BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024290
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 88 VVGATGTLGRQIVRRALDEGYDVRCLVRPRPA---PADFLRDW-GAT----VVNADLSKP 139
V G TG LG I++ L+ GY V +R P FL + GA+ NADLS P
Sbjct: 6 VTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNP 65
Query: 140 ETIPATLVG----VHTV--IDCATGRPEEPIKKVDWEGKVALIQ-CAKAMGIQKYVFYS 191
++ A + G HT ID A PEE + K +G + +++ C + ++++++ S
Sbjct: 66 DSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTS 124
>pdb|1XQ6|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1XQ6|B Chain B, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1YBM|A Chain A, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|1YBM|B Chain B, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|2Q46|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q46|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q4B|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
pdb|2Q4B|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
Length = 253
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 35/172 (20%)
Query: 85 SILVVGATGTLGRQIVRRALDEGYD---VRCLVRPRPAPADFLRDWGATVVNADLSKPET 141
++LV GA+G G QIV + L EG D + LVR + A V D++ ++
Sbjct: 6 TVLVTGASGRTG-QIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGE--ADVFIGDITDADS 62
Query: 142 IPATLVGVHTVIDCAT--------------GRPE------EPIKKVDWEGKVALIQCAKA 181
I G+ ++ + GRPE + ++VDW G+ I AK
Sbjct: 63 INPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKV 122
Query: 182 MGIQKYVFYSIHNCDKHPEVPLMEI--------KYCTEQFLQDSGLPHVIIR 225
G+ K++ +P+ PL ++ K EQ+L DSG P+ IIR
Sbjct: 123 AGV-KHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIR 173
>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent Quinone
Oxidoreductase (Qor2) From Escherichia Coli
pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
Oxidoreductase Qor2 Complexed With Nadph From
Escherichia Coli
Length = 286
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 86 ILVVGATGTLGRQIVRRALDE--GYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETIP 143
I + GATG LG ++ + + +VR PA A L G TV AD +
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVR-NPAKAQALAAQGITVRQADYGDEAALT 60
Query: 144 ATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVPL 203
+ L GV ++ ++ E ++ V I AKA G++ + S+ + D P + L
Sbjct: 61 SALQGVEKLLLISS---SEVGQRAPQHRNV--INAAKAAGVKFIAYTSLLHADTSP-LGL 114
Query: 204 MEIKYCTEQFLQDSGLPHVIIR 225
+ TE+ L DSG+ + ++R
Sbjct: 115 ADEHIETEKMLADSGIVYTLLR 136
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPA-----PADFLRDW---GATVVNADLS 137
IL++GATG +GR + + +LD G+ LVR A A L + GA +V+ +
Sbjct: 7 ILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSID 66
Query: 138 KPETIPATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCD- 196
++ + V VI + + E +V +I+ K +G K F S D
Sbjct: 67 DHASLVEAVKNVDVVIST--------VGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDV 118
Query: 197 -----KHPEVPLMEIKYCTEQFLQDSGLPHVII 224
P + E+K + ++ G+P+ +
Sbjct: 119 DNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYV 151
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(H)
Length = 287
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 85 SILVVGATGTLGRQIVRRALDE--GYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETI 142
SI V GATG LG +++ L + + +VR A L D G V + D ++PE++
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVR-NVEKASTLADQGVEVRHGDYNQPESL 60
Query: 143 PATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVP 202
GV ++ + + + V +++ A+ G+ K++ Y+ + + +P
Sbjct: 61 QKAFAGVSKLLFISGPHYDNTLLIVQHAN---VVKAARDAGV-KHIAYTGYAFAEESIIP 116
Query: 203 LMEIKYCTEQFLQDSGLPHVIIRLWPY 229
L + TE ++ + +P+ +R Y
Sbjct: 117 LAHVHLATEYAIRTTNIPYTFLRNALY 143
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of Triphenylmethane
Dyes By Citrobacter Sp. Triphenylmethane Reductase
Length = 287
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 85 SILVVGATGTLGRQIVRRALDE--GYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETI 142
SI V GATG LG +++ L + + +VR A L D G V + D ++PE++
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVR-NVEKASTLADQGVEVRHGDYNQPESL 60
Query: 143 PATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVP 202
GV ++ + + + V +++ A+ G+ K++ Y+ + + +P
Sbjct: 61 QKAFAGVSKLLFISGPHYDNTLLIVQHAN---VVKAARDAGV-KHIAYTGYAFAEESIIP 116
Query: 203 LMEIKYCTEQFLQDSGLPHVIIRLWPY 229
L + TE ++ + +P+ +R Y
Sbjct: 117 LAHVHLATEYAIRTTNIPYTFLRNALY 143
>pdb|2A35|A Chain A, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
pdb|2A35|B Chain B, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
Length = 215
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 60/147 (40%), Gaps = 10/147 (6%)
Query: 83 PTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETI 142
P +L+ GATG G ++ R L E + + R A A+ R + N E +
Sbjct: 5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPR-----LDNPVGPLAELL 59
Query: 143 PATLVGVHTVIDC-----ATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDK 197
P + T C EE + VD++ +A+ + A MG + Y+ S D
Sbjct: 60 PQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADA 119
Query: 198 HPEVPLMEIKYCTEQFLQDSGLPHVII 224
+ +K EQ LQ+ G P + I
Sbjct: 120 KSSIFYNRVKGELEQALQEQGWPQLTI 146
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 23/153 (15%)
Query: 84 TSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPA---------DFLRDWGATVVNA 134
IL++G TG +GR IV ++ G LVR A D + G ++
Sbjct: 3 NKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEG 62
Query: 135 DLSKPETIPATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIH- 193
D++ ET+ + V VI CA GR + E +V +I+ K G K F S
Sbjct: 63 DINDHETLVKAIKQVDIVI-CAAGR-------LLIEDQVKIIKAIKEAGNVKKFFPSEFG 114
Query: 194 -NCDKHPEVP----LMEIKYCTEQFLQDSGLPH 221
+ D+H V + E K + ++ G+P+
Sbjct: 115 LDVDRHDAVEPVRQVFEEKASIRRVIEAEGVPY 147
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 85 SILVVGATGTLGRQIVRR--ALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETI 142
SI V GATG LG +++ A + +VR A L D G V + D ++PE++
Sbjct: 2 SIAVTGATGQLGGLVIQHLXAAVPASQIIAIVR-NVEKASTLADQGVEVRHGDYNQPESL 60
Query: 143 PATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVP 202
GV ++ + + + V +++ A+ G+ K++ Y+ + + +P
Sbjct: 61 QKAFAGVSKLLFISGPHYDNTLLIVQHAN---VVKAARDAGV-KHIAYTGYAFAEESIIP 116
Query: 203 LMEIKYCTEQFLQDSGLPHVIIRLWPY 229
L + TE ++ + +P+ +R Y
Sbjct: 117 LAHVHLATEYAIRTTNIPYTFLRNALY 143
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 23/162 (14%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVRPRP-APA-----DFLRDWGATVVNADLSKP 139
+L+ GATG +G+ + +LD L RP P +P+ L D GA +V +++
Sbjct: 13 VLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQ 72
Query: 140 ETIPATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSI--HNCDK 197
E + L I +T E + ++AL++ KA+G K S H+ ++
Sbjct: 73 EAMEKILKEHEIDIVVSTVGGESILD------QIALVKAMKAVGTIKRFLPSEFGHDVNR 126
Query: 198 ----HPEVPLMEIKYCTEQFLQDSGLPHVI-----IRLWPYW 230
P + + K Q +++SG+P I WPY+
Sbjct: 127 ADPVEPGLNMYREKRRVRQLVEESGIPFTYICCNSIASWPYY 168
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 24/126 (19%)
Query: 85 SILVVGATGTLGRQIVRRALDEGYDVRCLVR------------PRPAPADFLRDWGATVV 132
++ V GA+G +G +V R L+ GY VR VR P L W
Sbjct: 7 TVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLW----- 61
Query: 133 NADLSKPETIPATLVG------VHTVIDCATGRPEEPIKKVDWEGKVALIQ-CAKAMGIQ 185
ADL+ + + G V T +D + PE + K EG + +++ CA A ++
Sbjct: 62 KADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVR 121
Query: 186 KYVFYS 191
+ VF S
Sbjct: 122 RLVFTS 127
>pdb|2VRC|D Chain D, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 7/147 (4%)
Query: 85 SILVVGATGTLGRQIVRR--ALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETI 142
SI V GATG LG +++ A + +VR A L D G V + D ++PE++
Sbjct: 2 SIAVTGATGQLGGLVIQHLXAAVPASQIIAIVR-NVEKASTLADQGVEVRHGDYNQPESL 60
Query: 143 PATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVP 202
GV ++ + + + V +++ A+ G+ K++ Y+ + + +P
Sbjct: 61 QKAFAGVSKLLFISGPHYDNTLLIVQHAN---VVKAARDAGV-KHIAYTGYAFAEESIIP 116
Query: 203 LMEIKYCTEQFLQDSGLPHVIIRLWPY 229
L + TE + + +P+ +R Y
Sbjct: 117 LAHVHLATEYATRTTNIPYTFLRNALY 143
>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS
HALODURANS
Length = 236
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 12/159 (7%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGAT-VVNADLSKPETIPA 144
+LVVGA G + R ++ ++G++ VR + LR+ GA+ +V A+L E
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVAXVRNEEQGPE-LRERGASDIVVANLE--EDFSH 80
Query: 145 TLVGVHTVIDCATGRPEEPIKK---VDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEV 201
+ V+ A P K +D G + IQ A+ GI++++ S +
Sbjct: 81 AFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIXVSSVGTVDPDQG 140
Query: 202 PLMEIKYCTEQFLQD-----SGLPHVIIRLWPYWAICST 235
P Y + L D S L + I+R P ST
Sbjct: 141 PXNXRHYLVAKRLADDELKRSSLDYTIVRPGPLSNEEST 179
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN IV
Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME TERNARY
Complex
Length = 206
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 19/112 (16%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVR---------PRPAPADFLRDWGATVVNADL 136
I + GATG G + +A+ GY+V LVR PRP A VV D+
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRP----------AHVVVGDV 55
Query: 137 SKPETIPATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYV 188
+ + T+ G VI R + V EG ++ KA G+ K V
Sbjct: 56 LQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVV 107
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCL-VRPRPAPADFLRDWGATVVNADLSKPETIPA 144
ILV G+ G +GR +V +G VR +RP G V L + +
Sbjct: 22 ILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGT--------GGEEVVGSLEDGQALSD 73
Query: 145 TLVGVHTVIDCATGRPEEPIKK-----VDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHP 199
++GV V+ P + V+ EG L+ A A G++++VF S + + +P
Sbjct: 74 AIMGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFAS--SGEVYP 131
Query: 200 E 200
E
Sbjct: 132 E 132
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 84 TSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDW---GATVVNADLSKPE 140
+ IL+ G TG +G +V+ +L G+ RP + L ++ GA +V +L + E
Sbjct: 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHE 71
Query: 141 TIPATLVGVHTVIDC 155
+ + V VI
Sbjct: 72 KLVELMKKVDVVISA 86
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 84 TSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDW---GATVVNADLSKPE 140
+ IL+ G TG +G +V+ +L G+ RP + L ++ GA +V +L + E
Sbjct: 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHE 71
Query: 141 TIPATLVGVHTVIDC 155
+ + V VI
Sbjct: 72 KLVELMKKVDVVISA 86
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 84 TSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDW---GATVVNADLSKPE 140
+ IL+ G TG +G +V+ +L G+ RP + L ++ GA +V +L + E
Sbjct: 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHE 71
Query: 141 TIPATLVGVHTVIDC 155
+ + V VI
Sbjct: 72 KLVELMKKVDVVISA 86
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 82 RPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRP-------RPAPADFLRDWGATVVNA 134
+ + +L+VG TG +G++IV ++ G+ L RP + + + GA ++ A
Sbjct: 3 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEA 62
Query: 135 DLSKPETIPATLVGVHTVIDCATG 158
L + + L V VI G
Sbjct: 63 SLDDHQRLVDALKQVDVVISALAG 86
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 66/173 (38%), Gaps = 33/173 (19%)
Query: 84 TSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKP---- 139
SIL+ G G +G V++ +DEG V + + D + + GA N DL
Sbjct: 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITE-GAKFYNGDLRDKAFLR 60
Query: 140 -----ETIPATLVGVHTVIDCATG-RPEEPIKKVDWE--GKVALIQCAKAMGIQKYVFYS 191
E I A + H D G E+P++ + G + L++ + K++F S
Sbjct: 61 DVFTQENIEAVM---HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSS 117
Query: 192 IHNCDKHPEVPLM-------------EIKYCTEQFL----QDSGLPHVIIRLW 227
+V L+ E K E+ L Q S L + I R +
Sbjct: 118 TAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYF 170
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 84 TSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDW---GATVVNADLSKPE 140
+ IL+ G TG +G +V+ +L G+ RP + L ++ GA +V +L + E
Sbjct: 8 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHE 67
Query: 141 TIPATLVGVHTVIDC 155
+ + V VI
Sbjct: 68 KLVELMKKVDVVISA 82
>pdb|1XGK|A Chain A, Crystal Structure Of N12g And A18g Mutant Nmra
Length = 352
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 10/146 (6%)
Query: 85 SILVVGATGTLGRQIVRRALDEGYDVRCLVRP-RPAPADFLRDW-GATVVNADLSKPETI 142
+I VVGATG G ++R A G+ VR V + A+ L+ T+ L +
Sbjct: 7 TIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPL 66
Query: 143 PATLV-GVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKH--- 198
TL G H T + + I GK +A IQ Y++ S+ + +
Sbjct: 67 MDTLFEGAHLAFINTTSQAGDEIAI----GKDLADAAKRAGTIQHYIYSSMPDHSLYGPW 122
Query: 199 PEVPLMEIKYCTEQFLQDSGLPHVII 224
P VP+ K+ E +++ GLP +
Sbjct: 123 PAVPMWAPKFTVENYVRQLGLPSTFV 148
>pdb|3DQP|A Chain A, Crystal Structure Of The Oxidoreductase Ylbe From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr121
Length = 219
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 19/114 (16%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVRP--------RPAPADFLRDWGATVVNADLS 137
I +VG+TG +G+ +++ Y + R F DW
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDW---------- 52
Query: 138 KPETIPATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYS 191
PE L G +I+ +G + + KVD G V L Q A+ +++++ S
Sbjct: 53 TPEEXAKQLHGXDAIINV-SGSGGKSLLKVDLYGAVKLXQAAEKAEVKRFILLS 105
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 22/153 (14%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVRP-----RPAPADF---LRDWGATVVNADLS 137
I++ G TG +G+ +VR +L + RP P+ R G T++ ++
Sbjct: 7 IIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEME 66
Query: 138 KPETIPATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDK 197
+ E + + L V VI P + ++ +I KA G K S C++
Sbjct: 67 EHEKMVSVLKQVDIVISAL------PFPMIS--SQIHIINAIKAAGNIKRFLPSDFGCEE 118
Query: 198 HPEVPL------MEIKYCTEQFLQDSGLPHVII 224
PL +E K + ++ + LP+ +
Sbjct: 119 DRIKPLPPFESVLEKKRIIRRAIEAAALPYTYV 151
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGA 129
+LV GA G + +V + L+ GY VR R A+ + W A
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDA 57
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGA 129
+LV GA G + +V + L+ GY VR R A+ + W A
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDA 57
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 13/130 (10%)
Query: 75 MSPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADF-----LRDWG- 128
M+ P+ + VVG TG + +V+ L +GY V VR L++ G
Sbjct: 1 MATQHPIGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGD 60
Query: 129 ATVVNADLSKPETIPATLVG------VHTVIDCATGRPEEPIKKVDWEGKVALIQ-CAKA 181
+ ADL+ + A + G V T + A+ PE + K +G V +++ C +A
Sbjct: 61 LKIFRADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRA 120
Query: 182 MGIQKYVFYS 191
+++ + S
Sbjct: 121 KSVKRVILTS 130
>pdb|1VJO|A Chain A, Crystal Structure Of Alanine--Glyoxylate Aminotransferase
(Alr1004) From Nostoc Sp. At 1.70 A Resolution
Length = 393
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 53 TQQMVVKCSAGGGTSGTVQAVNMSPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRC 112
T+ + +G GT+ A + V P ++++G G G ++V A G DVR
Sbjct: 82 TENPLTIAVSGTGTA----AXEATIANAVEPGDVVLIGVAGYFGNRLVDXAGRYGADVRT 137
Query: 113 LVRPRPAPADFLRDWGATVVNADL-SKPET-IPATLVGVHTVIDCATGRPEEPIKKVDWE 170
+ +P WG +L + ET PA L VH +P E + ++ E
Sbjct: 138 ISKP----------WGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCRE 187
Query: 171 -GKVALIQCAKAMG 183
G + L+ ++G
Sbjct: 188 FGTLLLVDTVTSLG 201
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19
Length = 224
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETIPAT 145
I V+GATG G IV A G++V +VR AD L AT+V L E A
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTE---AD 59
Query: 146 LVGVHTVIDC 155
L V V+D
Sbjct: 60 LDSVDAVVDA 69
>pdb|2ZK7|A Chain A, Structure Of A C-Terminal Deletion Mutant Of Thermoplasma
Acidophilum Aldohexose Dehydrogenase (Aldt)
pdb|2ZK7|B Chain B, Structure Of A C-Terminal Deletion Mutant Of Thermoplasma
Acidophilum Aldohexose Dehydrogenase (Aldt)
Length = 257
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 79 TPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSK 138
+ +R ++V GA+ +GR I R +DEG V L P A + + D++
Sbjct: 11 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDH------IECDVTN 64
Query: 139 PETIPATL 146
P+ + A++
Sbjct: 65 PDQVKASI 72
>pdb|2DTD|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (aldt) In Ligand-free Form
pdb|2DTD|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (aldt) In Ligand-free Form
pdb|2DTE|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With Nadh
pdb|2DTE|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With Nadh
pdb|2DTX|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With D-Mannose
pdb|2DTX|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With D-Mannose
Length = 264
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 79 TPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSK 138
+ +R ++V GA+ +GR I R +DEG V L P A + + D++
Sbjct: 4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDH------IECDVTN 57
Query: 139 PETIPATL 146
P+ + A++
Sbjct: 58 PDQVKASI 65
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 82 RPTSILVVGATGTLGRQIVRRALDEGYDVRCLVR 115
+ I+++GA+G +G ++ AL+ G++V +VR
Sbjct: 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVR 36
>pdb|1K6I|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Trigonal Form)
pdb|1K6J|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Monoclinic Form)
pdb|1K6J|B Chain B, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Monoclinic Form)
pdb|1K6X|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator In Complex With Nad At 1.5 A Resolution
(Trigonal Form)
pdb|1TI7|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator, In Complex With Nadp At 1.7a Resolution
pdb|2VUS|A Chain A, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|B Chain B, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|C Chain C, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|D Chain D, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|E Chain E, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|F Chain F, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|G Chain G, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|H Chain H, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUT|A Chain A, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|B Chain B, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|C Chain C, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|D Chain D, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|E Chain E, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|F Chain F, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|G Chain G, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|H Chain H, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|A Chain A, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|B Chain B, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|C Chain C, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|D Chain D, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|E Chain E, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|F Chain F, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|G Chain G, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|H Chain H, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
Length = 352
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 10/146 (6%)
Query: 85 SILVVGATGTLGRQIVRRALDEGYDVRCLVRP-RPAPADFLRDW-GATVVNADLSKPETI 142
+I VV ATG ++R A G+ VR V + A+ L+ T+ L +
Sbjct: 7 TIAVVNATGRQAASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPL 66
Query: 143 PATLV-GVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKH--- 198
TL G H T + + I GK +A IQ Y++ S+ + +
Sbjct: 67 MDTLFEGAHLAFINTTSQAGDEIAI----GKDLADAAKRAGTIQHYIYSSMPDHSLYGPW 122
Query: 199 PEVPLMEIKYCTEQFLQDSGLPHVII 224
P VP+ K+ E +++ GLP +
Sbjct: 123 PAVPMWAPKFTVENYVRQLGLPSTFV 148
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 72 AVNMSPGTPVRPTSILVVGATGTLGRQIV---RRALDEGYDVRCLVR 115
AVN+ PG ++L+ GATG LGR +V R LD + CLVR
Sbjct: 63 AVNL-PGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVR 108
>pdb|3EW7|A Chain A, Crystal Structure Of The Lmo0794 Protein From Listeria
Monocytogenes. Northeast Structural Genomics Consortium
Target Lmr162
Length = 221
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVR 115
I ++GATG G +I+ A + G++V +VR
Sbjct: 3 IGIIGATGRAGSRILEEAKNRGHEVTAIVR 32
>pdb|3GEM|A Chain A, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|B Chain B, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|C Chain C, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|D Chain D, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
Length = 260
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLS 137
IL+ GA+ +G R L+ G+ V R A LR GA + D S
Sbjct: 30 ILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFS 81
>pdb|3OH8|A Chain A, Crystal Structure Of The Nucleoside-Diphosphate Sugar
Epimerase From Corynebacterium Glutamicum. Northeast
Structural Genomics Consortium Target Cgr91
Length = 516
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 83 PTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAP 120
P ++ + G+ G +GR + + G++V LVR P P
Sbjct: 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,521,357
Number of Sequences: 62578
Number of extensions: 353318
Number of successful extensions: 1394
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1363
Number of HSP's gapped (non-prelim): 55
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)