Query 024287
Match_columns 269
No_of_seqs 119 out of 1681
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 05:38:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 8.8E-42 3E-46 299.5 22.2 242 1-265 187-429 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 3.5E-40 1.2E-44 287.3 20.7 243 1-267 163-406 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 4.1E-39 1.4E-43 281.1 19.1 242 1-264 159-403 (417)
4 3eiq_A Eukaryotic initiation f 100.0 2.4E-39 8.1E-44 282.2 17.0 243 1-267 167-410 (414)
5 1xti_A Probable ATP-dependent 100.0 4.1E-38 1.4E-42 272.4 23.3 243 1-266 136-380 (391)
6 1s2m_A Putative ATP-dependent 100.0 5E-38 1.7E-42 272.8 22.5 241 1-266 147-387 (400)
7 3fht_A ATP-dependent RNA helic 100.0 7.4E-38 2.5E-42 272.5 21.9 244 1-267 151-403 (412)
8 3pey_A ATP-dependent RNA helic 100.0 4.3E-37 1.5E-41 266.0 21.5 244 1-267 129-381 (395)
9 1hv8_A Putative ATP-dependent 100.0 1.1E-36 3.7E-41 261.1 22.7 236 1-265 131-366 (367)
10 3sqw_A ATP-dependent RNA helic 100.0 1.4E-36 4.8E-41 275.6 21.7 245 1-263 158-417 (579)
11 3i5x_A ATP-dependent RNA helic 100.0 1.1E-36 3.6E-41 275.7 19.1 245 1-263 209-468 (563)
12 3fmp_B ATP-dependent RNA helic 100.0 1.6E-38 5.4E-43 282.3 6.3 243 1-266 218-469 (479)
13 1fuu_A Yeast initiation factor 100.0 1.7E-38 5.8E-43 275.0 5.9 242 1-266 146-388 (394)
14 3fho_A ATP-dependent RNA helic 100.0 2.5E-36 8.7E-41 269.7 13.4 244 1-267 243-494 (508)
15 1oyw_A RECQ helicase, ATP-depe 100.0 3.7E-34 1.3E-38 256.0 20.2 229 1-253 123-352 (523)
16 2z0m_A 337AA long hypothetical 100.0 2.7E-34 9.3E-39 243.5 17.4 224 1-258 113-336 (337)
17 2v1x_A ATP-dependent DNA helic 100.0 1.4E-33 4.8E-38 255.0 18.4 224 4-252 153-382 (591)
18 2hjv_A ATP-dependent RNA helic 100.0 5E-32 1.7E-36 206.6 17.8 158 91-264 5-162 (163)
19 3oiy_A Reverse gyrase helicase 100.0 6.6E-33 2.2E-37 241.9 13.6 229 1-266 125-387 (414)
20 1fuk_A Eukaryotic initiation f 100.0 9.4E-32 3.2E-36 205.5 17.9 157 94-266 2-159 (165)
21 2rb4_A ATP-dependent RNA helic 100.0 5.2E-32 1.8E-36 208.9 15.9 160 92-267 4-170 (175)
22 1t5i_A C_terminal domain of A 100.0 5.4E-32 1.8E-36 208.1 14.3 158 93-266 3-161 (172)
23 3eaq_A Heat resistant RNA depe 100.0 1.2E-30 4.2E-35 207.2 16.6 157 95-267 5-161 (212)
24 2va8_A SSO2462, SKI2-type heli 100.0 2.8E-30 9.5E-35 239.6 21.5 225 1-245 129-409 (715)
25 3l9o_A ATP-dependent RNA helic 100.0 5.7E-31 2E-35 251.9 17.3 233 1-244 274-597 (1108)
26 2p6n_A ATP-dependent RNA helic 100.0 6.5E-31 2.2E-35 205.2 14.3 169 79-264 13-182 (191)
27 2xgj_A ATP-dependent RNA helic 100.0 2.7E-30 9.2E-35 245.3 21.0 243 1-252 176-508 (1010)
28 2zj8_A DNA helicase, putative 100.0 1.2E-30 3.9E-35 242.2 17.3 240 1-261 122-402 (720)
29 2jgn_A DBX, DDX3, ATP-dependen 100.0 6.8E-31 2.3E-35 204.2 13.2 161 89-265 13-174 (185)
30 2p6r_A Afuhel308 helicase; pro 100.0 1.5E-30 5.2E-35 240.8 16.4 223 1-246 122-390 (702)
31 3tbk_A RIG-I helicase domain; 100.0 5.7E-30 2E-34 230.7 19.6 131 107-252 371-515 (555)
32 1yks_A Genome polyprotein [con 100.0 1.1E-31 3.6E-36 235.4 6.4 217 1-263 75-321 (440)
33 3i32_A Heat resistant RNA depe 100.0 8.3E-30 2.8E-34 211.6 16.2 157 95-267 2-158 (300)
34 4a2p_A RIG-I, retinoic acid in 100.0 6.4E-30 2.2E-34 230.6 15.9 126 107-247 372-511 (556)
35 4ddu_A Reverse gyrase; topoiso 100.0 3.5E-30 1.2E-34 246.3 15.0 230 1-266 182-514 (1104)
36 1wp9_A ATP-dependent RNA helic 100.0 2.1E-29 7.1E-34 223.0 18.2 125 107-248 343-479 (494)
37 2ykg_A Probable ATP-dependent 100.0 7.2E-30 2.5E-34 236.3 15.5 132 106-252 379-524 (696)
38 4a4z_A Antiviral helicase SKI2 100.0 2.4E-29 8.2E-34 238.8 17.1 242 1-252 131-502 (997)
39 2whx_A Serine protease/ntpase/ 100.0 2.1E-30 7.1E-35 235.1 7.6 197 14-256 274-493 (618)
40 1gku_B Reverse gyrase, TOP-RG; 100.0 6.3E-30 2.2E-34 244.5 8.4 222 1-258 163-468 (1054)
41 2wv9_A Flavivirin protease NS2 100.0 7.6E-30 2.6E-34 232.9 8.4 210 1-256 308-548 (673)
42 2yjt_D ATP-dependent RNA helic 99.9 4.1E-31 1.4E-35 202.9 0.0 157 94-266 2-159 (170)
43 4a2q_A RIG-I, retinoic acid in 100.0 1.3E-28 4.5E-33 230.6 15.1 126 107-247 613-752 (797)
44 1tf5_A Preprotein translocase 100.0 9.2E-30 3.1E-34 232.2 6.0 129 100-246 409-547 (844)
45 4f92_B U5 small nuclear ribonu 100.0 6.8E-28 2.3E-32 238.1 18.9 241 1-252 1028-1316(1724)
46 4f92_B U5 small nuclear ribonu 100.0 4.3E-28 1.5E-32 239.6 15.6 234 1-251 189-480 (1724)
47 2xau_A PRE-mRNA-splicing facto 100.0 1.3E-28 4.5E-33 228.4 10.1 217 1-246 193-445 (773)
48 4a2w_A RIG-I, retinoic acid in 100.0 7.1E-28 2.4E-32 228.4 15.2 126 107-247 613-752 (936)
49 3o8b_A HCV NS3 protease/helica 100.0 1.2E-28 4.1E-33 222.5 9.1 209 1-264 305-538 (666)
50 2jlq_A Serine protease subunit 99.9 4.7E-28 1.6E-32 213.1 11.6 195 2-243 96-310 (451)
51 4gl2_A Interferon-induced heli 99.9 3.9E-28 1.3E-32 224.8 10.6 99 121-229 400-509 (699)
52 2z83_A Helicase/nucleoside tri 99.9 2.4E-29 8.3E-34 221.7 2.3 186 13-244 108-313 (459)
53 2d7d_A Uvrabc system protein B 99.9 5.8E-27 2E-31 214.3 15.8 213 1-250 322-562 (661)
54 2fsf_A Preprotein translocase 99.9 1.7E-27 5.8E-32 216.9 9.6 128 101-246 419-585 (853)
55 2v6i_A RNA helicase; membrane, 99.9 2.1E-27 7E-32 207.8 8.3 184 12-241 88-288 (431)
56 1c4o_A DNA nucleotide excision 99.9 3.2E-26 1.1E-30 209.5 16.4 216 1-253 316-559 (664)
57 2eyq_A TRCF, transcription-rep 99.9 1E-25 3.5E-30 216.8 19.9 203 10-244 718-922 (1151)
58 1gm5_A RECG; helicase, replica 99.9 5.9E-27 2E-31 216.5 10.4 208 12-243 485-696 (780)
59 3rc3_A ATP-dependent RNA helic 99.9 2.1E-26 7.2E-31 209.8 11.5 223 1-261 220-461 (677)
60 1nkt_A Preprotein translocase 99.9 5.1E-26 1.7E-30 207.6 13.7 128 101-246 438-619 (922)
61 2fwr_A DNA repair protein RAD2 99.9 1E-25 3.4E-30 199.6 9.4 122 105-244 333-454 (472)
62 2oca_A DAR protein, ATP-depend 99.9 6.9E-25 2.3E-29 196.1 14.1 209 9-242 217-456 (510)
63 3dmq_A RNA polymerase-associat 99.9 5.1E-24 1.7E-28 202.4 17.5 127 106-245 488-616 (968)
64 3h1t_A Type I site-specific re 99.9 4.8E-24 1.6E-28 193.8 15.1 224 1-241 282-558 (590)
65 3jux_A Protein translocase sub 99.9 9.9E-22 3.4E-26 176.2 17.5 169 52-246 410-589 (822)
66 1z63_A Helicase of the SNF2/RA 99.9 6.5E-22 2.2E-26 176.4 14.2 127 107-246 325-455 (500)
67 1z5z_A Helicase of the SNF2/RA 99.8 6.6E-20 2.3E-24 150.3 14.0 128 104-244 93-224 (271)
68 1z3i_X Similar to RAD54-like; 99.8 5.5E-19 1.9E-23 161.6 20.4 123 108-244 400-528 (644)
69 3mwy_W Chromo domain-containin 99.8 5.1E-19 1.7E-23 165.7 20.4 135 108-256 557-698 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 5.6E-18 1.9E-22 160.6 13.9 71 172-243 637-708 (1038)
71 1wrb_A DJVLGB; RNA helicase, D 99.2 1.2E-11 4.1E-16 100.2 6.0 93 1-99 158-252 (253)
72 3fe2_A Probable ATP-dependent 99.2 1.6E-11 5.4E-16 98.9 5.6 80 1-88 160-239 (242)
73 3fmo_B ATP-dependent RNA helic 99.1 4E-11 1.4E-15 99.7 5.5 80 1-87 218-298 (300)
74 3iuy_A Probable ATP-dependent 99.1 5.5E-11 1.9E-15 94.7 5.1 67 1-70 151-217 (228)
75 3bor_A Human initiation factor 99.1 1E-10 3.5E-15 93.8 5.3 69 1-72 157-225 (237)
76 1q0u_A Bstdead; DEAD protein, 99.1 1.5E-10 5.2E-15 91.6 5.9 69 1-72 134-202 (219)
77 2oxc_A Probable ATP-dependent 99.1 9.6E-11 3.3E-15 93.5 4.7 66 1-68 150-215 (230)
78 2gxq_A Heat resistant RNA depe 99.0 1.9E-10 6.5E-15 90.1 5.7 69 1-72 128-196 (207)
79 1vec_A ATP-dependent RNA helic 99.0 3.9E-10 1.3E-14 88.2 6.6 68 1-71 130-197 (206)
80 1qde_A EIF4A, translation init 99.0 2.4E-10 8.2E-15 90.7 5.5 79 1-87 139-217 (224)
81 1t6n_A Probable ATP-dependent 99.0 3.3E-10 1.1E-14 89.7 5.7 68 1-70 142-209 (220)
82 3ber_A Probable ATP-dependent 99.0 3.4E-10 1.2E-14 91.5 5.8 69 1-72 169-238 (249)
83 3ly5_A ATP-dependent RNA helic 99.0 2.2E-10 7.4E-15 93.3 4.2 68 1-71 184-252 (262)
84 2pl3_A Probable ATP-dependent 99.0 5.8E-10 2E-14 89.3 5.4 67 1-70 154-221 (236)
85 3dkp_A Probable ATP-dependent 99.0 6.9E-10 2.4E-14 89.3 5.9 81 1-87 157-241 (245)
86 3llm_A ATP-dependent RNA helic 98.7 1.2E-08 4.1E-13 81.6 4.6 59 1-65 163-222 (235)
87 4a15_A XPD helicase, ATP-depen 98.4 4.6E-06 1.6E-10 75.8 13.0 102 120-240 447-581 (620)
88 2vl7_A XPD; helicase, unknown 98.4 8.1E-07 2.8E-11 79.6 7.7 100 120-240 383-518 (540)
89 2ipc_A Preprotein translocase 98.2 2.2E-05 7.6E-10 72.8 13.6 78 52-137 379-459 (997)
90 3b6e_A Interferon-induced heli 98.1 2.5E-06 8.5E-11 66.6 4.4 60 1-60 140-216 (216)
91 3crv_A XPD/RAD3 related DNA he 98.0 0.00012 4E-09 65.8 13.3 74 120-213 392-473 (551)
92 1rif_A DAR protein, DNA helica 97.7 3.2E-05 1.1E-09 63.2 5.0 52 11-69 219-270 (282)
93 3hgt_A HDA1 complex subunit 3; 97.4 0.00082 2.8E-08 55.5 9.8 126 105-248 107-241 (328)
94 2fz4_A DNA repair protein RAD2 96.9 0.00077 2.7E-08 53.5 4.5 41 16-64 191-231 (237)
95 1gm5_A RECG; helicase, replica 94.8 0.083 2.8E-06 49.2 8.2 78 121-208 417-496 (780)
96 3oiy_A Reverse gyrase helicase 93.5 0.19 6.4E-06 42.9 7.2 79 120-208 63-145 (414)
97 2eyq_A TRCF, transcription-rep 91.3 0.42 1.4E-05 46.6 7.3 78 120-207 651-730 (1151)
98 4ddu_A Reverse gyrase; topoiso 91.1 0.47 1.6E-05 46.0 7.4 79 120-208 120-202 (1104)
99 2ipc_A Preprotein translocase 87.1 0.19 6.6E-06 47.1 1.4 38 205-245 662-699 (997)
100 3ber_A Probable ATP-dependent 84.8 7.6 0.00026 30.3 9.6 75 120-208 110-192 (249)
101 1oyw_A RECQ helicase, ATP-depe 82.3 2.5 8.5E-05 37.3 6.3 60 121-193 65-124 (523)
102 3crv_A XPD/RAD3 related DNA he 82.1 0.51 1.7E-05 42.1 1.8 31 1-31 156-187 (551)
103 3iuy_A Probable ATP-dependent 81.7 4 0.00014 31.2 6.7 75 120-208 93-173 (228)
104 2v1x_A ATP-dependent DNA helic 81.2 2.7 9.3E-05 37.8 6.2 60 121-193 84-145 (591)
105 2oxc_A Probable ATP-dependent 80.9 4.1 0.00014 31.3 6.5 73 120-207 91-171 (230)
106 3bor_A Human initiation factor 80.6 4.2 0.00014 31.5 6.5 76 120-208 97-179 (237)
107 1t6n_A Probable ATP-dependent 80.5 5.3 0.00018 30.3 7.0 75 121-208 82-164 (220)
108 1vec_A ATP-dependent RNA helic 79.7 9.1 0.00031 28.5 8.0 74 121-208 71-152 (206)
109 2gxq_A Heat resistant RNA depe 79.7 8.1 0.00028 28.8 7.8 74 120-208 71-150 (207)
110 3fe2_A Probable ATP-dependent 79.1 6.2 0.00021 30.5 7.1 75 120-207 101-181 (242)
111 1w36_D RECD, exodeoxyribonucle 75.4 2.6 8.9E-05 38.0 4.3 37 17-60 262-298 (608)
112 2r2a_A Uncharacterized protein 74.2 3 0.0001 31.7 3.8 42 18-60 88-132 (199)
113 1gku_B Reverse gyrase, TOP-RG; 73.6 5.2 0.00018 38.6 6.1 76 120-207 98-180 (1054)
114 2kjq_A DNAA-related protein; s 73.3 2.4 8.3E-05 30.4 3.0 45 15-62 81-125 (149)
115 1qde_A EIF4A, translation init 73.0 5.2 0.00018 30.4 5.0 73 120-207 81-160 (224)
116 3ly5_A ATP-dependent RNA helic 72.4 14 0.00049 28.9 7.6 75 120-208 125-207 (262)
117 3ec2_A DNA replication protein 71.9 3.5 0.00012 30.3 3.7 48 15-63 98-145 (180)
118 2vl7_A XPD; helicase, unknown 70.3 1.3 4.5E-05 39.3 1.1 16 15-30 173-188 (540)
119 1l8q_A Chromosomal replication 68.9 4.5 0.00015 32.9 4.0 44 17-62 98-141 (324)
120 1xti_A Probable ATP-dependent 67.2 17 0.00059 30.0 7.4 74 121-207 76-157 (391)
121 1wp9_A ATP-dependent RNA helic 66.4 19 0.00065 30.4 7.7 73 120-207 51-130 (494)
122 2pl3_A Probable ATP-dependent 65.6 12 0.0004 28.7 5.6 73 120-207 96-176 (236)
123 3tbk_A RIG-I helicase domain; 65.4 11 0.00038 32.8 6.1 73 121-207 52-132 (555)
124 2z4s_A Chromosomal replication 64.3 7.5 0.00026 33.4 4.6 43 17-60 194-236 (440)
125 3bos_A Putative DNA replicatio 63.7 7.6 0.00026 29.5 4.2 31 16-46 103-133 (242)
126 1fuu_A Yeast initiation factor 63.3 15 0.00051 30.3 6.3 73 120-207 88-167 (394)
127 1wrb_A DJVLGB; RNA helicase, D 62.9 17 0.00057 28.1 6.2 74 121-208 100-180 (253)
128 3fmo_B ATP-dependent RNA helic 62.0 11 0.00037 30.4 5.0 71 121-208 162-241 (300)
129 2orw_A Thymidine kinase; TMTK, 61.1 12 0.0004 27.8 4.7 37 17-60 76-112 (184)
130 1g5t_A COB(I)alamin adenosyltr 61.1 5.7 0.00019 30.1 2.9 52 16-69 119-171 (196)
131 4a2p_A RIG-I, retinoic acid in 60.9 16 0.00054 31.9 6.2 74 121-208 55-136 (556)
132 4gl2_A Interferon-induced heli 60.7 3.9 0.00013 37.3 2.3 73 121-207 56-141 (699)
133 1w4r_A Thymidine kinase; type 60.2 10 0.00035 28.6 4.1 36 15-58 89-124 (195)
134 4a2q_A RIG-I, retinoic acid in 60.0 21 0.00073 33.1 7.2 73 121-207 296-376 (797)
135 1s2m_A Putative ATP-dependent 60.0 36 0.0012 28.1 8.1 75 120-208 88-169 (400)
136 1sxj_E Activator 1 40 kDa subu 59.8 8.5 0.00029 31.6 4.1 42 16-61 133-174 (354)
137 4ag6_A VIRB4 ATPase, type IV s 58.6 10 0.00035 31.8 4.4 42 17-59 262-305 (392)
138 1iqp_A RFCS; clamp loader, ext 58.1 12 0.00041 30.0 4.7 39 16-58 109-147 (327)
139 2fsf_A Preprotein translocase 58.1 31 0.0011 32.3 7.6 61 118-193 112-172 (853)
140 1hv8_A Putative ATP-dependent 57.7 32 0.0011 27.8 7.3 73 120-207 73-152 (367)
141 3e2i_A Thymidine kinase; Zn-bi 57.6 14 0.00047 28.5 4.5 35 16-57 100-134 (219)
142 1tf5_A Preprotein translocase 57.5 35 0.0012 32.0 7.9 61 117-192 120-180 (844)
143 2j9r_A Thymidine kinase; TK1, 56.0 16 0.00055 28.0 4.7 12 17-28 101-112 (214)
144 2db3_A ATP-dependent RNA helic 55.7 24 0.00081 30.0 6.3 73 121-207 129-208 (434)
145 3b6e_A Interferon-induced heli 54.9 14 0.00046 27.6 4.2 60 121-193 82-141 (216)
146 2chg_A Replication factor C sm 54.8 12 0.00039 27.9 3.8 39 16-58 101-139 (226)
147 2i4i_A ATP-dependent RNA helic 54.8 49 0.0017 27.4 8.1 72 122-207 102-180 (417)
148 1q0u_A Bstdead; DEAD protein, 53.0 8.7 0.0003 29.1 2.8 73 121-207 72-155 (219)
149 3kta_B Chromosome segregation 52.4 14 0.00049 27.1 3.8 40 17-59 86-125 (173)
150 1nkt_A Preprotein translocase 52.3 48 0.0016 31.3 7.9 61 117-192 148-208 (922)
151 3euj_A Chromosome partition pr 51.9 16 0.00055 31.8 4.6 39 16-60 413-451 (483)
152 2i3b_A HCR-ntpase, human cance 51.9 17 0.00057 27.1 4.2 44 15-63 103-147 (189)
153 2b8t_A Thymidine kinase; deoxy 50.1 19 0.00065 27.7 4.3 37 16-59 88-124 (223)
154 3eiq_A Eukaryotic initiation f 48.8 46 0.0016 27.6 6.9 75 120-207 107-188 (414)
155 3e1s_A Exodeoxyribonuclease V, 48.6 16 0.00056 32.6 4.2 39 15-60 277-315 (574)
156 1xx6_A Thymidine kinase; NESG, 48.6 22 0.00076 26.5 4.4 12 17-28 81-92 (191)
157 2gno_A DNA polymerase III, gam 47.3 20 0.00067 29.1 4.2 28 16-45 81-108 (305)
158 2j0s_A ATP-dependent RNA helic 46.9 68 0.0023 26.5 7.7 74 120-207 104-184 (410)
159 1jr3_D DNA polymerase III, del 46.9 19 0.00066 29.4 4.2 41 15-60 74-115 (343)
160 3dkp_A Probable ATP-dependent 45.8 9.7 0.00033 29.3 2.1 75 121-208 98-181 (245)
161 3te6_A Regulatory protein SIR3 45.5 27 0.00093 28.5 4.8 44 16-63 131-175 (318)
162 1d2n_A N-ethylmaleimide-sensit 45.5 15 0.0005 28.9 3.1 16 16-31 123-138 (272)
163 1sxj_A Activator 1 95 kDa subu 45.5 27 0.00093 30.5 5.1 43 16-62 147-190 (516)
164 1a5t_A Delta prime, HOLB; zinc 45.4 28 0.00097 28.3 5.0 28 16-45 107-134 (334)
165 1njg_A DNA polymerase III subu 44.4 14 0.00048 27.8 2.8 12 18-29 127-138 (250)
166 2z0m_A 337AA long hypothetical 43.7 33 0.0011 27.4 5.1 72 121-207 56-134 (337)
167 2p65_A Hypothetical protein PF 43.6 20 0.00067 25.7 3.4 13 18-30 116-128 (187)
168 2orv_A Thymidine kinase; TP4A 43.2 30 0.001 26.9 4.4 14 16-29 89-102 (234)
169 1sxj_C Activator 1 40 kDa subu 43.1 21 0.00073 29.1 3.9 39 16-58 109-147 (340)
170 3u61_B DNA polymerase accessor 43.0 16 0.00055 29.5 3.1 39 17-58 105-143 (324)
171 3syl_A Protein CBBX; photosynt 42.8 27 0.00091 27.8 4.4 14 18-31 131-144 (309)
172 2ykg_A Probable ATP-dependent 41.4 46 0.0016 30.1 6.1 73 122-208 62-142 (696)
173 1jbk_A CLPB protein; beta barr 41.2 40 0.0014 24.0 4.8 13 18-30 116-128 (195)
174 1sxj_D Activator 1 41 kDa subu 39.7 24 0.00081 28.7 3.7 39 16-58 132-170 (353)
175 3vfd_A Spastin; ATPase, microt 39.6 26 0.00088 29.3 3.9 13 19-31 209-221 (389)
176 4a2w_A RIG-I, retinoic acid in 38.7 29 0.001 33.0 4.5 73 121-207 296-376 (936)
177 3h4m_A Proteasome-activating n 38.6 25 0.00084 27.7 3.5 12 19-30 112-123 (285)
178 2o0j_A Terminase, DNA packagin 38.0 32 0.0011 28.9 4.2 39 17-58 273-311 (385)
179 4a15_A XPD helicase, ATP-depen 37.9 9.6 0.00033 34.4 1.0 15 17-31 204-218 (620)
180 1sxj_B Activator 1 37 kDa subu 37.4 16 0.00055 29.2 2.2 38 17-58 107-144 (323)
181 3kl4_A SRP54, signal recogniti 37.2 92 0.0032 26.6 7.0 55 16-72 178-234 (433)
182 2qen_A Walker-type ATPase; unk 37.2 32 0.0011 27.7 4.0 13 19-31 130-142 (350)
183 3d8b_A Fidgetin-like protein 1 37.0 25 0.00087 29.0 3.4 46 17-62 176-230 (357)
184 3eie_A Vacuolar protein sortin 36.8 49 0.0017 26.7 5.1 14 18-31 111-124 (322)
185 2v1u_A Cell division control p 36.5 23 0.00079 29.0 3.1 29 18-46 131-159 (387)
186 3upu_A ATP-dependent DNA helic 35.7 39 0.0013 29.0 4.5 38 14-58 125-162 (459)
187 2l8b_A Protein TRAI, DNA helic 35.2 30 0.001 25.9 3.1 44 11-60 115-158 (189)
188 3hjh_A Transcription-repair-co 34.6 1.9E+02 0.0064 25.1 8.6 113 97-220 16-143 (483)
189 1jr3_A DNA polymerase III subu 34.0 26 0.0009 28.7 3.0 27 17-45 119-145 (373)
190 2qz4_A Paraplegin; AAA+, SPG7, 34.0 40 0.0014 25.9 4.0 13 18-30 99-111 (262)
191 1c4o_A DNA nucleotide excision 33.2 2.7E+02 0.0094 25.1 10.4 87 99-197 32-143 (664)
192 2w0m_A SSO2452; RECA, SSPF, un 31.7 43 0.0015 25.0 3.7 44 17-61 121-168 (235)
193 8tfv_A Protein (thanatin); bac 31.5 18 0.0006 15.8 0.8 10 123-132 6-15 (21)
194 2w58_A DNAI, primosome compone 31.2 26 0.00088 25.9 2.3 14 16-29 114-127 (202)
195 2fna_A Conserved hypothetical 30.4 51 0.0017 26.5 4.2 38 19-59 139-178 (357)
196 3uk6_A RUVB-like 2; hexameric 30.2 31 0.0011 28.2 2.9 12 19-30 191-202 (368)
197 1xwi_A SKD1 protein; VPS4B, AA 30.0 66 0.0023 26.0 4.8 46 17-62 105-158 (322)
198 3sxu_A DNA polymerase III subu 29.9 1.5E+02 0.0051 21.0 9.6 79 108-211 24-104 (150)
199 1fnn_A CDC6P, cell division co 29.8 36 0.0012 28.0 3.2 41 18-60 126-168 (389)
200 2qp9_X Vacuolar protein sortin 29.7 50 0.0017 27.2 4.0 15 17-31 143-157 (355)
201 2chq_A Replication factor C sm 29.6 21 0.00071 28.5 1.6 15 16-30 101-115 (319)
202 1wv9_A Rhodanese homolog TT165 28.9 56 0.0019 20.7 3.4 35 122-169 54-88 (94)
203 3eme_A Rhodanese-like domain p 28.8 49 0.0017 21.4 3.2 36 121-169 56-91 (103)
204 3gk5_A Uncharacterized rhodane 28.4 53 0.0018 21.5 3.3 45 112-169 45-90 (108)
205 2p6r_A Afuhel308 helicase; pro 28.3 54 0.0018 29.8 4.3 71 120-207 67-143 (702)
206 3n70_A Transport activator; si 27.7 41 0.0014 23.4 2.8 12 19-30 78-89 (145)
207 4aby_A DNA repair protein RECN 27.7 45 0.0015 27.9 3.5 39 19-60 317-355 (415)
208 3pvs_A Replication-associated 27.6 25 0.00086 30.2 1.9 17 16-32 105-121 (447)
209 2oca_A DAR protein, ATP-depend 26.7 1.3E+02 0.0045 25.7 6.4 57 120-193 156-213 (510)
210 2kpt_A Putative secreted prote 26.5 37 0.0013 24.2 2.3 37 20-58 15-51 (148)
211 2c9o_A RUVB-like 1; hexameric 25.2 43 0.0015 28.7 2.9 11 19-29 297-307 (456)
212 3foj_A Uncharacterized protein 25.1 57 0.0019 20.9 2.9 36 121-169 56-91 (100)
213 3vkw_A Replicase large subunit 24.4 74 0.0025 27.3 4.1 36 17-60 234-269 (446)
214 3sqw_A ATP-dependent RNA helic 24.4 27 0.00092 31.0 1.5 78 121-207 95-180 (579)
215 3hu3_A Transitional endoplasmi 23.7 60 0.0021 28.2 3.6 43 19-63 299-350 (489)
216 2qby_A CDC6 homolog 1, cell di 23.5 43 0.0015 27.3 2.5 15 18-32 129-143 (386)
217 2qby_B CDC6 homolog 3, cell di 23.5 47 0.0016 27.2 2.8 13 20-32 136-148 (384)
218 2r62_A Cell division protease 23.5 29 0.001 26.9 1.4 14 18-31 104-117 (268)
219 2d7d_A Uvrabc system protein B 23.4 4.1E+02 0.014 23.9 9.4 89 98-198 35-148 (661)
220 3b9p_A CG5977-PA, isoform A; A 23.3 73 0.0025 25.0 3.8 16 17-32 113-128 (297)
221 1cr0_A DNA primase/helicase; R 23.3 34 0.0012 27.2 1.8 16 15-30 145-160 (296)
222 2zan_A Vacuolar protein sortin 23.2 85 0.0029 26.7 4.4 46 17-62 227-280 (444)
223 3flh_A Uncharacterized protein 22.8 66 0.0023 21.6 3.0 47 112-169 61-108 (124)
224 3g5j_A Putative ATP/GTP bindin 22.6 93 0.0032 20.8 3.8 36 122-170 90-126 (134)
225 3pey_A ATP-dependent RNA helic 22.2 1.5E+02 0.0052 24.0 5.7 70 120-207 74-150 (395)
226 2fwr_A DNA repair protein RAD2 22.0 1.6E+02 0.0055 24.9 6.0 59 107-192 120-179 (472)
227 3g13_A Putative conjugative tr 22.0 62 0.0021 23.2 2.9 13 35-47 60-72 (169)
228 3i5x_A ATP-dependent RNA helic 22.0 51 0.0017 28.9 2.8 77 122-207 147-231 (563)
229 3iwh_A Rhodanese-like domain p 21.6 81 0.0028 20.5 3.2 36 121-169 56-91 (103)
230 1qle_D Cytochrome AA3, ccytoch 21.4 60 0.002 17.7 2.0 19 164-182 4-22 (43)
231 2zj8_A DNA helicase, putative 21.3 66 0.0022 29.4 3.5 55 121-192 68-122 (720)
232 2zpa_A Uncharacterized protein 20.9 98 0.0034 28.2 4.4 37 15-62 253-289 (671)
233 3guv_A Site-specific recombina 20.6 1E+02 0.0034 22.0 3.8 13 35-47 58-70 (167)
234 1e69_A Chromosome segregation 20.4 97 0.0033 24.9 4.0 42 16-60 240-281 (322)
235 3cf0_A Transitional endoplasmi 20.0 82 0.0028 25.0 3.5 13 18-30 109-121 (301)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=8.8e-42 Score=299.50 Aligned_cols=242 Identities=21% Similarity=0.363 Sum_probs=210.2
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||||.+++.++.+.+++++++|+||||++++++ +...+..++..+......|++++|||+|+.+..+...+. .+
T Consensus 187 p~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~g-f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l-----~~ 260 (434)
T 2db3_A 187 PGRLLDFVDRTFITFEDTRFVVLDEADRMLDMG-FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFL-----KN 260 (434)
T ss_dssp HHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTT-THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTC-----SS
T ss_pred hHHHHHHHHhCCcccccCCeEEEccHhhhhccC-cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhc-----cC
Confidence 799999999999999999999999999999998 558888998876445789999999999998776554322 35
Q ss_pred eeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCc
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSD 160 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (269)
+..+..........++.+.+..+....|...+.+++..... ++||||++++.|+ .+++.|.+. ++.
T Consensus 261 ~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~----------~l~~~L~~~---~~~ 326 (434)
T 2db3_A 261 YVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQAD-GTIVFVETKRGAD----------FLASFLSEK---EFP 326 (434)
T ss_dssp CEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCT-TEEEECSSHHHHH----------HHHHHHHHT---TCC
T ss_pred CEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCC-CEEEEEeCcHHHH----------HHHHHHHhC---CCC
Confidence 66666666666677889999999888999999999987654 5999999999754 477888776 688
Q ss_pred eEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEe
Q 024287 161 VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240 (269)
Q Consensus 161 v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~ 240 (269)
+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+||+|.+.++|+||+||+||.| ..|.+++|
T Consensus 327 ~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g---~~G~a~~~ 403 (434)
T 2db3_A 327 TTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVG---NNGRATSF 403 (434)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTT---CCEEEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCC---CCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 88999999
Q ss_pred cCc-hhHHHHHHHHHHhcCccccccc
Q 024287 241 ITS-EELFVLQRYENELKFKSEELTL 265 (269)
Q Consensus 241 ~~~-~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
+++ .+......+.+.+....+++|.
T Consensus 404 ~~~~~~~~~~~~l~~~l~~~~~~vp~ 429 (434)
T 2db3_A 404 FDPEKDRAIAADLVKILEGSGQTVPD 429 (434)
T ss_dssp ECTTTCGGGHHHHHHHHHHTTCCCCG
T ss_pred EeccccHHHHHHHHHHHHHcCCCCCH
Confidence 995 5677788888888777777764
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.5e-40 Score=287.35 Aligned_cols=243 Identities=23% Similarity=0.409 Sum_probs=210.3
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||+|.+++.++.+.+++++++|+||+|++.+.+ ....+..++..++ .+.|++++|||+++.+..+.. .+. .+
T Consensus 163 p~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~i~~~~~--~~~~~i~~SAT~~~~~~~~~~----~~~-~~ 234 (410)
T 2j0s_A 163 PGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG-FKEQIYDVYRYLP--PATQVVLISATLPHEILEMTN----KFM-TD 234 (410)
T ss_dssp HHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTT-THHHHHHHHTTSC--TTCEEEEEESCCCHHHHTTGG----GTC-SS
T ss_pred HHHHHHHHHhCCccHhheeEEEEccHHHHHhhh-hHHHHHHHHHhCc--cCceEEEEEcCCCHHHHHHHH----HHc-CC
Confidence 789999999999999999999999999998887 4577888887764 789999999999987554322 222 34
Q ss_pred eeEEeecCcccCCCcceeEEEEecCcc-hHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKKM-KYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS 159 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (269)
+..+..........++.+.+..+.... +...+.+++.....+++||||++++.++ .+.+.|.+. ++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~----------~l~~~L~~~---~~ 301 (410)
T 2j0s_A 235 PIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVD----------WLTEKMREA---NF 301 (410)
T ss_dssp CEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHH----------HHHHHHHHT---TC
T ss_pred CEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHH----------HHHHHHHhC---CC
Confidence 455555555556677888888876654 8899999998888889999999998744 477777776 67
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEE
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~ 239 (269)
.+..+||+|++.+|..+++.|++|+.++||||+++++|+|+|++++||++|+|.+..+|+||+||+||.| ..|.++.
T Consensus 302 ~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g---~~g~~~~ 378 (410)
T 2j0s_A 302 TVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYG---RKGVAIN 378 (410)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGG---CCEEEEE
T ss_pred ceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCC---CceEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998 8899999
Q ss_pred ecCchhHHHHHHHHHHhcCccccccccc
Q 024287 240 IITSEELFVLQRYENELKFKSEELTLQT 267 (269)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (269)
++++.+...+..+++.++.+++++|++.
T Consensus 379 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 379 FVKNDDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp EEEGGGHHHHHHHHHHTTCCCEECCSCC
T ss_pred EecHHHHHHHHHHHHHhCCCceecccch
Confidence 9999999999999999999999999763
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.1e-39 Score=281.08 Aligned_cols=242 Identities=24% Similarity=0.387 Sum_probs=201.7
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhc--cCCCccEEEEeccCCchhhHHHHHHhhhccc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS--SCNNRQTVFASASIPQHRRFLHNCIQQKWTK 78 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~--~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~ 78 (269)
||+|.+++..+.+.+++++++|+||+|++.+++ ....+..++.... .....|++++|||+++.+..+...+.
T Consensus 159 p~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~-~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~----- 232 (417)
T 2i4i_A 159 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG-FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL----- 232 (417)
T ss_dssp HHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTT-CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHC-----
T ss_pred hHHHHHHHHcCCcChhhCcEEEEEChhHhhccC-cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHc-----
Confidence 789999999999999999999999999998887 5578888887432 22378999999999987665543332
Q ss_pred CceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhc-CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC
Q 024287 79 SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD-APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG 157 (269)
Q Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (269)
.++..+..........++.+.+..+....+...+.++++.. .++++||||++++.++. +++.|.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~----------l~~~L~~~--- 299 (417)
T 2i4i_A 233 DEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADS----------LEDFLYHE--- 299 (417)
T ss_dssp SSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHH----------HHHHHHHT---
T ss_pred CCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHH----------HHHHHHHC---
Confidence 34455555555566778888898888889999999999876 46789999999987544 77778776
Q ss_pred CCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEE
Q 024287 158 SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237 (269)
Q Consensus 158 ~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~ 237 (269)
+..+..+||+|++.+|.++++.|++|+.+|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.| ..|.+
T Consensus 300 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g---~~g~~ 376 (417)
T 2i4i_A 300 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG---NLGLA 376 (417)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC-----CCEEE
T ss_pred CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCC---CCceE
Confidence 678999999999999999999999999999999999999999999999999999999999999999999998 78999
Q ss_pred EEecCchhHHHHHHHHHHhcCcccccc
Q 024287 238 TSIITSEELFVLQRYENELKFKSEELT 264 (269)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (269)
+.++++.+...+..+.+.+.....++|
T Consensus 377 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ 403 (417)
T 2i4i_A 377 TSFFNERNINITKDLLDLLVEAKQEVP 403 (417)
T ss_dssp EEEECGGGGGGHHHHHHHHHHTTCCCC
T ss_pred EEEEccccHHHHHHHHHHHHHhcCcCC
Confidence 999999999998899888865555544
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=282.22 Aligned_cols=243 Identities=22% Similarity=0.386 Sum_probs=194.8
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||+|.+++.++.+.+++++++|+||+|++.+.+ ....+..++..++ .+.|++++|||+++....+.. .+. .+
T Consensus 167 ~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~~~~~~~--~~~~~i~~SAT~~~~~~~~~~----~~~-~~ 238 (414)
T 3eiq_A 167 PGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG-FKDQIYDIFQKLN--SNTQVVLLSATMPSDVLEVTK----KFM-RD 238 (414)
T ss_dssp HHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTT-THHHHHHHHTTSC--TTCEEEEECSCCCHHHHHHHT----TTC-SS
T ss_pred HHHHHHHHHcCCcccccCcEEEEECHHHhhccC-cHHHHHHHHHhCC--CCCeEEEEEEecCHHHHHHHH----HHc-CC
Confidence 689999999999999999999999999988777 4477888887775 789999999999887554432 222 34
Q ss_pred eeEEeecCcccCCCcceeEEEEecCc-chHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKK-MKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS 159 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (269)
+..+...........+.+.+..+... .+...+..++.....+++||||++++.++ .+++.|.+. +.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~----------~l~~~l~~~---~~ 305 (414)
T 3eiq_A 239 PIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVD----------WLTEKMHAR---DF 305 (414)
T ss_dssp CEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHH----------HHHHHHHTT---TC
T ss_pred CEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHH----------HHHHHHHhc---CC
Confidence 45555555556667788888777654 58999999999888899999999998744 477778776 67
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEE
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~ 239 (269)
.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.| ..|.++.
T Consensus 306 ~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g---~~g~~~~ 382 (414)
T 3eiq_A 306 TVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFG---RKGVAIN 382 (414)
T ss_dssp CCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC----------CEEE
T ss_pred eEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCC---CCceEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998 7899999
Q ss_pred ecCchhHHHHHHHHHHhcCccccccccc
Q 024287 240 IITSEELFVLQRYENELKFKSEELTLQT 267 (269)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (269)
++++.+...+..+++.++.+++++|.+.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (414)
T 3eiq_A 383 MVTEEDKRTLRDIETFYNTSIEEMPLNV 410 (414)
T ss_dssp EECSTHHHHHHHHHHHTTCCCEECCC--
T ss_pred EEcHHHHHHHHHHHHHHcCCccccChhh
Confidence 9999999999999999999999998763
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.1e-38 Score=272.43 Aligned_cols=243 Identities=19% Similarity=0.314 Sum_probs=205.6
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
|++|.+++.++.+.+++++++|+||+|.+.++......+..++...+ ...|++++|||+++....+...+ . .+
T Consensus 136 ~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~--~~~~~i~~SAT~~~~~~~~~~~~----~-~~ 208 (391)
T 1xti_A 136 PGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP--HEKQVMMFSATLSKEIRPVCRKF----M-QD 208 (391)
T ss_dssp HHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSC--SSSEEEEEESSCCSTHHHHHHHH----C-SS
T ss_pred HHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCC--CCceEEEEEeeCCHHHHHHHHHH----c-CC
Confidence 67899999999999999999999999998876446677777777654 68999999999998866544322 2 23
Q ss_pred eeEEeecCc-ccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC
Q 024287 81 VVHVHVNAI-KPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS 159 (269)
Q Consensus 81 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (269)
+..+..... ......+.+.+..+....+...+.+++....++++||||++++.++. +++.|.+. +.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~----------l~~~L~~~---~~ 275 (391)
T 1xti_A 209 PMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIA----------LAQLLVEQ---NF 275 (391)
T ss_dssp CEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHH----------HHHHHHHT---TC
T ss_pred CeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHH----------HHHHHHhC---CC
Confidence 333333332 34456678888888888999999999998888999999999987544 77777776 67
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEE
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~ 239 (269)
.+..+||+|++.+|.++++.|++|+.++||||+++++|+|+|++++||+++.|.+..+|+||+||+||.| ..|.++.
T Consensus 276 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g---~~g~~~~ 352 (391)
T 1xti_A 276 PAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG---TKGLAIT 352 (391)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSC---CCCEEEE
T ss_pred cEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCC---CceEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998 7899999
Q ss_pred ecCch-hHHHHHHHHHHhcCcccccccc
Q 024287 240 IITSE-ELFVLQRYENELKFKSEELTLQ 266 (269)
Q Consensus 240 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 266 (269)
++++. +...+..+++.++.+++++|.+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 353 FVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred EEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 99865 6678899999999999999864
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5e-38 Score=272.82 Aligned_cols=241 Identities=21% Similarity=0.320 Sum_probs=203.6
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||+|.+++.++...+++++++|+||+|++.+.+ ....+..++..++ ...|++++|||++.......... .. .
T Consensus 147 ~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~-~~~~~~~i~~~~~--~~~~~i~lSAT~~~~~~~~~~~~----~~-~ 218 (400)
T 1s2m_A 147 PGRVLDLASRKVADLSDCSLFIMDEADKMLSRD-FKTIIEQILSFLP--PTHQSLLFSATFPLTVKEFMVKH----LH-K 218 (400)
T ss_dssp HHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH-HHHHHHHHHTTSC--SSCEEEEEESCCCHHHHHHHHHH----CS-S
T ss_pred hHHHHHHHHhCCcccccCCEEEEeCchHhhhhc-hHHHHHHHHHhCC--cCceEEEEEecCCHHHHHHHHHH----cC-C
Confidence 688999999988899999999999999887765 4467777776654 67899999999998765443222 11 2
Q ss_pred eeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCc
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSD 160 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (269)
+..+.... .....++.+.+..+....+...+..++.....+++||||++++.++. +++.|.+. +..
T Consensus 219 ~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~----------l~~~L~~~---~~~ 284 (400)
T 1s2m_A 219 PYEINLME-ELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVEL----------LAKKITDL---GYS 284 (400)
T ss_dssp CEEESCCS-SCBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHH----------HHHHHHHH---TCC
T ss_pred CeEEEecc-ccccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHH----------HHHHHHhc---CCC
Confidence 22333222 23455677888888888899999999988888899999999987544 77777776 678
Q ss_pred eEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEe
Q 024287 161 VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240 (269)
Q Consensus 161 v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~ 240 (269)
+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.| ..|.++.+
T Consensus 285 ~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g---~~g~~~~l 361 (400)
T 1s2m_A 285 CYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFG---HLGLAINL 361 (400)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTT---CCEEEEEE
T ss_pred eEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCC---CCceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 78999999
Q ss_pred cCchhHHHHHHHHHHhcCcccccccc
Q 024287 241 ITSEELFVLQRYENELKFKSEELTLQ 266 (269)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (269)
+++.|...+.++++.++.+++++|..
T Consensus 362 ~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 362 INWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp ECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred eccchHHHHHHHHHHhCCCccccccc
Confidence 99999999999999999999988853
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=7.4e-38 Score=272.51 Aligned_cols=244 Identities=25% Similarity=0.388 Sum_probs=202.3
Q ss_pred CchhhHHHHh-CceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEK-HIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~-~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
||+|.+++.+ +.+.+++++++|+||+|++.+.......+..+...++ .+.|++++|||+++....+...+. .
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~--~~~~~i~~SAT~~~~~~~~~~~~~-----~ 223 (412)
T 3fht_A 151 PGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--RNCQMLLFSATFEDSVWKFAQKVV-----P 223 (412)
T ss_dssp HHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC--TTCEEEEEESCCCHHHHHHHHHHS-----S
T ss_pred chHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC--CCceEEEEEeecCHHHHHHHHHhc-----C
Confidence 6889888866 6678999999999999998875445567777777664 789999999999987665543322 3
Q ss_pred ceeEEeecCcccCCCcceeEEEEecC-cchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCC
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFVICGK-KMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGS 158 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (269)
++..+...........+.+.+..+.. ..+...+..++.....+++||||++++.++. +++.|.+. +
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~----------l~~~L~~~---~ 290 (412)
T 3fht_A 224 DPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASW----------LAAELSKE---G 290 (412)
T ss_dssp SCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHH----------HHHHHHHT---T
T ss_pred CCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHH----------HHHHHHhC---C
Confidence 44555566566667778888877765 5688889999988888999999999997544 77788776 6
Q ss_pred CceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCC------CccccccccccCCCCCCCC
Q 024287 159 SDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPR------SAIDYLHRAGRTGRKPFSD 232 (269)
Q Consensus 159 ~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~------~~~~~~qr~GR~gR~~~~~ 232 (269)
..+..+||+|++.+|.++++.|++|+.+|||||+++++|+|+|++++||++|+|. +..+|+||+||+||.|
T Consensus 291 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g--- 367 (412)
T 3fht_A 291 HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG--- 367 (412)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTT---
T ss_pred CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCC---
Confidence 7899999999999999999999999999999999999999999999999999994 6689999999999998
Q ss_pred CCeEEEEecCch-hHHHHHHHHHHhcCccccccccc
Q 024287 233 EKWTVTSIITSE-ELFVLQRYENELKFKSEELTLQT 267 (269)
Q Consensus 233 ~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 267 (269)
..|.++.++++. +...+..+++.++..+++++.+.
T Consensus 368 ~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 403 (412)
T 3fht_A 368 KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 403 (412)
T ss_dssp CCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC----
T ss_pred CCceEEEEEcChhhHHHHHHHHHHHCCccccCCCcc
Confidence 789999999865 58899999999999999888654
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.3e-37 Score=266.04 Aligned_cols=244 Identities=21% Similarity=0.379 Sum_probs=201.9
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||+|.+++.++...+++++++|+||+|.+.+.......+..+...++ .+.|++++|||+++....+...+. .+
T Consensus 129 ~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~--~~~~~i~~SAT~~~~~~~~~~~~~-----~~ 201 (395)
T 3pey_A 129 PGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP--KDTQLVLFSATFADAVRQYAKKIV-----PN 201 (395)
T ss_dssp HHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSC--TTCEEEEEESCCCHHHHHHHHHHS-----CS
T ss_pred HHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCC--CCcEEEEEEecCCHHHHHHHHHhC-----CC
Confidence 68899999999999999999999999988874435567777777664 679999999999987665443322 23
Q ss_pred eeEEeecCcccCCCcceeEEEEecC-cchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGK-KMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS 159 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (269)
...+...........+.+.+..+.. ..+...+..++.....+++||||++++.++ .+++.|.+. +.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~----------~l~~~l~~~---~~ 268 (395)
T 3pey_A 202 ANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTAN----------VLYGKLKSE---GH 268 (395)
T ss_dssp CEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHH----------HHHHHHHHT---TC
T ss_pred CeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHH----------HHHHHHHhc---CC
Confidence 3444555445556667777777644 467888888888878899999999998754 477788776 67
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCC------CccccccccccCCCCCCCCC
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPR------SAIDYLHRAGRTGRKPFSDE 233 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~------~~~~~~qr~GR~gR~~~~~~ 233 (269)
.+..+||+|+..+|.++++.|++|+.++||||+++++|+|+|++++||++|+|. +..+|+||+||+||.| .
T Consensus 269 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g---~ 345 (395)
T 3pey_A 269 EVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFG---R 345 (395)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTT---C
T ss_pred cEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCC---C
Confidence 899999999999999999999999999999999999999999999999999998 9999999999999998 7
Q ss_pred CeEEEEecCc-hhHHHHHHHHHHhc-Cccccccccc
Q 024287 234 KWTVTSIITS-EELFVLQRYENELK-FKSEELTLQT 267 (269)
Q Consensus 234 ~g~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 267 (269)
.|.++.++++ ++...+..+++.++ .++.++|.+.
T Consensus 346 ~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 381 (395)
T 3pey_A 346 KGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDD 381 (395)
T ss_dssp CEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSC
T ss_pred CceEEEEEechHHHHHHHHHHHHhCCceeecCChHH
Confidence 8999999885 56778889999988 8888877643
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-36 Score=261.07 Aligned_cols=236 Identities=22% Similarity=0.413 Sum_probs=199.6
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
|++|.+.+.++.+.+++++++|+||+|.+.+.+ ....+..++...+ ...+++++|||+++....+...+. .+
T Consensus 131 ~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~-~~~~~~~~~~~~~--~~~~~i~~SAT~~~~~~~~~~~~~-----~~ 202 (367)
T 1hv8_A 131 PGRILDHINRGTLNLKNVKYFILDEADEMLNMG-FIKDVEKILNACN--KDKRILLFSATMPREILNLAKKYM-----GD 202 (367)
T ss_dssp HHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTT-THHHHHHHHHTSC--SSCEEEEECSSCCHHHHHHHHHHC-----CS
T ss_pred HHHHHHHHHcCCcccccCCEEEEeCchHhhhhc-hHHHHHHHHHhCC--CCceEEEEeeccCHHHHHHHHHHc-----CC
Confidence 678899999999999999999999999988877 4577777777654 789999999999987554433221 12
Q ss_pred eeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCc
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSD 160 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (269)
+..+... ....+.+.+..+....+...+.+++.. .+.+++|||++++.++. +++.|.+. +..
T Consensus 203 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~lvf~~~~~~~~~----------l~~~L~~~---~~~ 264 (367)
T 1hv8_A 203 YSFIKAK----INANIEQSYVEVNENERFEALCRLLKN-KEFYGLVFCKTKRDTKE----------LASMLRDI---GFK 264 (367)
T ss_dssp EEEEECC----SSSSSEEEEEECCGGGHHHHHHHHHCS-TTCCEEEECSSHHHHHH----------HHHHHHHT---TCC
T ss_pred CeEEEec----CCCCceEEEEEeChHHHHHHHHHHHhc-CCCcEEEEECCHHHHHH----------HHHHHHhc---CCC
Confidence 2222221 234677888888888899999988873 56799999999987544 77778776 678
Q ss_pred eEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEe
Q 024287 161 VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240 (269)
Q Consensus 161 v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~ 240 (269)
+..+||+++..+|.++++.|++|+.++||||+++++|+|+|++++||+++.|.+..+|.||+||+||.| ..|.++.+
T Consensus 265 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g---~~g~~~~~ 341 (367)
T 1hv8_A 265 AGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAG---KKGKAISI 341 (367)
T ss_dssp EEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSS---SCCEEEEE
T ss_pred eEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCC---CccEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 78999999
Q ss_pred cCchhHHHHHHHHHHhcCccccccc
Q 024287 241 ITSEELFVLQRYENELKFKSEELTL 265 (269)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
+++.+...+..+++.++.++++++.
T Consensus 342 ~~~~~~~~~~~i~~~~~~~~~~~~~ 366 (367)
T 1hv8_A 342 INRREYKKLRYIERAMKLKIKKLKF 366 (367)
T ss_dssp ECTTSHHHHHHHHHHHTCCCCCBC-
T ss_pred EcHHHHHHHHHHHHHhCCCCceecc
Confidence 9999999999999999999998764
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.4e-36 Score=275.57 Aligned_cols=245 Identities=22% Similarity=0.310 Sum_probs=191.5
Q ss_pred CchhhHHHHhC-ceecCcccEEEEeccccccCCchhhhHHHHHHhhhcc-----CCCccEEEEeccCCchhhHHHHHHhh
Q 024287 1 MGSLCQLIEKH-IFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSS-----CNNRQTVFASASIPQHRRFLHNCIQQ 74 (269)
Q Consensus 1 pgrl~~~l~~~-~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~-----~~~~q~i~~SATl~~~~~~l~~~~~~ 74 (269)
||+|.+++.++ ...++++++||+||||++++++ +...+..++..++. ..+.|++++|||+++.+..+..
T Consensus 158 p~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~g-f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~---- 232 (579)
T 3sqw_A 158 PGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG-FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLAN---- 232 (579)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTT-THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTT----
T ss_pred HHHHHHHHHhccccccccCCEEEEEChHHhhcCC-CHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHH----
Confidence 78999999886 5688999999999999999998 55777777766541 2378999999999987665432
Q ss_pred hcccC-ceeEEeecC--cccCCCcceeEEEEecCc-chH----HHHHHHHhh-cCCCceEEEeeccchhhhhcCCCCchH
Q 024287 75 KWTKS-DVVHVHVNA--IKPLPSCLHHRFVICGKK-MKY----QTLLSLIQS-DAPESGIIFVGEQSEKSKKAGNAPSTT 145 (269)
Q Consensus 75 ~~~~~-~~~~~~~~~--~~~~~~~i~~~~~~~~~~-~k~----~~l~~ll~~-~~~~~~lIF~~s~~~~~~~~~~~~~~~ 145 (269)
.++.. ....+.... .......+.+.+...... .+. ..+...+.. ..+.++||||+++..|+.
T Consensus 233 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~--------- 303 (579)
T 3sqw_A 233 NIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSF--------- 303 (579)
T ss_dssp TTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHH---------
T ss_pred HHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHH---------
Confidence 22222 222222211 223344566666666542 222 233333333 446799999999987544
Q ss_pred HHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccC
Q 024287 146 LLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRT 225 (269)
Q Consensus 146 ~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~ 225 (269)
+++.|.+.+..+..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.++.+|+||+||+
T Consensus 304 -l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRa 382 (579)
T 3sqw_A 304 -LCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRT 382 (579)
T ss_dssp -HHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTS
T ss_pred -HHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhcccc
Confidence 7777777766678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCeEEEEecCchhHHHHHHHHHHhcCccccc
Q 024287 226 GRKPFSDEKWTVTSIITSEELFVLQRYENELKFKSEEL 263 (269)
Q Consensus 226 gR~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (269)
||.| ..|.+++++++.|...+..+++..+..++..
T Consensus 383 gR~g---~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 417 (579)
T 3sqw_A 383 ARSG---KEGSSVLFICKDELPFVRELEDAKNIVIAKQ 417 (579)
T ss_dssp SCTT---CCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred ccCC---CCceEEEEEcccHHHHHHHHHHHhCCCcccc
Confidence 9998 7899999999999999999999887766544
No 11
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.1e-36 Score=275.67 Aligned_cols=245 Identities=22% Similarity=0.313 Sum_probs=191.0
Q ss_pred CchhhHHHHhC-ceecCcccEEEEeccccccCCchhhhHHHHHHhhhc-----cCCCccEEEEeccCCchhhHHHHHHhh
Q 024287 1 MGSLCQLIEKH-IFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS-----SCNNRQTVFASASIPQHRRFLHNCIQQ 74 (269)
Q Consensus 1 pgrl~~~l~~~-~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~-----~~~~~q~i~~SATl~~~~~~l~~~~~~ 74 (269)
||+|.+++.++ ...+++++++|+||||++++++ +.+.+..++..++ ...+.|++++|||+++.+..+..
T Consensus 209 p~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~-f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~---- 283 (563)
T 3i5x_A 209 PGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG-FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLAN---- 283 (563)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTT-THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTT----
T ss_pred cHHHHHHHHhccccccccceEEEEeCHHHHhccc-hHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHH----
Confidence 78999999876 4578999999999999999988 5577777776653 13478999999999987665432
Q ss_pred hcccC-ceeEEeecC--cccCCCcceeEEEEecCc-chH----HHHHHHHhh-cCCCceEEEeeccchhhhhcCCCCchH
Q 024287 75 KWTKS-DVVHVHVNA--IKPLPSCLHHRFVICGKK-MKY----QTLLSLIQS-DAPESGIIFVGEQSEKSKKAGNAPSTT 145 (269)
Q Consensus 75 ~~~~~-~~~~~~~~~--~~~~~~~i~~~~~~~~~~-~k~----~~l~~ll~~-~~~~~~lIF~~s~~~~~~~~~~~~~~~ 145 (269)
.+... ....+.... .......+.+.+...... .+. ..+...+.. ..+.++||||+|+..|+.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~--------- 354 (563)
T 3i5x_A 284 NIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSF--------- 354 (563)
T ss_dssp TTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHH---------
T ss_pred HhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHH---------
Confidence 22222 222222211 123344566666665542 222 223333333 456799999999997544
Q ss_pred HHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccC
Q 024287 146 LLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRT 225 (269)
Q Consensus 146 ~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~ 225 (269)
+++.|.+.+..+..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|.+..+|+||+||+
T Consensus 355 -l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRa 433 (563)
T 3i5x_A 355 -LCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRT 433 (563)
T ss_dssp -HHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTS
T ss_pred -HHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCcc
Confidence 7777777766678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCeEEEEecCchhHHHHHHHHHHhcCccccc
Q 024287 226 GRKPFSDEKWTVTSIITSEELFVLQRYENELKFKSEEL 263 (269)
Q Consensus 226 gR~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (269)
||.| ..|.+++++++.|...++.+++..+..+++.
T Consensus 434 gR~g---~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 468 (563)
T 3i5x_A 434 ARSG---KEGSSVLFICKDELPFVRELEDAKNIVIAKQ 468 (563)
T ss_dssp SCTT---CCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred ccCC---CCceEEEEEchhHHHHHHHHHHHhCCCcccc
Confidence 9998 7899999999999999999999887776644
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=282.32 Aligned_cols=243 Identities=26% Similarity=0.391 Sum_probs=61.1
Q ss_pred CchhhHHHHh-CceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEK-HIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~-~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
||+|.+++.+ +.+.++++++||+||+|++++.......+..+...++ .+.|++++|||+++....+...+. .
T Consensus 218 p~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~--~~~~~i~~SAT~~~~~~~~~~~~~-----~ 290 (479)
T 3fmp_B 218 PGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--RNCQMLLFSATFEDSVWKFAQKVV-----P 290 (479)
T ss_dssp HHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC--TTSEEEEEESCCCHHHHHHHHHHS-----S
T ss_pred chHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC--ccceEEEEeCCCCHHHHHHHHHHc-----C
Confidence 7899999966 5678999999999999998874435567777777764 789999999999988765544332 4
Q ss_pred ceeEEeecCcccCCCcceeEEEEecC-cchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCC
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFVICGK-KMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGS 158 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (269)
++..+...........+.+.+..++. ..+...+..++.....++++|||+++..|+. +++.|.+. +
T Consensus 291 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~----------l~~~L~~~---~ 357 (479)
T 3fmp_B 291 DPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASW----------LAAELSKE---G 357 (479)
T ss_dssp SEEEEEEC------------------------------------------------------------------------
T ss_pred CCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHH----------HHHHHHhC---C
Confidence 55666666666666777788777765 5688888888887777899999999997555 55666554 5
Q ss_pred CceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCC------CCccccccccccCCCCCCCC
Q 024287 159 SDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLP------RSAIDYLHRAGRTGRKPFSD 232 (269)
Q Consensus 159 ~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p------~~~~~~~qr~GR~gR~~~~~ 232 (269)
..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|
T Consensus 358 ~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g--- 434 (479)
T 3fmp_B 358 HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG--- 434 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCC---
Confidence 679999999999999999999999999999999999999999999999999999 46789999999999998
Q ss_pred CCeEEEEecCch-hHHHHHHHHHHhcCcccccccc
Q 024287 233 EKWTVTSIITSE-ELFVLQRYENELKFKSEELTLQ 266 (269)
Q Consensus 233 ~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 266 (269)
..|.++.|+++. +...+..+++.++.++++++.+
T Consensus 435 ~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 469 (479)
T 3fmp_B 435 KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTD 469 (479)
T ss_dssp -----------------------------------
T ss_pred CCceEEEEEcCcchHHHHHHHHHHhCCCceECCCc
Confidence 789999999865 4888999999999999888765
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.7e-38 Score=274.98 Aligned_cols=242 Identities=24% Similarity=0.377 Sum_probs=61.0
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||+|.+.+.++.+.+++++++|+||+|.+.+.+ ....+..++..++ ...|++++|||+++....+...+ . .+
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~-~~~~~~~~~~~~~--~~~~~i~~SAT~~~~~~~~~~~~----~-~~ 217 (394)
T 1fuu_A 146 PGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG-FKEQIYQIFTLLP--PTTQVVLLSATMPNDVLEVTTKF----M-RN 217 (394)
T ss_dssp HHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT-CHHHHHHHHHHSC--TTCEEEEECSSCCHHHHHHHHHH----C-CS
T ss_pred HHHHHHHHHhCCcchhhCcEEEEEChHHhhCCC-cHHHHHHHHHhCC--CCceEEEEEEecCHHHHHHHHHh----c-CC
Confidence 688999999999999999999999999988777 4477778887765 78999999999998765443322 2 23
Q ss_pred eeEEeecCcccCCCcceeEEEEecCc-chHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKK-MKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS 159 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (269)
+..+...........+.+.+..+... .+...+.++++....+++||||++++.++. +++.|.+. +.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~----------l~~~L~~~---~~ 284 (394)
T 1fuu_A 218 PVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEE----------LTTKLRND---KF 284 (394)
T ss_dssp CEEEEECC------------------------------------------------------------------------
T ss_pred CeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHH----------HHHHHHHc---CC
Confidence 44445444444455666666665554 377788888887777899999999997655 55566554 57
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEE
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~ 239 (269)
.+..+||+|++.+|.++++.|++|+.++||||+++++|+|+|++++||+++.|.+..+|+||+||+||.| ..|.++.
T Consensus 285 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g---~~g~~~~ 361 (394)
T 1fuu_A 285 TVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG---RKGVAIN 361 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCC---CCceEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998 7899999
Q ss_pred ecCchhHHHHHHHHHHhcCcccccccc
Q 024287 240 IITSEELFVLQRYENELKFKSEELTLQ 266 (269)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (269)
++++.+...+..+++.++.+++++|.+
T Consensus 362 ~~~~~~~~~~~~l~~~~~~~~~~~~~~ 388 (394)
T 1fuu_A 362 FVTNEDVGAMRELEKFYSTQIEELPSD 388 (394)
T ss_dssp ---------------------------
T ss_pred EEchhHHHHHHHHHHHhCCcccccCcc
Confidence 999999999999999999999988865
No 14
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-36 Score=269.66 Aligned_cols=244 Identities=19% Similarity=0.307 Sum_probs=173.4
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
|++|.+.+.++.+.+++++++|+||+|.+.+.......+..+...++ .+.|++++|||+++....+...+. .+
T Consensus 243 ~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~--~~~~~i~lSAT~~~~~~~~~~~~~-----~~ 315 (508)
T 3fho_A 243 PGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP--RNTQIVLFSATFSERVEKYAERFA-----PN 315 (508)
T ss_dssp HHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSC--TTCEEEEEESCCSTHHHHHHHHHS-----TT
T ss_pred HHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCC--cCCeEEEEeCCCCHHHHHHHHHhc-----CC
Confidence 67889999999999999999999999988874435577777777764 689999999999987665554332 23
Q ss_pred eeEEeecCcccCCCcceeEEEEec-CcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICG-KKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS 159 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (269)
+..+...........+.+.+.... ...+...+..++....++++||||++++.|+. +.+.|.+. +.
T Consensus 316 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~----------l~~~L~~~---~~ 382 (508)
T 3fho_A 316 ANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEE----------IARRMTAD---GH 382 (508)
T ss_dssp CEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTH----------HHHHHTTT---TC
T ss_pred CeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHH----------HHHHHHhC---CC
Confidence 444455444445556667776663 45688888888888888999999999997555 66777665 67
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCC------CCccccccccccCCCCCCCCC
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLP------RSAIDYLHRAGRTGRKPFSDE 233 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p------~~~~~~~qr~GR~gR~~~~~~ 233 (269)
.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++|.| .+..+|+||+||+||.| .
T Consensus 383 ~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g---~ 459 (508)
T 3fho_A 383 TVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFG---R 459 (508)
T ss_dssp CCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-------
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCC---C
Confidence 89999999999999999999999999999999999999999999999999999 78999999999999998 7
Q ss_pred CeEEEEecC-chhHHHHHHHHHHhcCccccccccc
Q 024287 234 KWTVTSIIT-SEELFVLQRYENELKFKSEELTLQT 267 (269)
Q Consensus 234 ~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (269)
.|.++.+++ +.+...+..+++.++.+++++|.++
T Consensus 460 ~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~ 494 (508)
T 3fho_A 460 VGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDD 494 (508)
T ss_dssp -CEEEEEECTTTSSSSHHHHHHHSCCCCC------
T ss_pred CcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCcc
Confidence 889998887 4667788899999999999988764
No 15
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.7e-34 Score=256.01 Aligned_cols=229 Identities=16% Similarity=0.170 Sum_probs=169.4
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCch-hhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSK-QVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~-~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
|++|......+.+...+++++||||||++.++|. +++.+..+.......++.|++++|||+++....- +...+...
T Consensus 123 pe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~---i~~~l~~~ 199 (523)
T 1oyw_A 123 PERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQD---IVRLLGLN 199 (523)
T ss_dssp HHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHH---HHHHHTCC
T ss_pred HHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHH---HHHHhCCC
Confidence 4455432223334557889999999999998873 3344433322222225799999999998764321 11222222
Q ss_pred ceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCC
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSS 159 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (269)
++... ..... ..++ .+.......+...+.+++....++++||||+|++.++. +++.|.+. +.
T Consensus 200 ~~~~~-~~~~~--r~~l--~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~----------l~~~L~~~---g~ 261 (523)
T 1oyw_A 200 DPLIQ-ISSFD--RPNI--RYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVED----------TAARLQSK---GI 261 (523)
T ss_dssp SCEEE-ECCCC--CTTE--EEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHH----------HHHHHHHT---TC
T ss_pred CCeEE-eCCCC--CCce--EEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHH----------HHHHHHHC---CC
Confidence 22222 21111 2233 23334456678888888888777899999999997554 77788776 67
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEE
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTS 239 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~ 239 (269)
.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+.++|+||+||+||.| ..|.+++
T Consensus 262 ~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g---~~~~~~l 338 (523)
T 1oyw_A 262 SAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG---LPAEAML 338 (523)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTS---SCEEEEE
T ss_pred CEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCC---CCceEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998 7899999
Q ss_pred ecCchhHHHHHHHH
Q 024287 240 IITSEELFVLQRYE 253 (269)
Q Consensus 240 ~~~~~~~~~~~~~~ 253 (269)
++++.|...++.+.
T Consensus 339 ~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 339 FYDPADMAWLRRCL 352 (523)
T ss_dssp EECHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHH
Confidence 99988876655443
No 16
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.7e-34 Score=243.46 Aligned_cols=224 Identities=25% Similarity=0.417 Sum_probs=173.8
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
|++|.+++.++.+.+++++++|+||+|++.+++ ....+..++...+ ...+++++|||+++........+. .+
T Consensus 113 ~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~-~~~~~~~~~~~~~--~~~~~~~~SAT~~~~~~~~~~~~~-----~~ 184 (337)
T 2z0m_A 113 PGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMG-FIDDIKIILAQTS--NRKITGLFSATIPEEIRKVVKDFI-----TN 184 (337)
T ss_dssp HHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTT-CHHHHHHHHHHCT--TCSEEEEEESCCCHHHHHHHHHHS-----CS
T ss_pred HHHHHHHHHcCCcchhhCcEEEEEChHHhhccc-cHHHHHHHHhhCC--cccEEEEEeCcCCHHHHHHHHHhc-----CC
Confidence 678999999999999999999999999988777 4477777777664 678999999999987654443222 12
Q ss_pred eeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCc
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSD 160 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (269)
+..+... ....++.+.+..+....+. ....+....++++||||++++.++.+ .+.|. .
T Consensus 185 ~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lvf~~~~~~~~~l----------~~~l~-------~ 242 (337)
T 2z0m_A 185 YEEIEAC---IGLANVEHKFVHVKDDWRS--KVQALRENKDKGVIVFVRTRNRVAKL----------VRLFD-------N 242 (337)
T ss_dssp CEEEECS---GGGGGEEEEEEECSSSSHH--HHHHHHTCCCSSEEEECSCHHHHHHH----------HTTCT-------T
T ss_pred ceeeecc---cccCCceEEEEEeChHHHH--HHHHHHhCCCCcEEEEEcCHHHHHHH----------HHHhh-------h
Confidence 2222211 2234466666666554432 33566666778999999998865553 22222 4
Q ss_pred eEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEe
Q 024287 161 VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSI 240 (269)
Q Consensus 161 v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~ 240 (269)
+..+||+|+..+|.++++.|++|+.++||||+++++|+|+|++++||+++.|.+..+|.||+||+||.| ..|.++.+
T Consensus 243 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g---~~g~~~~~ 319 (337)
T 2z0m_A 243 AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMG---RKGEAITF 319 (337)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGG---CCEEEEEE
T ss_pred hhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCC---CCceEEEE
Confidence 778999999999999999999999999999999999999999999999999999999999999999998 78999999
Q ss_pred cCchhHHHHHHHHHHhcC
Q 024287 241 ITSEELFVLQRYENELKF 258 (269)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~ 258 (269)
+. .+...++.+++.++.
T Consensus 320 ~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 320 IL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp ES-SCHHHHHHHC-----
T ss_pred Ee-CcHHHHHHHHHHhcc
Confidence 98 888888888776653
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.4e-33 Score=254.99 Aligned_cols=224 Identities=15% Similarity=0.150 Sum_probs=166.1
Q ss_pred hhHHHHhCceecCcccEEEEeccccccCCch-hhhHHHH--HHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 4 LCQLIEKHIFKLESVQVLVIDEVDFLFNSSK-QVSSLKK--LLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 4 l~~~l~~~~~~l~~~~~lViDE~~~l~~~~~-~~~~i~~--i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
+.+.+.+ ...+++++++||||||++.++|. +++.+.. .+... .++.|++++|||+++.+..... ..+....
T Consensus 153 ~~~~l~~-~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~--~~~~~ii~lSAT~~~~v~~~i~---~~l~~~~ 226 (591)
T 2v1x_A 153 FMSRLEK-AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ--FPNASLIGLTATATNHVLTDAQ---KILCIEK 226 (591)
T ss_dssp HHHHHHH-HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH--CTTSEEEEEESSCCHHHHHHHH---HHTTCCS
T ss_pred HHHHHHh-hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHh--CCCCcEEEEecCCCHHHHHHHH---HHhCCCC
Confidence 3444443 55788999999999999998872 3344333 22222 2579999999999987543221 2222223
Q ss_pred eeEEeecCcccCCCcceeEEEEecC--cchHHHHHHHHhhc-CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGK--KMKYQTLLSLIQSD-APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG 157 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~--~~k~~~l~~ll~~~-~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (269)
...+... ....++...+..... ..+...+.+++... .++++||||+|++.++. +++.|.+.
T Consensus 227 ~~~~~~~---~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~----------la~~L~~~--- 290 (591)
T 2v1x_A 227 CFTFTAS---FNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQ----------VTVSLQNL--- 290 (591)
T ss_dssp CEEEECC---CCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHH----------HHHHHHHT---
T ss_pred cEEEecC---CCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHH----------HHHHHHHC---
Confidence 2222221 122334333333222 34566777777643 56899999999997554 77888776
Q ss_pred CCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEE
Q 024287 158 SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTV 237 (269)
Q Consensus 158 ~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~ 237 (269)
++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+.++|+||+||+||.| ..|.|
T Consensus 291 g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G---~~g~~ 367 (591)
T 2v1x_A 291 GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDD---MKADC 367 (591)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTS---SCEEE
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCC---CCceE
Confidence 688999999999999999999999999999999999999999999999999999999999999999999998 78999
Q ss_pred EEecCchhHHHHHHH
Q 024287 238 TSIITSEELFVLQRY 252 (269)
Q Consensus 238 ~~~~~~~~~~~~~~~ 252 (269)
+.++++.|...+..+
T Consensus 368 i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 368 ILYYGFGDIFRISSM 382 (591)
T ss_dssp EEEECHHHHHHHHHH
T ss_pred EEEEChHHHHHHHHH
Confidence 999999887765543
No 18
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=100.00 E-value=5e-32 Score=206.59 Aligned_cols=158 Identities=28% Similarity=0.406 Sum_probs=145.4
Q ss_pred cCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCCh
Q 024287 91 PLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170 (269)
Q Consensus 91 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~ 170 (269)
..+.++.|.++.++.+.|...|.+++....++++||||++++.++ .+.+.|.+. ++.+..+||+|++
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~----------~l~~~L~~~---~~~~~~~hg~~~~ 71 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVN----------QLTDELDDL---GYPCDKIHGGMIQ 71 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHH----------HHHHHHHHT---TCCEEEECTTSCH
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHH----------HHHHHHHHc---CCcEEEEeCCCCH
Confidence 345679999999999999999999999888889999999998744 477778776 6889999999999
Q ss_pred hHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHH
Q 024287 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQ 250 (269)
Q Consensus 171 ~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~ 250 (269)
.+|..+++.|++|+.++||||+++++|+|+|++++||+||+|.++.+|+||+||+||.| ..|.++.++++.+...+.
T Consensus 72 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g---~~g~~~~~~~~~~~~~~~ 148 (163)
T 2hjv_A 72 EDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAG---NKGKAISFVTAFEKRFLA 148 (163)
T ss_dssp HHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTT---CCEEEEEEECGGGHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCC---CCceEEEEecHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 789999999999999999
Q ss_pred HHHHHhcCcccccc
Q 024287 251 RYENELKFKSEELT 264 (269)
Q Consensus 251 ~~~~~~~~~~~~~~ 264 (269)
.+++.++.++++++
T Consensus 149 ~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 149 DIEEYIGFEIQKIE 162 (163)
T ss_dssp HHHHHHTSCCEECC
T ss_pred HHHHHHCCCcCccC
Confidence 99999999887653
No 19
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.6e-33 Score=241.86 Aligned_cols=229 Identities=17% Similarity=0.244 Sum_probs=169.8
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccC-----------CchhhhH-HHHHHhhhc---------cCCCccEEEEec
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFN-----------SSKQVSS-LKKLLASYS---------SCNNRQTVFASA 59 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~-----------~~~~~~~-i~~i~~~~~---------~~~~~q~i~~SA 59 (269)
||+|.+++.. +.+++++++|+||+|++.+ .++ .+. +..++..++ ...+.|++++||
T Consensus 125 p~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SA 201 (414)
T 3oiy_A 125 TQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGI-PEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSA 201 (414)
T ss_dssp HHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTC-CHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSC
T ss_pred HHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcCC-cHHHHHHHHHhcccchhhhhcccCCCceEEEEec
Confidence 6888888774 7788999999999997654 332 233 666666542 126789999999
Q ss_pred c-CCchhh-HHHHHHhhhcccCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhh
Q 024287 60 S-IPQHRR-FLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKK 137 (269)
Q Consensus 60 T-l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~ 137 (269)
| .|..+. .+...+. .+..........++.+.+..+ .+...+.++++.. ++++||||++++.|+.
T Consensus 202 T~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~- 267 (414)
T 3oiy_A 202 TAKPRGIRPLLFRDLL---------NFTVGRLVSVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQTEEEGKE- 267 (414)
T ss_dssp CSSCCSSTTHHHHHHH---------SCCSSCCCCCCCSEEEEEESS---CCHHHHHHHHHHH-CSSEEEEESSHHHHHH-
T ss_pred CCCcchhHHHHHHHhh---------ccCcCccccccccchheeecc---CHHHHHHHHHHHc-CCCEEEEECCHHHHHH-
Confidence 9 555543 2222111 122233344455677776655 4666777777773 4899999999987544
Q ss_pred cCCCCchHHHHHHHhhhcCCCCceE-EecccCChhHHHHHHHHHhcCCccEEEE----eccccccCCCCC-CCeEEEecC
Q 024287 138 AGNAPSTTLLVDFLSNSYKGSSDVL-LLEEEMNFNSRAASLLEVRQGGGYLLVS----TDIAARGIDLPE-TTHIYNFDL 211 (269)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~v~-~~h~~~~~~~r~~~~~~f~~~~~~iLv~----T~~~~~Gidi~~-~~~Vi~~~~ 211 (269)
+++.|.+. ++.+. .+||. +|. ++.|++|+.++||| |+++++|+|+|+ +++||+||+
T Consensus 268 ---------l~~~L~~~---~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~ 329 (414)
T 3oiy_A 268 ---------LYEYLKRF---KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGT 329 (414)
T ss_dssp ---------HHHHHHHT---TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESC
T ss_pred ---------HHHHHHHc---CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECC
Confidence 77788776 67887 89985 444 99999999999999 999999999999 999999999
Q ss_pred C--CCccccccccccCCCCCCCC-CCeEEEEecCchhHHHHHHHHHHhc--Ccccccccc
Q 024287 212 P--RSAIDYLHRAGRTGRKPFSD-EKWTVTSIITSEELFVLQRYENELK--FKSEELTLQ 266 (269)
Q Consensus 212 p--~~~~~~~qr~GR~gR~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 266 (269)
| .+..+|+||+||+||.|.++ ..|.++.++ .+...+..+++.++ .+++..+++
T Consensus 330 p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~~~~~~~ 387 (414)
T 3oiy_A 330 PSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEA 387 (414)
T ss_dssp CTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEGG
T ss_pred CCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccccccccccc
Confidence 9 99999999999999998432 479999999 56666777888777 555554443
No 20
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=100.00 E-value=9.4e-32 Score=205.52 Aligned_cols=157 Identities=27% Similarity=0.419 Sum_probs=139.8
Q ss_pred CcceeEEEEecCcc-hHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhH
Q 024287 94 SCLHHRFVICGKKM-KYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172 (269)
Q Consensus 94 ~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~ 172 (269)
.++.|.|+.++..+ |...+.++++....+++||||++++.++ .+++.|.+. ++.+..+||+|++.+
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~----------~l~~~L~~~---~~~~~~~~~~~~~~~ 68 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVE----------ELTTKLRND---KFTVSAIYSDLPQQE 68 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHH----------HHHHHHHHT---TCCEEEECTTSCHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHH----------HHHHHHHHc---CCCEEEEECCCCHHH
Confidence 46889999998877 9999999999888899999999998744 477777765 678999999999999
Q ss_pred HHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHH
Q 024287 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRY 252 (269)
Q Consensus 173 r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~ 252 (269)
|..+++.|++|+.++||||+++++|+|+|++++||++|+|.+..+|.||+||+||.| ..|.++.++++.+...+..+
T Consensus 69 r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g---~~g~~~~~~~~~~~~~~~~~ 145 (165)
T 1fuk_A 69 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG---RKGVAINFVTNEDVGAMREL 145 (165)
T ss_dssp HHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC--------CEEEEEEETTTHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCC---CCceEEEEEcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 78999999999999999999
Q ss_pred HHHhcCcccccccc
Q 024287 253 ENELKFKSEELTLQ 266 (269)
Q Consensus 253 ~~~~~~~~~~~~~~ 266 (269)
++.++.+++++|.+
T Consensus 146 ~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 146 EKFYSTQIEELPSD 159 (165)
T ss_dssp HHHSSCCCEECCSC
T ss_pred HHHHccCccccCcc
Confidence 99999999998875
No 21
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.2e-32 Score=208.93 Aligned_cols=160 Identities=29% Similarity=0.460 Sum_probs=143.7
Q ss_pred CCCcceeEEEEecCcc-hHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCCh
Q 024287 92 LPSCLHHRFVICGKKM-KYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170 (269)
Q Consensus 92 ~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~ 170 (269)
.+.++.|.|+.++... |...+.++++....+++||||++++.++ .+++.|.+. ++.+..+||+|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~----------~l~~~L~~~---~~~~~~~~g~~~~ 70 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAK----------WLTVEMIQD---GHQVSLLSGELTV 70 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHH----------HHHHHHHTT---TCCEEEECSSCCH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHH----------HHHHHHHHc---CCcEEEEeCCCCH
Confidence 4567999999998765 9999999999888889999999998744 477778775 6789999999999
Q ss_pred hHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCC------CCccccccccccCCCCCCCCCCeEEEEecCch
Q 024287 171 NSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLP------RSAIDYLHRAGRTGRKPFSDEKWTVTSIITSE 244 (269)
Q Consensus 171 ~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p------~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~ 244 (269)
.+|..+++.|++|..++||||+++++|+|+|++++||+||+| .+..+|+||+||+||.| ..|.++.++++.
T Consensus 71 ~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g---~~g~~~~~~~~~ 147 (175)
T 2rb4_A 71 EQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFG---KKGLAFNMIEVD 147 (175)
T ss_dssp HHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC-------CCEEEEEEECGG
T ss_pred HHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCC---CCceEEEEEccc
Confidence 999999999999999999999999999999999999999999 99999999999999998 789999999999
Q ss_pred hHHHHHHHHHHhcCccccccccc
Q 024287 245 ELFVLQRYENELKFKSEELTLQT 267 (269)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~ 267 (269)
+...+..+++.++..++++|++.
T Consensus 148 ~~~~~~~i~~~~~~~~~~~~~~~ 170 (175)
T 2rb4_A 148 ELPSLMKIQDHFNSSIKQLNAED 170 (175)
T ss_dssp GHHHHHHHHHHHTCCCEEECSSC
T ss_pred hHHHHHHHHHHhcCcccccCCch
Confidence 99999999999999999998764
No 22
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.98 E-value=5.4e-32 Score=208.10 Aligned_cols=158 Identities=21% Similarity=0.335 Sum_probs=143.2
Q ss_pred CCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhH
Q 024287 93 PSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172 (269)
Q Consensus 93 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~ 172 (269)
+.++.|+++.++...|...+.++++....+++||||++++.+ ..+++.|.+. ++.+..+||+|++.+
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~----------~~l~~~L~~~---~~~~~~~hg~~~~~~ 69 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC----------IALAQLLVEQ---NFPAIAIHRGMPQEE 69 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHH----------HHHHHHHHHT---TCCEEEECTTSCHHH
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHH----------HHHHHHHHhc---CCCEEEEECCCCHHH
Confidence 467899999999999999999999988888999999999874 4477888776 688999999999999
Q ss_pred HHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCch-hHHHHHH
Q 024287 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSE-ELFVLQR 251 (269)
Q Consensus 173 r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~-~~~~~~~ 251 (269)
|..+++.|++|+.++||||+++++|+|+|++++||+||+|.++.+|+||+||+||.| ..|.+++|+++. +...+..
T Consensus 70 r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g---~~g~~~~~~~~~~~~~~~~~ 146 (172)
T 1t5i_A 70 RLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG---TKGLAITFVSDENDAKILND 146 (172)
T ss_dssp HHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGG---CCCEEEEEECSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCC---CCcEEEEEEcChhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 789999999875 6788999
Q ss_pred HHHHhcCcccccccc
Q 024287 252 YENELKFKSEELTLQ 266 (269)
Q Consensus 252 ~~~~~~~~~~~~~~~ 266 (269)
+++.++.+++++|.+
T Consensus 147 l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 147 VQDRFEVNISELPDE 161 (172)
T ss_dssp HHHHHCCCEEECC--
T ss_pred HHHHHhcchhhCChh
Confidence 999999999998854
No 23
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.97 E-value=1.2e-30 Score=207.17 Aligned_cols=157 Identities=24% Similarity=0.348 Sum_probs=142.9
Q ss_pred cceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHH
Q 024287 95 CLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174 (269)
Q Consensus 95 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~ 174 (269)
.+.+.++.++...|...+.+++....++++||||++++.++ .+.+.|.+. ++.+..+||+|++.+|.
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~----------~l~~~L~~~---~~~~~~lhg~~~~~~r~ 71 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETE----------EIAQGLLRL---GHPAQALHGDLSQGERE 71 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHH----------HHHHHHHHH---TCCEEEECSSSCHHHHH
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHH----------HHHHHHHHc---CCCEEEEECCCCHHHHH
Confidence 45677788888999999999999888899999999998744 477777776 68899999999999999
Q ss_pred HHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHHHH
Q 024287 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYEN 254 (269)
Q Consensus 175 ~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~~~ 254 (269)
.+++.|++|..+|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.| ..|.++.++++.+...+..+++
T Consensus 72 ~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g---~~g~~~~l~~~~~~~~~~~i~~ 148 (212)
T 3eaq_A 72 RVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAG---RGGRVVLLYGPRERRDVEALER 148 (212)
T ss_dssp HHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC-----BEEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCC---CCCeEEEEEchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 7899999999999999999999
Q ss_pred HhcCccccccccc
Q 024287 255 ELKFKSEELTLQT 267 (269)
Q Consensus 255 ~~~~~~~~~~~~~ 267 (269)
.++..+++++.++
T Consensus 149 ~~~~~~~~~~~~~ 161 (212)
T 3eaq_A 149 AVGRRFKRVNPPT 161 (212)
T ss_dssp HHSSCCEECCCCC
T ss_pred HhcCcCeecCCCC
Confidence 9999988887654
No 24
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.97 E-value=2.8e-30 Score=239.62 Aligned_cols=225 Identities=18% Similarity=0.210 Sum_probs=155.4
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||++..+++++...++++++||+||+|.+.+.+ ....++.++..++ +.|++++|||+++. ..+...+. .+
T Consensus 129 pe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~-~~~~l~~i~~~~~---~~~ii~lSATl~n~-~~~~~~l~-----~~ 198 (715)
T 2va8_A 129 YEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE-RGPVVESVTIRAK---RRNLLALSATISNY-KQIAKWLG-----AE 198 (715)
T ss_dssp HHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT-THHHHHHHHHHHH---TSEEEEEESCCTTH-HHHHHHHT-----CE
T ss_pred HHHHHHHHhCChhHhhccCEEEEechhhcCCcc-cchHHHHHHHhcc---cCcEEEEcCCCCCH-HHHHHHhC-----CC
Confidence 689999999988889999999999999877555 4567777777764 79999999999874 33333221 11
Q ss_pred eeEEeecCcccCCCcceeE------------EEEec--------CcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCC
Q 024287 81 VVHVHVNAIKPLPSCLHHR------------FVICG--------KKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGN 140 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~------------~~~~~--------~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~ 140 (269)
....... + ..+... ....+ ...+...+.+.+. .++++||||++++.++.++..
T Consensus 199 ~~~~~~r---~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~ 271 (715)
T 2va8_A 199 PVATNWR---P--VPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALK 271 (715)
T ss_dssp EEECCCC---S--SCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHH
T ss_pred ccCCCCC---C--CCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHH
Confidence 1111100 0 011111 11111 1334445555553 458999999999987775322
Q ss_pred CCch-----------HHH--------------HHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecccc
Q 024287 141 APST-----------TLL--------------VDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAA 195 (269)
Q Consensus 141 ~~~~-----------~~~--------------~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~ 195 (269)
+... ..+ ...|.+.+ ...+.++||+|++.+|..+++.|++|..+|||||++++
T Consensus 272 L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~--~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~ 349 (715)
T 2va8_A 272 IANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLI--SKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLA 349 (715)
T ss_dssp HHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHH--TTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGG
T ss_pred HHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHH--hcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHh
Confidence 1110 000 00111111 13589999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEE----ec-------CCCCccccccccccCCCCCCCCCCeEEEEecCchh
Q 024287 196 RGIDLPETTHIYN----FD-------LPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEE 245 (269)
Q Consensus 196 ~Gidi~~~~~Vi~----~~-------~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~ 245 (269)
+|+|+|++++||+ || .|.+..+|.||+||+||.|.+ ..|.|+.++++.+
T Consensus 350 ~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~-~~G~~~~l~~~~~ 409 (715)
T 2va8_A 350 AGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFD-QIGESIVVVRDKE 409 (715)
T ss_dssp GSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTC-SCEEEEEECSCGG
T ss_pred cccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCC-CCceEEEEeCCch
Confidence 9999999999999 99 899999999999999999854 6899999998765
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.7e-31 Score=251.86 Aligned_cols=233 Identities=15% Similarity=0.211 Sum_probs=161.4
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||+|.+++.++...++++++|||||+|++.+++ +...+..++..++ .+.|+++||||+|+..+ +...+ ......+
T Consensus 274 pe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~-rg~~~e~ii~~l~--~~~qvl~lSATipn~~e-~a~~l-~~~~~~~ 348 (1108)
T 3l9o_A 274 TEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE-RGVVWEETIILLP--DKVRYVFLSATIPNAME-FAEWI-CKIHSQP 348 (1108)
T ss_dssp HHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHH-HHHHHHHHHHHSC--TTSEEEEEECSCSSCHH-HHHHH-HHHTCSC
T ss_pred hHHHHHHHHcCccccccCCEEEEhhhhhccccc-hHHHHHHHHHhcC--CCceEEEEcCCCCCHHH-HHHHH-HhhcCCC
Confidence 789999999999999999999999999988777 4477788887775 78999999999988744 22221 1111112
Q ss_pred eeEEeecCcccCCCcceeEEEEec---------C----------------------------------------------
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICG---------K---------------------------------------------- 105 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~---------~---------------------------------------------- 105 (269)
..+...... +..+.++++... .
T Consensus 349 -~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (1108)
T 3l9o_A 349 -CHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDA 425 (1108)
T ss_dssp -EEEEEECCC--SSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------C
T ss_pred -eEEEecCCC--cccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 222222111 112233222110 0
Q ss_pred cchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHH--------HHHH--------------------hhhcCC
Q 024287 106 KMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLL--------VDFL--------------------SNSYKG 157 (269)
Q Consensus 106 ~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~--------~~~l--------------------~~~~~~ 157 (269)
..+...+...+.....+++||||+++..|+.++..+...... ...+ ....
T Consensus 426 ~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l-- 503 (1108)
T 3l9o_A 426 KGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLL-- 503 (1108)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHH--
T ss_pred hhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhh--
Confidence 112233444444555679999999999988866544332111 0000 0000
Q ss_pred CCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCC--------CccccccccccCCCCC
Q 024287 158 SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPR--------SAIDYLHRAGRTGRKP 229 (269)
Q Consensus 158 ~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~--------~~~~~~qr~GR~gR~~ 229 (269)
...+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+++.|. +..+|+||+||+||.|
T Consensus 504 ~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G 583 (1108)
T 3l9o_A 504 RRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583 (1108)
T ss_dssp HHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSS
T ss_pred hcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCC
Confidence 01288999999999999999999999999999999999999999999999877643 5566999999999998
Q ss_pred CCCCCeEEEEecCch
Q 024287 230 FSDEKWTVTSIITSE 244 (269)
Q Consensus 230 ~~~~~g~~~~~~~~~ 244 (269)
.+ ..|.++.++++.
T Consensus 584 ~d-~~G~~ill~~~~ 597 (1108)
T 3l9o_A 584 LD-DRGIVIMMIDEK 597 (1108)
T ss_dssp SC-SSEEEEEEECCC
T ss_pred CC-CceEEEEEecCC
Confidence 65 689999998865
No 26
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=6.5e-31 Score=205.18 Aligned_cols=169 Identities=21% Similarity=0.357 Sum_probs=136.5
Q ss_pred CceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCC
Q 024287 79 SDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGS 158 (269)
Q Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (269)
.++..+.+........++.+.++.++...|...|.+++... ++++||||+++..++ .+++.|... +
T Consensus 13 ~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~----------~l~~~L~~~---g 78 (191)
T 2p6n_A 13 LGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVD----------AIHEYLLLK---G 78 (191)
T ss_dssp ---------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHH----------HHHHHHHHH---T
T ss_pred CCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHH----------HHHHHHHHc---C
Confidence 35566677666677788999999999999999999999875 468999999998744 477788776 6
Q ss_pred CceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEE
Q 024287 159 SDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVT 238 (269)
Q Consensus 159 ~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~ 238 (269)
+.+..+||+|++.+|.++++.|++|+.++||||+++++|+|+|++++||+||+|.++.+|+||+||+||.| ..|.++
T Consensus 79 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g---~~g~~i 155 (191)
T 2p6n_A 79 VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSG---NTGIAT 155 (191)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC------CCEEE
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCC---CCcEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred EecCch-hHHHHHHHHHHhcCcccccc
Q 024287 239 SIITSE-ELFVLQRYENELKFKSEELT 264 (269)
Q Consensus 239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~ 264 (269)
+|+++. +...+..+++.++...+++|
T Consensus 156 ~l~~~~~~~~~~~~l~~~l~~~~~~~p 182 (191)
T 2p6n_A 156 TFINKACDESVLMDLKALLLEAKQKVP 182 (191)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTTCCCC
T ss_pred EEEcCchhHHHHHHHHHHHHHccCcCC
Confidence 999875 77888888888876666665
No 27
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-30 Score=245.28 Aligned_cols=243 Identities=17% Similarity=0.232 Sum_probs=169.7
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||+|.+++.++...++++++|||||+|.+.+.+ ....++.++..++ .+.|++++|||+|+..+ +...+. .....+
T Consensus 176 pe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~-rg~~~e~il~~l~--~~~~il~LSATi~n~~e-~a~~l~-~~~~~~ 250 (1010)
T 2xgj_A 176 TEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE-RGVVWEETIILLP--DKVRYVFLSATIPNAME-FAEWIC-KIHSQP 250 (1010)
T ss_dssp HHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT-THHHHHHHHHHSC--TTCEEEEEECCCTTHHH-HHHHHH-HHHTSC
T ss_pred HHHHHHHHHcCcchhhcCCEEEEechhhhcccc-hhHHHHHHHHhcC--CCCeEEEEcCCCCCHHH-HHHHHH-hhcCCC
Confidence 678999999999999999999999999988776 3456677777664 78999999999998654 222211 111112
Q ss_pred eeEEeecCcccCCCcceeEEEEec---------C----------------------------------------------
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICG---------K---------------------------------------------- 105 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~---------~---------------------------------------------- 105 (269)
..+...... +..+.++++... .
T Consensus 251 -~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~ 327 (1010)
T 2xgj_A 251 -CHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDA 327 (1010)
T ss_dssp -EEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-----------------------------
T ss_pred -eEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccc
Confidence 222222111 122333333211 0
Q ss_pred cchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchH--------HHHHHHhhh---cCC---------------CC
Q 024287 106 KMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTT--------LLVDFLSNS---YKG---------------SS 159 (269)
Q Consensus 106 ~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~--------~~~~~l~~~---~~~---------------~~ 159 (269)
......+...+......++||||+++..|+.++..+.... .+...+.+. +.. ..
T Consensus 328 ~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 407 (1010)
T 2xgj_A 328 KGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRR 407 (1010)
T ss_dssp -CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhC
Confidence 1122334445555556799999999999988776654411 011111000 000 12
Q ss_pred ceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEE----ecC----CCCccccccccccCCCCCCC
Q 024287 160 DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYN----FDL----PRSAIDYLHRAGRTGRKPFS 231 (269)
Q Consensus 160 ~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~----~~~----p~~~~~~~qr~GR~gR~~~~ 231 (269)
.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+ ||. |.++.+|.||+||+||.|.+
T Consensus 408 gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d 487 (1010)
T 2xgj_A 408 GIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLD 487 (1010)
T ss_dssp TEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTC
T ss_pred CeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCC
Confidence 3889999999999999999999999999999999999999999999999 998 88999999999999999854
Q ss_pred CCCeEEEEecCch-hHHHHHHH
Q 024287 232 DEKWTVTSIITSE-ELFVLQRY 252 (269)
Q Consensus 232 ~~~g~~~~~~~~~-~~~~~~~~ 252 (269)
..|.|+.++++. +...+.++
T Consensus 488 -~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 488 -DRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp -SSEEEEEEECSCCCHHHHHHH
T ss_pred -CceEEEEEECCCCCHHHHHHH
Confidence 579999999865 44444443
No 28
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.97 E-value=1.2e-30 Score=242.23 Aligned_cols=240 Identities=18% Similarity=0.181 Sum_probs=167.3
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||++..+++++...+++++++|+||+|.+.+.+ ....+..++..++ .+.|++++|||+++. ..+...+ ...
T Consensus 122 pe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~-r~~~~~~ll~~l~--~~~~ii~lSATl~n~-~~~~~~l-----~~~ 192 (720)
T 2zj8_A 122 AEKFDSLLRHGSSWIKDVKILVADEIHLIGSRD-RGATLEVILAHML--GKAQIIGLSATIGNP-EELAEWL-----NAE 192 (720)
T ss_dssp HHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT-THHHHHHHHHHHB--TTBEEEEEECCCSCH-HHHHHHT-----TEE
T ss_pred HHHHHHHHHcChhhhhcCCEEEEECCcccCCCc-ccHHHHHHHHHhh--cCCeEEEEcCCcCCH-HHHHHHh-----CCc
Confidence 688999999988889999999999999887655 4577888888876 389999999999874 3333222 111
Q ss_pred eeEEeecCcccCCCcceeEEE------Eec-----CcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchH----
Q 024287 81 VVHVHVNAIKPLPSCLHHRFV------ICG-----KKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTT---- 145 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~------~~~-----~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~---- 145 (269)
....... +..+...+. ... ...+...+.+.+. .++++||||++++.++.++..+....
T Consensus 193 ~~~~~~r-----p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~ 265 (720)
T 2zj8_A 193 LIVSDWR-----PVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLL 265 (720)
T ss_dssp EEECCCC-----SSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGS
T ss_pred ccCCCCC-----CCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhc
Confidence 1111110 111111111 111 2334555555554 35899999999999887543221100
Q ss_pred ------HHH------------HHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEE
Q 024287 146 ------LLV------------DFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIY 207 (269)
Q Consensus 146 ------~~~------------~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi 207 (269)
.+. ..|.+.+ ...+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||
T Consensus 266 ~~~~~~~~~~~~~~i~~~~~~~~l~~~~--~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI 343 (720)
T 2zj8_A 266 TKPEIRALNELADSLEENPTNEKLAKAI--RGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVII 343 (720)
T ss_dssp CHHHHHHHHHHHHTSCSCHHHHHHHHHH--TTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEE
T ss_pred ChhhHHHHHHHHHHHhcccchHHHHHHH--hcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEE
Confidence 000 0011111 13589999999999999999999999999999999999999999999999
Q ss_pred E----ec----CCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHHHHHhcCccc
Q 024287 208 N----FD----LPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYENELKFKSE 261 (269)
Q Consensus 208 ~----~~----~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (269)
+ || .|.+..+|.||+||+||.|.+ ..|.|+.++++.+... .+++.+..+.+
T Consensus 344 ~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~-~~G~~~~l~~~~~~~~--~~~~~~~~~~~ 402 (720)
T 2zj8_A 344 RDIWRYSDFGMERIPIIEVHQMLGRAGRPKYD-EVGEGIIVSTSDDPRE--VMNHYIFGKPE 402 (720)
T ss_dssp CCSEECCSSSCEECCHHHHHHHHTTBCCTTTC-SEEEEEEECSSSCHHH--HHHHHTTSCCC
T ss_pred cCCeeecCCCCccCCHHHHHHHHhhcCCCCCC-CCceEEEEecCccHHH--HHHHHhcCCCC
Confidence 8 76 589999999999999999854 6899999999877332 23344443333
No 29
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.97 E-value=6.8e-31 Score=204.18 Aligned_cols=161 Identities=25% Similarity=0.383 Sum_probs=130.3
Q ss_pred cccCCCcceeEEEEecCcchHHHHHHHHhhc-CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEeccc
Q 024287 89 IKPLPSCLHHRFVICGKKMKYQTLLSLIQSD-APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEE 167 (269)
Q Consensus 89 ~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~ 167 (269)
....+.++.|.++.++...|...|.++++.. .++++||||++++.++ .+++.|... ++.+..+||+
T Consensus 13 ~~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~----------~l~~~L~~~---g~~~~~lhg~ 79 (185)
T 2jgn_A 13 QGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGAD----------SLEDFLYHE---GYACTSIHGD 79 (185)
T ss_dssp ---CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHH----------HHHHHHHHT---TCCEEEEC--
T ss_pred cCCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHH----------HHHHHHHHc---CCceEEEeCC
Confidence 3455778999999999999999999999876 4689999999998744 477777765 6889999999
Q ss_pred CChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHH
Q 024287 168 MNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELF 247 (269)
Q Consensus 168 ~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~ 247 (269)
|++.+|..+++.|++|+.++||||+++++|+|+|++++||++|+|.++.+|+||+||+||.| ..|.+++|+++.+..
T Consensus 80 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g---~~g~~~~~~~~~~~~ 156 (185)
T 2jgn_A 80 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG---NLGLATSFFNERNIN 156 (185)
T ss_dssp ------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTT---SCEEEEEEECGGGGG
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCC---CCcEEEEEEchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 789999999999999
Q ss_pred HHHHHHHHhcCccccccc
Q 024287 248 VLQRYENELKFKSEELTL 265 (269)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~ 265 (269)
.+..+++.++...+++|.
T Consensus 157 ~~~~l~~~l~~~~~~~~~ 174 (185)
T 2jgn_A 157 ITKDLLDLLVEAKQEVPS 174 (185)
T ss_dssp GHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHhccCCCCH
Confidence 999999998777776663
No 30
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.97 E-value=1.5e-30 Score=240.83 Aligned_cols=223 Identities=18% Similarity=0.197 Sum_probs=159.1
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhc-cCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS-SCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~-~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
||++.++++++...+++++++|+||+|.+.+++ ....+..++..++ ...+.|++++|||+++. ..+.+. ...
T Consensus 122 pe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~-r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~-~~~~~~-----l~~ 194 (702)
T 2p6r_A 122 SEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK-RGATLEILVTKMRRMNKALRVIGLSATAPNV-TEIAEW-----LDA 194 (702)
T ss_dssp HHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT-THHHHHHHHHHHHHHCTTCEEEEEECCCTTH-HHHHHH-----TTC
T ss_pred HHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC-cccHHHHHHHHHHhcCcCceEEEECCCcCCH-HHHHHH-----hCC
Confidence 789999999988889999999999999887755 3355555554442 23689999999999873 333322 222
Q ss_pred ceeEEeecCcccCCCcceeEEE------EecCc-------chHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHH
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFV------ICGKK-------MKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTL 146 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~------~~~~~-------~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~ 146 (269)
+....... +..+...+. ..... .+...+.+.+. .++++||||++++.++.++. .
T Consensus 195 ~~~~~~~r-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~------~ 261 (702)
T 2p6r_A 195 DYYVSDWR-----PVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAV------K 261 (702)
T ss_dssp EEEECCCC-----SSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHH------H
T ss_pred CcccCCCC-----CccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHH------H
Confidence 21111111 111111111 11111 14555555553 46899999999999877532 2
Q ss_pred HHHHHh-------------------------hhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCC
Q 024287 147 LVDFLS-------------------------NSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLP 201 (269)
Q Consensus 147 ~~~~l~-------------------------~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~ 201 (269)
+.+.+. +.+ ...+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|
T Consensus 262 L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip 339 (702)
T 2p6r_A 262 LSAITAKYVENEGLEKAILEENEGEMSRKLAECV--RKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLP 339 (702)
T ss_dssp HHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHH--HTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCC
T ss_pred HHHHHHhhcChHHHHHHHHhhccccccHHHHHHH--hcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCC
Confidence 222111 111 13578899999999999999999999999999999999999999
Q ss_pred CCCeEEE----ec---CCCCccccccccccCCCCCCCCCCeEEEEecCchhH
Q 024287 202 ETTHIYN----FD---LPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEEL 246 (269)
Q Consensus 202 ~~~~Vi~----~~---~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~ 246 (269)
++++||+ || .|.+..+|.||+||+||.|.+ ..|.|+.++++.+.
T Consensus 340 ~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~-~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 340 ARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMD-ERGEAIIIVGKRDR 390 (702)
T ss_dssp BSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTC-SCEEEEEECCGGGH
T ss_pred ceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCC-CCceEEEEecCccH
Confidence 9999999 66 789999999999999999854 68999999998774
No 31
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.97 E-value=5.7e-30 Score=230.69 Aligned_cols=131 Identities=18% Similarity=0.306 Sum_probs=86.1
Q ss_pred chHHHHHHHHhh----cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC---------CCCceEEecccCChhHH
Q 024287 107 MKYQTLLSLIQS----DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK---------GSSDVLLLEEEMNFNSR 173 (269)
Q Consensus 107 ~k~~~l~~ll~~----~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~v~~~h~~~~~~~r 173 (269)
.|...+.+++.. ....++||||++++.++. +.+.|.+... .+.....+||+|++.+|
T Consensus 371 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~----------l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R 440 (555)
T 3tbk_A 371 PKLRDLYLVLQEEYHLKPETKTILFVKTRALVDA----------LKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQ 440 (555)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHH----------HHHHHHHCGGGTTCCEEECCC---------------
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHH----------HHHHHhhCcCcCceeeeEEEecCCcccccccCHHHH
Confidence 466666666654 356899999999997544 6777765421 12345566779999999
Q ss_pred HHHHHHHhc-CCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHH
Q 024287 174 AASLLEVRQ-GGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRY 252 (269)
Q Consensus 174 ~~~~~~f~~-~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~ 252 (269)
.++++.|++ |+.+|||||+++++|+|+|++++||+||+|.++.+|+||+|| ||. ..|.++.|+++.+......+
T Consensus 441 ~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~----~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 441 KCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA----RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp -----------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT----TSCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC----CCceEEEEEcCCCHHHHHHH
Confidence 999999999 999999999999999999999999999999999999999999 887 57899999998877655444
No 32
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.97 E-value=1.1e-31 Score=235.45 Aligned_cols=217 Identities=15% Similarity=0.174 Sum_probs=142.9
Q ss_pred CchhhHHHHhCcee--------cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHH
Q 024287 1 MGSLCQLIEKHIFK--------LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCI 72 (269)
Q Consensus 1 pgrl~~~l~~~~~~--------l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~ 72 (269)
||++.+++.++.+. +++++++|+||+|++ +.+ ....+..+.... ...+.|+++||||+++....+..
T Consensus 75 p~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~-~~~~~~~~~~~~-~~~~~~~l~~SAT~~~~~~~~~~-- 149 (440)
T 1yks_A 75 GREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPA-SIAARGWAAHRA-RANESATILMTATPPGTSDEFPH-- 149 (440)
T ss_dssp SSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHH-HHHHHHHHHHHH-HTTSCEEEEECSSCTTCCCSSCC--
T ss_pred CccceeeecccchhHhhhCcccccCccEEEEECcccc-Ccc-hHHHHHHHHHHh-ccCCceEEEEeCCCCchhhhhhh--
Confidence 67777766666554 899999999999987 222 212222222222 23679999999999876442211
Q ss_pred hhhcccCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHh
Q 024287 73 QQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS 152 (269)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~ 152 (269)
.+.. +......++...+...+ ..+.+ .+++++|||++++.|+. +++.|.
T Consensus 150 ------~~~~-------------~~~~~~~~~~~~~~~~~-~~l~~-~~~~~lVF~~s~~~a~~----------l~~~L~ 198 (440)
T 1yks_A 150 ------SNGE-------------IEDVQTDIPSEPWNTGH-DWILA-DKRPTAWFLPSIRAANV----------MAASLR 198 (440)
T ss_dssp ------CSSC-------------EEEEECCCCSSCCSSSC-HHHHH-CCSCEEEECSCHHHHHH----------HHHHHH
T ss_pred ------cCCC-------------eeEeeeccChHHHHHHH-HHHHh-cCCCEEEEeCCHHHHHH----------HHHHHH
Confidence 1100 10000111111111111 22222 25799999999997554 777787
Q ss_pred hhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEE-------------------ecCCC
Q 024287 153 NSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYN-------------------FDLPR 213 (269)
Q Consensus 153 ~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~-------------------~~~p~ 213 (269)
+. +..+..+|| .+|.++++.|++|+.+|||||+++++|+|+| +++||+ ++.|.
T Consensus 199 ~~---~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~ 270 (440)
T 1yks_A 199 KA---GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRI 270 (440)
T ss_dssp HT---TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEEC
T ss_pred Hc---CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccccc
Confidence 76 678999999 4678899999999999999999999999999 999986 88999
Q ss_pred CccccccccccCCCCCCCCCCeEEEEec---CchhHHHHHHHHHHhcCccccc
Q 024287 214 SAIDYLHRAGRTGRKPFSDEKWTVTSII---TSEELFVLQRYENELKFKSEEL 263 (269)
Q Consensus 214 ~~~~~~qr~GR~gR~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 263 (269)
+.++|+||+||+||.| +..|.|++++ ++.+...+..+++.+.....++
T Consensus 271 ~~~~~~Qr~GR~GR~g--~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l 321 (440)
T 1yks_A 271 SASSAAQRRGRIGRNP--NRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEV 321 (440)
T ss_dssp CHHHHHHHHTTSSCCT--TCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCC
T ss_pred CHHHHHHhccccCCCC--CCCceEEEEeccCChhhhhhhhhhhHHhccccccc
Confidence 9999999999999974 2689999996 6777777777777664333333
No 33
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=8.3e-30 Score=211.64 Aligned_cols=157 Identities=24% Similarity=0.346 Sum_probs=141.0
Q ss_pred cceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHH
Q 024287 95 CLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRA 174 (269)
Q Consensus 95 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~ 174 (269)
.+.+.++.++...|.+.+.++++...++++||||++++.++ .+++.|.+. ++.+..+||+|++.+|.
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~----------~l~~~L~~~---g~~~~~lhg~l~~~~r~ 68 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETE----------EIAQGLLRL---GHPAQALHGDMSQGERE 68 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHH----------HHHHHHHTT---TCCEEEECSCCCTHHHH
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHH----------HHHHHHHhC---CCCEEEEeCCCCHHHHH
Confidence 46788999999999999999999888899999999998744 477777765 68899999999999999
Q ss_pred HHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHHHH
Q 024287 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYEN 254 (269)
Q Consensus 175 ~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~~~ 254 (269)
.+++.|++|..+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.| ..|.++.|+++.+...+..+++
T Consensus 69 ~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g---~~G~~i~l~~~~e~~~~~~ie~ 145 (300)
T 3i32_A 69 RVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAG---RGGRVVLLYGPRERRDVEALER 145 (300)
T ss_dssp HHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC--------CEEEEEECSSTHHHHHHHHH
T ss_pred HHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCC---CCceEEEEeChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 7899999999999999999999
Q ss_pred HhcCccccccccc
Q 024287 255 ELKFKSEELTLQT 267 (269)
Q Consensus 255 ~~~~~~~~~~~~~ 267 (269)
.++..+++++.++
T Consensus 146 ~~~~~~~~~~~~~ 158 (300)
T 3i32_A 146 AVGRRFKRVNPPT 158 (300)
T ss_dssp HHTCCCEECCCCC
T ss_pred HhCCcceEeCCCC
Confidence 9999998887654
No 34
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.97 E-value=6.4e-30 Score=230.61 Aligned_cols=126 Identities=16% Similarity=0.249 Sum_probs=63.3
Q ss_pred chHHHHHHHHhh----cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhc---------CCCCceEEecccCChhHH
Q 024287 107 MKYQTLLSLIQS----DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY---------KGSSDVLLLEEEMNFNSR 173 (269)
Q Consensus 107 ~k~~~l~~ll~~----~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~v~~~h~~~~~~~r 173 (269)
.|...+.+++.. ..+.++||||++++.++ .+.+.|.+.. ..+.....+||+|++.+|
T Consensus 372 ~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~----------~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R 441 (556)
T 4a2p_A 372 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVS----------ALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQ 441 (556)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHH----------HHHHHHTTCSGGGSCCEEC------------------
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEEccHHHHH----------HHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHH
Confidence 366666667754 45689999999999744 4677776541 113445667889999999
Q ss_pred HHHHHHHhc-CCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHH
Q 024287 174 AASLLEVRQ-GGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELF 247 (269)
Q Consensus 174 ~~~~~~f~~-~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~ 247 (269)
.++++.|++ |+.+|||||+++++|+|+|++++||+||+|.++.+|+||+|| ||. ..|.++.++++.+..
T Consensus 442 ~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~----~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 442 KGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA----AGSKCILVTSKTEVV 511 (556)
T ss_dssp ------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC-------------CCEEEEESCHHHH
T ss_pred HHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC----CCceEEEEEeCcchH
Confidence 999999999 999999999999999999999999999999999999999999 988 578899999887653
No 35
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=3.5e-30 Score=246.33 Aligned_cols=230 Identities=17% Similarity=0.237 Sum_probs=169.1
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccC-----------CchhhhH-HHHHHhhhc---------cCCCccEEEEec
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFN-----------SSKQVSS-LKKLLASYS---------SCNNRQTVFASA 59 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~-----------~~~~~~~-i~~i~~~~~---------~~~~~q~i~~SA 59 (269)
||||.+++.. +.++++++||+||+|++.. +|+. .. +..++..++ ...+.|++++||
T Consensus 182 p~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~-~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SA 258 (1104)
T 4ddu_A 182 TQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIP-EEIIRKAFSTIKQGKIYERPKNLKPGILVVSSA 258 (1104)
T ss_dssp HHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCC-HHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECB
T ss_pred HHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCC-HHHHHHHHHhcccchhhhhhccCCCceEEEEcC
Confidence 7899888875 7889999999999987665 4533 33 677776553 126789999999
Q ss_pred c-CCchhhHHHHHHhhhcccCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhc
Q 024287 60 S-IPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKA 138 (269)
Q Consensus 60 T-l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~ 138 (269)
| .|..+... +...+. .+.+........++.+.+..+ .+...+..++... ++++||||++++.|+.
T Consensus 259 T~~p~~~~~~---~~~~~l-----~i~v~~~~~~~~~i~~~~~~~---~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~-- 324 (1104)
T 4ddu_A 259 TAKPRGIRPL---LFRDLL-----NFTVGRLVSVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQTEEEGKE-- 324 (1104)
T ss_dssp SSCCCSSTTH---HHHHHT-----CCCCCBCCCCCCCEEEEEESC---CCHHHHHHHHHHH-CSSEEEEESSSHHHHH--
T ss_pred CCCcHHHHHH---Hhhcce-----eEEeccCCCCcCCceeEEEec---CHHHHHHHHHHhc-CCCEEEEECcHHHHHH--
Confidence 9 55554321 111111 133333445566777777766 4666777777764 4899999999997544
Q ss_pred CCCCchHHHHHHHhhhcCCCCceE-EecccCChhHHHHHHHHHhcCCccEEEE----eccccccCCCCC-CCeEEEecCC
Q 024287 139 GNAPSTTLLVDFLSNSYKGSSDVL-LLEEEMNFNSRAASLLEVRQGGGYLLVS----TDIAARGIDLPE-TTHIYNFDLP 212 (269)
Q Consensus 139 ~~~~~~~~~~~~l~~~~~~~~~v~-~~h~~~~~~~r~~~~~~f~~~~~~iLv~----T~~~~~Gidi~~-~~~Vi~~~~p 212 (269)
+++.|.+. ++.+. .+||. |.+ ++.|++|+.+|||| |+++++|+|+|+ +++|||||+|
T Consensus 325 --------l~~~L~~~---g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P 387 (1104)
T 4ddu_A 325 --------LYEYLKRF---KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTP 387 (1104)
T ss_dssp --------HHHHHHHT---TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCC
T ss_pred --------HHHHHHhC---CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCC
Confidence 77888776 67887 99993 455 99999999999999 999999999999 9999999999
Q ss_pred C------------------------------------------------------------------------Ccccccc
Q 024287 213 R------------------------------------------------------------------------SAIDYLH 220 (269)
Q Consensus 213 ~------------------------------------------------------------------------~~~~~~q 220 (269)
. +..+|+|
T Consensus 388 ~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYih 467 (1104)
T 4ddu_A 388 SMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQ 467 (1104)
T ss_dssp EEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHH
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhc
Confidence 8 7789999
Q ss_pred ccccCCCCCCCC-CCeEEEEecCchhHHHHHHHHHHhc--Ccccccccc
Q 024287 221 RAGRTGRKPFSD-EKWTVTSIITSEELFVLQRYENELK--FKSEELTLQ 266 (269)
Q Consensus 221 r~GR~gR~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 266 (269)
|+||+||.|..| ..|.+++++ +|...+..+++.++ .+++..|++
T Consensus 468 r~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~~~~~~~ 514 (1104)
T 4ddu_A 468 ASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEA 514 (1104)
T ss_dssp HHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHTCCCEEEGG
T ss_pred ccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhhhccccccccc
Confidence 999999976433 357777777 55666666766664 344544444
No 36
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=2.1e-29 Score=222.97 Aligned_cols=125 Identities=22% Similarity=0.265 Sum_probs=107.6
Q ss_pred chHHHHHHHHhh----cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecc--------cCChhHHH
Q 024287 107 MKYQTLLSLIQS----DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEE--------EMNFNSRA 174 (269)
Q Consensus 107 ~k~~~l~~ll~~----~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~--------~~~~~~r~ 174 (269)
.|...+.+++.. ..+.++||||++++.+ ..+.+.|.+. ++.+..+|| +|+..+|.
T Consensus 343 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~----------~~l~~~L~~~---~~~~~~~~g~~~~~~~~~~~~~~r~ 409 (494)
T 1wp9_A 343 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETA----------KKIVNELVKD---GIKAKRFVGQASKENDRGLSQREQK 409 (494)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSCHHHH----------HHHHHHHHHT---TCCEEEECCSSCC-------CCHHH
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEEccHHHH----------HHHHHHHHHc---CCCcEEEeccccccccccCCHHHHH
Confidence 466777777766 4678999999998864 4477888776 678999999 99999999
Q ss_pred HHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHH
Q 024287 175 ASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFV 248 (269)
Q Consensus 175 ~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~ 248 (269)
++++.|++|..++||||+++++|+|+|++++||++|.|+++..|.||+||+||.| . |.++.++++++.+.
T Consensus 410 ~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g---~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 410 LILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM---P-GRVIILMAKGTRDE 479 (494)
T ss_dssp HHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC---C-SEEEEEEETTSHHH
T ss_pred HHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCC---C-ceEEEEEecCCHHH
Confidence 9999999999999999999999999999999999999999999999999999998 4 89999998875543
No 37
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=7.2e-30 Score=236.30 Aligned_cols=132 Identities=17% Similarity=0.298 Sum_probs=78.3
Q ss_pred cchHHHHHHHHhhc----CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEe--------cccCChhH
Q 024287 106 KMKYQTLLSLIQSD----APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLL--------EEEMNFNS 172 (269)
Q Consensus 106 ~~k~~~l~~ll~~~----~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~--------h~~~~~~~ 172 (269)
..|...+.+++... .++++||||++++.++. +++.|.+... ..+.+..+ ||+|++.+
T Consensus 379 ~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~----------l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~e 448 (696)
T 2ykg_A 379 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDA----------LKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 448 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHH----------HHHHHHHCTTCCSCCEEC-----------------
T ss_pred CHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHH----------HHHHHHhCCCccccceeEEEccCCCccccCCCHHH
Confidence 45777888888765 56799999999997544 7777776521 11566667 66999999
Q ss_pred HHHHHHHHhc-CCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHH
Q 024287 173 RAASLLEVRQ-GGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQR 251 (269)
Q Consensus 173 r~~~~~~f~~-~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~ 251 (269)
|.++++.|++ |+.+|||||+++++|+|+|++++||+||+|.++++|+||+|| ||. ..|.++.++++++......
T Consensus 449 R~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~----~~g~~~~l~~~~~~~~~~~ 523 (696)
T 2ykg_A 449 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA----RGSKCFLLTSNAGVIEKEQ 523 (696)
T ss_dssp ------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC--------------CCCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC----CCceEEEEecCCCHHHHHH
Confidence 9999999998 999999999999999999999999999999999999999999 997 5789999999887755444
Q ss_pred H
Q 024287 252 Y 252 (269)
Q Consensus 252 ~ 252 (269)
+
T Consensus 524 ~ 524 (696)
T 2ykg_A 524 I 524 (696)
T ss_dssp H
T ss_pred H
Confidence 4
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.96 E-value=2.4e-29 Score=238.75 Aligned_cols=242 Identities=14% Similarity=0.176 Sum_probs=166.4
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||+|.+++..+...++++++|||||+|++.+++ ....++.++..++ .+.|++++|||+|+..+. .+.+.... ..+
T Consensus 131 pe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~-~g~~~e~ii~~l~--~~v~iIlLSAT~~n~~ef-~~~l~~~~-~~~ 205 (997)
T 4a4z_A 131 TEILRSMLYRGADLIRDVEFVIFDEVHYVNDQD-RGVVWEEVIIMLP--QHVKFILLSATVPNTYEF-ANWIGRTK-QKN 205 (997)
T ss_dssp HHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTC-TTCCHHHHHHHSC--TTCEEEEEECCCTTHHHH-HHHHHHHH-TCC
T ss_pred HHHHHHHHHhCchhhcCCCEEEEECcccccccc-hHHHHHHHHHhcc--cCCCEEEEcCCCCChHHH-HHHHhccc-CCc
Confidence 789999999999999999999999999998887 4466777777765 789999999999887542 22221100 001
Q ss_pred eeEEeecCcccCCCccee--------------------------------------------------------------
Q 024287 81 VVHVHVNAIKPLPSCLHH-------------------------------------------------------------- 98 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~-------------------------------------------------------------- 98 (269)
...+. .... +..+.+
T Consensus 206 ~~vi~-~~~r--~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg 282 (997)
T 4a4z_A 206 IYVIS-TPKR--PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRD 282 (997)
T ss_dssp EEEEE-CSSC--SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------------------------
T ss_pred eEEEe-cCCC--CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccc
Confidence 11110 0000 000111
Q ss_pred -------------------------------EEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchH--
Q 024287 99 -------------------------------RFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTT-- 145 (269)
Q Consensus 99 -------------------------------~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~-- 145 (269)
++...+...+...+...+......++||||+|++.|+.++..+....
T Consensus 283 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~ 362 (997)
T 4a4z_A 283 GRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFC 362 (997)
T ss_dssp ----------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCC
T ss_pred cccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCC
Confidence 11112234456677788877777899999999999888765554311
Q ss_pred ------HHHHHHhhhcC------------------CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCC
Q 024287 146 ------LLVDFLSNSYK------------------GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLP 201 (269)
Q Consensus 146 ------~~~~~l~~~~~------------------~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~ 201 (269)
.+...+.+... -...+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|
T Consensus 363 ~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP 442 (997)
T 4a4z_A 363 NNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLP 442 (997)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCC
T ss_pred CHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCC
Confidence 11111110000 012588999999999999999999999999999999999999999
Q ss_pred CCCeEEEecCC---------CCccccccccccCCCCCCCCCCeEEEEecC--chhHHHHHHH
Q 024287 202 ETTHIYNFDLP---------RSAIDYLHRAGRTGRKPFSDEKWTVTSIIT--SEELFVLQRY 252 (269)
Q Consensus 202 ~~~~Vi~~~~p---------~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~--~~~~~~~~~~ 252 (269)
+ ..||+++.| .+..+|+||+||+||.|.+ ..|.++.++. +.+...+..+
T Consensus 443 ~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~-~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 443 T-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLD-STGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp C-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTC-SSEEEEEECCSSCCCHHHHHHH
T ss_pred C-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCC-cceEEEEecCCCcchHHHHHHH
Confidence 9 445544444 4999999999999999865 6899998883 3444444433
No 39
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.96 E-value=2.1e-30 Score=235.07 Aligned_cols=197 Identities=15% Similarity=0.222 Sum_probs=144.6
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCC
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLP 93 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (269)
.+++++++|+||||++ +.+ ....+..++..++ ..+.|+++||||+++....+. ..+...+.+....
T Consensus 274 ~l~~~~~iViDEah~~-~~~-~~~~~~~i~~~l~-~~~~q~il~SAT~~~~~~~~~--------~~~~~~~~v~~~~--- 339 (618)
T 2whx_A 274 RVPNYNLIVMDEAHFT-DPC-SVAARGYISTRVE-MGEAAAIFMTATPPGSTDPFP--------QSNSPIEDIEREI--- 339 (618)
T ss_dssp SCCCCSEEEEESTTCC-SHH-HHHHHHHHHHHHH-HTSCEEEEECSSCTTCCCSSC--------CCSSCEEEEECCC---
T ss_pred cccCCeEEEEECCCCC-Ccc-HHHHHHHHHHHhc-ccCccEEEEECCCchhhhhhh--------ccCCceeeecccC---
Confidence 3899999999999987 333 3355666665542 267999999999987644221 1222222222111
Q ss_pred CcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHH
Q 024287 94 SCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSR 173 (269)
Q Consensus 94 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r 173 (269)
+.. +...+...+.+ ..+++||||+|++.|+. +++.|.+. +..+..+||. +|
T Consensus 340 ----------~~~-~~~~ll~~l~~-~~~~~LVF~~s~~~a~~----------l~~~L~~~---g~~v~~lhg~----~R 390 (618)
T 2whx_A 340 ----------PER-SWNTGFDWITD-YQGKTVWFVPSIKAGND----------IANCLRKS---GKRVIQLSRK----TF 390 (618)
T ss_dssp ----------CSS-CCSSSCHHHHH-CCSCEEEECSSHHHHHH----------HHHHHHHT---TCCEEEECTT----TH
T ss_pred ----------CHH-HHHHHHHHHHh-CCCCEEEEECChhHHHH----------HHHHHHHc---CCcEEEEChH----HH
Confidence 111 11122222333 35799999999997544 77788776 6789999984 78
Q ss_pred HHHHHHHhcCCccEEEEeccccccCCCCCCCeE--------------------EEecCCCCccccccccccCCCCCCCCC
Q 024287 174 AASLLEVRQGGGYLLVSTDIAARGIDLPETTHI--------------------YNFDLPRSAIDYLHRAGRTGRKPFSDE 233 (269)
Q Consensus 174 ~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~V--------------------i~~~~p~~~~~~~qr~GR~gR~~~~~~ 233 (269)
.++++.|++|+.+|||||+++++|+|+| +++| |+++.|.+.++|+||+||+||.|. .
T Consensus 391 ~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~--~ 467 (618)
T 2whx_A 391 DTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA--Q 467 (618)
T ss_dssp HHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT--C
T ss_pred HHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCC--C
Confidence 8899999999999999999999999998 8888 778889999999999999999962 4
Q ss_pred CeEEEEecC---chhHHHHHHHHHHh
Q 024287 234 KWTVTSIIT---SEELFVLQRYENEL 256 (269)
Q Consensus 234 ~g~~~~~~~---~~~~~~~~~~~~~~ 256 (269)
.|.+++|++ +.|...+..+++.+
T Consensus 468 ~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 468 EDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp CCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred CCeEEEEccCCchhhHHHHHHHHhHh
Confidence 789999997 77777777777765
No 40
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=6.3e-30 Score=244.46 Aligned_cols=222 Identities=17% Similarity=0.221 Sum_probs=157.2
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhc------cCCCccEEEEeccCCchhhHHHHHHhh
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS------SCNNRQTVFASASIPQHRRFLHNCIQQ 74 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~------~~~~~q~i~~SATl~~~~~~l~~~~~~ 74 (269)
||||.+++.+ +++++++|+||+|++++++.....+...+.... .....|++++|||+++. ..+...+..
T Consensus 163 P~~L~~~l~~----L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~ 237 (1054)
T 1gku_B 163 TQFLSKHYRE----LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFR 237 (1054)
T ss_dssp HHHHHHCSTT----SCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHH
T ss_pred HHHHHHHHHH----hccCCEEEEeChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhh
Confidence 7899988876 779999999999999987644343333332111 12568999999999887 433332222
Q ss_pred hcccCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhh
Q 024287 75 KWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS 154 (269)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~ 154 (269)
.. ..+.+........++.+.+. ...+...+.++++.. ++++||||++++.|+. +++.|.+.
T Consensus 238 ~~-----~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~----------l~~~L~~~ 298 (1054)
T 1gku_B 238 QL-----LNFDIGSSRITVRNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEE----------IYESLKNK 298 (1054)
T ss_dssp HH-----HCCCCSCCEECCCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHH----------HHHTTTTS
T ss_pred cc-----eEEEccCcccCcCCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHH----------HHHHHhhc
Confidence 21 12233333344455666666 355667777788765 4789999999987554 56666554
Q ss_pred cCCCCceEEecccCChhHHHHHHHHHhcCCccEEEE----eccccccCCCCCC-CeEEEecCC-----------------
Q 024287 155 YKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVS----TDIAARGIDLPET-THIYNFDLP----------------- 212 (269)
Q Consensus 155 ~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~----T~~~~~Gidi~~~-~~Vi~~~~p----------------- 212 (269)
+.+..+||+| .++++.|++|+.+|||| |+++++|+|+|+| ++||++|+|
T Consensus 299 ----~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~ 369 (1054)
T 1gku_B 299 ----FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMV 369 (1054)
T ss_dssp ----SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHH
T ss_pred ----cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHH
Confidence 6799999998 36789999999999999 8999999999996 999999999
Q ss_pred ------------------------------------------------------CCccccccccccCCCCCCCCCCe--E
Q 024287 213 ------------------------------------------------------RSAIDYLHRAGRTGRKPFSDEKW--T 236 (269)
Q Consensus 213 ------------------------------------------------------~~~~~~~qr~GR~gR~~~~~~~g--~ 236 (269)
.+..+|+||+||+||.| ..| .
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g---~~g~~~ 446 (1054)
T 1gku_B 370 KLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLF---AGGLTK 446 (1054)
T ss_dssp HHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEE---TTEECC
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhcc---CCCCce
Confidence 78999999999999987 333 2
Q ss_pred EEEecCchhHHHHHHHHHHhcC
Q 024287 237 VTSIITSEELFVLQRYENELKF 258 (269)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~ 258 (269)
+++++...+...+..+++.++.
T Consensus 447 g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 447 GASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EEEEEECSCHHHHHHHHHHHHT
T ss_pred EEEEEEecCHHHHHHHHHHHhh
Confidence 4555555567777777777753
No 41
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.96 E-value=7.6e-30 Score=232.89 Aligned_cols=210 Identities=13% Similarity=0.238 Sum_probs=144.5
Q ss_pred CchhhHHHHhCce--------ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHH
Q 024287 1 MGSLCQLIEKHIF--------KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCI 72 (269)
Q Consensus 1 pgrl~~~l~~~~~--------~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~ 72 (269)
||++++++.++.+ .+++++++|+||+|++ +.. ....+..+.... ...+.|+++||||+++.+..+.
T Consensus 308 p~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~-~~~-~~~~~~~l~~~~-~~~~~~vl~~SAT~~~~i~~~~--- 381 (673)
T 2wv9_A 308 GNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFT-DPA-SIAARGYIATRV-EAGEAAAIFMTATPPGTSDPFP--- 381 (673)
T ss_dssp SCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCC-CHH-HHHHHHHHHHHH-HTTSCEEEEECSSCTTCCCSSC---
T ss_pred HHHHHHHHHhhhhHHHHhcccccccceEEEEeCCccc-Ccc-HHHHHHHHHHhc-cccCCcEEEEcCCCChhhhhhc---
Confidence 5666655555544 6899999999999986 221 112222222222 2367999999999987643221
Q ss_pred hhhcccCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHh
Q 024287 73 QQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLS 152 (269)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~ 152 (269)
..+.....+.. ..+.......+ ..+.. .++++||||++++.++. +++.|.
T Consensus 382 -----~~~~~i~~v~~-------------~~~~~~~~~~l-~~l~~-~~~~~lVF~~s~~~~e~----------la~~L~ 431 (673)
T 2wv9_A 382 -----DTNSPVHDVSS-------------EIPDRAWSSGF-EWITD-YAGKTVWFVASVKMSNE----------IAQCLQ 431 (673)
T ss_dssp -----CCSSCEEEEEC-------------CCCSSCCSSCC-HHHHS-CCSCEEEECSSHHHHHH----------HHHHHH
T ss_pred -----ccCCceEEEee-------------ecCHHHHHHHH-HHHHh-CCCCEEEEECCHHHHHH----------HHHHHH
Confidence 11111111110 01111111112 22222 46899999999997554 777887
Q ss_pred hhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEE--------------------ecCC
Q 024287 153 NSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYN--------------------FDLP 212 (269)
Q Consensus 153 ~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~--------------------~~~p 212 (269)
+. +..+..+|| .+|.++++.|++|+.+|||||+++++|+|+| +++||+ |+.|
T Consensus 432 ~~---g~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P 503 (673)
T 2wv9_A 432 RA---GKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSA 503 (673)
T ss_dssp TT---TCCEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEE
T ss_pred hC---CCeEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCC
Confidence 76 678999999 3789999999999999999999999999999 999998 5689
Q ss_pred CCccccccccccCCCCCCCCCCeEEEEec---CchhHHHHHHHHHHh
Q 024287 213 RSAIDYLHRAGRTGRKPFSDEKWTVTSII---TSEELFVLQRYENEL 256 (269)
Q Consensus 213 ~~~~~~~qr~GR~gR~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~ 256 (269)
.+.++|+||+||+||.+ +..|.+++|+ ++.+...+..+++..
T Consensus 504 ~s~~~y~Qr~GRaGR~~--g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 504 ITSASAAQRRGRVGRNP--SQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp CCHHHHHHHHTTSSCCS--SCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CCHHHHHHHhhccCCCC--CCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 99999999999999993 2788999995 566665555555544
No 42
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.93 E-value=4.1e-31 Score=202.91 Aligned_cols=157 Identities=29% Similarity=0.500 Sum_probs=141.2
Q ss_pred CcceeEEEEecC-cchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhH
Q 024287 94 SCLHHRFVICGK-KMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172 (269)
Q Consensus 94 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~ 172 (269)
.++.|.++.++. ..|...+.++++...++++||||++++.++. +++.|.+. ++.+..+||+|++.+
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~----------l~~~L~~~---~~~~~~~~g~~~~~~ 68 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHE----------LANWLREA---GINNCYLEGEMVQGK 68 (170)
Confidence 357788888887 8899999999988777899999999997555 55666655 678899999999999
Q ss_pred HHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHH
Q 024287 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRY 252 (269)
Q Consensus 173 r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~ 252 (269)
|.++++.|++|+.++||||+++++|+|+|++++||++|+|.++.+|+||+||+||.| ..|.++.++++.+...+..+
T Consensus 69 r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g---~~g~~~~~~~~~~~~~~~~~ 145 (170)
T 2yjt_D 69 RNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG---RKGTAISLVEAHDHLLLGKV 145 (170)
Confidence 999999999999999999999999999999999999999999999999999999998 78999999999999999999
Q ss_pred HHHhcCcccccccc
Q 024287 253 ENELKFKSEELTLQ 266 (269)
Q Consensus 253 ~~~~~~~~~~~~~~ 266 (269)
++.++.++++.+++
T Consensus 146 ~~~~~~~~~~~~~~ 159 (170)
T 2yjt_D 146 GRYIEEPIKARVID 159 (170)
Confidence 99998888876654
No 43
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.96 E-value=1.3e-28 Score=230.63 Aligned_cols=126 Identities=15% Similarity=0.247 Sum_probs=69.2
Q ss_pred chHHHHHHHHhh----cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhc---------CCCCceEEecccCChhHH
Q 024287 107 MKYQTLLSLIQS----DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY---------KGSSDVLLLEEEMNFNSR 173 (269)
Q Consensus 107 ~k~~~l~~ll~~----~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~v~~~h~~~~~~~r 173 (269)
.|...+.+++.. ..+.++||||++++.+ ..+.+.|.+.. ..+.....+||+|++.+|
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~----------~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR 682 (797)
T 4a2q_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALV----------SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQ 682 (797)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCEEEEESSHHHH----------HHHHHHHHTCSTTCSCCCEEC-----------------
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEECcHHHH----------HHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHH
Confidence 356666667754 4568999999999864 44777776531 123456678999999999
Q ss_pred HHHHHHHhc-CCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHH
Q 024287 174 AASLLEVRQ-GGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELF 247 (269)
Q Consensus 174 ~~~~~~f~~-~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~ 247 (269)
.++++.|++ |+.+|||||+++++|+|+|++++||+||.|.++.+|+||+|| ||. ..|.++.|+++.+..
T Consensus 683 ~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~----~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 683 KGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA----AGSKCILVTSKTEVV 752 (797)
T ss_dssp -----------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC------------CCCEEEEECCHHHH
T ss_pred HHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC----CCceEEEEEeCCcHH
Confidence 999999999 999999999999999999999999999999999999999999 988 578899999886653
No 44
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.96 E-value=9.2e-30 Score=232.16 Aligned_cols=129 Identities=13% Similarity=0.134 Sum_probs=108.7
Q ss_pred EEEecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHH
Q 024287 100 FVICGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASL 177 (269)
Q Consensus 100 ~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~ 177 (269)
++.++..+|...+.+.+... .+.++||||+|++.+ ..+++.|.+. ++++..+||++...+|..+.
T Consensus 409 ~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~s----------e~Ls~~L~~~---gi~~~vLhg~~~~rEr~ii~ 475 (844)
T 1tf5_A 409 LIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETS----------ELISKLLKNK---GIPHQVLNAKNHEREAQIIE 475 (844)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH----------HHHHHHHHTT---TCCCEEECSSCHHHHHHHHT
T ss_pred EEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHH----------HHHHHHHHHC---CCCEEEeeCCccHHHHHHHH
Confidence 34445667888888888652 467899999999874 4478888876 78899999999888887666
Q ss_pred HHHhcCCccEEEEeccccccCCCC--------CCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhH
Q 024287 178 LEVRQGGGYLLVSTDIAARGIDLP--------ETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEEL 246 (269)
Q Consensus 178 ~~f~~~~~~iLv~T~~~~~Gidi~--------~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~ 246 (269)
+.|+.| .|+|||++++||+|++ ++.+||+++.|.+.+.|.||+||+||.| ..|.+++|++..|.
T Consensus 476 ~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG---~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 476 EAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQG---DPGITQFYLSMEDE 547 (844)
T ss_dssp TTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGG---CCEEEEEEEETTSS
T ss_pred HcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCC---CCCeEEEEecHHHH
Confidence 556554 6999999999999999 7889999999999999999999999999 89999999987653
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.95 E-value=6.8e-28 Score=238.13 Aligned_cols=241 Identities=13% Similarity=0.141 Sum_probs=162.7
Q ss_pred CchhhHHHHhC--ceecCcccEEEEeccccccCCchhhhHHHHHHhhhc-----cCCCccEEEEeccCCchhhHHHHHHh
Q 024287 1 MGSLCQLIEKH--IFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS-----SCNNRQTVFASASIPQHRRFLHNCIQ 73 (269)
Q Consensus 1 pgrl~~~l~~~--~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~-----~~~~~q~i~~SATl~~~~~~l~~~~~ 73 (269)
|||+..++++. .-.+++++++|+||+|.+.+. .+..++.++..++ .+.+.|++++|||+++..+ +.+
T Consensus 1028 PEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~--rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~d-la~--- 1101 (1724)
T 4f92_B 1028 PEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE--NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKD-VAH--- 1101 (1724)
T ss_dssp HHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST--THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHH-HHH---
T ss_pred HHHHHHHHhCcccccccceeeEEEeechhhcCCC--CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHH-HHH---
Confidence 78888888763 346899999999999966543 3455555554332 2468999999999998643 322
Q ss_pred hhcccCceeEEeecCcccCCCcceeEEEEecCcchHH-------HHHHHHhh-cCCCceEEEeeccchhhhhcCCCCc--
Q 024287 74 QKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQ-------TLLSLIQS-DAPESGIIFVGEQSEKSKKAGNAPS-- 143 (269)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~-------~l~~ll~~-~~~~~~lIF~~s~~~~~~~~~~~~~-- 143 (269)
|.+..............+..+...+...+...... .+...+.. ...++++|||+|++.|+..|..+..
T Consensus 1102 --WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~ 1179 (1724)
T 4f92_B 1102 --WLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTC 1179 (1724)
T ss_dssp --HHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred --HhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHH
Confidence 22222111222222223444555555444332221 22233333 3567999999999998886522110
Q ss_pred -------------hHHHHHHH--------hhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCC
Q 024287 144 -------------TTLLVDFL--------SNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPE 202 (269)
Q Consensus 144 -------------~~~~~~~l--------~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~ 202 (269)
...+...+ .+.. ...+..|||+|++.+|..+++.|++|.++|||||+.+++|+|+|.
T Consensus 1180 ~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l--~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa 1257 (1724)
T 4f92_B 1180 AADIQRQRFLHCTEKDLIPYLEKLSDSTLKETL--LNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAA 1257 (1724)
T ss_dssp HHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHH--HTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCB
T ss_pred hhccchhhhhcccHHHHHHHHhhcccHHHHHHH--hCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCc
Confidence 01111111 1111 135899999999999999999999999999999999999999999
Q ss_pred CCeEEE----ec------CCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHH
Q 024287 203 TTHIYN----FD------LPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRY 252 (269)
Q Consensus 203 ~~~Vi~----~~------~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~ 252 (269)
..+||. || .|.+..+|.||+|||||.|.+ ..|.++.++.+.+...++.+
T Consensus 1258 ~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d-~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1258 HLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQD-DEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp SEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTC-SCEEEEEEEEGGGHHHHHHH
T ss_pred cEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCC-CceEEEEEecchHHHHHHHH
Confidence 999983 32 467899999999999999966 68999999998877765443
No 46
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.95 E-value=4.3e-28 Score=239.56 Aligned_cols=234 Identities=20% Similarity=0.212 Sum_probs=159.2
Q ss_pred CchhhHHHHhCc--eecCcccEEEEeccccccCCchhhhHHHHHHhhhc-----cCCCccEEEEeccCCchhhHHHHHHh
Q 024287 1 MGSLCQLIEKHI--FKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS-----SCNNRQTVFASASIPQHRRFLHNCIQ 73 (269)
Q Consensus 1 pgrl~~~l~~~~--~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~-----~~~~~q~i~~SATl~~~~~~l~~~~~ 73 (269)
|+++..++++.. -.++++++|||||+|.+ .+. .+..++.++..+. .+.+.|++++|||+|+..+ +.+
T Consensus 189 pEkld~llr~~~~~~~l~~v~~vIiDEvH~l-~d~-RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~d-vA~--- 262 (1724)
T 4f92_B 189 PEKWDIITRKGGERTYTQLVRLIILDEIHLL-HDD-RGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED-VAT--- 262 (1724)
T ss_dssp HHHHHHHTTSSTTHHHHTTEEEEEETTGGGG-GST-THHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHH-HHH---
T ss_pred HHHHHHHHcCCccchhhcCcCEEEEecchhc-CCc-cHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHH-HHH---
Confidence 577766666543 35899999999999954 443 4455555554321 2478999999999998543 322
Q ss_pred hhcccCc-eeEEeecCcccCCCcceeEEEEecCcch---HHH----HHHHHhh-cCCCceEEEeeccchhhhhcCCCCch
Q 024287 74 QKWTKSD-VVHVHVNAIKPLPSCLHHRFVICGKKMK---YQT----LLSLIQS-DAPESGIIFVGEQSEKSKKAGNAPST 144 (269)
Q Consensus 74 ~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~k---~~~----l~~ll~~-~~~~~~lIF~~s~~~~~~~~~~~~~~ 144 (269)
|...+ ..........-.|..+.+.++....... ... +.+.+.. ..++++||||+|++.|+++|.
T Consensus 263 --wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~----- 335 (1724)
T 4f92_B 263 --FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTAR----- 335 (1724)
T ss_dssp --HTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHH-----
T ss_pred --HhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHH-----
Confidence 22111 1111111122224446666655544322 222 2222222 246799999999999888642
Q ss_pred HHHHHHHh--------------------------------hhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec
Q 024287 145 TLLVDFLS--------------------------------NSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD 192 (269)
Q Consensus 145 ~~~~~~l~--------------------------------~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~ 192 (269)
.+.+... +.+ ...+.+|||+|++.+|..+++.|++|.++|||||+
T Consensus 336 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTs 412 (1724)
T 4f92_B 336 -AIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLL--PYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTA 412 (1724)
T ss_dssp -HHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHT--TTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECH
T ss_pred -HHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHh--hcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcc
Confidence 2222211 111 23488999999999999999999999999999999
Q ss_pred cccccCCCCCCCeEEE----ec------CCCCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHH
Q 024287 193 IAARGIDLPETTHIYN----FD------LPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQR 251 (269)
Q Consensus 193 ~~~~Gidi~~~~~Vi~----~~------~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~ 251 (269)
++++|||+|..++||. |+ .|.+..+|.||+|||||.|.+ ..|.++++.++.+......
T Consensus 413 TLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d-~~G~~ii~~~~~~~~~~~~ 480 (1724)
T 4f92_B 413 TLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYD-TKGEGILITSHGELQYYLS 480 (1724)
T ss_dssp HHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTC-SCEEEEEEEESTTCCHHHH
T ss_pred hhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCC-CccEEEEEecchhHHHHHH
Confidence 9999999999999995 44 356899999999999999866 6899999988877655443
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.95 E-value=1.3e-28 Score=228.42 Aligned_cols=217 Identities=16% Similarity=0.180 Sum_probs=157.8
Q ss_pred CchhhHHHHhCceecCcccEEEEecccc-ccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDF-LFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~-l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
||++.+.+..+ ..++++++||+||+|. .++.......+..+.... .+.|++++|||++.. .+...+ ..
T Consensus 193 ~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~---~~~~iIl~SAT~~~~--~l~~~~-----~~ 261 (773)
T 2xau_A 193 DGMLLREAMED-HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR---PDLKIIIMSATLDAE--KFQRYF-----ND 261 (773)
T ss_dssp HHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC---TTCEEEEEESCSCCH--HHHHHT-----TS
T ss_pred HHHHHHHHhhC-ccccCCCEEEecCccccccchHHHHHHHHHHHHhC---CCceEEEEeccccHH--HHHHHh-----cC
Confidence 68888888775 4699999999999995 454333334444444332 578999999999642 232222 12
Q ss_pred ceeEEeecCcccCCCcceeEEEEecCcchHH----HHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhh--
Q 024287 80 DVVHVHVNAIKPLPSCLHHRFVICGKKMKYQ----TLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSN-- 153 (269)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~----~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~-- 153 (269)
. ..+.+... ...+.++|...+..+... .+.++.....++++||||++++.++. +++.|.+
T Consensus 262 ~-~vi~v~gr---~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~----------l~~~L~~~~ 327 (773)
T 2xau_A 262 A-PLLAVPGR---TYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIED----------AVRKISLEG 327 (773)
T ss_dssp C-CEEECCCC---CCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHH----------HHHHHHHHH
T ss_pred C-CcccccCc---ccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHH----------HHHHHHHHH
Confidence 2 22222211 123555555544444333 33344444467899999999998766 4444432
Q ss_pred ------hcCCCCceEEecccCChhHHHHHHHHHh-----cCCccEEEEeccccccCCCCCCCeEEEecC-----------
Q 024287 154 ------SYKGSSDVLLLEEEMNFNSRAASLLEVR-----QGGGYLLVSTDIAARGIDLPETTHIYNFDL----------- 211 (269)
Q Consensus 154 ------~~~~~~~v~~~h~~~~~~~r~~~~~~f~-----~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~----------- 211 (269)
....++.+..+||+|++.+|..+++.|+ +|..+|||||+++++|+|+|++++||++++
T Consensus 328 ~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g 407 (773)
T 2xau_A 328 DQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIR 407 (773)
T ss_dssp HHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTT
T ss_pred HhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccC
Confidence 1123578999999999999999999999 999999999999999999999999999887
Q ss_pred -------CCCccccccccccCCCCCCCCCCeEEEEecCchhH
Q 024287 212 -------PRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEEL 246 (269)
Q Consensus 212 -------p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~ 246 (269)
|.+.++|.||+||+||. ..|.|+.++++.+.
T Consensus 408 ~~~L~~~p~S~~s~~QR~GRaGR~----~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 408 VESLLVSPISKASAQQRAGRAGRT----RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEEEEECCHHHHHHHHHGGGSS----SSEEEEESSCHHHH
T ss_pred ccccccccCCHHHHHhhccccCCC----CCCEEEEEecHHHh
Confidence 88999999999999998 57999999998766
No 48
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.95 E-value=7.1e-28 Score=228.39 Aligned_cols=126 Identities=16% Similarity=0.249 Sum_probs=69.5
Q ss_pred chHHHHHHHHhh----cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhc---------CCCCceEEecccCChhHH
Q 024287 107 MKYQTLLSLIQS----DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY---------KGSSDVLLLEEEMNFNSR 173 (269)
Q Consensus 107 ~k~~~l~~ll~~----~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~v~~~h~~~~~~~r 173 (269)
.|...+.++|.. ..+.++||||++++.++ .+.+.|.+.. -.+.....+||+|+..+|
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae----------~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR 682 (936)
T 4a2w_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVS----------ALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQ 682 (936)
T ss_dssp HHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHH----------HHHHHHHHCSTTSSCCCEEC-----------------
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHH----------HHHHHHhhCccccccceeEEecCCCcccCCCCCHHHH
Confidence 355566667754 34689999999999744 4777777641 013345667999999999
Q ss_pred HHHHHHHhc-CCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhHH
Q 024287 174 AASLLEVRQ-GGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELF 247 (269)
Q Consensus 174 ~~~~~~f~~-~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~ 247 (269)
.++++.|++ |+.+|||||+++++|+|+|++++||+||+|.++.+|+||+|| ||. ..|.++.+++..+..
T Consensus 683 ~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~----~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 683 KGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA----AGSKCILVTSKTEVV 752 (936)
T ss_dssp -----------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC------------CCCEEEEESCHHHH
T ss_pred HHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC----CCCEEEEEEeCCCHH
Confidence 999999999 999999999999999999999999999999999999999999 988 467888888876553
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.95 E-value=1.2e-28 Score=222.50 Aligned_cols=209 Identities=17% Similarity=0.230 Sum_probs=144.9
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
|||| +.++.+.+++++++|+||+| +++.+ +...+..+++.++......++++|||+++.+.. ...+
T Consensus 305 PGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~-~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~~---------~~p~ 370 (666)
T 3o8b_A 305 YGKF---LADGGCSGGAYDIIICDECH-STDST-TILGIGTVLDQAETAGARLVVLATATPPGSVTV---------PHPN 370 (666)
T ss_dssp HHHH---HHTTSCCTTSCSEEEETTTT-CCSHH-HHHHHHHHHHHTTTTTCSEEEEEESSCTTCCCC---------CCTT
T ss_pred cHHH---HhCCCcccCcccEEEEccch-hcCcc-HHHHHHHHHHhhhhcCCceEEEECCCCCccccc---------CCcc
Confidence 6776 57788899999999999998 55555 446677788777533333478889999874320 1111
Q ss_pred eeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCc
Q 024287 81 VVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSD 160 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (269)
...+...... .+. .+ ..... +....++++||||++++.++. +++.|.+. ++.
T Consensus 371 i~~v~~~~~~----~i~-~~---~~~~~-------l~~~~~~~vLVFv~Tr~~ae~----------la~~L~~~---g~~ 422 (666)
T 3o8b_A 371 IEEVALSNTG----EIP-FY---GKAIP-------IEAIRGGRHLIFCHSKKKCDE----------LAAKLSGL---GIN 422 (666)
T ss_dssp EEEEECBSCS----SEE-ET---TEEEC-------GGGSSSSEEEEECSCHHHHHH----------HHHHHHTT---TCC
T ss_pred eEEEeecccc----hhH-HH---Hhhhh-------hhhccCCcEEEEeCCHHHHHH----------HHHHHHhC---CCc
Confidence 1111111100 010 00 00001 223357899999999997544 77888776 688
Q ss_pred eEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEE----------Eec-----------CCCCccccc
Q 024287 161 VLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIY----------NFD-----------LPRSAIDYL 219 (269)
Q Consensus 161 v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi----------~~~-----------~p~~~~~~~ 219 (269)
+..+||+|++.+ |+++..+|||||+++++|+|+| +++|| ||| .|.+.++|+
T Consensus 423 v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syi 494 (666)
T 3o8b_A 423 AVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRS 494 (666)
T ss_dssp EEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHH
T ss_pred EEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHH
Confidence 999999999875 4556669999999999999997 99988 677 899999999
Q ss_pred cccccCCCCCCCCCCeEEEEecCchhHHH--H--HHHHHHhcCcccccc
Q 024287 220 HRAGRTGRKPFSDEKWTVTSIITSEELFV--L--QRYENELKFKSEELT 264 (269)
Q Consensus 220 qr~GR~gR~~~~~~~g~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~ 264 (269)
||+||+|| | ..|. +.|+++.+... + ..+++..+..+++..
T Consensus 495 QRiGRtGR-g---~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~~~ 538 (666)
T 3o8b_A 495 QRRGRTGR-G---RRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAWYE 538 (666)
T ss_dssp HHHTTBCS-S---SCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHTSC
T ss_pred HHhccCCC-C---CCCE-EEEEecchhhcccccHHHHHHHhcCCccccc
Confidence 99999999 6 7888 88888766544 2 455555554444443
No 50
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.95 E-value=4.7e-28 Score=213.06 Aligned_cols=195 Identities=14% Similarity=0.228 Sum_probs=134.7
Q ss_pred chhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCce
Q 024287 2 GSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDV 81 (269)
Q Consensus 2 grl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~ 81 (269)
|.+.+.+.+. ..+++++++|+||+|++ +.+ . ......+.......+.|+++||||+|+....+ +. .+.
T Consensus 96 ~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~-~-~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~-------~~-~~~ 163 (451)
T 2jlq_A 96 ATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPC-S-VAARGYISTRVEMGEAAAIFMTATPPGSTDPF-------PQ-SNS 163 (451)
T ss_dssp HHHHHHHHHC-SCCCCCSEEEEETTTCC-SHH-H-HHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS-------CC-CSS
T ss_pred HHHHHHhhCc-ccccCCCEEEEeCCccC-Ccc-h-HHHHHHHHHhhcCCCceEEEEccCCCccchhh-------hc-CCC
Confidence 5566666544 56899999999999966 322 1 22222222222236799999999998754311 11 222
Q ss_pred eEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCce
Q 024287 82 VHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDV 161 (269)
Q Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v 161 (269)
..+...... +.. .+ ... ...+.. ..+++||||++++.|+. +++.|.+. +..+
T Consensus 164 ~~~~~~~~~--p~~---~~-----~~~----~~~l~~-~~~~~lVF~~s~~~a~~----------l~~~L~~~---g~~~ 215 (451)
T 2jlq_A 164 PIEDIEREI--PER---SW-----NTG----FDWITD-YQGKTVWFVPSIKAGND----------IANCLRKS---GKRV 215 (451)
T ss_dssp CEEEEECCC--CSS---CC-----SSS----CHHHHH-CCSCEEEECSSHHHHHH----------HHHHHHTT---TCCE
T ss_pred ceEecCccC--Cch---hh-----HHH----HHHHHh-CCCCEEEEcCCHHHHHH----------HHHHHHHc---CCeE
Confidence 222221111 100 00 111 222333 35799999999997544 77788776 6788
Q ss_pred EEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEec--------------------CCCCccccccc
Q 024287 162 LLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFD--------------------LPRSAIDYLHR 221 (269)
Q Consensus 162 ~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~--------------------~p~~~~~~~qr 221 (269)
..+||++. .++++.|++|+.+|||||+++++|+|+|+ ++||++| .|.+.++|+||
T Consensus 216 ~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr 290 (451)
T 2jlq_A 216 IQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQR 290 (451)
T ss_dssp EEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHH
T ss_pred EECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHh
Confidence 99999764 57899999999999999999999999999 9999998 99999999999
Q ss_pred cccCCCCCCCCCCeEEEEecCc
Q 024287 222 AGRTGRKPFSDEKWTVTSIITS 243 (269)
Q Consensus 222 ~GR~gR~~~~~~~g~~~~~~~~ 243 (269)
+||+||.|. ..|.++++...
T Consensus 291 ~GRaGR~g~--~~g~~~~~~~~ 310 (451)
T 2jlq_A 291 RGRIGRNPA--QEDDQYVFSGD 310 (451)
T ss_dssp HTTSSCCTT--CCCEEEEECSC
T ss_pred ccccCCCCC--CCccEEEEeCC
Confidence 999999982 26778877643
No 51
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.95 E-value=3.9e-28 Score=224.81 Aligned_cols=99 Identities=21% Similarity=0.368 Sum_probs=82.8
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhh--cC-CCCceEEeccc--------CChhHHHHHHHHHhcCCccEEE
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS--YK-GSSDVLLLEEE--------MNFNSRAASLLEVRQGGGYLLV 189 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~~v~~~h~~--------~~~~~r~~~~~~f~~~~~~iLv 189 (269)
++++||||++++.++. +.+.|.+. +. .++.+..+||+ |++.+|.++++.|++|+.+|||
T Consensus 400 ~~~~IVF~~s~~~~~~----------l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLV 469 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYA----------LSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLI 469 (699)
T ss_dssp CCCEEEECSCHHHHHH----------HHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSE
T ss_pred CCcEEEEECcHHHHHH----------HHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 6899999999997544 77777654 11 15788999999 9999999999999999999999
Q ss_pred EeccccccCCCCCCCeEEEecCCCCccccccccccCCCCC
Q 024287 190 STDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKP 229 (269)
Q Consensus 190 ~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~ 229 (269)
||+++++|+|+|++++||+||+|.++.+|+||+||+||.|
T Consensus 470 aT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 470 ATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp EECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred EccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 9999999999999999999999999999999999976654
No 52
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.95 E-value=2.4e-29 Score=221.67 Aligned_cols=186 Identities=15% Similarity=0.243 Sum_probs=125.2
Q ss_pred eecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccC
Q 024287 13 FKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPL 92 (269)
Q Consensus 13 ~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (269)
..++++++||+||+|.+ .......+ ..+.......+.|+++||||++..+..+. ....+... +...
T Consensus 108 ~~l~~~~~iViDEaH~~--~~~~~~~~-~~~~~~~~~~~~~~il~SAT~~~~~~~~~-------~~~~pi~~-~~~~--- 173 (459)
T 2z83_A 108 NRVPNYNLFVMDEAHFT--DPASIAAR-GYIATKVELGEAAAIFMTATPPGTTDPFP-------DSNAPIHD-LQDE--- 173 (459)
T ss_dssp C-CCCCSEEEESSTTCC--SHHHHHHH-HHHHHHHHTTSCEEEEECSSCTTCCCSSC-------CCSSCEEE-EECC---
T ss_pred ccccCCcEEEEECCccC--CchhhHHH-HHHHHHhccCCccEEEEEcCCCcchhhhc-------cCCCCeEE-eccc---
Confidence 46899999999999974 11011111 11111112368999999999987643221 01111111 1100
Q ss_pred CCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhH
Q 024287 93 PSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNS 172 (269)
Q Consensus 93 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~ 172 (269)
.+.. +...+...+... ++++||||++++.++. +++.|.+. +..+..+||. +
T Consensus 174 ----------~~~~-~~~~~~~~l~~~-~~~~LVF~~s~~~~~~----------l~~~L~~~---g~~v~~lh~~----~ 224 (459)
T 2z83_A 174 ----------IPDR-AWSSGYEWITEY-AGKTVWFVASVKMGNE----------IAMCLQRA---GKKVIQLNRK----S 224 (459)
T ss_dssp ----------CCSS-CCSSCCHHHHHC-CSCEEEECSCHHHHHH----------HHHHHHHT---TCCEEEESTT----C
T ss_pred ----------CCcc-hhHHHHHHHHhc-CCCEEEEeCChHHHHH----------HHHHHHhc---CCcEEecCHH----H
Confidence 0010 111112223332 5799999999987544 77778776 6789999985 6
Q ss_pred HHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEE--------------------ecCCCCccccccccccCCCCCCCC
Q 024287 173 RAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYN--------------------FDLPRSAIDYLHRAGRTGRKPFSD 232 (269)
Q Consensus 173 r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~--------------------~~~p~~~~~~~qr~GR~gR~~~~~ 232 (269)
|.++++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|.+.++|+||+||+||.|.
T Consensus 225 R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~-- 301 (459)
T 2z83_A 225 YDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPN-- 301 (459)
T ss_dssp CCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTT--
T ss_pred HHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCC--
Confidence 778899999999999999999999999999 99999 7799999999999999999982
Q ss_pred CCeEEEEecCch
Q 024287 233 EKWTVTSIITSE 244 (269)
Q Consensus 233 ~~g~~~~~~~~~ 244 (269)
..|.++.++++.
T Consensus 302 ~~G~~~~~~~~~ 313 (459)
T 2z83_A 302 QVGDEYHYGGAT 313 (459)
T ss_dssp CCCEEEEECSCC
T ss_pred CCCeEEEEEccc
Confidence 278899888764
No 53
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=5.8e-27 Score=214.32 Aligned_cols=213 Identities=17% Similarity=0.181 Sum_probs=146.9
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCC-chhhhHHHH----HHhh---hc-------------cCCCccEEEEec
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNS-SKQVSSLKK----LLAS---YS-------------SCNNRQTVFASA 59 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~-~~~~~~i~~----i~~~---~~-------------~~~~~q~i~~SA 59 (269)
||||++++..+. ++|+||+|++++. +..+..+.+ .+.. ++ .....|++++||
T Consensus 322 pg~LlDyl~~~~-------llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SA 394 (661)
T 2d7d_A 322 PYTLLDYFPDDF-------MIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSA 394 (661)
T ss_dssp CBCGGGGSCSSC-------EEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEECS
T ss_pred ccHHHHHcccCc-------EEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEEec
Confidence 788988876554 8999999987632 111111111 1110 00 013689999999
Q ss_pred cCCchhhHHHHHHhhhcccCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhh
Q 024287 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKK 137 (269)
Q Consensus 60 Tl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~ 137 (269)
|.++..... . .........+.... . .. +...+...+...+...+... .+.++||||+|+..|+.
T Consensus 395 T~~~~~~~~----~-----~~~~~~~~r~~~l~-~--p~-i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~- 460 (661)
T 2d7d_A 395 TPGPYEIEH----T-----DEMVEQIIRPTGLL-D--PL-IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSED- 460 (661)
T ss_dssp SCCHHHHHH----C-----SSCEEECCCTTCCC-C--CE-EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHH-
T ss_pred CCChhHHHh----h-----hCeeeeeecccCCC-C--Ce-EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHH-
Confidence 987542111 0 11111111111111 1 11 11223344555555545432 46799999999987544
Q ss_pred cCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecC-----C
Q 024287 138 AGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDL-----P 212 (269)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~-----p 212 (269)
+.+.|.+. ++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||++|. |
T Consensus 461 ---------L~~~L~~~---gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p 528 (661)
T 2d7d_A 461 ---------LTDYLKEI---GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFL 528 (661)
T ss_dssp ---------HHHHHHHT---TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTT
T ss_pred ---------HHHHHHhc---CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCC
Confidence 77888876 678999999999999999999999999999999999999999999999999997 9
Q ss_pred CCccccccccccCCCCCCCCCCeEEEEecCchhHHHHH
Q 024287 213 RSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQ 250 (269)
Q Consensus 213 ~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~ 250 (269)
.+..+|+||+||+||. ..|.+++++++.+.....
T Consensus 529 ~s~~~~iQr~GRagR~----~~G~~i~~~~~~~~~~~~ 562 (661)
T 2d7d_A 529 RSERSLIQTIGRAARN----AEGRVIMYADKITKSMEI 562 (661)
T ss_dssp TSHHHHHHHHHTTTTS----TTCEEEEECSSCCHHHHH
T ss_pred CCHHHHHHHhCcccCC----CCCEEEEEEeCCCHHHHH
Confidence 9999999999999997 478999999886554433
No 54
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.94 E-value=1.7e-27 Score=216.87 Aligned_cols=128 Identities=17% Similarity=0.160 Sum_probs=110.5
Q ss_pred EEecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHH
Q 024287 101 VICGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178 (269)
Q Consensus 101 ~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~ 178 (269)
+.++..+|..++.+.+... .+.++||||+|++.+ ..+++.|.+. +++...+||.+...++..+.+
T Consensus 419 v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~s----------e~Ls~~L~~~---gi~~~vLnak~~~rEa~iia~ 485 (853)
T 2fsf_A 419 VYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKS----------ELVSNELTKA---GIKHNVLNAKFHANEAAIVAQ 485 (853)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHH----------HHHHHHHHHT---TCCCEECCTTCHHHHHHHHHT
T ss_pred EEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHH----------HHHHHHHHHC---CCCEEEecCChhHHHHHHHHh
Confidence 4455678999999888653 467899999999874 4588888887 788999999998888888888
Q ss_pred HHhcCCccEEEEeccccccCCCCCC-------------------------------------CeEEEecCCCCccccccc
Q 024287 179 EVRQGGGYLLVSTDIAARGIDLPET-------------------------------------THIYNFDLPRSAIDYLHR 221 (269)
Q Consensus 179 ~f~~~~~~iLv~T~~~~~Gidi~~~-------------------------------------~~Vi~~~~p~~~~~~~qr 221 (269)
.|+.| .|+|||++++||+||+.. .+||+++.|.+...|.||
T Consensus 486 agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr 563 (853)
T 2fsf_A 486 AGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQL 563 (853)
T ss_dssp TTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHH
T ss_pred cCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhh
Confidence 88887 699999999999999974 599999999999999999
Q ss_pred cccCCCCCCCCCCeEEEEecCchhH
Q 024287 222 AGRTGRKPFSDEKWTVTSIITSEEL 246 (269)
Q Consensus 222 ~GR~gR~~~~~~~g~~~~~~~~~~~ 246 (269)
.||+||.| ..|.+++|++..|.
T Consensus 564 ~GRTGRqG---d~G~s~~fls~eD~ 585 (853)
T 2fsf_A 564 RGRSGRQG---DAGSSRFYLSMEDA 585 (853)
T ss_dssp HTTSSGGG---CCEEEEEEEETTSG
T ss_pred ccccccCC---CCeeEEEEecccHH
Confidence 99999999 89999999987663
No 55
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.94 E-value=2.1e-27 Score=207.78 Aligned_cols=184 Identities=14% Similarity=0.218 Sum_probs=125.5
Q ss_pred ceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCccc
Q 024287 12 IFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKP 91 (269)
Q Consensus 12 ~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 91 (269)
...+++++++|+||+|++ ..+ . ......+.......+.|+++||||+++.+..+. ..+........
T Consensus 88 ~~~~~~l~~vViDEaH~~-~~~-~-~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~--------~~~~~i~~~~~--- 153 (431)
T 2v6i_A 88 GVRVPNYNLYIMDEAHFL-DPA-S-VAARGYIETRVSMGDAGAIFMTATPPGTTEAFP--------PSNSPIIDEET--- 153 (431)
T ss_dssp TCCCCCCSEEEEESTTCC-SHH-H-HHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSC--------CCSSCCEEEEC---
T ss_pred CccccCCCEEEEeCCccC-Ccc-H-HHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhc--------CCCCceeeccc---
Confidence 345899999999999975 222 1 222222222212368999999999987543221 11111111100
Q ss_pred CCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChh
Q 024287 92 LPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFN 171 (269)
Q Consensus 92 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~ 171 (269)
..+. .+...+...+... +++++|||++++.++. +++.|.+. +..+..+||+
T Consensus 154 ----------~~~~-~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~----------l~~~L~~~---~~~v~~lhg~---- 204 (431)
T 2v6i_A 154 ----------RIPD-KAWNSGYEWITEF-DGRTVWFVHSIKQGAE----------IGTCLQKA---GKKVLYLNRK---- 204 (431)
T ss_dssp ----------CCCS-SCCSSCCHHHHSC-SSCEEEECSSHHHHHH----------HHHHHHHT---TCCEEEESTT----
T ss_pred ----------cCCH-HHHHHHHHHHHcC-CCCEEEEeCCHHHHHH----------HHHHHHHc---CCeEEEeCCc----
Confidence 0011 1112222334333 5799999999997554 77778776 6789999997
Q ss_pred HHHHHHHHHhcCCccEEEEeccccccCCCCCCCe-----------------EEEecCCCCccccccccccCCCCCCCCCC
Q 024287 172 SRAASLLEVRQGGGYLLVSTDIAARGIDLPETTH-----------------IYNFDLPRSAIDYLHRAGRTGRKPFSDEK 234 (269)
Q Consensus 172 ~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~-----------------Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~ 234 (269)
+|.++++.|++|+.+|||||+++++|+|+| +.. ||+++.|.+.++|+||+||+||.|. ..
T Consensus 205 ~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~--~~ 281 (431)
T 2v6i_A 205 TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPE--KL 281 (431)
T ss_dssp THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTT--CC
T ss_pred cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCC--CC
Confidence 578899999999999999999999999999 554 6788999999999999999999973 24
Q ss_pred eEEEEec
Q 024287 235 WTVTSII 241 (269)
Q Consensus 235 g~~~~~~ 241 (269)
|.++++.
T Consensus 282 ~~~~~~~ 288 (431)
T 2v6i_A 282 GDIYAYS 288 (431)
T ss_dssp CCEEEEC
T ss_pred CeEEEEc
Confidence 4455554
No 56
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.94 E-value=3.2e-26 Score=209.49 Aligned_cols=216 Identities=17% Similarity=0.139 Sum_probs=147.6
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCC-chhhhHHHHHH----hh---hc-------------cCCCccEEEEec
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNS-SKQVSSLKKLL----AS---YS-------------SCNNRQTVFASA 59 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~-~~~~~~i~~i~----~~---~~-------------~~~~~q~i~~SA 59 (269)
||+|++.+..+. ++|+||+|++... +..+....+.+ .. ++ .....|++++||
T Consensus 316 p~~LlDyl~~~~-------llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SA 388 (664)
T 1c4o_A 316 PYTLLDYFPEDF-------LVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSA 388 (664)
T ss_dssp CCCGGGGSCTTC-------EEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEES
T ss_pred chHHHHHHhhcc-------EEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEec
Confidence 678888775443 8999999987632 11111111111 10 00 013579999999
Q ss_pred cCCchhhHHHHHHhhhcccCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhh
Q 024287 60 SIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKK 137 (269)
Q Consensus 60 Tl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~ 137 (269)
|.++..... . .........+... .. . .+...+...+...+...+... .+.++||||+|+..++.
T Consensus 389 T~~~~~~~~----~-----~~~~~~~~r~~~l-~~--p-~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~- 454 (664)
T 1c4o_A 389 TPGPFELAH----S-----GRVVEQIIRPTGL-LD--P-LVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEE- 454 (664)
T ss_dssp SCCHHHHHH----C-----SEEEEECSCTTCC-CC--C-EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHH-
T ss_pred CCCHHHHHh----h-----hCeeeeeeccCCC-CC--C-eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHH-
Confidence 987642110 0 1111111111111 11 1 111223344555555555432 46799999999987544
Q ss_pred cCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecC-----C
Q 024287 138 AGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDL-----P 212 (269)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~-----p 212 (269)
+.+.|.+. ++.+..+||+|++.+|.++++.|++|+.+|||||+++++|+|+|++++||++|. |
T Consensus 455 ---------L~~~L~~~---gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p 522 (664)
T 1c4o_A 455 ---------LTSFLVEH---GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFL 522 (664)
T ss_dssp ---------HHHHHHHT---TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGG
T ss_pred ---------HHHHHHhc---CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCC
Confidence 77888876 678999999999999999999999999999999999999999999999999997 8
Q ss_pred CCccccccccccCCCCCCCCCCeEEEEecCchhHHHHHHHH
Q 024287 213 RSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEELFVLQRYE 253 (269)
Q Consensus 213 ~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~~ 253 (269)
.+..+|+||+||+||.+ .|.+++++++.+......++
T Consensus 523 ~s~~~~iQr~GRagR~~----~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 523 RSERSLIQTIGRAARNA----RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp GSHHHHHHHHGGGTTST----TCEEEEECSSCCHHHHHHHH
T ss_pred CCHHHHHHHHCccCcCC----CCEEEEEEcCCCHHHHHHHH
Confidence 99999999999999984 68999999886555444443
No 57
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.94 E-value=1e-25 Score=216.77 Aligned_cols=203 Identities=11% Similarity=0.073 Sum_probs=147.0
Q ss_pred hCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCc
Q 024287 10 KHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAI 89 (269)
Q Consensus 10 ~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (269)
++.+.+++++++|+||+|++ + ....+.+..++ .+.++++||||+++....+.. ....+...+...+.
T Consensus 718 ~~~~~~~~l~lvIiDEaH~~---g---~~~~~~l~~l~--~~~~vl~lSATp~p~~l~~~~-----~~~~~~~~i~~~~~ 784 (1151)
T 2eyq_A 718 QSDVKFKDLGLLIVDEEHRF---G---VRHKERIKAMR--ANVDILTLTATPIPRTLNMAM-----SGMRDLSIIATPPA 784 (1151)
T ss_dssp HSCCCCSSEEEEEEESGGGS---C---HHHHHHHHHHH--TTSEEEEEESSCCCHHHHHHH-----TTTSEEEECCCCCC
T ss_pred hCCccccccceEEEechHhc---C---hHHHHHHHHhc--CCCCEEEEcCCCChhhHHHHH-----hcCCCceEEecCCC
Confidence 34578899999999999983 3 22344455554 678999999998665332221 11123332222211
Q ss_pred ccCCCcceeEEEEecCcchHHHHHHHHhhc-CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccC
Q 024287 90 KPLPSCLHHRFVICGKKMKYQTLLSLIQSD-APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEM 168 (269)
Q Consensus 90 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~ 168 (269)
. ...+...+....... ....++... .+++++||||+++.++ .+++.|.+.++ +..+..+||+|
T Consensus 785 ~--r~~i~~~~~~~~~~~---i~~~il~~l~~g~qvlvf~~~v~~~~----------~l~~~L~~~~p-~~~v~~lhg~~ 848 (1151)
T 2eyq_A 785 R--RLAVKTFVREYDSMV---VREAILREILRGGQVYYLYNDVENIQ----------KAAERLAELVP-EARIAIGHGQM 848 (1151)
T ss_dssp B--CBCEEEEEEECCHHH---HHHHHHHHHTTTCEEEEECCCSSCHH----------HHHHHHHHHCT-TSCEEECCSSC
T ss_pred C--ccccEEEEecCCHHH---HHHHHHHHHhcCCeEEEEECCHHHHH----------HHHHHHHHhCC-CCeEEEEeCCC
Confidence 1 223444444333222 222233322 4689999999998744 47778877765 46899999999
Q ss_pred ChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecC-CCCccccccccccCCCCCCCCCCeEEEEecCch
Q 024287 169 NFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDL-PRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSE 244 (269)
Q Consensus 169 ~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~-p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~ 244 (269)
++.+|+++++.|++|+.+|||||+++++|+|+|++++||.++. +.+..+|.||+||+||.| ..|.|++++++.
T Consensus 849 ~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g---~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 849 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH---HQAYAWLLTPHP 922 (1151)
T ss_dssp CHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTT---BCEEEEEEECCG
T ss_pred CHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCC---CceEEEEEECCc
Confidence 9999999999999999999999999999999999999999987 568899999999999998 789999988764
No 58
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.94 E-value=5.9e-27 Score=216.46 Aligned_cols=208 Identities=17% Similarity=0.180 Sum_probs=139.3
Q ss_pred ceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCccc
Q 024287 12 IFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKP 91 (269)
Q Consensus 12 ~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 91 (269)
.+.+++++++|+||+|++.... + ..+.. ...+.++++||||..+....+. .+...+...+...+..
T Consensus 485 ~~~~~~l~lVVIDEaHr~g~~q--r----~~l~~--~~~~~~vL~mSATp~p~tl~~~-----~~g~~~~s~i~~~p~~- 550 (780)
T 1gm5_A 485 DVHFKNLGLVIIDEQHRFGVKQ--R----EALMN--KGKMVDTLVMSATPIPRSMALA-----FYGDLDVTVIDEMPPG- 550 (780)
T ss_dssp CCCCSCCCEEEEESCCCC-----------CCCCS--SSSCCCEEEEESSCCCHHHHHH-----HTCCSSCEEECCCCSS-
T ss_pred hhhccCCceEEecccchhhHHH--H----HHHHH--hCCCCCEEEEeCCCCHHHHHHH-----HhCCcceeeeeccCCC-
Confidence 4678999999999999852211 1 11111 2357899999999766432211 1222232332221111
Q ss_pred CCCcceeEEEEecCcchHHHHHHHHhh--cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhh-hcCCCCceEEecccC
Q 024287 92 LPSCLHHRFVICGKKMKYQTLLSLIQS--DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSN-SYKGSSDVLLLEEEM 168 (269)
Q Consensus 92 ~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~v~~~h~~~ 168 (269)
...+...+. ...+...+.+.+.. ..+++++|||++.+..+.+ ....+..+++.|.+ .++ +..+..+||+|
T Consensus 551 -r~~i~~~~~---~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l--~~~~a~~l~~~L~~~~~~-~~~v~~lHG~m 623 (780)
T 1gm5_A 551 -RKEVQTMLV---PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKL--NVKSAVEMYEYLSKEVFP-EFKLGLMHGRL 623 (780)
T ss_dssp -CCCCEECCC---CSSTHHHHHHHHHHHTTTSCCBCCBCCCC----------CHHHHHHHSGGGSCC----CBCCCCSSS
T ss_pred -CcceEEEEe---ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhh--hHHHHHHHHHHHHhhhcC-CCcEEEEeCCC
Confidence 112322222 22334444444443 2467899999988754432 23346667777877 443 47899999999
Q ss_pred ChhHHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCC-CccccccccccCCCCCCCCCCeEEEEecCc
Q 024287 169 NFNSRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPR-SAIDYLHRAGRTGRKPFSDEKWTVTSIITS 243 (269)
Q Consensus 169 ~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~-~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~ 243 (269)
++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|. +.+.|.||+||+||.| ..|.|++++++
T Consensus 624 ~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g---~~g~~ill~~~ 696 (780)
T 1gm5_A 624 SQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGG---QEAYCFLVVGD 696 (780)
T ss_dssp CCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSS---TTCEEECCCCS
T ss_pred CHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCC---CCCEEEEEECC
Confidence 999999999999999999999999999999999999999999996 6888999999999998 78999999874
No 59
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.93 E-value=2.1e-26 Score=209.81 Aligned_cols=223 Identities=15% Similarity=0.133 Sum_probs=150.2
Q ss_pred CchhhHHHHhC--ce-ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcc
Q 024287 1 MGSLCQLIEKH--IF-KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWT 77 (269)
Q Consensus 1 pgrl~~~l~~~--~~-~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~ 77 (269)
|||+.+++... .+ ..+.++++||||+|++.+.+ ....+..++..++ ....+++++|||.+ .+..+....
T Consensus 220 pGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~-~g~~~~~~l~~l~-~~~i~il~~SAT~~-~i~~l~~~~----- 291 (677)
T 3rc3_A 220 NGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPA-RGWAWTRALLGLC-AEEVHLCGEPAAID-LVMELMYTT----- 291 (677)
T ss_dssp TCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTT-THHHHHHHHHHCC-EEEEEEEECGGGHH-HHHHHHHHH-----
T ss_pred CCcccceeEecHhHhhhcccCCEEEEecceecCCcc-chHHHHHHHHccC-ccceEEEeccchHH-HHHHHHHhc-----
Confidence 56666655442 12 24677999999999988776 3456666666553 25789999999953 233332211
Q ss_pred cCceeEEeecCcccCCCcceeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC
Q 024287 78 KSDVVHVHVNAIKPLPSCLHHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG 157 (269)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (269)
............. + . .+ ... .+ ..+... ..+.+|||++++.+ ..+++.|.+.
T Consensus 292 ~~~~~v~~~~r~~--~--l--~~---~~~-~l----~~l~~~-~~g~iIf~~s~~~i----------e~la~~L~~~--- 343 (677)
T 3rc3_A 292 GEEVEVRDYKRLT--P--I--SV---LDH-AL----ESLDNL-RPGDCIVCFSKNDI----------YSVSRQIEIR--- 343 (677)
T ss_dssp TCCEEEEECCCSS--C--E--EE---CSS-CC----CSGGGC-CTTEEEECSSHHHH----------HHHHHHHHHT---
T ss_pred CCceEEEEeeecc--h--H--HH---HHH-HH----HHHHhc-CCCCEEEEcCHHHH----------HHHHHHHHhc---
Confidence 1121111111000 0 0 00 000 00 111222 35568999998864 4477788775
Q ss_pred CCceEEecccCChhHHHHHHHHHhc--CCccEEEEeccccccCCCCCCCeEEEecC--------------CCCccccccc
Q 024287 158 SSDVLLLEEEMNFNSRAASLLEVRQ--GGGYLLVSTDIAARGIDLPETTHIYNFDL--------------PRSAIDYLHR 221 (269)
Q Consensus 158 ~~~v~~~h~~~~~~~r~~~~~~f~~--~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~--------------p~~~~~~~qr 221 (269)
+..+..+||+|++.+|.++++.|++ |..+|||||+++++|+|+ ++++||++++ |.+.++|.||
T Consensus 344 g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR 422 (677)
T 3rc3_A 344 GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQI 422 (677)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHH
T ss_pred CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHH
Confidence 6789999999999999999999999 889999999999999999 8999999998 7799999999
Q ss_pred cccCCCCCCCCCCeEEEEecCchhHHHHHHHHHHhcCccc
Q 024287 222 AGRTGRKPFSDEKWTVTSIITSEELFVLQRYENELKFKSE 261 (269)
Q Consensus 222 ~GR~gR~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (269)
+||+||.|..+..|.|+.+... +...+..+......+++
T Consensus 423 ~GRAGR~g~~g~~G~v~~l~~~-d~~~~~~~~~~~~~~i~ 461 (677)
T 3rc3_A 423 AGRAGRFSSRFKEGEVTTMNHE-DLSLLKEILKRPVDPIR 461 (677)
T ss_dssp HTTBTCTTSSCSSEEEEESSTT-HHHHHHHHHHSCCCCCC
T ss_pred hcCCCCCCCCCCCEEEEEEecc-hHHHHHHHHhcCcchhh
Confidence 9999999965556887776554 44454555444444443
No 60
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.93 E-value=5.1e-26 Score=207.62 Aligned_cols=128 Identities=14% Similarity=0.125 Sum_probs=109.0
Q ss_pred EEecCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHH
Q 024287 101 VICGKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLL 178 (269)
Q Consensus 101 ~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~ 178 (269)
+..+...|...+.+.+... .+.++||||+|++.+ +.+.+.|.+. +++...+||.+...++..+.+
T Consensus 438 v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~s----------E~Ls~~L~~~---Gi~~~vLnak~~~rEa~iia~ 504 (922)
T 1nkt_A 438 IYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERS----------EYLSRQFTKR---RIPHNVLNAKYHEQEATIIAV 504 (922)
T ss_dssp EESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHH----------HHHHHHHHHT---TCCCEEECSSCHHHHHHHHHT
T ss_pred EEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHH----------HHHHHHHHHC---CCCEEEecCChhHHHHHHHHh
Confidence 3445567888888888643 567899999999874 4588888887 788999999988777777777
Q ss_pred HHhcCCccEEEEeccccccCCCCCC----------------------------------------------------CeE
Q 024287 179 EVRQGGGYLLVSTDIAARGIDLPET----------------------------------------------------THI 206 (269)
Q Consensus 179 ~f~~~~~~iLv~T~~~~~Gidi~~~----------------------------------------------------~~V 206 (269)
.|+.| .|+|||++++||+||+.. .+|
T Consensus 505 agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhV 582 (922)
T 1nkt_A 505 AGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYV 582 (922)
T ss_dssp TTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEE
T ss_pred cCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEE
Confidence 78777 699999999999999975 499
Q ss_pred EEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhH
Q 024287 207 YNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEEL 246 (269)
Q Consensus 207 i~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~ 246 (269)
|+++.|.+...|.||.||+||.| ..|.+++|++..|.
T Consensus 583 I~te~pes~riy~qr~GRTGRqG---dpG~s~fflSleD~ 619 (922)
T 1nkt_A 583 LGTERHESRRIDNQLRGRSGRQG---DPGESRFYLSLGDE 619 (922)
T ss_dssp EECSCCSSHHHHHHHHHTSSGGG---CCEEEEEEEETTSH
T ss_pred EeccCCCCHHHHHHHhcccccCC---CCeeEEEEechhHH
Confidence 99999999999999999999999 89999999987665
No 61
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.92 E-value=1e-25 Score=199.64 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=104.1
Q ss_pred CcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCC
Q 024287 105 KKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGG 184 (269)
Q Consensus 105 ~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~ 184 (269)
...|...+.+++....++++||||++++.++. +.+.| .+..+||+++..+|.++++.|++|+
T Consensus 333 ~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~----------l~~~l--------~~~~~~g~~~~~~R~~~~~~F~~g~ 394 (472)
T 2fwr_A 333 SKNKIRKLREILERHRKDKIIIFTRHNELVYR----------ISKVF--------LIPAITHRTSREEREEILEGFRTGR 394 (472)
T ss_dssp CSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHH----------HHHHT--------TCCBCCSSSCSHHHHTHHHHHHHSS
T ss_pred ChHHHHHHHHHHHhCCCCcEEEEECCHHHHHH----------HHHHh--------CcceeeCCCCHHHHHHHHHHHhCCC
Confidence 34577888888888778999999999875433 44333 2557999999999999999999999
Q ss_pred ccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCch
Q 024287 185 GYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSE 244 (269)
Q Consensus 185 ~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~ 244 (269)
.+|||||+++++|+|+|++++||+++.|.++..|.||+||+||.|.......+|.+++++
T Consensus 395 ~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 395 FRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred CCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 999999999999999999999999999999999999999999998421567788888764
No 62
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.92 E-value=6.9e-25 Score=196.06 Aligned_cols=209 Identities=16% Similarity=0.154 Sum_probs=140.0
Q ss_pred HhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecC
Q 024287 9 EKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNA 88 (269)
Q Consensus 9 ~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (269)
..+...++++++||+||+|++.. ..+..++..+. ...+++++|||+++....+..... +. +........
T Consensus 217 ~~~~~~~~~~~liIiDE~H~~~~-----~~~~~il~~~~--~~~~~l~lSATp~~~~~~~~~~~~--~~--~~~~~~~~~ 285 (510)
T 2oca_A 217 KQPKEWFSQFGMMMNDECHLATG-----KSISSIISGLN--NCMFKFGLSGSLRDGKANIMQYVG--MF--GEIFKPVTT 285 (510)
T ss_dssp TSCGGGGGGEEEEEEETGGGCCH-----HHHHHHGGGCT--TCCEEEEEESCGGGCSSCHHHHHH--HH--CSEECCCCC
T ss_pred hchhhhhhcCCEEEEECCcCCCc-----ccHHHHHHhcc--cCcEEEEEEeCCCCCcccHHHhHH--hh--CCeEEeeCH
Confidence 33456788999999999998643 44666776654 678999999999776433221110 00 111111111
Q ss_pred c------ccCCCcceeEEEEec---------------------CcchHHHHHHHHhhc---CCCceEEEeeccchhhhhc
Q 024287 89 I------KPLPSCLHHRFVICG---------------------KKMKYQTLLSLIQSD---APESGIIFVGEQSEKSKKA 138 (269)
Q Consensus 89 ~------~~~~~~i~~~~~~~~---------------------~~~k~~~l~~ll~~~---~~~~~lIF~~s~~~~~~~~ 138 (269)
. ...+..+.......+ ...+...+.+++... .+.+++||++ .+.
T Consensus 286 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~----- 359 (510)
T 2oca_A 286 SKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSH----- 359 (510)
T ss_dssp C---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHH-----
T ss_pred HHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHH-----
Confidence 1 001111111111111 112334455555443 3445666666 443
Q ss_pred CCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEe-ccccccCCCCCCCeEEEecCCCCccc
Q 024287 139 GNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVST-DIAARGIDLPETTHIYNFDLPRSAID 217 (269)
Q Consensus 139 ~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T-~~~~~Gidi~~~~~Vi~~~~p~~~~~ 217 (269)
+..+.+.|.+. +..+..+||+|+..+|+++++.|++|+.+||||| +++++|+|+|++++||+++.|.++.+
T Consensus 360 -----~~~l~~~L~~~---~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~ 431 (510)
T 2oca_A 360 -----GKAIFDLIKNE---YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKII 431 (510)
T ss_dssp -----HHHHHHHHHTT---CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCH
T ss_pred -----HHHHHHHHHHc---CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHH
Confidence 45578888776 3479999999999999999999999999999999 99999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCeEEEEecC
Q 024287 218 YLHRAGRTGRKPFSDEKWTVTSIIT 242 (269)
Q Consensus 218 ~~qr~GR~gR~~~~~~~g~~~~~~~ 242 (269)
|.||+||+||.|..+....++.+.+
T Consensus 432 ~~Q~~GR~gR~g~~~~~v~i~~~~~ 456 (510)
T 2oca_A 432 VLQTIGRVLRKHGSKTIATVWDLID 456 (510)
T ss_dssp HHHHHHHHHTTTCCCCCCEEEEEEE
T ss_pred HHHHHhcccccCCCCceEEEEEeec
Confidence 9999999999985433455555544
No 63
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.91 E-value=5.1e-24 Score=202.43 Aligned_cols=127 Identities=15% Similarity=0.206 Sum_probs=108.9
Q ss_pred cchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCC-
Q 024287 106 KMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGG- 184 (269)
Q Consensus 106 ~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~- 184 (269)
..|...+.+++....++++||||++++.+ ..+.+.|.+.. ++.+..+||+|++.+|..+++.|++|+
T Consensus 488 ~~K~~~L~~ll~~~~~~k~iVF~~~~~~~----------~~l~~~L~~~~--g~~~~~lhG~~~~~~R~~~l~~F~~g~~ 555 (968)
T 3dmq_A 488 DPRVEWLMGYLTSHRSQKVLVICAKAATA----------LQLEQVLRERE--GIRAAVFHEGMSIIERDRAAAWFAEEDT 555 (968)
T ss_dssp SHHHHHHHHHHHHTSSSCCCEECSSTHHH----------HHHHHHHHTTT--CCCEEEECTTSCTTHHHHHHHHHHSTTS
T ss_pred cHHHHHHHHHHHhCCCCCEEEEeCcHHHH----------HHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhCCCC
Confidence 35788899999887789999999999864 44777777532 678999999999999999999999998
Q ss_pred -ccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchh
Q 024287 185 -GYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEE 245 (269)
Q Consensus 185 -~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~ 245 (269)
.+|||||+++++|+|+|++++||++|+|.++..|.||+||+||.|.. ....++.++.++.
T Consensus 556 ~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~-~~v~v~~~~~~~t 616 (968)
T 3dmq_A 556 GAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA-HDIQIHVPYLEKT 616 (968)
T ss_dssp SCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSC-SCCEEEEEEETTS
T ss_pred cccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCC-ceEEEEEecCCCh
Confidence 99999999999999999999999999999999999999999999954 2345555555443
No 64
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.91 E-value=4.8e-24 Score=193.79 Aligned_cols=224 Identities=12% Similarity=0.089 Sum_probs=130.9
Q ss_pred CchhhHHHH----hCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhH-HHHHH---
Q 024287 1 MGSLCQLIE----KHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRF-LHNCI--- 72 (269)
Q Consensus 1 pgrl~~~l~----~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~-l~~~~--- 72 (269)
|++|.+.+. .+.+...++++||+||||++...+ ...+..++..+ .+.+++++|||....... +...+
T Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~--~~~~~~il~~~---~~~~~l~lTATP~~~~~~~~~~~f~~~ 356 (590)
T 3h1t_A 282 YQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD--NSNWREILEYF---EPAFQIGMTATPLREDNRDTYRYFGNP 356 (590)
T ss_dssp GGGC------CCGGGGSCTTSCSEEEESCCC-----------CHHHHHHS---TTSEEEEEESSCSCTTTHHHHHHSCSC
T ss_pred hhhhccccccccccccCCCCccCEEEEECCccccccc--hHHHHHHHHhC---CcceEEEeccccccccchhHHHHcCCc
Confidence 456666554 345567789999999999886543 23445566554 457899999997654221 11111
Q ss_pred ----------hhhcccCceeEEeecCccc------C-------CCcceeEEEEecC-------cchHHH----HHHHHhh
Q 024287 73 ----------QQKWTKSDVVHVHVNAIKP------L-------PSCLHHRFVICGK-------KMKYQT----LLSLIQS 118 (269)
Q Consensus 73 ----------~~~~~~~~~~~~~~~~~~~------~-------~~~i~~~~~~~~~-------~~k~~~----l~~ll~~ 118 (269)
...+. .++....+..... . ...+....+.... ..+... +.+.+..
T Consensus 357 ~~~~~~~~~i~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~ 435 (590)
T 3h1t_A 357 IYTYSLRQGIDDGFL-APYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKR 435 (590)
T ss_dssp SEEECHHHHHHHTSS-CCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred eEecCHHHHhhCCcc-CCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHh
Confidence 00000 1111111110000 0 0000000000000 112222 3333433
Q ss_pred c-CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-----CCCceEEecccCChhHHHHHHHHHhcCCcc---EEE
Q 024287 119 D-APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-----GSSDVLLLEEEMNFNSRAASLLEVRQGGGY---LLV 189 (269)
Q Consensus 119 ~-~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~---iLv 189 (269)
. ..+++||||++++.|+. +++.|.+.+. .+-.+..+||.++. +|.+++++|++|+.+ |||
T Consensus 436 ~~~~~k~lVF~~~~~~a~~----------l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilv 504 (590)
T 3h1t_A 436 TDRFAKTIVFCVDQEHADE----------MRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILT 504 (590)
T ss_dssp HCTTSEEEEEESSHHHHHH----------HHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEE
T ss_pred cCCCccEEEEECCHHHHHH----------HHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEE
Confidence 3 35799999999997655 5555554422 12237788999864 799999999998765 889
Q ss_pred EeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCC--CCCCeEEEEec
Q 024287 190 STDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPF--SDEKWTVTSII 241 (269)
Q Consensus 190 ~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~--~~~~g~~~~~~ 241 (269)
||+++++|+|+|++++||+++.|.++..|+||+||+||.+. .+..+.++.++
T Consensus 505 tt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 505 TSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp ESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred ECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 99999999999999999999999999999999999999874 33556677777
No 65
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.88 E-value=9.9e-22 Score=176.22 Aligned_cols=169 Identities=15% Similarity=0.158 Sum_probs=128.4
Q ss_pred ccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCCCccee-EEEEecCcchHHHHHHHHhhc--CCCceEEEe
Q 024287 52 RQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHH-RFVICGKKMKYQTLLSLIQSD--APESGIIFV 128 (269)
Q Consensus 52 ~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~ 128 (269)
..+.+||+|+......+.+.+ ..+ ++.+....+ ...+.+ ..+..+..+|...+...+... .+.++||||
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY-----~l~--vv~IPtnkp-~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt 481 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVY-----GME--VVVIPTHKP-MIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGT 481 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHS-----CCC--EEECCCSSC-CCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred hHHeEECCCCchHHHHHHHHh-----CCe--EEEECCCCC-cceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 568999999987655443322 223 333332222 222333 345556678999999888753 568999999
Q ss_pred eccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccccCCCC-------
Q 024287 129 GEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAARGIDLP------- 201 (269)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~------- 201 (269)
+|++.++ .++..|.+. +++...+||+....++..+...++.| .|+|||++++||+||+
T Consensus 482 ~S~e~sE----------~Ls~~L~~~---Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~ 546 (822)
T 3jux_A 482 TSIEKSE----------LLSSMLKKK---GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAE 546 (822)
T ss_dssp SSHHHHH----------HHHHHHHTT---TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTT
T ss_pred CCHHHHH----------HHHHHHHHC---CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhh
Confidence 9999744 478888876 78899999997666666666666655 6999999999999998
Q ss_pred -CCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhH
Q 024287 202 -ETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEEL 246 (269)
Q Consensus 202 -~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~ 246 (269)
+..+||+++.|.+...|.||+||+||.| ..|.+++|++.+|.
T Consensus 547 ~GglhVInte~Pes~r~y~qriGRTGRqG---~~G~a~~fvsleD~ 589 (822)
T 3jux_A 547 LGGLCIIGTERHESRRIDNQLRGRAGRQG---DPGESIFFLSLEDD 589 (822)
T ss_dssp TTSCEEEESSCCSSHHHHHHHHTTSSCSS---CCCEEEEEEETTSH
T ss_pred cCCCEEEecCCCCCHHHHHHhhCccccCC---CCeeEEEEechhHH
Confidence 5569999999999999999999999999 89999999987764
No 66
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.87 E-value=6.5e-22 Score=176.37 Aligned_cols=127 Identities=15% Similarity=0.179 Sum_probs=100.0
Q ss_pred chHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcC-
Q 024287 107 MKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQG- 183 (269)
Q Consensus 107 ~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~- 183 (269)
.|...+.+++... .+.++||||++++.+ ..+.+.|.+.+ +..+..+||+++..+|.++++.|+++
T Consensus 325 ~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~----------~~l~~~l~~~~--~~~~~~~~g~~~~~~R~~~~~~F~~~~ 392 (500)
T 1z63_A 325 GKMIRTMEIIEEALDEGDKIAIFTQFVDMG----------KIIRNIIEKEL--NTEVPFLYGELSKKERDDIISKFQNNP 392 (500)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECSCHHHH----------HHHHHHHHHHH--TCCCCEEETTSCHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHccCCcEEEEEehHHHH----------HHHHHHHHHhh--CCCeEEEECCCCHHHHHHHHHHhcCCC
Confidence 3455556666543 567999999998863 44666666532 46788999999999999999999998
Q ss_pred Ccc-EEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchhH
Q 024287 184 GGY-LLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEEL 246 (269)
Q Consensus 184 ~~~-iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~~ 246 (269)
..+ +|++|+++++|+|+|.+++||++|.|+++..|.||+||++|.|+. +...++.++.++..
T Consensus 393 ~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~-~~v~v~~lv~~~ti 455 (500)
T 1z63_A 393 SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT-RNVIVHKLISVGTL 455 (500)
T ss_dssp TCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTT-SCEEEEEEEETTSH
T ss_pred CCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCC-CeeEEEEEEeCCCH
Confidence 454 799999999999999999999999999999999999999999965 56677888877644
No 67
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.83 E-value=6.6e-20 Score=150.27 Aligned_cols=128 Identities=14% Similarity=0.173 Sum_probs=96.8
Q ss_pred cCcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHh
Q 024287 104 GKKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVR 181 (269)
Q Consensus 104 ~~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~ 181 (269)
....|...+.+++... .+.++||||++... +..+...|.+.+ ++.+..+||+++..+|.++++.|+
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~----------~~~l~~~L~~~~--g~~~~~l~G~~~~~~R~~~i~~F~ 160 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDM----------GKIIRNIIEKEL--NTEVPFLYGELSKKERDDIISKFQ 160 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHH----------HHHHHHHHHHHH--CSCCCEECTTSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHH----------HHHHHHHHHHhc--CCcEEEEECCCCHHHHHHHHHHhc
Confidence 3457999999999876 67899999999875 444677776532 467889999999999999999999
Q ss_pred cC-Ccc-EEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCch
Q 024287 182 QG-GGY-LLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSE 244 (269)
Q Consensus 182 ~~-~~~-iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~ 244 (269)
++ ..+ +|++|+++++|+|++.+++||+||+|+++..|.||+||++|.|+. ....+|.+++.+
T Consensus 161 ~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~-~~v~v~~li~~~ 224 (271)
T 1z5z_A 161 NNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT-RNVIVHKLISVG 224 (271)
T ss_dssp HCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC---------------CCEEEEEEETT
T ss_pred CCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCC-CceEEEEEeeCC
Confidence 98 666 789999999999999999999999999999999999999999965 345677787765
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.82 E-value=5.5e-19 Score=161.64 Aligned_cols=123 Identities=12% Similarity=0.162 Sum_probs=103.5
Q ss_pred hHHHHHHHHhh---cCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCC
Q 024287 108 KYQTLLSLIQS---DAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGG 184 (269)
Q Consensus 108 k~~~l~~ll~~---~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~ 184 (269)
|...+..++.. ..+.++|||+++++. +..+.+.|... ++.+..+||+|+..+|.++++.|++|.
T Consensus 400 K~~~l~~ll~~~~~~~~~k~lIFs~~~~~----------~~~l~~~l~~~---g~~~~~l~G~~~~~~R~~~i~~F~~~~ 466 (644)
T 1z3i_X 400 KMLVLDYILAMTRTTTSDKVVLVSNYTQT----------LDLFEKLCRNR---RYLYVRLDGTMSIKKRAKIVERFNNPS 466 (644)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEESCHHH----------HHHHHHHHHHH---TCCEEEECSSCCHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEEccHHH----------HHHHHHHHHHC---CCCEEEEeCCCCHHHHHHHHHHhcCCC
Confidence 34444444443 346899999999875 44577777766 688999999999999999999999986
Q ss_pred c---cEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCch
Q 024287 185 G---YLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSE 244 (269)
Q Consensus 185 ~---~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~ 244 (269)
. .+|++|++++.|+|++.+++||+||.|+++..+.|++||++|.|+. +...+|.+++.+
T Consensus 467 ~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~-~~v~v~~lv~~~ 528 (644)
T 1z3i_X 467 SPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQK-KTCYIYRLLSTG 528 (644)
T ss_dssp CCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCC-SCEEEEEEEETT
T ss_pred CCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCC-CceEEEEEEECC
Confidence 5 4899999999999999999999999999999999999999999965 567788888765
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.1e-19 Score=165.65 Aligned_cols=135 Identities=21% Similarity=0.202 Sum_probs=112.7
Q ss_pred hHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCc
Q 024287 108 KYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGG 185 (269)
Q Consensus 108 k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~ 185 (269)
|...+.+++... .+.++||||..... +..+...|... ++.+..+||+++..+|.++++.|+++..
T Consensus 557 K~~~L~~lL~~~~~~g~kvLIFsq~~~~----------ld~L~~~L~~~---g~~~~~i~G~~~~~eR~~~i~~F~~~~~ 623 (800)
T 3mwy_W 557 KMVLLDQLLTRLKKDGHRVLIFSQMVRM----------LDILGDYLSIK---GINFQRLDGTVPSAQRRISIDHFNSPDS 623 (800)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEESCHHH----------HHHHHHHHHHH---TCCCEEESTTSCHHHHHHHHHTTSSTTC
T ss_pred HHHHHHHHHHHHhhCCCeEEEEechHHH----------HHHHHHHHHhC---CCCEEEEeCCCCHHHHHHHHHHhhCCCC
Confidence 556666777654 45799999999875 45577788766 7889999999999999999999998654
Q ss_pred ---cEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCch--hHHHHHHHHHHh
Q 024287 186 ---YLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSE--ELFVLQRYENEL 256 (269)
Q Consensus 186 ---~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~ 256 (269)
.+|++|.+++.|+|++.+++||+||.|+++..+.|++||+.|.|+. +...+|.+++.+ |...++...+..
T Consensus 624 ~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~-k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 624 NDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQK-NHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp SCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCC-SCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred CceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCC-ceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999965 677888888875 555555555554
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.76 E-value=5.6e-18 Score=160.64 Aligned_cols=71 Identities=14% Similarity=0.041 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCccEEEEeccccccCCCCCCCeEEEecCCCCccccccccccCCCCCCC-CCCeEEEEecCc
Q 024287 172 SRAASLLEVRQGGGYLLVSTDIAARGIDLPETTHIYNFDLPRSAIDYLHRAGRTGRKPFS-DEKWTVTSIITS 243 (269)
Q Consensus 172 ~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~~~~Vi~~~~p~~~~~~~qr~GR~gR~~~~-~~~g~~~~~~~~ 243 (269)
+|..++++|++|+.++||+|+.+.+|+|+|.+ .++.+|.|.+...|+|++||++|.+.. ...|.++.|+..
T Consensus 637 ~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 637 YYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp HHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred HHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 37788999999999999999999999999999 678899999999999999999999753 346999999874
No 71
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.21 E-value=1.2e-11 Score=100.19 Aligned_cols=93 Identities=23% Similarity=0.353 Sum_probs=65.4
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCC--CccEEEEeccCCchhhHHHHHHhhhccc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCN--NRQTVFASASIPQHRRFLHNCIQQKWTK 78 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~--~~q~i~~SATl~~~~~~l~~~~~~~~~~ 78 (269)
||+|.+++.++.+.+++++++|+||||++++++ +...+..++..+.... +.|++++|||+++.+..+...+.
T Consensus 158 p~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~-~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l----- 231 (253)
T 1wrb_A 158 PGRLVDFIEKNKISLEFCKYIVLDEADRMLDMG-FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFL----- 231 (253)
T ss_dssp HHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTT-CHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCc-hHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHc-----
Confidence 789999999999999999999999999998887 5588888888543223 78999999999998776655433
Q ss_pred CceeEEeecCcccCCCcceeE
Q 024287 79 SDVVHVHVNAIKPLPSCLHHR 99 (269)
Q Consensus 79 ~~~~~~~~~~~~~~~~~i~~~ 99 (269)
.++..+.+........++.|.
T Consensus 232 ~~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 232 YNYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp SSCEEEEEC------------
T ss_pred CCCEEEEECCCCCCcCCceec
Confidence 356777776665555566554
No 72
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.19 E-value=1.6e-11 Score=98.89 Aligned_cols=80 Identities=26% Similarity=0.394 Sum_probs=67.0
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||||.+++.++.+.+++++++|+||||++++++ +...+..++..++ .+.|++++|||+|+.+..+...+. .+
T Consensus 160 p~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~-~~~~~~~i~~~~~--~~~q~~~~SAT~~~~~~~~~~~~l-----~~ 231 (242)
T 3fe2_A 160 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMG-FEPQIRKIVDQIR--PDRQTLMWSATWPKEVRQLAEDFL-----KD 231 (242)
T ss_dssp HHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTT-CHHHHHHHHTTSC--SSCEEEEEESCCCHHHHHHHHHHC-----SS
T ss_pred HHHHHHHHHcCCCCcccccEEEEeCHHHHhhhC-cHHHHHHHHHhCC--ccceEEEEEeecCHHHHHHHHHHC-----CC
Confidence 799999999999999999999999999999888 5688999998875 689999999999998876665443 35
Q ss_pred eeEEeecC
Q 024287 81 VVHVHVNA 88 (269)
Q Consensus 81 ~~~~~~~~ 88 (269)
+..+.+..
T Consensus 232 ~~~i~~~~ 239 (242)
T 3fe2_A 232 YIHINIGA 239 (242)
T ss_dssp CEEEEECC
T ss_pred CEEEEecC
Confidence 66666553
No 73
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.13 E-value=4e-11 Score=99.66 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=64.0
Q ss_pred CchhhHHHHh-CceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccC
Q 024287 1 MGSLCQLIEK-HIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKS 79 (269)
Q Consensus 1 pgrl~~~l~~-~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~ 79 (269)
||||.+++.+ +.+++++++++|+||+|++++...+...+..++..++ .+.|+++||||+++.+..+...+. .
T Consensus 218 P~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~--~~~q~i~~SAT~~~~v~~~a~~~l-----~ 290 (300)
T 3fmo_B 218 PGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--RNCQMLLFSATFEDSVWKFAQKVV-----P 290 (300)
T ss_dssp HHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC--TTCEEEEEESCCCHHHHHHHHHHS-----S
T ss_pred HHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC--CCCEEEEEeccCCHHHHHHHHHHC-----C
Confidence 7999999976 6789999999999999999874336688888888775 789999999999998887665443 3
Q ss_pred ceeEEeec
Q 024287 80 DVVHVHVN 87 (269)
Q Consensus 80 ~~~~~~~~ 87 (269)
++..+.+.
T Consensus 291 ~p~~i~~~ 298 (300)
T 3fmo_B 291 DPNVIKLK 298 (300)
T ss_dssp SCEEEEEC
T ss_pred CCeEEEec
Confidence 55555543
No 74
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.11 E-value=5.5e-11 Score=94.74 Aligned_cols=67 Identities=33% Similarity=0.415 Sum_probs=59.1
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHH
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHN 70 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~ 70 (269)
||+|.+++.++.+.+++++++|+||||++++++ +...+..++..++ .+.|++++|||+|+.+..+..
T Consensus 151 p~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~-~~~~~~~i~~~~~--~~~~~l~~SAT~~~~~~~~~~ 217 (228)
T 3iuy_A 151 PGRLNDLQMNNSVNLRSITYLVIDEADKMLDME-FEPQIRKILLDVR--PDRQTVMTSATWPDTVRQLAL 217 (228)
T ss_dssp HHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTT-CHHHHHHHHHHSC--SSCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCcCcccceEEEEECHHHHhccc-hHHHHHHHHHhCC--cCCeEEEEEeeCCHHHHHHHH
Confidence 789999999999999999999999999999887 5588888888875 689999999999998776553
No 75
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.07 E-value=1e-10 Score=93.82 Aligned_cols=69 Identities=14% Similarity=0.296 Sum_probs=59.0
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHH
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCI 72 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~ 72 (269)
||+|.+++.++.+.+++++++|+||||++++.+ ....+..++..++ .+.|++++|||+|+.+..+...+
T Consensus 157 p~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~-~~~~l~~i~~~~~--~~~~~i~~SAT~~~~~~~~~~~~ 225 (237)
T 3bor_A 157 PGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRG-FKDQIYEIFQKLN--TSIQVVLLSATMPTDVLEVTKKF 225 (237)
T ss_dssp HHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTT-CHHHHHHHHHHSC--TTCEEEEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcCcccCcEEEECCchHhhccC-cHHHHHHHHHhCC--CCCeEEEEEEecCHHHHHHHHHH
Confidence 789999999999999999999999999998777 4477888888765 78999999999999877665443
No 76
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.06 E-value=1.5e-10 Score=91.61 Aligned_cols=69 Identities=19% Similarity=0.402 Sum_probs=59.1
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHH
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCI 72 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~ 72 (269)
||+|.+++.++.+.+++++++|+||||++.+++ ....+..++..++ .+.|++++|||+|+.+..+...+
T Consensus 134 p~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~-~~~~l~~i~~~~~--~~~~~l~~SAT~~~~~~~~~~~~ 202 (219)
T 1q0u_A 134 PGRINDFIREQALDVHTAHILVVDEADLMLDMG-FITDVDQIAARMP--KDLQMLVFSATIPEKLKPFLKKY 202 (219)
T ss_dssp HHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTT-CHHHHHHHHHTSC--TTCEEEEEESCCCGGGHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCcceEEEEcCchHHhhhC-hHHHHHHHHHhCC--cccEEEEEecCCCHHHHHHHHHH
Confidence 789999999999999999999999999998877 4578888888775 67899999999999877655433
No 77
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.06 E-value=9.6e-11 Score=93.52 Aligned_cols=66 Identities=23% Similarity=0.329 Sum_probs=57.5
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHH
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFL 68 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l 68 (269)
||+|.+++.++.+.+++++++|+||+|++++++.+...+..++..++ .+.|++++|||+|+.+..+
T Consensus 150 p~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~--~~~~~l~lSAT~~~~~~~~ 215 (230)
T 2oxc_A 150 PGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP--ASKQMLAVSATYPEFLANA 215 (230)
T ss_dssp HHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSC--SSCEEEEEESCCCHHHHHH
T ss_pred HHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCC--CCCeEEEEEeccCHHHHHH
Confidence 78999999999999999999999999999888756688888888775 6889999999999876544
No 78
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.04 E-value=1.9e-10 Score=90.06 Aligned_cols=69 Identities=25% Similarity=0.374 Sum_probs=58.5
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHH
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCI 72 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~ 72 (269)
||++.+++.++.+.+++++++|+||+|++.+.+ ....+..++..++ .+.|++++|||+++.+..+.+.+
T Consensus 128 ~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~-~~~~~~~i~~~~~--~~~~~i~~SAT~~~~~~~~~~~~ 196 (207)
T 2gxq_A 128 PGRALDYLRQGVLDLSRVEVAVLDEADEMLSMG-FEEEVEALLSATP--PSRQTLLFSATLPSWAKRLAERY 196 (207)
T ss_dssp HHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTT-CHHHHHHHHHTSC--TTSEEEEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcchhhceEEEEEChhHhhccc-hHHHHHHHHHhCC--ccCeEEEEEEecCHHHHHHHHHH
Confidence 688999999999999999999999999988776 4578888887764 68999999999999877665433
No 79
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.02 E-value=3.9e-10 Score=88.24 Aligned_cols=68 Identities=29% Similarity=0.473 Sum_probs=58.1
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHH
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNC 71 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~ 71 (269)
||+|.+++.++.+.+++++++|+||+|++.+.+ ....+..++..++ .+.|++++|||+|+.+..+...
T Consensus 130 ~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~-~~~~l~~i~~~~~--~~~~~l~~SAT~~~~~~~~~~~ 197 (206)
T 1vec_A 130 PGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD-FVQIMEDIILTLP--KNRQILLYSATFPLSVQKFMNS 197 (206)
T ss_dssp HHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT-THHHHHHHHHHSC--TTCEEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC-cHHHHHHHHHhCC--ccceEEEEEeeCCHHHHHHHHH
Confidence 689999999999999999999999999988876 5588888888765 6899999999999887665543
No 80
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.02 E-value=2.4e-10 Score=90.67 Aligned_cols=79 Identities=18% Similarity=0.333 Sum_probs=62.2
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhcccCc
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKWTKSD 80 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~~~~~ 80 (269)
||+|.+.+.++.+.+++++++|+||||++.+++ ....+..++..++ .+.|++++|||+++.+..+...+. .+
T Consensus 139 p~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~-~~~~l~~i~~~~~--~~~~~i~lSAT~~~~~~~~~~~~~-----~~ 210 (224)
T 1qde_A 139 PGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG-FKEQIYQIFTLLP--PTTQVVLLSATMPNDVLEVTTKFM-----RN 210 (224)
T ss_dssp HHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT-CHHHHHHHHHHSC--TTCEEEEEESSCCHHHHHHHHHHC-----SS
T ss_pred HHHHHHHHHhCCcchhhCcEEEEcChhHHhhhh-hHHHHHHHHHhCC--ccCeEEEEEeecCHHHHHHHHHHC-----CC
Confidence 688999999999999999999999999988877 4477888887765 689999999999998776654432 34
Q ss_pred eeEEeec
Q 024287 81 VVHVHVN 87 (269)
Q Consensus 81 ~~~~~~~ 87 (269)
+..+.+.
T Consensus 211 p~~i~~~ 217 (224)
T 1qde_A 211 PVRILVK 217 (224)
T ss_dssp CEEEC--
T ss_pred CEEEEec
Confidence 4555444
No 81
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.01 E-value=3.3e-10 Score=89.68 Aligned_cols=68 Identities=15% Similarity=0.308 Sum_probs=57.3
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHH
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHN 70 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~ 70 (269)
||+|.+++.++.+.+++++++|+||||+++++......+..++...+ .+.|++++|||+++.+..+.+
T Consensus 142 ~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~--~~~~~i~~SAT~~~~~~~~~~ 209 (220)
T 1t6n_A 142 PGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP--HEKQVMMFSATLSKEIRPVCR 209 (220)
T ss_dssp HHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC--SSSEEEEEESCCCTTTHHHHH
T ss_pred HHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCC--CcCeEEEEEeecCHHHHHHHH
Confidence 68899999999999999999999999999875435677888887764 689999999999998776543
No 82
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.00 E-value=3.4e-10 Score=91.47 Aligned_cols=69 Identities=26% Similarity=0.403 Sum_probs=58.1
Q ss_pred CchhhHHHHh-CceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHH
Q 024287 1 MGSLCQLIEK-HIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCI 72 (269)
Q Consensus 1 pgrl~~~l~~-~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~ 72 (269)
||+|.+++.+ +.+.+++++++|+||||++.+.+ +...+..++..++ .+.|++++|||+++.+..+...+
T Consensus 169 p~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~-~~~~l~~i~~~~~--~~~~~l~~SAT~~~~v~~~~~~~ 238 (249)
T 3ber_A 169 PGRLIDHLENTKGFNLRALKYLVMDEADRILNMD-FETEVDKILKVIP--RDRKTFLFSATMTKKVQKLQRAA 238 (249)
T ss_dssp HHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTT-CHHHHHHHHHSSC--SSSEEEEEESSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCccccCEEEEcChhhhhccC-hHHHHHHHHHhCC--CCCeEEEEeccCCHHHHHHHHHH
Confidence 6899999987 56789999999999999998877 5588888888775 67999999999999877665443
No 83
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.99 E-value=2.2e-10 Score=93.34 Aligned_cols=68 Identities=26% Similarity=0.346 Sum_probs=58.8
Q ss_pred CchhhHHHHhCc-eecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHH
Q 024287 1 MGSLCQLIEKHI-FKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNC 71 (269)
Q Consensus 1 pgrl~~~l~~~~-~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~ 71 (269)
|||+.+++.+.. +.+++++++|+||||++++++ +...+..++..++ ...|+++||||+|+.+..+...
T Consensus 184 p~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~-~~~~l~~i~~~~~--~~~q~l~~SAT~~~~v~~~~~~ 252 (262)
T 3ly5_A 184 PGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVG-FEEELKQIIKLLP--TRRQTMLFSATQTRKVEDLARI 252 (262)
T ss_dssp HHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTT-CHHHHHHHHHHSC--SSSEEEEECSSCCHHHHHHHHH
T ss_pred HHHHHHHHHccCCcccccCCEEEEcChHHHhhhh-HHHHHHHHHHhCC--CCCeEEEEEecCCHHHHHHHHH
Confidence 789999888864 789999999999999999888 5588889988875 6799999999999988876653
No 84
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.96 E-value=5.8e-10 Score=89.25 Aligned_cols=67 Identities=24% Similarity=0.387 Sum_probs=56.6
Q ss_pred CchhhHHHHhC-ceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHH
Q 024287 1 MGSLCQLIEKH-IFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHN 70 (269)
Q Consensus 1 pgrl~~~l~~~-~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~ 70 (269)
||+|.+++.++ .+.+++++++|+||+|++.+++ +...+..++..++ .+.|++++|||+++.+..+..
T Consensus 154 p~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~-~~~~~~~i~~~~~--~~~~~l~~SAT~~~~~~~~~~ 221 (236)
T 2pl3_A 154 PGRLLQHMDETVSFHATDLQMLVLDEADRILDMG-FADTMNAVIENLP--KKRQTLLFSATQTKSVKDLAR 221 (236)
T ss_dssp HHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTT-THHHHHHHHHTSC--TTSEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccccccEEEEeChHHHhcCC-cHHHHHHHHHhCC--CCCeEEEEEeeCCHHHHHHHH
Confidence 68898888775 5789999999999999998877 4478888888875 689999999999998776554
No 85
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.96 E-value=6.9e-10 Score=89.29 Aligned_cols=81 Identities=21% Similarity=0.258 Sum_probs=61.7
Q ss_pred CchhhHHHHhC--ceecCcccEEEEeccccccCCc--hhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHHhhhc
Q 024287 1 MGSLCQLIEKH--IFKLESVQVLVIDEVDFLFNSS--KQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCIQQKW 76 (269)
Q Consensus 1 pgrl~~~l~~~--~~~l~~~~~lViDE~~~l~~~~--~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~~~~~ 76 (269)
||+|.+++.++ .+.+++++++|+||||++.+++ .....+..++.... ..+.|+++||||+|+.+..+...+.
T Consensus 157 p~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~SAT~~~~v~~~~~~~l--- 232 (245)
T 3dkp_A 157 PNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT-SHKVRRAMFSATFAYDVEQWCKLNL--- 232 (245)
T ss_dssp HHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC-CTTCEEEEEESSCCHHHHHHHHHHS---
T ss_pred HHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC-CCCcEEEEEeccCCHHHHHHHHHhC---
Confidence 78999999887 5789999999999999988742 25577777776553 3678999999999998776654332
Q ss_pred ccCceeEEeec
Q 024287 77 TKSDVVHVHVN 87 (269)
Q Consensus 77 ~~~~~~~~~~~ 87 (269)
.++..+.+.
T Consensus 233 --~~p~~i~~~ 241 (245)
T 3dkp_A 233 --DNVISVSIG 241 (245)
T ss_dssp --SSCEEEEEC
T ss_pred --CCCEEEEeC
Confidence 355555554
No 86
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.69 E-value=1.2e-08 Score=81.59 Aligned_cols=59 Identities=20% Similarity=0.368 Sum_probs=46.3
Q ss_pred CchhhHHHHhCceecCcccEEEEeccccc-cCCchhhhHHHHHHhhhccCCCccEEEEeccCCchh
Q 024287 1 MGSLCQLIEKHIFKLESVQVLVIDEVDFL-FNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHR 65 (269)
Q Consensus 1 pgrl~~~l~~~~~~l~~~~~lViDE~~~l-~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~ 65 (269)
||||.+++.. .+++++++|+||+|.+ ++.++....+..++... .+.|++++|||++...
T Consensus 163 pg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~---~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 163 VGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY---PEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC---TTSEEEEEECSSCCHH
T ss_pred HHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC---CCCeEEEEecCCCHHH
Confidence 7999999987 4999999999999975 55554435566666553 5789999999999764
No 87
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.36 E-value=4.6e-06 Score=75.79 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=64.2
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec--ccccc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD--IAARG 197 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~--~~~~G 197 (269)
.+++++||++|...++.++..+. . +... ...+++..++.++++.|+ +.-.||++|. .+++|
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~-----------~----~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EG 509 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVS-----------F----EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEG 509 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCC-----------S----CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC---
T ss_pred CCCCEEEEeCCHHHHHHHHHHHH-----------h----cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceecc
Confidence 36789999999887655443322 1 1111 344556678899999999 8888999986 89999
Q ss_pred CCCCCC--CeEEEecCCCCc-----------------c----cc--------ccccccCCCCCCCCCCeEEEEe
Q 024287 198 IDLPET--THIYNFDLPRSA-----------------I----DY--------LHRAGRTGRKPFSDEKWTVTSI 240 (269)
Q Consensus 198 idi~~~--~~Vi~~~~p~~~-----------------~----~~--------~qr~GR~gR~~~~~~~g~~~~~ 240 (269)
||+|+- ..||...+|... . .| .|-+||+-|... ..|.++++
T Consensus 510 iD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~--D~G~v~ll 581 (620)
T 4a15_A 510 INFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAE--DTGACVIL 581 (620)
T ss_dssp -----CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTT--CCEEEEEE
T ss_pred ccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCC--ceEEEEEE
Confidence 999865 578888877431 0 12 478899999852 57765544
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.35 E-value=8.1e-07 Score=79.57 Aligned_cols=100 Identities=17% Similarity=0.210 Sum_probs=59.2
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEE--Eecccccc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLV--STDIAARG 197 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv--~T~~~~~G 197 (269)
.+++++||++|...++.+ .+.+.. .. ...+|.. ..|.++++.|+++. .+|+ +|..+++|
T Consensus 383 ~~g~~lvff~S~~~~~~v----------~~~l~~-----~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EG 443 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESV----------RIHLSG-----IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEG 443 (540)
T ss_dssp CSSEEEEEESCHHHHHHH----------HTTCTT-----SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-------
T ss_pred CCCCEEEEeCCHHHHHHH----------HHHhcc-----Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecc
Confidence 467999999998865553 332221 22 3455554 46788999999865 5776 88999999
Q ss_pred CCCCC----CCeEEEecCCCCcc------------------------------ccccccccCCCCCCCCCCeEEEEe
Q 024287 198 IDLPE----TTHIYNFDLPRSAI------------------------------DYLHRAGRTGRKPFSDEKWTVTSI 240 (269)
Q Consensus 198 idi~~----~~~Vi~~~~p~~~~------------------------------~~~qr~GR~gR~~~~~~~g~~~~~ 240 (269)
||+|+ +++||++++|.... ...|.+||+.|... ..|.++++
T Consensus 444 iD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~--D~g~v~ll 518 (540)
T 2vl7_A 444 VEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPN--DYVKIYLC 518 (540)
T ss_dssp --------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTT--CCCEEEEE
T ss_pred eecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCC--ccEEEEEE
Confidence 99997 68899999885322 23478899999852 56765543
No 89
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.20 E-value=2.2e-05 Score=72.76 Aligned_cols=78 Identities=12% Similarity=0.084 Sum_probs=44.8
Q ss_pred ccEEEEeccCCchhhHHHHHHhhhcccCceeEEeecCcccCCCcceeE-EEEecCcchHHHHHHHHhhc--CCCceEEEe
Q 024287 52 RQTVFASASIPQHRRFLHNCIQQKWTKSDVVHVHVNAIKPLPSCLHHR-FVICGKKMKYQTLLSLIQSD--APESGIIFV 128 (269)
Q Consensus 52 ~q~i~~SATl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~ 128 (269)
..+.+||.|.......+.+.+ .-++ +.+....+. ...... .+..+...|+.++.+-+... .+.++||+|
T Consensus 379 ~kLsGMTGTA~tE~~Ef~~iY-----~l~V--v~IPTn~p~-~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT 450 (997)
T 2ipc_A 379 EKRAGMTGTAKTEEKEFQEIY-----GMDV--VVVPTNRPV-IRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGT 450 (997)
T ss_dssp SEEEEEESSCGGGHHHHHHHH-----CCCE--EECCCSSCC-CCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred hHheecCCCchHHHHHHHHHh-----CCCE--EEcCCCCCc-ccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEe
Confidence 578889999876544443322 2232 333322222 122222 23334567888777666543 478999999
Q ss_pred eccchhhhh
Q 024287 129 GEQSEKSKK 137 (269)
Q Consensus 129 ~s~~~~~~~ 137 (269)
.|++..+.+
T Consensus 451 ~SIe~SE~L 459 (997)
T 2ipc_A 451 ISIEKSERL 459 (997)
T ss_dssp SSHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999976654
No 90
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.09 E-value=2.5e-06 Score=66.64 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=35.1
Q ss_pred CchhhHHHHhCc------eecCcccEEEEeccccccCCchhhhHHHHHHhhhc-----------cCCCccEEEEecc
Q 024287 1 MGSLCQLIEKHI------FKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS-----------SCNNRQTVFASAS 60 (269)
Q Consensus 1 pgrl~~~l~~~~------~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~-----------~~~~~q~i~~SAT 60 (269)
|++|.+.+..+. +.+.+++++|+||+|++.+.++....+..++.... .....+++++|||
T Consensus 140 ~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 140 AQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 467777777654 67899999999999998766544333333332220 1257899999998
No 91
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.96 E-value=0.00012 Score=65.77 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=49.4
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecc-cCChhHHHHHHHHHhcCCccEEEEe--ccccc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEE-EMNFNSRAASLLEVRQGGGYLLVST--DIAAR 196 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~-~~~~~~r~~~~~~f~~~~~~iLv~T--~~~~~ 196 (269)
.++.++||++|...++.++ + . .+..+ ...+ +++ +.+.++.|+...-.||++| ..+++
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~----------~----~--~~~~v-~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~E 451 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVM----------S----R--ISLPK-YVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAE 451 (551)
T ss_dssp CSSEEEEEESCHHHHHHHH----------T----T--CCSSE-EECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCC
T ss_pred CCCCEEEEecCHHHHHHHH----------H----h--cCCcE-EEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecc
Confidence 5689999999987654432 1 1 12233 3333 344 3556778864445799998 58999
Q ss_pred cCCCC-----CCCeEEEecCCC
Q 024287 197 GIDLP-----ETTHIYNFDLPR 213 (269)
Q Consensus 197 Gidi~-----~~~~Vi~~~~p~ 213 (269)
|||+| ....||...+|.
T Consensus 452 GiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 452 GIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp SSCCEETTEESEEEEEEESCCC
T ss_pred cccccccCCcceeEEEEEcCCC
Confidence 99999 357888887664
No 92
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.72 E-value=3.2e-05 Score=63.22 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=39.6
Q ss_pred CceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHH
Q 024287 11 HIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLH 69 (269)
Q Consensus 11 ~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~ 69 (269)
....+++++++|+||||++.. ..+..++..+. ...+++++|||+++....+.
T Consensus 219 ~~~~~~~~~~vIiDEaH~~~~-----~~~~~il~~~~--~~~~~l~lSATp~~~~~~~~ 270 (282)
T 1rif_A 219 PKEWFSQFGMMMNDECHLATG-----KSISSIISGLN--NCMFKFGLSGSLRDGKANIM 270 (282)
T ss_dssp CGGGGGGEEEEEEETGGGCCH-----HHHHHHTTTCT--TCCEEEEECSSCCTTSTTHH
T ss_pred HHHHHhhCCEEEEECCccCCc-----ccHHHHHHHhh--cCCeEEEEeCCCCCcchHHH
Confidence 344678899999999998752 46667777664 57999999999987755443
No 93
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.45 E-value=0.00082 Score=55.51 Aligned_cols=126 Identities=10% Similarity=-0.001 Sum_probs=81.0
Q ss_pred CcchHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhc
Q 024287 105 KKMKYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQ 182 (269)
Q Consensus 105 ~~~k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~ 182 (269)
...|+..|.++|... .+.+++||++..+. ...+.+++... ++....+.|.....+ .+ -.+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~----------LDilE~~l~~~---~~~y~RlDG~~~~~~-~k----~~~ 168 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRT----------MDLLEALLLGN---KVHIKRYDGHSIKSA-AA----AND 168 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHH----------HHHHHHHHTTS---SCEEEESSSCCC------------C
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhH----------HHHHHHHHhcC---CCceEeCCCCchhhh-hh----ccc
Confidence 456888888888754 35699999998664 45566666654 678888888854432 21 124
Q ss_pred CCccEEEEeccccccCC-----CCCCCeEEEecCCCCcccc-ccccccCCCCCC-CCCCeEEEEecCchhHHH
Q 024287 183 GGGYLLVSTDIAARGID-----LPETTHIYNFDLPRSAIDY-LHRAGRTGRKPF-SDEKWTVTSIITSEELFV 248 (269)
Q Consensus 183 ~~~~iLv~T~~~~~Gid-----i~~~~~Vi~~~~p~~~~~~-~qr~GR~gR~~~-~~~~g~~~~~~~~~~~~~ 248 (269)
+...+.+.|....-|+| +..++.||-||.-+++..= +|.+-|+-|.|. .++.-.+|-+++.+..+.
T Consensus 169 ~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 169 FSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 45556565777777776 6788999999988888774 776666666531 125667888887766555
No 94
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.93 E-value=0.00077 Score=53.50 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=29.0
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCch
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQH 64 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~ 64 (269)
++++++||||+|.+.+.. ...++..+ ...+++++|||+++.
T Consensus 191 ~~~~llIiDEaH~l~~~~-----~~~i~~~~---~~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 191 NRFMLLIFDEVHHLPAES-----YVQIAQMS---IAPFRLGLTATFERE 231 (237)
T ss_dssp TTCSEEEEECSSCCCTTT-----HHHHHHTC---CCSEEEEEEESCC--
T ss_pred ccCCEEEEECCccCCChH-----HHHHHHhc---cCCEEEEEecCCCCC
Confidence 468999999999876544 22344443 467899999998754
No 95
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.84 E-value=0.083 Score=49.21 Aligned_cols=78 Identities=10% Similarity=0.003 Sum_probs=60.8
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc-cccC
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA-ARGI 198 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~-~~Gi 198 (269)
+.+++|.++++.-|.. ..+.+.+.+. .++.+..+||+++..+|...++.+.+|...|+|+|... ...+
T Consensus 417 g~qvlvlaPtr~La~Q----------~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~ 486 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQ----------HYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV 486 (780)
T ss_dssp TSCEEEECSCHHHHHH----------HHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCC
T ss_pred CCeEEEEeCcHHHHHH----------HHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhh
Confidence 5789999999886544 4444444432 25789999999999999999999999999999999864 3457
Q ss_pred CCCCCCeEEE
Q 024287 199 DLPETTHIYN 208 (269)
Q Consensus 199 di~~~~~Vi~ 208 (269)
++.++.+||.
T Consensus 487 ~~~~l~lVVI 496 (780)
T 1gm5_A 487 HFKNLGLVII 496 (780)
T ss_dssp CCSCCCEEEE
T ss_pred hccCCceEEe
Confidence 7788887773
No 96
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.45 E-value=0.19 Score=42.89 Aligned_cols=79 Identities=5% Similarity=0.006 Sum_probs=58.6
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecccc----
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAA---- 195 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~---- 195 (269)
.+.+++|.++++.-+.. +.+.+.+....++.+..+||+.+..++....+.+..|...|+|+|.-.-
T Consensus 63 ~~~~~lil~Pt~~L~~q----------~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l 132 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQ----------TLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNR 132 (414)
T ss_dssp TTCCEEEEESSHHHHHH----------HHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCH
T ss_pred CCCEEEEEECCHHHHHH----------HHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHH
Confidence 46789999999886544 4555555332367899999999999988888999999899999998532
Q ss_pred ccCCCCCCCeEEE
Q 024287 196 RGIDLPETTHIYN 208 (269)
Q Consensus 196 ~Gidi~~~~~Vi~ 208 (269)
.-++...+++||.
T Consensus 133 ~~~~~~~~~~iVi 145 (414)
T 3oiy_A 133 EKLSQKRFDFVFV 145 (414)
T ss_dssp HHHTTCCCSEEEE
T ss_pred HHhccccccEEEE
Confidence 1244556777663
No 97
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.33 E-value=0.42 Score=46.58 Aligned_cols=78 Identities=10% Similarity=0.132 Sum_probs=59.4
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC-CCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc-ccc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG-SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA-ARG 197 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~-~~G 197 (269)
.+.+++|.++++.-|.. ..+.+.+.+.. +..+..++|..+..++...++.+..|...|+|+|... ...
T Consensus 651 ~g~~vlvlvPt~~La~Q----------~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~ 720 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQ----------HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 720 (1151)
T ss_dssp TTCEEEEECSSHHHHHH----------HHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSC
T ss_pred hCCeEEEEechHHHHHH----------HHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCC
Confidence 45689999999876444 45555544432 4678899999999999999999999999999999644 445
Q ss_pred CCCCCCCeEE
Q 024287 198 IDLPETTHIY 207 (269)
Q Consensus 198 idi~~~~~Vi 207 (269)
+.+.+..+||
T Consensus 721 ~~~~~l~lvI 730 (1151)
T 2eyq_A 721 VKFKDLGLLI 730 (1151)
T ss_dssp CCCSSEEEEE
T ss_pred ccccccceEE
Confidence 7777777666
No 98
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.12 E-value=0.47 Score=46.01 Aligned_cols=79 Identities=5% Similarity=0.006 Sum_probs=59.7
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecccc----
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAA---- 195 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~---- 195 (269)
.+.+++|.++++.-|.. +.+.+.+....++.+..+||+++..+|....+.+..|...|+|+|.---
T Consensus 120 ~~~~~Lil~PtreLa~Q----------~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l 189 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQ----------TLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNR 189 (1104)
T ss_dssp TTCCEEEEESSHHHHHH----------HHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSH
T ss_pred cCCeEEEEechHHHHHH----------HHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 46789999999986544 5566665333457899999999999999999999999999999997422
Q ss_pred ccCCCCCCCeEEE
Q 024287 196 RGIDLPETTHIYN 208 (269)
Q Consensus 196 ~Gidi~~~~~Vi~ 208 (269)
.-+++.++++||.
T Consensus 190 ~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 190 EKLSQKRFDFVFV 202 (1104)
T ss_dssp HHHHTSCCSEEEE
T ss_pred HhhcccCcCEEEE
Confidence 1144567777774
No 99
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=87.08 E-value=0.19 Score=47.11 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=29.0
Q ss_pred eEEEecCCCCccccccccccCCCCCCCCCCeEEEEecCchh
Q 024287 205 HIYNFDLPRSAIDYLHRAGRTGRKPFSDEKWTVTSIITSEE 245 (269)
Q Consensus 205 ~Vi~~~~p~~~~~~~qr~GR~gR~~~~~~~g~~~~~~~~~~ 245 (269)
+||--..+.|..-=-|-.||+||+| ..|..-++++-+|
T Consensus 662 hVIGTeRhESrRIDnQLRGRaGRQG---DPGsSrF~LSLeD 699 (997)
T 2ipc_A 662 FIIGTERHESRRIDNQLRGRAGRQG---DPGGSRFYVSFDD 699 (997)
T ss_dssp CEEESSCCSSHHHHHHHHHTSSCSS---CCCEEEEEEESSS
T ss_pred EEEeccCCchHHHHHHHhcccccCC---CCCCeEEEEECCh
Confidence 6776666777777778899999999 7788777776443
No 100
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=84.83 E-value=7.6 Score=30.28 Aligned_cols=75 Identities=7% Similarity=0.045 Sum_probs=47.2
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc-----
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI----- 193 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~----- 193 (269)
.+.+++|.++++.-+.. +.+.+.+... .+..+..++|+.+...+.... .+...|+|+|.-
T Consensus 110 ~~~~~lil~Ptr~L~~q----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~ 175 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQ----------ISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDH 175 (249)
T ss_dssp CSSCEEEECSSHHHHHH----------HHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHH
T ss_pred CCceEEEEeCCHHHHHH----------HHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHH
Confidence 35679999999886555 3333332221 156788899998865543322 246789999963
Q ss_pred cc--ccCCCCCCCeEEE
Q 024287 194 AA--RGIDLPETTHIYN 208 (269)
Q Consensus 194 ~~--~Gidi~~~~~Vi~ 208 (269)
+. .++++..++++|.
T Consensus 176 l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 176 LENTKGFNLRALKYLVM 192 (249)
T ss_dssp HHHSTTCCCTTCCEEEE
T ss_pred HHcCCCcCccccCEEEE
Confidence 21 3466777887773
No 101
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=82.26 E-value=2.5 Score=37.32 Aligned_cols=60 Identities=15% Similarity=0.039 Sum_probs=48.3
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI 193 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 193 (269)
.+.+||.++++.-+.. ..+.+.+. +..+..+||+.+..++..++..+..|..+++++|.-
T Consensus 65 ~g~~lvi~P~~aL~~q----------~~~~l~~~---gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe 124 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKD----------QVDQLQAN---GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPE 124 (523)
T ss_dssp SSEEEEECSCHHHHHH----------HHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHH
T ss_pred CCCEEEECChHHHHHH----------HHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 4689999999875333 55556654 678999999999999999999999999999999863
No 102
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=82.12 E-value=0.51 Score=42.06 Aligned_cols=31 Identities=16% Similarity=0.068 Sum_probs=21.9
Q ss_pred CchhhHHHHhCceec-CcccEEEEeccccccC
Q 024287 1 MGSLCQLIEKHIFKL-ESVQVLVIDEVDFLFN 31 (269)
Q Consensus 1 pgrl~~~l~~~~~~l-~~~~~lViDE~~~l~~ 31 (269)
+++|++...++.+.+ ....++||||||.+.+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 355666554444444 4778999999999987
No 103
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=81.67 E-value=4 Score=31.23 Aligned_cols=75 Identities=9% Similarity=0.042 Sum_probs=44.9
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc-----c
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI-----A 194 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~ 194 (269)
.+.+++|.++++.-+.. +.+.+.+....+..+..++|+.+...+.. .+. ....|+|+|.- +
T Consensus 93 ~~~~~lil~Pt~~L~~q----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~Tp~~l~~~~ 158 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALH----------VEAECSKYSYKGLKSICIYGGRNRNGQIE---DIS-KGVDIIIATPGRLNDLQ 158 (228)
T ss_dssp CCCSEEEECSSHHHHHH----------HHHHHHHHCCTTCCEEEECC------CHH---HHH-SCCSEEEECHHHHHHHH
T ss_pred CCCcEEEEeCCHHHHHH----------HHHHHHHhcccCceEEEEECCCChHHHHH---Hhc-CCCCEEEECHHHHHHHH
Confidence 45689999999886544 45555554444678888998877554432 223 34789999962 1
Q ss_pred -cccCCCCCCCeEEE
Q 024287 195 -ARGIDLPETTHIYN 208 (269)
Q Consensus 195 -~~Gidi~~~~~Vi~ 208 (269)
....++..+++||.
T Consensus 159 ~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 159 MNNSVNLRSITYLVI 173 (228)
T ss_dssp HTTCCCCTTCCEEEE
T ss_pred HcCCcCcccceEEEE
Confidence 23456777887763
No 104
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=81.21 E-value=2.7 Score=37.75 Aligned_cols=60 Identities=10% Similarity=-0.042 Sum_probs=47.9
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHH--hcCCccEEEEecc
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEV--RQGGGYLLVSTDI 193 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f--~~~~~~iLv~T~~ 193 (269)
++.+||.++++.-+.. ..+.+.+. +..+..++|+++..++..++..+ ..+..+++++|.-
T Consensus 84 ~g~~lVisP~~~L~~q----------~~~~l~~~---gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 84 DGFTLVICPLISLMED----------QLMVLKQL---GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp SSEEEEECSCHHHHHH----------HHHHHHHH---TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred CCcEEEEeCHHHHHHH----------HHHHHHhc---CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 4789999999876433 55556655 67899999999999998888888 4678899999983
No 105
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=80.92 E-value=4.1 Score=31.32 Aligned_cols=73 Identities=4% Similarity=-0.044 Sum_probs=47.3
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC--CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc---
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK--GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA--- 194 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~--- 194 (269)
.+.+++|.++++.-+.. ..+.+.+... .+..+..++|+.+..++...+ ....|+|+|.--
T Consensus 91 ~~~~~lil~Pt~~L~~q----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~ 155 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQ----------IHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQ 155 (230)
T ss_dssp CSCCEEEECSSHHHHHH----------HHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHH
T ss_pred CCceEEEEeCCHHHHHH----------HHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHH
Confidence 45689999999886554 4444444322 257788999998876654332 247899999842
Q ss_pred ---cccCCCCCCCeEE
Q 024287 195 ---ARGIDLPETTHIY 207 (269)
Q Consensus 195 ---~~Gidi~~~~~Vi 207 (269)
...+++..++++|
T Consensus 156 ~~~~~~~~~~~~~~lV 171 (230)
T 2oxc_A 156 LIELDYLNPGSIRLFI 171 (230)
T ss_dssp HHHTTSSCGGGCCEEE
T ss_pred HHhcCCcccccCCEEE
Confidence 1235566677666
No 106
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=80.59 E-value=4.2 Score=31.45 Aligned_cols=76 Identities=5% Similarity=0.008 Sum_probs=40.7
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEec-----c
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD-----I 193 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~-----~ 193 (269)
.+.+++|.++++.-+.. +.+.+.+... .+..+...+|+.+... ..+.+..+...|+|+|. .
T Consensus 97 ~~~~~lil~Pt~~L~~q----------~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~ 163 (237)
T 3bor_A 97 KETQALVLAPTRELAQQ----------IQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDM 163 (237)
T ss_dssp CSCCEEEECSSHHHHHH----------HHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHH
T ss_pred CCceEEEEECcHHHHHH----------HHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHH
Confidence 35689999999886544 4444443322 1456777788765433 23445566688999994 2
Q ss_pred ccc-cCCCCCCCeEEE
Q 024287 194 AAR-GIDLPETTHIYN 208 (269)
Q Consensus 194 ~~~-Gidi~~~~~Vi~ 208 (269)
+.. .+++..+++||.
T Consensus 164 l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 164 LNRRYLSPKWIKMFVL 179 (237)
T ss_dssp HHTTSSCSTTCCEEEE
T ss_pred HHhCCcCcccCcEEEE
Confidence 333 356667777763
No 107
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=80.49 E-value=5.3 Score=30.28 Aligned_cols=75 Identities=9% Similarity=0.092 Sum_probs=48.8
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC--CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc----
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK--GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA---- 194 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~---- 194 (269)
+.+++|.++++.-+.. ..+.+.+... .+..+..++|+.+...+.. .+..+...|+|+|.--
T Consensus 82 ~~~~lil~Pt~~L~~q----------~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~ 148 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQ----------ISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILAL 148 (220)
T ss_dssp CCCEEEECSCHHHHHH----------HHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHH
T ss_pred CEEEEEEeCCHHHHHH----------HHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHH
Confidence 3489999999886544 3333333322 2578899999988766543 3445667899999631
Q ss_pred --cccCCCCCCCeEEE
Q 024287 195 --ARGIDLPETTHIYN 208 (269)
Q Consensus 195 --~~Gidi~~~~~Vi~ 208 (269)
...+++..++++|.
T Consensus 149 ~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 149 ARNKSLNLKHIKHFIL 164 (220)
T ss_dssp HHTTSSCCTTCCEEEE
T ss_pred HHhCCCCcccCCEEEE
Confidence 23356777777773
No 108
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=79.75 E-value=9.1 Score=28.49 Aligned_cols=74 Identities=9% Similarity=0.084 Sum_probs=46.1
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC--CCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc-----
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK--GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI----- 193 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~----- 193 (269)
+.+++|.++++.-+.. ..+.+.+... .+..+..++|+.+..+... .+ .+...|+|+|.-
T Consensus 71 ~~~~lil~Pt~~L~~q----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~ 136 (206)
T 1vec_A 71 NIQAMVIVPTRELALQ----------VSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDL 136 (206)
T ss_dssp SCCEEEECSCHHHHHH----------HHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHH
T ss_pred CeeEEEEeCcHHHHHH----------HHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHH
Confidence 4589999999886444 3444433322 2467888999987654422 22 346789999973
Q ss_pred ccc-cCCCCCCCeEEE
Q 024287 194 AAR-GIDLPETTHIYN 208 (269)
Q Consensus 194 ~~~-Gidi~~~~~Vi~ 208 (269)
+.. ..++..++++|.
T Consensus 137 ~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 137 IKKGVAKVDHVQMIVL 152 (206)
T ss_dssp HHTTCSCCTTCCEEEE
T ss_pred HHcCCcCcccCCEEEE
Confidence 222 345667777663
No 109
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=79.66 E-value=8.1 Score=28.76 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=47.6
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc-----c
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI-----A 194 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~ 194 (269)
.+.+++|.++++.-+.. ..+.+.+.... ..+..++|+.+.......+. ....|+|+|.- +
T Consensus 71 ~~~~~lil~P~~~L~~q----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~ 135 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQ----------VASELTAVAPH-LKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYL 135 (207)
T ss_dssp CCCSEEEECSSHHHHHH----------HHHHHHHHCTT-SCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHH----------HHHHHHHHhhc-ceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHH
Confidence 35689999999876443 55555555433 67888999887655433322 24679999962 2
Q ss_pred c-ccCCCCCCCeEEE
Q 024287 195 A-RGIDLPETTHIYN 208 (269)
Q Consensus 195 ~-~Gidi~~~~~Vi~ 208 (269)
. ..+++...++||.
T Consensus 136 ~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 136 RQGVLDLSRVEVAVL 150 (207)
T ss_dssp HHTSSCCTTCSEEEE
T ss_pred HcCCcchhhceEEEE
Confidence 2 2356677777773
No 110
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=79.12 E-value=6.2 Score=30.51 Aligned_cols=75 Identities=8% Similarity=0.034 Sum_probs=48.1
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc-----c
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI-----A 194 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~ 194 (269)
.+.+++|.++++.-+..+ ...+.++.... +..+..++|+.+.......+. . ...|+|+|.- +
T Consensus 101 ~~~~~lil~Pt~~L~~Q~------~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l 167 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQV------QQVAAEYCRAC---RLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFL 167 (242)
T ss_dssp CCCSEEEECSSHHHHHHH------HHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHH------HHHHHHHHhhc---CceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHH
Confidence 356799999999876553 12222222222 578889999998776544433 2 4679999962 2
Q ss_pred c-ccCCCCCCCeEE
Q 024287 195 A-RGIDLPETTHIY 207 (269)
Q Consensus 195 ~-~Gidi~~~~~Vi 207 (269)
. ...++..++++|
T Consensus 168 ~~~~~~~~~~~~lV 181 (242)
T 3fe2_A 168 ECGKTNLRRTTYLV 181 (242)
T ss_dssp HHTSCCCTTCCEEE
T ss_pred HcCCCCcccccEEE
Confidence 2 235677888777
No 111
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=75.39 E-value=2.6 Score=38.00 Aligned_cols=37 Identities=19% Similarity=0.530 Sum_probs=28.5
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
.++++||||++ |++ ...+..++..++ ...|+++++-.
T Consensus 262 ~~d~lIIDEAs-ml~----~~~~~~Ll~~l~--~~~~liLvGD~ 298 (608)
T 1w36_D 262 HLDVLVVDEAS-MID----LPMMSRLIDALP--DHARVIFLGDR 298 (608)
T ss_dssp SCSEEEECSGG-GCB----HHHHHHHHHTCC--TTCEEEEEECT
T ss_pred CCCEEEEechh-hCC----HHHHHHHHHhCC--CCCEEEEEcch
Confidence 78899999999 554 356677777765 67899998754
No 112
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=74.22 E-value=3 Score=31.68 Aligned_cols=42 Identities=7% Similarity=0.167 Sum_probs=24.3
Q ss_pred ccEEEEeccccccCCc---hhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 18 VQVLVIDEVDFLFNSS---KQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 18 ~~~lViDE~~~l~~~~---~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
-.++||||||.++... .....+...+...+ ....++++++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r-~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR-HQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT-TTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcC-cCCeEEEEECCC
Confidence 5689999999875321 11123333333322 346688888865
No 113
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=73.57 E-value=5.2 Score=38.65 Aligned_cols=76 Identities=5% Similarity=0.027 Sum_probs=51.6
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCC----ceEEecccCChhHHHHHHHHHhcCCccEEEEeccc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSS----DVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA 194 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~----~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~ 194 (269)
.+.+++|.++++.-|.. +.+.+.+... .+. .+..+||+.+..++....+.+++ ..|+|+|+-.
T Consensus 98 ~~~~~lil~PtreLa~Q----------~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~ 165 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQ----------AAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQF 165 (1054)
T ss_dssp TSCCEEEEESCHHHHHH----------HHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHH
T ss_pred cCCeEEEEeccHHHHHH----------HHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHH
Confidence 45789999999987655 3333433322 134 78999999999888777777776 8899999732
Q ss_pred -cccCC-CCCCCeEE
Q 024287 195 -ARGID-LPETTHIY 207 (269)
Q Consensus 195 -~~Gid-i~~~~~Vi 207 (269)
..-+. +..+++||
T Consensus 166 L~~~l~~L~~l~~lV 180 (1054)
T 1gku_B 166 LSKHYRELGHFDFIF 180 (1054)
T ss_dssp HHHCSTTSCCCSEEE
T ss_pred HHHHHHHhccCCEEE
Confidence 11111 45666666
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=73.33 E-value=2.4 Score=30.38 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=26.1
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCC
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIP 62 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~ 62 (269)
+.+.+++|+||++.+ +... ...+..+++.+.. .+..++++++..+
T Consensus 81 ~~~~~lLilDE~~~~-~~~~-~~~l~~li~~~~~-~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEKL-GNEE-QALLFSIFNRFRN-SGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTCC-CSHH-HHHHHHHHHHHHH-HTCCEEEEEESSC
T ss_pred HhCCCEEEEeCcccc-ChHH-HHHHHHHHHHHHH-cCCcEEEEECCCC
Confidence 346789999999964 3332 4566666665541 2234345555543
No 115
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=73.00 E-value=5.2 Score=30.36 Aligned_cols=73 Identities=10% Similarity=0.039 Sum_probs=40.1
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc----
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA---- 194 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~---- 194 (269)
.+.+++|.++++.-+.. ..+.+.+... .+..+..++|+.+..++... +. ...|+|+|.--
T Consensus 81 ~~~~~lil~Pt~~L~~q----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~ 145 (224)
T 1qde_A 81 KAPQALMLAPTRELALQ----------IQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDN 145 (224)
T ss_dssp CSCCEEEECSSHHHHHH----------HHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHH
T ss_pred CCceEEEEECCHHHHHH----------HHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHH
Confidence 45689999999886444 3444433322 25678889998775544322 22 37899999632
Q ss_pred --cccCCCCCCCeEE
Q 024287 195 --ARGIDLPETTHIY 207 (269)
Q Consensus 195 --~~Gidi~~~~~Vi 207 (269)
....++..+++||
T Consensus 146 ~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 146 IQRRRFRTDKIKMFI 160 (224)
T ss_dssp HHTTSSCCTTCCEEE
T ss_pred HHhCCcchhhCcEEE
Confidence 2345566777776
No 116
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=72.36 E-value=14 Score=28.91 Aligned_cols=75 Identities=12% Similarity=0.060 Sum_probs=47.6
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEec-----c
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD-----I 193 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~-----~ 193 (269)
.+.+++|.++++.-|.. ..+.+.+... .+..+..++|+.+...... .+..+ ..|+|+|. .
T Consensus 125 ~~~~~lil~Pt~~La~q----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~Iiv~Tp~~l~~~ 190 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQ----------TFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG-INIIVATPGRLLDH 190 (262)
T ss_dssp GCCCEEEECSSHHHHHH----------HHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC-CSEEEECHHHHHHH
T ss_pred CCceEEEEeCCHHHHHH----------HHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC-CCEEEEcHHHHHHH
Confidence 35689999999987555 4444444332 2456788888887655432 33334 78999994 2
Q ss_pred cc--ccCCCCCCCeEEE
Q 024287 194 AA--RGIDLPETTHIYN 208 (269)
Q Consensus 194 ~~--~Gidi~~~~~Vi~ 208 (269)
+. .++++..+.+||.
T Consensus 191 ~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 191 MQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp HHHCTTCCCTTCCEEEE
T ss_pred HHccCCcccccCCEEEE
Confidence 22 2466777887763
No 117
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=71.95 E-value=3.5 Score=30.25 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=27.0
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
+.+.+++|+||++....+......+..++.... ..+..+++.|...+.
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~-~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRY-NNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH-HTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH-HcCCCEEEEcCCChh
Confidence 446789999999853333334456666665543 134445554444343
No 118
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=70.27 E-value=1.3 Score=39.30 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=13.6
Q ss_pred cCcccEEEEecccccc
Q 024287 15 LESVQVLVIDEVDFLF 30 (269)
Q Consensus 15 l~~~~~lViDE~~~l~ 30 (269)
+....++||||||.+.
T Consensus 173 ~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 173 KLEDYLIVIDEAHNLL 188 (540)
T ss_dssp CGGGEEEEETTGGGGG
T ss_pred CcCCCEEEEEccccHH
Confidence 4678899999999983
No 119
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=68.94 E-value=4.5 Score=32.94 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=24.7
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCC
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIP 62 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~ 62 (269)
+..++++||+|.+.........+..++.... ..+.+++ ++++-+
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~-~~~~~ii-i~~~~~ 141 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQII-LASDRH 141 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEE-EEESSC
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHH-HCCCeEE-EEecCC
Confidence 4679999999987653222344555554432 1334544 455544
No 120
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=67.20 E-value=17 Score=29.96 Aligned_cols=74 Identities=9% Similarity=0.107 Sum_probs=48.1
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC--CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc----
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK--GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA---- 194 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~---- 194 (269)
+.+++|.++++.-+.. ..+.+.+... .+..+..++|+.+...... .+..+...|+|+|.-.
T Consensus 76 ~~~~lil~P~~~L~~q----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~ 142 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQ----------ISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILAL 142 (391)
T ss_dssp CCCEEEECSCHHHHHH----------HHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHH
T ss_pred CeeEEEECCCHHHHHH----------HHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHH
Confidence 4589999999876444 3333433322 2578899999988766543 3445677899999632
Q ss_pred --cccCCCCCCCeEE
Q 024287 195 --ARGIDLPETTHIY 207 (269)
Q Consensus 195 --~~Gidi~~~~~Vi 207 (269)
....++..+++||
T Consensus 143 ~~~~~~~~~~~~~vV 157 (391)
T 1xti_A 143 ARNKSLNLKHIKHFI 157 (391)
T ss_dssp HHTTSSCCTTCSEEE
T ss_pred HHcCCccccccCEEE
Confidence 2235567777766
No 121
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=66.44 E-value=19 Score=30.42 Aligned_cols=73 Identities=11% Similarity=0.127 Sum_probs=47.8
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEecccc---
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAA--- 195 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~--- 195 (269)
.+.++||.|+++.-+.. ..+.+.+.+. ....+..+||+....++..... ...|+|+|.-.-
T Consensus 51 ~~~~~liv~P~~~L~~q----------~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~ 115 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQ----------HAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIEND 115 (494)
T ss_dssp SCSCEEEECSSHHHHHH----------HHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHH
T ss_pred CCCeEEEEECCHHHHHH----------HHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHH
Confidence 56899999999775333 4555555542 2347899999998877654433 357899986422
Q ss_pred ---ccCCCCCCCeEE
Q 024287 196 ---RGIDLPETTHIY 207 (269)
Q Consensus 196 ---~Gidi~~~~~Vi 207 (269)
..+.....++||
T Consensus 116 ~~~~~~~~~~~~~vI 130 (494)
T 1wp9_A 116 LLAGRISLEDVSLIV 130 (494)
T ss_dssp HHTTSCCTTSCSEEE
T ss_pred HhcCCcchhhceEEE
Confidence 134566667766
No 122
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=65.61 E-value=12 Score=28.68 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=44.6
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc-----
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI----- 193 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~----- 193 (269)
.+.+++|.++++.-+.. ..+.+.+... .+..+..++|+.+.......+ +...|+|+|.-
T Consensus 96 ~~~~~lil~Pt~~L~~q----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~ 160 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQ----------TFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQH 160 (236)
T ss_dssp GCCCEEEECSSHHHHHH----------HHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHH
T ss_pred CCceEEEEeCCHHHHHH----------HHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHH
Confidence 35689999999886554 3444444332 246788899988765543322 35789999963
Q ss_pred ccc--cCCCCCCCeEE
Q 024287 194 AAR--GIDLPETTHIY 207 (269)
Q Consensus 194 ~~~--Gidi~~~~~Vi 207 (269)
+.. ..++..++++|
T Consensus 161 l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 161 MDETVSFHATDLQMLV 176 (236)
T ss_dssp HHHCSSCCCTTCCEEE
T ss_pred HHhcCCcccccccEEE
Confidence 122 35566777766
No 123
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=65.42 E-value=11 Score=32.80 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=44.8
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc-----
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA----- 194 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~----- 194 (269)
++++||.++++.-+.. ..+.+.+.+. .+..+..++|+.+...+...+. +...|+|+|.-.
T Consensus 52 ~~~~lil~P~~~L~~q----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~ 117 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQ----------QATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNL 117 (555)
T ss_dssp CCCEEEECSSHHHHHH----------HHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHH----------HHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHH
Confidence 6789999999876544 3333333322 1578999999997665432221 136799998742
Q ss_pred ccc-C-CCCCCCeEE
Q 024287 195 ARG-I-DLPETTHIY 207 (269)
Q Consensus 195 ~~G-i-di~~~~~Vi 207 (269)
..+ + .+..+++||
T Consensus 118 ~~~~~~~~~~~~~vV 132 (555)
T 3tbk_A 118 NNGAIPSLSVFTLMI 132 (555)
T ss_dssp HTSSSCCGGGCSEEE
T ss_pred hcCcccccccCCEEE
Confidence 222 2 455667766
No 124
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=64.31 E-value=7.5 Score=33.40 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=26.1
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
+.+++++||+|.+.........+...+..+. ..+.++++.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECC
Confidence 6789999999987754223345555555443 244566555433
No 125
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=63.66 E-value=7.6 Score=29.54 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=19.3
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhh
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASY 46 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~ 46 (269)
..-.++|+||+|.+.........+..++...
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~ 133 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRV 133 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHH
Confidence 4457999999997654332234455555544
No 126
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=63.28 E-value=15 Score=30.34 Aligned_cols=73 Identities=10% Similarity=0.020 Sum_probs=45.8
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc----
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA---- 194 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~---- 194 (269)
.+.+++|.++++.-+.. ..+.+.+... .+..+..++|+.+..+....+. ...|+|+|.-.
T Consensus 88 ~~~~~lil~P~~~L~~q----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~ 152 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQ----------IQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDN 152 (394)
T ss_dssp CSCCEEEECSSHHHHHH----------HHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHH
T ss_pred CCCCEEEEcCCHHHHHH----------HHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHH
Confidence 45689999999876444 3344433322 2567889999988766544433 35799998532
Q ss_pred -c-ccCCCCCCCeEE
Q 024287 195 -A-RGIDLPETTHIY 207 (269)
Q Consensus 195 -~-~Gidi~~~~~Vi 207 (269)
. ....+...++||
T Consensus 153 ~~~~~~~~~~~~~vI 167 (394)
T 1fuu_A 153 IQRRRFRTDKIKMFI 167 (394)
T ss_dssp HHTTSSCCTTCCEEE
T ss_pred HHhCCcchhhCcEEE
Confidence 1 234455666666
No 127
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=62.92 E-value=17 Score=28.14 Aligned_cols=74 Identities=16% Similarity=0.022 Sum_probs=45.7
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc-----
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA----- 194 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~----- 194 (269)
+.++||.++++.-+.. ..+.+.+... .+..+..++|+.+....... + .....|+|+|.--
T Consensus 100 ~~~~lil~Pt~~L~~q----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l 165 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQ----------ILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFI 165 (253)
T ss_dssp CCSEEEECSSHHHHHH----------HHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHH
T ss_pred CceEEEEECCHHHHHH----------HHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHH
Confidence 3589999999886555 3333333221 24667888998876554322 2 2457899999742
Q ss_pred -cccCCCCCCCeEEE
Q 024287 195 -ARGIDLPETTHIYN 208 (269)
Q Consensus 195 -~~Gidi~~~~~Vi~ 208 (269)
...+++..++++|.
T Consensus 166 ~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 166 EKNKISLEFCKYIVL 180 (253)
T ss_dssp HTTSBCCTTCCEEEE
T ss_pred HcCCCChhhCCEEEE
Confidence 12356777777763
No 128
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=61.96 E-value=11 Score=30.40 Aligned_cols=71 Identities=6% Similarity=-0.082 Sum_probs=44.0
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC--CCCceEEecccCChhHHHHHHHHHhcCCccEEEEecccc---
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK--GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAA--- 195 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~--- 195 (269)
+.++||.++++.-|.. +.+.+..... .+..+...+|+.+..... .....|+|+|.---
T Consensus 162 ~~~~lil~PtreLa~Q----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~ 224 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQ----------TGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDW 224 (300)
T ss_dssp SCCEEEECSSHHHHHH----------HHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHH
T ss_pred CceEEEEcCcHHHHHH----------HHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHH
Confidence 4579999999987555 3333333221 246677777776543321 34567999997421
Q ss_pred ----ccCCCCCCCeEEE
Q 024287 196 ----RGIDLPETTHIYN 208 (269)
Q Consensus 196 ----~Gidi~~~~~Vi~ 208 (269)
..+++..+.++|.
T Consensus 225 l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 225 CSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp HTTTCCCCGGGCSEEEE
T ss_pred HHhcCCCChhhceEEEE
Confidence 3467778888773
No 129
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=61.15 E-value=12 Score=27.76 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=20.9
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
..++|++||+|.+ +.+ ....+..+.. .+..+++.+-+
T Consensus 76 ~~dvviIDE~Q~~-~~~-~~~~l~~l~~-----~~~~Vi~~Gl~ 112 (184)
T 2orw_A 76 DTRGVFIDEVQFF-NPS-LFEVVKDLLD-----RGIDVFCAGLD 112 (184)
T ss_dssp TEEEEEECCGGGS-CTT-HHHHHHHHHH-----TTCEEEEEEES
T ss_pred CCCEEEEECcccC-CHH-HHHHHHHHHH-----CCCCEEEEeec
Confidence 5679999999964 222 2233333332 35566655443
No 130
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=61.07 E-value=5.7 Score=30.09 Aligned_cols=52 Identities=10% Similarity=0.193 Sum_probs=27.7
Q ss_pred CcccEEEEeccccccCCc-hhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHH
Q 024287 16 ESVQVLVIDEVDFLFNSS-KQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLH 69 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~-~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~ 69 (269)
..+++||+||+-..+..+ -..+.+.+++...+ ...-+|+.+--.|+.+-.++
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp--~~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARP--GHQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC--TTCEEEEECSSCCHHHHHHC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc--CCCEEEEECCCCcHHHHHhC
Confidence 567899999997544444 11234444444322 34445555544555544443
No 131
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=60.91 E-value=16 Score=31.90 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=42.1
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc-----
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA----- 194 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~----- 194 (269)
+.++||.++++.-+.. ..+.+.+.+. .++.+..+||+.+...+...+. ....|+|+|.-.
T Consensus 55 ~~~~lil~P~~~L~~q----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~ 120 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQ----------QKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSF 120 (556)
T ss_dssp CCCEEEECSSHHHHHH----------HHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHH----------HHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHH
Confidence 6789999999876544 3333333322 1578999999987655432221 136799998742
Q ss_pred ccc-C-CCCCCCeEEE
Q 024287 195 ARG-I-DLPETTHIYN 208 (269)
Q Consensus 195 ~~G-i-di~~~~~Vi~ 208 (269)
..+ + .+..+++||.
T Consensus 121 ~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 121 EDGTLTSLSIFTLMIF 136 (556)
T ss_dssp HSSSCCCSTTCSEEEE
T ss_pred HhCcccccccCCEEEE
Confidence 222 3 5667777663
No 132
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=60.72 E-value=3.9 Score=37.26 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=45.0
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHH-HHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccccc---
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLL-VDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAAR--- 196 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~--- 196 (269)
++++||.++++.-+.. . .+.+.+.+..++.+..+||+.+..++...+. +...|+|+|.-.-.
T Consensus 56 ~~~vlvl~P~~~L~~Q----------~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l 121 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQ----------LFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSL 121 (699)
T ss_dssp CCCBCCEESCSHHHHH----------HHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHT
T ss_pred CCeEEEEECCHHHHHH----------HHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHH
Confidence 3789999999875333 4 5556665554578999999988765443332 46789999874221
Q ss_pred ---------cCCCCCCCeEE
Q 024287 197 ---------GIDLPETTHIY 207 (269)
Q Consensus 197 ---------Gidi~~~~~Vi 207 (269)
.+.+..+++||
T Consensus 122 ~~~~~~~~~~~~~~~~~lvV 141 (699)
T 4gl2_A 122 LNLENGEDAGVQLSDFSLII 141 (699)
T ss_dssp C--------CCCGGGCSEEE
T ss_pred hccccccccceecccCcEEE
Confidence 24556677766
No 133
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=60.17 E-value=10 Score=28.64 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=21.7
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
.+++++|+|||++.+ . . ....+..+. ..+.|+++.+
T Consensus 89 ~~~~DvIlIDEaQFf-k-~-~ve~~~~L~-----~~gk~VI~~G 124 (195)
T 1w4r_A 89 ALGVAVIGIDEGQFF-P-D-IVEFCEAMA-----NAGKTVIVAA 124 (195)
T ss_dssp HHTCSEEEESSGGGC-T-T-HHHHHHHHH-----HTTCEEEEEE
T ss_pred ccCCCEEEEEchhhh-H-H-HHHHHHHHH-----HCCCeEEEEe
Confidence 356889999999965 2 2 333333333 2456766643
No 134
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=59.99 E-value=21 Score=33.12 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=41.8
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc-----
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA----- 194 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~----- 194 (269)
++++||.++++.-+.. ..+.+.+.+. .++.+..+||+.+...+...+. +...|+|+|.-.
T Consensus 296 ~~~~Lvl~Pt~~L~~Q----------~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l 361 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQ----------QKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSF 361 (797)
T ss_dssp CCCEEEECSSHHHHHH----------HHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHH----------HHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHH
Confidence 6789999999876444 3333433332 1578999999987665432221 246799999632
Q ss_pred ccc-C-CCCCCCeEE
Q 024287 195 ARG-I-DLPETTHIY 207 (269)
Q Consensus 195 ~~G-i-di~~~~~Vi 207 (269)
..+ + .+..+++||
T Consensus 362 ~~~~~~~~~~~~~iV 376 (797)
T 4a2q_A 362 EDGTLTSLSIFTLMI 376 (797)
T ss_dssp HSSSCCCGGGCSEEE
T ss_pred HhccccccccCCEEE
Confidence 222 2 455667766
No 135
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=59.98 E-value=36 Score=28.14 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=46.3
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc-----
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI----- 193 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~----- 193 (269)
.+.+++|.++++.-+.. ..+.+.+... .+..+..++|+......... ..+...|+|+|.-
T Consensus 88 ~~~~~lil~P~~~L~~q----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~ 153 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQ----------TSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDL 153 (400)
T ss_dssp CSCCEEEECSSHHHHHH----------HHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHH
T ss_pred CCccEEEEcCCHHHHHH----------HHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHH
Confidence 34689999999886444 3444444332 15678888898875543221 2356789999953
Q ss_pred cc-ccCCCCCCCeEEE
Q 024287 194 AA-RGIDLPETTHIYN 208 (269)
Q Consensus 194 ~~-~Gidi~~~~~Vi~ 208 (269)
+. ...++...++||.
T Consensus 154 ~~~~~~~~~~~~~vIi 169 (400)
T 1s2m_A 154 ASRKVADLSDCSLFIM 169 (400)
T ss_dssp HHTTCSCCTTCCEEEE
T ss_pred HHhCCcccccCCEEEE
Confidence 22 2355677777663
No 136
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.79 E-value=8.5 Score=31.55 Aligned_cols=42 Identities=17% Similarity=0.407 Sum_probs=26.1
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccC
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASI 61 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl 61 (269)
.+.+++|+||+|. ++.. ....+.+.++..+ .+..+++.|...
T Consensus 133 ~~~~vlilDE~~~-L~~~-~~~~L~~~le~~~--~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKD-AQAALRRTMEKYS--KNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHH-HHHHHHHHHHHST--TTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHH-HHHHHHHHHHhhc--CCCEEEEEeCCH
Confidence 4667999999997 4443 3356666666643 445555555443
No 137
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=58.61 E-value=10 Score=31.82 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=25.3
Q ss_pred cccEEEEeccccccCC--chhhhHHHHHHhhhccCCCccEEEEec
Q 024287 17 SVQVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNRQTVFASA 59 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~--~~~~~~i~~i~~~~~~~~~~q~i~~SA 59 (269)
.-.++|+||||.++.. ......+..+++..+ ..+.-+++.|-
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~R-k~g~~~~~~tQ 305 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIR-KYNGSLIVISQ 305 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGG-GGTCEEEEEES
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhh-hhCeEEEEEcC
Confidence 3568999999998863 334455666666654 23344444443
No 138
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=58.14 E-value=12 Score=30.03 Aligned_cols=39 Identities=21% Similarity=0.438 Sum_probs=23.0
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
..-.++|+||+|.+... ....+...++..+ .+..+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~--~~~~L~~~le~~~--~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD--AQQALRRTMEMFS--SNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH--HHHHHHHHHHHTT--TTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH--HHHHHHHHHHhcC--CCCeEEEEe
Confidence 56779999999976432 2345555555432 344444443
No 139
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=58.08 E-value=31 Score=32.35 Aligned_cols=61 Identities=8% Similarity=-0.111 Sum_probs=40.7
Q ss_pred hcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc
Q 024287 118 SDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI 193 (269)
Q Consensus 118 ~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 193 (269)
...+.+++|.++|+.-|...+ ..+.. +.+. -++.+.++.|+++...|.... ...|+|+|+-
T Consensus 112 ~l~g~~vlVltPTreLA~Q~~------e~~~~-l~~~--lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 112 ALTGKGVHVVTVNDYLAQRDA------ENNRP-LFEF--LGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp HTTSSCCEEEESSHHHHHHHH------HHHHH-HHHH--TTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred HHcCCcEEEEcCCHHHHHHHH------HHHHH-HHHh--cCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 345678999999999776632 22222 2222 167899999999976554332 2679999973
No 140
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=57.67 E-value=32 Score=27.82 Aligned_cols=73 Identities=10% Similarity=0.078 Sum_probs=45.4
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc----
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA---- 194 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~---- 194 (269)
.+.+++|.++++.-+.. ..+.+.+... .+..+..++|+.......... . ...|+|+|.-.
T Consensus 73 ~~~~~lil~P~~~L~~q----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~--~~~iiv~T~~~l~~~ 137 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQ----------VADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---K--NANIVVGTPGRILDH 137 (367)
T ss_dssp SSCCEEEECSCHHHHHH----------HHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH---H--TCSEEEECHHHHHHH
T ss_pred CCCcEEEEcCCHHHHHH----------HHHHHHHHhCCCCceEEEEECCcchHHHHhhc---C--CCCEEEecHHHHHHH
Confidence 46789999999876444 4444444332 246788888888765543332 2 46799998632
Q ss_pred -c-ccCCCCCCCeEE
Q 024287 195 -A-RGIDLPETTHIY 207 (269)
Q Consensus 195 -~-~Gidi~~~~~Vi 207 (269)
. ...++...++||
T Consensus 138 ~~~~~~~~~~~~~iI 152 (367)
T 1hv8_A 138 INRGTLNLKNVKYFI 152 (367)
T ss_dssp HHTTCSCTTSCCEEE
T ss_pred HHcCCcccccCCEEE
Confidence 1 124566677666
No 141
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=57.57 E-value=14 Score=28.49 Aligned_cols=35 Identities=40% Similarity=0.612 Sum_probs=21.4
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEE
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFA 57 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~ 57 (269)
.++++|+|||++. ++.+ ....+..+.. .+.+++..
T Consensus 100 ~~~dvV~IDEaQF-f~~~-~v~~l~~la~-----~gi~Vi~~ 134 (219)
T 3e2i_A 100 TNVDVIGIDEVQF-FDDE-IVSIVEKLSA-----DGHRVIVA 134 (219)
T ss_dssp TTCSEEEECCGGG-SCTH-HHHHHHHHHH-----TTCEEEEE
T ss_pred cCCCEEEEechhc-CCHH-HHHHHHHHHH-----CCCEEEEe
Confidence 5678999999994 4443 3445555442 34555554
No 142
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=57.49 E-value=35 Score=31.98 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=41.1
Q ss_pred hhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec
Q 024287 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD 192 (269)
Q Consensus 117 ~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~ 192 (269)
....+.+++|.++|+.-|...+ ..... +.+. -++.+.++.|+++..+|.... ...|+++|+
T Consensus 120 ~aL~g~~vlVltptreLA~qd~------e~~~~-l~~~--lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDA------EQMGK-IFEF--LGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHH------HHHHH-HHHH--TTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred HHHcCCCEEEEeCCHHHHHHHH------HHHHH-HHhh--cCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 3445678999999999876632 22222 2222 268899999999987665432 257999997
No 143
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=56.04 E-value=16 Score=27.99 Aligned_cols=12 Identities=50% Similarity=0.905 Sum_probs=10.7
Q ss_pred cccEEEEecccc
Q 024287 17 SVQVLVIDEVDF 28 (269)
Q Consensus 17 ~~~~lViDE~~~ 28 (269)
.+++|+|||++.
T Consensus 101 ~~dvViIDEaQF 112 (214)
T 2j9r_A 101 EMDVIAIDEVQF 112 (214)
T ss_dssp SCCEEEECCGGG
T ss_pred CCCEEEEECccc
Confidence 488999999995
No 144
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=55.69 E-value=24 Score=30.00 Aligned_cols=73 Identities=10% Similarity=0.076 Sum_probs=46.5
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc-----c
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI-----A 194 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~ 194 (269)
+.++||.+++++-|.. +.+.+.+... .+..+..++|+.+...+... +. ....|+|+|.- +
T Consensus 129 ~~~~lil~PtreLa~Q----------~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Ivv~Tp~~l~~~l 194 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQ----------IFNEARKFAFESYLKIGIVYGGTSFRHQNEC---IT-RGCHVVIATPGRLLDFV 194 (434)
T ss_dssp CCSEEEECSSHHHHHH----------HHHHHHHHTTTSSCCCCEECTTSCHHHHHHH---HT-TCCSEEEECHHHHHHHH
T ss_pred CccEEEEecCHHHHHH----------HHHHHHHHhccCCcEEEEEECCCCHHHHHHH---hh-cCCCEEEEChHHHHHHH
Confidence 4589999999986555 3344433322 24678889999887654332 22 35789999963 2
Q ss_pred cc-cCCCCCCCeEE
Q 024287 195 AR-GIDLPETTHIY 207 (269)
Q Consensus 195 ~~-Gidi~~~~~Vi 207 (269)
.+ .+++..++++|
T Consensus 195 ~~~~~~l~~~~~lV 208 (434)
T 2db3_A 195 DRTFITFEDTRFVV 208 (434)
T ss_dssp HTTSCCCTTCCEEE
T ss_pred HhCCcccccCCeEE
Confidence 22 35567777776
No 145
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=54.89 E-value=14 Score=27.58 Aligned_cols=60 Identities=13% Similarity=0.098 Sum_probs=33.6
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI 193 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 193 (269)
+.+++|.|+++.-+... ..+.+.+....+..+..++|+.....+..... +...|+|+|.-
T Consensus 82 ~~~~lil~p~~~L~~q~---------~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 141 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQL---------FRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQ 141 (216)
T ss_dssp CCCEEEEESSHHHHHHH---------HHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHH
T ss_pred CCcEEEEECHHHHHHHH---------HHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHH
Confidence 57899999997753331 22333333333577888998876544322211 14678999864
No 146
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=54.83 E-value=12 Score=27.90 Aligned_cols=39 Identities=18% Similarity=0.417 Sum_probs=22.6
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
..-.++|+||+|.+... ....+..+++... .+..+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~--~~~~l~~~l~~~~--~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD--AQAALRRTMEMYS--KSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH--HHHHHHHHHHHTT--TTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH--HHHHHHHHHHhcC--CCCeEEEEe
Confidence 45679999999976432 2345555555432 344444444
No 147
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=54.78 E-value=49 Score=27.43 Aligned_cols=72 Identities=11% Similarity=0.077 Sum_probs=45.1
Q ss_pred CceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc-----cc
Q 024287 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI-----AA 195 (269)
Q Consensus 122 ~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~~ 195 (269)
.+++|.++++.-+.. +.+.+.+... .+..+..++|+.+..+... .+. ....|+|+|.- +.
T Consensus 102 ~~~lil~Pt~~L~~q----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~-~~~~I~v~Tp~~l~~~l~ 167 (417)
T 2i4i_A 102 PISLVLAPTRELAVQ----------IYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLE-RGCHLLVATPGRLVDMME 167 (417)
T ss_dssp CSEEEECSSHHHHHH----------HHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHT-TCCSEEEECHHHHHHHHH
T ss_pred ccEEEECCcHHHHHH----------HHHHHHHHhCcCCceEEEEECCCCHHHHHH---Hhh-CCCCEEEEChHHHHHHHH
Confidence 579999999886555 3333333221 2567888999987665432 222 34689999973 22
Q ss_pred c-cCCCCCCCeEE
Q 024287 196 R-GIDLPETTHIY 207 (269)
Q Consensus 196 ~-Gidi~~~~~Vi 207 (269)
. .+++..+++||
T Consensus 168 ~~~~~~~~~~~iV 180 (417)
T 2i4i_A 168 RGKIGLDFCKYLV 180 (417)
T ss_dssp TTSBCCTTCCEEE
T ss_pred cCCcChhhCcEEE
Confidence 2 24566777766
No 148
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=53.05 E-value=8.7 Score=29.07 Aligned_cols=73 Identities=7% Similarity=-0.062 Sum_probs=42.5
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCC-----CCceEEecccCChhHHHHHHHHHhcCCccEEEEecc--
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKG-----SSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI-- 193 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~-- 193 (269)
+.+++|.++++.-+.. ..+.+.+.... +..+..++|+.+..... +.+ .+...|+|+|.-
T Consensus 72 ~~~~lil~Pt~~L~~q----------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l 137 (219)
T 1q0u_A 72 EVQAVITAPTRELATQ----------IYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRI 137 (219)
T ss_dssp SCCEEEECSSHHHHHH----------HHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHH
T ss_pred CceEEEEcCcHHHHHH----------HHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHH
Confidence 4689999999886554 33333332221 45677888887543321 111 235679999962
Q ss_pred ---ccc-cCCCCCCCeEE
Q 024287 194 ---AAR-GIDLPETTHIY 207 (269)
Q Consensus 194 ---~~~-Gidi~~~~~Vi 207 (269)
+.. .+++..++++|
T Consensus 138 ~~~l~~~~~~~~~~~~lV 155 (219)
T 1q0u_A 138 NDFIREQALDVHTAHILV 155 (219)
T ss_dssp HHHHHTTCCCGGGCCEEE
T ss_pred HHHHHcCCCCcCcceEEE
Confidence 222 34566677766
No 149
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=52.39 E-value=14 Score=27.10 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=28.7
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEec
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASA 59 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SA 59 (269)
.-.++++||...-++.. ....+..++..+. ...|++++|-
T Consensus 86 ~~~~llLDEp~a~LD~~-~~~~~~~~l~~~~--~~~~~ivith 125 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDA-NVKRVADLIKESS--KESQFIVITL 125 (173)
T ss_dssp CCSEEEEESTTTTCCHH-HHHHHHHHHHHHT--TTSEEEEECS
T ss_pred CCCEEEECCCccCCCHH-HHHHHHHHHHHhc--cCCEEEEEEe
Confidence 34699999999877765 4566777776664 4567777763
No 150
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=52.25 E-value=48 Score=31.33 Aligned_cols=61 Identities=10% Similarity=0.011 Sum_probs=41.3
Q ss_pred hhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec
Q 024287 117 QSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD 192 (269)
Q Consensus 117 ~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~ 192 (269)
....+.+++|.++|+.-|...+ ..... +.+. -++.+.++.|+++..+|.... ...|+++|+
T Consensus 148 ~aL~g~~v~VvTpTreLA~Qda------e~m~~-l~~~--lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 148 NALAGNGVHIVTVNDYLAKRDS------EWMGR-VHRF--LGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp HHTTTSCEEEEESSHHHHHHHH------HHHHH-HHHH--TTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHhCCCeEEEeCCHHHHHHHH------HHHHH-HHhh--cCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 3445678999999999776632 22222 2222 268899999999987765443 257999997
No 151
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=51.92 E-value=16 Score=31.83 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=26.5
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
+.++++|+|||++| +.. ......++++. .+.|+|+.+.+
T Consensus 413 ~~~rlvvlDEA~km-D~~-~~~~~~~l~~~----lglQliiatP~ 451 (483)
T 3euj_A 413 LPCRLLFLDQAARL-DAM-SINTLFELCER----LDMQLLIAAPE 451 (483)
T ss_dssp CCCCEEEESSGGGS-CHH-HHHHHHHHHHH----TTCEEEEEESS
T ss_pred CceeEEEEeccccC-CHH-HHHHHHHHHHH----cCCEEEEECcc
Confidence 58999999999654 222 34555666655 57899976543
No 152
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=51.90 E-value=17 Score=27.12 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=26.2
Q ss_pred cCcccEEEEeccccccCCc-hhhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 15 LESVQVLVIDEVDFLFNSS-KQVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~-~~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
..+.+++|+||+..+-... ..+..+.+++.. ...+++-++|.+.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~-----~~~~ilgti~vsh 147 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST-----PGTIILGTIPVPK 147 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-----SSCCEEEECCCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC-----CCcEEEEEeecCC
Confidence 5667899999987662221 244555555542 2345555677643
No 153
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=50.15 E-value=19 Score=27.72 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=21.3
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEec
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASA 59 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SA 59 (269)
.+.++|||||++.+ ... ....+..+.. .+.++++.+-
T Consensus 88 ~~~dvViIDEaQ~l-~~~-~ve~l~~L~~-----~gi~Vil~Gl 124 (223)
T 2b8t_A 88 DETKVIGIDEVQFF-DDR-ICEVANILAE-----NGFVVIISGL 124 (223)
T ss_dssp TTCCEEEECSGGGS-CTH-HHHHHHHHHH-----TTCEEEEECC
T ss_pred CCCCEEEEecCccC-cHH-HHHHHHHHHh-----CCCeEEEEec
Confidence 35789999999953 322 2233333222 3567776654
No 154
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=48.77 E-value=46 Score=27.55 Aligned_cols=75 Identities=5% Similarity=-0.001 Sum_probs=45.3
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc-----
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI----- 193 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~----- 193 (269)
.+.+++|.++++.-+.. ..+.+.+... .+..+...+|+.+... ..+.+..+...|+|+|.-
T Consensus 107 ~~~~~lil~P~~~L~~q----------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~ 173 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQ----------IQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDM 173 (414)
T ss_dssp CSCCEEEECSSHHHHHH----------HHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHH
T ss_pred CceeEEEEeChHHHHHH----------HHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHH
Confidence 45789999999886544 3333333221 2456666777765433 344556677889999952
Q ss_pred ccc-cCCCCCCCeEE
Q 024287 194 AAR-GIDLPETTHIY 207 (269)
Q Consensus 194 ~~~-Gidi~~~~~Vi 207 (269)
+.. .++...+++||
T Consensus 174 l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 174 LNRRYLSPKYIKMFV 188 (414)
T ss_dssp HHHTSSCSTTCCEEE
T ss_pred HHcCCcccccCcEEE
Confidence 222 24555666665
No 155
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=48.61 E-value=16 Score=32.55 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=26.3
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
....+++||||++. ++ ...+..++..++ ...++++++-.
T Consensus 277 ~~~~dvlIIDEasm-l~----~~~~~~Ll~~~~--~~~~lilvGD~ 315 (574)
T 3e1s_A 277 PAPYDLLIVDEVSM-MG----DALMLSLLAAVP--PGARVLLVGDT 315 (574)
T ss_dssp CCSCSEEEECCGGG-CC----HHHHHHHHTTSC--TTCEEEEEECT
T ss_pred cccCCEEEEcCccC-CC----HHHHHHHHHhCc--CCCEEEEEecc
Confidence 34678999999994 33 245566666654 56777777544
No 156
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=48.57 E-value=22 Score=26.54 Aligned_cols=12 Identities=50% Similarity=0.891 Sum_probs=10.6
Q ss_pred cccEEEEecccc
Q 024287 17 SVQVLVIDEVDF 28 (269)
Q Consensus 17 ~~~~lViDE~~~ 28 (269)
+.++|+|||++.
T Consensus 81 ~~dvViIDEaqf 92 (191)
T 1xx6_A 81 DTEVIAIDEVQF 92 (191)
T ss_dssp TCSEEEECSGGG
T ss_pred cCCEEEEECCCC
Confidence 478999999995
No 157
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=47.35 E-value=20 Score=29.06 Aligned_cols=28 Identities=7% Similarity=0.223 Sum_probs=18.0
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhh
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLAS 45 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~ 45 (269)
...+++||||+|.|-... ...+.+.++.
T Consensus 81 ~~~kvviIdead~lt~~a--~naLLk~LEe 108 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA--ANAFLKALEE 108 (305)
T ss_dssp SSSEEEEETTGGGBCHHH--HHHTHHHHHS
T ss_pred CCceEEEeccHHHhCHHH--HHHHHHHHhC
Confidence 457899999999764322 2445555554
No 158
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=46.89 E-value=68 Score=26.50 Aligned_cols=74 Identities=9% Similarity=0.022 Sum_probs=45.0
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEec-----c
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD-----I 193 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~-----~ 193 (269)
.+.+++|.++++.-+.. ..+.+.+... .+..+..++|+.+..+....+ . ....|+|+|. .
T Consensus 104 ~~~~~lil~Pt~~L~~q----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~ivv~Tp~~l~~~ 169 (410)
T 2j0s_A 104 RETQALILAPTRELAVQ----------IQKGLLALGDYMNVQCHACIGGTNVGEDIRKL---D-YGQHVVAGTPGRVFDM 169 (410)
T ss_dssp CSCCEEEECSSHHHHHH----------HHHHHHHHTTTTTCCEEEECTTSCHHHHHHHH---H-HCCSEEEECHHHHHHH
T ss_pred CCceEEEEcCcHHHHHH----------HHHHHHHHhccCCeEEEEEECCCCHHHHHHHh---h-cCCCEEEcCHHHHHHH
Confidence 45789999999886544 3444433321 245678888988766544332 2 2357999985 2
Q ss_pred ccc-cCCCCCCCeEE
Q 024287 194 AAR-GIDLPETTHIY 207 (269)
Q Consensus 194 ~~~-Gidi~~~~~Vi 207 (269)
+.. .++...+++||
T Consensus 170 l~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 170 IRRRSLRTRAIKMLV 184 (410)
T ss_dssp HHTTSSCCTTCCEEE
T ss_pred HHhCCccHhheeEEE
Confidence 323 35556667666
No 159
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=46.87 E-value=19 Score=29.38 Aligned_cols=41 Identities=12% Similarity=0.033 Sum_probs=23.7
Q ss_pred cCcccEEEEecccc-ccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 15 LESVQVLVIDEVDF-LFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 15 l~~~~~lViDE~~~-l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
++.-+++|+||+|. +-... ...+.+.++.. ++.-++++.+|
T Consensus 74 f~~~kvvii~~~~~kl~~~~--~~aLl~~le~p---~~~~~~il~~~ 115 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAI--NEQLLTLTGLL---HDDLLLIVRGN 115 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTH--HHHHHHHHTTC---BTTEEEEEEES
T ss_pred ccCCeEEEEECCCCCCChHH--HHHHHHHHhcC---CCCeEEEEEcC
Confidence 45678999999996 53322 35555666542 33344444444
No 160
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=45.78 E-value=9.7 Score=29.34 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=43.6
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc-----c
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI-----A 194 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~ 194 (269)
+.+++|.++++.-+.. +.+.+.+... .+..+..++|+.....+ ......+...|+|+|.- +
T Consensus 98 ~~~~lil~Pt~~L~~q----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l 164 (245)
T 3dkp_A 98 GFRALIISPTRELASQ----------IHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLL 164 (245)
T ss_dssp SCCEEEECSSHHHHHH----------HHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHH
T ss_pred CceEEEEeCCHHHHHH----------HHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHH
Confidence 4579999999886554 4444444322 24566667766432221 11222456789999953 2
Q ss_pred cc---cCCCCCCCeEEE
Q 024287 195 AR---GIDLPETTHIYN 208 (269)
Q Consensus 195 ~~---Gidi~~~~~Vi~ 208 (269)
.. .+++.++.++|.
T Consensus 165 ~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 165 KQDPPGIDLASVEWLVV 181 (245)
T ss_dssp HSSSCSCCCTTCCEEEE
T ss_pred HhCCCCcccccCcEEEE
Confidence 12 467778887773
No 161
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=45.52 E-value=27 Score=28.51 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=26.0
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhc-cCCCccEEEEeccCCc
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYS-SCNNRQTVFASASIPQ 63 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~-~~~~~q~i~~SATl~~ 63 (269)
+..-++++||+|.+. .. ..+..+++... ...+.-+|+.++|+..
T Consensus 131 ~~~~ii~lDE~d~l~-~q---~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 131 KRKTLILIQNPENLL-SE---KILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp SCEEEEEEECCSSSC-CT---HHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred CCceEEEEecHHHhh-cc---hHHHHHHhcccccCCcEEEEEEecCccc
Confidence 344599999999877 22 34444444221 1234566677888643
No 162
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=45.50 E-value=15 Score=28.89 Aligned_cols=16 Identities=19% Similarity=0.602 Sum_probs=12.6
Q ss_pred CcccEEEEeccccccC
Q 024287 16 ESVQVLVIDEVDFLFN 31 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~ 31 (269)
..-.++++||+|.++.
T Consensus 123 ~~~~vl~iDEid~l~~ 138 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLD 138 (272)
T ss_dssp SSEEEEEECCHHHHTT
T ss_pred cCCcEEEEEChhhhhc
Confidence 3467999999998853
No 163
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.48 E-value=27 Score=30.55 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=26.9
Q ss_pred CcccEEEEeccccccCCc-hhhhHHHHHHhhhccCCCccEEEEeccCC
Q 024287 16 ESVQVLVIDEVDFLFNSS-KQVSSLKKLLASYSSCNNRQTVFASASIP 62 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~-~~~~~i~~i~~~~~~~~~~q~i~~SATl~ 62 (269)
..-.+++|||+|.+.... .....+..+++. .+.++++++++..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~----~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK----TSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH----CSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh----cCCCEEEEEcCCC
Confidence 345699999999876533 122344444443 4567888887753
No 164
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=45.36 E-value=28 Score=28.34 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=17.2
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhh
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLAS 45 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~ 45 (269)
...+++||||+|.|.... ...+.+.++.
T Consensus 107 ~~~kvviIdead~l~~~a--~naLLk~lEe 134 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAA--ANALLKTLEE 134 (334)
T ss_dssp SSCEEEEESCGGGBCHHH--HHHHHHHHTS
T ss_pred CCcEEEEECchhhcCHHH--HHHHHHHhcC
Confidence 456899999999764322 2344444443
No 165
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=44.42 E-value=14 Score=27.78 Aligned_cols=12 Identities=50% Similarity=0.791 Sum_probs=10.1
Q ss_pred ccEEEEeccccc
Q 024287 18 VQVLVIDEVDFL 29 (269)
Q Consensus 18 ~~~lViDE~~~l 29 (269)
-.++|+||+|.+
T Consensus 127 ~~vlviDe~~~l 138 (250)
T 1njg_A 127 FKVYLIDEVHML 138 (250)
T ss_dssp SEEEEEETGGGS
T ss_pred ceEEEEECcccc
Confidence 469999999975
No 166
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=43.67 E-value=33 Score=27.38 Aligned_cols=72 Identities=13% Similarity=0.150 Sum_probs=44.6
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc-----
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA----- 194 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~----- 194 (269)
+.+++|.++++.-+.. ..+.+.+... .+..+..++|+.+....... +. ...|+|+|.-.
T Consensus 56 ~~~~liv~P~~~L~~q----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~ 120 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQ----------VASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLW 120 (337)
T ss_dssp TCCEEEECSSHHHHHH----------HHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHH
T ss_pred cCCEEEEeCCHHHHHH----------HHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHH
Confidence 5789999999876444 4444443321 24678889999887654322 22 36799999632
Q ss_pred c-ccCCCCCCCeEE
Q 024287 195 A-RGIDLPETTHIY 207 (269)
Q Consensus 195 ~-~Gidi~~~~~Vi 207 (269)
. ..+++...++||
T Consensus 121 ~~~~~~~~~~~~iV 134 (337)
T 2z0m_A 121 SKGVIDLSSFEIVI 134 (337)
T ss_dssp HTTSCCGGGCSEEE
T ss_pred HcCCcchhhCcEEE
Confidence 1 224456666666
No 167
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=43.55 E-value=20 Score=25.75 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=11.1
Q ss_pred ccEEEEecccccc
Q 024287 18 VQVLVIDEVDFLF 30 (269)
Q Consensus 18 ~~~lViDE~~~l~ 30 (269)
-.++++||+|.+.
T Consensus 116 ~~vl~iDe~~~l~ 128 (187)
T 2p65_A 116 QVVMFIDEIHTVV 128 (187)
T ss_dssp SEEEEETTGGGGS
T ss_pred ceEEEEeCHHHhc
Confidence 3599999999886
No 168
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=43.19 E-value=30 Score=26.89 Aligned_cols=14 Identities=43% Similarity=0.539 Sum_probs=11.9
Q ss_pred CcccEEEEeccccc
Q 024287 16 ESVQVLVIDEVDFL 29 (269)
Q Consensus 16 ~~~~~lViDE~~~l 29 (269)
..+++|++||++.+
T Consensus 89 ~~~dvViIDEaQF~ 102 (234)
T 2orv_A 89 LGVAVIGIDEGQFF 102 (234)
T ss_dssp TTCSEEEESSGGGC
T ss_pred ccCCEEEEEchhhh
Confidence 56789999999954
No 169
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.14 E-value=21 Score=29.06 Aligned_cols=39 Identities=18% Similarity=0.489 Sum_probs=23.8
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
...+++|+||+|.+.. . ....+...++..+ ....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~-~-~~~~L~~~le~~~--~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN-A-AQNALRRVIERYT--KNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCH-H-HHHHHHHHHHHTT--TTEEEEEEE
T ss_pred CCceEEEEeCCCCCCH-H-HHHHHHHHHhcCC--CCeEEEEEe
Confidence 4578999999997643 2 2355666666542 444554443
No 170
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=42.99 E-value=16 Score=29.49 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=23.3
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
..+++++||+|.+.... ....+...++..+ .+.++++.+
T Consensus 105 ~~~vliiDEi~~l~~~~-~~~~L~~~le~~~--~~~~iI~~~ 143 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAE-SQRHLRSFMEAYS--SNCSIIITA 143 (324)
T ss_dssp CEEEEEEESCCCGGGHH-HHHHHHHHHHHHG--GGCEEEEEE
T ss_pred CCeEEEEECCcccCcHH-HHHHHHHHHHhCC--CCcEEEEEe
Confidence 67899999999764122 2345555555543 345555543
No 171
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=42.79 E-value=27 Score=27.83 Aligned_cols=14 Identities=43% Similarity=0.650 Sum_probs=11.4
Q ss_pred ccEEEEeccccccC
Q 024287 18 VQVLVIDEVDFLFN 31 (269)
Q Consensus 18 ~~~lViDE~~~l~~ 31 (269)
-.+++|||+|.+..
T Consensus 131 ~~vl~iDEid~l~~ 144 (309)
T 3syl_A 131 GGVLFIDEAYYLYR 144 (309)
T ss_dssp TSEEEEETGGGSCC
T ss_pred CCEEEEEChhhhcc
Confidence 35999999998753
No 172
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=41.44 E-value=46 Score=30.09 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=44.7
Q ss_pred CceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc-----c
Q 024287 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA-----A 195 (269)
Q Consensus 122 ~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~-----~ 195 (269)
+++||.++++.-+.. ..+.+.+.+. .++.+..++|+.+...+...+ . ....|+|+|.-. .
T Consensus 62 ~~~lvl~Pt~~L~~Q----------~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~L~~~l~ 127 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQ----------NKSVFSKYFERHGYRVTGISGATAENVPVEQI---V-ENNDIIILTPQILVNNLK 127 (696)
T ss_dssp CCEEEECSSHHHHHH----------HHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---H-HTCSEEEECHHHHHHHHH
T ss_pred CeEEEEECCHHHHHH----------HHHHHHHHhccCCceEEEEeCCccccccHHHh---c-cCCCEEEECHHHHHHHHh
Confidence 789999999775443 3444444432 257899999998754432222 1 247899999742 2
Q ss_pred cc-C-CCCCCCeEEE
Q 024287 196 RG-I-DLPETTHIYN 208 (269)
Q Consensus 196 ~G-i-di~~~~~Vi~ 208 (269)
.+ + ++..+++||.
T Consensus 128 ~~~~~~l~~~~~vVi 142 (696)
T 2ykg_A 128 KGTIPSLSIFTLMIF 142 (696)
T ss_dssp TTSSCCGGGCSEEEE
T ss_pred cCcccccccccEEEE
Confidence 22 2 4566677663
No 173
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=41.24 E-value=40 Score=24.04 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=10.9
Q ss_pred ccEEEEecccccc
Q 024287 18 VQVLVIDEVDFLF 30 (269)
Q Consensus 18 ~~~lViDE~~~l~ 30 (269)
-.++++||+|.+.
T Consensus 116 ~~vl~iDe~~~l~ 128 (195)
T 1jbk_A 116 NVILFIDELHTMV 128 (195)
T ss_dssp TEEEEEETGGGGT
T ss_pred CeEEEEeCHHHHh
Confidence 4489999999876
No 174
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.72 E-value=24 Score=28.68 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=23.0
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
...+++++||+|.+... ....+...++... ....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~--~~~~Ll~~le~~~--~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD--AQSALRRTMETYS--GVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH--HHHHHHHHHHHTT--TTEEEEEEE
T ss_pred CCceEEEEECCCccCHH--HHHHHHHHHHhcC--CCceEEEEe
Confidence 45579999999976432 2345556665532 344455444
No 175
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=39.61 E-value=26 Score=29.28 Aligned_cols=13 Identities=38% Similarity=0.669 Sum_probs=10.6
Q ss_pred cEEEEeccccccC
Q 024287 19 QVLVIDEVDFLFN 31 (269)
Q Consensus 19 ~~lViDE~~~l~~ 31 (269)
.+|+|||+|.+..
T Consensus 209 ~il~iDEid~l~~ 221 (389)
T 3vfd_A 209 SIIFIDQVDSLLC 221 (389)
T ss_dssp EEEEEETGGGGC-
T ss_pred eEEEEECchhhcc
Confidence 5999999998853
No 176
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=38.73 E-value=29 Score=32.95 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=40.9
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc-----
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA----- 194 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~----- 194 (269)
++++||.++++.-+.. ..+.+.+.+. .++.+..+||+.+...+...+. +...|+|+|.-.
T Consensus 296 ~~~vLvl~Pt~~L~~Q----------~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l 361 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQ----------QKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSF 361 (936)
T ss_dssp CCCEEEECSSHHHHHH----------HHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHH----------HHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHH
Confidence 6789999999875444 3444444332 1578999999987655322221 136799998642
Q ss_pred ccc-C-CCCCCCeEE
Q 024287 195 ARG-I-DLPETTHIY 207 (269)
Q Consensus 195 ~~G-i-di~~~~~Vi 207 (269)
..+ + .+..+++||
T Consensus 362 ~~~~~~~l~~~~liV 376 (936)
T 4a2w_A 362 EDGTLTSLSIFTLMI 376 (936)
T ss_dssp HSSSCCCGGGCSEEE
T ss_pred HcCccccccCCCEEE
Confidence 222 2 455667766
No 177
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=38.62 E-value=25 Score=27.67 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=10.5
Q ss_pred cEEEEecccccc
Q 024287 19 QVLVIDEVDFLF 30 (269)
Q Consensus 19 ~~lViDE~~~l~ 30 (269)
.++++||+|.+.
T Consensus 112 ~vl~iDEid~l~ 123 (285)
T 3h4m_A 112 SIIFIDEIDAIA 123 (285)
T ss_dssp EEEEEETTHHHH
T ss_pred eEEEEECHHHhc
Confidence 599999999875
No 178
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=38.03 E-value=32 Score=28.92 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=21.5
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
+.+++|+||+|.+-+.. ..+..+...+....+.+++++|
T Consensus 273 ~~~~viiDE~a~~~~~~---el~~al~~~ls~~~~~kiiiiS 311 (385)
T 2o0j_A 273 SFAMIYIEDCAFIPNFH---DSWLAIQPVISSGRRSKIIITT 311 (385)
T ss_dssp CCSEEEEESGGGSTTHH---HHHHHHHHHHHSTTCCEEEEEE
T ss_pred CCCEEEechhhhcCCCH---HHHHHHHHHhhcCCCCcEEEEe
Confidence 45699999999654312 2333333343323455666655
No 179
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=37.92 E-value=9.6 Score=34.41 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=12.2
Q ss_pred cccEEEEeccccccC
Q 024287 17 SVQVLVIDEVDFLFN 31 (269)
Q Consensus 17 ~~~~lViDE~~~l~~ 31 (269)
.-.++||||||.|.+
T Consensus 204 ~~~ivI~DEAHNL~d 218 (620)
T 4a15_A 204 NQIVIILDEAHNLPD 218 (620)
T ss_dssp GGEEEEETTGGGHHH
T ss_pred CCeEEEEECCCchHH
Confidence 346999999998864
No 180
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=37.42 E-value=16 Score=29.24 Aligned_cols=38 Identities=24% Similarity=0.479 Sum_probs=22.2
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
.-.++|+||+|.+.... ...+...++..+ .+..+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~--~~~L~~~le~~~--~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA--QQALRRTMELYS--NSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH--HHTTHHHHHHTT--TTEEEEEEE
T ss_pred CceEEEEECcccCCHHH--HHHHHHHHhccC--CCceEEEEe
Confidence 36799999999764322 344555555432 444555544
No 181
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=37.22 E-value=92 Score=26.60 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=35.7
Q ss_pred CcccEEEEecccccc--CCchhhhHHHHHHhhhccCCCccEEEEeccCCchhhHHHHHH
Q 024287 16 ESVQVLVIDEVDFLF--NSSKQVSSLKKLLASYSSCNNRQTVFASASIPQHRRFLHNCI 72 (269)
Q Consensus 16 ~~~~~lViDE~~~l~--~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~~~~~~l~~~~ 72 (269)
.+.+++|+|++-++- .+......+..+..... +..-++.++|+..+........+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~--pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK--PDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC--CSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC--CcceEEEEeCccchHHHHHHHHH
Confidence 478899999998654 34435566666666653 45566778888766554444444
No 182
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=37.18 E-value=32 Score=27.71 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=10.6
Q ss_pred cEEEEeccccccC
Q 024287 19 QVLVIDEVDFLFN 31 (269)
Q Consensus 19 ~~lViDE~~~l~~ 31 (269)
-++|+||+|.+..
T Consensus 130 ~vlvlDe~~~~~~ 142 (350)
T 2qen_A 130 FIVAFDEAQYLRF 142 (350)
T ss_dssp EEEEEETGGGGGG
T ss_pred EEEEEeCHHHHhc
Confidence 3899999997754
No 183
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=36.96 E-value=25 Score=28.99 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=24.4
Q ss_pred cccEEEEeccccccCCc------hhhhHHHHHHhhhc---cCCCccEEEEeccCC
Q 024287 17 SVQVLVIDEVDFLFNSS------KQVSSLKKLLASYS---SCNNRQTVFASASIP 62 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~------~~~~~i~~i~~~~~---~~~~~q~i~~SATl~ 62 (269)
.-.+|+|||+|.+.... ........++..+. ......++++.||-.
T Consensus 176 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~ 230 (357)
T 3d8b_A 176 QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNR 230 (357)
T ss_dssp CSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESC
T ss_pred CCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCC
Confidence 34699999999875431 11122333443332 123456777777633
No 184
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=36.79 E-value=49 Score=26.70 Aligned_cols=14 Identities=36% Similarity=0.543 Sum_probs=11.7
Q ss_pred ccEEEEeccccccC
Q 024287 18 VQVLVIDEVDFLFN 31 (269)
Q Consensus 18 ~~~lViDE~~~l~~ 31 (269)
-.+|+|||+|.+..
T Consensus 111 ~~vl~iDEid~l~~ 124 (322)
T 3eie_A 111 PSIIFIDQVDALTG 124 (322)
T ss_dssp SEEEEEECGGGGSC
T ss_pred CeEEEechhhhhhc
Confidence 36999999998865
No 185
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=36.48 E-value=23 Score=29.05 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=17.8
Q ss_pred ccEEEEeccccccCCchhhhHHHHHHhhh
Q 024287 18 VQVLVIDEVDFLFNSSKQVSSLKKLLASY 46 (269)
Q Consensus 18 ~~~lViDE~~~l~~~~~~~~~i~~i~~~~ 46 (269)
-.++++||+|.+.........+..++...
T Consensus 131 ~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp EEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred eEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 44999999998764410224555555543
No 186
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=35.72 E-value=39 Score=29.00 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=23.4
Q ss_pred ecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 14 KLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 14 ~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
.+...+++||||++.+ +. ..+..++..+. ...++++++
T Consensus 125 ~~~~~~~iiiDE~~~~-~~----~~~~~l~~~~~--~~~~~~~vG 162 (459)
T 3upu_A 125 DLAKCRVLICDEVSMY-DR----KLFKILLSTIP--PWCTIIGIG 162 (459)
T ss_dssp CCSSCSEEEESCGGGC-CH----HHHHHHHHHSC--TTCEEEEEE
T ss_pred cccCCCEEEEECchhC-CH----HHHHHHHHhcc--CCCEEEEEC
Confidence 4567899999999943 21 33344444432 456666665
No 187
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=35.18 E-value=30 Score=25.89 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=30.1
Q ss_pred CceecCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 11 HIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 11 ~~~~l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
....++.=+.+|||||.+|. ...+..++.... ..+.|+|++.-+
T Consensus 115 ~~~~~tp~s~lIVD~AekLS-----~kE~~~Lld~A~-~~naqvvll~~~ 158 (189)
T 2l8b_A 115 EGMAFTPGSTVIVDQGEKLS-----LKETLTLLDGAA-RHNVQVLITDSG 158 (189)
T ss_dssp TSCCCCCCCEEEEEESSSHH-----HHHHHHHHHHHH-HTTCCEEEEESS
T ss_pred CCCCCCCCCEEEEechhhcC-----HHHHHHHHHHHH-hcCCEEEEeCCc
Confidence 33334555699999999863 455666666554 356999999766
No 188
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=34.55 E-value=1.9e+02 Score=25.10 Aligned_cols=113 Identities=9% Similarity=-0.028 Sum_probs=64.4
Q ss_pred eeEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCC------CceEEecccCCh
Q 024287 97 HHRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGS------SDVLLLEEEMNF 170 (269)
Q Consensus 97 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~v~~~h~~~~~ 170 (269)
.+.+.-+....|.-.+..+.+.. +++++|.+++...|.+ +++.|...++.. +.+.++....+.
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~~-~~p~lvv~~~~~~A~~----------l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~ 84 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAERH-AGPVVLIAPDMQNALR----------LHDEISQFTDQMVMNLADWETLPYDSFSPH 84 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHS-SSCEEEEESSHHHHHH----------HHHHHHHTCSSCEEECCCCCSCTTCSSCCC
T ss_pred eEEEeCCCchHHHHHHHHHHHHh-CCCEEEEeCCHHHHHH----------HHHHHHhhCCCcEEEEeCcccccccccCCC
Confidence 44555566667777777777654 4689999999887555 566665443322 111112222222
Q ss_pred ----hHHHHHHHHHhcCCccEEEEeccccccCCCCC-----CCeEEEecCCCCcccccc
Q 024287 171 ----NSRAASLLEVRQGGGYLLVSTDIAARGIDLPE-----TTHIYNFDLPRSAIDYLH 220 (269)
Q Consensus 171 ----~~r~~~~~~f~~~~~~iLv~T~~~~~Gidi~~-----~~~Vi~~~~p~~~~~~~q 220 (269)
.+|..++..+..++..|+|+|-....+.=.|. ..+.+..+-..+...+.+
T Consensus 85 ~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~ 143 (483)
T 3hjh_A 85 QDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRT 143 (483)
T ss_dssp HHHHHHHHHHHHHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHH
Confidence 35777888888888788888765444432332 234444444444444433
No 189
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=33.98 E-value=26 Score=28.68 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=16.3
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhh
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLAS 45 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~ 45 (269)
.-.++||||+|.+.. . ....+...++.
T Consensus 119 ~~~vliiDe~~~l~~-~-~~~~Ll~~le~ 145 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSR-H-SFNALLKTLEE 145 (373)
T ss_dssp SSEEEEEECGGGSCH-H-HHHHHHHHHHS
T ss_pred CeEEEEEECcchhcH-H-HHHHHHHHHhc
Confidence 456999999997632 2 23444444443
No 190
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=33.96 E-value=40 Score=25.88 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=7.8
Q ss_pred ccEEEEecccccc
Q 024287 18 VQVLVIDEVDFLF 30 (269)
Q Consensus 18 ~~~lViDE~~~l~ 30 (269)
-.++++||+|.+.
T Consensus 99 ~~vl~iDeid~l~ 111 (262)
T 2qz4_A 99 PCIVYIDEIDAVG 111 (262)
T ss_dssp SEEEEEECC----
T ss_pred CeEEEEeCcchhh
Confidence 3589999999874
No 191
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=33.22 E-value=2.7e+02 Score=25.10 Aligned_cols=87 Identities=11% Similarity=0.118 Sum_probs=54.5
Q ss_pred EEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEe--------------
Q 024287 99 RFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLL-------------- 164 (269)
Q Consensus 99 ~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-------------- 164 (269)
...-+....|.-.+..++... ..++||.+++...|.. +++.|...++.+ .|..+
T Consensus 32 ~l~g~tgs~kt~~~a~~~~~~-~~~~lvv~~~~~~A~q----------l~~el~~~~~~~-~V~~fps~yd~~~pe~~~~ 99 (664)
T 1c4o_A 32 TLLGATGTGKTVTMAKVIEAL-GRPALVLAPNKILAAQ----------LAAEFRELFPEN-AVEYFISYYDYYQPEAYVP 99 (664)
T ss_dssp EEEECTTSCHHHHHHHHHHHH-TCCEEEEESSHHHHHH----------HHHHHHHHCTTS-EEEECCCGGGTSCCCEEEG
T ss_pred EEEcCCCcHHHHHHHHHHHHh-CCCEEEEecCHHHHHH----------HHHHHHHHCCCC-eEEEcCchhhccCcccccc
Confidence 445556667877777777654 3679999999887555 566666554432 23322
Q ss_pred ------cccCC-----hhHHHHHHHHHhcCCccEEEEecccccc
Q 024287 165 ------EEEMN-----FNSRAASLLEVRQGGGYLLVSTDIAARG 197 (269)
Q Consensus 165 ------h~~~~-----~~~r~~~~~~f~~~~~~iLv~T~~~~~G 197 (269)
|...+ ...|..++..+..+...|+|+|-.+..|
T Consensus 100 ~~d~~~~~~~~~~~~i~~~R~~~l~~L~~~~~~ivV~s~~~l~~ 143 (664)
T 1c4o_A 100 GKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYG 143 (664)
T ss_dssp GGTEEECCCCSCCHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSC
T ss_pred hhhhhhhhhcccCHHHHHHHHHHHHHHHhCCCeEEEecHHHHhc
Confidence 23332 3467778888876666677777655455
No 192
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=31.67 E-value=43 Score=25.02 Aligned_cols=44 Identities=23% Similarity=0.142 Sum_probs=23.6
Q ss_pred ccc--EEEEecccccc--CCchhhhHHHHHHhhhccCCCccEEEEeccC
Q 024287 17 SVQ--VLVIDEVDFLF--NSSKQVSSLKKLLASYSSCNNRQTVFASASI 61 (269)
Q Consensus 17 ~~~--~lViDE~~~l~--~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl 61 (269)
+.+ ++|+||...++ +.. ....+...+..+....+..+++.|-..
T Consensus 121 ~~~~~llilDe~~~~~~~d~~-~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 121 GYGKARLVIDSVSALFLDKPA-MARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CSSCEEEEEETGGGGSSSCGG-GHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CCCceEEEEECchHhhcCCHH-HHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 567 99999999776 322 223344444433222455566655544
No 193
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=31.49 E-value=18 Score=15.77 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=7.4
Q ss_pred ceEEEeeccc
Q 024287 123 SGIIFVGEQS 132 (269)
Q Consensus 123 ~~lIF~~s~~ 132 (269)
--|||||.+.
T Consensus 6 vpiiycnrrt 15 (21)
T 8tfv_A 6 VPIIYCNRRT 15 (26)
T ss_dssp CCCEEEEGGG
T ss_pred ccEEEEcCcc
Confidence 3489999865
No 194
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=31.23 E-value=26 Score=25.88 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=10.7
Q ss_pred CcccEEEEeccccc
Q 024287 16 ESVQVLVIDEVDFL 29 (269)
Q Consensus 16 ~~~~~lViDE~~~l 29 (269)
.+.+++|+||++..
T Consensus 114 ~~~~~lilDei~~~ 127 (202)
T 2w58_A 114 KKVPVLMLDDLGAE 127 (202)
T ss_dssp HHSSEEEEEEECCC
T ss_pred cCCCEEEEcCCCCC
Confidence 34579999999754
No 195
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=30.40 E-value=51 Score=26.51 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=20.3
Q ss_pred cEEEEeccccccCC--chhhhHHHHHHhhhccCCCccEEEEec
Q 024287 19 QVLVIDEVDFLFNS--SKQVSSLKKLLASYSSCNNRQTVFASA 59 (269)
Q Consensus 19 ~~lViDE~~~l~~~--~~~~~~i~~i~~~~~~~~~~q~i~~SA 59 (269)
-++|+||+|.+... ......+..+.... .+..+++.+.
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~---~~~~~i~~g~ 178 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNL---KRIKFIMSGS 178 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHC---TTEEEEEEES
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcC---CCeEEEEEcC
Confidence 38999999976542 12233444444332 3445555443
No 196
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=30.15 E-value=31 Score=28.22 Aligned_cols=12 Identities=58% Similarity=0.659 Sum_probs=10.2
Q ss_pred cEEEEecccccc
Q 024287 19 QVLVIDEVDFLF 30 (269)
Q Consensus 19 ~~lViDE~~~l~ 30 (269)
.+++|||+|.+.
T Consensus 191 ~vl~IDEi~~l~ 202 (368)
T 3uk6_A 191 GVLFIDEVHMLD 202 (368)
T ss_dssp CEEEEESGGGSB
T ss_pred ceEEEhhccccC
Confidence 499999999764
No 197
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=29.96 E-value=66 Score=25.99 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=24.8
Q ss_pred cccEEEEeccccccCCc------hhhhHHHHHHhhhcc--CCCccEEEEeccCC
Q 024287 17 SVQVLVIDEVDFLFNSS------KQVSSLKKLLASYSS--CNNRQTVFASASIP 62 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~------~~~~~i~~i~~~~~~--~~~~q~i~~SATl~ 62 (269)
.-.+|+|||+|.+.... .....+..++..+.. .....++++.||-.
T Consensus 105 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 105 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred CCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 34699999999885432 111233334433321 13456777777743
No 198
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=29.91 E-value=1.5e+02 Score=21.03 Aligned_cols=79 Identities=11% Similarity=0.002 Sum_probs=48.2
Q ss_pred hHHHHHHHHhhc--CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCc
Q 024287 108 KYQTLLSLIQSD--APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGG 185 (269)
Q Consensus 108 k~~~l~~ll~~~--~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~ 185 (269)
+.....+++.+. .+.+++|.|.+.+++ ..+.+.|...-+.++-.-.+-|+-. ....
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a----------~~LD~~LW~~~~~sFlPH~~~~~~~------------~~~~ 81 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQA----------YRLDEALWARPAESFVPHNLAGEGP------------RGGA 81 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHH----------HHHHHHTTTSSTTCCCCEEETTCSS------------TTCC
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHH----------HHHHHHHhCCCCCcccCCccCCCCC------------CCCC
Confidence 566667777643 578999999998764 4588888865444332222222221 1245
Q ss_pred cEEEEeccccccCCCCCCCeEEEecC
Q 024287 186 YLLVSTDIAARGIDLPETTHIYNFDL 211 (269)
Q Consensus 186 ~iLv~T~~~~~Gidi~~~~~Vi~~~~ 211 (269)
.|+++++... .-+..+++||.+.
T Consensus 82 PV~L~~~~~~---~~~~~~vLinL~~ 104 (150)
T 3sxu_A 82 PVEIAWPQKR---SSSRRDILISLRT 104 (150)
T ss_dssp SEEEECTTSC---CCSCCSEEEECCS
T ss_pred CEEEeCCCCC---CCCcCCEEEECCC
Confidence 6999876421 1234679999873
No 199
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=29.78 E-value=36 Score=27.98 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=21.6
Q ss_pred ccEEEEeccccccCCchhhhHHHHHHhhhcc--CCCccEEEEecc
Q 024287 18 VQVLVIDEVDFLFNSSKQVSSLKKLLASYSS--CNNRQTVFASAS 60 (269)
Q Consensus 18 ~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~--~~~~q~i~~SAT 60 (269)
-.++|+||+|.+ + ......+..++..... ..+..+++.|..
T Consensus 126 ~~vlilDE~~~l-~-~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 126 YMFLVLDDAFNL-A-PDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp CEEEEEETGGGS-C-HHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred eEEEEEECcccc-c-hHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 459999999976 2 2233444444443321 024455555443
No 200
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=29.72 E-value=50 Score=27.17 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=12.0
Q ss_pred cccEEEEeccccccC
Q 024287 17 SVQVLVIDEVDFLFN 31 (269)
Q Consensus 17 ~~~~lViDE~~~l~~ 31 (269)
.-.+|+|||+|.+..
T Consensus 143 ~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 143 KPSIIFIDQVDALTG 157 (355)
T ss_dssp SSEEEEEECGGGGTC
T ss_pred CCeEEEEechHhhcc
Confidence 346999999998764
No 201
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=29.64 E-value=21 Score=28.49 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=12.2
Q ss_pred CcccEEEEecccccc
Q 024287 16 ESVQVLVIDEVDFLF 30 (269)
Q Consensus 16 ~~~~~lViDE~~~l~ 30 (269)
..-.++|+||+|.+.
T Consensus 101 ~~~~vliiDe~~~l~ 115 (319)
T 2chq_A 101 APFKIIFLDEADALT 115 (319)
T ss_dssp CCCEEEEEETGGGSC
T ss_pred CCceEEEEeCCCcCC
Confidence 457899999999763
No 202
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=28.94 E-value=56 Score=20.65 Aligned_cols=35 Identities=9% Similarity=0.150 Sum_probs=24.6
Q ss_pred CceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCC
Q 024287 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMN 169 (269)
Q Consensus 122 ~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~ 169 (269)
.++++||.+-.. .......|.+. ++++..+.|++.
T Consensus 54 ~~ivvyC~~g~r----------s~~a~~~L~~~---G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLL----------SQVAALYLEAE---GYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHH----------HHHHHHHHHHH---TCCEEEETTGGG
T ss_pred CCEEEEcCCCCh----------HHHHHHHHHHc---CCcEEEEcccHH
Confidence 789999988543 33456667666 556778888875
No 203
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=28.77 E-value=49 Score=21.35 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=25.1
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCC
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMN 169 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~ 169 (269)
..++++||.+-.. .......|.+. ++++..+.|++.
T Consensus 56 ~~~iv~yC~~g~r----------s~~a~~~L~~~---G~~v~~l~GG~~ 91 (103)
T 3eme_A 56 NEIYYIVCAGGVR----------SAKVVEYLEAN---GIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSH----------HHHHHHHHHTT---TCEEEEETTHHH
T ss_pred CCeEEEECCCChH----------HHHHHHHHHHC---CCCeEEeCCCHH
Confidence 4679999987654 33466667665 557888888864
No 204
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=28.36 E-value=53 Score=21.53 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=29.0
Q ss_pred HHHHHhhc-CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCC
Q 024287 112 LLSLIQSD-APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMN 169 (269)
Q Consensus 112 l~~ll~~~-~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~ 169 (269)
+.+.+... +..++++||.+-.. ....+..|.+. ++++..+.|++.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~r----------s~~aa~~L~~~---G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNR----------SAAAVEFLSQL---GLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHH----------HHHHHHHHHTT---TCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcH----------HHHHHHHHHHc---CCCEEEEcCcHH
Confidence 33344443 34679999987543 33456667665 557888999975
No 205
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=28.33 E-value=54 Score=29.84 Aligned_cols=71 Identities=7% Similarity=0.047 Sum_probs=44.8
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec-----cc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD-----IA 194 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~-----~~ 194 (269)
.++++++.++++.-|.. ..+.++.....+..+..++|+....++ ..+..+|+|+|+ .+
T Consensus 67 ~~~~~l~i~P~r~La~q----------~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l 129 (702)
T 2p6r_A 67 KGGKSLYVVPLRALAGE----------KYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLI 129 (702)
T ss_dssp TTCCEEEEESSHHHHHH----------HHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHH
T ss_pred hCCcEEEEeCcHHHHHH----------HHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHH
Confidence 35789999999875443 444443222236789999998876553 124678999996 22
Q ss_pred cccCC-CCCCCeEE
Q 024287 195 ARGID-LPETTHIY 207 (269)
Q Consensus 195 ~~Gid-i~~~~~Vi 207 (269)
..+.. +.++++||
T Consensus 130 ~~~~~~l~~~~~vI 143 (702)
T 2p6r_A 130 RNRASWIKAVSCLV 143 (702)
T ss_dssp HTTCSGGGGCCEEE
T ss_pred HcChhHHhhcCEEE
Confidence 22322 55667766
No 206
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=27.72 E-value=41 Score=23.37 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=10.0
Q ss_pred cEEEEecccccc
Q 024287 19 QVLVIDEVDFLF 30 (269)
Q Consensus 19 ~~lViDE~~~l~ 30 (269)
..+++||+|.+.
T Consensus 78 g~l~ldei~~l~ 89 (145)
T 3n70_A 78 GTLVLSHPEHLT 89 (145)
T ss_dssp SCEEEECGGGSC
T ss_pred cEEEEcChHHCC
Confidence 589999999764
No 207
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=27.70 E-value=45 Score=27.90 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=29.2
Q ss_pred cEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 19 QVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 19 ~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
.++++||...=++.. ....+.+.+..+. .+.|+++.|-.
T Consensus 317 ~~LlLDEpt~~LD~~-~~~~l~~~L~~l~--~~~~vi~itH~ 355 (415)
T 4aby_A 317 PSVVFDEVDAGIGGA-AAIAVAEQLSRLA--DTRQVLVVTHL 355 (415)
T ss_dssp SEEEESSTTTTCCHH-HHHHHHHHHHHHT--TTSEEEEECSC
T ss_pred CEEEEECCCCCCCHH-HHHHHHHHHHHHh--CCCEEEEEeCc
Confidence 899999998766655 4577777777764 46788888754
No 208
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.59 E-value=25 Score=30.20 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=11.5
Q ss_pred CcccEEEEeccccccCC
Q 024287 16 ESVQVLVIDEVDFLFNS 32 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~ 32 (269)
.+-.+++|||+|.+...
T Consensus 105 ~~~~iLfIDEI~~l~~~ 121 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKS 121 (447)
T ss_dssp TCCEEEEEETTTCC---
T ss_pred CCCcEEEEeChhhhCHH
Confidence 34569999999977543
No 209
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=26.65 E-value=1.3e+02 Score=25.74 Aligned_cols=57 Identities=9% Similarity=0.025 Sum_probs=38.2
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEecc
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDI 193 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 193 (269)
..++++|.++++.-+.. ..+.+.+... .+..+..++|+.+..++ ..+...|+|+|.-
T Consensus 156 ~~~~vlvl~P~~~L~~Q----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~ 213 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQ----------MADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQ 213 (510)
T ss_dssp CSSEEEEEESSHHHHHH----------HHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHH
T ss_pred CCCeEEEEECcHHHHHH----------HHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHH
Confidence 34599999999775333 4455544311 23468889999887664 3567889999974
No 210
>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}
Probab=26.46 E-value=37 Score=24.17 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=25.2
Q ss_pred EEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEe
Q 024287 20 VLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFAS 58 (269)
Q Consensus 20 ~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~S 58 (269)
--|.|+++ ++... ....+++.+..+......|++.++
T Consensus 15 ~~V~D~A~-vLs~~-~~~~L~~~l~~l~~~tg~qi~Vvt 51 (148)
T 2kpt_A 15 DNVTDYTG-QISSS-DITNIQAAIDDVKASEQKVIFVVF 51 (148)
T ss_dssp CSEEESSS-CSCHH-HHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred ceeeeCCC-CCCHH-HHHHHHHHHHHHHHhhCCEEEEEE
Confidence 35899999 55444 457777777777555667777763
No 211
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=25.15 E-value=43 Score=28.70 Aligned_cols=11 Identities=55% Similarity=0.827 Sum_probs=9.8
Q ss_pred cEEEEeccccc
Q 024287 19 QVLVIDEVDFL 29 (269)
Q Consensus 19 ~~lViDE~~~l 29 (269)
+++++||+|.|
T Consensus 297 ~VliIDEa~~l 307 (456)
T 2c9o_A 297 GVLFVDEVHML 307 (456)
T ss_dssp CEEEEESGGGC
T ss_pred eEEEEechhhc
Confidence 59999999976
No 212
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=25.10 E-value=57 Score=20.91 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=24.9
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCC
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMN 169 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~ 169 (269)
..++++||.+-.. .......|.+. ++++..+.|++.
T Consensus 56 ~~~ivvyC~~g~r----------s~~a~~~L~~~---G~~v~~l~GG~~ 91 (100)
T 3foj_A 56 NETYYIICKAGGR----------SAQVVQYLEQN---GVNAVNVEGGMD 91 (100)
T ss_dssp TSEEEEECSSSHH----------HHHHHHHHHTT---TCEEEEETTHHH
T ss_pred CCcEEEEcCCCch----------HHHHHHHHHHC---CCCEEEecccHH
Confidence 4679999987543 33456667665 557888888864
No 213
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=24.38 E-value=74 Score=27.35 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=22.7
Q ss_pred cccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 17 SVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
..+++||||+- |++.+ .+..++... ...++++++-.
T Consensus 234 ~~d~liiDE~s-m~~~~----~l~~l~~~~---~~~~vilvGD~ 269 (446)
T 3vkw_A 234 QFKRLFIDEGL-MLHTG----CVNFLVEMS---LCDIAYVYGDT 269 (446)
T ss_dssp CCSEEEEETGG-GSCHH----HHHHHHHHT---TCSEEEEEECT
T ss_pred cCCEEEEeCcc-cCCHH----HHHHHHHhC---CCCEEEEecCc
Confidence 47899999998 65544 233333333 23777777755
No 214
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=24.36 E-value=27 Score=30.96 Aligned_cols=78 Identities=5% Similarity=-0.055 Sum_probs=43.1
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhh-cCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc-----
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNS-YKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA----- 194 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~----- 194 (269)
..++||.++++.-|..+ ...+..+.... ......+..++|+..... .++.+..+...|+|+|.--
T Consensus 95 ~~~~lvl~Ptr~La~Q~------~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~~~IlV~Tp~~l~~~l 165 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQI------EAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVL 165 (579)
T ss_dssp SCCEEEECSSHHHHHHH------HHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHH
T ss_pred CCeEEEEcchHHHHHHH------HHHHHHHHhhcccccceEEEEEECCccHHH---HHHHHhcCCCCEEEECHHHHHHHH
Confidence 35899999999875553 12222222111 112345667777765433 3455555667899999632
Q ss_pred cc--cCCCCCCCeEE
Q 024287 195 AR--GIDLPETTHIY 207 (269)
Q Consensus 195 ~~--Gidi~~~~~Vi 207 (269)
.. ...+..+++||
T Consensus 166 ~~~~~~~~~~~~~lV 180 (579)
T 3sqw_A 166 EKYSNKFFRFVDYKV 180 (579)
T ss_dssp HHHHHHHCTTCCEEE
T ss_pred HhccccccccCCEEE
Confidence 11 23455666655
No 215
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=23.72 E-value=60 Score=28.21 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=24.4
Q ss_pred cEEEEeccccccCCc------h---hhhHHHHHHhhhccCCCccEEEEeccCCc
Q 024287 19 QVLVIDEVDFLFNSS------K---QVSSLKKLLASYSSCNNRQTVFASASIPQ 63 (269)
Q Consensus 19 ~~lViDE~~~l~~~~------~---~~~~i~~i~~~~~~~~~~q~i~~SATl~~ 63 (269)
.++++||+|.+.... . ....+...++.. .....++++.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~--~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL--KQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHS--CTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhcc--ccCCceEEEEecCCc
Confidence 589999999876532 0 112233333332 245567777777543
No 216
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=23.54 E-value=43 Score=27.34 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=11.9
Q ss_pred ccEEEEeccccccCC
Q 024287 18 VQVLVIDEVDFLFNS 32 (269)
Q Consensus 18 ~~~lViDE~~~l~~~ 32 (269)
-.++|+||+|.+.+.
T Consensus 129 ~~vlilDE~~~l~~~ 143 (386)
T 2qby_A 129 QVVIVLDEIDAFVKK 143 (386)
T ss_dssp CEEEEEETHHHHHHS
T ss_pred eEEEEEcChhhhhcc
Confidence 458999999987643
No 217
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=23.47 E-value=47 Score=27.24 Aligned_cols=13 Identities=38% Similarity=0.680 Sum_probs=10.8
Q ss_pred EEEEeccccccCC
Q 024287 20 VLVIDEVDFLFNS 32 (269)
Q Consensus 20 ~lViDE~~~l~~~ 32 (269)
++|+||+|.+...
T Consensus 136 vlilDEi~~l~~~ 148 (384)
T 2qby_B 136 IIYLDEVDTLVKR 148 (384)
T ss_dssp EEEEETTHHHHHS
T ss_pred EEEEECHHHhccC
Confidence 9999999987543
No 218
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=23.45 E-value=29 Score=26.94 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=11.6
Q ss_pred ccEEEEeccccccC
Q 024287 18 VQVLVIDEVDFLFN 31 (269)
Q Consensus 18 ~~~lViDE~~~l~~ 31 (269)
..++++||+|.+..
T Consensus 104 ~~vl~iDEid~l~~ 117 (268)
T 2r62_A 104 PSIIFIDEIDAIGK 117 (268)
T ss_dssp SCEEEESCGGGTTC
T ss_pred CeEEEEeChhhhcc
Confidence 46999999998754
No 219
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=23.38 E-value=4.1e+02 Score=23.92 Aligned_cols=89 Identities=10% Similarity=0.126 Sum_probs=54.3
Q ss_pred eEEEEecCcchHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEec------------
Q 024287 98 HRFVICGKKMKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLE------------ 165 (269)
Q Consensus 98 ~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h------------ 165 (269)
+...-+....|.-.+..++.... .++||.+++...|.. ++..|...++.+ .|..+-
T Consensus 35 ~~l~g~~gs~k~~~~a~~~~~~~-~~~lvv~~~~~~A~~----------l~~el~~~~~~~-~v~~fps~yd~~~pe~~~ 102 (661)
T 2d7d_A 35 QTLLGATGTGKTFTVSNLIKEVN-KPTLVIAHNKTLAGQ----------LYSEFKEFFPNN-AVEYFVSYYDYYQPEAYV 102 (661)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHC-CCEEEECSSHHHHHH----------HHHHHHHHCTTS-EEEEECCCEEEEECCEEE
T ss_pred EEEECcCCcHHHHHHHHHHHHhC-CCEEEEECCHHHHHH----------HHHHHHHHcCCC-cEEEccccccccCccccC
Confidence 34455566677777777776643 579999999887655 555555554322 233222
Q ss_pred --------ccC--C---hhHHHHHHHHHhcCCccEEEEeccccccC
Q 024287 166 --------EEM--N---FNSRAASLLEVRQGGGYLLVSTDIAARGI 198 (269)
Q Consensus 166 --------~~~--~---~~~r~~~~~~f~~~~~~iLv~T~~~~~Gi 198 (269)
... + ...|..++..+..+...|+|+|-.+..++
T Consensus 103 ~~~d~y~~~~~~~~~~i~~~Rl~~l~~L~~~~~~ivV~sv~al~~l 148 (661)
T 2d7d_A 103 PQTDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCIYGL 148 (661)
T ss_dssp TTTTEEECCEEEECHHHHHHHHHHHHHHHHCSCEEEEECGGGGSCB
T ss_pred CcchhhhhhhcccCHHHHHHHHHHHHHHHhCCCeEEEecHHHHcCC
Confidence 222 1 35677888888766655777766544443
No 220
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=23.30 E-value=73 Score=25.03 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=12.5
Q ss_pred cccEEEEeccccccCC
Q 024287 17 SVQVLVIDEVDFLFNS 32 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~ 32 (269)
.-.++++||+|.+...
T Consensus 113 ~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 113 QPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CSEEEEEETGGGTSBC
T ss_pred CCcEEEeccHHHhccc
Confidence 3469999999988644
No 221
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=23.29 E-value=34 Score=27.16 Aligned_cols=16 Identities=13% Similarity=0.372 Sum_probs=10.1
Q ss_pred cCcccEEEEecccccc
Q 024287 15 LESVQVLVIDEVDFLF 30 (269)
Q Consensus 15 l~~~~~lViDE~~~l~ 30 (269)
..+.+++|+||...+.
T Consensus 145 ~~~p~llilDept~~~ 160 (296)
T 1cr0_A 145 GLGCDVIILDHISIVV 160 (296)
T ss_dssp TTCCSEEEEEEEC---
T ss_pred hcCCCEEEEcCccccC
Confidence 3467789999988654
No 222
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=23.17 E-value=85 Score=26.75 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=24.8
Q ss_pred cccEEEEeccccccCCc------hhhhHHHHHHhhhcc--CCCccEEEEeccCC
Q 024287 17 SVQVLVIDEVDFLFNSS------KQVSSLKKLLASYSS--CNNRQTVFASASIP 62 (269)
Q Consensus 17 ~~~~lViDE~~~l~~~~------~~~~~i~~i~~~~~~--~~~~q~i~~SATl~ 62 (269)
.-.+|+|||+|.+.... ........++..+.. .....++++.||-.
T Consensus 227 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 227 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 34699999999875331 112333444444321 12455666666643
No 223
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=22.77 E-value=66 Score=21.63 Aligned_cols=47 Identities=9% Similarity=0.034 Sum_probs=28.9
Q ss_pred HHHHHhhcC-CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCC
Q 024287 112 LLSLIQSDA-PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMN 169 (269)
Q Consensus 112 l~~ll~~~~-~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~ 169 (269)
+...+.... ..++++||.+-... ........|... ++.+..+.|++.
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~--------~s~~a~~~L~~~---G~~v~~l~GG~~ 108 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTT--------LGKTALLVLLSA---GFEAYELAGALE 108 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCS--------HHHHHHHHHHHH---TCEEEEETTHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCch--------HHHHHHHHHHHc---CCeEEEeCCcHH
Confidence 334444443 45799999886530 023356667766 567888888874
No 224
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=22.59 E-value=93 Score=20.84 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=24.5
Q ss_pred CceEEEee-ccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCCh
Q 024287 122 ESGIIFVG-EQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNF 170 (269)
Q Consensus 122 ~~~lIF~~-s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~ 170 (269)
.++++||. +-.. .......|... ++++..+.|++..
T Consensus 90 ~~ivvyC~~~G~r----------s~~a~~~L~~~---G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMR----------SGSIVNLLSSL---GVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHH----------HHHHHHHHHHT---TCCCEEETTHHHH
T ss_pred CeEEEEECCCChH----------HHHHHHHHHHc---CCceEEEeCcHHH
Confidence 68999994 5432 33456667665 5578899999753
No 225
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=22.17 E-value=1.5e+02 Score=23.95 Aligned_cols=70 Identities=11% Similarity=0.074 Sum_probs=41.1
Q ss_pred CCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcC-CCCceEEecccCChhHHHHHHHHHhcCCccEEEEeccc----
Q 024287 120 APESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYK-GSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIA---- 194 (269)
Q Consensus 120 ~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~---- 194 (269)
.+.+++|.++++.-+.. ..+.+.+... .+..+...+++..... ......|+|+|.-.
T Consensus 74 ~~~~~lil~P~~~L~~q----------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~ 135 (395)
T 3pey_A 74 ASPQAICLAPSRELARQ----------TLEVVQEMGKFTKITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDL 135 (395)
T ss_dssp CSCCEEEECSSHHHHHH----------HHHHHHHHTTTSCCCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHH
T ss_pred CCccEEEECCCHHHHHH----------HHHHHHHHhcccCeeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHH
Confidence 45689999999876444 4444444321 2355666666643322 12356799998642
Q ss_pred --cccCCCCCCCeEE
Q 024287 195 --ARGIDLPETTHIY 207 (269)
Q Consensus 195 --~~Gidi~~~~~Vi 207 (269)
....++..+++||
T Consensus 136 ~~~~~~~~~~~~~iI 150 (395)
T 3pey_A 136 MRRKLMQLQKIKIFV 150 (395)
T ss_dssp HHTTCBCCTTCCEEE
T ss_pred HHcCCcccccCCEEE
Confidence 2335566777766
No 226
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=22.05 E-value=1.6e+02 Score=24.89 Aligned_cols=59 Identities=17% Similarity=0.048 Sum_probs=38.4
Q ss_pred chHHHHHHHHhhcCCCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCc-eEEecccCChhHHHHHHHHHhcCCc
Q 024287 107 MKYQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSD-VLLLEEEMNFNSRAASLLEVRQGGG 185 (269)
Q Consensus 107 ~k~~~l~~ll~~~~~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-v~~~h~~~~~~~r~~~~~~f~~~~~ 185 (269)
.|.......+... +.+++|.|+++.-+ ....+.+.+ + +.. +..+||+.+. ..
T Consensus 120 GKT~~~l~~i~~~-~~~~Lvl~P~~~L~----------~Q~~~~~~~-~--~~~~v~~~~g~~~~-------------~~ 172 (472)
T 2fwr_A 120 GKTHVAMAAINEL-STPTLIVVPTLALA----------EQWKERLGI-F--GEEYVGEFSGRIKE-------------LK 172 (472)
T ss_dssp CHHHHHHHHHHHH-CSCEEEEESSHHHH----------HHHHHHGGG-G--CGGGEEEBSSSCBC-------------CC
T ss_pred CHHHHHHHHHHHc-CCCEEEEECCHHHH----------HHHHHHHHh-C--CCcceEEECCCcCC-------------cC
Confidence 4555544444443 57999999997753 335556665 3 467 8899998753 34
Q ss_pred cEEEEec
Q 024287 186 YLLVSTD 192 (269)
Q Consensus 186 ~iLv~T~ 192 (269)
.|+|+|.
T Consensus 173 ~Ivv~T~ 179 (472)
T 2fwr_A 173 PLTVSTY 179 (472)
T ss_dssp SEEEEEH
T ss_pred CEEEEEc
Confidence 6777775
No 227
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=22.04 E-value=62 Score=23.21 Aligned_cols=13 Identities=0% Similarity=0.266 Sum_probs=7.9
Q ss_pred hhhHHHHHHhhhc
Q 024287 35 QVSSLKKLLASYS 47 (269)
Q Consensus 35 ~~~~i~~i~~~~~ 47 (269)
.++.+.+++..+.
T Consensus 60 ~Rp~l~~ll~~~~ 72 (169)
T 3g13_A 60 KREDFQRMINDCM 72 (169)
T ss_dssp CSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4566666666654
No 228
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=21.99 E-value=51 Score=28.86 Aligned_cols=77 Identities=6% Similarity=-0.000 Sum_probs=42.8
Q ss_pred CceEEEeeccchhhhhcCCCCchHHHHHHHhhhc-CCCCceEEecccCChhHHHHHHHHHhcCCccEEEEecccc-----
Q 024287 122 ESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSY-KGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTDIAA----- 195 (269)
Q Consensus 122 ~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~----- 195 (269)
.++||.++++.-|..+ ...+..+..... .....+..+.|+..... .++.+..+...|+|+|.---
T Consensus 147 ~~~lil~Ptr~La~Q~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~Iiv~Tp~~l~~~l~ 217 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQI------EAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLE 217 (563)
T ss_dssp CCEEEECSSHHHHHHH------HHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHH------HHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcCCCCEEEECcHHHHHHHH
Confidence 4899999999876553 122222222111 12345667777765443 34455556778999997421
Q ss_pred c--cCCCCCCCeEE
Q 024287 196 R--GIDLPETTHIY 207 (269)
Q Consensus 196 ~--Gidi~~~~~Vi 207 (269)
. ...+..+++||
T Consensus 218 ~~~~~~~~~~~~lV 231 (563)
T 3i5x_A 218 KYSNKFFRFVDYKV 231 (563)
T ss_dssp HHHHHHCTTCCEEE
T ss_pred hccccccccceEEE
Confidence 1 22355666655
No 229
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=21.60 E-value=81 Score=20.54 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=24.0
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCC
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMN 169 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~ 169 (269)
..++++||.+=.. ....+..|.+. ++++..+.||+.
T Consensus 56 ~~~ivv~C~~G~r----------S~~aa~~L~~~---G~~~~~l~GG~~ 91 (103)
T 3iwh_A 56 NEIYYIVCAGGVR----------SAKVVEYLEAN---GIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSH----------HHHHHHHHHTT---TCEEEEETTHHH
T ss_pred CCeEEEECCCCHH----------HHHHHHHHHHc---CCCEEEecChHH
Confidence 4678999987543 33456677766 666666778763
No 230
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=21.44 E-value=60 Score=17.72 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=16.7
Q ss_pred ecccCChhHHHHHHHHHhc
Q 024287 164 LEEEMNFNSRAASLLEVRQ 182 (269)
Q Consensus 164 ~h~~~~~~~r~~~~~~f~~ 182 (269)
.||+|.-.+.++.++.|-.
T Consensus 4 ~hG~MD~~~hE~Ty~gFi~ 22 (43)
T 1qle_D 4 KHGEMDIRHQQATFAGFIK 22 (43)
T ss_dssp CTTCSCCHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHH
Confidence 5899999999999999864
No 231
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=21.27 E-value=66 Score=29.35 Aligned_cols=55 Identities=9% Similarity=0.024 Sum_probs=37.1
Q ss_pred CCceEEEeeccchhhhhcCCCCchHHHHHHHhhhcCCCCceEEecccCChhHHHHHHHHHhcCCccEEEEec
Q 024287 121 PESGIIFVGEQSEKSKKAGNAPSTTLLVDFLSNSYKGSSDVLLLEEEMNFNSRAASLLEVRQGGGYLLVSTD 192 (269)
Q Consensus 121 ~~~~lIF~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~ 192 (269)
++++++.++++.-|.. ..+.+......+..+..++|+.+...+. .+..+|+|+|+
T Consensus 68 ~~~~l~i~P~raLa~q----------~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tp 122 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEE----------KFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATA 122 (720)
T ss_dssp CSEEEEECSSGGGHHH----------HHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECH
T ss_pred CCEEEEEcCcHHHHHH----------HHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECH
Confidence 5789999999886544 4444432222267899999988765541 24578999997
No 232
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=20.88 E-value=98 Score=28.17 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=25.0
Q ss_pred cCcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEeccCC
Q 024287 15 LESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASASIP 62 (269)
Q Consensus 15 l~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SATl~ 62 (269)
+.+.+++|||||=.+ -.+.+..++. .-..++||.|..
T Consensus 253 ~~~~dlliVDEAAaI-----p~pll~~ll~------~~~~v~~~tTv~ 289 (671)
T 2zpa_A 253 DEQADWLVVDEAAAI-----PAPLLHQLVS------RFPRTLLTTTVQ 289 (671)
T ss_dssp CCCCSEEEEETGGGS-----CHHHHHHHHT------TSSEEEEEEEBS
T ss_pred cccCCEEEEEchhcC-----CHHHHHHHHh------hCCeEEEEecCC
Confidence 445889999999843 2466677774 335577777753
No 233
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=20.57 E-value=1e+02 Score=22.02 Aligned_cols=13 Identities=0% Similarity=0.166 Sum_probs=8.4
Q ss_pred hhhHHHHHHhhhc
Q 024287 35 QVSSLKKLLASYS 47 (269)
Q Consensus 35 ~~~~i~~i~~~~~ 47 (269)
.++.+.++++.+.
T Consensus 58 ~Rp~l~~ll~~~~ 70 (167)
T 3guv_A 58 GRIQFNRMMEDIK 70 (167)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 4566777776665
No 234
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.37 E-value=97 Score=24.94 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=26.7
Q ss_pred CcccEEEEeccccccCCchhhhHHHHHHhhhccCCCccEEEEecc
Q 024287 16 ESVQVLVIDEVDFLFNSSKQVSSLKKLLASYSSCNNRQTVFASAS 60 (269)
Q Consensus 16 ~~~~~lViDE~~~l~~~~~~~~~i~~i~~~~~~~~~~q~i~~SAT 60 (269)
..-.++++||.-.-++.. ....+..++..+. ...++++.|-.
T Consensus 240 ~~~~~lllDEp~~~LD~~-~~~~l~~~l~~~~--~~~~vi~~tH~ 281 (322)
T 1e69_A 240 KPSPFYVLDEVDSPLDDY-NAERFKRLLKENS--KHTQFIVITHN 281 (322)
T ss_dssp SCCSEEEEESCCSSCCHH-HHHHHHHHHHHHT--TTSEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHH-HHHHHHHHHHHhc--CCCeEEEEECC
Confidence 345688899988666655 4466666666653 35666666644
No 235
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=20.02 E-value=82 Score=25.04 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=10.7
Q ss_pred ccEEEEecccccc
Q 024287 18 VQVLVIDEVDFLF 30 (269)
Q Consensus 18 ~~~lViDE~~~l~ 30 (269)
-.++++||+|.+.
T Consensus 109 p~il~iDEid~l~ 121 (301)
T 3cf0_A 109 PCVLFFDELDSIA 121 (301)
T ss_dssp SEEEEECSTTHHH
T ss_pred CeEEEEEChHHHh
Confidence 3699999999765
Done!