Query 024288
Match_columns 269
No_of_seqs 182 out of 1706
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:28:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1677 CCCH-type Zn-finger pr 99.4 3.4E-13 7.5E-18 125.2 7.1 119 94-262 87-208 (332)
2 KOG1677 CCCH-type Zn-finger pr 99.3 2E-12 4.3E-17 120.1 4.3 82 83-183 122-205 (332)
3 KOG1595 CCCH-type Zn-finger pr 99.2 1.2E-11 2.7E-16 118.5 4.4 97 90-259 198-295 (528)
4 COG5063 CTH1 CCCH-type Zn-fing 99.2 2.2E-11 4.8E-16 109.4 4.9 115 86-262 221-345 (351)
5 KOG1040 Polyadenylation factor 99.1 3.3E-11 7.2E-16 111.1 4.3 112 90-259 74-186 (325)
6 COG5063 CTH1 CCCH-type Zn-fing 99.0 1.1E-09 2.4E-14 98.6 8.6 76 149-263 222-306 (351)
7 KOG1595 CCCH-type Zn-finger pr 98.8 6.9E-09 1.5E-13 99.9 4.7 99 47-181 195-293 (528)
8 PF00642 zf-CCCH: Zinc finger 98.6 1.5E-08 3.3E-13 60.0 0.9 25 91-115 1-26 (27)
9 KOG1763 Uncharacterized conser 98.6 6.5E-09 1.4E-13 93.2 -1.3 108 55-183 66-194 (343)
10 PF00642 zf-CCCH: Zinc finger 98.5 2.3E-08 5E-13 59.2 0.1 26 230-255 1-27 (27)
11 COG5084 YTH1 Cleavage and poly 98.5 7E-07 1.5E-11 81.0 9.4 60 90-181 101-160 (285)
12 COG5252 Uncharacterized conser 98.3 9.5E-08 2.1E-12 83.5 0.1 84 92-183 84-179 (299)
13 KOG1492 C3H1-type Zn-finger pr 98.2 4.8E-07 1E-11 78.9 2.3 108 93-258 206-315 (377)
14 smart00356 ZnF_C3H1 zinc finge 98.2 8.1E-07 1.7E-11 52.0 2.1 26 91-116 2-27 (27)
15 KOG1040 Polyadenylation factor 98.1 2E-06 4.3E-11 79.7 3.9 110 95-256 47-158 (325)
16 smart00356 ZnF_C3H1 zinc finge 98.1 2.2E-06 4.8E-11 50.1 2.2 26 230-255 2-27 (27)
17 KOG1492 C3H1-type Zn-finger pr 98.1 2.3E-06 5.1E-11 74.7 3.0 103 92-256 232-335 (377)
18 KOG2494 C3H1-type Zn-finger pr 98.0 5.1E-06 1.1E-10 76.0 4.2 62 90-182 34-96 (331)
19 KOG2494 C3H1-type Zn-finger pr 97.7 1.6E-05 3.5E-10 72.8 1.5 63 155-262 37-100 (331)
20 KOG2333 Uncharacterized conser 97.3 9.7E-05 2.1E-09 71.1 1.7 65 154-259 75-144 (614)
21 KOG4791 Uncharacterized conser 97.0 0.00025 5.5E-09 67.9 1.4 80 94-255 4-84 (667)
22 KOG2185 Predicted RNA-processi 96.8 0.00046 9.9E-09 65.0 1.4 39 227-265 135-173 (486)
23 KOG2333 Uncharacterized conser 96.8 0.0005 1.1E-08 66.3 1.5 63 92-181 75-142 (614)
24 COG5084 YTH1 Cleavage and poly 96.7 0.0028 6.1E-08 57.8 5.5 54 93-180 134-190 (285)
25 PF14608 zf-CCCH_2: Zinc finge 96.3 0.0026 5.6E-08 34.4 1.6 19 234-254 1-19 (19)
26 KOG2185 Predicted RNA-processi 96.0 0.0034 7.3E-08 59.3 1.6 26 92-117 139-164 (486)
27 PF14608 zf-CCCH_2: Zinc finge 95.9 0.0051 1.1E-07 33.2 1.5 19 95-115 1-19 (19)
28 KOG4791 Uncharacterized conser 95.0 0.024 5.2E-07 54.7 3.7 110 94-257 33-143 (667)
29 COG5152 Uncharacterized conser 94.7 0.012 2.6E-07 50.7 0.8 29 231-259 140-169 (259)
30 KOG3702 Nuclear polyadenylated 94.2 0.11 2.3E-06 52.2 6.2 21 95-118 546-566 (681)
31 KOG1039 Predicted E3 ubiquitin 94.0 0.062 1.3E-06 50.5 4.1 32 231-262 92-123 (344)
32 COG5152 Uncharacterized conser 94.0 0.02 4.4E-07 49.4 0.7 31 89-119 137-168 (259)
33 KOG1763 Uncharacterized conser 92.5 0.044 9.6E-07 49.9 0.6 35 228-262 88-122 (343)
34 KOG1813 Predicted E3 ubiquitin 92.0 0.051 1.1E-06 49.6 0.4 29 230-258 184-213 (313)
35 KOG1039 Predicted E3 ubiquitin 89.2 0.14 3E-06 48.2 0.5 24 94-117 9-32 (344)
36 KOG1813 Predicted E3 ubiquitin 88.4 0.16 3.5E-06 46.4 0.4 32 88-119 181-213 (313)
37 PF10650 zf-C3H1: Putative zin 86.2 0.45 9.8E-06 26.9 1.3 20 234-254 2-22 (23)
38 KOG2202 U2 snRNP splicing fact 76.3 1.2 2.5E-05 40.1 0.9 27 90-116 149-175 (260)
39 COG5252 Uncharacterized conser 71.5 0.99 2.2E-05 40.2 -0.7 32 229-260 82-113 (299)
40 KOG0153 Predicted RNA-binding 71.3 1.8 3.9E-05 40.6 0.9 24 233-256 162-185 (377)
41 KOG2202 U2 snRNP splicing fact 57.1 5.5 0.00012 35.9 1.2 28 228-255 148-175 (260)
42 KOG0153 Predicted RNA-binding 56.2 5.2 0.00011 37.6 0.9 25 93-117 161-185 (377)
43 PHA03096 p28-like protein; Pro 46.2 5.5 0.00012 36.6 -0.6 22 241-262 129-150 (284)
44 PF08098 ATX_III: Anemonia sul 45.1 11 0.00025 21.6 0.8 15 234-250 8-22 (27)
45 KOG2135 Proteins containing th 43.4 41 0.00088 33.1 4.8 37 83-119 202-239 (526)
46 KOG3702 Nuclear polyadenylated 30.4 72 0.0016 32.6 4.4 14 104-117 487-500 (681)
47 COG1908 FrhD Coenzyme F420-red 21.0 39 0.00084 27.2 0.5 16 240-256 59-74 (132)
No 1
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.41 E-value=3.4e-13 Score=125.16 Aligned_cols=119 Identities=29% Similarity=0.602 Sum_probs=88.3
Q ss_pred ccChhhh-cCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC-CC
Q 024288 94 RLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY-GD 171 (269)
Q Consensus 94 ~~C~~f~-~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~-G~ 171 (269)
..|.++. ++.|.++..|++.|...+.+..... ..+......++|+.+|..|...|.|.| |+
T Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~-----------------~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge 149 (332)
T KOG1677|consen 87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVR-----------------RSRGERKPERYKTPLCRSFRKSGTCKYRGE 149 (332)
T ss_pred cccccccccCCCCCCCCCCccCcccccccCCcc-----------------ccccccCcccccCCcceeeecCccccccCc
Confidence 6899997 7999999999999998555432210 011222335789999999999999999 99
Q ss_pred CCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc-ccCcCCCCCCCc
Q 024288 172 RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCH 250 (269)
Q Consensus 172 ~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~~f-~~G~C~~G~~C~ 250 (269)
+|+|+|...+..... ++ + .......+||++|.+| .+|.|+||.+|+
T Consensus 150 ~crfah~~~e~r~~~----------~~-------------~----------~~~~~~~~kt~lC~~f~~tG~C~yG~rC~ 196 (332)
T KOG1677|consen 150 QCRFAHGLEELRLPS----------SE-------------N----------QVGNPPKYKTKLCPKFQKTGLCKYGSRCR 196 (332)
T ss_pred hhhhcCCcccccccc----------cc-------------h----------hhcCCCCCCCcCCCccccCCCCCCCCcCe
Confidence 999999975532110 00 0 0123468999999999 779999999999
Q ss_pred cccCCccccccC
Q 024288 251 FAHGQSGILCCL 262 (269)
Q Consensus 251 FaHg~~e~~~~~ 262 (269)
|+|+..++...+
T Consensus 197 F~H~~~~~~~~~ 208 (332)
T KOG1677|consen 197 FIHGEPEDRASN 208 (332)
T ss_pred ecCCCccccccc
Confidence 999999877543
No 2
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.29 E-value=2e-12 Score=120.07 Aligned_cols=82 Identities=39% Similarity=0.801 Sum_probs=66.0
Q ss_pred CCCCCCCccccccChhhh-cCCCCC-CCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhccccccccc
Q 024288 83 NKGITNIFFKTRLCAKFK-HGACRN-GENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKK 160 (269)
Q Consensus 83 ~~~~~~~~yKT~~C~~f~-~G~C~~-G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~ 160 (269)
........|||.+|..|. .|+|+| |++|+|+|+.+++|.+.. .. ......+|||++|.+
T Consensus 122 ~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~--~~-----------------~~~~~~~~kt~lC~~ 182 (332)
T KOG1677|consen 122 RGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSS--EN-----------------QVGNPPKYKTKLCPK 182 (332)
T ss_pred ccccCcccccCCcceeeecCccccccCchhhhcCCccccccccc--ch-----------------hhcCCCCCCCcCCCc
Confidence 445566789999999998 899999 999999999999985420 00 011235899999999
Q ss_pred ccCCCCCCCCCCCccCCCCcccc
Q 024288 161 FYNGEECPYGDRCNFLHEDPAKF 183 (269)
Q Consensus 161 f~~~g~C~~G~~C~f~H~~~~~~ 183 (269)
|.++|.|+||.+|.|+|...+..
T Consensus 183 f~~tG~C~yG~rC~F~H~~~~~~ 205 (332)
T KOG1677|consen 183 FQKTGLCKYGSRCRFIHGEPEDR 205 (332)
T ss_pred cccCCCCCCCCcCeecCCCcccc
Confidence 99999999999999999977543
No 3
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.19 E-value=1.2e-11 Score=118.52 Aligned_cols=97 Identities=29% Similarity=0.594 Sum_probs=80.8
Q ss_pred ccccccChhhhcCCCCCCCCCCCCC-CCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCC
Q 024288 90 FFKTRLCAKFKHGACRNGENCNFAH-GMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECP 168 (269)
Q Consensus 90 ~yKT~~C~~f~~G~C~~G~~C~FaH-~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~ 168 (269)
-||++.|..- .|..|..|.|+| +....|+.|.. ..|..+.|..|.+ |.|.
T Consensus 198 ~fKir~C~R~---~shDwteCPf~HpgEkARRRDPRk-------------------------yhYs~tpCPefrk-G~C~ 248 (528)
T KOG1595|consen 198 SFKIRRCSRP---RSHDWTECPFAHPGEKARRRDPRK-------------------------YHYSSTPCPEFRK-GSCE 248 (528)
T ss_pred eeeecccCCc---cCCCcccCCccCCCcccccCCccc-------------------------ccccCccCccccc-CCCC
Confidence 5899999875 799999999999 67777766543 2567789998754 8999
Q ss_pred CCCCCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCcCCCCCC
Q 024288 169 YGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEK 248 (269)
Q Consensus 169 ~G~~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~~f~~G~C~~G~~ 248 (269)
.||.|.|+|+..+. ..++..|||++|++- |.|++ .-
T Consensus 249 rGD~CEyaHgvfEc-----------------------------------------wLHPa~YRT~~CkDg--~~C~R-rv 284 (528)
T KOG1595|consen 249 RGDSCEYAHGVFEC-----------------------------------------WLHPARYRTRKCKDG--GYCPR-RV 284 (528)
T ss_pred CCCccccccceehh-----------------------------------------hcCHHHhccccccCC--CCCcc-ce
Confidence 99999999998663 234568999999988 99999 99
Q ss_pred CccccCCcccc
Q 024288 249 CHFAHGQSGIL 259 (269)
Q Consensus 249 C~FaHg~~e~~ 259 (269)
|.|||..++|+
T Consensus 285 CfFAH~~eqLR 295 (528)
T KOG1595|consen 285 CFFAHSPEQLR 295 (528)
T ss_pred EeeecChHHhc
Confidence 99999999985
No 4
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=99.17 E-value=2.2e-11 Score=109.37 Aligned_cols=115 Identities=26% Similarity=0.552 Sum_probs=92.1
Q ss_pred CCCCcccc--ccChhhh-cCCCCC---CCCCCCC---CCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhccccc
Q 024288 86 ITNIFFKT--RLCAKFK-HGACRN---GENCNFA---HGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMK 156 (269)
Q Consensus 86 ~~~~~yKT--~~C~~f~-~G~C~~---G~~C~Fa---H~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~ 156 (269)
.....||| ++|.-|. .|+|.+ |+.|+|+ |+++++..- ..+..|||+
T Consensus 221 ~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k-------------------------~k~~~frTe 275 (351)
T COG5063 221 QNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSK-------------------------KKKQNFRTE 275 (351)
T ss_pred ccchhhcCCHHHhhccCcCCCCcccccccccccccccccccccccc-------------------------ccccccccC
Confidence 44468899 9999997 899999 9999999 999887421 123478999
Q ss_pred ccccccCCCCCCCCCCCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 024288 157 LCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCI 236 (269)
Q Consensus 157 ~Ck~f~~~g~C~~G~~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~ 236 (269)
.|++|...|.|+||.+|.|.|.+.+.+... ++. ...++...|.
T Consensus 276 Pcinwe~sGyc~yg~Rc~F~hgd~~~ie~~----~~~---------------------------------~~~y~~~~cr 318 (351)
T COG5063 276 PCINWEKSGYCPYGLRCCFKHGDDSDIEMY----EEA---------------------------------SLGYLDGPCR 318 (351)
T ss_pred CccchhhcccCccccccccccCChhhcccc----ccc---------------------------------cccccccccc
Confidence 999999999999999999999987754421 110 1245566799
Q ss_pred cc-ccCcCCCCCCCccccCCccccccC
Q 024288 237 KW-TQGQCPFGEKCHFAHGQSGILCCL 262 (269)
Q Consensus 237 ~f-~~G~C~~G~~C~FaHg~~e~~~~~ 262 (269)
-+ ..|.|+.|-.|.+.|...-+..++
T Consensus 319 t~~~~g~~p~g~~~c~~~dkkn~~~s~ 345 (351)
T COG5063 319 TRAKGGAFPSGGAVCKSFDKKNLDFSV 345 (351)
T ss_pred cccccCccCCCCchhhccccchhhhhh
Confidence 99 889999999999999988777665
No 5
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.13 E-value=3.3e-11 Score=111.12 Aligned_cols=112 Identities=30% Similarity=0.595 Sum_probs=82.2
Q ss_pred ccccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC
Q 024288 90 FFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY 169 (269)
Q Consensus 90 ~yKT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~ 169 (269)
..++++|++|+.|.|+.||.|.|+|.. ++. |+..|.+|...|.|..
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe~-~~~---------------------------------k~rec~ff~~~g~c~~ 119 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHEY-DLT---------------------------------KMRECKFFSLFGECTN 119 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhhh-hhc---------------------------------cccccccccccccccc
Confidence 668999999999999999999999987 442 3458999999999999
Q ss_pred CCCCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCcCCCCCC-
Q 024288 170 GDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEK- 248 (269)
Q Consensus 170 G~~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~~f~~G~C~~G~~- 248 (269)
+..|.|.|.++......+..+. .|.... . .......++..+|..|..|.|+.|.+
T Consensus 120 ~~~c~y~h~dpqt~~k~c~~~~------~g~c~~-----------------g-~~c~~~h~~~~~c~~y~~gfC~~g~q~ 175 (325)
T KOG1040|consen 120 GKDCPYLHGDPQTAIKKCKWYK------EGFCRG-----------------G-PSCKKRHERKVLCPPYNAGFCPKGPQR 175 (325)
T ss_pred ccCCcccCCChhhhhhccchhh------hccCCC-----------------c-chhhhhhhcccCCCchhhhhccCCCCc
Confidence 9999999998532211111111 111100 0 02233456668999999999999988
Q ss_pred CccccCCcccc
Q 024288 249 CHFAHGQSGIL 259 (269)
Q Consensus 249 C~FaHg~~e~~ 259 (269)
|.+.|+...+.
T Consensus 176 c~~~hp~~~~~ 186 (325)
T KOG1040|consen 176 CDMLHPEFQQP 186 (325)
T ss_pred ccccCCCCCCC
Confidence 99999887654
No 6
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=99.01 E-value=1.1e-09 Score=98.58 Aligned_cols=76 Identities=33% Similarity=0.776 Sum_probs=60.7
Q ss_pred hhhcccc--cccccccCCCCCCC---CCCCccC---CCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 024288 149 QKIIHKM--KLCKKFYNGEECPY---GDRCNFL---HEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPV 220 (269)
Q Consensus 149 ~~~~~Kt--~~Ck~f~~~g~C~~---G~~C~f~---H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~ 220 (269)
...+|++ .+|..|...|.|++ |..|.|+ |+.-+. ..
T Consensus 222 n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l-~~----------------------------------- 265 (351)
T COG5063 222 NKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNEL-KS----------------------------------- 265 (351)
T ss_pred cchhhcCCHHHhhccCcCCCCccccccccccccccccccccc-cc-----------------------------------
Confidence 4477888 89999999999999 9999999 884331 00
Q ss_pred CCCCCCCCCccccccccc-ccCcCCCCCCCccccCCccccccCc
Q 024288 221 GSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSGILCCLD 263 (269)
Q Consensus 221 ~~~~~~~~~~kt~lC~~f-~~G~C~~G~~C~FaHg~~e~~~~~~ 263 (269)
......++|..|+.| ..|.|++|.+|.|.||+.++.-..+
T Consensus 266 ---k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~ 306 (351)
T COG5063 266 ---KKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYE 306 (351)
T ss_pred ---cccccccccCCccchhhcccCccccccccccCChhhccccc
Confidence 112357899999999 9999999999999999988754433
No 7
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.76 E-value=6.9e-09 Score=99.86 Aligned_cols=99 Identities=21% Similarity=0.462 Sum_probs=79.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCc
Q 024288 47 QQPPFKRPRNYEDNESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNW 126 (269)
Q Consensus 47 ~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yKT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~ 126 (269)
..-.||..|......+.+ +..++-.+..-++++.-.+-.|.-+.|..|++|.|+.||.|.|+|++-|.-.-|
T Consensus 195 rMy~fKir~C~R~~shDw-----teCPf~HpgEkARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHgvfEcwLHP--- 266 (528)
T KOG1595|consen 195 RMYSFKIRRCSRPRSHDW-----TECPFAHPGEKARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHGVFECWLHP--- 266 (528)
T ss_pred EEEeeeecccCCccCCCc-----ccCCccCCCcccccCCcccccccCccCcccccCCCCCCCccccccceehhhcCH---
Confidence 356799988887766777 455565556667777778888999999999999999999999999998874432
Q ss_pred ccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCCCCccCCCCcc
Q 024288 127 QELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPA 181 (269)
Q Consensus 127 ~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~G~~C~f~H~~~~ 181 (269)
.+|||++||. .+.|++ .-|.|+|...+
T Consensus 267 ------------------------a~YRT~~CkD---g~~C~R-rvCfFAH~~eq 293 (528)
T KOG1595|consen 267 ------------------------ARYRTRKCKD---GGYCPR-RVCFFAHSPEQ 293 (528)
T ss_pred ------------------------HHhccccccC---CCCCcc-ceEeeecChHH
Confidence 3799999994 488998 89999999543
No 8
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.58 E-value=1.5e-08 Score=60.01 Aligned_cols=25 Identities=52% Similarity=1.185 Sum_probs=20.5
Q ss_pred cccccChhhh-cCCCCCCCCCCCCCC
Q 024288 91 FKTRLCAKFK-HGACRNGENCNFAHG 115 (269)
Q Consensus 91 yKT~~C~~f~-~G~C~~G~~C~FaH~ 115 (269)
|||++|++|+ .|.|++|++|+|+|+
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred CccccChhhccCCccCCCCCcCccCC
Confidence 6899999998 599999999999997
No 9
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=98.57 E-value=6.5e-09 Score=93.22 Aligned_cols=108 Identities=28% Similarity=0.583 Sum_probs=71.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCC
Q 024288 55 RNYEDNESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGR 134 (269)
Q Consensus 55 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yKT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r 134 (269)
|..+..+.+.++-| ..+..+..+.+ |+++|.+|.+|+|..|+.|+|+|++...|..+. .+++..+|
T Consensus 66 ~e~~~~e~~~lfkp-~~qkv~~gvDP-----------KSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK--~dly~d~r 131 (343)
T KOG1763|consen 66 KEEKQRELNELFKP-ADQKVPKGVDP-----------KSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEK--IDLYPDTR 131 (343)
T ss_pred chHHHHHHHHhccc-cccccccCCCc-----------hHHHHHHHhccCCCCCCcccccchHHHhhhccc--hhccccch
Confidence 33333334455555 66666666666 999999999999999999999999987765543 34555444
Q ss_pred CcccCCCCCCCCcchh--------hccc--c-cccccccC------CCC---CCCCC-CCccCCCCcccc
Q 024288 135 AEEDRSSGGNWDDDQK--------IIHK--M-KLCKKFYN------GEE---CPYGD-RCNFLHEDPAKF 183 (269)
Q Consensus 135 ~~~~~~~~~~~~~~~~--------~~~K--t-~~Ck~f~~------~g~---C~~G~-~C~f~H~~~~~~ 183 (269)
.+ .|+++.- ...+ | .+|++|.. .|+ ||+|. .|.|.|..+..+
T Consensus 132 de-------mWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE~~kYGWfW~CPnGg~~C~YrHaLP~Gy 194 (343)
T KOG1763|consen 132 DE-------MWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVENGKYGWFWECPNGGDKCIYRHALPEGY 194 (343)
T ss_pred hh-------hhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCccceeECCCCCCeeeeeecCCcch
Confidence 43 3654310 0111 1 47987754 232 99985 899999988763
No 10
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.50 E-value=2.3e-08 Score=59.21 Aligned_cols=26 Identities=62% Similarity=1.372 Sum_probs=20.6
Q ss_pred ccccccccc-ccCcCCCCCCCccccCC
Q 024288 230 WKTKLCIKW-TQGQCPFGEKCHFAHGQ 255 (269)
Q Consensus 230 ~kt~lC~~f-~~G~C~~G~~C~FaHg~ 255 (269)
+|+++|++| ..|.|++|++|+|+|+.
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 578899999 77999999999999974
No 11
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=98.49 E-value=7e-07 Score=81.05 Aligned_cols=60 Identities=27% Similarity=0.630 Sum_probs=51.6
Q ss_pred ccccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC
Q 024288 90 FFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY 169 (269)
Q Consensus 90 ~yKT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~ 169 (269)
.+..++|++|..|.|+.|..|.|+|+..-++. -+..|+.|...|.|..
T Consensus 101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s--------------------------------~~~~c~~Fs~~G~cs~ 148 (285)
T COG5084 101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRSS--------------------------------QGPPCRSFSLKGSCSS 148 (285)
T ss_pred ccCCcccchhccccCcCCCccccccCCCcccc--------------------------------cCCCcccccccceecc
Confidence 57889999999999999999999998875431 1247998989999999
Q ss_pred CCCCccCCCCcc
Q 024288 170 GDRCNFLHEDPA 181 (269)
Q Consensus 170 G~~C~f~H~~~~ 181 (269)
|..|.+.|.++.
T Consensus 149 g~~c~~~h~dp~ 160 (285)
T COG5084 149 GPSCGYSHIDPD 160 (285)
T ss_pred CCCCCccccCcc
Confidence 999999999854
No 12
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=98.34 E-value=9.5e-08 Score=83.48 Aligned_cols=84 Identities=35% Similarity=0.771 Sum_probs=58.6
Q ss_pred ccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCccc-CCCC-CCCCcchhhcccccccccccC---C--
Q 024288 92 KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEED-RSSG-GNWDDDQKIIHKMKLCKKFYN---G-- 164 (269)
Q Consensus 92 KT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~-~~~~-~~~~~~~~~~~Kt~~Ck~f~~---~-- 164 (269)
|+++|..|..++|..|+.|+|+|+.++.|.... .+|++.+|+... .++. .-|. --.++|++|.. .
T Consensus 84 K~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK--~DLYsDvRd~~ed~pl~krP~i------ntd~VCkffieA~e~Gk 155 (299)
T COG5252 84 KTVVCALFLNKTCAKGDACKFAHGKEEARKTEK--PDLYSDVRDKEEDVPLGKRPWI------NTDRVCKFFIEAMESGK 155 (299)
T ss_pred hhHHHHHhccCccccCchhhhhcchHHHhhhcc--cchhhhhhhhhccCCcccCCCC------ChhHHHHHHHHHHhcCC
Confidence 999999999999999999999999998876532 345555554432 2221 1111 11257987754 2
Q ss_pred -C---CCCCC-CCCccCCCCcccc
Q 024288 165 -E---ECPYG-DRCNFLHEDPAKF 183 (269)
Q Consensus 165 -g---~C~~G-~~C~f~H~~~~~~ 183 (269)
| .||+| .+|.|.|..++.+
T Consensus 156 Ygw~W~CPng~~~C~y~H~Lp~Gy 179 (299)
T COG5252 156 YGWGWTCPNGNMRCSYIHKLPDGY 179 (299)
T ss_pred ccceeeCCCCCceeeeeeccCccc
Confidence 2 29998 6899999988753
No 13
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=98.24 E-value=4.8e-07 Score=78.94 Aligned_cols=108 Identities=23% Similarity=0.523 Sum_probs=66.9
Q ss_pred cccChhhh-cCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCC
Q 024288 93 TRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGD 171 (269)
Q Consensus 93 T~~C~~f~-~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~G~ 171 (269)
.+.|++|. .|.|-.|..|+|.|.... | .+|.+|.. |.|...+
T Consensus 206 avycryynangicgkgaacrfvheptr-----------------------------------k-ticpkfln-grcnkae 248 (377)
T KOG1492|consen 206 AVYCRYYNANGICGKGAACRFVHEPTR-----------------------------------K-TICPKFLN-GRCNKAE 248 (377)
T ss_pred eeEEEEecCCCcccCCceeeeeccccc-----------------------------------c-ccChHHhc-CccCchh
Confidence 45799998 899999999999996432 1 37877754 6888888
Q ss_pred CCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc-ccCcCCCCCCCc
Q 024288 172 RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCH 250 (269)
Q Consensus 172 ~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~~f-~~G~C~~G~~C~ 250 (269)
.|.+.|+.....-+++. -+-+|...-| .+-.. +.. -.....+|..| .-|+|..|..|.
T Consensus 249 dcnlsheldprripacr------yfllgkcnnp--------ncryv------hih-ysenapicfefakygfcelgtsck 307 (377)
T KOG1492|consen 249 DCNLSHELDPRRIPACR------YFLLGKCNNP--------NCRYV------HIH-YSENAPICFEFAKYGFCELGTSCK 307 (377)
T ss_pred cCCcccccCccccchhh------hhhhccCCCC--------CceEE------EEe-ecCCCceeeeehhcceeccccccc
Confidence 88888885432212211 1112221100 00000 000 01123579999 889999999999
Q ss_pred cccCCccc
Q 024288 251 FAHGQSGI 258 (269)
Q Consensus 251 FaHg~~e~ 258 (269)
-.|-..+-
T Consensus 308 nqhilqct 315 (377)
T KOG1492|consen 308 NQHILQCT 315 (377)
T ss_pred cceeeeec
Confidence 99876653
No 14
>smart00356 ZnF_C3H1 zinc finger.
Probab=98.21 E-value=8.1e-07 Score=52.03 Aligned_cols=26 Identities=50% Similarity=1.100 Sum_probs=24.0
Q ss_pred cccccChhhhcCCCCCCCCCCCCCCC
Q 024288 91 FKTRLCAKFKHGACRNGENCNFAHGM 116 (269)
Q Consensus 91 yKT~~C~~f~~G~C~~G~~C~FaH~~ 116 (269)
+|+.+|++|.+|.|.+|+.|+|+|+.
T Consensus 2 ~k~~~C~~~~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFFKRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCccCCCCCCCCCcCCCCcC
Confidence 68899999999999999999999973
No 15
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=98.13 E-value=2e-06 Score=79.71 Aligned_cols=110 Identities=25% Similarity=0.425 Sum_probs=68.7
Q ss_pred cChhhhc--CCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCCC
Q 024288 95 LCAKFKH--GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDR 172 (269)
Q Consensus 95 ~C~~f~~--G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~G~~ 172 (269)
.|..+.. -.|.+|..|.+.|...+. ..+..+||+| ..|.|..|+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~vcK~~-l~glC~kgD~ 93 (325)
T KOG1040|consen 47 TCEFNESREKPCERGPICPKSHNDVSD--------------------------------SRGKVVCKHW-LRGLCKKGDQ 93 (325)
T ss_pred hhcccccCCCCccCCCCCccccCCccc--------------------------------cCCceeehhh-hhhhhhccCc
Confidence 4666654 579999999999976531 2345799966 5689999999
Q ss_pred CccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCcCCCCCCCccc
Q 024288 173 CNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFA 252 (269)
Q Consensus 173 C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~~f~~G~C~~G~~C~Fa 252 (269)
|.|+|+. +.. +.++...+++ +|...++-+-. .- +. ....+...|+.|..|+|+.|+.|++.
T Consensus 94 C~Flhe~-~~~-----k~rec~ff~~--------~g~c~~~~~c~--y~--h~-dpqt~~k~c~~~~~g~c~~g~~c~~~ 154 (325)
T KOG1040|consen 94 CEFLHEY-DLT-----KMRECKFFSL--------FGECTNGKDCP--YL--HG-DPQTAIKKCKWYKEGFCRGGPSCKKR 154 (325)
T ss_pred Ccchhhh-hhc-----cccccccccc--------ccccccccCCc--cc--CC-ChhhhhhccchhhhccCCCcchhhhh
Confidence 9999986 221 2233322222 12222211100 00 00 01345567998999999999999999
Q ss_pred cCCc
Q 024288 253 HGQS 256 (269)
Q Consensus 253 Hg~~ 256 (269)
|-..
T Consensus 155 h~~~ 158 (325)
T KOG1040|consen 155 HERK 158 (325)
T ss_pred hhcc
Confidence 9665
No 16
>smart00356 ZnF_C3H1 zinc finger.
Probab=98.08 E-value=2.2e-06 Score=50.11 Aligned_cols=26 Identities=46% Similarity=1.174 Sum_probs=23.3
Q ss_pred cccccccccccCcCCCCCCCccccCC
Q 024288 230 WKTKLCIKWTQGQCPFGEKCHFAHGQ 255 (269)
Q Consensus 230 ~kt~lC~~f~~G~C~~G~~C~FaHg~ 255 (269)
+|+.+|.+|.+|.|.+|++|+|+|+.
T Consensus 2 ~k~~~C~~~~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFFKRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCccCCCCCCCCCcCCCCcC
Confidence 46778999999999999999999973
No 17
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=98.07 E-value=2.3e-06 Score=74.67 Aligned_cols=103 Identities=22% Similarity=0.566 Sum_probs=67.3
Q ss_pred ccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCC
Q 024288 92 KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGD 171 (269)
Q Consensus 92 KT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~G~ 171 (269)
+..+|.+|+.|.|...+.|...|.+...|.| .|+ |+.-|.|.. .
T Consensus 232 rkticpkflngrcnkaedcnlsheldprrip----------------------------------acr-yfllgkcnn-p 275 (377)
T KOG1492|consen 232 RKTICPKFLNGRCNKAEDCNLSHELDPRRIP----------------------------------ACR-YFLLGKCNN-P 275 (377)
T ss_pred ccccChHHhcCccCchhcCCcccccCccccc----------------------------------hhh-hhhhccCCC-C
Confidence 4568999999999999999999999877654 698 445678985 7
Q ss_pred CCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc-ccCcCCCCCCCc
Q 024288 172 RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCH 250 (269)
Q Consensus 172 ~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~~f-~~G~C~~G~~C~ 250 (269)
+|+|.|..-+.--+-+-.+..-.-..+|++. .....-.|..| +-|.|.. ..|.
T Consensus 276 ncryvhihysenapicfefakygfcelgtsc-------------------------knqhilqctdyamfgscnn-pqcs 329 (377)
T KOG1492|consen 276 NCRYVHIHYSENAPICFEFAKYGFCELGTSC-------------------------KNQHILQCTDYAMFGSCNN-PQCS 329 (377)
T ss_pred CceEEEEeecCCCceeeeehhcceecccccc-------------------------ccceeeeecchhhhcCCCC-Ccce
Confidence 9999987533211111111110011111110 11122359999 8999988 8999
Q ss_pred cccCCc
Q 024288 251 FAHGQS 256 (269)
Q Consensus 251 FaHg~~ 256 (269)
..||.-
T Consensus 330 lyhgav 335 (377)
T KOG1492|consen 330 LYHGAV 335 (377)
T ss_pred eeccee
Confidence 999854
No 18
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=98.01 E-value=5.1e-06 Score=75.99 Aligned_cols=62 Identities=21% Similarity=0.595 Sum_probs=46.9
Q ss_pred ccccccChhhhcCCCCCCCC-CCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCC
Q 024288 90 FFKTRLCAKFKHGACRNGEN-CNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECP 168 (269)
Q Consensus 90 ~yKT~~C~~f~~G~C~~G~~-C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~ 168 (269)
+-.-++|+.|+.|+|++|+. |+|+|......+. +.+...|..| .+|.|.
T Consensus 34 wl~~eVCReF~rn~C~R~d~~CkfaHP~~~~~V~-----------------------------~g~v~aC~Ds-~kgrCs 83 (331)
T KOG2494|consen 34 WLTLEVCREFLRNTCSRGDRECKFAHPPKNCQVS-----------------------------NGRVIACFDS-QKGRCS 83 (331)
T ss_pred hhHHHHHHHHHhccccCCCccccccCCCCCCCcc-----------------------------CCeEEEEecc-ccCccC
Confidence 33558999999999999999 9999987644221 2345689755 567999
Q ss_pred CCCCCccCCCCccc
Q 024288 169 YGDRCNFLHEDPAK 182 (269)
Q Consensus 169 ~G~~C~f~H~~~~~ 182 (269)
+ ++|+|+|...+.
T Consensus 84 R-~nCkylHpp~hl 96 (331)
T KOG2494|consen 84 R-ENCKYLHPPQHL 96 (331)
T ss_pred c-ccceecCCChhh
Confidence 6 789999996543
No 19
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.67 E-value=1.6e-05 Score=72.77 Aligned_cols=63 Identities=25% Similarity=0.621 Sum_probs=47.4
Q ss_pred ccccccccCCCCCCCCCC-CccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 024288 155 MKLCKKFYNGEECPYGDR-CNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTK 233 (269)
Q Consensus 155 t~~Ck~f~~~g~C~~G~~-C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~ 233 (269)
.++|+.|. .+.|.+|++ |+|+|.... ... ..-+-.
T Consensus 37 ~eVCReF~-rn~C~R~d~~CkfaHP~~~-~~V------------------------------------------~~g~v~ 72 (331)
T KOG2494|consen 37 LEVCREFL-RNTCSRGDRECKFAHPPKN-CQV------------------------------------------SNGRVI 72 (331)
T ss_pred HHHHHHHH-hccccCCCccccccCCCCC-CCc------------------------------------------cCCeEE
Confidence 36899886 479999999 999998642 100 112234
Q ss_pred cccccccCcCCCCCCCccccCCccccccC
Q 024288 234 LCIKWTQGQCPFGEKCHFAHGQSGILCCL 262 (269)
Q Consensus 234 lC~~f~~G~C~~G~~C~FaHg~~e~~~~~ 262 (269)
.|.++++|.|.+ ++|+|+|+...+.-.+
T Consensus 73 aC~Ds~kgrCsR-~nCkylHpp~hlkdql 100 (331)
T KOG2494|consen 73 ACFDSQKGRCSR-ENCKYLHPPQHLKDQL 100 (331)
T ss_pred EEeccccCccCc-ccceecCCChhhhhhh
Confidence 699999999999 8899999998876544
No 20
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=97.31 E-value=9.7e-05 Score=71.09 Aligned_cols=65 Identities=32% Similarity=0.724 Sum_probs=45.7
Q ss_pred cccccccccCC--CCCCCCCCCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024288 154 KMKLCKKFYNG--EECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK 231 (269)
Q Consensus 154 Kt~~Ck~f~~~--g~C~~G~~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~k 231 (269)
+..+|.....+ ..|.||++|+|.|+....+... ++ ...
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK---------------~~-------------------------Dig 114 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATK---------------AP-------------------------DIG 114 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhcc---------------Cc-------------------------ccC
Confidence 34689877776 5799999999999964422111 00 000
Q ss_pred ccccccc-ccCcCCCCCCCcc--ccCCcccc
Q 024288 232 TKLCIKW-TQGQCPFGEKCHF--AHGQSGIL 259 (269)
Q Consensus 232 t~lC~~f-~~G~C~~G~~C~F--aHg~~e~~ 259 (269)
.-|..| ..|.|++|-+||| +|-+.+-.
T Consensus 115 -~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~ 144 (614)
T KOG2333|consen 115 -PSCPVFESLGFCPYGFKCRFLGAHLDIEGN 144 (614)
T ss_pred -CccceeeccccCCccceeehhhcccCcccc
Confidence 249999 9999999999999 66555543
No 21
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.00025 Score=67.89 Aligned_cols=80 Identities=25% Similarity=0.514 Sum_probs=60.2
Q ss_pred ccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCCCC
Q 024288 94 RLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRC 173 (269)
Q Consensus 94 ~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~G~~C 173 (269)
..|.+|+..+|++++.|.|.|...-+. | ...|.+|...-.|. +.|
T Consensus 4 ~dcyff~ys~cKk~d~c~~rh~E~al~-----n----------------------------~t~C~~w~~~~~C~--k~C 48 (667)
T KOG4791|consen 4 EDCYFFFYSTCKKGDSCPFRHCEAALG-----N----------------------------ETVCTLWQEGRCCR--KVC 48 (667)
T ss_pred ccchhhhhhhhhccCcCcchhhHHHhc-----C----------------------------cchhhhhhhcCccc--ccc
Confidence 358889888999999999999766441 1 14799887765566 489
Q ss_pred ccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCc-CCCCCCCccc
Q 024288 174 NFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQ-CPFGEKCHFA 252 (269)
Q Consensus 174 ~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~~f~~G~-C~~G~~C~Fa 252 (269)
.|.|...... ....+|.+|.++. |.. ++|-|.
T Consensus 49 ~YRHSe~~~k----------------------------------------------r~e~~CYwe~~p~gC~k-~~CgfR 81 (667)
T KOG4791|consen 49 RYRHSEIDKK----------------------------------------------RSEIPCYWENQPTGCQK-LNCGFR 81 (667)
T ss_pred cchhhHHhhh----------------------------------------------cCcccceeecCCCccCC-Cccccc
Confidence 9999975421 1335798887777 998 999999
Q ss_pred cCC
Q 024288 253 HGQ 255 (269)
Q Consensus 253 Hg~ 255 (269)
|..
T Consensus 82 H~~ 84 (667)
T KOG4791|consen 82 HNR 84 (667)
T ss_pred cCC
Confidence 943
No 22
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=96.84 E-value=0.00046 Score=65.02 Aligned_cols=39 Identities=38% Similarity=0.778 Sum_probs=33.7
Q ss_pred CCCcccccccccccCcCCCCCCCccccCCccccccCccc
Q 024288 227 PVYWKTKLCIKWTQGQCPFGEKCHFAHGQSGILCCLDHY 265 (269)
Q Consensus 227 ~~~~kt~lC~~f~~G~C~~G~~C~FaHg~~e~~~~~~~~ 265 (269)
|......+|+||..|.|+||++|+|.||..-..-+|.+|
T Consensus 135 PTh~sMkpC~ffLeg~CRF~enCRfSHG~~V~lsslr~y 173 (486)
T KOG2185|consen 135 PTHESMKPCKFFLEGRCRFGENCRFSHGLDVPLSSLRNY 173 (486)
T ss_pred CcchhhccchHhhccccccCcccccccCcccchhhcccC
Confidence 345566789999999999999999999998888888777
No 23
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=96.82 E-value=0.0005 Score=66.32 Aligned_cols=63 Identities=33% Similarity=0.674 Sum_probs=46.7
Q ss_pred ccccChhhhcC---CCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCC
Q 024288 92 KTRLCAKFKHG---ACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECP 168 (269)
Q Consensus 92 KT~~C~~f~~G---~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~ 168 (269)
+..+|.....| .|.+|++|+|.|+++-.-..- .. .-...|..|...|.|+
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK--~~-------------------------Dig~~Cp~f~s~G~Cp 127 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATK--AP-------------------------DIGPSCPVFESLGFCP 127 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhcc--Cc-------------------------ccCCccceeeccccCC
Confidence 56799998865 799999999999988542110 00 0013699999999999
Q ss_pred CCCCCcc--CCCCcc
Q 024288 169 YGDRCNF--LHEDPA 181 (269)
Q Consensus 169 ~G~~C~f--~H~~~~ 181 (269)
+|-.|+| +|.+.+
T Consensus 128 ~G~~CRFl~aHld~~ 142 (614)
T KOG2333|consen 128 YGFKCRFLGAHLDIE 142 (614)
T ss_pred ccceeehhhcccCcc
Confidence 9999999 565443
No 24
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=96.71 E-value=0.0028 Score=57.78 Aligned_cols=54 Identities=28% Similarity=0.632 Sum_probs=42.1
Q ss_pred cccChhh-hcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccC--CCCCCC
Q 024288 93 TRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYN--GEECPY 169 (269)
Q Consensus 93 T~~C~~f-~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~--~g~C~~ 169 (269)
...|+.| ..|.|..|..|.+.|.+...+. ..|..|.. .+.|++
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~~----------------------------------~~~~~~~~~~~~f~p~ 179 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHIDPDSFA----------------------------------GNCDQYSGATYGFCPL 179 (285)
T ss_pred CCCcccccccceeccCCCCCccccCccccc----------------------------------ccccccCcccccccCC
Confidence 5679999 5899999999999998732211 25664442 678999
Q ss_pred CCCCccCCCCc
Q 024288 170 GDRCNFLHEDP 180 (269)
Q Consensus 170 G~~C~f~H~~~ 180 (269)
|..|.+.|...
T Consensus 180 g~~c~~~H~~~ 190 (285)
T COG5084 180 GASCKFSHTLK 190 (285)
T ss_pred CCccccccccc
Confidence 99999999964
No 25
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=96.31 E-value=0.0026 Score=34.38 Aligned_cols=19 Identities=32% Similarity=0.738 Sum_probs=16.1
Q ss_pred cccccccCcCCCCCCCccccC
Q 024288 234 LCIKWTQGQCPFGEKCHFAHG 254 (269)
Q Consensus 234 lC~~f~~G~C~~G~~C~FaHg 254 (269)
+|++|.. |++|++|.|+|+
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 4887844 999999999995
No 26
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.95 E-value=0.0034 Score=59.32 Aligned_cols=26 Identities=46% Similarity=1.077 Sum_probs=23.4
Q ss_pred ccccChhhhcCCCCCCCCCCCCCCCC
Q 024288 92 KTRLCAKFKHGACRNGENCNFAHGME 117 (269)
Q Consensus 92 KT~~C~~f~~G~C~~G~~C~FaH~~~ 117 (269)
.-.+|.+|+.|.|+||++|+|+|+..
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGLD 164 (486)
T ss_pred hhccchHhhccccccCcccccccCcc
Confidence 34689999999999999999999865
No 27
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.87 E-value=0.0051 Score=33.19 Aligned_cols=19 Identities=42% Similarity=0.915 Sum_probs=15.9
Q ss_pred cChhhhcCCCCCCCCCCCCCC
Q 024288 95 LCAKFKHGACRNGENCNFAHG 115 (269)
Q Consensus 95 ~C~~f~~G~C~~G~~C~FaH~ 115 (269)
+|++|.. |++|+.|.|+|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 4886655 999999999995
No 28
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.024 Score=54.73 Aligned_cols=110 Identities=16% Similarity=0.212 Sum_probs=63.7
Q ss_pred ccChhhhcC-CCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCCC
Q 024288 94 RLCAKFKHG-ACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDR 172 (269)
Q Consensus 94 ~~C~~f~~G-~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~G~~ 172 (269)
..|.+|+.+ .|+. -|.|.|..-.+.+ ....|-.+.+...|.. ++
T Consensus 33 t~C~~w~~~~~C~k--~C~YRHSe~~~kr--------------------------------~e~~CYwe~~p~gC~k-~~ 77 (667)
T KOG4791|consen 33 TVCTLWQEGRCCRK--VCRYRHSEIDKKR--------------------------------SEIPCYWENQPTGCQK-LN 77 (667)
T ss_pred chhhhhhhcCcccc--cccchhhHHhhhc--------------------------------CcccceeecCCCccCC-Cc
Confidence 469999966 4565 8999998765521 1247864444444884 89
Q ss_pred CccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCcCCCCCCCccc
Q 024288 173 CNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFA 252 (269)
Q Consensus 173 C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~~f~~G~C~~G~~C~Fa 252 (269)
|-|.|..+. +...-.-.. +..++|..++.-+........-...|-+|++|.|-.||-|-|+
T Consensus 78 CgfRH~~pP-Lkg~l~~~p------------------~~pe~ev~~~~~SAq~~sV~~~p~P~l~~~K~~e~~~D~~s~L 138 (667)
T KOG4791|consen 78 CGFRHNRPP-LKGVLPTVP------------------ESPEEEVKASQLSAQQNSVQSNPSPQLRSVKKVESSEDVPSPL 138 (667)
T ss_pred cccccCCCc-hhhhccCCC------------------CCcccccccccccCCCcccccCCchHHHHhhhhhhhccccccC
Confidence 999997532 111100000 0111222221111111122233346888999999999999999
Q ss_pred cCCcc
Q 024288 253 HGQSG 257 (269)
Q Consensus 253 Hg~~e 257 (269)
|....
T Consensus 139 h~P~A 143 (667)
T KOG4791|consen 139 HPPVA 143 (667)
T ss_pred CCCcc
Confidence 96633
No 29
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.68 E-value=0.012 Score=50.74 Aligned_cols=29 Identities=28% Similarity=0.848 Sum_probs=24.2
Q ss_pred cccccccc-ccCcCCCCCCCccccCCcccc
Q 024288 231 KTKLCIKW-TQGQCPFGEKCHFAHGQSGIL 259 (269)
Q Consensus 231 kt~lC~~f-~~G~C~~G~~C~FaHg~~e~~ 259 (269)
....|+.| .+|+|.||+.|.|+|......
T Consensus 140 qpdVCKdyk~TGYCGYGDsCKflH~R~D~K 169 (259)
T COG5152 140 QPDVCKDYKETGYCGYGDSCKFLHDRSDFK 169 (259)
T ss_pred CcccccchhhcccccCCchhhhhhhhhhhh
Confidence 33469999 999999999999999876443
No 30
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=94.17 E-value=0.11 Score=52.17 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=13.6
Q ss_pred cChhhhcCCCCCCCCCCCCCCCCC
Q 024288 95 LCAKFKHGACRNGENCNFAHGMED 118 (269)
Q Consensus 95 ~C~~f~~G~C~~G~~C~FaH~~~e 118 (269)
.|+++.. |. ++.|.|+|....
T Consensus 546 ~Cky~~~--Ct-~a~Ce~~HPtaa 566 (681)
T KOG3702|consen 546 RCKYGPA--CT-SAECEFAHPTAA 566 (681)
T ss_pred cccCCCc--CC-chhhhhcCCcch
Confidence 4666654 55 677888886543
No 31
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.062 Score=50.50 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=27.2
Q ss_pred ccccccccccCcCCCCCCCccccCCccccccC
Q 024288 231 KTKLCIKWTQGQCPFGEKCHFAHGQSGILCCL 262 (269)
Q Consensus 231 kt~lC~~f~~G~C~~G~~C~FaHg~~e~~~~~ 262 (269)
++++|.+-..|.|.+|..|.++|+.....+++
T Consensus 92 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l 123 (344)
T KOG1039|consen 92 STQENPYSNHGQCRFGNGDVTLNGNNPESCGL 123 (344)
T ss_pred ccccCccccccccccCCccccccccccccccc
Confidence 45788888899999999999999887777765
No 32
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=93.96 E-value=0.02 Score=49.38 Aligned_cols=31 Identities=32% Similarity=0.786 Sum_probs=26.7
Q ss_pred CccccccChhhh-cCCCCCCCCCCCCCCCCCc
Q 024288 89 IFFKTRLCAKFK-HGACRNGENCNFAHGMEDL 119 (269)
Q Consensus 89 ~~yKT~~C~~f~-~G~C~~G~~C~FaH~~~e~ 119 (269)
+-|.-.+|+.|. +|.|-||+.|+|.|..++.
T Consensus 137 iD~qpdVCKdyk~TGYCGYGDsCKflH~R~D~ 168 (259)
T COG5152 137 IDTQPDVCKDYKETGYCGYGDSCKFLHDRSDF 168 (259)
T ss_pred eecCcccccchhhcccccCCchhhhhhhhhhh
Confidence 345667999998 8999999999999998765
No 33
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=92.51 E-value=0.044 Score=49.92 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=29.7
Q ss_pred CCcccccccccccCcCCCCCCCccccCCccccccC
Q 024288 228 VYWKTKLCIKWTQGQCPFGEKCHFAHGQSGILCCL 262 (269)
Q Consensus 228 ~~~kt~lC~~f~~G~C~~G~~C~FaHg~~e~~~~~ 262 (269)
...|+.+|.+|..|.|..|+.|.|+|+....+..-
T Consensus 88 vDPKSvvCafFk~g~C~KG~kCKFsHdl~~~~k~e 122 (343)
T KOG1763|consen 88 VDPKSVVCAFFKQGTCTKGDKCKFSHDLAVERKKE 122 (343)
T ss_pred CCchHHHHHHHhccCCCCCCcccccchHHHhhhcc
Confidence 35578899999999999999999999988766443
No 34
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.03 E-value=0.051 Score=49.59 Aligned_cols=29 Identities=28% Similarity=0.911 Sum_probs=24.7
Q ss_pred ccccccccc-ccCcCCCCCCCccccCCccc
Q 024288 230 WKTKLCIKW-TQGQCPFGEKCHFAHGQSGI 258 (269)
Q Consensus 230 ~kt~lC~~f-~~G~C~~G~~C~FaHg~~e~ 258 (269)
+..-+|+.| .+|+|.+|+.|.|+|...+.
T Consensus 184 ~qpDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 184 YQPDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred cCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence 334589999 99999999999999987654
No 35
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.17 E-value=0.14 Score=48.17 Aligned_cols=24 Identities=25% Similarity=0.917 Sum_probs=23.0
Q ss_pred ccChhhhcCCCCCCCCCCCCCCCC
Q 024288 94 RLCAKFKHGACRNGENCNFAHGME 117 (269)
Q Consensus 94 ~~C~~f~~G~C~~G~~C~FaH~~~ 117 (269)
.||++|+.|.|++|+.|+|.|...
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhcccccccccceeeeeccCc
Confidence 799999999999999999999887
No 36
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.43 E-value=0.16 Score=46.42 Aligned_cols=32 Identities=31% Similarity=0.830 Sum_probs=27.5
Q ss_pred CCccccccChhhh-cCCCCCCCCCCCCCCCCCc
Q 024288 88 NIFFKTRLCAKFK-HGACRNGENCNFAHGMEDL 119 (269)
Q Consensus 88 ~~~yKT~~C~~f~-~G~C~~G~~C~FaH~~~e~ 119 (269)
.+-|--.+|+.|. +|.|-||+.|+|.|...+.
T Consensus 181 ~~d~qpDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 181 RIDYQPDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred eeecCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence 3446677999998 9999999999999998765
No 37
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=86.20 E-value=0.45 Score=26.91 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=16.9
Q ss_pred cccccccC-cCCCCCCCccccC
Q 024288 234 LCIKWTQG-QCPFGEKCHFAHG 254 (269)
Q Consensus 234 lC~~f~~G-~C~~G~~C~FaHg 254 (269)
+|.|-.+| .|.. +.|.|.|-
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QHf 22 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQHF 22 (23)
T ss_pred CCccccCCCeeCC-CCCCcccc
Confidence 79988666 9987 89999993
No 38
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=76.27 E-value=1.2 Score=40.13 Aligned_cols=27 Identities=33% Similarity=0.845 Sum_probs=24.4
Q ss_pred ccccccChhhhcCCCCCCCCCCCCCCC
Q 024288 90 FFKTRLCAKFKHGACRNGENCNFAHGM 116 (269)
Q Consensus 90 ~yKT~~C~~f~~G~C~~G~~C~FaH~~ 116 (269)
.++..+|..|..+.|.+|..|.|.|..
T Consensus 149 ~~rea~C~~~e~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 149 DFREAICGQFERTECSRGGACNFMHVK 175 (260)
T ss_pred chhhhhhcccccccCCCCCcCcchhhh
Confidence 468889999998899999999999965
No 39
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=71.50 E-value=0.99 Score=40.15 Aligned_cols=32 Identities=31% Similarity=0.575 Sum_probs=27.4
Q ss_pred CcccccccccccCcCCCCCCCccccCCccccc
Q 024288 229 YWKTKLCIKWTQGQCPFGEKCHFAHGQSGILC 260 (269)
Q Consensus 229 ~~kt~lC~~f~~G~C~~G~~C~FaHg~~e~~~ 260 (269)
..|+..|..|..+.|..|+.|.|+|+.++-+.
T Consensus 82 dpK~~vcalF~~~~c~kg~~ckF~h~~ee~r~ 113 (299)
T COG5252 82 DPKTVVCALFLNKTCAKGDACKFAHGKEEARK 113 (299)
T ss_pred CchhHHHHHhccCccccCchhhhhcchHHHhh
Confidence 45778899999999999999999999766553
No 40
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=71.33 E-value=1.8 Score=40.59 Aligned_cols=24 Identities=25% Similarity=0.843 Sum_probs=21.9
Q ss_pred ccccccccCcCCCCCCCccccCCc
Q 024288 233 KLCIKWTQGQCPFGEKCHFAHGQS 256 (269)
Q Consensus 233 ~lC~~f~~G~C~~G~~C~FaHg~~ 256 (269)
-+|.+|..|.|++|+.|.|.|...
T Consensus 162 ~Icsf~v~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 162 HICSFFVKGECKRGAECPYRHEKP 185 (377)
T ss_pred ccccceeeccccccccccccccCC
Confidence 379999999999999999999776
No 41
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=57.05 E-value=5.5 Score=35.87 Aligned_cols=28 Identities=21% Similarity=0.681 Sum_probs=25.1
Q ss_pred CCcccccccccccCcCCCCCCCccccCC
Q 024288 228 VYWKTKLCIKWTQGQCPFGEKCHFAHGQ 255 (269)
Q Consensus 228 ~~~kt~lC~~f~~G~C~~G~~C~FaHg~ 255 (269)
..++...|..|..+.|.+|..|-|.|..
T Consensus 148 T~~rea~C~~~e~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 148 TDFREAICGQFERTECSRGGACNFMHVK 175 (260)
T ss_pred CchhhhhhcccccccCCCCCcCcchhhh
Confidence 5788899999977799999999999965
No 42
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=56.20 E-value=5.2 Score=37.60 Aligned_cols=25 Identities=28% Similarity=0.875 Sum_probs=22.7
Q ss_pred cccChhhhcCCCCCCCCCCCCCCCC
Q 024288 93 TRLCAKFKHGACRNGENCNFAHGME 117 (269)
Q Consensus 93 T~~C~~f~~G~C~~G~~C~FaH~~~ 117 (269)
--||.+|..|.|++|+.|.|.|...
T Consensus 161 p~Icsf~v~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 161 PHICSFFVKGECKRGAECPYRHEKP 185 (377)
T ss_pred CccccceeeccccccccccccccCC
Confidence 3589999999999999999999766
No 43
>PHA03096 p28-like protein; Provisional
Probab=46.22 E-value=5.5 Score=36.62 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=19.8
Q ss_pred CcCCCCCCCccccCCccccccC
Q 024288 241 GQCPFGEKCHFAHGQSGILCCL 262 (269)
Q Consensus 241 G~C~~G~~C~FaHg~~e~~~~~ 262 (269)
-.|.+|++|.|+||+.++.|+.
T Consensus 129 ~~c~~g~~c~~lHg~lC~~C~k 150 (284)
T PHA03096 129 DNCYKGKYCEYLHGDICDICEK 150 (284)
T ss_pred hhcccccCcHHHHHHHHHhhcc
Confidence 3799999999999999998876
No 44
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=45.05 E-value=11 Score=21.63 Aligned_cols=15 Identities=40% Similarity=1.183 Sum_probs=7.2
Q ss_pred cccccccCcCCCCCCCc
Q 024288 234 LCIKWTQGQCPFGEKCH 250 (269)
Q Consensus 234 lC~~f~~G~C~~G~~C~ 250 (269)
+|+++ |.|+.|..|.
T Consensus 8 mc~~~--~gC~WGQ~~~ 22 (27)
T PF08098_consen 8 MCKYT--GGCPWGQNCY 22 (27)
T ss_dssp ---TT--TT-SSS-SS-
T ss_pred cceee--cCCccccccc
Confidence 56655 7799999886
No 45
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=43.37 E-value=41 Score=33.08 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=29.3
Q ss_pred CCCCCCCccccccChhhh-cCCCCCCCCCCCCCCCCCc
Q 024288 83 NKGITNIFFKTRLCAKFK-HGACRNGENCNFAHGMEDL 119 (269)
Q Consensus 83 ~~~~~~~~yKT~~C~~f~-~G~C~~G~~C~FaH~~~e~ 119 (269)
+.+..+.++....|+.|. +|.|.+|+.|.+.|+...+
T Consensus 202 rtgp~ks~~s~~r~k~fee~g~~~r~el~p~~hg~~~v 239 (526)
T KOG2135|consen 202 RTGPEKSRNSENRRKFFEEFGVLERGELCPTHHGCVPV 239 (526)
T ss_pred ccCcccccccHHhhhhhHhhceeeecccccccccccee
Confidence 334445566677999998 8999999999999987644
No 46
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=30.40 E-value=72 Score=32.62 Aligned_cols=14 Identities=7% Similarity=0.007 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCCCC
Q 024288 104 CRNGENCNFAHGME 117 (269)
Q Consensus 104 C~~G~~C~FaH~~~ 117 (269)
|..+..|.|.|...
T Consensus 487 ~~estrEe~~~~~~ 500 (681)
T KOG3702|consen 487 VTESTREEFVPPTL 500 (681)
T ss_pred ccccccccccCccc
Confidence 44445555555443
No 47
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=21.02 E-value=39 Score=27.23 Aligned_cols=16 Identities=38% Similarity=0.980 Sum_probs=13.2
Q ss_pred cCcCCCCCCCccccCCc
Q 024288 240 QGQCPFGEKCHFAHGQS 256 (269)
Q Consensus 240 ~G~C~~G~~C~FaHg~~ 256 (269)
.+.|+.|+ |||.||..
T Consensus 59 v~GC~~ge-CHy~~GN~ 74 (132)
T COG1908 59 VAGCKIGE-CHYISGNY 74 (132)
T ss_pred Eecccccc-eeeeccch
Confidence 46899998 99999854
Done!