Query 024288
Match_columns 269
No_of_seqs 182 out of 1706
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 05:39:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.6 8.8E-17 3E-21 117.7 3.6 69 88-181 7-76 (77)
2 1m9o_A Tristetraproline; Cys3H 99.5 5.1E-15 1.7E-19 108.2 3.1 69 151-258 8-77 (77)
3 2d9n_A Cleavage and polyadenyl 99.4 9.6E-14 3.3E-18 101.7 5.7 57 90-181 7-63 (77)
4 2rhk_C Cleavage and polyadenyl 99.2 3.8E-12 1.3E-16 92.0 2.9 59 88-181 11-69 (72)
5 2cqe_A KIAA1064 protein; CCCH 99.2 7.4E-12 2.5E-16 95.8 3.9 52 90-180 10-61 (98)
6 3d2q_A Muscleblind-like protei 99.1 8.1E-11 2.8E-15 84.5 3.6 60 92-180 5-65 (70)
7 2cqe_A KIAA1064 protein; CCCH 99.0 2.6E-10 8.8E-15 87.2 4.8 51 152-256 10-61 (98)
8 2d9n_A Cleavage and polyadenyl 99.0 1.7E-10 5.8E-15 84.3 3.5 59 152-260 7-66 (77)
9 3d2q_A Muscleblind-like protei 98.9 4.8E-10 1.6E-14 80.4 2.5 63 154-259 5-68 (70)
10 2e5s_A Otthump00000018578; ZF- 98.9 3.1E-10 1.1E-14 86.7 0.6 61 92-181 19-80 (98)
11 2rhk_C Cleavage and polyadenyl 98.8 8E-10 2.7E-14 79.7 2.1 56 153-258 14-70 (72)
12 2e5s_A Otthump00000018578; ZF- 98.7 9.1E-10 3.1E-14 84.1 -1.1 67 153-262 18-85 (98)
13 3d2n_A Muscleblind-like protei 98.7 9.5E-09 3.3E-13 76.0 3.2 62 89-181 5-67 (83)
14 2d9m_A Zinc finger CCCH-type d 98.6 2.8E-09 9.5E-14 75.5 -1.1 36 229-264 17-52 (69)
15 2d9m_A Zinc finger CCCH-type d 98.5 1.2E-08 4.1E-13 72.3 -0.2 30 92-121 19-48 (69)
16 3d2n_A Muscleblind-like protei 98.5 4.5E-08 1.5E-12 72.4 2.9 63 153-260 7-70 (83)
17 2rpp_A Muscleblind-like protei 98.5 1E-07 3.5E-12 71.3 4.8 62 89-181 13-75 (89)
18 2rpp_A Muscleblind-like protei 98.2 2E-07 6.8E-12 69.7 1.1 62 154-260 16-78 (89)
19 3u9g_A Zinc finger CCCH-type a 98.0 7.7E-06 2.6E-10 70.5 5.9 22 235-257 178-199 (229)
20 2fc6_A Nuclear, target of EGR1 96.6 0.00051 1.7E-08 45.1 0.7 28 153-180 18-45 (50)
21 2fc6_A Nuclear, target of EGR1 96.4 0.0011 3.7E-08 43.5 1.7 27 91-117 18-45 (50)
22 2lhn_A Nuclear polyadenylated 95.3 0.00069 2.4E-08 49.3 0.0 21 93-116 9-29 (80)
23 3u9g_A Zinc finger CCCH-type a 93.9 0.034 1.2E-06 47.9 3.2 45 92-181 150-199 (229)
24 3u1l_A PRE-mRNA-splicing facto 93.7 0.013 4.6E-07 51.1 0.3 25 233-257 71-95 (240)
25 3u1l_A PRE-mRNA-splicing facto 91.7 0.049 1.7E-06 47.4 1.2 25 93-117 70-94 (240)
26 3v33_A Ribonuclease ZC3H12A; r 67.6 1.1 3.8E-05 38.4 0.0 28 229-258 189-216 (223)
27 3v33_A Ribonuclease ZC3H12A; r 45.4 4.4 0.00015 34.7 0.0 24 92-117 191-214 (223)
28 2kqb_A Aprataxin and PNK-like 41.8 12 0.00043 27.2 1.9 10 241-250 57-66 (89)
29 1ans_A Neurotoxin III; NMR {An 21.4 44 0.0015 18.5 1.4 11 240-250 8-18 (27)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.63 E-value=8.8e-17 Score=117.67 Aligned_cols=69 Identities=42% Similarity=0.912 Sum_probs=31.4
Q ss_pred CCccccccChhhh-cCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCC
Q 024288 88 NIFFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEE 166 (269)
Q Consensus 88 ~~~yKT~~C~~f~-~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~ 166 (269)
+.+|||++|++|+ +|.|++|+.|+|+|+..+++.... ...+|+.+|++|...|.
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~-------------------------~~~~k~~~C~~f~~~G~ 61 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR-------------------------HPKYKTELCHKFKLQGR 61 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-------------------------------------------
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccc-------------------------cccccCCcccchhhCcC
Confidence 4578999999996 899999999999999998864321 12577899998998999
Q ss_pred CCCCCCCccCCCCcc
Q 024288 167 CPYGDRCNFLHEDPA 181 (269)
Q Consensus 167 C~~G~~C~f~H~~~~ 181 (269)
|++|++|+|+|...+
T Consensus 62 C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 62 CPYGSRCHFIHNPTE 76 (77)
T ss_dssp ---------------
T ss_pred CCCcCcCCCCCCCCC
Confidence 999999999998643
No 2
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.51 E-value=5.1e-15 Score=108.22 Aligned_cols=69 Identities=33% Similarity=0.760 Sum_probs=28.3
Q ss_pred hcccccccccccCCCCCCCCCCCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 024288 151 IIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYW 230 (269)
Q Consensus 151 ~~~Kt~~Ck~f~~~g~C~~G~~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~ 230 (269)
..+|+++|++|...|.|++|++|.|+|+..+.... .....+
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~---------------------------------------~~~~~~ 48 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA---------------------------------------NRHPKY 48 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT---------------------------------------C-----
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhccc---------------------------------------cccccc
Confidence 37899999988888999999999999997542210 001356
Q ss_pred cccccccc-ccCcCCCCCCCccccCCccc
Q 024288 231 KTKLCIKW-TQGQCPFGEKCHFAHGQSGI 258 (269)
Q Consensus 231 kt~lC~~f-~~G~C~~G~~C~FaHg~~e~ 258 (269)
++.+|++| ..|.|++|++|+|+|+..|+
T Consensus 49 k~~~C~~f~~~G~C~~G~~C~f~H~~~e~ 77 (77)
T 1m9o_A 49 KTELCHKFKLQGRCPYGSRCHFIHNPTED 77 (77)
T ss_dssp -----------------------------
T ss_pred cCCcccchhhCcCCCCcCcCCCCCCCCCC
Confidence 88999988 89999999999999998774
No 3
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=9.6e-14 Score=101.74 Aligned_cols=57 Identities=35% Similarity=0.727 Sum_probs=48.7
Q ss_pred ccccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC
Q 024288 90 FFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY 169 (269)
Q Consensus 90 ~yKT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~ 169 (269)
.+|+++|++|+.|.|++|++|.|+|+.... ++.+|++|.+.|.|.
T Consensus 7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~----------------------------------~~~~C~~f~~~G~C~- 51 (77)
T 2d9n_A 7 GEKTVVCKHWLRGLCKKGDQCEFLHEYDMT----------------------------------KMPECYFYSKFGECS- 51 (77)
T ss_dssp CCTTSBCHHHHTTCCSCTTSSSSBCSCCTT----------------------------------TSCBCHHHHHTCCCC-
T ss_pred CCcceeCHhHccCcCCCCCCCCCccccccC----------------------------------cCCCCcccCCCCccC-
Confidence 459999999999999999999999987643 235899887769999
Q ss_pred CCCCccCCCCcc
Q 024288 170 GDRCNFLHEDPA 181 (269)
Q Consensus 170 G~~C~f~H~~~~ 181 (269)
|++|+|+|..++
T Consensus 52 ~~~C~f~H~~~~ 63 (77)
T 2d9n_A 52 NKECPFLHIDPE 63 (77)
T ss_dssp CSSCSSBCCCTT
T ss_pred CCCeeccCCCcc
Confidence 899999999643
No 4
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.22 E-value=3.8e-12 Score=91.98 Aligned_cols=59 Identities=34% Similarity=0.674 Sum_probs=49.3
Q ss_pred CCccccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCC
Q 024288 88 NIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEEC 167 (269)
Q Consensus 88 ~~~yKT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C 167 (269)
....|+++|++|+.|.|++|+.|.|+|+.... ++.+|++|.+.|.|
T Consensus 11 ~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~----------------------------------~~~~C~~f~~~G~C 56 (72)
T 2rhk_C 11 MSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMT----------------------------------KMSECYFYSKFGEC 56 (72)
T ss_dssp SSCCCCSBCHHHHTTCCCCGGGSSSBCSCCTT----------------------------------SCCBCHHHHHHSCC
T ss_pred CCCCcCeeCHHHhcCCCCCCCCCCCccccccc----------------------------------cCCcccccCCCCCC
Confidence 34568999999999999999999999986533 23589977765899
Q ss_pred CCCCCCccCCCCcc
Q 024288 168 PYGDRCNFLHEDPA 181 (269)
Q Consensus 168 ~~G~~C~f~H~~~~ 181 (269)
.+ ++|+|+|..+.
T Consensus 57 ~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 57 SN-KECPFLHIDPE 69 (72)
T ss_dssp SB-TTCCSBCCCCC
T ss_pred CC-CCeeccCCCcc
Confidence 99 99999999754
No 5
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.20 E-value=7.4e-12 Score=95.78 Aligned_cols=52 Identities=35% Similarity=0.677 Sum_probs=46.5
Q ss_pred ccccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC
Q 024288 90 FFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY 169 (269)
Q Consensus 90 ~yKT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~ 169 (269)
.+|+++|++|++|.|++|+.|+|+|+ . .+|++|...|.|++
T Consensus 10 ~~k~~lC~~f~~G~C~~G~~C~f~H~---~------------------------------------~~C~~f~~~G~C~~ 50 (98)
T 2cqe_A 10 PKKRELCKFYITGFCARAENCPYMHG---D------------------------------------FPCKLYHTTGNCIN 50 (98)
T ss_dssp SCCCSBCTTTTTTCCSCSTTCSSBSS---S------------------------------------SBCSHHHHTSCCSS
T ss_pred CCCCccCcccccCcCCCCCCCCCCCC---C------------------------------------CcCcCcccCCcCCC
Confidence 36999999999999999999999998 1 37998877899999
Q ss_pred CCCCccCCCCc
Q 024288 170 GDRCNFLHEDP 180 (269)
Q Consensus 170 G~~C~f~H~~~ 180 (269)
|++|+|+|...
T Consensus 51 G~~C~f~H~~~ 61 (98)
T 2cqe_A 51 GDDCMFSHDPL 61 (98)
T ss_dssp CTTCSSBCCCC
T ss_pred CCCCcccCCCC
Confidence 99999999954
No 6
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.05 E-value=8.1e-11 Score=84.49 Aligned_cols=60 Identities=22% Similarity=0.702 Sum_probs=48.2
Q ss_pred ccccChhhhcCCCCCCC-CCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCC
Q 024288 92 KTRLCAKFKHGACRNGE-NCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYG 170 (269)
Q Consensus 92 KT~~C~~f~~G~C~~G~-~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~G 170 (269)
|.++|++|+.|.|.+|+ .|+|+|+..+....+ ...++.+|+.|.+ |.|.++
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~---------------------------~~~~~~vC~~flk-G~C~r~ 56 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDT---------------------------NDNTVTVCMDYIK-GRCSRE 56 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBT---------------------------TTTEEEBCHHHHT-TCCCCT
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCcccccccc---------------------------cCCcceeccccCc-CCCCCC
Confidence 67899999999999999 599999987653211 1346789997765 899998
Q ss_pred CCCccCCCCc
Q 024288 171 DRCNFLHEDP 180 (269)
Q Consensus 171 ~~C~f~H~~~ 180 (269)
.|.|+|..+
T Consensus 57 -~C~y~H~~~ 65 (70)
T 3d2q_A 57 -KCKYFHPPA 65 (70)
T ss_dssp -TCCSBCCCH
T ss_pred -CcCeeCCHH
Confidence 999999864
No 7
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.00 E-value=2.6e-10 Score=87.15 Aligned_cols=51 Identities=31% Similarity=0.705 Sum_probs=44.1
Q ss_pred cccccccccccCCCCCCCCCCCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024288 152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK 231 (269)
Q Consensus 152 ~~Kt~~Ck~f~~~g~C~~G~~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~k 231 (269)
.+|+.+|++| ..|.|.+|++|+|+|+.
T Consensus 10 ~~k~~lC~~f-~~G~C~~G~~C~f~H~~---------------------------------------------------- 36 (98)
T 2cqe_A 10 PKKRELCKFY-ITGFCARAENCPYMHGD---------------------------------------------------- 36 (98)
T ss_dssp SCCCSBCTTT-TTTCCSCSTTCSSBSSS----------------------------------------------------
T ss_pred CCCCccCccc-ccCcCCCCCCCCCCCCC----------------------------------------------------
Confidence 3578899977 57999999999999981
Q ss_pred ccccccc-ccCcCCCCCCCccccCCc
Q 024288 232 TKLCIKW-TQGQCPFGEKCHFAHGQS 256 (269)
Q Consensus 232 t~lC~~f-~~G~C~~G~~C~FaHg~~ 256 (269)
.+|++| ++|.|++|++|+|+|...
T Consensus 37 -~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 37 -FPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp -SBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred -CcCcCcccCCcCCCCCCCcccCCCC
Confidence 149999 799999999999999854
No 8
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.7e-10 Score=84.34 Aligned_cols=59 Identities=31% Similarity=0.628 Sum_probs=47.3
Q ss_pred cccccccccccCCCCCCCCCCCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024288 152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK 231 (269)
Q Consensus 152 ~~Kt~~Ck~f~~~g~C~~G~~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~k 231 (269)
.+|+.+|++|.. |.|.+|++|.|+|+... .+
T Consensus 7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~------------------------------------------------~~ 37 (77)
T 2d9n_A 7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDM------------------------------------------------TK 37 (77)
T ss_dssp CCTTSBCHHHHT-TCCSCTTSSSSBCSCCT------------------------------------------------TT
T ss_pred CCcceeCHhHcc-CcCCCCCCCCCcccccc------------------------------------------------Cc
Confidence 457789997765 89999999999998531 12
Q ss_pred ccccccccc-CcCCCCCCCccccCCccccc
Q 024288 232 TKLCIKWTQ-GQCPFGEKCHFAHGQSGILC 260 (269)
Q Consensus 232 t~lC~~f~~-G~C~~G~~C~FaHg~~e~~~ 260 (269)
+.+|++|++ |.|. |++|+|+|...+...
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~~~~~~~ 66 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHIDPESKI 66 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCCCTTSSC
T ss_pred CCCCcccCCCCccC-CCCeeccCCCccccC
Confidence 347999966 9999 899999998866543
No 9
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.89 E-value=4.8e-10 Score=80.44 Aligned_cols=63 Identities=19% Similarity=0.645 Sum_probs=49.3
Q ss_pred cccccccccCCCCCCCCC-CCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 024288 154 KMKLCKKFYNGEECPYGD-RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKT 232 (269)
Q Consensus 154 Kt~~Ck~f~~~g~C~~G~-~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt 232 (269)
|..+|+.| ..|.|..|+ .|.|+|...+... .....++
T Consensus 5 k~~vC~~f-~~G~C~rg~~~C~f~H~~~~~~~-----------------------------------------~~~~~~~ 42 (70)
T 3d2q_A 5 RLEVCREY-QRGNCNRGENDCRFAHPADSTMI-----------------------------------------DTNDNTV 42 (70)
T ss_dssp EEEBCHHH-HTTCCSSCTTTCSSBCCCTTSCC-----------------------------------------BTTTTEE
T ss_pred cchhCHHH-hcCCCCCCCCCCCCccCcccccc-----------------------------------------cccCCcc
Confidence 55799977 678999999 5999998643110 0123567
Q ss_pred ccccccccCcCCCCCCCccccCCcccc
Q 024288 233 KLCIKWTQGQCPFGEKCHFAHGQSGIL 259 (269)
Q Consensus 233 ~lC~~f~~G~C~~G~~C~FaHg~~e~~ 259 (269)
.+|.+|+.|.|.+| +|+|+|....|+
T Consensus 43 ~vC~~flkG~C~r~-~C~y~H~~~~L~ 68 (70)
T 3d2q_A 43 TVCMDYIKGRCSRE-KCKYFHPPAHLQ 68 (70)
T ss_dssp EBCHHHHTTCCCCT-TCCSBCCCHHHH
T ss_pred eeccccCcCCCCCC-CcCeeCCHHHHh
Confidence 78999999999999 999999988765
No 10
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=3.1e-10 Score=86.70 Aligned_cols=61 Identities=25% Similarity=0.674 Sum_probs=49.0
Q ss_pred ccccChhhhcCCCCCCC-CCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCC
Q 024288 92 KTRLCAKFKHGACRNGE-NCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYG 170 (269)
Q Consensus 92 KT~~C~~f~~G~C~~G~-~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~G 170 (269)
|.++|++|+.|.|++|+ .|+|+|+..++...+ ...++.+|++|. .|.|.++
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~---------------------------~~~~~~vC~~fl-kG~C~r~ 70 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADSTMIDT---------------------------SDNTVTVCMDYI-KGRCMRE 70 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCT---------------------------TTCEEEBCHHHH-HTCCCCT
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchhccccc---------------------------cCCccccchhhc-cCCCCCC
Confidence 78999999999999999 899999987653211 124567999665 4899998
Q ss_pred CCCccCCCCcc
Q 024288 171 DRCNFLHEDPA 181 (269)
Q Consensus 171 ~~C~f~H~~~~ 181 (269)
+|+|+|....
T Consensus 71 -~C~y~H~~~~ 80 (98)
T 2e5s_A 71 -KCKYFHPPAH 80 (98)
T ss_dssp -TCCSBCCCHH
T ss_pred -CcCccCChHH
Confidence 9999999654
No 11
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.84 E-value=8e-10 Score=79.73 Aligned_cols=56 Identities=32% Similarity=0.691 Sum_probs=44.9
Q ss_pred ccccccccccCCCCCCCCCCCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 024288 153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKT 232 (269)
Q Consensus 153 ~Kt~~Ck~f~~~g~C~~G~~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt 232 (269)
.++.+|++|.+ |.|.+|+.|.|+|+... .++
T Consensus 14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~------------------------------------------------~~~ 44 (72)
T 2rhk_C 14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDM------------------------------------------------TKM 44 (72)
T ss_dssp CCCSBCHHHHT-TCCCCGGGSSSBCSCCT------------------------------------------------TSC
T ss_pred CcCeeCHHHhc-CCCCCCCCCCCcccccc------------------------------------------------ccC
Confidence 46689997765 89999999999998521 134
Q ss_pred cccccccc-CcCCCCCCCccccCCccc
Q 024288 233 KLCIKWTQ-GQCPFGEKCHFAHGQSGI 258 (269)
Q Consensus 233 ~lC~~f~~-G~C~~G~~C~FaHg~~e~ 258 (269)
.+|++|++ |.|.+ ++|+|.|.....
T Consensus 45 ~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 45 SECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred CcccccCCCCCCCC-CCeeccCCCccc
Confidence 47999977 99999 999999987653
No 12
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=9.1e-10 Score=84.06 Aligned_cols=67 Identities=21% Similarity=0.615 Sum_probs=51.5
Q ss_pred ccccccccccCCCCCCCCC-CCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024288 153 HKMKLCKKFYNGEECPYGD-RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK 231 (269)
Q Consensus 153 ~Kt~~Ck~f~~~g~C~~G~-~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~k 231 (269)
.|..+|++|.+ |.|..|+ .|+|+|....... .....+
T Consensus 18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~-----------------------------------------~~~~~~ 55 (98)
T 2e5s_A 18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMI-----------------------------------------DTSDNT 55 (98)
T ss_dssp SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC-----------------------------------------CTTTCE
T ss_pred hhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc-----------------------------------------cccCCc
Confidence 45689997766 8999999 7999999643210 012356
Q ss_pred cccccccccCcCCCCCCCccccCCccccccC
Q 024288 232 TKLCIKWTQGQCPFGEKCHFAHGQSGILCCL 262 (269)
Q Consensus 232 t~lC~~f~~G~C~~G~~C~FaHg~~e~~~~~ 262 (269)
...|.+|++|.|.+| +|+|.|....+...+
T Consensus 56 ~~vC~~flkG~C~r~-~C~y~H~~~~l~~~~ 85 (98)
T 2e5s_A 56 VTVCMDYIKGRCMRE-KCKYFHPPAHLQAKI 85 (98)
T ss_dssp EEBCHHHHHTCCCCT-TCCSBCCCHHHHHHH
T ss_pred cccchhhccCCCCCC-CcCccCChHHHHHHH
Confidence 678999999999999 999999988776433
No 13
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.67 E-value=9.5e-09 Score=76.03 Aligned_cols=62 Identities=23% Similarity=0.617 Sum_probs=48.6
Q ss_pred CccccccChhhhcCCCCCCC-CCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCC
Q 024288 89 IFFKTRLCAKFKHGACRNGE-NCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEEC 167 (269)
Q Consensus 89 ~~yKT~~C~~f~~G~C~~G~-~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C 167 (269)
.+.|.++|+.|+.|.|.+|+ .|+|+|....+..- ..++.+|..|. .|.|
T Consensus 5 ~~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~-----------------------------~~~~~vC~dfl-kG~C 54 (83)
T 3d2n_A 5 KWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVE-----------------------------NGRVIACFDSL-KGRC 54 (83)
T ss_dssp GGGEEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEE-----------------------------TTEEECCHHHH-TTCC
T ss_pred ccccchhcHHHhcCCCCCCCCCCCCcCCCcccccc-----------------------------CCceeehhHhh-hccc
Confidence 45688999999999999997 99999987643110 12456898775 5799
Q ss_pred CCCCCCccCCCCcc
Q 024288 168 PYGDRCNFLHEDPA 181 (269)
Q Consensus 168 ~~G~~C~f~H~~~~ 181 (269)
..+ .|+|.|....
T Consensus 55 ~r~-~C~y~H~~~~ 67 (83)
T 3d2n_A 55 SRE-NCKYLHPPPH 67 (83)
T ss_dssp CCS-SCSSCCCCHH
T ss_pred cCC-CcceeCChHH
Confidence 998 9999999654
No 14
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=2.8e-09 Score=75.54 Aligned_cols=36 Identities=28% Similarity=0.641 Sum_probs=31.2
Q ss_pred CcccccccccccCcCCCCCCCccccCCccccccCcc
Q 024288 229 YWKTKLCIKWTQGQCPFGEKCHFAHGQSGILCCLDH 264 (269)
Q Consensus 229 ~~kt~lC~~f~~G~C~~G~~C~FaHg~~e~~~~~~~ 264 (269)
..+.+||.+|.+|.|++|++|+||||++||+..+..
T Consensus 17 ~~k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~~~~R 52 (69)
T 2d9m_A 17 TGYFSICDRYMNGTCPEGNSCKFAHGNAELHEWEER 52 (69)
T ss_dssp CSCCSBCHHHHHSCCSSCSSCSSBSSHHHHHHHHHH
T ss_pred CCCcccCcccCcCCCCCCCccCCcCCHHHHhhHHHH
Confidence 346699999999999999999999999999875543
No 15
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=1.2e-08 Score=72.26 Aligned_cols=30 Identities=33% Similarity=0.947 Sum_probs=27.9
Q ss_pred ccccChhhhcCCCCCCCCCCCCCCCCCcCC
Q 024288 92 KTRLCAKFKHGACRNGENCNFAHGMEDLRQ 121 (269)
Q Consensus 92 KT~~C~~f~~G~C~~G~~C~FaH~~~e~r~ 121 (269)
|++||.+|.+|.|++|++|.|||+.+|||.
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSHHHHHH
T ss_pred CcccCcccCcCCCCCCCccCCcCCHHHHhh
Confidence 669999999999999999999999999964
No 16
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.50 E-value=4.5e-08 Score=72.39 Aligned_cols=63 Identities=19% Similarity=0.510 Sum_probs=48.5
Q ss_pred ccccccccccCCCCCCCCC-CCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024288 153 HKMKLCKKFYNGEECPYGD-RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK 231 (269)
Q Consensus 153 ~Kt~~Ck~f~~~g~C~~G~-~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~k 231 (269)
.+..+|+.|.+ |.|..|+ .|+|+|..... .. ...+
T Consensus 7 ~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~-~~------------------------------------------~~~~ 42 (83)
T 3d2n_A 7 LTLEVCREFQR-GTCSRPDTECKFAHPSKSC-QV------------------------------------------ENGR 42 (83)
T ss_dssp GEEEBCTTGGG-TCCCSCTTTCSSBCCCTTC-CE------------------------------------------ETTE
T ss_pred ccchhcHHHhc-CCCCCCCCCCCCcCCCccc-cc------------------------------------------cCCc
Confidence 45679998876 8999997 99999996421 00 1124
Q ss_pred cccccccccCcCCCCCCCccccCCccccc
Q 024288 232 TKLCIKWTQGQCPFGEKCHFAHGQSGILC 260 (269)
Q Consensus 232 t~lC~~f~~G~C~~G~~C~FaHg~~e~~~ 260 (269)
...|.+|++|.|.++ .|+|.|+...+..
T Consensus 43 ~~vC~dflkG~C~r~-~C~y~H~~~~l~~ 70 (83)
T 3d2n_A 43 VIACFDSLKGRCSRE-NCKYLHPPPHLKT 70 (83)
T ss_dssp EECCHHHHTTCCCCS-SCSSCCCCHHHHH
T ss_pred eeehhHhhhccccCC-CcceeCChHHHHH
Confidence 457999999999998 9999999877654
No 17
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.50 E-value=1e-07 Score=71.34 Aligned_cols=62 Identities=21% Similarity=0.584 Sum_probs=48.2
Q ss_pred CccccccChhhhcCCCCCCC-CCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCC
Q 024288 89 IFFKTRLCAKFKHGACRNGE-NCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEEC 167 (269)
Q Consensus 89 ~~yKT~~C~~f~~G~C~~G~-~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C 167 (269)
.+.+.++|+.|+.|.|.+|+ .|+|+|....+... ..++..|..|. .|.|
T Consensus 13 ~~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~-----------------------------~~~~~vC~dfl-kG~C 62 (89)
T 2rpp_A 13 KWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVE-----------------------------NGRVIACFDSL-KGRC 62 (89)
T ss_dssp SSSEECBCHHHHHTCCCCCTTTSSSBCCCSSSCCB-----------------------------TTBEEBCHHHH-HTCC
T ss_pred CcchhhhchHHhcCCCCCCCCCCCCcCCCcccccc-----------------------------CCceeeehhhh-hCcC
Confidence 34578899999999999998 99999987754210 12456898775 5799
Q ss_pred CCCCCCccCCCCcc
Q 024288 168 PYGDRCNFLHEDPA 181 (269)
Q Consensus 168 ~~G~~C~f~H~~~~ 181 (269)
..+ .|+|.|....
T Consensus 63 ~r~-~Cky~H~~~h 75 (89)
T 2rpp_A 63 SRE-NCKYLHPPTH 75 (89)
T ss_dssp CCT-TCCSBCCCHH
T ss_pred CCC-CcceecCHHH
Confidence 987 9999999653
No 18
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.25 E-value=2e-07 Score=69.75 Aligned_cols=62 Identities=19% Similarity=0.518 Sum_probs=47.7
Q ss_pred cccccccccCCCCCCCCC-CCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 024288 154 KMKLCKKFYNGEECPYGD-RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKT 232 (269)
Q Consensus 154 Kt~~Ck~f~~~g~C~~G~-~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt 232 (269)
+..+|+.|.+ |.|..++ .|+|+|...... . ..-+.
T Consensus 16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~-v------------------------------------------~~~~~ 51 (89)
T 2rpp_A 16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQ-V------------------------------------------ENGRV 51 (89)
T ss_dssp EECBCHHHHH-TCCCCCTTTSSSBCCCSSSC-C------------------------------------------BTTBE
T ss_pred hhhhchHHhc-CCCCCCCCCCCCcCCCcccc-c------------------------------------------cCCce
Confidence 4568998876 8999998 999999964310 0 01245
Q ss_pred ccccccccCcCCCCCCCccccCCccccc
Q 024288 233 KLCIKWTQGQCPFGEKCHFAHGQSGILC 260 (269)
Q Consensus 233 ~lC~~f~~G~C~~G~~C~FaHg~~e~~~ 260 (269)
..|.+|++|.|.++ .|+|.|....+..
T Consensus 52 ~vC~dflkG~C~r~-~Cky~H~~~hl~~ 78 (89)
T 2rpp_A 52 IACFDSLKGRCSRE-NCKYLHPPTHLKT 78 (89)
T ss_dssp EBCHHHHHTCCCCT-TCCSBCCCHHHHH
T ss_pred eeehhhhhCcCCCC-CcceecCHHHHHH
Confidence 57999999999997 9999999876654
No 19
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.99 E-value=7.7e-06 Score=70.54 Aligned_cols=22 Identities=27% Similarity=0.762 Sum_probs=19.6
Q ss_pred ccccccCcCCCCCCCccccCCcc
Q 024288 235 CIKWTQGQCPFGEKCHFAHGQSG 257 (269)
Q Consensus 235 C~~f~~G~C~~G~~C~FaHg~~e 257 (269)
|.+|..|.|.+ .+|.-.|...+
T Consensus 178 C~~Fl~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 178 CEHFTRGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp CHHHHTTCCCC-SSCSSCCCTTS
T ss_pred cchhhcCCcCC-CCccCccCccC
Confidence 99999999999 89999997644
No 20
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.56 E-value=0.00051 Score=45.06 Aligned_cols=28 Identities=29% Similarity=0.642 Sum_probs=25.0
Q ss_pred ccccccccccCCCCCCCCCCCccCCCCc
Q 024288 153 HKMKLCKKFYNGEECPYGDRCNFLHEDP 180 (269)
Q Consensus 153 ~Kt~~Ck~f~~~g~C~~G~~C~f~H~~~ 180 (269)
.++.+|..|...|+|++|.+|.+.|+..
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 3567999999999999999999999963
No 21
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.44 E-value=0.0011 Score=43.52 Aligned_cols=27 Identities=30% Similarity=0.699 Sum_probs=24.8
Q ss_pred cccccChhhh-cCCCCCCCCCCCCCCCC
Q 024288 91 FKTRLCAKFK-HGACRNGENCNFAHGME 117 (269)
Q Consensus 91 yKT~~C~~f~-~G~C~~G~~C~FaH~~~ 117 (269)
.++.||..|. -|.|++|..|.+.|+++
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 4888999998 79999999999999976
No 22
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=95.27 E-value=0.00069 Score=49.33 Aligned_cols=21 Identities=29% Similarity=0.705 Sum_probs=16.4
Q ss_pred cccChhhhcCCCCCCCCCCCCCCC
Q 024288 93 TRLCAKFKHGACRNGENCNFAHGM 116 (269)
Q Consensus 93 T~~C~~f~~G~C~~G~~C~FaH~~ 116 (269)
.+.|+++.. |.+ ..|.|.|..
T Consensus 9 ~e~CKf~~~--Ctn-~~C~f~Hp~ 29 (80)
T 2lhn_A 9 LEQCKFGTH--CTN-KRCKYRHAR 29 (80)
Confidence 357977775 888 899999954
No 23
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=93.86 E-value=0.034 Score=47.87 Aligned_cols=45 Identities=22% Similarity=0.624 Sum_probs=37.1
Q ss_pred ccccChhhhc-----CCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCC
Q 024288 92 KTRLCAKFKH-----GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEE 166 (269)
Q Consensus 92 KT~~C~~f~~-----G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~ 166 (269)
=-++|.+| . |.|++++.|...| +|++| ..|.
T Consensus 150 LPeiC~~Y-kG~g~~g~C~~~~~C~kLH------------------------------------------IC~~F-l~G~ 185 (229)
T 3u9g_A 150 LPEICKSY-KGEGRKQTCGQPQPCERLH------------------------------------------ICEHF-TRGN 185 (229)
T ss_dssp SCCBCTTC-CCSSSCCSCSSSSCCCSBC------------------------------------------SCHHH-HTTC
T ss_pred CchHHHHh-CCCCCCCcCCCCCCCccee------------------------------------------ccchh-hcCC
Confidence 34789999 5 4899999999888 79855 5679
Q ss_pred CCCCCCCccCCCCcc
Q 024288 167 CPYGDRCNFLHEDPA 181 (269)
Q Consensus 167 C~~G~~C~f~H~~~~ 181 (269)
|.+ ..|.-.|+..+
T Consensus 186 C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 186 CSY-LNCLRSHNLMD 199 (229)
T ss_dssp CCC-SSCSSCCCTTS
T ss_pred cCC-CCccCccCccC
Confidence 999 79999999744
No 24
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.66 E-value=0.013 Score=51.05 Aligned_cols=25 Identities=28% Similarity=0.796 Sum_probs=22.1
Q ss_pred ccccccccCcCCCCCCCccccCCcc
Q 024288 233 KLCIKWTQGQCPFGEKCHFAHGQSG 257 (269)
Q Consensus 233 ~lC~~f~~G~C~~G~~C~FaHg~~e 257 (269)
.+|.||.+|.|.+|+.|.|.|....
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBSCCC
T ss_pred eEcCccccCCCCCCCCCCccCCCCC
Confidence 3799998899999999999997544
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.73 E-value=0.049 Score=47.44 Aligned_cols=25 Identities=28% Similarity=0.716 Sum_probs=22.3
Q ss_pred cccChhhhcCCCCCCCCCCCCCCCC
Q 024288 93 TRLCAKFKHGACRNGENCNFAHGME 117 (269)
Q Consensus 93 T~~C~~f~~G~C~~G~~C~FaH~~~ 117 (269)
..+|.+|..|.|++|+.|.|.|.+.
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~lP 94 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHIP 94 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSCC
T ss_pred CeEcCccccCCCCCCCCCCccCCCC
Confidence 3599999999999999999999754
No 26
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=67.61 E-value=1.1 Score=38.44 Aligned_cols=28 Identities=25% Similarity=0.545 Sum_probs=0.0
Q ss_pred CcccccccccccCcCCCCCCCccccCCccc
Q 024288 229 YWKTKLCIKWTQGQCPFGEKCHFAHGQSGI 258 (269)
Q Consensus 229 ~~kt~lC~~f~~G~C~~G~~C~FaHg~~e~ 258 (269)
..+.++|.|-. .|.||.+|.|.|.+...
T Consensus 189 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 216 (223)
T 3v33_A 189 EHRKQPCPYGR--KCTYGIKCRFFHPERPS 216 (223)
T ss_dssp ------------------------------
T ss_pred ccCCCCCCCCc--ccccCCcceecCCccCC
Confidence 33667899874 59999999999987643
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=45.38 E-value=4.4 Score=34.65 Aligned_cols=24 Identities=25% Similarity=0.593 Sum_probs=0.0
Q ss_pred ccccChhhhcCCCCCCCCCCCCCCCC
Q 024288 92 KTRLCAKFKHGACRNGENCNFAHGME 117 (269)
Q Consensus 92 KT~~C~~f~~G~C~~G~~C~FaH~~~ 117 (269)
+..+|.+=. .|.||.+|+|.|.+.
T Consensus 191 ~~~~~~~~~--~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 191 RKQPCPYGR--KCTYGIKCRFFHPER 214 (223)
T ss_dssp --------------------------
T ss_pred CCCCCCCCc--ccccCCcceecCCcc
Confidence 456788754 599999999999765
No 28
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=41.75 E-value=12 Score=27.19 Aligned_cols=10 Identities=40% Similarity=1.325 Sum_probs=0.0
Q ss_pred CcCCCCCCCc
Q 024288 241 GQCPFGEKCH 250 (269)
Q Consensus 241 G~C~~G~~C~ 250 (269)
-.|+||.+|-
T Consensus 57 p~C~YG~~CY 66 (89)
T 2kqb_A 57 PECPYGPSCY 66 (89)
T ss_dssp ----------
T ss_pred CCCCCchhhh
Confidence 4688888883
No 29
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=21.41 E-value=44 Score=18.45 Aligned_cols=11 Identities=45% Similarity=1.331 Sum_probs=9.4
Q ss_pred cCcCCCCCCCc
Q 024288 240 QGQCPFGEKCH 250 (269)
Q Consensus 240 ~G~C~~G~~C~ 250 (269)
.|.|+.|..|.
T Consensus 8 ~~gCpWGQ~~~ 18 (27)
T 1ans_A 8 WGGCPWGQNCY 18 (27)
T ss_dssp TTTCSSSCSSC
T ss_pred ccCCccccccc
Confidence 38999999986
Done!