 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccH
Confidence 36678999999999999852222 2223322222 234456666666533
No 404
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=34.31 E-value=79 Score=25.00 Aligned_cols=76 Identities=16% Similarity=0.067 Sum_probs=46.8
Q ss_pred cchHHHHHHHHhh-cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCC
Q 024287 106 KMKYQTLLSLIQS-DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGG 184 (269)
Q Consensus 106 ~~k~~~l~~ll~~-~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~ 184 (269)
...-+.|.+.+.. ..++++++.+.... ...+.+.|++....-..+.+|.. .+........+.+..+.
T Consensus 101 ~~~s~~L~~~l~~~~~~~~vl~~~g~~~-----------~~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~ 168 (231)
T PF02602_consen 101 EGSSEGLAELLKEQLRGKRVLILRGEGG-----------RPDLPEKLREAGIEVTEVIVYET-PPEELSPELKEALDRGE 168 (231)
T ss_dssp SSSHHHHHGGHHHCCTTEEEEEEESSSS-----------CHHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhhCCCCeEEEEcCCCc-----------cHHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHHHHcCC
Confidence 3444566666664 34456666666543 45678888766222123444555 55667778888888888
Q ss_pred ccEEEEecc
Q 024287 185 GYLLVSTDI 193 (269)
Q Consensus 185 ~~iLv~T~~ 193 (269)
..+++-|+.
T Consensus 169 ~~~v~ftS~ 177 (231)
T PF02602_consen 169 IDAVVFTSP 177 (231)
T ss_dssp TSEEEESSH
T ss_pred CCEEEECCH
Confidence 777766664
No 405
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=34.17 E-value=2.3e+02 Score=22.20 Aligned_cols=76 Identities=14% Similarity=0.039 Sum_probs=34.7
Q ss_pred CcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhc
Q 024287 105 KKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQ 182 (269)
Q Consensus 105 ~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~ 182 (269)
.....+.|.+++... .+.++++.+.... ...+.+.|.+....-..+..|.-.-.... ....+.+..
T Consensus 104 ~~~~~~~L~~~i~~~~~~~~~il~~~g~~~-----------~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~-~~~~~~l~~ 171 (239)
T cd06578 104 EEGDSEGLLELLELQDGKGKRILRPRGGRA-----------REDLAEALRERGAEVDEVEVYRTVPPDLD-AELLELLEE 171 (239)
T ss_pred CccCHHHHHHHHHhcCCCCCEEEEEcCcch-----------hHHHHHHHHHCCCEEEEEEEEEEECCCCc-HHHHHHHHc
Confidence 334455666666664 4445555554432 24566777665221112222322211111 233455555
Q ss_pred CCccEEEEec
Q 024287 183 GGGYLLVSTD 192 (269)
Q Consensus 183 ~~~~iLv~T~ 192 (269)
+...+++-|+
T Consensus 172 ~~~~~iiftS 181 (239)
T cd06578 172 GAIDAVLFTS 181 (239)
T ss_pred CCCcEEEEeC
Confidence 5554555554
No 406
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=34.14 E-value=43 Score=31.80 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=27.4
Q ss_pred CchhhHHHHh-CceecCcccEEEEeccccccCCchhhhHHHHHHhhh
Q 024287 1 MGSLCQLIEK-HIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASY 46 (269)
Q Consensus 1 pgrl~~~l~~-~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~ 46 (269)
|||+..-++. |..+ =++++||+|+|..+- .+..-.++++-+
T Consensus 404 PGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~-rGDPaSALLEVL 445 (782)
T COG0466 404 PGKIIQGMKKAGVKN----PVFLLDEIDKMGSSF-RGDPASALLEVL 445 (782)
T ss_pred ChHHHHHHHHhCCcC----CeEEeechhhccCCC-CCChHHHHHhhc
Confidence 8999888876 2222 289999999987653 444445555444
No 407
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=34.09 E-value=1.5e+02 Score=26.07 Aligned_cols=51 Identities=10% Similarity=-0.160 Sum_probs=40.5
Q ss_pred hHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecccc
Q 024287 144 TTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAA 195 (269)
Q Consensus 144 ~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~ 195 (269)
.....+.|++.......+...||-++ ...+.+.+.|.+|.+.-+++|+...
T Consensus 280 l~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi~ 330 (382)
T PRK06827 280 MIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLVY 330 (382)
T ss_pred HHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCCc
Confidence 45677888887776777889999988 6666777778888888899999864
No 408
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=34.02 E-value=74 Score=21.36 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=28.0
Q ss_pred HHHHHHHhhhcCCCCc----eEEecccCChhHHHHHHHHHhcCCccEEEEeccc
Q 024287 145 TLLVDFLSNSYKGSSD----VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA 194 (269)
Q Consensus 145 ~~~~~~l~~~~~~~~~----v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~ 194 (269)
...+++|++. +++ +...+.+-.+.-+..+++.+++|++..+|+|..-
T Consensus 20 ~gTa~~L~~~---Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~ 70 (95)
T PF02142_consen 20 EGTAKFLKEH---GIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYP 70 (95)
T ss_dssp HHHHHHHHHT---T--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--T
T ss_pred hHHHHHHHHc---CCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCC
Confidence 4467888876 565 2233333233334479999999999988887653
No 409
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=33.80 E-value=14 Score=36.96 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCcc-EEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEec
Q 024287 174 AASLLEVRQGGGY-LLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSII 241 (269)
Q Consensus 174 ~~~~~~f~~~~~~-iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~ 241 (269)
..-...|++ ++ .++-+...+.|+|+-++.+|+..++-.++..-.|-+||+-|.|+. +.-.++.|+
T Consensus 1258 ~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~-~pT~V~~fi 1323 (1394)
T KOG0298|consen 1258 DDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQK-RPTFVHRFI 1323 (1394)
T ss_pred hhhhhhccc--ceEEEEEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccc-cchhhhhhh
Confidence 344555654 44 457788889999999999999999989999999999999999965 333344443
No 410
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=33.58 E-value=1.5e+02 Score=19.84 Aligned_cols=38 Identities=8% Similarity=0.068 Sum_probs=22.9
Q ss_pred cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC-ceEEecccCC
Q 024287 119 DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMN 169 (269)
Q Consensus 119 ~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~v~~~h~~~~ 169 (269)
.+..+++|||.+=.. ....+..|... ++ .+..+.|++.
T Consensus 59 ~~~~~ivvyC~~G~r----------s~~a~~~L~~~---G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIR----------CEKASAYLKER---GFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchh----------HHHHHHHHHHh---CCcceeeechhHH
Confidence 345679999987432 22344556555 44 3667778764
No 411
>PRK06921 hypothetical protein; Provisional
Probab=32.88 E-value=71 Score=26.37 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=26.6
Q ss_pred ecCcccEEEEecccc-ccC----CchhhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 14 KLESVQVLVIDEVDF-LFN----SSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 14 ~l~~~~~lViDE~~~-l~~----~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
.+.++++|||||+|. +-. ..+....+..+++... ..+.++ ++|+.+++
T Consensus 174 ~~~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~-~~~k~t-Iitsn~~~ 226 (266)
T PRK06921 174 RMKKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRY-LNHKPI-LISSELTI 226 (266)
T ss_pred HhcCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHH-HCCCCE-EEECCCCH
Confidence 456789999999963 111 1122345666666543 123455 44555544
No 412
>PRK04841 transcriptional regulator MalT; Provisional
Probab=32.76 E-value=64 Score=31.59 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=29.2
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
-++|+|++|.+ +.......+..++...+ .+..+++.|-+.|+
T Consensus 123 ~~lvlDD~h~~-~~~~~~~~l~~l~~~~~--~~~~lv~~sR~~~~ 164 (903)
T PRK04841 123 LYLVIDDYHLI-TNPEIHEAMRFFLRHQP--ENLTLVVLSRNLPP 164 (903)
T ss_pred EEEEEeCcCcC-CChHHHHHHHHHHHhCC--CCeEEEEEeCCCCC
Confidence 48999999965 44434456777777654 67788788877554
No 413
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=32.71 E-value=1.3e+02 Score=18.84 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=23.0
Q ss_pred CceEEecccCChhHHHHHHHHHhcCCccEEEEecccccc
Q 024287 159 SDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARG 197 (269)
Q Consensus 159 ~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~G 197 (269)
..+....|.....+....++.+... ..|++++|.-..|
T Consensus 23 ~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G 60 (76)
T smart00493 23 GNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREG 60 (76)
T ss_pred EEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhH
Confidence 3455555655444555555555443 5699999876655
No 414
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=32.66 E-value=42 Score=28.68 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=23.3
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
.+.-+++||||+|.|-... ...+.+.+++- +.+.-+++.|
T Consensus 104 ~~~~kv~iI~~a~~m~~~a--aNaLLK~LEEP--p~~~~fiL~t 143 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRNA--ANALLKSLEEP--SGDTVLLLIS 143 (328)
T ss_pred cCCCeEEEECChhhCCHHH--HHHHHHHHhCC--CCCeEEEEEE
Confidence 3456799999999775433 34555555552 2344444444
No 415
>PTZ00293 thymidine kinase; Provisional
Probab=32.59 E-value=64 Score=25.68 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=12.0
Q ss_pred CcccEEEEeccccc
Q 024287 16 ESVQVLVIDEVDFL 29 (269)
Q Consensus 16 ~~~~~lViDE~~~l 29 (269)
+++++|.|||++.+
T Consensus 76 ~~~dvI~IDEaQFf 89 (211)
T PTZ00293 76 KNYDVIAIDEGQFF 89 (211)
T ss_pred cCCCEEEEEchHhh
Confidence 67899999999953
No 416
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.31 E-value=45 Score=31.35 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=17.5
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhh
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLAS 45 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~ 45 (269)
...+++||||+|.|-... ...+.+.++.
T Consensus 120 ~~~KViIIDEad~Lt~~a--~naLLK~LEe 147 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAA--FNALLKTLEE 147 (620)
T ss_pred CCceEEEEECccccCHHH--HHHHHHHHhc
Confidence 456899999999764322 2444455543
No 417
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.27 E-value=4.4e+02 Score=24.96 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=19.8
Q ss_pred HHHHHHHh--cCCccEEEEeccccccCCCC
Q 024287 174 AASLLEVR--QGGGYLLVSTDIAARGIDLP 201 (269)
Q Consensus 174 ~~~~~~f~--~~~~~iLv~T~~~~~Gidi~ 201 (269)
...++.+. +..+|++.+.|.+.+|-|+-
T Consensus 318 ~lllnsled~dnpir~if~vd~lnegwdvl 347 (812)
T COG3421 318 MLLLNSLEDRDNPIRVIFSVDKLNEGWDVL 347 (812)
T ss_pred HHHHhhhhhcCCCeEEEEEeecccccchhh
Confidence 33444443 34589999999999998853
No 418
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=32.15 E-value=2.7e+02 Score=22.46 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=57.0
Q ss_pred CCCceEEEeeccch--hhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhc---CCccEEEEeccc
Q 024287 120 APESGIIFVGEQSE--KSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQ---GGGYLLVSTDIA 194 (269)
Q Consensus 120 ~~~~~lIF~~s~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~---~~~~iLv~T~~~ 194 (269)
+.+.+||+.|+.-. ........+++..+.+.+++. ++.| ..+.+++..+-.+.+++|.+ ....++++. .+
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~l---gF~V-~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~ 82 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESL---GYEV-EVKNNLTAEEILEELKEFASPDHSDSDSFVCV-IL 82 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHC---CCEE-EEeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-EC
Confidence 45678888886421 111112223467788888887 6766 56788888888888888874 234444444 45
Q ss_pred cccCCCCCCCeEEEec-CCCCccccccccc
Q 024287 195 ARGIDLPETTHIYNFD-LPRSAIDYLHRAG 223 (269)
Q Consensus 195 ~~Gidi~~~~~Vi~~~-~p~~~~~~~qr~G 223 (269)
+-|.. +.++-.| .+.+..+..+.+.
T Consensus 83 sHG~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 83 SHGEE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred CCCCC----CEEEEecCcEEEHHHHHHhhc
Confidence 56654 5666555 4444555555443
No 419
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=32.12 E-value=1.2e+02 Score=25.66 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=24.5
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEec
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASA 59 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SA 59 (269)
+..+++|||++|.|-... ...+.+.++.- ++..++++|.
T Consensus 123 ~~~kVvII~~ae~m~~~a--aNaLLK~LEEP---p~~~fILi~~ 161 (314)
T PRK07399 123 APRKVVVIEDAETMNEAA--ANALLKTLEEP---GNGTLILIAP 161 (314)
T ss_pred CCceEEEEEchhhcCHHH--HHHHHHHHhCC---CCCeEEEEEC
Confidence 567899999999774333 34566666552 3454555553
No 420
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=31.91 E-value=1.6e+02 Score=30.93 Aligned_cols=84 Identities=10% Similarity=-0.042 Sum_probs=47.0
Q ss_pred CCceEEEeeccchhhhhcCCCCc-hHHHHHHHhhh--cCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc----
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPS-TTLLVDFLSNS--YKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI---- 193 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~-~~~~~~~l~~~--~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~---- 193 (269)
+.++|+.++++.-+..+..+++. ...+....... ...++.+...||+.+..+|.+.++ ....|||+|.-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~----~ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR----NPPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc----CCCCEEEecHHHHHH
Confidence 35789999988765443211100 00000000000 012477899999999988865433 45689999984
Q ss_pred -cc-cc-CCCCCCCeEEE
Q 024287 194 -AA-RG-IDLPETTHIYN 208 (269)
Q Consensus 194 -~~-~G-idi~~~~~Vi~ 208 (269)
+. ++ ..+.++++||.
T Consensus 113 LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 113 MLTSRARETLRGVETVII 130 (1490)
T ss_pred HHhhhhhhhhccCCEEEE
Confidence 22 22 24678888773
No 421
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.90 E-value=70 Score=29.83 Aligned_cols=16 Identities=44% Similarity=0.617 Sum_probs=12.8
Q ss_pred cCcccEEEEecccccc
Q 024287 15 LESVQVLVIDEVDFLF 30 (269)
Q Consensus 15 l~~~~~lViDE~~~l~ 30 (269)
....+++||||+|.|-
T Consensus 118 ~~~~kVvIIDEa~~L~ 133 (585)
T PRK14950 118 LARYKVYIIDEVHMLS 133 (585)
T ss_pred cCCeEEEEEeChHhCC
Confidence 3567899999999664
No 422
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=31.75 E-value=1.1e+02 Score=25.61 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=24.0
Q ss_pred cEEEEeccccccCC----chhhhHHHHHHhhhccCCCccEEEEeccCCch
Q 024287 19 QVLVIDEVDFLFNS----SKQVSSLKKLLASYSSCNNRQTVFASASIPQH 64 (269)
Q Consensus 19 ~~lViDE~~~l~~~----~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~ 64 (269)
.++++||+|.+... .........++..+. .....++++.||-++.
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le-~~~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NQRDDLVVILAGYKDR 171 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHh-cCCCCEEEEEeCCcHH
Confidence 68999999976422 112223344444442 2334555666665553
No 423
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.61 E-value=61 Score=30.43 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=24.8
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
..+..+++||||+|.|... ....+.+.++.. +..-++++.+|
T Consensus 118 ~~~~~KVvIIdea~~Ls~~--a~naLLK~LEep---p~~tifIL~tt 159 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQA--AFNAFLKTLEEP---PSYAIFILATT 159 (614)
T ss_pred ccCCcEEEEEECcccCCHH--HHHHHHHHHhCC---CCCeEEEEEeC
Confidence 3456789999999976432 234555566543 23334444444
No 424
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=31.32 E-value=1.2e+02 Score=21.63 Aligned_cols=11 Identities=36% Similarity=0.510 Sum_probs=5.0
Q ss_pred hhHHHHHHhhh
Q 024287 36 VSSLKKLLASY 46 (269)
Q Consensus 36 ~~~i~~i~~~~ 46 (269)
++.+.++++.+
T Consensus 51 R~~~~~ll~~~ 61 (137)
T cd00338 51 RPGLQRLLADV 61 (137)
T ss_pred CHHHHHHHHHH
Confidence 34444444444
No 425
>PRK08939 primosomal protein DnaI; Reviewed
Probab=31.21 E-value=63 Score=27.34 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=25.8
Q ss_pred ecCcccEEEEeccccccCCchhhhHH-HHHHhhhccCCCccEEEEecc
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSL-KKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i-~~i~~~~~~~~~~q~i~~SAT 60 (269)
.++++++||+||+..-....+.+..+ ..|++.-. ....++++.|--
T Consensus 214 ~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~-~~~~~ti~TSNl 260 (306)
T PRK08939 214 AVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRM-QEELPTFFTSNF 260 (306)
T ss_pred HhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHH-HCCCeEEEECCC
Confidence 47889999999998432222333333 44544321 145566666643
No 426
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=31.04 E-value=73 Score=26.76 Aligned_cols=51 Identities=24% Similarity=0.377 Sum_probs=38.1
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHH
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHN 70 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~ 70 (269)
+.++++|+-|+|.+-.+. + ..+.+-++++. .+.++++...+.++.++.+.+
T Consensus 126 r~fKvvvi~ead~LT~dA-Q-~aLRRTMEkYs--~~~RlIl~cns~SriIepIrS 176 (351)
T KOG2035|consen 126 RPFKVVVINEADELTRDA-Q-HALRRTMEKYS--SNCRLILVCNSTSRIIEPIRS 176 (351)
T ss_pred cceEEEEEechHhhhHHH-H-HHHHHHHHHHh--cCceEEEEecCcccchhHHhh
Confidence 467899999999876554 3 56667777775 788999988887777665553
No 427
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=31.02 E-value=43 Score=28.06 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=22.3
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhh
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASY 46 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~ 46 (269)
....+++++||++.|...+ +..+..+..+.
T Consensus 163 ~~~~~~iivDEA~~L~~~a--le~lr~i~d~~ 192 (297)
T COG2842 163 RDTVRLIIVDEADRLPYRA--LEELRRIHDKT 192 (297)
T ss_pred ccCcceeeeehhhccChHH--HHHHHHHHHhh
Confidence 5677899999999886555 46677777653
No 428
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=30.54 E-value=75 Score=30.26 Aligned_cols=40 Identities=15% Similarity=0.362 Sum_probs=26.1
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccC
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl 61 (269)
.+.+++|+|||..+-. +.+.+++..+.. .+.+++++|.+-
T Consensus 293 ~~~DLLIVDEAAfI~~-----~~l~aIlP~l~~-~~~k~IiISS~~ 332 (752)
T PHA03333 293 QNPDLVIVDEAAFVNP-----GALLSVLPLMAV-KGTKQIHISSPV 332 (752)
T ss_pred CCCCEEEEECcccCCH-----HHHHHHHHHHcc-CCCceEEEeCCC
Confidence 3568999999995532 455566665543 456667777654
No 429
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=30.43 E-value=84 Score=24.62 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=30.6
Q ss_pred cCcccEEEEeccccccCCchhhh-HHHHHHhhhccCCCccEEEEecc
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVS-SLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~-~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
..+-+++++||.-.-++.. ... .+..++..+......++++.|-.
T Consensus 137 ~~~p~illlDEP~~~LD~~-~~~~~l~~~l~~~~~~~~~~iiiitH~ 182 (204)
T cd03240 137 GSNCGILALDEPTTNLDEE-NIEESLAEIIEERKSQKNFQLIVITHD 182 (204)
T ss_pred ccCCCEEEEcCCccccCHH-HHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 4577899999999777665 345 67777776642225677777653
No 430
>PRK10869 recombination and repair protein; Provisional
Probab=30.36 E-value=71 Score=29.59 Aligned_cols=84 Identities=21% Similarity=0.214 Sum_probs=48.2
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCCCcc
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCL 96 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (269)
+..++|+||.+.-++.. ....+...+..+. ...|+++.|-- |.. .... + ..+.+.... ....-
T Consensus 452 ~~~~li~DEpd~gld~~-~~~~v~~~l~~l~--~~~qvi~iTH~-~~~-~~~a----------d-~~~~v~k~~-~~~~t 514 (553)
T PRK10869 452 ETPALIFDEVDVGISGP-TAAVVGKLLRQLG--ESTQVMCVTHL-PQV-AGCG----------H-QHFFVSKET-DGGMT 514 (553)
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHHHHHHh--cCCEEEEEecC-HHH-HHhC----------C-EEEEEeccc-cCCee
Confidence 56899999999665543 5567777777764 45787777753 321 1111 1 112222111 11123
Q ss_pred eeEEEEecCcchHHHHHHHHh
Q 024287 97 HHRFVICGKKMKYQTLLSLIQ 117 (269)
Q Consensus 97 ~~~~~~~~~~~k~~~l~~ll~ 117 (269)
...+...+.+.+...+.+++.
T Consensus 515 ~s~i~~L~~~~R~~EiARMl~ 535 (553)
T PRK10869 515 ETHMQPLDKKARLQELARLLG 535 (553)
T ss_pred eEEEEECChhHHHHHHHHHhC
Confidence 344445577788888888884
No 431
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.23 E-value=87 Score=28.64 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=12.3
Q ss_pred cCcccEEEEeccccc
Q 024287 15 LESVQVLVIDEVDFL 29 (269)
Q Consensus 15 l~~~~~lViDE~~~l 29 (269)
....+++||||+|.+
T Consensus 114 ~~~~kVVIIDEad~l 128 (504)
T PRK14963 114 RGGRKVYILDEAHMM 128 (504)
T ss_pred cCCCeEEEEECcccc
Confidence 356789999999965
No 432
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=30.16 E-value=7.9e+02 Score=27.17 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=27.5
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
.+..-++|||||+-+ ++ ...+..++.... ..+.++|+++=+
T Consensus 526 ~l~~~~vlIVDEAsM-l~----~~~~~~Ll~~a~-~~garvVlvGD~ 566 (1960)
T TIGR02760 526 PFSNKDIFVVDEANK-LS----NNELLKLIDKAE-QHNSKLILLNDS 566 (1960)
T ss_pred CCCCCCEEEEECCCC-CC----HHHHHHHHHHHh-hcCCEEEEEcCh
Confidence 356778999999994 43 244455555432 367899998765
No 433
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=29.83 E-value=92 Score=20.81 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=25.0
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCC
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMN 169 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~ 169 (269)
+..+++++|.+-.. ....+..|+.. ++.+..+.|++.
T Consensus 60 ~~~~ivv~C~~G~r----------s~~aa~~L~~~---G~~~~~l~GG~~ 96 (100)
T cd01523 60 DDQEVTVICAKEGS----------SQFVAELLAER---GYDVDYLAGGMK 96 (100)
T ss_pred CCCeEEEEcCCCCc----------HHHHHHHHHHc---CceeEEeCCcHH
Confidence 34689999987443 33466667665 566777888875
No 434
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=29.73 E-value=1.3e+02 Score=22.58 Aligned_cols=86 Identities=7% Similarity=0.085 Sum_probs=52.6
Q ss_pred EEEecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHH
Q 024287 100 FVICGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASL 177 (269)
Q Consensus 100 ~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~ 177 (269)
++......+...+.+++++. .+.+++|.|++.++ +..+.+.|...-+.+ . .=|+......
T Consensus 6 FYhL~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~----------~~~LD~~LWtf~~~S--F-lPH~~~~~~~----- 67 (154)
T PRK06646 6 IYQTSDELLLKSILLLIEKCYYSDLKSVILTADADQ----------QEMLNKNLWTYSRKQ--F-IPHGSKLDPQ----- 67 (154)
T ss_pred EEEeCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHH----------HHHHHHHhcCCCCCC--C-CCCCCCCCCC-----
Confidence 44456777888999999754 57899999988775 455888887653222 2 2333322110
Q ss_pred HHHhcCCccEEEEeccccccCCCCCCCeEEEecC
Q 024287 178 LEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDL 211 (269)
Q Consensus 178 ~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~ 211 (269)
.....|+++++.- +. +..++.||.+.
T Consensus 68 ----~a~~PV~L~~~~~--~p--~~~~vLiNL~~ 93 (154)
T PRK06646 68 ----PEKQPIYITDELQ--NP--NNASVLVIISP 93 (154)
T ss_pred ----CCCCCEEEecCCC--CC--CCCCEEEECCC
Confidence 1245688875432 22 25677888764
No 435
>PRK10865 protein disaggregation chaperone; Provisional
Probab=29.59 E-value=52 Score=32.32 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=25.0
Q ss_pred cEEEEeccccccCCch--hhhHHHHHHhhhccCCCccEEEEeccCCch
Q 024287 19 QVLVIDEVDFLFNSSK--QVSSLKKLLASYSSCNNRQTVFASASIPQH 64 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~--~~~~i~~i~~~~~~~~~~q~i~~SATl~~~ 64 (269)
.+++|||+|.+...+. .......++.-.. ....+.++.||-++.
T Consensus 273 ~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e 318 (857)
T PRK10865 273 VILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDE 318 (857)
T ss_pred eEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHH
Confidence 4899999998875431 1112223332221 345677777776655
No 436
>PHA02533 17 large terminase protein; Provisional
Probab=29.20 E-value=82 Score=29.04 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=23.4
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
+.+++++||+|.+.+.. .....+...+..+...+++++|+.
T Consensus 169 ~~~~liiDE~a~~~~~~---e~~~ai~p~lasg~~~r~iiiSTp 209 (534)
T PHA02533 169 SFAMIYIDECAFIPNFI---DFWLAIQPVISSGRSSKIIITSTP 209 (534)
T ss_pred CCceEEEeccccCCCHH---HHHHHHHHHHHcCCCceEEEEECC
Confidence 45689999999654322 233334444433344567677754
No 437
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=29.19 E-value=41 Score=29.18 Aligned_cols=45 Identities=18% Similarity=0.399 Sum_probs=28.3
Q ss_pred eecCcccEEEEeccccccCCchhhhHHHHHHhhhcc-------CCCccEEEEec
Q 024287 13 FKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSS-------CNNRQTVFASA 59 (269)
Q Consensus 13 ~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~-------~~~~q~i~~SA 59 (269)
-.+++++++|+||+- |+... ....+...++.+.. ....++++++-
T Consensus 98 ~~l~~~~~lIiDEis-m~~~~-~l~~i~~~lr~i~~~~~~~~pFGG~~vil~GD 149 (364)
T PF05970_consen 98 ERLRKADVLIIDEIS-MVSAD-MLDAIDRRLRDIRKSKDSDKPFGGKQVILFGD 149 (364)
T ss_pred hhhhhheeeeccccc-chhHH-HHHHHHHhhhhhhcccchhhhcCcceEEeehh
Confidence 467888999999998 44333 34566666655442 23466666553
No 438
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=29.17 E-value=70 Score=28.07 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=39.6
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD 192 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~ 192 (269)
.+.-.+|.|+|++-|....+. .......|++.....+....--|+++-.+...+++ .| +.|+|+|+
T Consensus 245 EGP~gLiicPSRELArQt~~i---ie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~---~G-vHivVATP 310 (610)
T KOG0341|consen 245 EGPYGLIICPSRELARQTHDI---IEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVR---RG-VHIVVATP 310 (610)
T ss_pred CCCeeEEEcCcHHHHHHHHHH---HHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHh---cC-eeEEEcCc
Confidence 455689999999977663221 12233444444323344555668888777655544 34 45888886
No 439
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=29.14 E-value=44 Score=32.92 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=24.8
Q ss_pred ccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 18 VQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 18 ~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
-.++|+||+|.++........+.+..+..+ +.-..++.||
T Consensus 734 ~~~~viDEaw~l~~~~~~a~fi~~~~k~~R---K~g~~~~~aT 773 (893)
T TIGR03744 734 PIVMVTDEGHIITTNPLLAPYVVKITKMWR---KLGAWFWLAT 773 (893)
T ss_pred eEEEEeehHhhhhcCHHHHHHHHHHHHHHH---hcCcEEEEEe
Confidence 457999999987654444566666666654 3333444455
No 440
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=29.13 E-value=79 Score=29.33 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=49.5
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCCCcc
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCL 96 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (269)
..+++|+||.+.-++.. ....+..++..+. .+.|++++|-- +.... .. .....+.-. . ....-
T Consensus 462 ~~~~lilDEp~~gld~~-~~~~~~~~l~~l~--~~~~vi~iTH~-~~~~~-~a---------d~~~~l~k~--~-~~~~t 524 (563)
T TIGR00634 462 AVTTLIFDEVDVGVSGE-TAQAIAKKLAQLS--ERHQVLCVTHL-PQVAA-HA---------DAHFKVEKE--G-LDGRT 524 (563)
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHHHHHHh--cCCEEEEEECh-HHHHH-hc---------CeEEEEEEc--c-CCCcE
Confidence 46899999999666554 5577777777765 46788887754 22111 10 111222211 1 11223
Q ss_pred eeEEEEecCcchHHHHHHHHh
Q 024287 97 HHRFVICGKKMKYQTLLSLIQ 117 (269)
Q Consensus 97 ~~~~~~~~~~~k~~~l~~ll~ 117 (269)
...+...+.+++...+.+++.
T Consensus 525 ~s~i~~L~~~~r~~EiArml~ 545 (563)
T TIGR00634 525 ATRVRPLSGEERVAELARMLA 545 (563)
T ss_pred EEEEEECCccHHHHHHHHHhC
Confidence 445555677889989988884
No 441
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=28.73 E-value=62 Score=31.25 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=26.5
Q ss_pred ccEEEEeccccccCCch---hhhHHHHHHhhhccCCCccEEEEeccCCch
Q 024287 18 VQVLVIDEVDFLFNSSK---QVSSLKKLLASYSSCNNRQTVFASASIPQH 64 (269)
Q Consensus 18 ~~~lViDE~~~l~~~~~---~~~~i~~i~~~~~~~~~~q~i~~SATl~~~ 64 (269)
-.+++|||+|.+...+. .-..+..++..+. ...++.+++||-++.
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~~E 326 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQE 326 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCChHH
Confidence 35999999998875542 1123333444332 345677777776554
No 442
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=28.52 E-value=96 Score=24.18 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=30.3
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccC-CCccEEEEeccCC
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSC-NNRQTVFASASIP 62 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~-~~~q~i~~SATl~ 62 (269)
+.+-+++++||...-++.. ....+.+++..+... ...+++++|+--.
T Consensus 129 ~~~p~illlDEP~~glD~~-~~~~~~~~l~~~~~~~~~~~~iii~th~~ 176 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMV-NRKISTDLLVKEAKKQPGRQFIFITPQDI 176 (198)
T ss_pred ccCCCEEEecCcccccCHH-HHHHHHHHHHHHHhcCCCcEEEEEECCcc
Confidence 4678899999999777666 345566655554322 2456777775433
No 443
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=28.51 E-value=81 Score=29.42 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=29.6
Q ss_pred HHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhh
Q 024287 8 IEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASY 46 (269)
Q Consensus 8 l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~ 46 (269)
|.-|++=|.+=++|.|||+|+|.+.. +-+|-+++++.
T Consensus 389 LEAGAMVLADRGVVCIDEFDKMsDiD--RvAIHEVMEQq 425 (818)
T KOG0479|consen 389 LEAGAMVLADRGVVCIDEFDKMSDID--RVAIHEVMEQQ 425 (818)
T ss_pred hhcCceEEccCceEEehhcccccchh--HHHHHHHHhcc
Confidence 45678888899999999999998766 56777777653
No 444
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=28.50 E-value=1.2e+02 Score=21.29 Aligned_cols=38 Identities=8% Similarity=-0.067 Sum_probs=25.3
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC--ceEEecccCCh
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS--DVLLLEEEMNF 170 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~v~~~h~~~~~ 170 (269)
...++++||++-.. .......|... ++ .+..+.|++..
T Consensus 71 ~~~~ivv~C~~G~r----------s~~aa~~L~~~---G~~~~v~~l~GG~~~ 110 (122)
T cd01526 71 KDSPIYVVCRRGND----------SQTAVRKLKEL---GLERFVRDIIGGLKA 110 (122)
T ss_pred CCCcEEEECCCCCc----------HHHHHHHHHHc---CCccceeeecchHHH
Confidence 34689999987543 23355667666 44 57888999843
No 445
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=28.47 E-value=91 Score=30.26 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=17.6
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccC
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFN 31 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~ 31 (269)
||++...+..-. ..-.++++||+|.+..
T Consensus 401 ~g~i~~~l~~~~---~~~~villDEidk~~~ 428 (775)
T TIGR00763 401 PGRIIQGLKKAK---TKNPLFLLDEIDKIGS 428 (775)
T ss_pred CchHHHHHHHhC---cCCCEEEEechhhcCC
Confidence 566665554321 1123899999998865
No 446
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=28.33 E-value=2.5e+02 Score=22.44 Aligned_cols=74 Identities=8% Similarity=-0.095 Sum_probs=37.3
Q ss_pred hHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCc
Q 024287 108 KYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGG 185 (269)
Q Consensus 108 k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~ 185 (269)
.-+.|.+++... .++++++++.... ...+.+.|.+....-..+..|.-...........+.+.++.+
T Consensus 103 ~~e~L~~~~~~~~~~~~~vL~~rg~~~-----------r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~ 171 (240)
T PRK09189 103 DGVRLAETVAAALAPTARLLYLAGRPR-----------APVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPF 171 (240)
T ss_pred CHHHHHHHHHHhcCCCCcEEEeccCcc-----------cchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCC
Confidence 344555555432 4466777766543 345777777662211123334332223333455666777766
Q ss_pred cEEEEec
Q 024287 186 YLLVSTD 192 (269)
Q Consensus 186 ~iLv~T~ 192 (269)
.+++-|+
T Consensus 172 d~i~f~S 178 (240)
T PRK09189 172 DAVLLYS 178 (240)
T ss_pred CEEEEeC
Confidence 6555444
No 447
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=28.18 E-value=1.4e+02 Score=26.88 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=42.4
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc-----cc
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI-----AA 195 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~~ 195 (269)
+...+|.++|++-|..+. .+.+.|.+.+...+.+.-+.++|+..+... .-.+...|+|+|+. ++
T Consensus 93 ~~sa~iLvPTkEL~qQvy-------~viekL~~~c~k~lr~~nl~s~~sdsv~~~----~L~d~pdIvV~TP~~ll~~~~ 161 (569)
T KOG0346|consen 93 GPSAVILVPTKELAQQVY-------KVIEKLVEYCSKDLRAINLASSMSDSVNSV----ALMDLPDIVVATPAKLLRHLA 161 (569)
T ss_pred cceeEEEechHHHHHHHH-------HHHHHHHHHHHHhhhhhhhhcccchHHHHH----HHccCCCeEEeChHHHHHHHh
Confidence 457899999999877632 233333333332345556777888766543 33467889999985 45
Q ss_pred ccC
Q 024287 196 RGI 198 (269)
Q Consensus 196 ~Gi 198 (269)
.|+
T Consensus 162 ~~~ 164 (569)
T KOG0346|consen 162 AGV 164 (569)
T ss_pred hcc
Confidence 565
No 448
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=27.97 E-value=2.5e+02 Score=22.77 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=34.8
Q ss_pred HHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCC
Q 024287 147 LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDL 200 (269)
Q Consensus 147 ~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi 200 (269)
+...|.+.+.-++++.+ |.++..+--++++... .-++++.+|+...-.|+
T Consensus 170 v~~vld~e~~vGlTvqP--gKlt~~eAveIV~ey~--~~r~ilnSD~~s~~sd~ 219 (254)
T COG1099 170 VDEVLDEEFYVGLTVQP--GKLTVEEAVEIVREYG--AERIILNSDAGSAASDP 219 (254)
T ss_pred HHHHHhccceEEEEecC--CcCCHHHHHHHHHHhC--cceEEEecccccccccc
Confidence 34455555544555655 8999988888888876 56788888876655553
No 449
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=27.93 E-value=61 Score=27.68 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=23.2
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
.+.-+++||||+|.|-... ...+.+.++.- +....+++.+
T Consensus 108 ~~~~kvviI~~a~~~~~~a--~NaLLK~LEEP--p~~~~~Il~t 147 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA--ANSLLKFLEEP--SGGTTAILLT 147 (329)
T ss_pred ccCceEEEeehHhhhCHHH--HHHHHHHhcCC--CCCceEEEEe
Confidence 3566899999999764333 24555555542 2344444433
No 450
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=27.83 E-value=59 Score=27.48 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=19.5
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEE
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFA 57 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~ 57 (269)
.++.|||+| |++.. ...-+.+.+++ +-.+++.|
T Consensus 298 GVLFIDEVh-MLDiE-cFTyL~kalES----~iaPivif 330 (456)
T KOG1942|consen 298 GVLFIDEVH-MLDIE-CFTYLHKALES----PIAPIVIF 330 (456)
T ss_pred cceEeeehh-hhhhH-HHHHHHHHhcC----CCCceEEE
Confidence 588999999 66655 22334444432 44555555
No 451
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=27.67 E-value=62 Score=27.19 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=26.4
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
+..+++|||++|.|-... ...+.+.+++- +.+.-++++|..
T Consensus 94 ~~~kv~ii~~ad~mt~~A--aNaLLK~LEEP--p~~~~fiL~~~~ 134 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDA--ISAFLKVLEDP--PQHGVIILTSAK 134 (290)
T ss_pred CCceEEEEechhhcCHHH--HHHHHHHhhcC--CCCeEEEEEeCC
Confidence 456899999999775433 35666677662 345555555544
No 452
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=27.67 E-value=80 Score=24.96 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=15.8
Q ss_pred EEEeccccccCCCCCCCeEEEec
Q 024287 188 LVSTDIAARGIDLPETTHIYNFD 210 (269)
Q Consensus 188 Lv~T~~~~~Gidi~~~~~Vi~~~ 210 (269)
-+.|-.-..|..++.+.++..-+
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~ 206 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSD 206 (234)
T ss_pred ceechHHcceEEeCCEEEEECCC
Confidence 46666778898888876655433
No 453
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=27.64 E-value=44 Score=31.12 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=17.6
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHh
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLA 44 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~ 44 (269)
=..+.++||||++....+. ...+..+..
T Consensus 526 ~~~~kh~vIDeaqdys~~q--~~~~r~l~~ 553 (747)
T COG3973 526 ERRLKHTVIDEAQDYSRFQ--FTDNRTLAE 553 (747)
T ss_pred cccccceeechhhhcchhh--hHHHhhhhh
Confidence 3467899999999665433 344444443
No 454
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=27.62 E-value=1.2e+02 Score=25.25 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=29.2
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
.+.++++||-+-+.......+..+.++++... +..-++.+|||...
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~--~~~~~LVl~a~~~~ 198 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVE--PDYICLTLSASMKS 198 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhC--CCeEEEEEcCccCH
Confidence 36789999999876544444555555555432 23335568998654
No 455
>PHA03371 circ protein; Provisional
Probab=27.50 E-value=97 Score=24.84 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=24.3
Q ss_pred ccccCCCCCCCeE-EEecCCC-------------CccccccccccCCCCC
Q 024287 194 AARGIDLPETTHI-YNFDLPR-------------SAIDYLHRAGRTGRKP 229 (269)
Q Consensus 194 ~~~Gidi~~~~~V-i~~~~p~-------------~~~~~~qr~GR~gR~~ 229 (269)
.++-||+|+=+-+ |..|.+. +--.|+|.+|||--.|
T Consensus 30 aGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g 79 (240)
T PHA03371 30 AGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIG 79 (240)
T ss_pred cCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccC
Confidence 4566788877665 5444332 5567789999987776
No 456
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=27.31 E-value=79 Score=24.00 Aligned_cols=29 Identities=31% Similarity=0.349 Sum_probs=16.4
Q ss_pred CcccEEEEeccccccCCc-hhhhHHHHHHh
Q 024287 16 ESVQVLVIDEVDFLFNSS-KQVSSLKKLLA 44 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~-~~~~~i~~i~~ 44 (269)
++-+++|+||+-.|--.+ .+.+.+..++.
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 466799999999764333 34466666664
No 457
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=27.09 E-value=62 Score=30.97 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=17.6
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhh
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLAS 45 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~ 45 (269)
+..+++||||+|.|-. + ....+...++.
T Consensus 117 g~~KV~IIDEa~~LT~-~-A~NALLKtLEE 144 (725)
T PRK07133 117 SKYKIYIIDEVHMLSK-S-AFNALLKTLEE 144 (725)
T ss_pred CCCEEEEEEChhhCCH-H-HHHHHHHHhhc
Confidence 5667999999996542 2 23444455544
No 458
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=27.01 E-value=2.1e+02 Score=26.19 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=41.9
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec-----ccc
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD-----IAA 195 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~-----~~~ 195 (269)
+.++||.+++++-|..+ ......+.+.. ++.+..+.|+.+..+.. ..++. ...|+|+|. .+.
T Consensus 196 ~~~aLIL~PTreLa~Qi-------~~~~~~l~~~~--~~~~~~~~gG~~~~~q~---~~l~~-~~~IiV~TPgrL~~~l~ 262 (518)
T PLN00206 196 NPLAMVLTPTRELCVQV-------EDQAKVLGKGL--PFKTALVVGGDAMPQQL---YRIQQ-GVELIVGTPGRLIDLLS 262 (518)
T ss_pred CceEEEEeCCHHHHHHH-------HHHHHHHhCCC--CceEEEEECCcchHHHH---HHhcC-CCCEEEECHHHHHHHHH
Confidence 45799999998865542 22222332221 34556666766544432 23333 367999995 333
Q ss_pred -ccCCCCCCCeEE
Q 024287 196 -RGIDLPETTHIY 207 (269)
Q Consensus 196 -~Gidi~~~~~Vi 207 (269)
.++++..+.++|
T Consensus 263 ~~~~~l~~v~~lV 275 (518)
T PLN00206 263 KHDIELDNVSVLV 275 (518)
T ss_pred cCCccchheeEEE
Confidence 356677777665
No 459
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=26.92 E-value=2.9e+02 Score=27.27 Aligned_cols=95 Identities=15% Similarity=0.214 Sum_probs=60.1
Q ss_pred chHHHHHHHHhhcC--CCceE---EEeeccchhhhhcCCCCchHHHHHHHhhhcC--CCCceEEecccCChhHHHHHHHH
Q 024287 107 MKYQTLLSLIQSDA--PESGI---IFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK--GSSDVLLLEEEMNFNSRAASLLE 179 (269)
Q Consensus 107 ~k~~~l~~ll~~~~--~~~~l---IF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~v~~~h~~~~~~~r~~~~~~ 179 (269)
.|+.++..+|++++ .++++ |-++++.......+....+..++..+...|. +..++..+|..++..++...+..
T Consensus 356 ~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ 435 (854)
T PLN02205 356 LKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVV 435 (854)
T ss_pred HHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHh
Confidence 47778888887764 24443 4467776544433323334556666666654 23368888899998887665543
Q ss_pred HhcCCccEEEEeccccccCCCCCCCeEE
Q 024287 180 VRQGGGYLLVSTDIAARGIDLPETTHIY 207 (269)
Q Consensus 180 f~~~~~~iLv~T~~~~~Gidi~~~~~Vi 207 (269)
-.|++.|++ --|+|+-.-.+|.
T Consensus 436 -----ADv~lVT~l-RDGMNLva~Eyia 457 (854)
T PLN02205 436 -----AECCLVTAV-RDGMNLIPYEYII 457 (854)
T ss_pred -----ccEEEeccc-cccccccchheeE
Confidence 458888885 4489987767765
No 460
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.89 E-value=1e+02 Score=22.71 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=26.3
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
.+-+++++||.-.=++.. ....+.+++..+.. .+..+++.|
T Consensus 97 ~~~~i~ilDEp~~~lD~~-~~~~l~~~l~~~~~-~~~tii~~s 137 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPA-SRERLLELLRELAE-EGRTVIIVT 137 (157)
T ss_pred cCCCEEEEeCCCcCCCHH-HHHHHHHHHHHHHH-CCCEEEEEe
Confidence 346899999998766655 45677777766642 234444444
No 461
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=26.79 E-value=1.4e+02 Score=27.04 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=40.4
Q ss_pred CceEEEeeccchhhhhcCCCCchHHHHHHHhhh-cCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec-----ccc
Q 024287 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS-YKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD-----IAA 195 (269)
Q Consensus 122 ~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~-----~~~ 195 (269)
++.+|..+|++-|.. +++.-.+. +..+..+...+|+.+- +. -..+......|+|||. .++
T Consensus 153 P~~lIlapTReL~~Q----------i~nea~k~~~~s~~~~~~~ygg~~~--~~--q~~~~~~gcdIlvaTpGrL~d~~e 218 (482)
T KOG0335|consen 153 PRALILAPTRELVDQ----------IYNEARKFSYLSGMKSVVVYGGTDL--GA--QLRFIKRGCDILVATPGRLKDLIE 218 (482)
T ss_pred CceEEEeCcHHHhhH----------HHHHHHhhcccccceeeeeeCCcch--hh--hhhhhccCccEEEecCchhhhhhh
Confidence 679999999986544 22222211 1124556667777332 22 2233445688999996 344
Q ss_pred cc-CCCCCCCeEE
Q 024287 196 RG-IDLPETTHIY 207 (269)
Q Consensus 196 ~G-idi~~~~~Vi 207 (269)
+| |.++++.+++
T Consensus 219 ~g~i~l~~~k~~v 231 (482)
T KOG0335|consen 219 RGKISLDNCKFLV 231 (482)
T ss_pred cceeehhhCcEEE
Confidence 44 5555555444
No 462
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=26.46 E-value=1.6e+02 Score=20.14 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=13.3
Q ss_pred ccEEEEeccccccCCc
Q 024287 18 VQVLVIDEVDFLFNSS 33 (269)
Q Consensus 18 ~~~lViDE~~~l~~~~ 33 (269)
..++++||++.+....
T Consensus 79 ~~viiiDei~~~~~~~ 94 (148)
T smart00382 79 PDVLILDEITSLLDAE 94 (148)
T ss_pred CCEEEEECCcccCCHH
Confidence 5899999999876655
No 463
>PRK13767 ATP-dependent helicase; Provisional
Probab=26.43 E-value=1.7e+02 Score=29.01 Aligned_cols=67 Identities=9% Similarity=-0.008 Sum_probs=38.4
Q ss_pred CceEEEeeccchhhhhcCCCCc-hHHHHHHHhhhcC--CCCceEEecccCChhHHHHHHHHHhcCCccEEEEec
Q 024287 122 ESGIIFVGEQSEKSKKAGNAPS-TTLLVDFLSNSYK--GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD 192 (269)
Q Consensus 122 ~~~lIF~~s~~~~~~~~~~~~~-~~~~~~~l~~~~~--~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~ 192 (269)
.++|+.++++.-+..+...+.. ...+.+....... .++.+...||+.+..++...++ ....|+|+|+
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~----~~p~IlVtTP 154 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK----KPPHILITTP 154 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh----CCCCEEEecH
Confidence 4689999998865543211110 0011111111101 1467889999999888765443 3567999997
No 464
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=26.38 E-value=82 Score=25.81 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=22.1
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhc
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS 47 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~ 47 (269)
+++++++|+||.-...........+..++....
T Consensus 165 l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~ 197 (254)
T COG1484 165 LKKVDLLIIDDIGYEPFSQEEADLLFQLISRRY 197 (254)
T ss_pred hhcCCEEEEecccCccCCHHHHHHHHHHHHHHH
Confidence 889999999999854433334455566555543
No 465
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=26.24 E-value=1.1e+02 Score=22.82 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=23.2
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
.-+++++||.-.-++... ...+...+..+.. .+.++++.|
T Consensus 99 ~~~llllDEp~~gld~~~-~~~l~~~l~~~~~-~~~~vii~T 138 (162)
T cd03227 99 PRPLYILDEIDRGLDPRD-GQALAEAILEHLV-KGAQVIVIT 138 (162)
T ss_pred CCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHh-cCCEEEEEc
Confidence 567999999987666653 3445454444432 234444433
No 466
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=26.20 E-value=90 Score=31.18 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=28.7
Q ss_pred CceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 11 HIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 11 ~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
+...+...++|||||+- |++. ..+..++.... ....++|+++=+
T Consensus 427 ~~~~l~~~~vlIVDEAS-Mv~~----~~m~~LL~~a~-~~garvVLVGD~ 470 (988)
T PRK13889 427 GRDLLTSRDVLVIDEAG-MVGT----RQLERVLSHAA-DAGAKVVLVGDP 470 (988)
T ss_pred cccccccCcEEEEECcc-cCCH----HHHHHHHHhhh-hCCCEEEEECCH
Confidence 34457778899999999 5432 33445554331 357889988765
No 467
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=26.11 E-value=98 Score=25.80 Aligned_cols=16 Identities=44% Similarity=0.455 Sum_probs=12.3
Q ss_pred CcccEEEEeccccccC
Q 024287 16 ESVQVLVIDEVDFLFN 31 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~ 31 (269)
..-.+++|||+|.+..
T Consensus 80 ~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 80 EEGDVLFIDEIHRLSP 95 (305)
T ss_pred ccCCEEEEehHhhhCH
Confidence 3456999999997653
No 468
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=25.89 E-value=83 Score=26.42 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=17.8
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhh
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLAS 45 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~ 45 (269)
+..+++|||++|.|-... ...+.+.+++
T Consensus 103 ~~~kV~II~~ad~m~~~A--aNaLLKtLEE 130 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNA--ANSLLKVIEE 130 (290)
T ss_pred CCcEEEEeehhhhcCHHH--HHHHHHHhcC
Confidence 445799999999875433 3445555554
No 469
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=25.82 E-value=1e+02 Score=25.01 Aligned_cols=14 Identities=36% Similarity=0.434 Sum_probs=10.9
Q ss_pred cccEEEEecccccc
Q 024287 17 SVQVLVIDEVDFLF 30 (269)
Q Consensus 17 ~~~~lViDE~~~l~ 30 (269)
...++|+||+|.+.
T Consensus 123 ~~~vliiDe~~~l~ 136 (269)
T TIGR03015 123 KRALLVVDEAQNLT 136 (269)
T ss_pred CCeEEEEECcccCC
Confidence 44599999999753
No 470
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=25.58 E-value=91 Score=27.17 Aligned_cols=68 Identities=1% Similarity=-0.216 Sum_probs=42.9
Q ss_pred HHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHH
Q 024287 177 LLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFV 248 (269)
Q Consensus 177 ~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~ 248 (269)
+..+......+..|+.-...+.+-..+.-+.++-...++-...+++.|. +.+ ..|.-.+++++-|...
T Consensus 115 ~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~---~~~iKmfvlDEaDEmL 182 (397)
T KOG0327|consen 115 RALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLS---TDGIKMFVLDEADEML 182 (397)
T ss_pred HhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-ccc---ccceeEEeecchHhhh
Confidence 4445556677888887777776655555554454556666777777655 443 5667777777755544
No 471
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=25.48 E-value=1.2e+02 Score=26.17 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=23.2
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
...+++|||++|.|-... ...+.+.+++ ++.+.-++++|
T Consensus 131 ~~~kV~iI~~ae~m~~~A--aNaLLKtLEE--Pp~~t~fiL~t 169 (342)
T PRK06964 131 GGARVVVLYPAEALNVAA--ANALLKTLEE--PPPGTVFLLVS 169 (342)
T ss_pred CCceEEEEechhhcCHHH--HHHHHHHhcC--CCcCcEEEEEE
Confidence 456799999999874433 3455555554 12334444444
No 472
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=25.22 E-value=36 Score=32.10 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=14.4
Q ss_pred cCcccEEEEeccccccCC
Q 024287 15 LESVQVLVIDEVDFLFNS 32 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~ 32 (269)
+..-.++||||||++.+.
T Consensus 218 ~p~~~v~v~DEAH~l~d~ 235 (654)
T COG1199 218 LPENDVVVFDEAHNLPDI 235 (654)
T ss_pred CCcccEEEEeccccchHH
Confidence 456779999999988754
No 473
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=25.13 E-value=1.1e+02 Score=29.68 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=26.8
Q ss_pred ceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 12 IFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 12 ~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
.-.+...++|||||+- |++.. .+..++.... ....++|+++=+
T Consensus 434 ~~~~~~~~llIvDEas-Mv~~~----~~~~Ll~~~~-~~~~kliLVGD~ 476 (744)
T TIGR02768 434 RDLLSDKDVLVIDEAG-MVGSR----QMARVLKEAE-EAGAKVVLVGDP 476 (744)
T ss_pred cccCCCCcEEEEECcc-cCCHH----HHHHHHHHHH-hcCCEEEEECCh
Confidence 3456788999999998 54433 3344444321 256788888743
No 474
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=24.90 E-value=68 Score=31.49 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=25.2
Q ss_pred ccEEEEeccccccCCchh--hhHHHHHHhhhccCCCccEEEEeccCCch
Q 024287 18 VQVLVIDEVDFLFNSSKQ--VSSLKKLLASYSSCNNRQTVFASASIPQH 64 (269)
Q Consensus 18 ~~~lViDE~~~l~~~~~~--~~~i~~i~~~~~~~~~~q~i~~SATl~~~ 64 (269)
-.+++|||+|.+...|.. ......++.-.. ....+.++.||-+++
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e 313 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDE 313 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHH
Confidence 459999999988753311 112223333222 345566777775554
No 475
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=24.89 E-value=1.6e+02 Score=19.64 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=33.8
Q ss_pred CceEEecccCChhHHHHHHHHHhc----CCccEEEEeccccccCCCCCC----CeEEEec
Q 024287 159 SDVLLLEEEMNFNSRAASLLEVRQ----GGGYLLVSTDIAARGIDLPET----THIYNFD 210 (269)
Q Consensus 159 ~~v~~~h~~~~~~~r~~~~~~f~~----~~~~iLv~T~~~~~Gidi~~~----~~Vi~~~ 210 (269)
.....|-|.++...|+.+++...+ |.. +++-++.-+.|.++... ..++++|
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a-~m~~~~~neqG~~~~t~G~~~r~~vD~D 82 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSA-VMVWSDNNEQGFDFRTLGDPRREPVDFD 82 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccE-EEEEccCCCCCEEEEEeCCCCCcEEecC
Confidence 456778899999999999988765 333 34444444888876432 3355554
No 476
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.85 E-value=90 Score=26.96 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=12.5
Q ss_pred cCcccEEEEecccccc
Q 024287 15 LESVQVLVIDEVDFLF 30 (269)
Q Consensus 15 l~~~~~lViDE~~~l~ 30 (269)
..+.+++++||+|.+.
T Consensus 106 ~~~~kiviIDE~~~l~ 121 (367)
T PRK14970 106 TGKYKIYIIDEVHMLS 121 (367)
T ss_pred cCCcEEEEEeChhhcC
Confidence 3566799999999663
No 477
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=24.75 E-value=1.3e+02 Score=23.48 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=28.1
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
+.-+++++||...-++.. ....+..++..+. .+.++++.|--
T Consensus 134 ~~~~illlDEP~~~LD~~-~~~~l~~~l~~~~--~~~tiIiitH~ 175 (197)
T cd03278 134 RPSPFCVLDEVDAALDDA-NVERFARLLKEFS--KETQFIVITHR 175 (197)
T ss_pred CCCCEEEEeCCcccCCHH-HHHHHHHHHHHhc--cCCEEEEEECC
Confidence 445799999998766655 4466777777664 34666666543
No 478
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=24.34 E-value=69 Score=28.81 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=17.2
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhh
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLAS 45 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~ 45 (269)
..-+++||||+|.+.... ...+.+.++.
T Consensus 120 ~~~kvvIIdead~lt~~~--~n~LLk~lEe 147 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA--FNSLLKTLEE 147 (451)
T ss_pred CCCEEEEEecHHhhCHHH--HHHHHHHhhc
Confidence 466799999999764322 2344444443
No 479
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=24.30 E-value=1.5e+02 Score=28.96 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=19.6
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCC
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNS 32 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~ 32 (269)
||++...+..... .=.++++||+|++...
T Consensus 403 ~G~~~~~l~~~~~---~~~villDEidk~~~~ 431 (784)
T PRK10787 403 PGKLIQKMAKVGV---KNPLFLLDEIDKMSSD 431 (784)
T ss_pred CcHHHHHHHhcCC---CCCEEEEEChhhcccc
Confidence 6777776665331 1147999999988654
No 480
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=24.24 E-value=70 Score=27.44 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=24.6
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEec
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASA 59 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SA 59 (269)
.+..+++|||++|.|-... ...+.+.+++ ++.+.-++++|.
T Consensus 106 ~g~~kV~iI~~ae~m~~~A--aNaLLKtLEE--Pp~~t~fiL~t~ 146 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDAA--ANALLKTLEE--PPENTWFFLACR 146 (334)
T ss_pred cCCceEEEEcchHhhCHHH--HHHHHHHhcC--CCCCeEEEEEEC
Confidence 4567899999999875433 3455555555 234444444443
No 481
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=23.83 E-value=1.1e+02 Score=24.05 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=27.5
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEec
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASA 59 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SA 59 (269)
+.+-+++++||.-.-++.. ....+.+++..+....+..+++.|-
T Consensus 144 ~~~p~llllDEPt~~LD~~-~~~~~~~~l~~~~~~~~~tii~vsh 187 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPL-LREEMLALVKQLCSERQRTLLMVTH 187 (213)
T ss_pred hcCCCEEEEcCCCccCCHH-HHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3456799999998777666 4466666666654222444555553
No 482
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=23.82 E-value=8.6e+02 Score=26.51 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=25.5
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
+..=++|||||+..+.. ..+..++.... ..+.++|++.-+
T Consensus 498 ~~~~~ilIVDEAg~lsa-----r~m~~Ll~~A~-~~~arvVllgd~ 537 (1747)
T PRK13709 498 FTPGSTLIVDQAEKLSL-----KETLTLLDGAA-RHNVQVLILDSG 537 (1747)
T ss_pred CCCCcEEEEECCCcCCH-----HHHHHHHHHHH-HhCCEEEEECCc
Confidence 44556999999996532 34444444332 366899988644
No 483
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=23.80 E-value=87 Score=30.78 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=23.7
Q ss_pred cEEEEeccccccCCchh--hhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 19 QVLVIDEVDFLFNSSKQ--VSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~--~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
-+++|||+|.+...|.. ......++.-.. ....+.++.||-++
T Consensus 282 ~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT~~ 326 (852)
T TIGR03345 282 IILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATTWA 326 (852)
T ss_pred eEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecCHH
Confidence 48899999988754311 111222332222 34567777777553
No 484
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=23.72 E-value=1.6e+02 Score=21.31 Aligned_cols=13 Identities=31% Similarity=0.268 Sum_probs=8.2
Q ss_pred hhhHHHHHHhhhc
Q 024287 35 QVSSLKKLLASYS 47 (269)
Q Consensus 35 ~~~~i~~i~~~~~ 47 (269)
.++.+.++++.+.
T Consensus 47 ~Rp~l~~ll~~i~ 59 (134)
T cd03769 47 KRKGLLKLLEDVL 59 (134)
T ss_pred CCHHHHHHHHHHH
Confidence 4566667666654
No 485
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=23.68 E-value=40 Score=28.16 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=28.4
Q ss_pred HHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCC
Q 024287 145 TLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPET 203 (269)
Q Consensus 145 ~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~ 203 (269)
..+...+-+.+..-+..+.+||++| +.+|+|..+--..=||+|..
T Consensus 205 ~~il~~il~~~~~~~~~GiVHGDlS--------------efNIlV~~dg~~~vIDwPQ~ 249 (304)
T COG0478 205 DEILDKILEEVRKAYRRGIVHGDLS--------------EFNILVTEDGDIVVIDWPQA 249 (304)
T ss_pred HHHHHHHHHHHHHHHHcCccccCCc--------------hheEEEecCCCEEEEeCccc
Confidence 3333333333333345678999997 57899999755556777765
No 486
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=23.56 E-value=1.6e+02 Score=19.77 Aligned_cols=44 Identities=7% Similarity=0.003 Sum_probs=30.7
Q ss_pred CceEEecccCChhHHHHHHHHHhcC---C-ccEEEEeccccccCCCCC
Q 024287 159 SDVLLLEEEMNFNSRAASLLEVRQG---G-GYLLVSTDIAARGIDLPE 202 (269)
Q Consensus 159 ~~v~~~h~~~~~~~r~~~~~~f~~~---~-~~iLv~T~~~~~Gidi~~ 202 (269)
...+.|-|+++...|+.+.+...+. + .-+++=++.-+.|.++..
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t 71 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFT 71 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEe
Confidence 4566788999999999988876653 1 225555555688877643
No 487
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=23.51 E-value=94 Score=26.50 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=24.2
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEec
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASA 59 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SA 59 (269)
.+..+++|||++|.|-... ...+.+.+++ ++.+.-+++.|.
T Consensus 106 ~~~~kV~iI~~ae~m~~~A--aNaLLKtLEE--Pp~~t~fiL~t~ 146 (319)
T PRK06090 106 LNGYRLFVIEPADAMNESA--SNALLKTLEE--PAPNCLFLLVTH 146 (319)
T ss_pred cCCceEEEecchhhhCHHH--HHHHHHHhcC--CCCCeEEEEEEC
Confidence 4567899999999875333 3455555655 223344444443
No 488
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=23.48 E-value=3.2e+02 Score=22.62 Aligned_cols=60 Identities=8% Similarity=0.080 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHH
Q 024287 110 QTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178 (269)
Q Consensus 110 ~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~ 178 (269)
..+...+....+.++-|.+.+..-|+.- ......++.-. ++.+..+.+++++.+|.+.+.
T Consensus 107 ~~l~a~~~AL~G~~V~vvT~NdyLA~RD------~~~~~~~y~~L---Glsv~~~~~~~~~~~r~~~Y~ 166 (266)
T PF07517_consen 107 AALPAALNALQGKGVHVVTSNDYLAKRD------AEEMRPFYEFL---GLSVGIITSDMSSEERREAYA 166 (266)
T ss_dssp HHHHHHHHHTTSS-EEEEESSHHHHHHH------HHHHHHHHHHT---T--EEEEETTTEHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEeccHHHhhcc------HHHHHHHHHHh---hhccccCccccCHHHHHHHHh
Confidence 3445555666788899999998877663 44444444444 789999999999888876654
No 489
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=23.43 E-value=1.6e+02 Score=19.62 Aligned_cols=38 Identities=8% Similarity=0.165 Sum_probs=23.9
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC-ceEEecccCCh
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS-DVLLLEEEMNF 170 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~v~~~h~~~~~ 170 (269)
+..++++||++-.. .......|.+. ++ .+..+.|++..
T Consensus 57 ~~~~vv~~c~~g~r----------s~~~~~~l~~~---G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGR----------SMQVAQWLLRQ---GFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCch----------HHHHHHHHHHc---CCccEEEecCCHHH
Confidence 35689999988443 23345556554 33 47778888753
No 490
>PLN02955 8-amino-7-oxononanoate synthase
Probab=23.36 E-value=66 Score=29.12 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=21.4
Q ss_pred EEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCch
Q 024287 20 VLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQH 64 (269)
Q Consensus 20 ~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~ 64 (269)
++|+||+|-..-.|....-+.+.+. ....+.++..|+.+.
T Consensus 281 ~LiVDEAH~~Gv~G~~G~G~~e~~g-----~~~di~ii~~TLsKA 320 (476)
T PLN02955 281 LLVIDDAHGTFVCGENGGGVAEEFN-----CEADVDLCVGTLSKA 320 (476)
T ss_pred EEEEcccccCceecCCCCcHHHHhC-----CCCCCcEEEEeCccc
Confidence 7888999875555532232223222 223455566666654
No 491
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=23.26 E-value=1.1e+02 Score=30.98 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=28.6
Q ss_pred CceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 11 HIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 11 ~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
+.-.+..-++|||||+- |++. ..+..++.... ....++++++=+
T Consensus 462 ~~~~l~~~~vlVIDEAs-Mv~~----~~m~~Ll~~~~-~~garvVLVGD~ 505 (1102)
T PRK13826 462 GRDQLDNKTVFVLDEAG-MVAS----RQMALFVEAVT-RAGAKLVLVGDP 505 (1102)
T ss_pred CccCCCCCcEEEEECcc-cCCH----HHHHHHHHHHH-hcCCEEEEECCH
Confidence 34456777899999999 5433 33444554442 256889988765
No 492
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=22.93 E-value=1.2e+02 Score=19.99 Aligned_cols=43 Identities=21% Similarity=0.154 Sum_probs=26.9
Q ss_pred HHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc
Q 024287 147 LVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI 193 (269)
Q Consensus 147 ~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 193 (269)
.+++|++. ++.+...+..... .+..+.+.+++|++..+|.|..
T Consensus 22 Ta~~L~~~---Gi~~~~~~~ki~~-~~~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 22 TAKFLREA---GLPVKTLHPKVHG-GILAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHHHC---CCcceeccCCCCC-CCHHHHHHhcCCCeEEEEECCC
Confidence 56677765 5555333333321 1245888899999998888764
No 493
>PRK09183 transposase/IS protein; Provisional
Probab=22.86 E-value=1.3e+02 Score=24.72 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=19.6
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhh
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASY 46 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~ 46 (269)
+...+++|+||++...........+..++...
T Consensus 162 ~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r 193 (259)
T PRK09183 162 VMAPRLLIIDEIGYLPFSQEEANLFFQVIAKR 193 (259)
T ss_pred hcCCCEEEEcccccCCCChHHHHHHHHHHHHH
Confidence 45678999999995432222334566666543
No 494
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=22.56 E-value=69 Score=28.02 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=24.3
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCch
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQH 64 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~ 64 (269)
-++.+||+|+.-... + .-++.. -.+.-+++.+||-.+.
T Consensus 224 TilFiDEiHRFNksQ-Q----D~fLP~---VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 224 TILFIDEIHRFNKSQ-Q----DTFLPH---VENGDITLIGATTENP 261 (554)
T ss_pred eEEEeHHhhhhhhhh-h----hcccce---eccCceEEEecccCCC
Confidence 378999999753322 1 122222 2567889999997665
No 495
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=22.41 E-value=1.3e+02 Score=24.22 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=29.6
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
.-+++++||.-.-++.. ....+.+++..+. ..+.++++.|--
T Consensus 177 ~p~~lllDEPt~~LD~~-~~~~l~~~i~~~~-~~g~~vi~isH~ 218 (247)
T cd03275 177 PAPFFVLDEVDAALDNT-NVGKVASYIREQA-GPNFQFIVISLK 218 (247)
T ss_pred CCCEEEEecccccCCHH-HHHHHHHHHHHhc-cCCcEEEEEECC
Confidence 45799999999777666 4466777777764 235677777753
No 496
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=22.32 E-value=1.7e+02 Score=21.17 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=9.0
Q ss_pred hhhHHHHHHhhhc
Q 024287 35 QVSSLKKLLASYS 47 (269)
Q Consensus 35 ~~~~i~~i~~~~~ 47 (269)
.++.+.++++.+.
T Consensus 50 ~Rp~l~~ll~~~~ 62 (148)
T smart00857 50 DRPGLQRLLADLR 62 (148)
T ss_pred CCHHHHHHHHHHH
Confidence 4677777777664
No 497
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=22.31 E-value=85 Score=26.86 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=23.4
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
+..+++|||++|.|-... ...+.+.+++ ++.+.-+++.|
T Consensus 106 g~~KV~iI~~a~~m~~~A--aNaLLKtLEE--Pp~~~~fiL~t 144 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAA--ANALLKTLEE--PRPNTYFLLQA 144 (325)
T ss_pred CCceEEEEechhhhCHHH--HHHHHHHhcC--CCCCeEEEEEE
Confidence 456799999999875433 3455666655 22344444443
No 498
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=22.23 E-value=2.7e+02 Score=19.12 Aligned_cols=50 Identities=6% Similarity=0.103 Sum_probs=37.7
Q ss_pred cchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEec
Q 024287 106 KMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLE 165 (269)
Q Consensus 106 ~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h 165 (269)
+.|...+.+++...+..+.|..-.|=+. -.+++..+.+.+++.+.+..++
T Consensus 49 ~~K~~~i~~i~~~fP~~kfiLIGDsgq~----------DpeiY~~ia~~~P~~i~ai~IR 98 (100)
T PF09949_consen 49 EHKRDNIERILRDFPERKFILIGDSGQH----------DPEIYAEIARRFPGRILAIYIR 98 (100)
T ss_pred hHHHHHHHHHHHHCCCCcEEEEeeCCCc----------CHHHHHHHHHHCCCCEEEEEEE
Confidence 4788999999999888888888887553 3567777888888766665554
No 499
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=22.21 E-value=1e+02 Score=29.70 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=23.5
Q ss_pred cEEEEeccccccCCch--hh-hHHHHHHhhhccCCCccEEEEeccCC
Q 024287 19 QVLVIDEVDFLFNSSK--QV-SSLKKLLASYSSCNNRQTVFASASIP 62 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~--~~-~~i~~i~~~~~~~~~~q~i~~SATl~ 62 (269)
.+++|||+|.+...+. .. .....++.-.. ....+.++.||-+
T Consensus 276 ~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l--~~g~i~~IgaTt~ 320 (731)
T TIGR02639 276 AILFIDEIHTIVGAGATSGGSMDASNLLKPAL--SSGKLRCIGSTTY 320 (731)
T ss_pred eEEEEecHHHHhccCCCCCccHHHHHHHHHHH--hCCCeEEEEecCH
Confidence 3899999998875431 10 12223332222 3456777777754
No 500
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=22.14 E-value=3.2e+02 Score=21.58 Aligned_cols=73 Identities=15% Similarity=0.059 Sum_probs=32.9
Q ss_pred HHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccE
Q 024287 110 QTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYL 187 (269)
Q Consensus 110 ~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~i 187 (269)
..+...+... .+.++++.+.... ...+.+.|.+....-..+..|.-.-...........+..+...+
T Consensus 112 ~~l~~~l~~~~~~~~~ili~~~~~~-----------~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~ 180 (249)
T PRK05928 112 SELLLELPELLLKGKRVLYLRGNGG-----------REVLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQSGEVDA 180 (249)
T ss_pred hHHHHhChhhhcCCCEEEEECCCCC-----------HHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHHhCCCCE
Confidence 3444444333 3455555555433 34577777766222122233332222122233344444556666
Q ss_pred EEEecc
Q 024287 188 LVSTDI 193 (269)
Q Consensus 188 Lv~T~~ 193 (269)
++-|+.
T Consensus 181 ivftS~ 186 (249)
T PRK05928 181 VIFTSP 186 (249)
T ss_pred EEECCH
Confidence 666653
Done!