Query 024292
Match_columns 269
No_of_seqs 196 out of 1173
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:30:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 1.5E-53 3.4E-58 383.0 22.2 210 36-268 1-219 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 1.1E-52 2.3E-57 372.7 20.4 218 31-268 7-230 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 1.4E-51 3.1E-56 359.0 18.4 197 35-264 2-201 (280)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 4.7E-50 1E-54 365.6 23.3 214 34-266 11-234 (346)
5 TIGR01293 Kv_beta voltage-depe 100.0 1.4E-49 3E-54 358.6 22.6 210 38-266 1-217 (317)
6 PRK10625 tas putative aldo-ket 100.0 1.3E-48 2.8E-53 356.2 23.0 208 36-265 1-244 (346)
7 PLN02587 L-galactose dehydroge 100.0 8.1E-48 1.8E-52 346.7 21.0 205 38-259 1-211 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 7.3E-46 1.6E-50 329.0 22.2 202 38-261 1-207 (285)
9 KOG1577 Aldo/keto reductase fa 100.0 1.2E-46 2.7E-51 328.4 16.1 191 38-260 6-215 (300)
10 PRK10376 putative oxidoreducta 100.0 1.4E-44 3.1E-49 322.1 21.3 197 38-258 9-218 (290)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.2E-44 2.5E-49 319.1 19.7 182 46-260 1-186 (267)
12 PRK14863 bifunctional regulato 100.0 7.5E-45 1.6E-49 324.0 17.8 196 45-261 2-200 (292)
13 COG4989 Predicted oxidoreducta 100.0 2.8E-45 6E-50 308.3 13.4 207 36-262 1-218 (298)
14 PF00248 Aldo_ket_red: Aldo/ke 100.0 3.3E-43 7.1E-48 311.7 17.3 190 50-260 1-195 (283)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2E-42 4.4E-47 306.1 19.4 186 38-259 6-193 (275)
16 COG1453 Predicted oxidoreducta 100.0 7.9E-40 1.7E-44 289.1 16.3 205 36-262 1-212 (391)
17 KOG1576 Predicted oxidoreducta 100.0 6.9E-39 1.5E-43 271.7 14.4 204 35-260 21-237 (342)
18 KOG3023 Glutamate-cysteine lig 98.3 1.7E-06 3.6E-11 73.5 6.6 73 176-253 155-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 94.4 1.5 3.2E-05 39.5 13.8 157 74-259 135-292 (316)
20 cd03315 MLE_like Muconate lact 93.4 2.8 6E-05 36.6 13.3 158 74-259 86-244 (265)
21 PRK08392 hypothetical protein; 93.1 4.9 0.00011 34.0 14.2 156 76-251 15-179 (215)
22 cd03316 MR_like Mandelate race 92.0 6.2 0.00013 36.0 14.1 159 74-254 140-299 (357)
23 PRK07945 hypothetical protein; 91.4 11 0.00024 34.3 15.9 163 75-251 111-289 (335)
24 PRK08609 hypothetical protein; 91.2 9.7 0.00021 37.4 15.1 161 77-250 351-522 (570)
25 COG1748 LYS9 Saccharopine dehy 90.7 2 4.4E-05 40.0 9.4 79 76-173 80-158 (389)
26 PRK13796 GTPase YqeH; Provisio 90.6 5.5 0.00012 36.8 12.3 144 49-209 34-180 (365)
27 PF07021 MetW: Methionine bios 89.9 2.6 5.6E-05 35.3 8.5 153 79-259 5-172 (193)
28 PRK00164 moaA molybdenum cofac 89.6 15 0.00033 33.0 14.9 162 70-252 47-229 (331)
29 cd04728 ThiG Thiazole synthase 87.6 18 0.0004 31.5 15.9 106 140-252 71-181 (248)
30 PRK07328 histidinol-phosphatas 87.4 19 0.00041 31.5 16.0 168 76-251 19-226 (269)
31 TIGR01928 menC_lowGC/arch o-su 87.3 22 0.00048 32.1 14.4 153 75-259 134-287 (324)
32 PRK06740 histidinol-phosphatas 87.0 11 0.00025 34.2 11.6 101 149-251 156-289 (331)
33 PRK05588 histidinol-phosphatas 86.7 20 0.00044 31.0 15.8 168 75-256 16-219 (255)
34 cd03325 D-galactonate_dehydrat 86.3 24 0.00053 32.2 13.5 157 75-253 125-285 (352)
35 PRK13361 molybdenum cofactor b 86.2 26 0.00056 31.7 15.4 139 71-230 44-195 (329)
36 cd03327 MR_like_2 Mandelate ra 84.4 30 0.00066 31.4 13.2 158 74-253 121-280 (341)
37 PF03102 NeuB: NeuB family; I 84.2 16 0.00035 31.7 10.6 133 72-228 53-204 (241)
38 KOG0023 Alcohol dehydrogenase, 84.1 2.9 6.2E-05 37.9 6.0 150 35-249 173-324 (360)
39 PF00682 HMGL-like: HMGL-like 83.5 27 0.00058 29.7 11.9 128 72-217 11-151 (237)
40 PRK14461 ribosomal RNA large s 83.0 17 0.00037 33.7 10.7 91 166-257 232-352 (371)
41 cd03174 DRE_TIM_metallolyase D 82.9 7.1 0.00015 33.7 8.1 106 141-253 15-135 (265)
42 TIGR02370 pyl_corrinoid methyl 82.8 9 0.0002 32.1 8.3 149 72-246 9-163 (197)
43 PRK00208 thiG thiazole synthas 82.1 34 0.00073 29.9 16.0 106 140-252 71-181 (250)
44 PLN02681 proline dehydrogenase 82.1 48 0.001 31.6 14.8 170 76-257 221-413 (455)
45 cd03322 rpsA The starvation se 81.5 43 0.00093 30.7 14.4 146 75-255 128-274 (361)
46 PRK14464 ribosomal RNA large s 81.5 30 0.00066 31.7 11.7 82 174-257 223-317 (344)
47 cd03318 MLE Muconate Lactonizi 81.3 44 0.00095 30.6 13.6 157 75-258 144-302 (365)
48 PRK07329 hypothetical protein; 81.0 27 0.00059 30.2 10.9 106 149-256 83-218 (246)
49 cd03323 D-glucarate_dehydratas 80.9 44 0.00094 31.2 12.9 154 74-258 169-324 (395)
50 PRK14017 galactonate dehydrata 80.5 40 0.00088 31.1 12.6 159 74-254 125-287 (382)
51 cd03321 mandelate_racemase Man 79.5 34 0.00074 31.3 11.6 152 75-253 143-295 (355)
52 cd03324 rTSbeta_L-fuconate_deh 78.8 47 0.001 31.2 12.5 151 75-253 198-352 (415)
53 cd06543 GH18_PF-ChiA-like PF-C 78.7 49 0.0011 29.6 12.0 169 73-258 88-265 (294)
54 PRK14453 chloramphenicol/florf 78.6 26 0.00056 32.2 10.4 97 161-257 203-330 (347)
55 cd00308 enolase_like Enolase-s 78.5 12 0.00026 31.9 7.8 89 163-259 120-209 (229)
56 COG2089 SpsE Sialic acid synth 78.2 52 0.0011 30.0 11.7 121 72-212 87-226 (347)
57 TIGR02666 moaA molybdenum cofa 78.2 52 0.0011 29.7 14.7 132 71-221 42-187 (334)
58 COG0135 TrpF Phosphoribosylant 77.5 16 0.00035 31.0 8.1 80 156-250 19-102 (208)
59 PF05690 ThiG: Thiazole biosyn 77.4 48 0.001 28.8 11.9 168 49-253 9-182 (247)
60 TIGR03597 GTPase_YqeH ribosome 77.3 18 0.00039 33.3 9.1 144 49-209 28-174 (360)
61 PRK15408 autoinducer 2-binding 77.0 43 0.00094 30.3 11.5 90 126-223 23-112 (336)
62 TIGR00048 radical SAM enzyme, 77.0 20 0.00043 33.0 9.2 90 166-257 219-333 (355)
63 PRK13958 N-(5'-phosphoribosyl) 76.9 8.3 0.00018 32.6 6.3 66 154-226 16-83 (207)
64 cd02070 corrinoid_protein_B12- 76.2 35 0.00077 28.5 9.9 22 73-94 9-30 (201)
65 TIGR02534 mucon_cyclo muconate 75.9 65 0.0014 29.6 14.2 89 163-259 213-302 (368)
66 cd00740 MeTr MeTr subgroup of 75.4 49 0.0011 28.8 10.9 108 142-258 23-131 (252)
67 PRK05985 cytosine deaminase; P 75.2 68 0.0015 29.5 14.2 20 75-94 98-117 (391)
68 cd00408 DHDPS-like Dihydrodipi 74.8 58 0.0012 28.5 13.2 133 70-210 13-171 (281)
69 TIGR01278 DPOR_BchB light-inde 74.1 55 0.0012 31.7 11.8 106 110-222 70-194 (511)
70 cd03329 MR_like_4 Mandelate ra 73.8 73 0.0016 29.2 14.4 155 74-254 144-300 (368)
71 COG4464 CapC Capsular polysacc 73.1 55 0.0012 28.1 10.0 120 69-195 14-134 (254)
72 PRK07534 methionine synthase I 72.8 76 0.0016 29.0 15.4 97 74-171 44-153 (336)
73 PF00682 HMGL-like: HMGL-like 72.7 24 0.00052 30.0 8.2 102 142-249 11-124 (237)
74 cd02069 methionine_synthase_B1 72.1 32 0.0007 29.2 8.7 24 72-95 12-35 (213)
75 cd01965 Nitrogenase_MoFe_beta_ 71.8 29 0.00063 32.6 9.2 106 110-222 66-188 (428)
76 TIGR00735 hisF imidazoleglycer 70.9 70 0.0015 27.7 12.1 88 154-249 163-253 (254)
77 PRK14457 ribosomal RNA large s 70.2 80 0.0017 29.0 11.4 138 111-257 165-330 (345)
78 PRK13210 putative L-xylulose 5 70.2 63 0.0014 28.0 10.5 97 154-251 24-151 (284)
79 PRK15072 bifunctional D-altron 70.0 21 0.00045 33.4 7.8 85 163-255 232-317 (404)
80 PRK14459 ribosomal RNA large s 69.5 91 0.002 29.0 11.6 94 165-258 241-360 (373)
81 COG1751 Uncharacterized conser 69.2 34 0.00074 27.6 7.5 91 166-259 2-96 (186)
82 PRK09485 mmuM homocysteine met 69.2 86 0.0019 28.1 16.0 141 74-214 45-237 (304)
83 cd02930 DCR_FMN 2,4-dienoyl-Co 69.0 93 0.002 28.4 12.0 84 127-211 203-297 (353)
84 PRK14462 ribosomal RNA large s 68.9 70 0.0015 29.5 10.7 88 168-257 226-338 (356)
85 cd07944 DRE_TIM_HOA_like 4-hyd 68.7 32 0.0007 30.2 8.3 59 140-200 15-80 (266)
86 COG3623 SgaU Putative L-xylulo 68.2 15 0.00032 31.9 5.7 78 43-135 65-155 (287)
87 cd00739 DHPS DHPS subgroup of 68.1 69 0.0015 28.0 10.2 107 79-201 87-209 (257)
88 TIGR03849 arch_ComA phosphosul 68.0 40 0.00087 29.2 8.4 98 149-250 12-117 (237)
89 cd00405 PRAI Phosphoribosylant 67.7 67 0.0015 26.7 9.7 41 162-205 73-113 (203)
90 PLN02363 phosphoribosylanthran 67.5 19 0.00042 31.5 6.5 81 132-226 48-130 (256)
91 PRK05692 hydroxymethylglutaryl 66.7 20 0.00043 31.9 6.6 104 142-251 23-138 (287)
92 COG0635 HemN Coproporphyrinoge 66.3 59 0.0013 30.6 9.9 60 141-202 200-276 (416)
93 cd01321 ADGF Adenosine deamina 66.3 99 0.0022 28.3 11.2 15 237-251 237-251 (345)
94 TIGR01428 HAD_type_II 2-haloal 66.3 26 0.00057 28.6 6.9 64 147-211 61-128 (198)
95 PRK01222 N-(5'-phosphoribosyl) 66.3 18 0.0004 30.6 6.0 65 155-226 19-85 (210)
96 TIGR01502 B_methylAsp_ase meth 66.0 36 0.00078 32.0 8.4 86 164-255 265-357 (408)
97 PRK00730 rnpA ribonuclease P; 66.0 30 0.00066 27.4 6.7 61 126-189 47-110 (138)
98 TIGR01496 DHPS dihydropteroate 65.4 88 0.0019 27.3 10.3 99 142-253 20-125 (257)
99 PF13407 Peripla_BP_4: Peripla 65.0 27 0.00059 29.5 7.0 77 144-225 13-89 (257)
100 COG1149 MinD superfamily P-loo 64.9 17 0.00037 32.2 5.6 93 154-257 155-250 (284)
101 TIGR01856 hisJ_fam histidinol 64.8 93 0.002 26.9 12.3 168 75-251 15-234 (253)
102 cd04742 NPD_FabD 2-Nitropropan 64.6 35 0.00075 32.2 7.9 72 181-254 29-103 (418)
103 PRK14467 ribosomal RNA large s 64.4 66 0.0014 29.6 9.6 98 161-258 207-330 (348)
104 TIGR02668 moaA_archaeal probab 63.5 1.1E+02 0.0023 27.1 13.6 128 71-218 39-179 (302)
105 COG0279 GmhA Phosphoheptose is 63.3 81 0.0018 25.9 8.8 123 75-210 28-155 (176)
106 PRK14463 ribosomal RNA large s 63.2 68 0.0015 29.4 9.5 90 166-257 211-325 (349)
107 PRK09058 coproporphyrinogen II 63.1 78 0.0017 30.0 10.2 30 140-170 225-254 (449)
108 PF02679 ComA: (2R)-phospho-3- 62.9 15 0.00032 32.0 4.8 101 148-251 24-131 (244)
109 TIGR03822 AblA_like_2 lysine-2 62.9 1.2E+02 0.0026 27.4 15.5 139 73-224 120-267 (321)
110 TIGR01862 N2-ase-Ialpha nitrog 62.9 95 0.0021 29.4 10.7 105 110-221 102-222 (443)
111 COG1140 NarY Nitrate reductase 62.8 2.7 5.9E-05 38.7 0.3 53 190-248 264-317 (513)
112 PRK14455 ribosomal RNA large s 62.6 59 0.0013 29.9 9.0 90 166-257 223-337 (356)
113 COG2040 MHT1 Homocysteine/sele 62.3 91 0.002 27.9 9.6 170 74-254 42-241 (300)
114 PRK14466 ribosomal RNA large s 62.2 1.3E+02 0.0028 27.7 12.0 91 165-257 210-325 (345)
115 cd03317 NAAAR N-acylamino acid 62.2 1.2E+02 0.0027 27.4 14.2 153 75-259 139-292 (354)
116 cd07943 DRE_TIM_HOA 4-hydroxy- 62.0 55 0.0012 28.5 8.4 27 141-168 18-44 (263)
117 PF01619 Pro_dh: Proline dehyd 61.7 18 0.00039 32.6 5.4 164 75-256 92-283 (313)
118 PRK08645 bifunctional homocyst 61.5 1.7E+02 0.0037 29.1 12.6 97 74-171 42-147 (612)
119 PLN00191 enolase 61.4 56 0.0012 31.2 8.8 97 143-252 296-394 (457)
120 PLN02746 hydroxymethylglutaryl 61.3 53 0.0011 30.2 8.4 96 147-250 69-179 (347)
121 TIGR00683 nanA N-acetylneurami 60.9 1.2E+02 0.0026 26.9 13.2 135 70-209 16-175 (290)
122 PRK00912 ribonuclease P protei 60.9 1.1E+02 0.0023 26.2 11.0 146 75-252 16-173 (237)
123 PF00148 Oxidored_nitro: Nitro 60.2 47 0.001 30.6 8.1 136 110-251 59-221 (398)
124 PRK00077 eno enolase; Provisio 60.2 60 0.0013 30.6 8.8 99 143-254 262-365 (425)
125 TIGR01210 conserved hypothetic 60.1 1.3E+02 0.0028 27.1 10.6 25 181-205 118-144 (313)
126 cd01974 Nitrogenase_MoFe_beta 59.5 79 0.0017 29.8 9.6 116 93-220 62-191 (435)
127 PRK04452 acetyl-CoA decarbonyl 59.4 88 0.0019 28.4 9.3 95 153-255 83-184 (319)
128 PRK12331 oxaloacetate decarbox 59.4 47 0.001 31.6 8.0 23 195-217 88-110 (448)
129 cd01968 Nitrogenase_NifE_I Nit 59.3 1.4E+02 0.0031 27.8 11.2 114 92-221 62-189 (410)
130 cd00950 DHDPS Dihydrodipicolin 59.1 1.2E+02 0.0027 26.4 12.3 132 70-209 16-173 (284)
131 TIGR00190 thiC thiamine biosyn 58.7 46 0.00099 31.2 7.4 102 140-254 135-264 (423)
132 COG2069 CdhD CO dehydrogenase/ 58.7 1E+02 0.0022 27.8 9.2 94 154-257 159-262 (403)
133 cd00739 DHPS DHPS subgroup of 58.3 1.3E+02 0.0028 26.3 11.0 101 142-254 21-128 (257)
134 cd01967 Nitrogenase_MoFe_alpha 58.2 1.6E+02 0.0034 27.3 11.9 105 110-221 72-191 (406)
135 COG0329 DapA Dihydrodipicolina 58.2 1.4E+02 0.003 26.7 10.6 118 142-263 22-148 (299)
136 CHL00076 chlB photochlorophyll 58.1 1.6E+02 0.0034 28.6 11.5 140 110-256 70-248 (513)
137 PRK09856 fructoselysine 3-epim 57.5 1.2E+02 0.0026 26.2 9.8 101 154-255 21-150 (275)
138 PRK11194 ribosomal RNA large s 57.5 1.3E+02 0.0028 27.9 10.3 88 167-256 221-336 (372)
139 PRK02910 light-independent pro 57.2 1.5E+02 0.0033 28.7 11.3 105 110-222 70-194 (519)
140 cd01966 Nitrogenase_NifN_1 Nit 57.2 95 0.0021 29.2 9.6 109 110-221 66-189 (417)
141 PRK14460 ribosomal RNA large s 56.7 1.4E+02 0.0031 27.4 10.5 101 154-257 207-332 (354)
142 cd00954 NAL N-Acetylneuraminic 56.4 89 0.0019 27.6 8.9 114 141-260 17-143 (288)
143 PRK12928 lipoyl synthase; Prov 56.4 89 0.0019 27.9 8.8 81 174-257 185-282 (290)
144 PRK09427 bifunctional indole-3 56.2 57 0.0012 31.2 7.9 63 156-227 274-338 (454)
145 KOG0259 Tyrosine aminotransfer 56.2 1.8E+02 0.0039 27.3 16.3 162 75-259 81-273 (447)
146 cd07943 DRE_TIM_HOA 4-hydroxy- 55.7 1.4E+02 0.003 26.0 16.2 24 72-95 19-42 (263)
147 TIGR01060 eno phosphopyruvate 55.4 81 0.0017 29.8 8.8 84 163-254 278-366 (425)
148 TIGR03822 AblA_like_2 lysine-2 55.2 1.6E+02 0.0035 26.5 11.3 93 166-259 140-240 (321)
149 cd00423 Pterin_binding Pterin 55.0 1.4E+02 0.0031 25.9 10.9 104 142-257 21-131 (258)
150 TIGR00398 metG methionyl-tRNA 55.0 74 0.0016 30.8 8.7 47 145-193 68-114 (530)
151 PRK09545 znuA high-affinity zi 55.0 1.2E+02 0.0025 27.3 9.5 59 194-259 227-288 (311)
152 PRK13352 thiamine biosynthesis 54.9 58 0.0013 30.6 7.4 102 140-254 138-267 (431)
153 TIGR01927 menC_gamma/gm+ o-suc 54.8 64 0.0014 28.9 7.7 87 163-259 183-270 (307)
154 cd07937 DRE_TIM_PC_TC_5S Pyruv 54.6 61 0.0013 28.6 7.5 15 152-166 27-41 (275)
155 PRK08195 4-hyroxy-2-oxovalerat 54.5 1.3E+02 0.0028 27.5 9.7 25 141-166 21-45 (337)
156 KOG1549 Cysteine desulfurase N 54.3 42 0.00091 31.7 6.5 76 178-256 143-221 (428)
157 COG0820 Predicted Fe-S-cluster 54.2 1.2E+02 0.0026 27.9 9.3 90 166-258 216-331 (349)
158 cd03314 MAL Methylaspartate am 54.1 81 0.0018 29.2 8.4 85 165-254 229-320 (369)
159 PRK15440 L-rhamnonate dehydrat 54.1 36 0.00079 31.8 6.2 70 179-253 247-319 (394)
160 COG2159 Predicted metal-depend 53.8 60 0.0013 28.9 7.4 98 155-256 55-167 (293)
161 COG2185 Sbm Methylmalonyl-CoA 53.7 1.1E+02 0.0024 24.3 8.9 69 127-208 12-80 (143)
162 PRK09282 pyruvate carboxylase 53.3 52 0.0011 32.6 7.4 12 154-165 34-45 (592)
163 PRK13478 phosphonoacetaldehyde 53.3 75 0.0016 27.5 7.8 36 176-212 103-138 (267)
164 cd03328 MR_like_3 Mandelate ra 53.2 1.8E+02 0.0039 26.5 13.2 152 74-253 139-293 (352)
165 PRK14454 ribosomal RNA large s 53.2 1.2E+02 0.0025 27.8 9.2 91 165-257 211-326 (342)
166 TIGR01422 phosphonatase phosph 53.0 70 0.0015 27.3 7.5 36 176-212 101-136 (253)
167 PRK13505 formate--tetrahydrofo 52.9 30 0.00065 33.7 5.5 55 203-258 359-413 (557)
168 PF13378 MR_MLE_C: Enolase C-t 52.8 11 0.00023 28.0 2.1 52 198-254 3-54 (111)
169 cd00952 CHBPH_aldolase Trans-o 52.2 1.8E+02 0.0038 26.1 12.5 135 70-210 24-182 (309)
170 PLN02591 tryptophan synthase 51.8 1.6E+02 0.0036 25.6 14.4 127 73-211 14-153 (250)
171 PLN02951 Molybderin biosynthes 51.6 2E+02 0.0043 26.6 14.8 153 72-245 90-262 (373)
172 COG1387 HIS2 Histidinol phosph 51.0 1.6E+02 0.0035 25.3 10.7 156 76-251 17-191 (237)
173 TIGR03217 4OH_2_O_val_ald 4-hy 50.8 1.1E+02 0.0024 27.8 8.7 107 138-252 17-133 (333)
174 COG2062 SixA Phosphohistidine 50.5 1.4E+02 0.003 24.4 8.5 86 111-211 35-120 (163)
175 COG1168 MalY Bifunctional PLP- 50.3 2.2E+02 0.0047 26.6 14.6 133 75-230 41-205 (388)
176 PRK12267 methionyl-tRNA synthe 50.3 1E+02 0.0022 30.8 9.0 48 145-194 73-120 (648)
177 PRK11865 pyruvate ferredoxin o 50.3 1.6E+02 0.0034 26.5 9.4 117 78-213 165-289 (299)
178 PRK01313 rnpA ribonuclease P; 50.2 79 0.0017 24.6 6.6 60 126-188 48-113 (129)
179 PRK14476 nitrogenase molybdenu 50.0 98 0.0021 29.5 8.5 114 95-219 71-198 (455)
180 cd01981 Pchlide_reductase_B Pc 49.9 2.2E+02 0.0048 26.6 11.7 106 110-221 70-197 (430)
181 PRK03459 rnpA ribonuclease P; 49.5 80 0.0017 24.3 6.5 62 125-189 48-114 (122)
182 PRK13803 bifunctional phosphor 49.5 95 0.0021 30.8 8.6 67 156-227 20-88 (610)
183 cd03174 DRE_TIM_metallolyase D 49.4 1.7E+02 0.0036 25.0 15.0 23 73-95 17-39 (265)
184 PRK05283 deoxyribose-phosphate 49.3 1.3E+02 0.0028 26.4 8.5 80 76-164 148-227 (257)
185 COG3454 Metal-dependent hydrol 49.3 21 0.00046 32.4 3.6 15 237-251 214-228 (377)
186 PRK14465 ribosomal RNA large s 49.1 2.1E+02 0.0046 26.2 10.8 90 166-257 216-329 (342)
187 PRK09140 2-dehydro-3-deoxy-6-p 49.1 1.6E+02 0.0035 24.8 13.4 104 72-210 19-122 (206)
188 cd00814 MetRS_core catalytic c 49.0 75 0.0016 28.5 7.3 47 144-192 68-114 (319)
189 PF03279 Lip_A_acyltrans: Bact 48.7 1.7E+02 0.0036 25.7 9.4 66 78-163 110-175 (295)
190 cd06300 PBP1_ABC_sugar_binding 48.1 1.7E+02 0.0037 24.7 10.0 52 145-200 15-69 (272)
191 cd03320 OSBS o-Succinylbenzoat 47.9 50 0.0011 28.7 5.8 88 163-259 153-240 (263)
192 PRK02901 O-succinylbenzoate sy 47.7 1.1E+02 0.0024 27.7 8.2 83 164-259 162-245 (327)
193 PRK14456 ribosomal RNA large s 47.7 1.4E+02 0.003 27.7 8.9 81 175-257 260-353 (368)
194 TIGR01228 hutU urocanate hydra 47.7 65 0.0014 31.0 6.7 90 126-226 157-258 (545)
195 TIGR00126 deoC deoxyribose-pho 47.5 1.8E+02 0.0038 24.7 16.3 158 72-251 15-180 (211)
196 cd01973 Nitrogenase_VFe_beta_l 47.4 2.6E+02 0.0056 26.6 11.5 118 94-221 64-193 (454)
197 COG2896 MoaA Molybdenum cofact 47.4 2.2E+02 0.0048 25.9 11.3 125 72-219 43-183 (322)
198 PRK00499 rnpA ribonuclease P; 47.3 92 0.002 23.5 6.5 61 126-189 39-104 (114)
199 PRK05414 urocanate hydratase; 47.2 69 0.0015 31.0 6.8 90 126-226 166-267 (556)
200 cd01017 AdcA Metal binding pro 47.2 1.3E+02 0.0028 26.4 8.4 51 201-258 205-255 (282)
201 PF10566 Glyco_hydro_97: Glyco 47.2 82 0.0018 28.0 7.0 58 199-256 28-96 (273)
202 PF01120 Alpha_L_fucos: Alpha- 47.0 44 0.00096 30.5 5.5 34 223-256 125-161 (346)
203 PTZ00081 enolase; Provisional 47.0 1.5E+02 0.0033 28.2 9.2 97 142-251 281-381 (439)
204 PRK06015 keto-hydroxyglutarate 47.0 1E+02 0.0023 25.9 7.3 88 143-251 14-102 (201)
205 cd07940 DRE_TIM_IPMS 2-isoprop 46.9 2E+02 0.0042 25.1 12.6 26 72-97 17-42 (268)
206 PRK00133 metG methionyl-tRNA s 46.8 1E+02 0.0022 31.0 8.5 96 91-193 5-117 (673)
207 COG0218 Predicted GTPase [Gene 46.8 1.8E+02 0.0039 24.6 9.5 128 35-189 62-198 (200)
208 smart00633 Glyco_10 Glycosyl h 46.7 1.2E+02 0.0027 26.1 8.1 110 143-255 101-227 (254)
209 PRK10658 putative alpha-glucos 46.7 1.3E+02 0.0029 30.2 9.1 90 161-253 234-345 (665)
210 CHL00200 trpA tryptophan synth 46.6 2E+02 0.0044 25.2 14.0 127 73-211 27-166 (263)
211 PLN02428 lipoic acid synthase 46.6 2.4E+02 0.0052 26.0 15.0 164 73-257 131-325 (349)
212 PRK14470 ribosomal RNA large s 46.4 1.8E+02 0.0038 26.6 9.3 90 166-257 208-322 (336)
213 COG2185 Sbm Methylmalonyl-CoA 46.4 1.5E+02 0.0033 23.6 12.4 107 77-210 28-135 (143)
214 PRK12268 methionyl-tRNA synthe 46.3 1.1E+02 0.0024 29.7 8.5 96 91-193 6-119 (556)
215 PRK12323 DNA polymerase III su 45.7 94 0.002 31.3 7.7 71 142-213 104-176 (700)
216 PRK14478 nitrogenase molybdenu 45.7 2.7E+02 0.0059 26.6 10.9 104 110-220 104-221 (475)
217 PRK07003 DNA polymerase III su 44.8 1E+02 0.0022 31.7 7.8 97 142-248 99-197 (830)
218 TIGR00674 dapA dihydrodipicoli 44.7 2.2E+02 0.0047 25.0 12.5 135 70-210 14-172 (285)
219 TIGR01182 eda Entner-Doudoroff 44.7 1.3E+02 0.0028 25.4 7.6 89 142-251 17-106 (204)
220 cd00952 CHBPH_aldolase Trans-o 44.5 1.1E+02 0.0024 27.4 7.7 111 141-260 25-150 (309)
221 PRK03031 rnpA ribonuclease P; 44.5 1.1E+02 0.0023 23.5 6.5 62 126-189 48-114 (122)
222 cd00959 DeoC 2-deoxyribose-5-p 44.1 1.9E+02 0.0041 24.1 15.8 157 73-251 15-179 (203)
223 PF01081 Aldolase: KDPG and KH 43.9 1.2E+02 0.0026 25.5 7.1 88 143-251 18-106 (196)
224 PRK14040 oxaloacetate decarbox 43.8 1.2E+02 0.0025 30.2 8.1 101 148-251 29-142 (593)
225 PRK03170 dihydrodipicolinate s 43.6 2.3E+02 0.005 24.9 12.9 132 70-209 17-174 (292)
226 PRK10128 2-keto-3-deoxy-L-rham 43.4 2.3E+02 0.005 24.9 9.7 146 73-258 101-265 (267)
227 PRK08446 coproporphyrinogen II 43.0 2.6E+02 0.0057 25.4 10.0 88 73-200 132-229 (350)
228 PRK07535 methyltetrahydrofolat 43.0 2.3E+02 0.005 24.8 10.0 102 143-254 23-124 (261)
229 PRK05406 LamB/YcsF family prot 42.9 1E+02 0.0022 26.9 6.8 74 52-158 13-95 (246)
230 KOG0922 DEAH-box RNA helicase 42.8 27 0.00059 34.6 3.5 39 153-193 413-451 (674)
231 PRK14468 ribosomal RNA large s 42.8 2.6E+02 0.0055 25.6 9.8 91 165-257 206-321 (343)
232 TIGR01430 aden_deam adenosine 42.7 2.5E+02 0.0053 25.1 12.6 112 142-254 65-193 (324)
233 PRK04390 rnpA ribonuclease P; 42.6 1.4E+02 0.0029 22.8 6.8 61 126-188 45-109 (120)
234 COG2055 Malate/L-lactate dehyd 42.3 2.2E+02 0.0047 26.3 9.0 95 141-252 5-114 (349)
235 PRK14477 bifunctional nitrogen 42.2 1.8E+02 0.0039 30.5 9.6 109 110-221 556-676 (917)
236 cd07945 DRE_TIM_CMS Leptospira 42.2 2.5E+02 0.0053 24.9 11.5 70 142-213 108-186 (280)
237 TIGR01285 nifN nitrogenase mol 42.1 2.9E+02 0.0062 26.1 10.3 109 110-220 76-198 (432)
238 PF08013 Tagatose_6_P_K: Tagat 42.0 29 0.00063 32.6 3.4 53 44-98 78-132 (424)
239 PRK11893 methionyl-tRNA synthe 41.8 1.6E+02 0.0034 28.2 8.7 48 145-194 70-117 (511)
240 TIGR00381 cdhD CO dehydrogenas 41.7 3E+02 0.0065 25.7 10.8 94 156-259 150-253 (389)
241 PF13380 CoA_binding_2: CoA bi 41.6 77 0.0017 23.9 5.3 44 202-252 65-108 (116)
242 PRK12569 hypothetical protein; 41.5 1.2E+02 0.0025 26.5 6.9 77 52-159 14-99 (245)
243 PRK08255 salicylyl-CoA 5-hydro 41.3 4.1E+02 0.0088 27.2 12.7 109 127-248 617-737 (765)
244 PRK15108 biotin synthase; Prov 41.1 2.7E+02 0.0059 25.4 9.7 65 142-210 76-144 (345)
245 PF00697 PRAI: N-(5'phosphorib 41.0 1.1E+02 0.0023 25.5 6.6 67 154-228 14-81 (197)
246 PRK09061 D-glutamate deacylase 40.8 3.3E+02 0.0072 26.2 10.7 13 238-250 267-279 (509)
247 TIGR01283 nifE nitrogenase mol 40.7 3.1E+02 0.0067 26.0 10.4 105 110-221 106-228 (456)
248 PRK15063 isocitrate lyase; Pro 40.6 1.7E+02 0.0036 27.8 8.2 159 48-222 147-345 (428)
249 TIGR00238 KamA family protein. 40.6 2.8E+02 0.0061 25.1 13.1 134 74-218 144-283 (331)
250 TIGR00655 PurU formyltetrahydr 40.6 2.6E+02 0.0057 24.8 14.5 142 77-253 14-167 (280)
251 COG3215 PilZ Tfp pilus assembl 40.5 73 0.0016 23.9 4.7 71 74-156 19-105 (117)
252 TIGR01917 gly_red_sel_B glycin 40.3 1.4E+02 0.003 28.3 7.6 74 180-255 289-373 (431)
253 cd03313 enolase Enolase: Enola 40.3 2.4E+02 0.0051 26.5 9.4 81 163-251 277-361 (408)
254 TIGR00035 asp_race aspartate r 40.1 1.5E+02 0.0032 25.2 7.5 62 142-204 14-88 (229)
255 cd00408 DHDPS-like Dihydrodipi 39.7 1.9E+02 0.0042 25.1 8.4 112 141-259 14-137 (281)
256 PRK14041 oxaloacetate decarbox 39.5 1.4E+02 0.0029 28.7 7.7 16 201-216 120-135 (467)
257 cd07937 DRE_TIM_PC_TC_5S Pyruv 39.1 2.7E+02 0.0058 24.4 15.8 131 73-216 19-162 (275)
258 TIGR01290 nifB nitrogenase cof 38.9 3.4E+02 0.0074 25.7 10.3 111 141-259 59-200 (442)
259 TIGR03699 mena_SCO4550 menaqui 38.9 2.9E+02 0.0064 24.8 12.3 128 72-216 72-223 (340)
260 TIGR01860 VNFD nitrogenase van 38.9 3.3E+02 0.0072 25.9 10.3 114 93-221 103-232 (461)
261 cd06311 PBP1_ABC_sugar_binding 38.9 2.4E+02 0.0052 23.8 10.0 75 144-221 14-90 (274)
262 COG2256 MGS1 ATPase related to 38.5 2.9E+02 0.0063 26.1 9.3 103 80-202 38-143 (436)
263 PLN02224 methionine-tRNA ligas 38.3 1.9E+02 0.0041 28.9 8.7 103 86-192 67-183 (616)
264 PRK12558 glutamyl-tRNA synthet 38.2 1.5E+02 0.0032 28.3 7.6 68 142-216 48-115 (445)
265 COG2987 HutU Urocanate hydrata 37.9 77 0.0017 30.2 5.5 107 110-227 151-268 (561)
266 PRK01492 rnpA ribonuclease P; 37.8 1.7E+02 0.0037 22.3 6.7 60 126-187 47-114 (118)
267 cd00954 NAL N-Acetylneuraminic 37.7 2.9E+02 0.0062 24.3 13.5 135 70-209 16-175 (288)
268 PF01297 TroA: Periplasmic sol 37.6 1.7E+02 0.0038 25.0 7.6 48 201-255 184-231 (256)
269 TIGR02026 BchE magnesium-proto 37.6 2.2E+02 0.0047 27.4 8.9 109 142-255 222-345 (497)
270 COG0145 HyuA N-methylhydantoin 37.5 2.5E+02 0.0054 28.4 9.4 91 70-172 134-242 (674)
271 COG5310 Homospermidine synthas 37.5 1.7E+02 0.0036 27.0 7.4 144 79-251 51-211 (481)
272 PRK08776 cystathionine gamma-s 37.3 3.5E+02 0.0075 25.2 10.9 18 204-221 163-180 (405)
273 smart00812 Alpha_L_fucos Alpha 37.0 98 0.0021 28.8 6.2 32 223-254 115-149 (384)
274 PF05378 Hydant_A_N: Hydantoin 36.9 68 0.0015 26.3 4.6 23 176-199 133-155 (176)
275 PF00762 Ferrochelatase: Ferro 36.8 2E+02 0.0043 26.0 8.0 91 144-258 206-300 (316)
276 COG0731 Fe-S oxidoreductases [ 36.8 3.2E+02 0.0069 24.6 9.5 163 35-224 13-209 (296)
277 PRK11864 2-ketoisovalerate fer 36.7 2.7E+02 0.0058 25.1 8.7 117 78-213 161-286 (300)
278 PRK00507 deoxyribose-phosphate 36.7 2.7E+02 0.0058 23.7 15.9 156 72-252 19-185 (221)
279 PF01175 Urocanase: Urocanase; 36.7 1.3E+02 0.0028 29.2 6.8 99 112-227 142-258 (546)
280 TIGR01284 alt_nitrog_alph nitr 36.6 3.8E+02 0.0083 25.5 11.1 105 110-220 109-229 (457)
281 KOG1321 Protoheme ferro-lyase 36.6 71 0.0015 29.1 4.9 63 179-244 142-211 (395)
282 PLN02591 tryptophan synthase 36.5 2.9E+02 0.0063 24.1 10.6 71 177-253 64-138 (250)
283 PRK07535 methyltetrahydrofolat 36.3 3E+02 0.0064 24.1 9.5 108 79-201 80-200 (261)
284 PRK10508 hypothetical protein; 36.3 52 0.0011 30.0 4.2 43 142-188 286-328 (333)
285 COG1560 HtrB Lauroyl/myristoyl 36.2 3.3E+02 0.0071 24.6 9.7 85 77-191 111-195 (308)
286 TIGR01496 DHPS dihydropteroate 36.2 2.9E+02 0.0063 24.0 11.7 107 79-201 86-207 (257)
287 TIGR02637 RhaS rhamnose ABC tr 36.0 2.9E+02 0.0062 23.9 10.6 75 144-222 13-87 (302)
288 TIGR01163 rpe ribulose-phospha 35.8 2.4E+02 0.0053 23.0 8.5 23 143-166 9-31 (210)
289 TIGR00188 rnpA ribonuclease P 35.7 1.6E+02 0.0036 21.7 6.2 58 126-186 42-103 (105)
290 TIGR00542 hxl6Piso_put hexulos 35.6 1.5E+02 0.0033 25.7 7.0 100 154-255 24-154 (279)
291 PRK09061 D-glutamate deacylase 35.6 4.1E+02 0.009 25.6 12.1 116 75-201 169-286 (509)
292 TIGR00126 deoC deoxyribose-pho 35.6 2.3E+02 0.005 24.0 7.8 75 74-163 131-206 (211)
293 PRK06552 keto-hydroxyglutarate 35.6 2E+02 0.0043 24.4 7.4 88 143-251 23-114 (213)
294 cd01320 ADA Adenosine deaminas 35.4 3.2E+02 0.0069 24.2 11.5 111 142-253 66-193 (325)
295 COG2109 BtuR ATP:corrinoid ade 35.4 2.3E+02 0.005 23.8 7.4 120 75-210 43-174 (198)
296 TIGR01212 radical SAM protein, 35.4 3.2E+02 0.007 24.3 14.2 77 139-218 88-178 (302)
297 PRK01732 rnpA ribonuclease P; 35.4 1.9E+02 0.0042 21.8 6.6 60 126-188 46-110 (114)
298 cd07948 DRE_TIM_HCS Saccharomy 35.3 3.1E+02 0.0066 24.0 10.3 102 142-253 19-132 (262)
299 CHL00040 rbcL ribulose-1,5-bis 35.2 3.1E+02 0.0067 26.5 9.3 125 127-257 166-299 (475)
300 PF13289 SIR2_2: SIR2-like dom 35.2 1.4E+02 0.0031 22.5 6.1 70 177-250 74-143 (143)
301 PRK00396 rnpA ribonuclease P; 35.2 1.9E+02 0.0041 22.5 6.6 60 126-188 47-111 (130)
302 PRK04820 rnpA ribonuclease P; 35.2 2E+02 0.0043 22.9 6.9 62 126-189 49-114 (145)
303 PF14871 GHL6: Hypothetical gl 35.1 32 0.0007 26.9 2.3 20 237-256 48-67 (132)
304 PRK08195 4-hyroxy-2-oxovalerat 35.1 3.5E+02 0.0076 24.6 18.0 24 72-95 22-45 (337)
305 PRK10826 2-deoxyglucose-6-phos 35.1 1.2E+02 0.0026 25.3 6.0 36 175-211 93-128 (222)
306 PLN03228 methylthioalkylmalate 35.0 2.4E+02 0.0051 27.4 8.6 107 142-254 103-230 (503)
307 TIGR03234 OH-pyruv-isom hydrox 35.0 2.8E+02 0.0061 23.5 9.6 97 147-251 16-141 (254)
308 PRK07764 DNA polymerase III su 34.8 1.8E+02 0.0039 30.1 8.1 97 143-249 101-199 (824)
309 PF00155 Aminotran_1_2: Aminot 34.8 2.1E+02 0.0046 25.5 8.1 97 150-251 80-186 (363)
310 cd06593 GH31_xylosidase_YicI Y 34.8 1.2E+02 0.0027 26.9 6.3 54 200-253 21-86 (308)
311 PRK10200 putative racemase; Pr 34.7 2.6E+02 0.0057 23.8 8.1 63 142-205 14-89 (230)
312 cd04734 OYE_like_3_FMN Old yel 34.6 3.6E+02 0.0077 24.6 14.2 81 127-211 207-306 (343)
313 TIGR03586 PseI pseudaminic aci 34.5 3.6E+02 0.0078 24.6 12.4 133 73-229 75-226 (327)
314 cd00019 AP2Ec AP endonuclease 34.4 3E+02 0.0065 23.8 8.7 19 204-222 86-104 (279)
315 TIGR02932 vnfK_nitrog V-contai 34.4 4.2E+02 0.009 25.3 10.2 116 94-222 67-198 (457)
316 PRK13011 formyltetrahydrofolat 34.0 3.4E+02 0.0073 24.1 14.5 142 76-253 20-172 (286)
317 cd00812 LeuRS_core catalytic c 34.0 1.9E+02 0.004 26.0 7.4 46 145-192 69-116 (314)
318 KOG3086 Predicted dioxygenase 33.9 61 0.0013 28.3 3.9 30 109-139 163-192 (296)
319 PRK10550 tRNA-dihydrouridine s 33.9 3.5E+02 0.0077 24.3 12.7 129 74-211 74-215 (312)
320 PRK05660 HemN family oxidoredu 33.8 3.8E+02 0.0083 24.7 12.9 42 175-216 141-187 (378)
321 KOG3131 Uncharacterized conser 33.7 3.3E+02 0.0071 23.9 9.1 112 126-257 25-150 (281)
322 cd06316 PBP1_ABC_sugar_binding 33.6 3.1E+02 0.0067 23.5 9.1 75 144-223 14-88 (294)
323 cd06598 GH31_transferase_CtsZ 33.6 1.1E+02 0.0024 27.5 5.9 53 201-253 22-90 (317)
324 COG0422 ThiC Thiamine biosynth 33.6 3.3E+02 0.0072 25.5 8.7 101 141-254 137-265 (432)
325 PRK04147 N-acetylneuraminate l 33.4 3.3E+02 0.0071 24.0 8.8 114 141-260 20-145 (293)
326 PRK12581 oxaloacetate decarbox 33.2 1.4E+02 0.0031 28.7 6.6 22 195-216 97-118 (468)
327 TIGR03821 AblA_like_1 lysine-2 33.1 3.7E+02 0.008 24.3 11.1 96 163-259 143-246 (321)
328 PF00072 Response_reg: Respons 33.1 1.2E+02 0.0027 21.4 5.2 53 156-210 37-91 (112)
329 PRK15458 tagatose 6-phosphate 33.1 56 0.0012 30.8 3.8 52 44-97 78-131 (426)
330 KOG0996 Structural maintenance 33.0 32 0.0007 36.3 2.4 75 176-256 599-675 (1293)
331 TIGR02814 pfaD_fam PfaD family 32.9 2.3E+02 0.005 27.0 8.0 71 181-253 34-107 (444)
332 PF07894 DUF1669: Protein of u 32.9 3.4E+02 0.0074 24.2 8.6 67 175-250 134-201 (284)
333 PRK06256 biotin synthase; Vali 32.6 3.7E+02 0.008 24.1 11.7 125 72-216 91-229 (336)
334 PRK05660 HemN family oxidoredu 32.5 3E+02 0.0065 25.4 8.7 61 140-202 169-243 (378)
335 PF01261 AP_endonuc_2: Xylose 32.5 1.5E+02 0.0032 23.9 6.1 15 237-251 116-130 (213)
336 TIGR02810 agaZ_gatZ D-tagatose 32.3 61 0.0013 30.5 3.9 52 44-97 74-127 (420)
337 TIGR01093 aroD 3-dehydroquinat 32.1 3.1E+02 0.0068 23.2 10.7 68 142-216 75-148 (228)
338 cd06595 GH31_xylosidase_XylS-l 32.1 1.4E+02 0.003 26.5 6.2 54 200-253 22-94 (292)
339 PRK10415 tRNA-dihydrouridine s 32.0 3.8E+02 0.0083 24.1 12.0 130 74-211 76-215 (321)
340 cd06597 GH31_transferase_CtsY 31.9 1.4E+02 0.0031 27.2 6.3 52 201-252 22-104 (340)
341 PF03796 DnaB_C: DnaB-like hel 31.8 2.5E+02 0.0054 24.1 7.7 23 237-259 161-183 (259)
342 TIGR00542 hxl6Piso_put hexulos 31.6 3.4E+02 0.0074 23.4 11.7 21 77-97 18-38 (279)
343 COG4555 NatA ABC-type Na+ tran 31.6 2.3E+02 0.0049 24.4 6.8 68 141-210 104-201 (245)
344 PRK05628 coproporphyrinogen II 31.5 3.6E+02 0.0079 24.7 9.1 89 73-201 142-247 (375)
345 TIGR00238 KamA family protein. 31.5 4E+02 0.0086 24.1 10.8 82 177-259 176-263 (331)
346 TIGR02666 moaA molybdenum cofa 31.5 2.6E+02 0.0057 25.0 8.0 75 182-258 104-196 (334)
347 PLN02489 homocysteine S-methyl 31.5 4E+02 0.0087 24.2 16.5 174 74-253 54-274 (335)
348 PF04748 Polysacc_deac_2: Dive 31.5 3.2E+02 0.007 23.1 9.3 129 72-217 71-203 (213)
349 cd00950 DHDPS Dihydrodipicolin 31.5 3.5E+02 0.0076 23.5 9.7 112 141-259 17-140 (284)
350 PRK06294 coproporphyrinogen II 31.2 3.5E+02 0.0075 24.9 8.9 60 140-201 165-242 (370)
351 cd01948 EAL EAL domain. This d 31.1 3E+02 0.0065 22.6 8.6 101 144-253 97-209 (240)
352 COG1121 ZnuC ABC-type Mn/Zn tr 31.0 2.2E+02 0.0048 24.9 7.1 46 161-208 156-205 (254)
353 TIGR03772 anch_rpt_subst ancho 31.0 4E+02 0.0086 25.7 9.3 46 201-251 405-450 (479)
354 KOG0059 Lipid exporter ABCA1 a 31.0 2.1E+02 0.0045 29.9 7.9 69 141-211 669-767 (885)
355 PF07994 NAD_binding_5: Myo-in 30.2 4E+02 0.0088 23.9 8.8 95 144-251 131-230 (295)
356 cd08585 GDPD_like_3 Glyceropho 30.1 3.5E+02 0.0075 23.1 9.4 18 237-254 199-217 (237)
357 PRK09989 hypothetical protein; 30.1 2.5E+02 0.0054 24.0 7.4 95 153-250 22-141 (258)
358 PRK15052 D-tagatose-1,6-bispho 30.0 68 0.0015 30.2 3.8 52 44-97 75-128 (421)
359 KOG4175 Tryptophan synthase al 30.0 3.5E+02 0.0076 23.1 9.0 103 149-251 3-153 (268)
360 PRK00915 2-isopropylmalate syn 29.8 3.8E+02 0.0082 26.0 9.1 69 142-216 23-92 (513)
361 TIGR02660 nifV_homocitr homoci 29.8 4.3E+02 0.0093 24.2 9.2 92 148-250 25-130 (365)
362 PRK04132 replication factor C 29.7 2.6E+02 0.0055 29.1 8.2 96 143-248 609-708 (846)
363 PF02426 MIase: Muconolactone 29.7 2.2E+02 0.0049 20.7 6.2 49 180-233 28-88 (91)
364 PF06415 iPGM_N: BPG-independe 29.6 2.7E+02 0.0058 24.0 7.1 27 205-231 83-110 (223)
365 cd08568 GDPD_TmGDE_like Glycer 29.6 1.8E+02 0.0039 24.5 6.2 20 75-94 14-33 (226)
366 PRK04147 N-acetylneuraminate l 29.6 3.9E+02 0.0085 23.5 12.6 132 70-209 19-177 (293)
367 COG2179 Predicted hydrolase of 29.5 2.9E+02 0.0063 22.8 6.9 56 154-210 22-81 (175)
368 COG3693 XynA Beta-1,4-xylanase 29.4 4.5E+02 0.0097 24.1 9.2 86 142-230 168-264 (345)
369 cd04740 DHOD_1B_like Dihydroor 29.4 3.9E+02 0.0085 23.4 14.1 158 74-247 101-286 (296)
370 PRK05301 pyrroloquinoline quin 29.2 4.5E+02 0.0097 24.0 14.0 128 71-218 45-184 (378)
371 TIGR01918 various_sel_PB selen 29.1 1.7E+02 0.0038 27.6 6.3 74 180-255 289-373 (431)
372 TIGR02090 LEU1_arch isopropylm 29.1 4.6E+02 0.0099 24.1 12.9 24 73-96 20-43 (363)
373 cd01306 PhnM PhnM is believed 29.1 82 0.0018 28.6 4.2 26 75-100 27-53 (325)
374 PRK07379 coproporphyrinogen II 29.0 3.7E+02 0.0079 25.0 8.7 88 73-200 149-253 (400)
375 PRK01222 N-(5'-phosphoribosyl) 29.0 1.7E+02 0.0038 24.6 6.0 49 142-200 64-112 (210)
376 COG0646 MetH Methionine syntha 28.9 2.8E+02 0.0061 25.0 7.3 64 149-213 233-310 (311)
377 COG4152 ABC-type uncharacteriz 28.9 4.2E+02 0.009 23.6 8.3 69 141-211 101-199 (300)
378 COG4108 PrfC Peptide chain rel 28.8 92 0.002 29.8 4.4 65 185-252 38-139 (528)
379 PRK00588 rnpA ribonuclease P; 28.7 2.4E+02 0.0051 21.5 6.1 61 125-188 43-108 (118)
380 PRK00507 deoxyribose-phosphate 28.7 3E+02 0.0065 23.5 7.4 26 74-99 135-160 (221)
381 TIGR03700 mena_SCO4494 putativ 28.6 4.5E+02 0.0098 23.9 10.1 47 142-190 79-125 (351)
382 PF00578 AhpC-TSA: AhpC/TSA fa 28.6 1.9E+02 0.0041 21.1 5.7 57 155-211 20-79 (124)
383 PF01118 Semialdhyde_dh: Semia 28.5 62 0.0013 24.4 2.9 27 74-100 76-102 (121)
384 COG1751 Uncharacterized conser 28.4 2.5E+02 0.0053 22.9 6.2 73 74-161 13-85 (186)
385 PRK13209 L-xylulose 5-phosphat 28.4 3.9E+02 0.0084 23.0 10.8 11 156-166 31-41 (283)
386 TIGR00036 dapB dihydrodipicoli 28.4 3.2E+02 0.007 23.8 7.8 53 162-218 68-120 (266)
387 PRK08208 coproporphyrinogen II 28.3 5E+02 0.011 24.3 13.2 68 149-216 141-221 (430)
388 cd08583 PI-PLCc_GDPD_SF_unchar 28.1 3.7E+02 0.008 22.7 11.7 18 237-254 196-213 (237)
389 TIGR01501 MthylAspMutase methy 28.1 2.9E+02 0.0064 21.6 8.4 91 148-247 18-111 (134)
390 PLN02610 probable methionyl-tR 28.1 2.9E+02 0.0062 28.6 8.3 46 146-193 88-133 (801)
391 cd06320 PBP1_allose_binding Pe 28.1 3.6E+02 0.0079 22.6 10.3 15 237-251 143-158 (275)
392 PRK07114 keto-hydroxyglutarate 28.0 2.3E+02 0.0049 24.3 6.5 92 142-251 24-117 (222)
393 cd06591 GH31_xylosidase_XylS X 28.0 1.6E+02 0.0034 26.5 5.9 53 201-253 22-86 (319)
394 cd01971 Nitrogenase_VnfN_like 28.0 4.5E+02 0.0097 24.6 9.2 106 110-222 71-192 (427)
395 PRK10426 alpha-glucosidase; Pr 28.0 3.1E+02 0.0066 27.5 8.3 87 161-253 175-289 (635)
396 PRK14847 hypothetical protein; 27.7 4E+02 0.0088 24.3 8.4 109 142-256 51-180 (333)
397 KOG0053 Cystathionine beta-lya 27.6 2E+02 0.0044 27.0 6.5 58 201-259 148-205 (409)
398 PRK06233 hypothetical protein; 27.6 1.6E+02 0.0034 27.2 5.9 75 112-200 225-307 (372)
399 COG1167 ARO8 Transcriptional r 27.3 5.4E+02 0.012 24.4 11.0 147 73-251 105-265 (459)
400 PF14606 Lipase_GDSL_3: GDSL-l 27.2 3E+02 0.0066 22.7 6.9 77 99-190 43-135 (178)
401 PLN02231 alanine transaminase 27.2 5.9E+02 0.013 24.8 11.4 49 176-224 255-312 (534)
402 cd06306 PBP1_TorT-like TorT-li 27.1 3.8E+02 0.0083 22.6 10.3 74 144-222 14-87 (268)
403 cd00338 Ser_Recombinase Serine 27.1 1.4E+02 0.0029 22.6 4.7 42 149-190 52-95 (137)
404 cd06594 GH31_glucosidase_YihQ 27.0 1.5E+02 0.0033 26.7 5.6 53 201-253 21-91 (317)
405 cd08573 GDPD_GDE1 Glycerophosp 27.0 1.7E+02 0.0037 25.3 5.8 18 237-254 219-236 (258)
406 cd00452 KDPG_aldolase KDPG and 26.9 3.5E+02 0.0076 22.1 13.0 102 73-210 14-115 (190)
407 cd08562 GDPD_EcUgpQ_like Glyce 26.9 3.7E+02 0.008 22.3 12.5 18 237-254 190-207 (229)
408 PF03599 CdhD: CO dehydrogenas 26.8 2.4E+02 0.0052 26.4 6.8 85 162-255 69-153 (386)
409 cd06602 GH31_MGAM_SI_GAA This 26.8 1.8E+02 0.0038 26.5 6.0 53 201-253 22-86 (339)
410 PRK14469 ribosomal RNA large s 26.8 4.9E+02 0.011 23.7 11.0 80 175-256 233-324 (343)
411 KOG2367 Alpha-isopropylmalate 26.7 6E+02 0.013 24.7 10.8 131 69-214 198-332 (560)
412 TIGR02026 BchE magnesium-proto 26.5 5.8E+02 0.013 24.5 11.8 71 181-252 288-372 (497)
413 cd08561 GDPD_cytoplasmic_ScUgp 26.5 2.6E+02 0.0056 23.8 6.8 77 178-254 119-220 (249)
414 cd08556 GDPD Glycerophosphodie 26.4 3.3E+02 0.0071 21.6 13.6 155 75-254 13-168 (189)
415 PF05049 IIGP: Interferon-indu 26.3 1.9E+02 0.0042 26.9 6.1 61 109-173 129-201 (376)
416 cd03770 SR_TndX_transposase Se 26.2 1.3E+02 0.0029 23.3 4.5 40 150-189 56-97 (140)
417 TIGR03221 muco_delta muconolac 26.2 2.6E+02 0.0057 20.4 6.2 48 181-233 28-87 (90)
418 PF12816 Vps8: Golgi CORVET co 26.1 63 0.0014 27.0 2.7 31 179-214 4-34 (196)
419 cd07948 DRE_TIM_HCS Saccharomy 26.1 4.4E+02 0.0096 23.0 12.2 24 73-96 20-43 (262)
420 TIGR00433 bioB biotin syntheta 26.1 4.4E+02 0.0095 22.9 12.6 126 73-217 63-201 (296)
421 cd07938 DRE_TIM_HMGL 3-hydroxy 26.0 4.5E+02 0.0098 23.0 14.4 25 72-96 17-41 (274)
422 cd03326 MR_like_1 Mandelate ra 25.9 5.4E+02 0.012 23.9 12.6 152 74-248 161-313 (385)
423 TIGR00314 cdhA CO dehydrogenas 25.9 3.1E+02 0.0068 28.2 7.9 84 167-259 237-335 (784)
424 TIGR01282 nifD nitrogenase mol 25.8 5.9E+02 0.013 24.3 9.9 104 110-220 116-237 (466)
425 PRK12581 oxaloacetate decarbox 25.8 6.1E+02 0.013 24.4 15.8 157 74-247 104-263 (468)
426 TIGR03569 NeuB_NnaB N-acetylne 25.5 5.2E+02 0.011 23.5 13.0 135 72-228 73-226 (329)
427 PF10923 DUF2791: P-loop Domai 25.4 1.5E+02 0.0032 28.1 5.3 69 45-136 16-84 (416)
428 CHL00200 trpA tryptophan synth 25.4 4.6E+02 0.01 23.0 10.3 73 177-254 77-152 (263)
429 TIGR03821 AblA_like_1 lysine-2 25.4 5E+02 0.011 23.4 13.7 133 74-219 127-267 (321)
430 PF05378 Hydant_A_N: Hydantoin 25.4 2.5E+02 0.0054 22.9 6.1 49 197-246 128-176 (176)
431 PF00701 DHDPS: Dihydrodipicol 25.2 4.6E+02 0.01 22.9 10.6 112 141-259 18-141 (289)
432 TIGR03705 poly_P_kin polyphosp 25.2 3.8E+02 0.0083 27.1 8.4 83 167-251 333-418 (672)
433 cd08557 PI-PLCc_bacteria_like 25.2 1.9E+02 0.0041 24.8 5.7 20 80-99 42-61 (271)
434 cd06312 PBP1_ABC_sugar_binding 25.1 4.1E+02 0.009 22.3 10.0 74 144-222 15-88 (271)
435 cd01137 PsaA Metal binding pro 25.1 4.2E+02 0.0091 23.3 8.0 42 201-249 211-252 (287)
436 KOG1579 Homocysteine S-methylt 25.0 5.2E+02 0.011 23.4 11.8 98 74-171 52-170 (317)
437 PRK13753 dihydropteroate synth 25.0 4.9E+02 0.011 23.1 10.5 100 142-255 22-128 (279)
438 COG2102 Predicted ATPases of P 25.0 4.5E+02 0.0097 22.6 7.8 74 176-260 75-149 (223)
439 cd08605 GDPD_GDE5_like_1_plant 24.9 1.6E+02 0.0036 25.7 5.3 18 237-254 241-258 (282)
440 cd02067 B12-binding B12 bindin 24.9 1.9E+02 0.0041 21.4 5.0 58 149-215 17-77 (119)
441 cd06592 GH31_glucosidase_KIAA1 24.9 2.2E+02 0.0049 25.3 6.2 16 237-252 74-89 (303)
442 PRK00941 acetyl-CoA decarbonyl 24.8 3.8E+02 0.0082 27.6 8.2 87 161-257 236-336 (781)
443 PRK08419 lipid A biosynthesis 24.8 4.8E+02 0.01 22.9 8.9 21 80-100 104-124 (298)
444 PLN02746 hydroxymethylglutaryl 24.7 5.5E+02 0.012 23.6 12.6 26 72-97 65-90 (347)
445 TIGR00973 leuA_bact 2-isopropy 24.7 6.4E+02 0.014 24.3 13.5 25 72-96 20-44 (494)
446 TIGR01329 cysta_beta_ly_E cyst 24.7 3.7E+02 0.0081 24.6 7.8 34 191-224 131-169 (378)
447 PRK08508 biotin synthase; Prov 24.6 4.8E+02 0.01 22.9 9.7 75 180-255 102-188 (279)
448 PF00491 Arginase: Arginase fa 24.6 2.3E+02 0.005 24.6 6.2 54 149-203 186-256 (277)
449 TIGR02090 LEU1_arch isopropylm 24.5 4.7E+02 0.01 24.0 8.5 63 142-210 19-82 (363)
450 PF01487 DHquinase_I: Type I 3 24.5 4.2E+02 0.0091 22.2 9.6 112 72-200 72-185 (224)
451 TIGR00973 leuA_bact 2-isopropy 24.5 4.4E+02 0.0095 25.4 8.5 56 151-211 28-84 (494)
452 COG3113 Predicted NTP binding 24.5 1.6E+02 0.0035 21.9 4.2 68 141-211 19-89 (99)
453 COG2089 SpsE Sialic acid synth 24.4 5.6E+02 0.012 23.5 12.4 60 183-245 140-205 (347)
454 cd06604 GH31_glucosidase_II_Ma 24.4 1.8E+02 0.004 26.3 5.7 52 201-252 22-83 (339)
455 PRK05742 nicotinate-nucleotide 24.3 2.6E+02 0.0056 24.8 6.4 21 238-258 246-266 (277)
456 cd02933 OYE_like_FMN Old yello 24.3 5.4E+02 0.012 23.3 12.3 15 80-94 157-171 (338)
457 PRK09856 fructoselysine 3-epim 24.2 4.5E+02 0.0098 22.4 13.2 20 76-95 14-33 (275)
458 PF08734 GYD: GYD domain; Int 24.2 2.8E+02 0.006 20.0 6.8 64 146-209 20-90 (91)
459 TIGR01286 nifK nitrogenase mol 24.2 5.3E+02 0.011 25.1 9.0 116 93-221 119-252 (515)
460 cd08564 GDPD_GsGDE_like Glycer 24.1 3.6E+02 0.0079 23.2 7.3 17 237-253 214-230 (265)
461 PRK07114 keto-hydroxyglutarate 24.1 4.6E+02 0.0099 22.4 7.7 39 73-119 25-63 (222)
462 PF01055 Glyco_hydro_31: Glyco 24.1 2.1E+02 0.0046 26.7 6.2 53 201-253 41-103 (441)
463 PRK00915 2-isopropylmalate syn 24.1 6.6E+02 0.014 24.3 14.2 24 73-96 24-47 (513)
464 PRK09456 ?-D-glucose-1-phospha 24.1 2.9E+02 0.0062 22.5 6.4 30 176-206 86-115 (199)
465 COG0076 GadB Glutamate decarbo 24.0 3.3E+02 0.0072 26.0 7.5 119 144-265 163-292 (460)
466 PRK04930 glutathione-regulated 24.0 4.1E+02 0.009 21.9 9.4 38 142-179 127-164 (184)
467 PRK08208 coproporphyrinogen II 24.0 6.1E+02 0.013 23.8 9.8 114 78-202 141-275 (430)
468 TIGR01549 HAD-SF-IA-v1 haloaci 24.0 3.3E+02 0.0072 20.8 6.7 68 177-248 67-134 (154)
469 PRK00454 engB GTP-binding prot 23.9 3.7E+02 0.0081 21.3 9.7 16 174-189 180-195 (196)
470 cd00668 Ile_Leu_Val_MetRS_core 23.9 1.1E+02 0.0024 27.2 4.1 48 144-194 81-131 (312)
471 PF04476 DUF556: Protein of un 23.9 4.8E+02 0.01 22.6 10.7 147 82-249 14-183 (235)
472 PRK14457 ribosomal RNA large s 23.8 5.7E+02 0.012 23.4 12.6 133 126-259 100-266 (345)
473 PRK08072 nicotinate-nucleotide 23.8 3.1E+02 0.0067 24.3 6.8 40 179-224 174-214 (277)
474 PRK06027 purU formyltetrahydro 23.7 5.2E+02 0.011 22.9 14.0 143 76-253 19-172 (286)
475 PRK10936 TMAO reductase system 23.7 5.3E+02 0.011 23.0 10.2 74 144-222 61-134 (343)
476 PF00388 PI-PLC-X: Phosphatidy 23.6 64 0.0014 25.2 2.2 22 79-100 30-51 (146)
477 COG2873 MET17 O-acetylhomoseri 23.5 4.9E+02 0.011 24.4 8.0 137 76-254 65-206 (426)
478 TIGR00676 fadh2 5,10-methylene 23.5 5E+02 0.011 22.7 14.0 159 75-260 15-193 (272)
479 PF00809 Pterin_bind: Pterin b 23.5 4.4E+02 0.0095 22.0 8.4 90 156-255 29-125 (210)
480 cd01293 Bact_CD Bacterial cyto 23.4 5.5E+02 0.012 23.1 13.5 18 76-93 97-114 (398)
481 PF00289 CPSase_L_chain: Carba 23.3 86 0.0019 23.6 2.8 89 146-253 12-106 (110)
482 PRK14477 bifunctional nitrogen 23.2 8.9E+02 0.019 25.5 11.1 111 93-219 89-213 (917)
483 cd00419 Ferrochelatase_C Ferro 23.2 3.6E+02 0.0078 20.9 9.4 96 113-211 7-112 (135)
484 PRK09701 D-allose transporter 23.1 5.1E+02 0.011 22.6 10.2 75 144-222 39-113 (311)
485 smart00481 POLIIIAc DNA polyme 23.1 1E+02 0.0023 20.3 2.9 44 204-251 16-59 (67)
486 PF15221 LEP503: Lens epitheli 23.1 51 0.0011 21.6 1.2 22 36-57 15-36 (61)
487 cd00405 PRAI Phosphoribosylant 23.0 2.9E+02 0.0063 22.7 6.3 66 156-227 16-82 (203)
488 cd06603 GH31_GANC_GANAB_alpha 23.0 2E+02 0.0044 26.0 5.6 53 201-253 22-84 (339)
489 TIGR03249 KdgD 5-dehydro-4-deo 22.9 5.3E+02 0.011 22.7 8.5 105 141-253 22-137 (296)
490 cd01916 ACS_1 Acetyl-CoA synth 22.9 3.2E+02 0.0069 27.9 7.3 85 166-257 203-299 (731)
491 PF10137 TIR-like: Predicted n 22.9 2.3E+02 0.005 21.9 5.1 19 238-256 44-62 (125)
492 PRK11858 aksA trans-homoaconit 22.9 6.1E+02 0.013 23.4 14.5 23 73-95 24-46 (378)
493 PF09989 DUF2229: CoA enzyme a 22.8 4.8E+02 0.01 22.2 8.7 34 218-252 185-218 (221)
494 PRK13015 3-dehydroquinate dehy 22.8 3.3E+02 0.0071 21.8 6.0 79 141-230 25-105 (146)
495 COG2949 SanA Uncharacterized m 22.7 1E+02 0.0022 26.3 3.3 99 145-254 76-181 (235)
496 TIGR03278 methan_mark_10 putat 22.7 6.4E+02 0.014 23.7 10.3 54 142-196 54-108 (404)
497 smart00052 EAL Putative diguan 22.7 4.3E+02 0.0094 21.7 8.4 100 145-253 99-210 (241)
498 PRK05443 polyphosphate kinase; 22.6 3.6E+02 0.0079 27.3 7.7 81 167-250 342-426 (691)
499 COG1082 IolE Sugar phosphate i 22.6 3.8E+02 0.0083 22.7 7.2 72 182-254 20-105 (274)
500 cd00466 DHQase_II Dehydroquina 22.5 3.1E+02 0.0066 21.8 5.7 79 141-230 23-103 (140)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.5e-53 Score=382.99 Aligned_cols=210 Identities=37% Similarity=0.585 Sum_probs=190.7
Q ss_pred ceeeEeCCCCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHH
Q 024292 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (269)
Q Consensus 36 m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~ 115 (269)
|++++||+||++||+||||||.||+. +.+.+.+++.++|++|+|+||||||||+.||.|.+ |++||+
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~-------~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~s------E~ilG~ 67 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGD-------TDDEEEAEAIEILDAALDAGINFFDTADVYGDGRS------EEILGE 67 (316)
T ss_pred CCceecCCCCceecceeeeccccCCC-------CCchhhhHHHHHHHHHHHcCCCEEECccccCCCch------HHHHHH
Confidence 78999999999999999999999874 22344568888999999999999999999999987 999999
Q ss_pred HHhhccCCCCCCcEEEEecCCCCC--------CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CChHHHHHHHHHH
Q 024292 116 FIKERKQRDPEVEVTVATKFAALP--------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDA 186 (269)
Q Consensus 116 al~~~~~~~~R~~v~I~tK~~~~~--------~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L~~l 186 (269)
||+.++. |++++|+||++..+ .+.++++|+++++.||+|||||||||||+||||+ .+.++++++|.+|
T Consensus 68 ~l~~~~~---Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l 144 (316)
T COG0667 68 ALKERGR---RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDEL 144 (316)
T ss_pred HHhccCC---CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 9999863 79999999998743 3468999999999999999999999999999998 7789999999999
Q ss_pred HHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCCcchhhhcc
Q 024292 187 VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAARL 266 (269)
Q Consensus 187 ~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~~~~~ 266 (269)
+++||||+||+||++++++.++.+.+ .+++++|.+||+++|+.+. +++++|+++||++++|+||++|+ |++|+
T Consensus 145 ~~~G~ir~iG~S~~~~~~i~~a~~~~----~~~~~~Q~~ynl~~R~~e~-~l~~~~~~~gi~~~~~spla~G~--Ltgk~ 217 (316)
T COG0667 145 VREGKIRYIGVSNYSAEQIAEALAVA----APIDSLQPEYNLLERDAEK-ELLPLCREEGIGLLAYSPLASGL--LTGKY 217 (316)
T ss_pred HHcCCeeEEEecCCCHHHHHHHHHhc----CCceeecccCccccccchh-HHHHHHHHcCCeEEEecCccccc--cCCCc
Confidence 99999999999999999999998874 4799999999999987765 49999999999999999999999 88876
Q ss_pred cc
Q 024292 267 KT 268 (269)
Q Consensus 267 ~~ 268 (269)
..
T Consensus 218 ~~ 219 (316)
T COG0667 218 LP 219 (316)
T ss_pred CC
Confidence 53
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1.1e-52 Score=372.66 Aligned_cols=218 Identities=37% Similarity=0.562 Sum_probs=197.9
Q ss_pred cccccceeeEeCCCCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchH
Q 024292 31 TVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSE 110 (269)
Q Consensus 31 ~~~~~m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE 110 (269)
+....|+++++|++|++||+||||||.+.. |+ .. .+++++++++++|+|+|+||||||++||++.+ |
T Consensus 7 ~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~---~~---~~-~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~------E 73 (336)
T KOG1575|consen 7 STELGMLRRKLGNSGLKVSPLGLGCMGWTT---FG---GQ-IDKEEAFELLDHAYEAGINFFDTAEVYGNGQS------E 73 (336)
T ss_pred cchhcceeeeccCCCceecceeecceeeec---cc---cC-CCHHHHHHHHHHHHHcCCCEEehhhhcCCccc------H
Confidence 334589999999999999999999973322 21 23 57899999999999999999999999999887 9
Q ss_pred HHHHHHHhhccCCCCCCcEEEEecCCCCC-----CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CChHHHHHHHH
Q 024292 111 TLLGRFIKERKQRDPEVEVTVATKFAALP-----WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLG 184 (269)
Q Consensus 111 ~~lG~al~~~~~~~~R~~v~I~tK~~~~~-----~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L~ 184 (269)
.++|++|++++. +|++|+|+||++... ++.++.++...++.|++|||+|||||||+||+|+ .|.+++|++|.
T Consensus 74 ~llg~~i~~~~~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~ 151 (336)
T KOG1575|consen 74 ELLGEFIKSRGW--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALT 151 (336)
T ss_pred HHHHHHHHhcCC--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHH
Confidence 999999999874 389999999998643 6678899999999999999999999999999998 78999999999
Q ss_pred HHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCCcchhhh
Q 024292 185 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAA 264 (269)
Q Consensus 185 ~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~~~ 264 (269)
+++++||||+||+|++++++|+++..+++ +||.++|++||++.|.+++.+++++|++.||++++|+||++|+ |++
T Consensus 152 ~lve~Gki~yiGlSe~sa~~I~~a~~~~~---~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~--Ltg 226 (336)
T KOG1575|consen 152 DLVEQGKIRYWGLSEWSAEEIREAHAVAP---IPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGL--LTG 226 (336)
T ss_pred HHHhcCceEEEEeccCCHHHHHHHHHhcC---CCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccce--ecc
Confidence 99999999999999999999999999864 6799999999999999888889999999999999999999999 898
Q ss_pred cccc
Q 024292 265 RLKT 268 (269)
Q Consensus 265 ~~~~ 268 (269)
|+++
T Consensus 227 k~~~ 230 (336)
T KOG1575|consen 227 KYKL 230 (336)
T ss_pred Cccc
Confidence 8875
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.4e-51 Score=359.01 Aligned_cols=197 Identities=35% Similarity=0.567 Sum_probs=176.6
Q ss_pred cceeeEeCCCCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHH
Q 024292 35 AEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLG 114 (269)
Q Consensus 35 ~m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG 114 (269)
++.+.+|++ |.+||.||||||++++. +.+.+.+.+|++.|+|+||||..||+ |+.+|
T Consensus 2 ~~~~~~l~~-g~~iP~iGlGt~~~~~~-------------~~~~~av~~Al~~Gyr~IDTA~~Ygn---------E~~VG 58 (280)
T COG0656 2 MKTKVTLNN-GVEIPAIGLGTWQIGDD-------------EWAVRAVRAALELGYRLIDTAEIYGN---------EEEVG 58 (280)
T ss_pred CCceeecCC-CCcccCcceEeeecCCc-------------hhHHHHHHHHHHhCcceEecHhHhcC---------HHHHH
Confidence 456788888 88899999999998764 34889999999999999999999998 99999
Q ss_pred HHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC--C-hHHHHHHHHHHHHcCC
Q 024292 115 RFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--G-NEGFIDGLGDAVEQGL 191 (269)
Q Consensus 115 ~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~--~-~~~~~~~L~~l~~~G~ 191 (269)
+++++.+ ++|+++||+||++. .+.+++.+.+++++||++||+||||||+||||.+. . ..++|++|++++++||
T Consensus 59 ~aI~~s~--v~ReelFittKvw~--~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ 134 (280)
T COG0656 59 EAIKESG--VPREELFITTKVWP--SDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGL 134 (280)
T ss_pred HHHHhcC--CCHHHeEEEeecCC--ccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCC
Confidence 9999944 46999999999976 56789999999999999999999999999999752 2 5799999999999999
Q ss_pred ccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCCcchhhh
Q 024292 192 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAA 264 (269)
Q Consensus 192 ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~~~ 264 (269)
||+||||||+.++++++++. .++.|+++|++|||+.++.+ ++++|+++||.+++||||++|..++.+
T Consensus 135 ir~IGVSNF~~~~L~~l~~~---~~~~p~~NQIe~hp~~~q~e---l~~~~~~~gI~v~AysPL~~g~~l~~~ 201 (280)
T COG0656 135 IRAIGVSNFGVEHLEELLSL---AKVKPAVNQIEYHPYLRQPE---LLPFCQRHGIAVEAYSPLAKGGKLLDN 201 (280)
T ss_pred ccEEEeeCCCHHHHHHHHHh---cCCCCceEEEEeccCCCcHH---HHHHHHHcCCEEEEECCcccccccccC
Confidence 99999999999999999886 34789999999999999886 999999999999999999976534443
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=4.7e-50 Score=365.57 Aligned_cols=214 Identities=29% Similarity=0.451 Sum_probs=186.2
Q ss_pred ccceeeEeCCCCcccccceecccc-cCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCC--CCCCCCCchH
Q 024292 34 TAEDKVKLGGSDLKVTKLGVGAWS-WGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS--RASFGAINSE 110 (269)
Q Consensus 34 ~~m~~~~lg~tg~~vs~lglG~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~--g~~~~~~~sE 110 (269)
+.|++|+||+||++||+||||||+ +|.. .+.+++.++|++|+++|||+||||+.||+ |.+ |
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~~g~~----------~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~s------E 74 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHNFGHV----------NALESQRAILRKAFDLGITHFDLANNYGPPPGSA------E 74 (346)
T ss_pred CCcceeecCCCCcccccccccCccccCCC----------CCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCc------H
Confidence 459999999999999999999996 4321 23577899999999999999999999995 776 9
Q ss_pred HHHHHHHhhccCCCCCCcEEEEecCCCC--C----CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CChHHHHHHH
Q 024292 111 TLLGRFIKERKQRDPEVEVTVATKFAAL--P----WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGL 183 (269)
Q Consensus 111 ~~lG~al~~~~~~~~R~~v~I~tK~~~~--~----~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L 183 (269)
+.+|++|++.... +|+++||+||+|.. + ...+++.+++++++||+|||+||||+|++|||++ .+.+++|++|
T Consensus 75 ~~lG~~l~~~~~~-~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al 153 (346)
T PRK09912 75 ENFGRLLREDFAA-YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASAL 153 (346)
T ss_pred HHHHHHHHhcccC-CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHH
Confidence 9999999864211 38999999998641 1 2357999999999999999999999999999986 5688999999
Q ss_pred HHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCCcchhh
Q 024292 184 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFA 263 (269)
Q Consensus 184 ~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~~ 263 (269)
++|+++||||+||||||++++++++.+.+...++++.++|++||++++..+..+++++|+++||++++|+||++|+ |+
T Consensus 154 ~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~--Lt 231 (346)
T PRK09912 154 AHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGL--LT 231 (346)
T ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCcc--cc
Confidence 9999999999999999999999999887766667889999999999987665569999999999999999999998 55
Q ss_pred hcc
Q 024292 264 ARL 266 (269)
Q Consensus 264 ~~~ 266 (269)
+++
T Consensus 232 ~~~ 234 (346)
T PRK09912 232 GKY 234 (346)
T ss_pred CCC
Confidence 544
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.4e-49 Score=358.57 Aligned_cols=210 Identities=25% Similarity=0.378 Sum_probs=182.6
Q ss_pred eeEeCCCCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHH
Q 024292 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (269)
Q Consensus 38 ~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al 117 (269)
||+||+||++||+||||||++.+. ..+.+++.++|+.|+++|||+||||+.||.|.| |+++|+||
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~---------~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~s------E~~lG~~l 65 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGG---------QISDEMAEQLLTLAYENGINLFDTAEVYAAGKA------EVVLGNIL 65 (317)
T ss_pred CcccCCCCCeecceeecCCccCCC---------CCCHHHHHHHHHHHHHcCCCeEECccccCCCcc------HHHHHHHH
Confidence 578999999999999999973221 135688999999999999999999999999887 99999999
Q ss_pred hhccCCCCCCcEEEEecCCCC-----CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CChHHHHHHHHHHHHcCC
Q 024292 118 KERKQRDPEVEVTVATKFAAL-----PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGL 191 (269)
Q Consensus 118 ~~~~~~~~R~~v~I~tK~~~~-----~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L~~l~~~G~ 191 (269)
+..+. +|+++||+||++.. ..+.+++.+++++++||+||||||||+|++|||++ .+.+++|++|++|+++||
T Consensus 66 ~~~~~--~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ 143 (317)
T TIGR01293 66 KKKGW--RRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGM 143 (317)
T ss_pred HhcCC--CcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCC
Confidence 96432 38999999998531 12467999999999999999999999999999986 567899999999999999
Q ss_pred ccEEEecCcCHHHHHHHHHHHHhcC-CCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCCcchhhhcc
Q 024292 192 VKAVGVSNYSEKRLRNAYEKLKKRG-IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAARL 266 (269)
Q Consensus 192 ir~iGvSn~~~~~l~~~~~~~~~~~-~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~~~~~ 266 (269)
||+||||||++++++++...+...+ ++++++|++||+++++..+.+++++|+++||++++|+||++|+ |++++
T Consensus 144 ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~--Ltg~~ 217 (317)
T TIGR01293 144 AMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGL--VSGKY 217 (317)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccc--cCCCC
Confidence 9999999999999999887766665 5789999999999987644469999999999999999999998 65554
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.3e-48 Score=356.20 Aligned_cols=208 Identities=27% Similarity=0.438 Sum_probs=181.6
Q ss_pred ceeeEeCCCCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCC-------CCCCCCCc
Q 024292 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS-------RASFGAIN 108 (269)
Q Consensus 36 m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-------g~~~~~~~ 108 (269)
|+|++||+||++||+||||||+||+. .+.+++.++|+.|+++||||||||+.||. |.+
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~----------~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~s----- 65 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQ----------NSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLT----- 65 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCC----------CCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCch-----
Confidence 78999999999999999999998753 34588999999999999999999999984 555
Q ss_pred hHHHHHHHHhhccCCCCCCcEEEEecCCCCC----------CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-----
Q 024292 109 SETLLGRFIKERKQRDPEVEVTVATKFAALP----------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----- 173 (269)
Q Consensus 109 sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~----------~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~----- 173 (269)
|+++|++|+..+ +|++++|+||++... ...+++.+++++++||+|||+||||||++|||+.
T Consensus 66 -E~~iG~aL~~~~---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~ 141 (346)
T PRK10625 66 -ETYIGNWLAKRG---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCF 141 (346)
T ss_pred -HHHHHHHHhhcC---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccc
Confidence 999999998643 389999999985311 1367999999999999999999999999999864
Q ss_pred -------------CChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCC-CeeEEcccCCccCCCcchhhHH
Q 024292 174 -------------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVK 239 (269)
Q Consensus 174 -------------~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~-~~~~~Q~~~s~~~~~~~~~~l~ 239 (269)
.+.+++|++|++|+++||||+||+|||+.++++++...+...+. .+.++|++||++++..+. +++
T Consensus 142 ~~~~~~~~~~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~-~ll 220 (346)
T PRK10625 142 GKLGYSWTDSAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEV-GLA 220 (346)
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchh-HHH
Confidence 24679999999999999999999999999999998877666554 488999999999987654 599
Q ss_pred HHHHHcCCeEEEcccccCCcchhhhc
Q 024292 240 AACDELGITLIAYCPIAQDSPIFAAR 265 (269)
Q Consensus 240 ~~~~~~gi~via~~pl~~G~l~~~~~ 265 (269)
++|+++||++++|+||++|+ |+++
T Consensus 221 ~~~~~~gi~via~spL~~G~--Ltg~ 244 (346)
T PRK10625 221 EVSQYEGVELLAYSCLAFGT--LTGK 244 (346)
T ss_pred HHHHHcCCeEEEeccccCee--ccCC
Confidence 99999999999999999998 5544
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=8.1e-48 Score=346.66 Aligned_cols=205 Identities=24% Similarity=0.344 Sum_probs=176.3
Q ss_pred eeEeCCCCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHH
Q 024292 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (269)
Q Consensus 38 ~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al 117 (269)
||+||+||++||.||||||+||+. | +..+.+++.+++++|++.|||+||||+.||+|.+ |+.+|++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~--~-----~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s------E~~lG~al 67 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSV--F-----GPVSEEDAIASVREAFRLGINFFDTSPYYGGTLS------EKVLGKAL 67 (314)
T ss_pred CCcCCCCCCcccCcccccccccCC--C-----CCCCHHHHHHHHHHHHHcCCCEEECcCccCCCch------HHHHHHHH
Confidence 688999999999999999998863 3 2356689999999999999999999999999887 99999999
Q ss_pred hhccCCCCCCcEEEEecCCCCC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC----CChHHHHHHHHHHHHcCC
Q 024292 118 KERKQRDPEVEVTVATKFAALP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGL 191 (269)
Q Consensus 118 ~~~~~~~~R~~v~I~tK~~~~~--~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~----~~~~~~~~~L~~l~~~G~ 191 (269)
++.+. +|+++||+||++..+ .+++++.+++++++||++||+||||+|++|||+. .+.+++|++|++|+++||
T Consensus 68 ~~~~~--~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gk 145 (314)
T PLN02587 68 KALGI--PREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGK 145 (314)
T ss_pred HhCCC--CcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCC
Confidence 97542 389999999997532 3578999999999999999999999999999964 235689999999999999
Q ss_pred ccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCCc
Q 024292 192 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDS 259 (269)
Q Consensus 192 ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G~ 259 (269)
||+||+|||++++++.+.+......+.+.++|+.||+.++..+ +++++|+++||++++|+||++|+
T Consensus 146 ir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~ll~~~~~~gi~v~a~spl~~G~ 211 (314)
T PLN02587 146 VRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLE--DLLPYLKSKGVGVISASPLAMGL 211 (314)
T ss_pred eEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHH--HHHHHHHHcCceEEEechhhccc
Confidence 9999999999999888776433222345567899999876443 69999999999999999999998
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=7.3e-46 Score=328.95 Aligned_cols=202 Identities=41% Similarity=0.664 Sum_probs=181.7
Q ss_pred eeEeCCCCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHH
Q 024292 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (269)
Q Consensus 38 ~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al 117 (269)
+++||+||++||+||||||.++.. + .+.+++.++++.|++.|||+||||+.||+|.+ |+.+|++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~-------~--~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~s------E~~lG~al 65 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGG-------Y--VDEEEAAAAVRAALDAGINFIDTADVYGDGES------EELLGEAL 65 (285)
T ss_pred CcccCCCCceecCcceeccccCCC-------C--CCHHHHHHHHHHHHHcCCCeEECccccCCCCC------HHHHHHHH
Confidence 578999999999999999988764 1 35689999999999999999999999999887 99999999
Q ss_pred hhccCCCCCCcEEEEecCCCCC---CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-C-hHHHHHHHHHHHHcCCc
Q 024292 118 KERKQRDPEVEVTVATKFAALP---WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-G-NEGFIDGLGDAVEQGLV 192 (269)
Q Consensus 118 ~~~~~~~~R~~v~I~tK~~~~~---~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~-~-~~~~~~~L~~l~~~G~i 192 (269)
+..+ +|++++|+||++... ...+++.+++++++||++|++||||+|++|+|+.. . ..++|++|++++++|+|
T Consensus 66 ~~~~---~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~i 142 (285)
T cd06660 66 KERG---PREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKI 142 (285)
T ss_pred hccC---CcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 9875 389999999998643 23689999999999999999999999999999873 2 78999999999999999
Q ss_pred cEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCCcch
Q 024292 193 KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPI 261 (269)
Q Consensus 193 r~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~ 261 (269)
|+||||||+++.++++++.+ ..+|+++|++||++++..+. +++++|+++||++++|+||++|.+.
T Consensus 143 r~iGvS~~~~~~l~~~~~~~---~~~~~~~q~~~n~~~~~~~~-~~~~~~~~~gi~v~~~~~l~~g~l~ 207 (285)
T cd06660 143 RAIGVSNFSAEQLEEALAAA---GVPPAVNQVEYNLLDRQAEE-ELLPYCREHGIGVIAYSPLAGGLLT 207 (285)
T ss_pred cEEEeeCCCHHHHHHHHHhh---CCCceEEecccCcccCchHH-HHHHHHHHcCcEEEEeccccCceec
Confidence 99999999999999997764 35899999999999998765 5999999999999999999999843
No 9
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.2e-46 Score=328.39 Aligned_cols=191 Identities=28% Similarity=0.448 Sum_probs=172.1
Q ss_pred eeEeCCCCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHH
Q 024292 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (269)
Q Consensus 38 ~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al 117 (269)
+.+|.+ |.+||.||||||+. +++++.+.++.|++.||||||||..|+| |+-+|++|
T Consensus 6 ~~~Ln~-G~~mP~iGlGTw~~--------------~~~~~~~aV~~Al~~GYRHIDtA~~Y~N---------E~evG~ai 61 (300)
T KOG1577|consen 6 TVKLNN-GFKMPIIGLGTWQS--------------PPGQVAEAVKAAIKAGYRHIDTAHVYGN---------EKEVGEAI 61 (300)
T ss_pred eEeccC-CCccceeeeEeccc--------------ChhhHHHHHHHHHHhCcceeechhhhCC---------hHHHHHHH
Confidence 678887 99999999999972 2378999999999999999999999999 99999999
Q ss_pred hhccC--CCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-----------------ChHH
Q 024292 118 KERKQ--RDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----------------GNEG 178 (269)
Q Consensus 118 ~~~~~--~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~-----------------~~~~ 178 (269)
++.-. .++|+++||+||+|. ....++.++.++++||++||+||||||++|||-.. +..+
T Consensus 62 k~~i~~~~v~RediFiTSKlw~--~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~ 139 (300)
T KOG1577|consen 62 KELLAEGGVKREDIFITSKLWP--TDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIE 139 (300)
T ss_pred HHHhhhCCcchhhheeeeccCc--cccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHH
Confidence 97632 247999999999975 45789999999999999999999999999999653 2468
Q ss_pred HHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCC
Q 024292 179 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQD 258 (269)
Q Consensus 179 ~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G 258 (269)
+|++|++++++|+||+||||||+..+|++++..+ .++|.++|+++||+.++.+ |+++|+++||.|.|||||+++
T Consensus 140 tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~---ki~P~vnQvE~HP~~~Q~~---L~~fCk~~~I~v~AYSpLg~~ 213 (300)
T KOG1577|consen 140 TWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLA---KIKPAVNQVECHPYLQQKK---LVEFCKSKGIVVTAYSPLGSP 213 (300)
T ss_pred HHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcC---CCCCccceeeccCCcChHH---HHHHHhhCCcEEEEecCCCCC
Confidence 9999999999999999999999999999998876 3899999999999988775 999999999999999999987
Q ss_pred cc
Q 024292 259 SP 260 (269)
Q Consensus 259 ~l 260 (269)
.-
T Consensus 214 ~~ 215 (300)
T KOG1577|consen 214 GR 215 (300)
T ss_pred CC
Confidence 63
No 10
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.4e-44 Score=322.14 Aligned_cols=197 Identities=23% Similarity=0.342 Sum_probs=169.5
Q ss_pred eeEeCCCCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHH
Q 024292 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (269)
Q Consensus 38 ~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al 117 (269)
+++|+ |++||+||||||++|+...|+. ..+++++.++++.|+++|||+||||+.||+|.+ |+++|+++
T Consensus 9 ~~~l~--g~~vs~iglG~~~lg~~~~~g~----~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~s------E~~lg~~l 76 (290)
T PRK10376 9 TFTLG--GRSVNRLGYGAMQLAGPGVFGP----PKDRDAAIAVLREAVALGVNHIDTSDFYGPHVT------NQLIREAL 76 (290)
T ss_pred ceecC--CeeecccceeccccCCCCcCCC----CCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcH------HHHHHHHH
Confidence 34554 8999999999999987533432 235688999999999999999999999999877 99999999
Q ss_pred hhccCCCCCCcEEEEecCCCC-------CCCCCHHHHHHHHHHHHHHhCCCccceEEeecC------CCCChHHHHHHHH
Q 024292 118 KERKQRDPEVEVTVATKFAAL-------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWA------GIWGNEGFIDGLG 184 (269)
Q Consensus 118 ~~~~~~~~R~~v~I~tK~~~~-------~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p------~~~~~~~~~~~L~ 184 (269)
+.. |+++||+||++.. +...+++.+++++++||+|||+||||+|++|++ +..+.+++|++|+
T Consensus 77 ~~~-----R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~ 151 (290)
T PRK10376 77 HPY-----PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLA 151 (290)
T ss_pred hcC-----CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHH
Confidence 642 7999999998642 235679999999999999999999999998874 2234689999999
Q ss_pred HHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCC
Q 024292 185 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQD 258 (269)
Q Consensus 185 ~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G 258 (269)
+|+++||||+||||||++++++++.+. .+++++|++||++++..+ +++++|+++||++++|+||+++
T Consensus 152 ~l~~~Gkir~iGvSn~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~--~~~~~~~~~gi~v~a~~pL~g~ 218 (290)
T PRK10376 152 ELQRQGLVRHIGLSNVTPTQVAEARKI-----AEIVCVQNHYNLAHRADD--ALIDALARDGIAYVPFFPLGGF 218 (290)
T ss_pred HHHHCCceeEEEecCCCHHHHHHHHhh-----CCeEEEecccCCCcCChH--HHHHHHHHcCCEEEEeecCCCC
Confidence 999999999999999999999998765 478999999999997643 5999999999999999999854
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.2e-44 Score=319.13 Aligned_cols=182 Identities=28% Similarity=0.468 Sum_probs=161.6
Q ss_pred cccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCC
Q 024292 46 LKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (269)
Q Consensus 46 ~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~ 125 (269)
.+||+||||||+++. +++.+++++|++.||||||||+.||+ |+.+|++|++.+. +
T Consensus 1 ~~vs~lglGt~~~~~--------------~~~~~~i~~A~~~Gi~~~DTA~~Yg~---------E~~lG~al~~~~~--~ 55 (267)
T PRK11172 1 MSIPAFGLGTFRLKD--------------QVVIDSVKTALELGYRAIDTAQIYDN---------EAAVGQAIAESGV--P 55 (267)
T ss_pred CCCCCEeeEccccCh--------------HHHHHHHHHHHHcCCCEEEccchhCC---------HHHHHHHHHHcCC--C
Confidence 369999999997642 57899999999999999999999996 9999999986532 3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC---CChHHHHHHHHHHHHcCCccEEEecCcCH
Q 024292 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (269)
Q Consensus 126 R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~---~~~~~~~~~L~~l~~~G~ir~iGvSn~~~ 202 (269)
|+++||+||++. ...+++.+++++++||+|||+||||+|++|||++ .+.+++|++|++|+++||||+||||||++
T Consensus 56 R~~v~i~TK~~~--~~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 133 (267)
T PRK11172 56 RDELFITTKIWI--DNLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTI 133 (267)
T ss_pred hhHeEEEEEeCC--CCCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCH
Confidence 899999999853 3578999999999999999999999999999975 45689999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCCcc
Q 024292 203 KRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSP 260 (269)
Q Consensus 203 ~~l~~~~~~~~~~~~-~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l 260 (269)
++++++++.+ +. +++++|++||++++.. +++++|+++||++++|+||++|.+
T Consensus 134 ~~l~~~~~~~---~~~~~~~~Q~~~~~~~~~~---~ll~~~~~~gi~v~a~spl~~G~~ 186 (267)
T PRK11172 134 ALMKQAIAAV---GAENIATNQIELSPYLQNR---KVVAFAKEHGIHVTSYMTLAYGKV 186 (267)
T ss_pred HHHHHHHHhc---CCCCCeEEeeecCCCCCcH---HHHHHHHHCCCEEEEECCCCCCcc
Confidence 9999987652 22 6899999999998752 599999999999999999999964
No 12
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=7.5e-45 Score=323.96 Aligned_cols=196 Identities=19% Similarity=0.224 Sum_probs=165.7
Q ss_pred CcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCC
Q 024292 45 DLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD 124 (269)
Q Consensus 45 g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~ 124 (269)
+++||+||||||+||+...|....+++++++++.++|+.|++.||||||||+.||. ||+++|++|+...
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--------SE~~lG~al~~~~--- 70 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGR--------AETVLGQLIPRPV--- 70 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhh--------HHHHHhhhhccCC---
Confidence 67899999999999863111111233567899999999999999999999999974 5999999997521
Q ss_pred CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CCh-HHHHHHHHHHHHcCCccEEEecCcC
Q 024292 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGN-EGFIDGLGDAVEQGLVKAVGVSNYS 201 (269)
Q Consensus 125 ~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~--~~~-~~~~~~L~~l~~~G~ir~iGvSn~~ 201 (269)
|++++|+||. ...+++.+++++++||+|||+||||+|++|+|+. .+. +++|++|++|+++||||+||||||+
T Consensus 71 -~~~~~i~tk~----~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 145 (292)
T PRK14863 71 -PFRVTLSTVR----ADRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHA 145 (292)
T ss_pred -ceEeeccccc----ccccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccC
Confidence 4679999985 2457899999999999999999999999999975 223 5789999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCCcch
Q 024292 202 EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPI 261 (269)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~ 261 (269)
++++.++.+. .+|+++|++||++++..+..+++++|+++||++++|+||++|+|.
T Consensus 146 ~~~~~~~~~~-----~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~ 200 (292)
T PRK14863 146 SDDPVGVARR-----FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLF 200 (292)
T ss_pred HHHHHHHHhc-----CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCcccc
Confidence 9888776432 589999999999999765336999999999999999999999853
No 13
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.8e-45 Score=308.35 Aligned_cols=207 Identities=21% Similarity=0.413 Sum_probs=189.1
Q ss_pred ceeeEeCCCCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHH
Q 024292 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (269)
Q Consensus 36 m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~ 115 (269)
|++.+|++.|+++|+|.+|+|++.. |+ ++.++....++.|+|.|||+||-|+.||.+.. |+++|+
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d---~~------~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~c------E~~fg~ 65 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND---WN------MSARELLSFIETALELGITTFDHADIYGGYQC------EALFGE 65 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh---cc------CCHHHHHHHHHHHHHcCcccchhhhhcCCccH------HHHHHH
Confidence 7899999999999999999999876 43 34478999999999999999999999999998 999999
Q ss_pred HHhhccCCCCCCcEEEEecCCCC----------CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CChHHHHHHHH
Q 024292 116 FIKERKQRDPEVEVTVATKFAAL----------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLG 184 (269)
Q Consensus 116 al~~~~~~~~R~~v~I~tK~~~~----------~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L~ 184 (269)
+|+-.+.- |+++.|.||+|.. .++++.++|..++|+||++|+|||+|+++||+||+ ++.+++-+++.
T Consensus 66 aL~l~p~l--RekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~ 143 (298)
T COG4989 66 ALKLAPGL--REKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFT 143 (298)
T ss_pred HHhcChhh--hhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHH
Confidence 99987753 8999999999962 25688999999999999999999999999999999 88999999999
Q ss_pred HHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCCcchh
Q 024292 185 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIF 262 (269)
Q Consensus 185 ~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l~~ 262 (269)
.|++.||||++|||||+|.+++-+.+... -++.+||++.|+++.....++.+++|+++.|.+++||||++|.++.
T Consensus 144 ~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~---~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~ 218 (298)
T COG4989 144 HLHKSGKVRHFGVSNFNPAQFELLQSRLP---FTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFL 218 (298)
T ss_pred HHHhcCCeeeeecCCCCHHHHHHHHHhcc---chhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCcccc
Confidence 99999999999999999999999877743 3579999999999998888899999999999999999999997555
No 14
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=3.3e-43 Score=311.66 Aligned_cols=190 Identities=35% Similarity=0.590 Sum_probs=160.8
Q ss_pred cceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcE
Q 024292 50 KLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEV 129 (269)
Q Consensus 50 ~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v 129 (269)
+||||||+++.. ..+.+++.++++.|++.|||+||||+.||+|.+ |+.+|++|++.+ .+|+++
T Consensus 1 ~l~lG~~~~~~~---------~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~s------E~~lg~~l~~~~--~~r~~~ 63 (283)
T PF00248_consen 1 PLGLGTWRLGGE---------RVSEEEAEAILRRALEAGINFFDTADSYGNGRS------ERILGRALRKSR--VPRDDI 63 (283)
T ss_dssp SBEEECTTBTTT---------TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTH------HHHHHHHHHHTS--STGGGS
T ss_pred CEEEEccccCCC---------CCCHHHHHHHHHHHHHcCCCeeccccccccccc------cccccccccccc--cccccc
Confidence 589999998763 367799999999999999999999999988887 999999999933 248999
Q ss_pred EEEecCC---CCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CC-hHHHHHHHHHHHHcCCccEEEecCcCHHH
Q 024292 130 TVATKFA---ALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (269)
Q Consensus 130 ~I~tK~~---~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~-~~-~~~~~~~L~~l~~~G~ir~iGvSn~~~~~ 204 (269)
+|+||+. ......+++.+++++++||++||+||||+|++|+|+. .. .+++|++|++|+++|+||+||||||+++.
T Consensus 64 ~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 143 (283)
T PF00248_consen 64 FISTKVYGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQ 143 (283)
T ss_dssp EEEEEEESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHH
T ss_pred cccccccccccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccc
Confidence 9999991 1235688999999999999999999999999999987 55 79999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCCcc
Q 024292 205 LRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSP 260 (269)
Q Consensus 205 l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l 260 (269)
++++ .+...++|+++|++||++++.... +++++|+++||++++|+||++|++
T Consensus 144 l~~~---~~~~~~~~~~~q~~~n~~~~~~~~-~l~~~~~~~gi~v~a~~~l~~G~l 195 (283)
T PF00248_consen 144 LEAA---LKIGSIPPDVVQINYNLLNRREEE-GLLEFCREHGIGVIAYSPLAGGLL 195 (283)
T ss_dssp HHHH---HTCTSS-ESEEEEE-BTTBHBGGH-HHHHHHHHTT-EEEEESTTGGGCG
T ss_pred cccc---cccccccccccccccccccccccc-cccccccccccccccccccccCcc
Confidence 9988 223336899999999999555544 699999999999999999999993
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=2e-42 Score=306.07 Aligned_cols=186 Identities=25% Similarity=0.394 Sum_probs=163.7
Q ss_pred eeEeCCCCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHH
Q 024292 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (269)
Q Consensus 38 ~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al 117 (269)
+..|. +|+.||+||||||+++ .+++.+++++|+++|+||||||+.||+ |+.+|++|
T Consensus 6 ~~~l~-~g~~v~~lglG~~~~~--------------~~~~~~~l~~A~~~Gi~~~DTA~~Yg~---------E~~lG~al 61 (275)
T PRK11565 6 VIKLQ-DGNVMPQLGLGVWQAS--------------NEEVITAIHKALEVGYRSIDTAAIYKN---------EEGVGKAL 61 (275)
T ss_pred eEEcC-CCCccCCcceECccCC--------------HHHHHHHHHHHHHhCCCEEEchhhhCC---------HHHHHHHH
Confidence 45564 6999999999999752 368999999999999999999999986 99999999
Q ss_pred hhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC--ChHHHHHHHHHHHHcCCccEE
Q 024292 118 KERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKAV 195 (269)
Q Consensus 118 ~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~--~~~~~~~~L~~l~~~G~ir~i 195 (269)
+..+. +|++++|+||++ ..+++.+++++++||++|++||||+|++|||++. +..++|++|++|+++|+||+|
T Consensus 62 ~~~~~--~R~~~~i~tK~~----~~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~i 135 (275)
T PRK11565 62 KEASV--AREELFITTKLW----NDDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSI 135 (275)
T ss_pred HHcCC--CHHHEEEEEEec----CcchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEE
Confidence 97542 389999999984 3467899999999999999999999999999762 367999999999999999999
Q ss_pred EecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCCc
Q 024292 196 GVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDS 259 (269)
Q Consensus 196 GvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G~ 259 (269)
|||||++++++++++. .++++.++|++||++.+.. +++++|+++||++++|+||++|.
T Consensus 136 GvSn~~~~~l~~~~~~---~~v~~~~~Q~~~~~~~~~~---~~~~~~~~~~i~~~a~spl~~G~ 193 (275)
T PRK11565 136 GVCNFQIHHLQRLIDE---TGVTPVINQIELHPLMQQR---QLHAWNATHKIQTESWSPLAQGG 193 (275)
T ss_pred eeccCCHHHHHHHHHh---CCCCceeeeeecCCccchH---HHHHHHHHCCCEEEEEccCCCCC
Confidence 9999999999988643 4467899999999998753 59999999999999999999774
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=7.9e-40 Score=289.11 Aligned_cols=205 Identities=20% Similarity=0.273 Sum_probs=178.9
Q ss_pred ceeeEeCCCCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHH
Q 024292 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (269)
Q Consensus 36 m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~ 115 (269)
|.||++++||.++|.||||||++... |. +.+|++.+.++|++|++.||||||||+.|..|.| |..+|+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~--~~----~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~s------E~~lgk 68 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLK--EQ----GSIDEENANETIDYAIEHGINYIDTAWPYHGGES------EEFLGK 68 (391)
T ss_pred CchhhcCCCCcccceeccceeecccc--cC----CCccHHHHHHHHHHHHHcCCceEeecccccCCCc------hHHHHH
Confidence 78999999999999999999998765 32 4567899999999999999999999999987777 999999
Q ss_pred HHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----hHHHHHHHHHHHHcC
Q 024292 116 FIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLGDAVEQG 190 (269)
Q Consensus 116 al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~-----~~~~~~~L~~l~~~G 190 (269)
+|++.. |++|+++||+..+ .--+++.+++-++++|++||+||+|+|+||..+... ..++++.++++|++|
T Consensus 69 aL~~~~----Rekv~LaTKlp~~-~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eG 143 (391)
T COG1453 69 ALKDGY----REKVKLATKLPSW-PVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEG 143 (391)
T ss_pred Hhhhcc----cceEEEEeecCCc-cccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcC
Confidence 999986 8999999999652 245789999999999999999999999999986511 234799999999999
Q ss_pred CccEEEecCc-CHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcch-hhHHHHHHHcCCeEEEcccccCCcchh
Q 024292 191 LVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-NGVKAACDELGITLIAYCPIAQDSPIF 262 (269)
Q Consensus 191 ~ir~iGvSn~-~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~-~~l~~~~~~~gi~via~~pl~~G~l~~ 262 (269)
|||++|+|.| +.+.+.+++.. .+++++|++||.++..... .+.+++|.++|++|+.++|+.+|-|+.
T Consensus 144 kIr~~GFSfHgs~e~~~~iv~a-----~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~ 212 (391)
T COG1453 144 KIRNAGFSFHGSTEVFKEIVDA-----YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLY 212 (391)
T ss_pred cEEEeeecCCCCHHHHHHHHhc-----CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCccc
Confidence 9999999999 56777777665 6899999999999975541 148999999999999999999998655
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=6.9e-39 Score=271.71 Aligned_cols=204 Identities=22% Similarity=0.301 Sum_probs=178.2
Q ss_pred cceeeEeCCCCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHH
Q 024292 35 AEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLG 114 (269)
Q Consensus 35 ~m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG 114 (269)
.|+||.+|+||++||+|+||...++.. +++.++++....+..|+..|||+|||++.||.+++ |+.+|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~-------fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~s------e~~lg 87 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQL-------FGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRS------EEGLG 87 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhh-------cCCcchhhhHHHHHHHHHccccceecCcccCcchh------HHHHH
Confidence 699999999999999999999998876 55567788888888899999999999999999998 99999
Q ss_pred HHHhhccCCCCCCcEEEEecCCCCC------CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----hHHHHHHH
Q 024292 115 RFIKERKQRDPEVEVTVATKFAALP------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGL 183 (269)
Q Consensus 115 ~al~~~~~~~~R~~v~I~tK~~~~~------~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~-----~~~~~~~L 183 (269)
.++++.+ |+.+||+||++... .+++++.+++++++||+||++||||++++|..+..+ ..|++.+|
T Consensus 88 ~al~~vP----R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~L 163 (342)
T KOG1576|consen 88 LALKDVP----REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPAL 163 (342)
T ss_pred HHHhhCC----hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHH
Confidence 9999986 99999999999632 578899999999999999999999999999977532 57999999
Q ss_pred HHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEc--ccCCccCCCcchhhHHHHHHHcCCeEEEcccccCCcc
Q 024292 184 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ--VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSP 260 (269)
Q Consensus 184 ~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q--~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l 260 (269)
+++|++||||+|||+.++.+.+.++++. .-..++++- ..|++.+..-. ..+++.+.+|++|+.-++++.|+|
T Consensus 164 e~lk~~Gk~RfiGitgypldvl~~~ae~---~~G~~dvvlsY~ry~l~d~tLl--~~~~~~~sk~vgVi~AsalsmgLL 237 (342)
T KOG1576|consen 164 EELKQEGKIRFIGITGYPLDVLTECAER---GKGRLDVVLSYCRYTLNDNTLL--RYLKRLKSKGVGVINASALSMGLL 237 (342)
T ss_pred HHHHhcCceeEeeecccchHHHHHHHhc---CCCceeeehhhhhhccccHHHH--HHHHHHHhcCceEEehhhHHHHHh
Confidence 9999999999999999999999998653 223567766 66666654333 478888999999999999999984
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.30 E-value=1.7e-06 Score=73.50 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcc
Q 024292 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 176 ~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~ 253 (269)
..+.|..||+++.+|+|..||||.|+..+++++++.++ +.|..+|++..=.+.-|. +|.++|..++|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saq---VvP~snqVnL~~cCvvPp--dLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQ---VVPESNQVNLGQCCVVPP--DLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhc---cccccceeeccccccCCH--HHHHHhhhcceeeeecC
Confidence 35789999999999999999999999999999998865 889999999988887666 59999999999999886
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.43 E-value=1.5 Score=39.50 Aligned_cols=157 Identities=12% Similarity=0.088 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~ 153 (269)
.++..+.++.+++.|++.|+.-- |.... ...+.+ +++++.- - ++-|.-+.. ..++.+...+- -+
T Consensus 135 ~~~~~~~~~~~~~~Gf~~iKik~--g~~~~----~d~~~v-~~lr~~~----g-~~~l~vD~n---~~~~~~~A~~~-~~ 198 (316)
T cd03319 135 PEAMAAAAKKAAKRGFPLLKIKL--GGDLE----DDIERI-RAIREAA----P-DARLRVDAN---QGWTPEEAVEL-LR 198 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEe--CCChh----hHHHHH-HHHHHhC----C-CCeEEEeCC---CCcCHHHHHHH-HH
Confidence 46667778888899999998742 32100 012233 3333321 1 455666653 24555443322 23
Q ss_pred HHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCC
Q 024292 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~ 232 (269)
.|+.+ ++.++..|- + .+-++.+.+|++.-.|. ..|=+-++.+.++++++. ..++++|+..+.+---
T Consensus 199 ~l~~~-----~l~~iEeP~--~-~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~-----~~~d~v~~~~~~~GGi 265 (316)
T cd03319 199 ELAEL-----GVELIEQPV--P-AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGG-----GAYDGINIKLMKTGGL 265 (316)
T ss_pred HHHhc-----CCCEEECCC--C-CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhc-----CCCCEEEEeccccCCH
Confidence 44444 445555553 2 23367788888887666 445555688888887654 3478888886654322
Q ss_pred cchhhHHHHHHHcCCeEEEcccccCCc
Q 024292 233 PEENGVKAACDELGITLIAYCPIAQDS 259 (269)
Q Consensus 233 ~~~~~l~~~~~~~gi~via~~pl~~G~ 259 (269)
.+-..+..+|+++|+.++..+-+..++
T Consensus 266 ~~~~~~~~~a~~~gi~~~~~~~~~~~i 292 (316)
T cd03319 266 TEALRIADLARAAGLKVMVGCMVESSL 292 (316)
T ss_pred HHHHHHHHHHHHcCCCEEEECchhhHH
Confidence 222258999999999999876655554
No 20
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=93.39 E-value=2.8 Score=36.64 Aligned_cols=158 Identities=11% Similarity=0.077 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~ 153 (269)
.++..+.++.+.+.|++.|-.-- |.... .-.+.+ +++++.- .+++-|.-... ..++.+...+-++
T Consensus 86 ~~~~~~~~~~~~~~G~~~~KiKv--g~~~~----~d~~~v-~~vr~~~----g~~~~l~vDan---~~~~~~~a~~~~~- 150 (265)
T cd03315 86 PAEVAEEARRALEAGFRTFKLKV--GRDPA----RDVAVV-AALREAV----GDDAELRVDAN---RGWTPKQAIRALR- 150 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEEec--CCCHH----HHHHHH-HHHHHhc----CCCCEEEEeCC---CCcCHHHHHHHHH-
Confidence 35666777888899999987532 21100 002233 3344332 13555554442 2355554443332
Q ss_pred HHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCC
Q 024292 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~ 232 (269)
.|+.+ ++.++..|-+ .+-++.+.+|++.-.+. ..|=+-++++.+.++++. ..++++|+..+...--
T Consensus 151 ~l~~~-----~i~~iEeP~~---~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~GGi 217 (265)
T cd03315 151 ALEDL-----GLDYVEQPLP---ADDLEGRAALARATDTPIMADESAFTPHDAFRELAL-----GAADAVNIKTAKTGGL 217 (265)
T ss_pred HHHhc-----CCCEEECCCC---cccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh-----CCCCEEEEecccccCH
Confidence 33343 4555666643 23367777888776555 445556688888887654 3578888887665432
Q ss_pred cchhhHHHHHHHcCCeEEEcccccCCc
Q 024292 233 PEENGVKAACDELGITLIAYCPIAQDS 259 (269)
Q Consensus 233 ~~~~~l~~~~~~~gi~via~~pl~~G~ 259 (269)
.+-..+.+.|+++|+.++..+.+..|+
T Consensus 218 ~~~~~~~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 218 TKAQRVLAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred HHHHHHHHHHHHcCCcEEecCccchHH
Confidence 222358999999999999987665554
No 21
>PRK08392 hypothetical protein; Provisional
Probab=93.08 E-value=4.9 Score=34.04 Aligned_cols=156 Identities=15% Similarity=0.216 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 024292 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (269)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL 155 (269)
...++++.|.+.|++.|=.+++...... ..=+..+-+ ++....+ .+-+|++..=++.. ++. .+..++.+
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~---~~~~~y~~~-i~~l~~~-~~i~il~GiE~~~~-----~~~-~~~~~~~~ 83 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTP---SKFNAYINE-IRQWGEE-SEIVVLAGIEANIT-----PNG-VDITDDFA 83 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccch---hhHHHHHHH-HHHHhhc-cCceEEEeEEeeec-----CCc-chhHHHHH
Confidence 4678899999999999977666532110 000122211 1122111 01233333333211 111 23333444
Q ss_pred HHhCCCccceEEee-cCCCCChHHHHHHHHHHHHcCCccEEEecC--------cCHHHHHHHHHHHHhcCCCeeEEcccC
Q 024292 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN--------YSEKRLRNAYEKLKKRGIPLASNQVNY 226 (269)
Q Consensus 156 ~~L~~dyiDl~~lH-~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn--------~~~~~l~~~~~~~~~~~~~~~~~Q~~~ 226 (269)
+ ..||+ +.-+| |++....+...+.+.++.+.+.+.-+|=-. ...+.++++++.+.+.|..+.+|- .+
T Consensus 84 ~--~~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt-~~ 159 (215)
T PRK08392 84 K--KLDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS-RY 159 (215)
T ss_pred h--hCCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-CC
Confidence 4 35666 67778 443333457788888888888877666211 123577888888888887777774 22
Q ss_pred CccCCCcchhhHHHHHHHcCCeEEE
Q 024292 227 SLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 227 s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
. .+.. .+++.|++.|+.++.
T Consensus 160 ~----~p~~-~~l~~~~~~G~~~~i 179 (215)
T PRK08392 160 R----VPDL-EFIRECIKRGIKLTF 179 (215)
T ss_pred C----CCCH-HHHHHHHHcCCEEEE
Confidence 1 2222 499999999987653
No 22
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=91.96 E-value=6.2 Score=36.00 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~ 153 (269)
.++..+.++.+.+.|++.|-.--..+...........+.+ +++++.- -+++.|..... ..++.+...+
T Consensus 140 ~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~----g~~~~l~vDaN---~~~~~~~a~~---- 207 (357)
T cd03316 140 PEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAV----GPDVDLMVDAN---GRWDLAEAIR---- 207 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhh----CCCCEEEEECC---CCCCHHHHHH----
Confidence 4666777788889999998753221110000000002333 3333321 14555666652 2455554433
Q ss_pred HHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCC
Q 024292 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~ 232 (269)
.+++|. -.++.+++.|-+ . +-++.+.+|++.-.+. ..+=|.++++.+.++++. ..++++|+.....---
T Consensus 208 ~~~~l~--~~~i~~iEqP~~--~-~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~GGi 277 (357)
T cd03316 208 LARALE--EYDLFWFEEPVP--P-DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEA-----GAVDIIQPDVTKVGGI 277 (357)
T ss_pred HHHHhC--ccCCCeEcCCCC--c-cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHh-----CCCCEEecCccccCCH
Confidence 333442 235566776643 2 3567788888875555 444556688888888664 3478888887654422
Q ss_pred cchhhHHHHHHHcCCeEEEccc
Q 024292 233 PEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 233 ~~~~~l~~~~~~~gi~via~~p 254 (269)
.+-..+.++|+++|+.++..+.
T Consensus 278 ~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 278 TEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHHcCCeEeccCC
Confidence 2222599999999999988764
No 23
>PRK07945 hypothetical protein; Provisional
Probab=91.40 E-value=11 Score=34.35 Aligned_cols=163 Identities=12% Similarity=0.051 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhh---ccCCCCCC-cEEEEecCCCCCCCCCHHHHHHH
Q 024292 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKE---RKQRDPEV-EVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~---~~~~~~R~-~v~I~tK~~~~~~~~~~~~i~~~ 150 (269)
....+++++|++.|+..|=.+++...... ....+..-+-+.++. ...+. ++ +|++.-=++..+ +...+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~-~~~~~~~~l~~y~~~i~~l~~ky-~~I~Il~GiE~d~~~-~g~~~~~--- 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTV-ANGLSAERLRKQLDVVAELNEEL-APFRILTGIEVDILD-DGSLDQE--- 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccC-CCCCCHHHHHHHHHHHHHHHHhc-CCceEEEEeEecccC-CCCcchh---
Confidence 34678999999999999877766533100 000012212122221 11111 12 233332222211 1212222
Q ss_pred HHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEec------C------cCHHHHHHHHHHHHhcCCC
Q 024292 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS------N------YSEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 151 l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS------n------~~~~~l~~~~~~~~~~~~~ 218 (269)
++.|+. .||+ +.-+|+....+.++..+.|.+..+.+++.-||=- + .....++++++.+.+.++.
T Consensus 185 -~~~l~~--~D~v-IgSvH~~~~~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~ 260 (335)
T PRK07945 185 -PELLDR--LDVV-VASVHSKLRMDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTA 260 (335)
T ss_pred -HHHHHh--CCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCE
Confidence 333333 5776 7788986555566777888888888888877722 1 1112346777778888877
Q ss_pred eeEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024292 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 219 ~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
+.+|-.... ..+.. .+++.|++.|+.++.
T Consensus 261 lEINt~~~r---~~P~~-~il~~a~e~G~~vti 289 (335)
T PRK07945 261 VEINSRPER---RDPPT-RLLRLALDAGCLFSI 289 (335)
T ss_pred EEEeCCCCC---CCChH-HHHHHHHHcCCeEEe
Confidence 777754332 22332 599999999998753
No 24
>PRK08609 hypothetical protein; Provisional
Probab=91.15 E-value=9.7 Score=37.39 Aligned_cols=161 Identities=14% Similarity=0.131 Sum_probs=91.2
Q ss_pred HHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHH---HhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024292 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRF---IKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 77 ~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~a---l~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~ 153 (269)
..++++.|.+.|+++|=.++++....- ....+...+-.. ++......+.=+|++..=+.. .++....-.++
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~-~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i-----~~~g~~d~~~~ 424 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKV-ANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDI-----LPDGSLDYDDE 424 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccc-cCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEee-----cCCcchhhcHH
Confidence 455999999999999988888632100 000012222222 222211111113343333322 22222333334
Q ss_pred HHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecC------c--CHHHHHHHHHHHHhcCCCeeEEccc
Q 024292 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN------Y--SEKRLRNAYEKLKKRGIPLASNQVN 225 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn------~--~~~~l~~~~~~~~~~~~~~~~~Q~~ 225 (269)
.|+. .||+ +.-+|++-..+.+++.+.+.++.+.|.+--||=-. + -...++++++.+...|+.+.+|-..
T Consensus 425 ~L~~--~D~v-I~SvH~~~~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lEINa~~ 501 (570)
T PRK08609 425 VLAE--LDYV-IAAIHSSFSQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALELNANP 501 (570)
T ss_pred HHHh--hCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEEEcCCc
Confidence 5554 5776 77889765456678889999999988877666222 1 1356777777777777555555433
Q ss_pred CCccCCCcchhhHHHHHHHcCCeEE
Q 024292 226 YSLIYRKPEENGVKAACDELGITLI 250 (269)
Q Consensus 226 ~s~~~~~~~~~~l~~~~~~~gi~vi 250 (269)
+ ..... ..++..|.+.|+.++
T Consensus 502 ~---r~~~~-~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 502 N---RLDLS-AEHLKKAQEAGVKLA 522 (570)
T ss_pred c---ccCcc-HHHHHHHHHcCCEEE
Confidence 2 22222 259999999999754
No 25
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.69 E-value=2 Score=39.96 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 024292 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (269)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL 155 (269)
....++++|++.|++++||+.+... +..+.+..+ +..+.+..-+|..| +.+--.....+++-.
T Consensus 80 ~~~~i~ka~i~~gv~yvDts~~~~~---------~~~~~~~a~-------~Agit~v~~~G~dP-Gi~nv~a~~a~~~~~ 142 (389)
T COG1748 80 VDLTILKACIKTGVDYVDTSYYEEP---------PWKLDEEAK-------KAGITAVLGCGFDP-GITNVLAAYAAKELF 142 (389)
T ss_pred hhHHHHHHHHHhCCCEEEcccCCch---------hhhhhHHHH-------HcCeEEEcccCcCc-chHHHHHHHHHHHhh
Confidence 4457999999999999999976654 333333333 24666666665422 333333333333332
Q ss_pred HHhCCCccceEEeecCCC
Q 024292 156 FRLGLSSVELYQLHWAGI 173 (269)
Q Consensus 156 ~~L~~dyiDl~~lH~p~~ 173 (269)
+ .+++||+|..+-|++
T Consensus 143 ~--~i~si~iy~g~~g~~ 158 (389)
T COG1748 143 D--EIESIDIYVGGLGEH 158 (389)
T ss_pred c--cccEEEEEEecCCCC
Confidence 2 589999999998765
No 26
>PRK13796 GTPase YqeH; Provisional
Probab=90.58 E-value=5.5 Score=36.77 Aligned_cols=144 Identities=19% Similarity=0.170 Sum_probs=91.1
Q ss_pred ccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCC---CCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCC
Q 024292 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNG---ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (269)
Q Consensus 49 s~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~G---in~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~ 125 (269)
..+|-=|.++-.- +.......+.++..++++..-+.- +-.+|..+.-+.- ...+-+.+..
T Consensus 34 ~~~C~RC~~l~hy---~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~--------~~~L~~~~~~------ 96 (365)
T PRK13796 34 EVYCQRCFRLKHY---NEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSW--------IPGLHRFVGN------ 96 (365)
T ss_pred CeEchhhhhhhcc---CcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCch--------hHHHHHHhCC------
Confidence 4567677765442 222122344566666777666554 4457765533321 2233333321
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHH
Q 024292 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (269)
Q Consensus 126 R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l 205 (269)
+.-++|.+|+-..+.....+.+.+.++...+.+|....|++++..-.....+++++.+.++.+.+.+--+|.+|..-..+
T Consensus 97 kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 97 NPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred CCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 36788999986543334456677777777777787656888887665577889999998887788899999999976655
Q ss_pred HHHH
Q 024292 206 RNAY 209 (269)
Q Consensus 206 ~~~~ 209 (269)
-..+
T Consensus 177 iN~L 180 (365)
T PRK13796 177 INRI 180 (365)
T ss_pred HHHH
Confidence 5443
No 27
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=89.86 E-value=2.6 Score=35.30 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=96.5
Q ss_pred HHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH---
Q 024292 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL--- 155 (269)
Q Consensus 79 ~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL--- 155 (269)
++|..-++-|-+.+|- |.|.. .+-+.|++.. ++.. .| -+.+.+.+.+++.+-+
T Consensus 5 ~~I~~~I~pgsrVLDL----GCGdG--------~LL~~L~~~k------~v~g---~G---vEid~~~v~~cv~rGv~Vi 60 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDL----GCGDG--------ELLAYLKDEK------QVDG---YG---VEIDPDNVAACVARGVSVI 60 (193)
T ss_pred HHHHHHcCCCCEEEec----CCCch--------HHHHHHHHhc------CCeE---EE---EecCHHHHHHHHHcCCCEE
Confidence 4566677999999996 44432 2446666532 1110 11 2466777777765444
Q ss_pred --------HHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCC
Q 024292 156 --------FRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (269)
Q Consensus 156 --------~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s 227 (269)
....-+..|.+.+..-- .......+.|+++.+-|+---|++.||.-+..+--+- ..|-.|..-+.+|+
T Consensus 61 q~Dld~gL~~f~d~sFD~VIlsqtL-Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~---~~GrmPvt~~lPy~ 136 (193)
T PF07021_consen 61 QGDLDEGLADFPDQSFDYVILSQTL-QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLL---LRGRMPVTKALPYE 136 (193)
T ss_pred ECCHHHhHhhCCCCCccEEehHhHH-HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHH---hcCCCCCCCCCCCc
Confidence 34444444444443210 0122334457777788887789999998777666543 23446888899999
Q ss_pred ccCCCcch----hhHHHHHHHcCCeEEEcccccCCc
Q 024292 228 LIYRKPEE----NGVKAACDELGITLIAYCPIAQDS 259 (269)
Q Consensus 228 ~~~~~~~~----~~l~~~~~~~gi~via~~pl~~G~ 259 (269)
.++...-. .+..++|++.|+.|.-..++..+.
T Consensus 137 WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 137 WYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred ccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 88865422 268999999999999999888765
No 28
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=89.58 E-value=15 Score=33.05 Aligned_cols=162 Identities=16% Similarity=0.144 Sum_probs=91.8
Q ss_pred ChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 024292 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (269)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~ 149 (269)
...+.++..++++.+.+.|++.|.-. | |+.--...-.+++-. +++.. .-.++.|+|-... +.+
T Consensus 47 ~~ls~eei~~~i~~~~~~gi~~I~~t---G-GEPll~~~l~~li~~-i~~~~---~~~~i~itTNG~l---------l~~ 109 (331)
T PRK00164 47 ELLSLEEIERLVRAFVALGVRKVRLT---G-GEPLLRKDLEDIIAA-LAALP---GIRDLALTTNGYL---------LAR 109 (331)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEE---C-CCCcCccCHHHHHHH-HHhcC---CCceEEEEcCchh---------HHH
Confidence 34567889999999999999887643 3 321000111222322 33321 0146778777411 112
Q ss_pred HHHHHHHHhCCCccceEEeecCCC---------CChHHHHHHHHHHHHcCC----ccEEEecCcCHHHHHHHHHHHHhcC
Q 024292 150 ALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 150 ~l~~sL~~L~~dyiDl~~lH~p~~---------~~~~~~~~~L~~l~~~G~----ir~iGvSn~~~~~l~~~~~~~~~~~ 216 (269)
.-+.|...|++.|- +-+|..++ ...+.++++++.+++.|. |..+-+-..+.+++.++++.++..+
T Consensus 110 -~~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~g 187 (331)
T PRK00164 110 -RAAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRG 187 (331)
T ss_pred -HHHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCC
Confidence 22344555655442 33444432 246889999999999985 2244444667789999999888766
Q ss_pred CCeeEEcccCCccCCCc--------chhhHHHHHHHcCCeEEEc
Q 024292 217 IPLASNQVNYSLIYRKP--------EENGVKAACDELGITLIAY 252 (269)
Q Consensus 217 ~~~~~~Q~~~s~~~~~~--------~~~~l~~~~~~~gi~via~ 252 (269)
+. +.-++|.++.... ...++++..+++|+.+...
T Consensus 188 v~--v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 229 (331)
T PRK00164 188 IQ--LRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQPR 229 (331)
T ss_pred Ce--EEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccccc
Confidence 54 3344455443321 1125788888876654443
No 29
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=87.55 E-value=18 Score=31.45 Aligned_cols=106 Identities=9% Similarity=-0.122 Sum_probs=73.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCC
Q 024292 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~ 217 (269)
...+.+...+-.+-..+-+++|.|-|=.+..+.. .++.+++++.++|.++|.+- +=+|+-++...+++.+.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~------ 143 (248)
T cd04728 71 GCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA------ 143 (248)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc------
Confidence 3567777777777788888999999888887765 45789999999999999765 55777788777777554
Q ss_pred CeeEEcccCCccCCCc--chhhHHHHHHH-cCCeEEEc
Q 024292 218 PLASNQVNYSLIYRKP--EENGVKAACDE-LGITLIAY 252 (269)
Q Consensus 218 ~~~~~Q~~~s~~~~~~--~~~~l~~~~~~-~gi~via~ 252 (269)
.+++++.-=+++..+. ...++++..++ .++.|++-
T Consensus 144 G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 144 GCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 3555544333333221 11235666555 48888874
No 30
>PRK07328 histidinol-phosphatase; Provisional
Probab=87.44 E-value=19 Score=31.52 Aligned_cols=168 Identities=16% Similarity=0.228 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHCCCCeeecccccCCCC------CCCCCchHHHHHHHHhhc---cCCCCCCcEEEEecCCCCCCCCCHHH
Q 024292 76 AAKAAFDTSLDNGITFFDTAEVYGSRA------SFGAINSETLLGRFIKER---KQRDPEVEVTVATKFAALPWRLGRQS 146 (269)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DTA~~Yg~g~------~~~~~~sE~~lG~al~~~---~~~~~R~~v~I~tK~~~~~~~~~~~~ 146 (269)
...+++++|++.|+..+=.+++..... ..+..-+..-+-+.++.. ..+..+=+|++.-=++.. + .
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~-----~-~ 92 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYH-----P-G 92 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccc-----C-C
Confidence 467899999999999886665533200 000000011111222211 111112244444444321 2 2
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCCC--------------ChHH----HHHHHHHHHHcCCccEEEecCc--------
Q 024292 147 VLAALKDSLFRLGLSSVELYQLHWAGIW--------------GNEG----FIDGLGDAVEQGLVKAVGVSNY-------- 200 (269)
Q Consensus 147 i~~~l~~sL~~L~~dyiDl~~lH~p~~~--------------~~~~----~~~~L~~l~~~G~ir~iGvSn~-------- 200 (269)
....+++.|++-..||+ |.-+|+.+.+ +.++ ..+.+.++.+.|.+.-||=-..
T Consensus 93 ~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~ 171 (269)
T PRK07328 93 TEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRP 171 (269)
T ss_pred cHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCC
Confidence 34555666777777877 7888985421 1122 2335777788888877772221
Q ss_pred ---CHHHHHHHHHHHHhcCCCeeEEcccC--CccCCCcchhhHHHHHHHcCCeEEE
Q 024292 201 ---SEKRLRNAYEKLKKRGIPLASNQVNY--SLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 201 ---~~~~l~~~~~~~~~~~~~~~~~Q~~~--s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
-.+.++++++.+.+.++.+.+|-..+ ..-+..+.. .+++.|++.|+.++.
T Consensus 172 ~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~-~il~~~~~~g~~iti 226 (269)
T PRK07328 172 REDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSP-ALLRACRERGIPVVL 226 (269)
T ss_pred chhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCH-HHHHHHHHcCCCEEE
Confidence 12455788888888887777775432 111222222 599999999998653
No 31
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=87.29 E-value=22 Score=32.09 Aligned_cols=153 Identities=12% Similarity=0.049 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 024292 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~s 154 (269)
++..+.+..+.+.|++.|=.-- +.... .+.+ +++++.. +.-++.|=-- ..++.+... .
T Consensus 134 ~~~~~~a~~~~~~Gf~~~KiKv--~~~~d------~~~v-~~vr~~~---~~~~l~vDaN-----~~~~~~~a~-----~ 191 (324)
T TIGR01928 134 EQMLKQIESLKATGYKRIKLKI--TPQIM------HQLV-KLRRLRF---PQIPLVIDAN-----ESYDLQDFP-----R 191 (324)
T ss_pred HHHHHHHHHHHHcCCcEEEEEe--CCchh------HHHH-HHHHHhC---CCCcEEEECC-----CCCCHHHHH-----H
Confidence 5566677778899999884321 11111 2333 3444432 1122332222 234554431 1
Q ss_pred HHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCc
Q 024292 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (269)
Q Consensus 155 L~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~ 233 (269)
+++|. ..++.++..|-+ .+-++.+.+|++.-.+. +.|=|.++...+.++++. ..++++|+..+.+---.
T Consensus 192 ~~~l~--~~~~~~iEeP~~---~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~dvi~~d~~~~GGit 261 (324)
T TIGR01928 192 LKELD--RYQLLYIEEPFK---IDDLSMLDELAKGTITPICLDESITSLDDARNLIEL-----GNVKVINIKPGRLGGLT 261 (324)
T ss_pred HHHHh--hCCCcEEECCCC---hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHc-----CCCCEEEeCcchhcCHH
Confidence 34442 246777776642 34467888888875554 677788888888887654 34788888776544222
Q ss_pred chhhHHHHHHHcCCeEEEcccccCCc
Q 024292 234 EENGVKAACDELGITLIAYCPIAQDS 259 (269)
Q Consensus 234 ~~~~l~~~~~~~gi~via~~pl~~G~ 259 (269)
+-..+.+.|+++|+.++..+.+..|+
T Consensus 262 ~~~~~~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 262 EVQKAIETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred HHHHHHHHHHHcCCeEEEcceEcccH
Confidence 22258999999999999877666665
No 32
>PRK06740 histidinol-phosphatase; Validated
Probab=87.02 E-value=11 Score=34.20 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=65.3
Q ss_pred HHHHHHHHHhCCCccceEEeecCCCC--C----------------hHHHHHHHHHHHHcCCccEEEec------CcC---
Q 024292 149 AALKDSLFRLGLSSVELYQLHWAGIW--G----------------NEGFIDGLGDAVEQGLVKAVGVS------NYS--- 201 (269)
Q Consensus 149 ~~l~~sL~~L~~dyiDl~~lH~p~~~--~----------------~~~~~~~L~~l~~~G~ir~iGvS------n~~--- 201 (269)
..+++.|.....||+ +.-+|+.+.+ . .....+.+.++.+.|++.-||=- ++.
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 455566667778887 7888975421 0 12356778888899988877721 121
Q ss_pred ---HHHHHHHHHHHHhcCCCeeEEcc-cC--CccCCCcchhhHHHHHHHcCCeEEE
Q 024292 202 ---EKRLRNAYEKLKKRGIPLASNQV-NY--SLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 202 ---~~~l~~~~~~~~~~~~~~~~~Q~-~~--s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
.+.++++++.+.+.++.+.+|-. .+ ..-+.-+.. .+++.|++.|+.|+.
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~-~il~~~~e~Gv~~tl 289 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSP-LFLQVLAKHEVPITL 289 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCH-HHHHHHHHCCCeEEE
Confidence 24778888888888888888864 22 111122222 499999999998754
No 33
>PRK05588 histidinol-phosphatase; Provisional
Probab=86.66 E-value=20 Score=31.02 Aligned_cols=168 Identities=10% Similarity=0.113 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCC---chHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024292 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAI---NSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~---~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l 151 (269)
....+.+++|++.|+..+ .+++......+... .-+..+ +.++... ..+|++.--++ ..++ ....+
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~----~~~I~~GiE~~-----~~~~-~~~~~ 83 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYR----NNKLLLGIELG-----MEKD-LIEEN 83 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHh----cCCcceEEEec-----ccCC-CHHHH
Confidence 456789999999999998 77764221100000 012222 2222222 13454444442 2222 34566
Q ss_pred HHHHHHhCCCccceEEeecCCCC-----------ChH----HHHHHHHHHHH-cCCccEEE---ec----C---------
Q 024292 152 KDSLFRLGLSSVELYQLHWAGIW-----------GNE----GFIDGLGDAVE-QGLVKAVG---VS----N--------- 199 (269)
Q Consensus 152 ~~sL~~L~~dyiDl~~lH~p~~~-----------~~~----~~~~~L~~l~~-~G~ir~iG---vS----n--------- 199 (269)
++.|++...||+ +.-+|+.+.+ +.+ ..++.+.++.+ .+++.-|| +- .
T Consensus 84 ~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~ 162 (255)
T PRK05588 84 KELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYD 162 (255)
T ss_pred HHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCccccccccHH
Confidence 778888888887 7888985321 222 34466777776 46555444 11 0
Q ss_pred cCHHHHHHHHHHHHhcCCCeeEEcccCCc-cCCCcchhhHHHHHHHcCCeEEEccccc
Q 024292 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSL-IYRKPEENGVKAACDELGITLIAYCPIA 256 (269)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~-~~~~~~~~~l~~~~~~~gi~via~~pl~ 256 (269)
.-...++++++.+.+.++.+.+|-..+.. ....+ ...+++.|++.|+.+++.++=+
T Consensus 163 ~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~-~~~~l~~~~~~g~~~i~lgSDA 219 (255)
T PRK05588 163 EFKEIIDEILKVLIEKEKVLEINTRRLDDKRSVEN-LVKIYKRFYELGGKYITLGSDA 219 (255)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCC-HHHHHHHHHHcCCcEEEEECCC
Confidence 11356788888888888878877533321 11111 1248999999999866555443
No 34
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=86.28 E-value=24 Score=32.21 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCC---CCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024292 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASF---GAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~---~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l 151 (269)
++..+.+..+.+.|++.|=.--....+..+ ++..-.+.+ +++++.- -+++-|..=.. ..++.+...
T Consensus 125 ~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i-~avr~~~----g~~~~l~vDaN---~~~~~~~A~--- 193 (352)
T cd03325 125 SDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERV-AALREAV----GPDIDIGVDFH---GRVSKPMAK--- 193 (352)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHH-HHHHHhh----CCCCEEEEECC---CCCCHHHHH---
Confidence 455666677789999988653221110000 000002233 3444422 13444433321 234444322
Q ss_pred HHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccC
Q 024292 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (269)
Q Consensus 152 ~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~ 230 (269)
+.++.|. -.++.++..|-+ .+-++.+.+|+++.-+. +.|=|.++++.+..+++. --++++|+....+-
T Consensus 194 -~~~~~l~--~~~i~~iEeP~~---~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~v~~d~~~~G 262 (352)
T cd03325 194 -DLAKELE--PYRLLFIEEPVL---PENVEALAEIAARTTIPIATGERLFSRWDFKELLED-----GAVDIIQPDISHAG 262 (352)
T ss_pred -HHHHhcc--ccCCcEEECCCC---ccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHh-----CCCCEEecCccccC
Confidence 2333442 346667776643 23478888888876555 666677788888887653 24788888866543
Q ss_pred CCcchhhHHHHHHHcCCeEEEcc
Q 024292 231 RKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~via~~ 253 (269)
--.+...+.++|+++||.++.++
T Consensus 263 Git~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 263 GITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHHHHHcCCcEeccC
Confidence 22222259999999999999776
No 35
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=86.17 E-value=26 Score=31.72 Aligned_cols=139 Identities=15% Similarity=0.154 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 024292 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~ 150 (269)
..+.++...+++.+.+.|+..|.-. | |+.--...-++++.. +++.+. ..++.|+|-... +. .
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~t---G-GEPllr~dl~~li~~-i~~~~~---l~~i~itTNG~l---------l~-~ 105 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLT---G-GEPLVRRGCDQLVAR-LGKLPG---LEELSLTTNGSR---------LA-R 105 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE---C-cCCCccccHHHHHHH-HHhCCC---CceEEEEeChhH---------HH-H
Confidence 4567889999999999999887543 3 321000011233322 233220 125667776411 22 2
Q ss_pred HHHHHHHhCCCccceEEeecCCC---------CChHHHHHHHHHHHHcCC--c--cEEEecCcCHHHHHHHHHHHHhcCC
Q 024292 151 LKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL--V--KAVGVSNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 151 l~~sL~~L~~dyiDl~~lH~p~~---------~~~~~~~~~L~~l~~~G~--i--r~iGvSn~~~~~l~~~~~~~~~~~~ 217 (269)
.-+.|+..|+++|- +-++..++ -..+.+++.++.+++.|. | ..+-+...+.+++.++++.+...++
T Consensus 106 ~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi 184 (329)
T PRK13361 106 FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGL 184 (329)
T ss_pred HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCC
Confidence 34456667777665 34555433 125789999999999985 2 3344455788999999999988776
Q ss_pred CeeEEcccCCccC
Q 024292 218 PLASNQVNYSLIY 230 (269)
Q Consensus 218 ~~~~~Q~~~s~~~ 230 (269)
.+.+ ++|-|+.
T Consensus 185 ~~~~--ie~mP~g 195 (329)
T PRK13361 185 DIAF--IEEMPLG 195 (329)
T ss_pred eEEE--EecccCC
Confidence 4433 4444443
No 36
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=84.44 E-value=30 Score=31.41 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCC-CCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRAS-FGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~-~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~ 152 (269)
.++..+.++.+++.|++.|=.--..+.... .+.....+.+ +++++.- -+++-|.-=.. ..++++...+
T Consensus 121 ~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~----g~~~~l~vDan---~~~~~~~A~~--- 189 (341)
T cd03327 121 LDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAV----GYDVDLMLDCY---MSWNLNYAIK--- 189 (341)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHh----CCCCcEEEECC---CCCCHHHHHH---
Confidence 355666777888999998854311111000 0000112333 2333321 12333332221 2345554333
Q ss_pred HHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCC
Q 024292 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (269)
Q Consensus 153 ~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~ 231 (269)
.+++|. ..|+.++..|-+ .+-++.+.+|++.-.|. +.|=|.++...+.++++. ..++++|+..+..--
T Consensus 190 -~~~~l~--~~~~~~iEeP~~---~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~-----~a~d~i~~d~~~~GG 258 (341)
T cd03327 190 -MARALE--KYELRWIEEPLI---PDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEG-----RAVDILQPDVNWVGG 258 (341)
T ss_pred -HHHHhh--hcCCccccCCCC---ccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHc-----CCCCEEecCccccCC
Confidence 233332 246667776643 33467788888876666 666677788888888664 247888888765442
Q ss_pred CcchhhHHHHHHHcCCeEEEcc
Q 024292 232 KPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 232 ~~~~~~l~~~~~~~gi~via~~ 253 (269)
-.+-..+.++|+++|+.++.++
T Consensus 259 it~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 259 ITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHHHcCCeecccc
Confidence 2222359999999999988774
No 37
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=84.21 E-value=16 Score=31.71 Aligned_cols=133 Identities=17% Similarity=0.103 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCC----------------CCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecC
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGS----------------RASFGAINSETLLGRFIKERKQRDPEVEVTVATKF 135 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~----------------g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~ 135 (269)
.+.++..++.+.+-+.||.||=|...... ++. ..-.+| +.+.+. ...++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl----~n~~lL-~~~A~t-----gkPvIlSTG~ 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDL----TNLPLL-EYIAKT-----GKPVILSTGM 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGT----T-HHHH-HHHHTT------S-EEEE-TT
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccc----cCHHHH-HHHHHh-----CCcEEEECCC
Confidence 35688999999999999999977543211 000 001222 222222 3567787765
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC--h-HHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHH
Q 024292 136 AALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--N-EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL 212 (269)
Q Consensus 136 ~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~--~-~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~ 212 (269)
.+.+.|.++++...++- .-|+.++|+...+| + +--+..+..|++.=- --||+|.|+.....-++.++
T Consensus 123 ------stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~~~~~Ava 192 (241)
T PF03102_consen 123 ------STLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIEAPIAAVA 192 (241)
T ss_dssp --------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSSHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCcHHHHHHHH
Confidence 35666777776553333 35999999987654 2 334666666665422 66899999775544444443
Q ss_pred HhcCCCeeEEcccCCc
Q 024292 213 KKRGIPLASNQVNYSL 228 (269)
Q Consensus 213 ~~~~~~~~~~Q~~~s~ 228 (269)
.| -.++.=+|.+
T Consensus 193 --lG--A~vIEKHfTl 204 (241)
T PF03102_consen 193 --LG--ARVIEKHFTL 204 (241)
T ss_dssp --TT---SEEEEEB-S
T ss_pred --cC--CeEEEEEEEC
Confidence 22 3445445543
No 38
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.07 E-value=2.9 Score=37.88 Aligned_cols=150 Identities=17% Similarity=0.133 Sum_probs=87.7
Q ss_pred cceeeEeCCCCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCC--eeecccccCCCCCCCCCchHHH
Q 024292 35 AEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAEVYGSRASFGAINSETL 112 (269)
Q Consensus 35 ~m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin--~~DTA~~Yg~g~~~~~~~sE~~ 112 (269)
+|.+..++ .|..|-.+|+|. +|.. .++.|-..|.+ .||+. ++-
T Consensus 173 pLk~~g~~-pG~~vgI~GlGG--LGh~------------------aVq~AKAMG~rV~vis~~--------------~~k 217 (360)
T KOG0023|consen 173 PLKRSGLG-PGKWVGIVGLGG--LGHM------------------AVQYAKAMGMRVTVISTS--------------SKK 217 (360)
T ss_pred hhHHcCCC-CCcEEEEecCcc--cchH------------------HHHHHHHhCcEEEEEeCC--------------chh
Confidence 67888888 488888888887 5543 35666666766 66764 222
Q ss_pred HHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCc
Q 024292 113 LGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV 192 (269)
Q Consensus 113 lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~i 192 (269)
--++++..+. |.++++||- ++ +.+++..++. .+.|.+--+ ....+-..++-++..|++
T Consensus 218 keea~~~LGA----d~fv~~~~d--------~d-~~~~~~~~~d-g~~~~v~~~--------a~~~~~~~~~~lk~~Gt~ 275 (360)
T KOG0023|consen 218 KEEAIKSLGA----DVFVDSTED--------PD-IMKAIMKTTD-GGIDTVSNL--------AEHALEPLLGLLKVNGTL 275 (360)
T ss_pred HHHHHHhcCc----ceeEEecCC--------HH-HHHHHHHhhc-Ccceeeeec--------cccchHHHHHHhhcCCEE
Confidence 2356677762 455555543 33 3333333332 222222222 222344567778999999
Q ss_pred cEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeE
Q 024292 193 KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITL 249 (269)
Q Consensus 193 r~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~v 249 (269)
-.+|+-+. +..+..+- .-+-...+-.|.+-...+.++++++|.+++|..
T Consensus 276 V~vg~p~~-~~~~~~~~-------lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 276 VLVGLPEK-PLKLDTFP-------LILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred EEEeCcCC-cccccchh-------hhcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 99999775 22222211 113344556666666666678899998887653
No 39
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=83.54 E-value=27 Score=29.73 Aligned_cols=128 Identities=13% Similarity=0.111 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l 151 (269)
.+.++..++++...++||..|+.....-... ..+.+-+..+... . ..+.+.+ ....+.++..+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~------~~~~v~~~~~~~~----~--~~~~~~~-----~~~~~~i~~~~ 73 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASED------DFEQVRRLREALP----N--ARLQALC-----RANEEDIERAV 73 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHH------HHHHHHHHHHHHH----S--SEEEEEE-----ESCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHH------HHHHhhhhhhhhc----c--cccceee-----eehHHHHHHHH
Confidence 4458888899998999999999982222211 1444555554443 1 2233332 24456666666
Q ss_pred HHHHHHhCCCccceEEeecCCC------CC----hHHHHHHHHHHHHcCCccEEEec---CcCHHHHHHHHHHHHhcCC
Q 024292 152 KDSLFRLGLSSVELYQLHWAGI------WG----NEGFIDGLGDAVEQGLVKAVGVS---NYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 152 ~~sL~~L~~dyiDl~~lH~p~~------~~----~~~~~~~L~~l~~~G~ir~iGvS---n~~~~~l~~~~~~~~~~~~ 217 (269)
+. +...|.|.+.++.-=++-. .+ .+.+.+.++..++.|....+++- .++++.+.++.+.+...+.
T Consensus 74 ~~-~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~ 151 (237)
T PF00682_consen 74 EA-AKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGA 151 (237)
T ss_dssp HH-HHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-
T ss_pred Hh-hHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCC
Confidence 53 3567877777654322100 11 34555666677788887788863 4577777777777665553
No 40
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=82.97 E-value=17 Score=33.70 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=64.1
Q ss_pred EEeecCCC------------CChHHHHHHHHHHHHcCCccEEEec-------CcCHHHHHHHHHHHHhcC----CCeeEE
Q 024292 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGLVKAVGVS-------NYSEKRLRNAYEKLKKRG----IPLASN 222 (269)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~~L~~l~~~G~ir~iGvS-------n~~~~~l~~~~~~~~~~~----~~~~~~ 222 (269)
+-||.|+. ++.+++++++.+..+.-. |.|-+- |.++++.+++.++++... .+..++
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 67898875 567899999998865432 233322 778899999988875321 167999
Q ss_pred cccCCccCCCcc----h---hhHHHHHHHcCCeEEEcccccC
Q 024292 223 QVNYSLIYRKPE----E---NGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 223 Q~~~s~~~~~~~----~---~~l~~~~~~~gi~via~~pl~~ 257 (269)
-++||+...... . ....+..+++||.+......+.
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 999999754221 1 1467778889999999987754
No 41
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=82.88 E-value=7.1 Score=33.73 Aligned_cols=106 Identities=19% Similarity=0.109 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-ChHHHHHHHHHHHHcC-CccEEEecCcCHHHHHHHHHHHHhcCCC
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-GNEGFIDGLGDAVEQG-LVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~-~~~~~~~~L~~l~~~G-~ir~iGvSn~~~~~l~~~~~~~~~~~~~ 218 (269)
.++.+...+-++ .|..+|+++|++-..-.+... ..++.++.++++.+.+ .++...++.-..+.++.+.+ .+
T Consensus 15 ~~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~----~g-- 87 (265)
T cd03174 15 TFSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALE----AG-- 87 (265)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHh----CC--
Confidence 455665555444 577889999888776544221 1356788888888888 57766777655555555533 33
Q ss_pred eeEEcccCCccC--------CCcch-----hhHHHHHHHcCCeEEEcc
Q 024292 219 LASNQVNYSLIY--------RKPEE-----NGVKAACDELGITLIAYC 253 (269)
Q Consensus 219 ~~~~Q~~~s~~~--------~~~~~-----~~l~~~~~~~gi~via~~ 253 (269)
++.+++.+..-+ +..+. ...+++++++|+.+...-
T Consensus 88 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 88 VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 444444443331 11111 147778888888776655
No 42
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=82.76 E-value=9 Score=32.06 Aligned_cols=149 Identities=13% Similarity=-0.004 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l 151 (269)
.|++++.+.++.+++.|++..|.- +.++-.+++..+....++++++.-= .+..+.+++.+
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~i~--------------~~~l~p~m~~iG~~w~~gei~va~~------~~a~~~~~~~l 68 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIELI--------------EKGLMAGMGVVGKLFEDGELFLPHV------MMSADAMLAGI 68 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHHHH--------------HHHHHHHHHHHHHHHcCCCccHHHH------HHHHHHHHHHH
Confidence 356899999999999999877654 4455555554432111234433111 11233344444
Q ss_pred HHHHHHhCCC----ccceEEeecC-CCCChHHHHHHHHHHHHcCC-ccEEEecCcCHHHHHHHHHHHHhcCCCeeEEccc
Q 024292 152 KDSLFRLGLS----SVELYQLHWA-GIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (269)
Q Consensus 152 ~~sL~~L~~d----yiDl~~lH~p-~~~~~~~~~~~L~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~ 225 (269)
+.....+..+ .---+++-.+ +....-+..-.-.-|+..|. |.++|. +-+++.+.+.++. ..|+++.+.
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~-----~~pd~v~lS 142 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKK-----EKPLMLTGS 142 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHH-----cCCCEEEEc
Confidence 4433434311 0011222221 11111222222333455664 667775 3355555555443 356666666
Q ss_pred CCccCCCcchhhHHHHHHHcC
Q 024292 226 YSLIYRKPEENGVKAACDELG 246 (269)
Q Consensus 226 ~s~~~~~~~~~~l~~~~~~~g 246 (269)
+++......-.++++.+++.+
T Consensus 143 ~~~~~~~~~~~~~i~~l~~~~ 163 (197)
T TIGR02370 143 ALMTTTMYGQKDINDKLKEEG 163 (197)
T ss_pred cccccCHHHHHHHHHHHHHcC
Confidence 655444333335777777774
No 43
>PRK00208 thiG thiazole synthase; Reviewed
Probab=82.09 E-value=34 Score=29.87 Aligned_cols=106 Identities=10% Similarity=-0.117 Sum_probs=72.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCC
Q 024292 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~ 217 (269)
...+.+...+-.+-..+-++++.|-|=.+..+.. .++.+++++.++|.++|.+- +=+|+-++...+++.+.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~------ 143 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA------ 143 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc------
Confidence 3567777777777788888999998888877654 45789999999999999765 55777788777777554
Q ss_pred CeeEEcccCCccCCCc--chhhHHHHHHH-cCCeEEEc
Q 024292 218 PLASNQVNYSLIYRKP--EENGVKAACDE-LGITLIAY 252 (269)
Q Consensus 218 ~~~~~Q~~~s~~~~~~--~~~~l~~~~~~-~gi~via~ 252 (269)
.+++++.-=+++.... ...++++..++ .++.|++-
T Consensus 144 G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 144 GCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 3555544223333221 01235666666 48888874
No 44
>PLN02681 proline dehydrogenase
Probab=82.05 E-value=48 Score=31.64 Aligned_cols=170 Identities=13% Similarity=0.104 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHCCCC-eeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 024292 76 AAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (269)
Q Consensus 76 ~~~~~l~~A~~~Gin-~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~s 154 (269)
...+++++|.+.|++ +||.=..|=+..- ..+.-+..++......+.-|+++--.- -.-+++.+...++.+
T Consensus 221 rl~~i~~~A~~~gv~l~IDAE~s~~q~ai------d~l~~~l~~~yN~~~~~~~V~~T~QaY---Lk~t~~~l~~~l~~a 291 (455)
T PLN02681 221 RLQKLCERAAQLGVPLLIDAEYTSLQPAI------DYITYDLAREFNKGKDRPIVYGTYQAY---LKDARERLRLDLERS 291 (455)
T ss_pred HHHHHHHHHHHCCCEEEEeCCcccchhHH------HHHHHHHHHHhccccCCCcEEEEEeCc---cccCHHHHHHHHHHH
Confidence 466788999999999 6776544433221 344444444443100023455555542 134566677777665
Q ss_pred HHH---hCC-----CccceE-----EeecCCC-CC-----hHHHHHHHHHHHH---cCCccEEEecCcCHHHHHHHHHHH
Q 024292 155 LFR---LGL-----SSVELY-----QLHWAGI-WG-----NEGFIDGLGDAVE---QGLVKAVGVSNYSEKRLRNAYEKL 212 (269)
Q Consensus 155 L~~---L~~-----dyiDl~-----~lH~p~~-~~-----~~~~~~~L~~l~~---~G~ir~iGvSn~~~~~l~~~~~~~ 212 (269)
.+. +|+ -|+|-= ...||++ ++ .....+.++.+.+ .+. -++.|.+|+.+.+..+.+.+
T Consensus 292 ~~~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~-~~~~vATHN~~Si~~a~~~~ 370 (455)
T PLN02681 292 EREGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGD-GEVMLATHNVESGELAAAKM 370 (455)
T ss_pred HhcCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCC-eeeEEecCCHHHHHHHHHHH
Confidence 443 121 233321 1223333 11 1222333444443 344 48899999999999999988
Q ss_pred HhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccC
Q 024292 213 KKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 213 ~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~ 257 (269)
.+.++++.-.+++|-.+.--.+ .+-....+.|..|.-|-|++.
T Consensus 371 ~~~gi~~~~~~veF~qL~GM~d--~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 371 NELGLHKGDPRVQFAQLLGMSD--NLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred HHcCCCCCCCCEEEeccCCCCH--HHHHHHHhcCCCEEEEeeccC
Confidence 8877754422333333332222 366666778988988888875
No 45
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=81.54 E-value=43 Score=30.71 Aligned_cols=146 Identities=11% Similarity=0.002 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 024292 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~s 154 (269)
++..+.+..+++.|++.|=.-- - |. + +++++.- -+++.|..-.. ..++.+...+ .
T Consensus 128 ~~~~~~a~~~~~~Gf~~~KiKv---~---------~~-v-~avre~~----G~~~~l~vDaN---~~w~~~~A~~----~ 182 (361)
T cd03322 128 PELLEAVERHLAQGYRAIRVQL---P---------KL-F-EAVREKF----GFEFHLLHDVH---HRLTPNQAAR----F 182 (361)
T ss_pred HHHHHHHHHHHHcCCCeEeeCH---H---------HH-H-HHHHhcc----CCCceEEEECC---CCCCHHHHHH----H
Confidence 5566667777889998874310 0 22 2 3334322 13444443331 2355554332 2
Q ss_pred HHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCc
Q 024292 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (269)
Q Consensus 155 L~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~ 233 (269)
++.|. -+++.++..|-+ .+-++.+.+|++...+. ..|=|-+++..+..+++. ..++++|+....+.--.
T Consensus 183 ~~~l~--~~~l~~iEeP~~---~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~-----~a~di~~~d~~~~GGit 252 (361)
T cd03322 183 GKDVE--PYRLFWMEDPTP---AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQE-----RLIDYIRTTVSHAGGIT 252 (361)
T ss_pred HHHhh--hcCCCEEECCCC---cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHh-----CCCCEEecCccccCCHH
Confidence 23332 347778887743 23478888888887665 777777888888888664 34788888876544222
Q ss_pred chhhHHHHHHHcCCeEEEcccc
Q 024292 234 EENGVKAACDELGITLIAYCPI 255 (269)
Q Consensus 234 ~~~~l~~~~~~~gi~via~~pl 255 (269)
+-..+.+.|+++|+.++.++..
T Consensus 253 ~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 253 PARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHHHHHHHHHcCCeeeccCCC
Confidence 2235999999999999987544
No 46
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=81.46 E-value=30 Score=31.73 Aligned_cols=82 Identities=15% Similarity=0.089 Sum_probs=56.0
Q ss_pred CChHHHHHHHHHHHHc-CC---ccEEEe--cCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCc-----ch--hhHHH
Q 024292 174 WGNEGFIDGLGDAVEQ-GL---VKAVGV--SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP-----EE--NGVKA 240 (269)
Q Consensus 174 ~~~~~~~~~L~~l~~~-G~---ir~iGv--Sn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~-----~~--~~l~~ 240 (269)
++.+++++++.++.+. |+ +-++=+ -|.++++++++.+.++ +.++.++-++||+..... ++ ..+.+
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~--~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~ 300 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLK--GKYAVMNLIPYNSVDGDAYRRPSGERIVAMAR 300 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHh--ccccccceecCCccCCCCccCCCHHHHHHHHH
Confidence 5788888988887654 32 122212 2778999999988764 346788888998855322 11 14667
Q ss_pred HHHHcCCeEEEcccccC
Q 024292 241 ACDELGITLIAYCPIAQ 257 (269)
Q Consensus 241 ~~~~~gi~via~~pl~~ 257 (269)
..+++||.+......+.
T Consensus 301 ~L~~~gi~~tiR~~~G~ 317 (344)
T PRK14464 301 YLHRRGVLTKVRNSAGQ 317 (344)
T ss_pred HHHHCCceEEEECCCCC
Confidence 77889999999887754
No 47
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=81.26 E-value=44 Score=30.60 Aligned_cols=157 Identities=13% Similarity=0.060 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHCC-CCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024292 75 KAAKAAFDTSLDNG-ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 75 ~~~~~~l~~A~~~G-in~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~ 153 (269)
++..+.+..+++.| ++.|=.-- |...- ..-.+.+ +++++.- -+++-|.-=.. ..++.+...+-+ +
T Consensus 144 ~~~~~~~~~~~~~G~f~~~KiKv--g~~~~---~~d~~~v-~avr~~~----g~~~~l~iDaN---~~~~~~~A~~~~-~ 209 (365)
T cd03318 144 ERDIAEAEEMLEAGRHRRFKLKM--GARPP---ADDLAHV-EAIAKAL----GDRASVRVDVN---QAWDESTAIRAL-P 209 (365)
T ss_pred HHHHHHHHHHHhCCCceEEEEEe--CCCCh---HHHHHHH-HHHHHHc----CCCcEEEEECC---CCCCHHHHHHHH-H
Confidence 33445556677888 88875431 21000 0002333 3343332 13443433321 234554333222 2
Q ss_pred HHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCC
Q 024292 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~ 232 (269)
.|+. .++.++..|-+ .+-++.+.+|+++..+. ++|=|-++...+.++++. ..++++|+.....---
T Consensus 210 ~l~~-----~~~~~iEeP~~---~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~-----~~~d~~~~d~~~~GGi 276 (365)
T cd03318 210 RLEA-----AGVELIEQPVP---RENLDGLARLRSRNRVPIMADESVSGPADAFELARR-----GAADVFSLKIAKSGGL 276 (365)
T ss_pred HHHh-----cCcceeeCCCC---cccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHh-----CCCCeEEEeecccCCH
Confidence 3333 35566666632 23467888888876655 666777788888888764 2467787776554322
Q ss_pred cchhhHHHHHHHcCCeEEEcccccCC
Q 024292 233 PEENGVKAACDELGITLIAYCPIAQD 258 (269)
Q Consensus 233 ~~~~~l~~~~~~~gi~via~~pl~~G 258 (269)
.+-..+..+|+++|+.++..+....+
T Consensus 277 t~~~~~~~~a~~~gi~~~~~~~~~s~ 302 (365)
T cd03318 277 RRAQKVAAIAEAAGIALYGGTMLESS 302 (365)
T ss_pred HHHHHHHHHHHHcCCceeecCcchhH
Confidence 22225899999999999875444333
No 48
>PRK07329 hypothetical protein; Provisional
Probab=81.03 E-value=27 Score=30.18 Aligned_cols=106 Identities=13% Similarity=0.144 Sum_probs=64.6
Q ss_pred HHHHHHHHHhCCCccceEEeecCCC----------CChHH----HHHHHHHHHHcC-CccEEE---e-------cCcC--
Q 024292 149 AALKDSLFRLGLSSVELYQLHWAGI----------WGNEG----FIDGLGDAVEQG-LVKAVG---V-------SNYS-- 201 (269)
Q Consensus 149 ~~l~~sL~~L~~dyiDl~~lH~p~~----------~~~~~----~~~~L~~l~~~G-~ir~iG---v-------Sn~~-- 201 (269)
..+++.|.+...||| +.-+|+.+. .+.++ ..+.+.++.+.+ .+.-+| + ...+
T Consensus 83 ~~~~~~l~~~~~Dyv-IgSvH~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~ 161 (246)
T PRK07329 83 DDILDFLANKDFDLK-LLSVHHNGVYDYLDDEVADMDKKELLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELK 161 (246)
T ss_pred HHHHHHhccCCCCeE-EEEEEEcCCCCCccHHHhcCCHHHHHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcChH
Confidence 455666667778888 888898532 12233 347778877776 655555 1 1111
Q ss_pred --HHHHHHHHHHHHhcCCCeeEEcccCC-ccCCCcchhhHHHHHHHcCCeEEEccccc
Q 024292 202 --EKRLRNAYEKLKKRGIPLASNQVNYS-LIYRKPEENGVKAACDELGITLIAYCPIA 256 (269)
Q Consensus 202 --~~~l~~~~~~~~~~~~~~~~~Q~~~s-~~~~~~~~~~l~~~~~~~gi~via~~pl~ 256 (269)
.+.++++++.+.+.+..+.+|-..+. ....... ..+++.|++.|+..++.+.=+
T Consensus 162 ~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~-~~~l~~~~~~g~~~i~~gSDA 218 (246)
T PRK07329 162 AFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLY-RYAIELYKQLGGKLFSIGSDA 218 (246)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcch-HHHHHHHHHcCCeEEEecCCC
Confidence 34567777888888887888765442 1111111 248999999998755554433
No 49
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=80.92 E-value=44 Score=31.19 Aligned_cols=154 Identities=10% Similarity=-0.011 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHH-CCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024292 74 MKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 74 ~~~~~~~l~~A~~-~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~ 152 (269)
.++..+.++.+++ .|++.|=.-. |.... ..-.+.+ +++++.. .++.|..-.. ..++++...+.
T Consensus 169 ~e~~~~~a~~~~~~~Gf~~~KiKv--G~~~~---~~di~~v-~avRea~-----~~~~l~vDaN---~~w~~~~A~~~-- 232 (395)
T cd03323 169 PEGVVRLARAAIDRYGFKSFKLKG--GVLPG---EEEIEAV-KALAEAF-----PGARLRLDPN---GAWSLETAIRL-- 232 (395)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEec--CCCCH---HHHHHHH-HHHHHhC-----CCCcEEEeCC---CCcCHHHHHHH--
Confidence 3555556666665 6999885432 21110 0001222 3333321 1233333331 23555543333
Q ss_pred HHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCC
Q 024292 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (269)
Q Consensus 153 ~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~ 231 (269)
+++|. - |+.++..|-+ -++.|.+|++...+. +.|-|.++.+.+.++++. .-++++|......--
T Consensus 233 --~~~l~--~-~l~~iEeP~~-----d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~-----~avdil~~d~~~~GG 297 (395)
T cd03323 233 --AKELE--G-VLAYLEDPCG-----GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQL-----NAVDIPLADHHFWGG 297 (395)
T ss_pred --HHhcC--c-CCCEEECCCC-----CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHc-----CCCcEEeeccccccC
Confidence 34453 3 7778887743 478888888887665 666667777777777653 247888888765442
Q ss_pred CcchhhHHHHHHHcCCeEEEcccccCC
Q 024292 232 KPEENGVKAACDELGITLIAYCPIAQD 258 (269)
Q Consensus 232 ~~~~~~l~~~~~~~gi~via~~pl~~G 258 (269)
-.+-..+.+.|+++||.++.++....|
T Consensus 298 it~~~kia~~A~~~gi~~~~h~~~e~~ 324 (395)
T cd03323 298 MRGSVRVAQVCETWGLGWGMHSNNHLG 324 (395)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCcccH
Confidence 222235999999999999998765333
No 50
>PRK14017 galactonate dehydratase; Provisional
Probab=80.48 E-value=40 Score=31.13 Aligned_cols=159 Identities=14% Similarity=0.088 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCC--CC-CCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGSR--AS-FGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g--~~-~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~ 150 (269)
.++..+.+..+++.|++.|=.--.-..+ .+ .++..-.+.+ +++++.- -+++-|.-=.. ..++.+...
T Consensus 125 ~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i-~avr~~~----g~~~~l~vDaN---~~w~~~~A~-- 194 (382)
T PRK14017 125 PADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARV-AAVREAV----GPEIGIGVDFH---GRVHKPMAK-- 194 (382)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHH-HHHHHHh----CCCCeEEEECC---CCCCHHHHH--
Confidence 3556677788889999988653100000 00 0000002223 2333321 03444433331 234554322
Q ss_pred HHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCcc
Q 024292 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (269)
Q Consensus 151 l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~ 229 (269)
+.++.|. -+++.++..|-+ .+-++.+.+|.+...+. ..|=|.++...+..+++. --++++|+..+.+
T Consensus 195 --~~~~~l~--~~~~~~iEeP~~---~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~-----~a~d~v~~d~~~~ 262 (382)
T PRK14017 195 --VLAKELE--PYRPMFIEEPVL---PENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEA-----GGVDIIQPDLSHA 262 (382)
T ss_pred --HHHHhhc--ccCCCeEECCCC---cCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHc-----CCCCeEecCcccc
Confidence 2333442 346667776642 22357788888887665 666777888888888664 2478888887655
Q ss_pred CCCcchhhHHHHHHHcCCeEEEccc
Q 024292 230 YRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 230 ~~~~~~~~l~~~~~~~gi~via~~p 254 (269)
---.+-..+.++|+++||.++.++.
T Consensus 263 GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 263 GGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred CCHHHHHHHHHHHHHcCCeEeecCC
Confidence 3212222599999999999998865
No 51
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=79.47 E-value=34 Score=31.26 Aligned_cols=152 Identities=13% Similarity=0.033 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 024292 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~s 154 (269)
++..+.+..+++.|++.|=.--....... ..+.+ +++++.. -+++.|..-.. ..++.+...+-++ .
T Consensus 143 ~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~-----d~~~v-~air~~~----g~~~~l~vDaN---~~~~~~~A~~~~~-~ 208 (355)
T cd03321 143 KLATERAVTAAEEGFHAVKTKIGYPTADE-----DLAVV-RSIRQAV----GDGVGLMVDYN---QSLTVPEAIERGQ-A 208 (355)
T ss_pred HHHHHHHHHHHHhhhHHHhhhcCCCChHh-----HHHHH-HHHHHhh----CCCCEEEEeCC---CCcCHHHHHHHHH-H
Confidence 45555666677888876643211111000 12333 3444432 13555544432 3455554333333 2
Q ss_pred HHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCc-cEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCc
Q 024292 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (269)
Q Consensus 155 L~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~i-r~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~ 233 (269)
|+. .++.++..|-. .+-++.+.+|++.--| -+.|=+.+++..+.++++. -.++++|+..+.+---.
T Consensus 209 l~~-----~~i~~iEeP~~---~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~-----~~~d~i~~~~~~~GGit 275 (355)
T cd03321 209 LDQ-----EGLTWIEEPTL---QHDYEGHARIASALRTPVQMGENWLGPEEMFKALSA-----GACDLVMPDLMKIGGVT 275 (355)
T ss_pred HHc-----CCCCEEECCCC---CcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHh-----CCCCeEecCHhhhCCHH
Confidence 233 35666666643 2346777777776433 2566667788888888664 24788888776654222
Q ss_pred chhhHHHHHHHcCCeEEEcc
Q 024292 234 EENGVKAACDELGITLIAYC 253 (269)
Q Consensus 234 ~~~~l~~~~~~~gi~via~~ 253 (269)
+-..+.++|+.+|+.++.+.
T Consensus 276 ~~~~ia~~A~~~gi~~~~h~ 295 (355)
T cd03321 276 GWLRASALAEQAGIPMSSHL 295 (355)
T ss_pred HHHHHHHHHHHcCCeecccc
Confidence 22358999999999987654
No 52
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=78.82 E-value=47 Score=31.24 Aligned_cols=151 Identities=11% Similarity=0.070 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 024292 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~s 154 (269)
++..+..+.+++.|++.|=.-- |... ....+.+ +++++.- -+++.|.-=.. ..++++...+.+
T Consensus 198 ~~~~~~a~~~~~~Gf~~~KiKv--g~~~----~~d~~~v-~avRe~v----G~~~~L~vDaN---~~w~~~~A~~~~--- 260 (415)
T cd03324 198 EKLRRLCKEALAQGFTHFKLKV--GADL----EDDIRRC-RLAREVI----GPDNKLMIDAN---QRWDVPEAIEWV--- 260 (415)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC--CCCH----HHHHHHH-HHHHHhc----CCCCeEEEECC---CCCCHHHHHHHH---
Confidence 5555666777889999875421 1100 0012333 3344321 13443433331 235555444333
Q ss_pred HHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcC----CccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccC
Q 024292 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG----LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (269)
Q Consensus 155 L~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G----~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~ 230 (269)
++| +-.++.++..|-+ .+-++.+.+|++.- .--+.|=|.++...+.++++. ..++++|....-.-
T Consensus 261 -~~L--~~~~l~~iEEP~~---~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~-----~a~dil~~d~~~~G 329 (415)
T cd03324 261 -KQL--AEFKPWWIEEPTS---PDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA-----GAIDVVQIDSCRLG 329 (415)
T ss_pred -HHh--hccCCCEEECCCC---CCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc-----CCCCEEEeCccccC
Confidence 333 2346677777643 23466666776653 333455566788888887654 35788888876544
Q ss_pred CCcchhhHHHHHHHcCCeEEEcc
Q 024292 231 RKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~via~~ 253 (269)
--.+...+.++|+.+|+.++.++
T Consensus 330 Git~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 330 GVNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcC
Confidence 22222358999999999998874
No 53
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=78.72 E-value=49 Score=29.62 Aligned_cols=169 Identities=12% Similarity=0.124 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHH-HCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024292 73 KMKAAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 73 ~~~~~~~~l~~A~-~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l 151 (269)
++++..+.+...+ ..|++.||--..|+.-.. ..+-..+-++|+....+ +..+.|+--+...+..+.++.+ .+
T Consensus 88 ~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d---~~~~~~~~~al~~Lq~~--~p~l~vs~Tlp~~p~gl~~~g~--~~ 160 (294)
T cd06543 88 SADQLAAAYQKVIDAYGLTHLDFDIEGGALTD---TAAIDRRAQALALLQKE--YPDLKISFTLPVLPTGLTPDGL--NV 160 (294)
T ss_pred cHHHHHHHHHHHHHHhCCCeEEEeccCCcccc---chhHHHHHHHHHHHHHH--CCCcEEEEecCCCCCCCChhHH--HH
Confidence 3455555555555 459999998777764211 01124556777765432 2345555555444455554432 23
Q ss_pred HHHHHHhC--CCccceEEeecCCCC---C-hHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEccc
Q 024292 152 KDSLFRLG--LSSVELYQLHWAGIW---G-NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (269)
Q Consensus 152 ~~sL~~L~--~dyiDl~~lH~p~~~---~-~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~ 225 (269)
-+..+..| +|+|.++-+..-... + -..+..+.+.++.+=+--+=+ ++..++-.. .++.|.+=+..
T Consensus 161 l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~~~~------ig~TpMiG~nD 231 (294)
T cd06543 161 LEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAELWAM------IGVTPMIGVND 231 (294)
T ss_pred HHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHHHHH------ccccccccccC
Confidence 33444455 456666555432221 1 234445554444431111111 222222221 12333333333
Q ss_pred CC--ccCCCcchhhHHHHHHHcCCeEEEcccccCC
Q 024292 226 YS--LIYRKPEENGVKAACDELGITLIAYCPIAQD 258 (269)
Q Consensus 226 ~s--~~~~~~~~~~l~~~~~~~gi~via~~pl~~G 258 (269)
.. .+..... ..+.++++++||+.+.|..+.+-
T Consensus 232 ~~~e~ft~~da-~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 232 VGSEVFTLADA-QTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred CCCceeeHHHH-HHHHHHHHhCCCCeEeeeeccCC
Confidence 21 1221112 25899999999999998887653
No 54
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=78.59 E-value=26 Score=32.19 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=63.9
Q ss_pred CccceEE-eecCCC------------CChHHHHHHHHHHHH-cCC---ccEEEec--CcCHHHHHHHHHHHHhc---CCC
Q 024292 161 SSVELYQ-LHWAGI------------WGNEGFIDGLGDAVE-QGL---VKAVGVS--NYSEKRLRNAYEKLKKR---GIP 218 (269)
Q Consensus 161 dyiDl~~-lH~p~~------------~~~~~~~~~L~~l~~-~G~---ir~iGvS--n~~~~~l~~~~~~~~~~---~~~ 218 (269)
.++||.+ +|.++. ++.+++++++.+..+ .|. |+++=+. |.+.+.++++.++++.. +..
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 4578754 777653 345677777666655 342 3333332 66888999999988754 224
Q ss_pred eeEEcccCCccCCC------cch---hhHHHHHHHcCCeEEEcccccC
Q 024292 219 LASNQVNYSLIYRK------PEE---NGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 219 ~~~~Q~~~s~~~~~------~~~---~~l~~~~~~~gi~via~~pl~~ 257 (269)
..++-++||++... +.. ..+.+..+++|+.+......+.
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 330 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGS 330 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 67888999987532 111 2467778889999998887654
No 55
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=78.55 E-value=12 Score=31.87 Aligned_cols=89 Identities=11% Similarity=0.027 Sum_probs=59.1
Q ss_pred cceEEeecCCCCChHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHH
Q 024292 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (269)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~ 241 (269)
.++.++..|-+ . +-++.+.+|.+...+. ..+=|.++.+.+.++++. ..++++|+..+.+---.+-..+.++
T Consensus 120 ~~i~~iEeP~~--~-~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~-----~~~d~~~~k~~~~GGi~~~~~i~~~ 191 (229)
T cd00308 120 YGLAWIEEPCA--P-DDLEGYAALRRRTGIPIAADESVTTVDDALEALEL-----GAVDILQIKPTRVGGLTESRRAADL 191 (229)
T ss_pred cCCCeEECCCC--c-cCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEecCccccCCHHHHHHHHHH
Confidence 56777777643 2 2367777888877666 444555677777666543 2478888877665422222258899
Q ss_pred HHHcCCeEEEcccccCCc
Q 024292 242 CDELGITLIAYCPIAQDS 259 (269)
Q Consensus 242 ~~~~gi~via~~pl~~G~ 259 (269)
|+++|+.++..+.+..|+
T Consensus 192 a~~~gi~~~~~~~~~s~i 209 (229)
T cd00308 192 AEAFGIRVMVHGTLESSI 209 (229)
T ss_pred HHHcCCEEeecCCCCCHH
Confidence 999999999998766554
No 56
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=78.22 E-value=52 Score=29.96 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCC----------------CCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecC
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGS----------------RASFGAINSETLLGRFIKERKQRDPEVEVTVATKF 135 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~----------------g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~ 135 (269)
++.+...++.+.|-+.|+-+|=|-..+.. |+. .-..+|-...+ .. +.++++|=+
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~----~~~plik~iA~-~~-----kPiIlSTGm 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEI----NDLPLIKYIAK-KG-----KPIILSTGM 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccc----cChHHHHHHHh-cC-----CCEEEEccc
Confidence 45677888999999999999866433321 110 11233322222 22 578888876
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC--hHH-HHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHH
Q 024292 136 AALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEG-FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL 212 (269)
Q Consensus 136 ~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~--~~~-~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~ 212 (269)
. +-+.+.++++...++ |.. |+.++|+...+| .++ -+..|-.|.+.= ---||+|.|+...+.-+..++
T Consensus 157 a------~~~ei~~av~~~r~~-g~~--~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~AvA 226 (347)
T COG2089 157 A------TIEEIEEAVAILREN-GNP--DIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAAVA 226 (347)
T ss_pred c------cHHHHHHHHHHHHhc-CCC--CeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHHHH
Confidence 3 456677777754444 332 999999876544 332 244444444432 345999999887666665553
No 57
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=78.22 E-value=52 Score=29.66 Aligned_cols=132 Identities=18% Similarity=0.180 Sum_probs=77.6
Q ss_pred hhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 024292 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~ 150 (269)
..+.++..++++.+.+.|+..|.-. | |+.--...-.+++.. +++... -+++.|+|-.. . + ..
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~lt---G-GEPll~~~l~~li~~-i~~~~g---i~~v~itTNG~-----l----l-~~ 103 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLT---G-GEPLLRKDLVELVAR-LAALPG---IEDIALTTNGL-----L----L-AR 103 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE---C-ccccccCCHHHHHHH-HHhcCC---CCeEEEEeCch-----h----H-HH
Confidence 3567889999999999999877642 3 221000111333333 333210 13678888641 1 1 12
Q ss_pred HHHHHHHhCCCccceEEeecCCC----------CChHHHHHHHHHHHHcCCc--c--EEEecCcCHHHHHHHHHHHHhcC
Q 024292 151 LKDSLFRLGLSSVELYQLHWAGI----------WGNEGFIDGLGDAVEQGLV--K--AVGVSNYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 151 l~~sL~~L~~dyiDl~~lH~p~~----------~~~~~~~~~L~~l~~~G~i--r--~iGvSn~~~~~l~~~~~~~~~~~ 216 (269)
.-+.|.+.|+++|- +-++..++ ...+.+++.++.+++.|.- + .+-+.+.+.+++.++++.+...+
T Consensus 104 ~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~g 182 (334)
T TIGR02666 104 HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERG 182 (334)
T ss_pred HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 23456666765543 23443332 1357899999999999853 2 23334578889999999988877
Q ss_pred CCeeE
Q 024292 217 IPLAS 221 (269)
Q Consensus 217 ~~~~~ 221 (269)
+.+.+
T Consensus 183 v~~~~ 187 (334)
T TIGR02666 183 VTLRF 187 (334)
T ss_pred CeEEE
Confidence 65433
No 58
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=77.48 E-value=16 Score=31.03 Aligned_cols=80 Identities=19% Similarity=0.119 Sum_probs=50.9
Q ss_pred HHhCCCccceEEee-cCCCCChHHHHHHHHHHHHcCC-ccEEEec-CcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCC
Q 024292 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGL-VKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (269)
Q Consensus 156 ~~L~~dyiDl~~lH-~p~~~~~~~~~~~L~~l~~~G~-ir~iGvS-n~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~ 232 (269)
..+|.||+=+.+.- +|...+.+. ..++.+.-. ++.+||. |.+.+.+.++++. ..++.+|++-.
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs~~~----a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~-----~~ld~VQlHG~----- 84 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVSPEQ----AREIASAVPKVKVVGVFVNESIEEILEIAEE-----LGLDAVQLHGD----- 84 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCCHHH----HHHHHHhCCCCCEEEEECCCCHHHHHHHHHh-----cCCCEEEECCC-----
Confidence 46899998776665 444344433 333333333 8899987 5588888888776 67999999864
Q ss_pred cchhhHHHHHHHcC-CeEE
Q 024292 233 PEENGVKAACDELG-ITLI 250 (269)
Q Consensus 233 ~~~~~l~~~~~~~g-i~vi 250 (269)
+..+.++..++.. +.|+
T Consensus 85 -e~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 85 -EDPEYIDQLKEELGVPVI 102 (208)
T ss_pred -CCHHHHHHHHhhcCCceE
Confidence 2223566665553 5554
No 59
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=77.36 E-value=48 Score=28.79 Aligned_cols=168 Identities=10% Similarity=-0.014 Sum_probs=91.5
Q ss_pred ccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHH-HCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCC
Q 024292 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEV 127 (269)
Q Consensus 49 s~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~-~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~ 127 (269)
|+|-+||..+.+. +++..|+ .+|-..+=.|----+.... ..+.-+ +.-. +++
T Consensus 9 SRL~lGTgky~s~-----------------~~m~~ai~aSg~evvTvalRR~~~~~~---~~~~~~---~~~i----~~~ 61 (247)
T PF05690_consen 9 SRLILGTGKYPSP-----------------EVMREAIEASGAEVVTVALRRVNLGSK---PGGDNI---LDYI----DRS 61 (247)
T ss_dssp -SEEEE-STSSSH-----------------HHHHHHHHHTT-SEEEEECCGSTTTS----TTCHHC---CCCT----TCC
T ss_pred cceEEecCCCCCH-----------------HHHHHHHHHhCCcEEEEEEecccCCCC---CCCccH---HHHh----ccc
Confidence 7788999876442 3556666 4577776554222111000 001111 1111 234
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CChHHHHHHHHHHHHcCCccEEEecCcCHHHH
Q 024292 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (269)
Q Consensus 128 ~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l 205 (269)
++.+.-... ...+.+...+-.+-..+.++++.|-|=.+..+.. .++.+++++-++|+++|-+- +=.++-++-..
T Consensus 62 ~~~lLPNTa---Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~a 137 (247)
T PF05690_consen 62 GYTLLPNTA---GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLA 137 (247)
T ss_dssp TSEEEEE-T---T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HHHH
T ss_pred CCEECCcCC---CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHHHH
Confidence 554443321 3577887777888888889999998877776654 35789999999999999654 44455566666
Q ss_pred HHHHHHHHhcCCCeeEEcccCCccCCCcc--h-hhHHHHHHHcCCeEEEcc
Q 024292 206 RNAYEKLKKRGIPLASNQVNYSLIYRKPE--E-NGVKAACDELGITLIAYC 253 (269)
Q Consensus 206 ~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~--~-~~l~~~~~~~gi~via~~ 253 (269)
+++.+. -..+++.-=+|+-.... . .-+...+++.+|+||.=.
T Consensus 138 krL~d~------GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA 182 (247)
T PF05690_consen 138 KRLEDA------GCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA 182 (247)
T ss_dssp HHHHHT------T-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES
T ss_pred HHHHHC------CCCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeC
Confidence 665443 46667666666654321 1 125566777799998744
No 60
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=77.29 E-value=18 Score=33.27 Aligned_cols=144 Identities=19% Similarity=0.173 Sum_probs=87.3
Q ss_pred ccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHC---CCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCC
Q 024292 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDN---GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (269)
Q Consensus 49 s~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~---Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~ 125 (269)
..+|-=|.++-.- +.......+.++..+++....+. =+-.+|..+..+.-. +.+ -+.+. .
T Consensus 28 ~~~C~RC~~l~hy---~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~-------~~l-~~~~~--~---- 90 (360)
T TIGR03597 28 EVYCQRCFRLKHY---NEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLI-------PEL-KRFVG--G---- 90 (360)
T ss_pred Ceeecchhhhhcc---CccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCcc-------HHH-HHHhC--C----
Confidence 4567777765442 22111223456666666655432 223557544433311 222 22222 1
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHH
Q 024292 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (269)
Q Consensus 126 R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l 205 (269)
..-++|.+|+-..+.....+.+.+.+.+.++.++....|++.+-.-.....+++++.|.++.+.+.|-.+|.+|..-..+
T Consensus 91 ~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 91 NPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred CCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 35788999986544445566777777777777876545777766555577889999998887777899999999976555
Q ss_pred HHHH
Q 024292 206 RNAY 209 (269)
Q Consensus 206 ~~~~ 209 (269)
-..+
T Consensus 171 iN~l 174 (360)
T TIGR03597 171 INKL 174 (360)
T ss_pred HHHH
Confidence 4443
No 61
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=77.01 E-value=43 Score=30.31 Aligned_cols=90 Identities=19% Similarity=0.131 Sum_probs=65.4
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHH
Q 024292 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (269)
Q Consensus 126 R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l 205 (269)
++++.++.|.... .-...+.+.+++..+.+|. ++.+ ..|...+.+...+.++.+..+| +-.|-++..++..+
T Consensus 23 ~~~i~~v~k~~~~---pf~~~~~~Gi~~aa~~~G~---~v~~-~~~~~~d~~~q~~~i~~li~~~-vdgIiv~~~d~~al 94 (336)
T PRK15408 23 AERIAFIPKLVGV---GFFTSGGNGAKEAGKELGV---DVTY-DGPTEPSVSGQVQLINNFVNQG-YNAIIVSAVSPDGL 94 (336)
T ss_pred CcEEEEEECCCCC---HHHHHHHHHHHHHHHHhCC---EEEE-ECCCCCCHHHHHHHHHHHHHcC-CCEEEEecCCHHHH
Confidence 5788888887432 2256778889999999984 5543 3344345566678899999875 88999988888877
Q ss_pred HHHHHHHHhcCCCeeEEc
Q 024292 206 RNAYEKLKKRGIPLASNQ 223 (269)
Q Consensus 206 ~~~~~~~~~~~~~~~~~Q 223 (269)
...++.+...++|+.++-
T Consensus 95 ~~~l~~a~~~gIpVV~~d 112 (336)
T PRK15408 95 CPALKRAMQRGVKVLTWD 112 (336)
T ss_pred HHHHHHHHHCCCeEEEeC
Confidence 888887777787765543
No 62
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=77.00 E-value=20 Score=33.03 Aligned_cols=90 Identities=13% Similarity=0.096 Sum_probs=59.6
Q ss_pred EEeecCCC------------CChHHHHHHHHHHHH-cCC---ccEEEec--CcCHHHHHHHHHHHHhcCCCeeEEcccCC
Q 024292 166 YQLHWAGI------------WGNEGFIDGLGDAVE-QGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (269)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~~L~~l~~-~G~---ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~s 227 (269)
+-||.+++ ++.+++++++.++.+ .|+ |+++=+. |.+.++++++.+.++. .++.++-++||
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPyn 296 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKG--TKCKVNLIPWN 296 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhc--CCCceEEEecc
Confidence 66898874 236888888887654 442 3344333 4567898888888764 34677778998
Q ss_pred ccCCCc----chh---hHHHHHHHcCCeEEEcccccC
Q 024292 228 LIYRKP----EEN---GVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 228 ~~~~~~----~~~---~l~~~~~~~gi~via~~pl~~ 257 (269)
++.... ... .+.+..+++|+.++.....+.
T Consensus 297 p~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 297 PFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 865322 111 356667778999999887654
No 63
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=76.92 E-value=8.3 Score=32.62 Aligned_cols=66 Identities=8% Similarity=0.007 Sum_probs=44.0
Q ss_pred HHHHhCCCccceEEee-cCCCCChHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHHHHHHhcCCCeeEEcccC
Q 024292 154 SLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH-~p~~~~~~~~~~~L~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~~~~~~Q~~~ 226 (269)
.+..+|.||+=+.+.. .|...+.+.+-+....+ .+.++.+||. |-+++.+.++++. ..++++|++-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~--~~~~~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQIKKLASAV--PNHIDKVCVVVNPDLTTIEHILSN-----TSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHh-----CCCCEEEECC
Confidence 3446999999887543 23334444443333333 3568899986 7788898888765 5789999975
No 64
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=76.16 E-value=35 Score=28.45 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHCCCCeeec
Q 024292 73 KMKAAKAAFDTSLDNGITFFDT 94 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DT 94 (269)
|++.+.+.++.+++.|+...|.
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i 30 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDI 30 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH
Confidence 5688999999999999876654
No 65
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=75.90 E-value=65 Score=29.56 Aligned_cols=89 Identities=9% Similarity=-0.079 Sum_probs=59.2
Q ss_pred cceEEeecCCCCChHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHH
Q 024292 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (269)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~ 241 (269)
.++.++..|-+ .+-++.+.+|++...+. +.|=|-++...+.++++. ..++++|+.....---.+-..+...
T Consensus 213 ~~~~~iEeP~~---~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~-----~~~d~~~~d~~~~GGi~~~~~i~~l 284 (368)
T TIGR02534 213 AGVELIEQPTP---AENREALARLTRRFNVPIMADESVTGPADALAIAKA-----SAADVFALKTTKSGGLLESKKIAAI 284 (368)
T ss_pred cChhheECCCC---cccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh-----CCCCEEEEcccccCCHHHHHHHHHH
Confidence 45666776643 23377777888776655 677778888888887654 3478888776654321222258999
Q ss_pred HHHcCCeEEEcccccCCc
Q 024292 242 CDELGITLIAYCPIAQDS 259 (269)
Q Consensus 242 ~~~~gi~via~~pl~~G~ 259 (269)
|+.+|+.++..+.+.+++
T Consensus 285 A~~~gi~~~~~~~~~s~i 302 (368)
T TIGR02534 285 AEAAGIALYGGTMLEGPI 302 (368)
T ss_pred HHHcCCceeeecchhhHH
Confidence 999999998765444443
No 66
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=75.44 E-value=49 Score=28.84 Aligned_cols=108 Identities=12% Similarity=0.006 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCh-HHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCee
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGN-EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~-~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (269)
.+++.+.+..++.++ -|.|+||+-. .|...+. ++..+.+..+++.-. .-|.|-+++++.++++++.+. | ..-
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~--G-~~i 95 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQ--G-KCV 95 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCC--C-CcE
Confidence 456667777776664 5999999865 2333232 333333333332212 237888999999999987631 2 223
Q ss_pred EEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCC
Q 024292 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQD 258 (269)
Q Consensus 221 ~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G 258 (269)
+|-+. ....+.....+++.+++.|..++.+..-..|
T Consensus 96 INsIs--~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 96 VNSIN--LEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred EEeCC--CCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 33222 2221111125889999999999987654344
No 67
>PRK05985 cytosine deaminase; Provisional
Probab=75.22 E-value=68 Score=29.51 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHCCCCeeec
Q 024292 75 KAAKAAFDTSLDNGITFFDT 94 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DT 94 (269)
..+...+..++..|++++-+
T Consensus 98 ~~a~~~~~~~l~~G~t~vr~ 117 (391)
T PRK05985 98 ERALALARAAAAAGTTAMRS 117 (391)
T ss_pred HHHHHHHHHHHhcCcceEEe
Confidence 45677789999999998733
No 68
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=74.84 E-value=58 Score=28.49 Aligned_cols=133 Identities=11% Similarity=0.114 Sum_probs=68.3
Q ss_pred ChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCC------------
Q 024292 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA------------ 137 (269)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~------------ 137 (269)
+.+|.+...+.++..++.|++-|-..-.-|-+.+-...+=++++..+.+... +++-|..-++.
T Consensus 13 g~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-----~~~~vi~gv~~~~~~~~i~~a~~ 87 (281)
T cd00408 13 GEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-----GRVPVIAGVGANSTREAIELARH 87 (281)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-----CCCeEEEecCCccHHHHHHHHHH
Confidence 3577889999999999999998754433332211011122355555555543 23333333331
Q ss_pred ------------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHH
Q 024292 138 ------------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEK 203 (269)
Q Consensus 138 ------------~~--~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~ 203 (269)
.| +..+.+.+.+.+++..+. ++ +.+++-|.|......=..+.+.+|.+...|..|=.|..+..
T Consensus 88 a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~--~~-~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s~~d~~ 164 (281)
T cd00408 88 AEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA--SD-LPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSSGDLD 164 (281)
T ss_pred HHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhc--CC-CCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeCCCCHH
Confidence 01 123445555555555554 22 55666666654222222344444444455555555555555
Q ss_pred HHHHHHH
Q 024292 204 RLRNAYE 210 (269)
Q Consensus 204 ~l~~~~~ 210 (269)
.+.++.+
T Consensus 165 ~~~~~~~ 171 (281)
T cd00408 165 RLTRLIA 171 (281)
T ss_pred HHHHHHH
Confidence 5555543
No 69
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=74.07 E-value=55 Score=31.67 Aligned_cols=106 Identities=17% Similarity=0.109 Sum_probs=61.3
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC--hHHHHHHHHHHH
Q 024292 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAV 187 (269)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~--~~~~~~~L~~l~ 187 (269)
|+.|-++|++...+.+.+-++|.|=+ ..+-|-..++...+.++.+.++++.++.|.... ....-.+|+.++
T Consensus 70 ~~~L~~aI~~~~~~~~P~~I~V~sTC-------~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv 142 (511)
T TIGR01278 70 QTRLVDTVRRVDDRFKPDLIVVTPSC-------TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLV 142 (511)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC-------hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHH
Confidence 77777888876533223445555544 244454555555666665568899999887522 122222332222
Q ss_pred --------------HcCCccEEEecCc---CHHHHHHHHHHHHhcCCCeeEE
Q 024292 188 --------------EQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 188 --------------~~G~ir~iGvSn~---~~~~l~~~~~~~~~~~~~~~~~ 222 (269)
+.+.|--||.++. .+..+.++.++.+..|+.+.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v 194 (511)
T TIGR01278 143 RRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVV 194 (511)
T ss_pred HHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 2355778898763 4566667777777777665444
No 70
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=73.77 E-value=73 Score=29.21 Aligned_cols=155 Identities=8% Similarity=-0.068 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~ 153 (269)
.++..+.++.+.+.|++.|=.- .++...- ....+.+ +++++.-. +++-|.-=.. ..++.+...+-+ +
T Consensus 144 ~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~---~~di~~i-~~vR~~~G----~~~~l~vDan---~~~~~~~A~~~~-~ 210 (368)
T cd03329 144 PEAYADFAEECKALGYRAIKLH-PWGPGVV---RRDLKAC-LAVREAVG----PDMRLMHDGA---HWYSRADALRLG-R 210 (368)
T ss_pred HHHHHHHHHHHHHcCCCEEEEe-cCCchhH---HHHHHHH-HHHHHHhC----CCCeEEEECC---CCcCHHHHHHHH-H
Confidence 4666777788899999988652 1211000 0002223 33443211 2333333221 234444333222 2
Q ss_pred HHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCcc-EEEecCcC-HHHHHHHHHHHHhcCCCeeEEcccCCccCC
Q 024292 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYS-EKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvSn~~-~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~ 231 (269)
.|+. .++.++..|- +..+ ++.+.+|+++-.|. ..|=+-++ +..++++++. -.++++|+..+.+--
T Consensus 211 ~l~~-----~~l~~iEeP~--~~~d-~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~-----~a~d~v~~d~~~~GG 277 (368)
T cd03329 211 ALEE-----LGFFWYEDPL--REAS-ISSYRWLAEKLDIPILGTEHSRGALESRADWVLA-----GATDFLRADVNLVGG 277 (368)
T ss_pred Hhhh-----cCCCeEeCCC--Cchh-HHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHh-----CCCCEEecCccccCC
Confidence 2333 3556666653 3333 47788888875554 23334456 7777777664 257888888776432
Q ss_pred CcchhhHHHHHHHcCCeEEEccc
Q 024292 232 KPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 232 ~~~~~~l~~~~~~~gi~via~~p 254 (269)
-.+-..+...|+++|+.++.++.
T Consensus 278 it~~~~ia~~a~~~gi~~~~h~~ 300 (368)
T cd03329 278 ITGAMKTAHLAEAFGLDVELHGN 300 (368)
T ss_pred HHHHHHHHHHHHHcCCEEEEECh
Confidence 22223599999999999987653
No 71
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=73.08 E-value=55 Score=28.09 Aligned_cols=120 Identities=8% Similarity=-0.020 Sum_probs=61.3
Q ss_pred CChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCC-CCCCHHHH
Q 024292 69 WDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALP-WRLGRQSV 147 (269)
Q Consensus 69 ~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~-~~~~~~~i 147 (269)
.++.+.|+..++++.|.+.|++-+=..++|-+|.-+ .+++.+-+.+.+..... ++.-|--|+-+-+ -..+.+.+
T Consensus 14 DGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~---n~~~~v~~~~~~ln~~~--~~~aidl~v~pGQEIrIt~~vl 88 (254)
T COG4464 14 DGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYE---NPIEKVKEKANQLNEIL--KKEAIDLKVLPGQEIRITGDVL 88 (254)
T ss_pred CCCCcHHHHHHHHHHHHHcCceEEeecccccCCccC---ChHHHHHHHHHHHHHHH--HhhcCCceeccCceEEEchHHH
Confidence 345667999999999999999987766677665431 22444444444332110 1111111221100 01222222
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEE
Q 024292 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAV 195 (269)
Q Consensus 148 ~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~i 195 (269)
..--+..+--++ |. +-+++..|-....+.+-+.|-+|+-.|-+-=|
T Consensus 89 ~~l~~g~I~tin-ds-kYlLIEF~~~~v~~ya~~lf~elq~kGi~PII 134 (254)
T COG4464 89 DDLDKGIILTIN-DS-KYLLIEFPMNHVPRYADQLFFELQSKGIIPII 134 (254)
T ss_pred HHHhcCcccccc-cc-ceEEEEccCCcchhhHHHHHHHHHHCCceeee
Confidence 222222222232 22 44566665544566777777788877765443
No 72
>PRK07534 methionine synthase I; Validated
Probab=72.83 E-value=76 Score=28.97 Aligned_cols=97 Identities=14% Similarity=0.047 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCC----CCCCchHHHHHHHHh---hccCCCCCCcEEEEecCCCCCC------
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRAS----FGAINSETLLGRFIK---ERKQRDPEVEVTVATKFAALPW------ 140 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~----~~~~~sE~~lG~al~---~~~~~~~R~~v~I~tK~~~~~~------ 140 (269)
++...++=+..+++|-+.|=|.....+... ......+++.-.+++ +.... .+.+++|+-=+|+...
T Consensus 44 Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~-~~~~~~VaGsIGP~g~~l~~~~ 122 (336)
T PRK07534 44 PDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADK-AGRKVIVAGSVGPTGEIMEPMG 122 (336)
T ss_pred HHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh-cCCccEEEEecCCCccccCCCC
Confidence 466777777788999999987654333100 000012233333332 11100 0135788888887421
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecC
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWA 171 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p 171 (269)
..+.+.+.+...+.++.|--.-+|++++--.
T Consensus 123 ~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~ 153 (336)
T PRK07534 123 ALTHALAVEAFHEQAEGLKAGGADVLWVETI 153 (336)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 2456778888888888884456999999853
No 73
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=72.74 E-value=24 Score=30.05 Aligned_cols=102 Identities=17% Similarity=0.192 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCee
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (269)
++.+... .+-+.|.++|.++|++- .|.. ....+.++.+.+.... .+-.+++....+.++.+++.+...+....
T Consensus 11 ~~~~~k~-~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEKL-EIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHHH-HHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHHH-HHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 4445444 44456889999998887 2211 1233444445444444 45556666677777776665555665444
Q ss_pred EEcccCCccCCC------cc-----hhhHHHHHHHcCCeE
Q 024292 221 SNQVNYSLIYRK------PE-----ENGVKAACDELGITL 249 (269)
Q Consensus 221 ~~Q~~~s~~~~~------~~-----~~~l~~~~~~~gi~v 249 (269)
.+-...|..... .+ -...++++++.|..+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 333444431110 00 014677777888777
No 74
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=72.13 E-value=32 Score=29.17 Aligned_cols=24 Identities=0% Similarity=-0.112 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecc
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA 95 (269)
.|++.+.++++.|++.|+...|+-
T Consensus 12 ~D~~~~~~~l~~al~~~~~~~~ii 35 (213)
T cd02069 12 GIRDGIEEDTEEARQQYARPLEII 35 (213)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 356889999999999997766553
No 75
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=71.83 E-value=29 Score=32.60 Aligned_cols=106 Identities=11% Similarity=0.026 Sum_probs=57.2
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC-----ccceEEeecCCCCC-----hHHH
Q 024292 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS-----SVELYQLHWAGIWG-----NEGF 179 (269)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d-----yiDl~~lH~p~~~~-----~~~~ 179 (269)
|+.|-++|++...+.+.+-++|.|=+.. .. +-..++...++++.+ -+.++.+|.|+... .+.+
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~v~~tC~~---~l----iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a 138 (428)
T cd01965 66 EDNLIEALKNLLSRYKPDVIGVLTTCLT---ET----IGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNA 138 (428)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcch---hh----cCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHH
Confidence 7777788887654322345666666532 22 222333333344321 35678888876522 2333
Q ss_pred HHHHHHH-------HHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEE
Q 024292 180 IDGLGDA-------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 180 ~~~L~~l-------~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~ 222 (269)
+++|-+. ++.++|--||-++.+...++++.++.+..|+++.++
T Consensus 139 ~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 139 VKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred HHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 4444322 234567778777664444566666667777665443
No 76
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=70.90 E-value=70 Score=27.72 Aligned_cols=88 Identities=15% Similarity=0.073 Sum_probs=47.3
Q ss_pred HHHHhCCCccceEEeecCCC--CChHHHHHHHHHHHHcCCccEEEecCc-CHHHHHHHHHHHHhcCCCeeEEcccCCccC
Q 024292 154 SLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~ 230 (269)
-|+.+|. |.+.+|..+. ....--++.+.++++.-.+.-|..-.. +++.+.++++. . ..+.+.+-=-+.+
T Consensus 163 ~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~---g--~~dgv~~g~a~~~ 234 (254)
T TIGR00735 163 EVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTK---G--KADAALAASVFHY 234 (254)
T ss_pred HHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc---C--CcceeeEhHHHhC
Confidence 3445554 6666676543 111223556666666656666666554 67788877654 1 1333222111111
Q ss_pred CCcchhhHHHHHHHcCCeE
Q 024292 231 RKPEENGVKAACDELGITL 249 (269)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~v 249 (269)
..-.-.++.+.|+++||.+
T Consensus 235 ~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 235 REITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCCCHHHHHHHHHHCCCcc
Confidence 1112235899999999864
No 77
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=70.24 E-value=80 Score=28.95 Aligned_cols=138 Identities=14% Similarity=0.116 Sum_probs=82.4
Q ss_pred HHHHHHHhhccC--CCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC-CCccceEEeecCCC------------CC
Q 024292 111 TLLGRFIKERKQ--RDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGI------------WG 175 (269)
Q Consensus 111 ~~lG~al~~~~~--~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~-~dyiDl~~lH~p~~------------~~ 175 (269)
..+-++++.... ..+...+.|+| +|. .+.+++-.+.-+++|+ .+....+-||.+++ ++
T Consensus 165 ~~v~~~i~~l~~~~~i~~r~itvST-~G~------~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~ 237 (345)
T PRK14457 165 DEVLAAIRCLNQDLGIGQRRITVST-VGV------PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYP 237 (345)
T ss_pred HHHHHHHHHHhcccCCccCceEEEC-CCc------hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCC
Confidence 334456655421 11223677777 332 1223333333333432 34457788998875 34
Q ss_pred hHHHHHHHHH-HHHcCC---ccEEEec--CcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCc----chh---hHHHHH
Q 024292 176 NEGFIDGLGD-AVEQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP----EEN---GVKAAC 242 (269)
Q Consensus 176 ~~~~~~~L~~-l~~~G~---ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~----~~~---~l~~~~ 242 (269)
.+++++++.+ +.+.|+ ++++=+. |.+.+.++++.+.++. .+..++-++||++.... ... .+.+..
T Consensus 238 l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~--l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L 315 (345)
T PRK14457 238 IENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRG--FQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVL 315 (345)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhc--CCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 6778878766 455563 4555454 5678999999888764 34578889999875422 221 356677
Q ss_pred HHcCCeEEEcccccC
Q 024292 243 DELGITLIAYCPIAQ 257 (269)
Q Consensus 243 ~~~gi~via~~pl~~ 257 (269)
+++|+.+......+.
T Consensus 316 ~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 316 EQRGVAVSVRASRGL 330 (345)
T ss_pred HHCCCeEEEeCCCCC
Confidence 778999998877654
No 78
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=70.16 E-value=63 Score=28.02 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=53.1
Q ss_pred HHHHhCCCccceEEeecCC-----CCChHHHHHHHHHHHHcCC-ccEEEecCc--------C-------HHHHHHHHHHH
Q 024292 154 SLFRLGLSSVELYQLHWAG-----IWGNEGFIDGLGDAVEQGL-VKAVGVSNY--------S-------EKRLRNAYEKL 212 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~-----~~~~~~~~~~L~~l~~~G~-ir~iGvSn~--------~-------~~~l~~~~~~~ 212 (269)
..+.+|.|+|++..-...+ .++..+.-+..+.+.+.|. |-.++++++ + .+.++++++.+
T Consensus 24 ~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a 103 (284)
T PRK13210 24 FAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLA 103 (284)
T ss_pred HHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4458999999986432111 1233344444455667774 445544432 2 24567888888
Q ss_pred HhcCCCeeEEcccCCcc-CCCcch---------hhHHHHHHHcCCeEEE
Q 024292 213 KKRGIPLASNQVNYSLI-YRKPEE---------NGVKAACDELGITLIA 251 (269)
Q Consensus 213 ~~~~~~~~~~Q~~~s~~-~~~~~~---------~~l~~~~~~~gi~via 251 (269)
...|.+..++- .+... .+..+. ..+.+.++++||.+..
T Consensus 104 ~~lG~~~v~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 151 (284)
T PRK13210 104 QDLGIRTIQLA-GYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV 151 (284)
T ss_pred HHhCCCEEEEC-CcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 88887655432 22111 111110 2578888899996553
No 79
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=69.97 E-value=21 Score=33.36 Aligned_cols=85 Identities=9% Similarity=-0.079 Sum_probs=59.9
Q ss_pred cceEEeecCCCCChHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHH
Q 024292 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (269)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~ 241 (269)
.++.++..|-+ .+-++.+.+|++.-.|. +.|=|-++...++++++. .-++++|+...-.---.+-..+.++
T Consensus 232 ~~l~~iEeP~~---~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~-----~a~dii~~d~~~~GGit~~~kia~l 303 (404)
T PRK15072 232 YRLFWLEDPTP---AENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEE-----QLIDYIRTTVTHAGGITHLRRIADF 303 (404)
T ss_pred cCCcEEECCCC---ccCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHc-----CCCCEEecCccccCcHHHHHHHHHH
Confidence 47777777643 23367888888876665 677777888888888664 3478888877654322222258999
Q ss_pred HHHcCCeEEEcccc
Q 024292 242 CDELGITLIAYCPI 255 (269)
Q Consensus 242 ~~~~gi~via~~pl 255 (269)
|+.+|+.++.++..
T Consensus 304 A~~~gi~~~~h~~~ 317 (404)
T PRK15072 304 AALYQVRTGSHGPT 317 (404)
T ss_pred HHHcCCceeeccCc
Confidence 99999999987554
No 80
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=69.55 E-value=91 Score=28.97 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=65.7
Q ss_pred eEEeecCCC------------CChHHHHHHHHHHH-HcCC---ccEEEec--CcCHHHHHHHHHHHHhcC-CCeeEEccc
Q 024292 165 LYQLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVS--NYSEKRLRNAYEKLKKRG-IPLASNQVN 225 (269)
Q Consensus 165 l~~lH~p~~------------~~~~~~~~~L~~l~-~~G~---ir~iGvS--n~~~~~l~~~~~~~~~~~-~~~~~~Q~~ 225 (269)
.+-||.++. ++.+++++++.+.. +.|+ |+++=+. |.+.++++++.++++... .+..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 467898875 34789999988887 4464 4455455 557888888888876442 256889999
Q ss_pred CCccCCCc----ch---hhHHHHHHHcCCeEEEcccccCC
Q 024292 226 YSLIYRKP----EE---NGVKAACDELGITLIAYCPIAQD 258 (269)
Q Consensus 226 ~s~~~~~~----~~---~~l~~~~~~~gi~via~~pl~~G 258 (269)
||++.... .. ....+..+++||.+......+.-
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcC
Confidence 99965422 11 14777788899999998877543
No 81
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=69.22 E-value=34 Score=27.63 Aligned_cols=91 Identities=11% Similarity=0.059 Sum_probs=62.6
Q ss_pred EEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcc----hhhHHHH
Q 024292 166 YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE----ENGVKAA 241 (269)
Q Consensus 166 ~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~----~~~l~~~ 241 (269)
+|+..|.....+++++.--+=-++.-|++|=|.+-+.....++++..+.. +.++-+.|+.....+. +.++.+.
T Consensus 2 ~yf~~pG~eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~---lkvVvVthh~Gf~e~g~~e~~~E~~~~ 78 (186)
T COG1751 2 VYFEKPGKENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD---LKVVVVTHHAGFEEKGTQEMDEEVRKE 78 (186)
T ss_pred ccccCCcccchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC---ceEEEEEeecccccCCceecCHHHHHH
Confidence 45666665566778887777777888999999988888888888775422 3344444544443332 2368999
Q ss_pred HHHcCCeEEEcccccCCc
Q 024292 242 CDELGITLIAYCPIAQDS 259 (269)
Q Consensus 242 ~~~~gi~via~~pl~~G~ 259 (269)
.+++|..|+.-|-.-+|.
T Consensus 79 L~erGa~v~~~sHalSg~ 96 (186)
T COG1751 79 LKERGAKVLTQSHALSGV 96 (186)
T ss_pred HHHcCceeeeehhhhhcc
Confidence 999999998876555544
No 82
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=69.20 E-value=86 Score=28.08 Aligned_cols=141 Identities=15% Similarity=0.078 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCC---CC--CchHHHHHHHHhhcc---CCCCCCcEEEEecCCCCC------
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASF---GA--INSETLLGRFIKERK---QRDPEVEVTVATKFAALP------ 139 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~---~~--~~sE~~lG~al~~~~---~~~~R~~v~I~tK~~~~~------ 139 (269)
++...++-+..+++|-+.|.|.....+...- +. ...+++.-.+++-.. ....|.+++|+-=+|+..
T Consensus 45 Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~~ 124 (304)
T PRK09485 45 PELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLADG 124 (304)
T ss_pred hHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCCC
Confidence 4566777777889999999987655441100 00 012344444443111 000122588888888632
Q ss_pred ------CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-----------------C---------------hHHHHH
Q 024292 140 ------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----------------G---------------NEGFID 181 (269)
Q Consensus 140 ------~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~-----------------~---------------~~~~~~ 181 (269)
...+.+.+.+...+..+.|--.-+|++++--.... + -..+-+
T Consensus 125 ~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~~~ 204 (304)
T PRK09485 125 SEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGTPLAE 204 (304)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCHHH
Confidence 12467888888888888885556999999743210 0 011233
Q ss_pred HHHHHHHcCCccEEEecCcCHHHHHHHHHHHHh
Q 024292 182 GLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (269)
Q Consensus 182 ~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 214 (269)
+++.+.+.+.+-.||+-+..++.+..+++.+..
T Consensus 205 ~~~~l~~~~~~~~iGiNC~~p~~~~~~l~~~~~ 237 (304)
T PRK09485 205 AAALLAASPQVVAVGVNCTAPELVTAAIAALRA 237 (304)
T ss_pred HHHHHhcCCCceEEEecCCCHHHHHHHHHHHHh
Confidence 333333445567777776677777777766543
No 83
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=69.04 E-value=93 Score=28.43 Aligned_cols=84 Identities=10% Similarity=0.012 Sum_probs=48.4
Q ss_pred CcEEEEecCCCCC---CCCCHHHHHHHHHHHHHHhCCCccce-EEeec-CCC-----CChHHHHHHHHHHHHcCCccEEE
Q 024292 127 VEVTVATKFAALP---WRLGRQSVLAALKDSLFRLGLSSVEL-YQLHW-AGI-----WGNEGFIDGLGDAVEQGLVKAVG 196 (269)
Q Consensus 127 ~~v~I~tK~~~~~---~~~~~~~i~~~l~~sL~~L~~dyiDl-~~lH~-p~~-----~~~~~~~~~L~~l~~~G~ir~iG 196 (269)
.++.|..|++... ...+.+... .+-+-|+.+|+|||++ ...|. +.. .+.........++++.=.+.=++
T Consensus 203 ~d~~v~iRi~~~D~~~~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~ 281 (353)
T cd02930 203 EDFIIIYRLSMLDLVEGGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIA 281 (353)
T ss_pred CCceEEEEecccccCCCCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEE
Confidence 5778888886522 124444443 3334577889888887 22242 111 11122344556777766666666
Q ss_pred ecCc-CHHHHHHHHHH
Q 024292 197 VSNY-SEKRLRNAYEK 211 (269)
Q Consensus 197 vSn~-~~~~l~~~~~~ 211 (269)
.-+. +++.++++++.
T Consensus 282 ~G~i~~~~~a~~~i~~ 297 (353)
T cd02930 282 SNRINTPEVAERLLAD 297 (353)
T ss_pred cCCCCCHHHHHHHHHC
Confidence 6554 78888888664
No 84
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=68.89 E-value=70 Score=29.52 Aligned_cols=88 Identities=15% Similarity=0.096 Sum_probs=60.6
Q ss_pred eecCCC------------CChHHHHHHHHHHH-HcCC---ccEEEec--CcCHHHHHHHHHHHHhcCCCeeEEcccCCcc
Q 024292 168 LHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (269)
Q Consensus 168 lH~p~~------------~~~~~~~~~L~~l~-~~G~---ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~ 229 (269)
||.+++ ++.+++++++.++. +.|+ |+++=+. |.+.+.++++.+.++. .+..++-++||++
T Consensus 226 Lha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPyn~~ 303 (356)
T PRK14462 226 LHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNG--IKAKVNLILFNPH 303 (356)
T ss_pred CCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhh--cCcEEEEEeCCCC
Confidence 898875 34577899888665 5554 5555555 5578999999888764 3568888999987
Q ss_pred CCC----cchh---hHHHHHHHcCCeEEEcccccC
Q 024292 230 YRK----PEEN---GVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 230 ~~~----~~~~---~l~~~~~~~gi~via~~pl~~ 257 (269)
... +..+ .+.+..+++||.+......+.
T Consensus 304 ~~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~ 338 (356)
T PRK14462 304 EGSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGL 338 (356)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 632 2221 355566778999999887654
No 85
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=68.74 E-value=32 Score=30.20 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-------CChHHHHHHHHHHHHcCCccEEEecCc
Q 024292 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (269)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~-------~~~~~~~~~L~~l~~~G~ir~iGvSn~ 200 (269)
+.++.+... .+-+.|.++|+|+|++-+...... +...+.++.+.++.+ +..+..+++..
T Consensus 15 ~~f~~~~~~-~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~ 80 (266)
T cd07944 15 WDFGDEFVK-AIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDY 80 (266)
T ss_pred ccCCHHHHH-HHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECC
Confidence 456666554 455569999999999887654321 123555666655543 23555554433
No 86
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=68.24 E-value=15 Score=31.87 Aligned_cols=78 Identities=22% Similarity=0.364 Sum_probs=48.7
Q ss_pred CCCcccccceecccc---cCCCCcCCCCCCChhhHHHHHHHHHHHH----HCCCCeeeccc--c-cCCCCCCCCCchHHH
Q 024292 43 GSDLKVTKLGVGAWS---WGDTSYWNNFQWDDRKMKAAKAAFDTSL----DNGITFFDTAE--V-YGSRASFGAINSETL 112 (269)
Q Consensus 43 ~tg~~vs~lglG~~~---~g~~~~~~~~~~~~~~~~~~~~~l~~A~----~~Gin~~DTA~--~-Yg~g~~~~~~~sE~~ 112 (269)
.+|+.+|.+||..-+ ||+. ++..++++.+++..|+ +.|||.|--|- . |... + |+.
T Consensus 65 etgv~ipSmClSaHRRfPfGS~--------D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~-d------~eT 129 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSK--------DEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEA-D------EET 129 (287)
T ss_pred HhCCCccchhhhhhccCCCCCC--------CHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccC-C------HHH
Confidence 479999999998754 4432 3455677777777665 78999998773 2 3332 2 555
Q ss_pred HHHHHhhccCC---CCCCcEEEEecC
Q 024292 113 LGRFIKERKQR---DPEVEVTVATKF 135 (269)
Q Consensus 113 lG~al~~~~~~---~~R~~v~I~tK~ 135 (269)
..+++...... -.|-.|.++--+
T Consensus 130 ~~rFi~g~~~a~~lA~~aqV~lAvEi 155 (287)
T COG3623 130 RQRFIEGLKWAVELAARAQVMLAVEI 155 (287)
T ss_pred HHHHHHHHHHHHHHHHhhccEEEeee
Confidence 55665543211 025677777665
No 87
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=68.10 E-value=69 Score=28.00 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=58.7
Q ss_pred HHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCC--------CHHHHHHH
Q 024292 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRL--------GRQSVLAA 150 (269)
Q Consensus 79 ~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~--------~~~~i~~~ 150 (269)
+++++|++.|..+|..-..-.. ...+-+.+++++ -.+++...-+. |... -.+.+.+.
T Consensus 87 ~v~e~al~~G~~iINdisg~~~---------~~~~~~l~~~~~-----~~vV~m~~~g~-p~~~~~~~~~~~~~~~~~~~ 151 (257)
T cd00739 87 EVARAALEAGADIINDVSGGSD---------DPAMLEVAAEYG-----APLVLMHMRGT-PKTMQENPYYEDVVDEVLSF 151 (257)
T ss_pred HHHHHHHHhCCCEEEeCCCCCC---------ChHHHHHHHHcC-----CCEEEECCCCC-CcccccCCCcccHHHHHHHH
Confidence 4677888889888864432221 123346667664 46666544332 2110 12334444
Q ss_pred HHH---HHHHhCCC----ccceEEeecCCC-CChHHHHHHHHHHHHcCCccEEEecCcC
Q 024292 151 LKD---SLFRLGLS----SVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (269)
Q Consensus 151 l~~---sL~~L~~d----yiDl~~lH~p~~-~~~~~~~~~L~~l~~~G~ir~iGvSn~~ 201 (269)
+++ .+++.|++ ++|-.+- .... ...-++++.++++++.|.=-.+|+||-+
T Consensus 152 ~~~~i~~~~~~Gi~~~~Ii~DPg~g-f~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 152 LEARLEAAESAGVARNRIILDPGIG-FGKTPEHNLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHHHHHHHcCCCHHHEEEecCCC-cccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 443 34455766 4454220 0100 1234678888888888887799999954
No 88
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=68.03 E-value=40 Score=29.23 Aligned_cols=98 Identities=11% Similarity=0.178 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCccceEEeecCCC-CChHHHHHHH-HHHHHcCCccEEEecCc-----CHHHHHHHHHHHHhcCCCeeE
Q 024292 149 AALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGL-GDAVEQGLVKAVGVSNY-----SEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 149 ~~l~~sL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L-~~l~~~G~ir~iGvSn~-----~~~~l~~~~~~~~~~~~~~~~ 221 (269)
+.+++.|+-.| +|||.+-+-|-.. .-++++++.. +-.++.|.--+.| -++ ....++++++.|+..| |++
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lG--f~~ 87 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELG--FEA 87 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcC--CCE
Confidence 46666777777 6888888877544 2223333333 3334445444555 111 1234555555555544 444
Q ss_pred EcccCCccCCCcch-hhHHHHHHHcCCeEE
Q 024292 222 NQVNYSLIYRKPEE-NGVKAACDELGITLI 250 (269)
Q Consensus 222 ~Q~~~s~~~~~~~~-~~l~~~~~~~gi~vi 250 (269)
+.+.=..++-..++ ..+++.++++|..+.
T Consensus 88 IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 88 VEISDGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 44433333322222 146666666665554
No 89
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=67.65 E-value=67 Score=26.66 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=26.1
Q ss_pred ccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHH
Q 024292 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (269)
Q Consensus 162 yiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l 205 (269)
.+|.++||..++ .+..+.+.+......++.||++++....+
T Consensus 73 ~~d~Vqlhg~e~---~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES---PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC---HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 368889998642 23344444433346789999998865443
No 90
>PLN02363 phosphoribosylanthranilate isomerase
Probab=67.47 E-value=19 Score=31.55 Aligned_cols=81 Identities=14% Similarity=0.019 Sum_probs=49.9
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEee-cCCCCChHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHH
Q 024292 132 ATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAY 209 (269)
Q Consensus 132 ~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH-~p~~~~~~~~~~~L~~l~~~G~ir~iGvS-n~~~~~l~~~~ 209 (269)
..|+|. -.+.+.++.+. ++|.|||=+.+.. .|...+.+.+-+.... .....++.+||. |-+++.+.+++
T Consensus 48 ~VKICG---it~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~-l~~~~~~~VgVfv~~~~~~I~~~~ 118 (256)
T PLN02363 48 LVKMCG---ITSARDAAMAV-----EAGADFIGMILWPKSKRSISLSVAKEISQV-AREGGAKPVGVFVDDDANTILRAA 118 (256)
T ss_pred eEEECC---CCcHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHHHHHHHHHh-ccccCccEEEEEeCCCHHHHHHHH
Confidence 357764 23455554444 5899999886533 2332444444333333 333246789986 77888888887
Q ss_pred HHHHhcCCCeeEEcccC
Q 024292 210 EKLKKRGIPLASNQVNY 226 (269)
Q Consensus 210 ~~~~~~~~~~~~~Q~~~ 226 (269)
+. ..++++|++-
T Consensus 119 ~~-----~~ld~VQLHG 130 (256)
T PLN02363 119 DS-----SDLELVQLHG 130 (256)
T ss_pred Hh-----cCCCEEEECC
Confidence 65 5789999975
No 91
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=66.66 E-value=20 Score=31.95 Aligned_cols=104 Identities=17% Similarity=0.075 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-hHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCee
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~-~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (269)
++.+. +..+-+.|.++|+++|++-.++.|...+ ..+.++.+..+.+...++...++ .+...++.+++. +....
T Consensus 23 ~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~----g~~~v 96 (287)
T PRK05692 23 IPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA----GADEV 96 (287)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc----CCCEE
Confidence 44443 3455667889999999998666665322 23346666666655556666665 477777777553 33322
Q ss_pred EEcccCCcc------CCCcch-----hhHHHHHHHcCCeEEE
Q 024292 221 SNQVNYSLI------YRKPEE-----NGVKAACDELGITLIA 251 (269)
Q Consensus 221 ~~Q~~~s~~------~~~~~~-----~~l~~~~~~~gi~via 251 (269)
.+-+..|.. ....++ ...+++++++|+.+.+
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 222222211 111111 2588999999998863
No 92
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=66.34 E-value=59 Score=30.62 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEee-cCCC-----------CCh-H---HHHHHH-HHHHHcCCccEEEecCcCH
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGI-----------WGN-E---GFIDGL-GDAVEQGLVKAVGVSNYSE 202 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~lH-~p~~-----------~~~-~---~~~~~L-~~l~~~G~ir~iGvSn~~~ 202 (269)
..+.+.+.+.++..+ .|+.|+|.+|.+- -|.. .|. + +.++.. +.|.+.|. +.+|+|||.-
T Consensus 200 ~QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 200 GQTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 456666777777555 5779999999773 3322 111 1 344443 44566677 8999999965
No 93
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=66.28 E-value=99 Score=28.27 Aligned_cols=15 Identities=7% Similarity=-0.013 Sum_probs=12.7
Q ss_pred hHHHHHHHcCCeEEE
Q 024292 237 GVKAACDELGITLIA 251 (269)
Q Consensus 237 ~l~~~~~~~gi~via 251 (269)
.+++.+++++|.+-.
T Consensus 237 ~ll~~l~~~~I~lEv 251 (345)
T cd01321 237 LLMDLVKKKNIAIEV 251 (345)
T ss_pred HHHHHHHHcCCeEEE
Confidence 599999999998764
No 94
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=66.26 E-value=26 Score=28.63 Aligned_cols=64 Identities=23% Similarity=0.201 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCCc----cceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHH
Q 024292 147 VLAALKDSLFRLGLSS----VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 147 i~~~l~~sL~~L~~dy----iDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 211 (269)
.++.++..++++|.+. ++.+.-.+.......++.+.|++|++.| ++-.-+||.+...++..++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYLRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 3455666666776542 1111111111123568889999999988 55566888887777776543
No 95
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=66.25 E-value=18 Score=30.57 Aligned_cols=65 Identities=22% Similarity=0.192 Sum_probs=41.8
Q ss_pred HHHhCCCccceEEee-cCCCCChHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHHHHHHhcCCCeeEEcccC
Q 024292 155 LFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (269)
Q Consensus 155 L~~L~~dyiDl~~lH-~p~~~~~~~~~~~L~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~~~~~~Q~~~ 226 (269)
+..+|.||+=+.+.. .|...+.+.+-+....+ .+.++.+||. |-+++.+.++++. ..++++|++-
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHg 85 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVET-----VPLDLLQLHG 85 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHh-----cCCCEEEECC
Confidence 346899998886433 23223333333333322 3568999987 5688888888765 5789999975
No 96
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=65.99 E-value=36 Score=32.02 Aligned_cols=86 Identities=7% Similarity=-0.065 Sum_probs=59.1
Q ss_pred ceEEeecCCCC-ChHHHHHHHHHHHHc------CCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchh
Q 024292 164 ELYQLHWAGIW-GNEGFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEEN 236 (269)
Q Consensus 164 Dl~~lH~p~~~-~~~~~~~~L~~l~~~------G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~ 236 (269)
++ ++..|-+. +.++.++.|.+|++. ..--..+=|.++.+.+.++++. --.+++|+..+-+---.+..
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~-----~a~d~v~iK~~k~GGIt~a~ 338 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDA-----KAGHMVQIKTPDVGGVNNIA 338 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHh-----CCCCEEEeCccccCCHHHHH
Confidence 44 77776542 224567888888766 4444566677788888888764 34788888877544322333
Q ss_pred hHHHHHHHcCCeEEEcccc
Q 024292 237 GVKAACDELGITLIAYCPI 255 (269)
Q Consensus 237 ~l~~~~~~~gi~via~~pl 255 (269)
.+.++|+++||.++..+..
T Consensus 339 kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 339 RAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHHHHHcCCEEEEeCCC
Confidence 6999999999999997665
No 97
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=65.98 E-value=30 Score=27.35 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=45.2
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC-CChHHHHHHHHHHHHc
Q 024292 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI-WGNEGFIDGLGDAVEQ 189 (269)
Q Consensus 126 R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~--~dyiDl~~lH~p~~-~~~~~~~~~L~~l~~~ 189 (269)
|=-+.|+-|++ ....+..|++.+.++++.+. ....|++++..+.. .+..++.+.|.++.++
T Consensus 47 RlG~sVSKKvg---~AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 47 KVGITVSKKFG---KAHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred eEEEEEecccc---cchhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 67888999986 36778899999999998763 45689999998764 4456666666655544
No 98
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=65.43 E-value=88 Score=27.31 Aligned_cols=99 Identities=19% Similarity=0.209 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceE-EeecCCC--CChH-H---HHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHh
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELY-QLHWAGI--WGNE-G---FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~-~lH~p~~--~~~~-~---~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 214 (269)
.+++.+.+..++.+ .-|.|+||+- .--+|+. .+.+ | +...++.+++.-.+ -|.+-+++++.++++++.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~--- 94 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYRAEVARAALEA--- 94 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHc---
Confidence 45666666666554 5589999994 2223433 2223 3 55555666655223 378889999999999775
Q ss_pred cCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcc
Q 024292 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 215 ~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~ 253 (269)
|.+ -++-+. ... . + ++++.++++|..++.+-
T Consensus 95 -G~~-iINsis--~~~-~-~--~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 95 -GAD-IINDVS--GGQ-D-P--AMLEVAAEYGVPLVLMH 125 (257)
T ss_pred -CCC-EEEECC--CCC-C-c--hhHHHHHHcCCcEEEEe
Confidence 332 233222 221 1 1 48999999999999965
No 99
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=65.00 E-value=27 Score=29.47 Aligned_cols=77 Identities=29% Similarity=0.363 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEc
Q 024292 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (269)
Q Consensus 144 ~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q 223 (269)
...+.+.+++.++.+|.+ ++++ .+...+.+...+.++++.++| +..|=++..++..+...++.+...|+|+..+-
T Consensus 13 ~~~~~~g~~~~a~~~g~~-~~~~---~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d 87 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE-VEIV---FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVD 87 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE-EEEE---EESTTTHHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHHHHHHHcCCE-EEEe---CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEEe
Confidence 456888999999999974 3333 222356688889999999888 99999998877666677777777788766643
Q ss_pred cc
Q 024292 224 VN 225 (269)
Q Consensus 224 ~~ 225 (269)
..
T Consensus 88 ~~ 89 (257)
T PF13407_consen 88 SD 89 (257)
T ss_dssp ST
T ss_pred cc
Confidence 33
No 100
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=64.93 E-value=17 Score=32.16 Aligned_cols=93 Identities=22% Similarity=0.262 Sum_probs=60.2
Q ss_pred HHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecC---cCHHHHHHHHHHHHhcCCCeeEEcccCCccC
Q 024292 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn---~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~ 230 (269)
++++..-+..|+..+..|.-.. -.++.+ ++..- ..|=|+. +....+.+++++++..+++..++-+.||+.+
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~g-CpVi~s---l~~aD--~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~ 228 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGTG-CPVIAS---LKGAD--LAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGD 228 (284)
T ss_pred HHHHhhhhhcceeEEecCCCCC-ChHHHh---hccCC--EEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCc
Confidence 3334443447888888764211 122222 22222 3344443 3446677788888888899999888997655
Q ss_pred CCcchhhHHHHHHHcCCeEEEcccccC
Q 024292 231 RKPEENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~via~~pl~~ 257 (269)
. ++.++|++.|+.+++--|+..
T Consensus 229 s-----~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 229 S-----EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred h-----HHHHHHHHcCCCeeEECCcch
Confidence 4 389999999999998888753
No 101
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=64.82 E-value=93 Score=26.88 Aligned_cols=168 Identities=16% Similarity=0.167 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCC--CCCCC-C--CchHHHHHHHHhhcc---CCCCCC--cEEEEecCCCCCCCCCH
Q 024292 75 KAAKAAFDTSLDNGITFFDTAEVYGS--RASFG-A--INSETLLGRFIKERK---QRDPEV--EVTVATKFAALPWRLGR 144 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~--g~~~~-~--~~sE~~lG~al~~~~---~~~~R~--~v~I~tK~~~~~~~~~~ 144 (269)
+...+++++|++.|+..|=-+++... ..... . .-+..-+-+.++... .+. ++ +|.+.-=++ .-+
T Consensus 15 ~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y-~~~i~I~~GiE~~-----~~~ 88 (253)
T TIGR01856 15 DTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEY-ADKLKILIGLEVD-----YIP 88 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHh-hCCCeEEEEEEec-----ccc
Confidence 45678999999999998865555321 00000 0 000122222222211 000 12 333333332 112
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCC----C--------------ChH----HHHHHHHHHHHcC----CccEEEec
Q 024292 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI----W--------------GNE----GFIDGLGDAVEQG----LVKAVGVS 198 (269)
Q Consensus 145 ~~i~~~l~~sL~~L~~dyiDl~~lH~p~~----~--------------~~~----~~~~~L~~l~~~G----~ir~iGvS 198 (269)
.....+++.|++.+.||+ +.-+|+.+. . +.+ ...+.+.++.+.. .+.|+.+-
T Consensus 89 -~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~i~~~~~~dvlgH~Dli 166 (253)
T TIGR01856 89 -GFEDFTKDFLDEYGLDFV-IGSVHFLGGIPIDFDAEEFNEGLVSFYGNLEQAQRDYFESVYDSIQALFKPLVIGHIDLV 166 (253)
T ss_pred -chHHHHHHHHHHCCCCeE-EEEEEeecCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCcccHhHH
Confidence 233556777888888888 888897641 1 112 2233444555542 12233221
Q ss_pred ----C--------cC--HHHHHHHHHHHHhcCCCeeEEcccCC--ccCCCcchhhHHHHHHHcCCeEEE
Q 024292 199 ----N--------YS--EKRLRNAYEKLKKRGIPLASNQVNYS--LIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 199 ----n--------~~--~~~l~~~~~~~~~~~~~~~~~Q~~~s--~~~~~~~~~~l~~~~~~~gi~via 251 (269)
. +. .+.++++++.+.+.|..+.+|-..+. .-+.-+.. .+++.|++.|+.|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~g~~lEiNt~g~r~~~~~~yP~~-~il~~~~~~g~~itl 234 (253)
T TIGR01856 167 QKFGPLFTDVSSFSDEVYELLQRILKLVASQGKALEFNTSGLRKPLEEAYPSK-ELLNLAKELGIPLVL 234 (253)
T ss_pred HHhCccccccccccHHHHHHHHHHHHHHHHcCCEEEEEcHhhcCCCCCCCCCH-HHHHHHHHcCCCEEe
Confidence 1 00 13478888888888877777754332 22222322 599999999998653
No 102
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=64.63 E-value=35 Score=32.21 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhc---CCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 024292 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR---GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 181 ~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~---~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~p 254 (269)
+-...+-+.|-+..+|..+.+++++++.++.++.. +-||-+|-+ .++-++..+ .+++++|.++||.++..+.
T Consensus 29 eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e-~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 29 ELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELE-EGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhH-HHHHHHHHHcCCCEEEecc
Confidence 34445667899999999999999999999988773 446777654 333332222 3589999999998876653
No 103
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=64.42 E-value=66 Score=29.58 Aligned_cols=98 Identities=16% Similarity=0.086 Sum_probs=61.2
Q ss_pred CccceE-EeecCCC------------CChHHHHHHHHHHH-HcCC---ccEEEec--CcCHHHHHHHHHHHHhcCCCeeE
Q 024292 161 SSVELY-QLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 161 dyiDl~-~lH~p~~------------~~~~~~~~~L~~l~-~~G~---ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~ 221 (269)
.++||. -||.+++ ++.+++++++.+.. +.|+ ++++=+- |.+.+.++++.+.++.......+
T Consensus 207 ~~v~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~V 286 (348)
T PRK14467 207 PEVNLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKV 286 (348)
T ss_pred cCeeEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEE
Confidence 355654 5687765 23466777777665 3343 4444444 45688888888887643223567
Q ss_pred EcccCCccCCC----cchh---hHHHHHHHcCCeEEEcccccCC
Q 024292 222 NQVNYSLIYRK----PEEN---GVKAACDELGITLIAYCPIAQD 258 (269)
Q Consensus 222 ~Q~~~s~~~~~----~~~~---~l~~~~~~~gi~via~~pl~~G 258 (269)
+-++||++... +..+ .+.+..+++|+.+....+.+.-
T Consensus 287 nLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~d 330 (348)
T PRK14467 287 NLIPFNPDPELPYERPELERVYKFQKILWDNGISTFVRWSKGVD 330 (348)
T ss_pred EEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCcc
Confidence 77889886532 2211 3566677789999999877543
No 104
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=63.46 E-value=1.1e+02 Score=27.10 Aligned_cols=128 Identities=18% Similarity=0.211 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 024292 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~ 150 (269)
..+.++..++++.+.+.|+..|.- .| |+.--...-.+++.. +++.+ -.++.|+|-.- +...
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~---tG-GEPll~~~l~~iv~~-l~~~g----~~~v~i~TNG~----------ll~~ 99 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKI---TG-GEPLLRKDLIEIIRR-IKDYG----IKDVSMTTNGI----------LLEK 99 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEE---EC-cccccccCHHHHHHH-HHhCC----CceEEEEcCch----------HHHH
Confidence 356788888999988999988764 23 321101111233322 33322 13677877641 1122
Q ss_pred HHHHHHHhCCCccceEEeecCCC---------CChHHHHHHHHHHHHcCCc----cEEEecCcCHHHHHHHHHHHHhcCC
Q 024292 151 LKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGLV----KAVGVSNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 151 l~~sL~~L~~dyiDl~~lH~p~~---------~~~~~~~~~L~~l~~~G~i----r~iGvSn~~~~~l~~~~~~~~~~~~ 217 (269)
.-..|.+.|++.|- +-++.+++ ...+.+++.++.+++.|.. ..+.+.+.+.+++.++++.+...++
T Consensus 100 ~~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~ 178 (302)
T TIGR02668 100 LAKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGGA 178 (302)
T ss_pred HHHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 33446666766543 23444432 2367899999999999842 2444555788899999999887765
Q ss_pred C
Q 024292 218 P 218 (269)
Q Consensus 218 ~ 218 (269)
.
T Consensus 179 ~ 179 (302)
T TIGR02668 179 I 179 (302)
T ss_pred E
Confidence 4
No 105
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=63.33 E-value=81 Score=25.90 Aligned_cols=123 Identities=19% Similarity=0.238 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCC--CCchHHHHHHHHhhccCCCCCCcEEEEecCCC---CCCCCCHHHHHH
Q 024292 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFG--AINSETLLGRFIKERKQRDPEVEVTVATKFAA---LPWRLGRQSVLA 149 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~--~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~---~~~~~~~~~i~~ 149 (269)
+++..++-.++..|-..+ ..|||.|.. .+.+++++|++-++++.- .-+-|+|-... ...+++++.+
T Consensus 28 ~~aa~~i~~~l~~G~Kvl----~cGNGgSaadAqHfaael~gRf~~eR~~l---paIaLt~dsS~lTai~NDy~yd~v-- 98 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVL----ACGNGGSAADAQHFAAELTGRFEKERPSL---PAIALSTDSSVLTAIANDYGYDEV-- 98 (176)
T ss_pred HHHHHHHHHHHHcCCEEE----EECCCcchhhHHHHHHHHhhHHHhcCCCC---CeeEeecccHHHhhhhccccHHHH--
Confidence 456777888899999888 457876642 247889999998887632 45666655432 1235666654
Q ss_pred HHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHH
Q 024292 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (269)
Q Consensus 150 ~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~ 210 (269)
+.+..+.+|.. =|+++==.+.. ....++++++..++.|. .-||++.-+...+..+++
T Consensus 99 -FsRqveA~g~~-GDvLigISTSG-NS~nVl~Ai~~Ak~~gm-~vI~ltG~~GG~~~~~~D 155 (176)
T COG0279 99 -FSRQVEALGQP-GDVLIGISTSG-NSKNVLKAIEAAKEKGM-TVIALTGKDGGKLAGLLD 155 (176)
T ss_pred -HHHHHHhcCCC-CCEEEEEeCCC-CCHHHHHHHHHHHHcCC-EEEEEecCCCcccccccc
Confidence 34455577754 37776655532 35789999999999985 459999888777777643
No 106
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=63.19 E-value=68 Score=29.45 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=60.9
Q ss_pred EEeecCCC------------CChHHHHHHHHHHHHcC--C--ccEEEec--CcCHHHHHHHHHHHHhcCCCeeEEcccCC
Q 024292 166 YQLHWAGI------------WGNEGFIDGLGDAVEQG--L--VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (269)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~~L~~l~~~G--~--ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~s 227 (269)
+-+|.++. ++.+++++++.+..+.+ + ++++=+. |.+.+.++++.+.++.. +..++-++||
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l--~~~vnlIPyn 288 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDI--PSKVNLIPFN 288 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcc--CceEEEEecC
Confidence 55887764 23577888888777654 2 3344444 56779999998887644 4567778999
Q ss_pred ccCCC----cch---hhHHHHHHHcCCeEEEcccccC
Q 024292 228 LIYRK----PEE---NGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 228 ~~~~~----~~~---~~l~~~~~~~gi~via~~pl~~ 257 (269)
++... +.. ..+.+..+++||.+....+.+.
T Consensus 289 ~~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 289 EHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGS 325 (349)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 87532 111 1466778889999999987754
No 107
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=63.07 E-value=78 Score=30.03 Aligned_cols=30 Identities=27% Similarity=0.220 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeec
Q 024292 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHW 170 (269)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~ 170 (269)
...+.+.+++.++..+ .|+.|+|++|.+.-
T Consensus 225 PgqT~e~~~~~l~~~~-~l~~~~is~y~L~~ 254 (449)
T PRK09058 225 PGQTPEIWQQDLAIVR-DLGLDGVDLYALNL 254 (449)
T ss_pred CCCCHHHHHHHHHHHH-hcCCCEEEEecccc
Confidence 3578888888887655 58999999998763
No 108
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=62.93 E-value=15 Score=32.03 Aligned_cols=101 Identities=18% Similarity=0.268 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCC--CChHHHHHHHHHHHHcCCccEEEecCc----CHHHHHHHHHHHHhcCCCeeE
Q 024292 148 LAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNY----SEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 148 ~~~l~~sL~~L~~dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~G~ir~iGvSn~----~~~~l~~~~~~~~~~~~~~~~ 221 (269)
.+.+++.|+-.+ +|||++-+-|-.. ++.+-+-+.++-+++.|.--+.|=+-+ ....++++++.|+..| |++
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lG--f~~ 100 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELG--FDA 100 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT---SE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcC--CCE
Confidence 356777777777 7999999998655 344444444455555565555552211 1345667777777665 555
Q ss_pred EcccCCccCCCcch-hhHHHHHHHcCCeEEE
Q 024292 222 NQVNYSLIYRKPEE-NGVKAACDELGITLIA 251 (269)
Q Consensus 222 ~Q~~~s~~~~~~~~-~~l~~~~~~~gi~via 251 (269)
+.+.=.-++-..++ ..+++.+++.|..|+.
T Consensus 101 IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 101 IEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp EEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred EEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 55544444433322 2577777777777664
No 109
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=62.89 E-value=1.2e+02 Score=27.42 Aligned_cols=139 Identities=18% Similarity=0.077 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHC-CCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024292 73 KMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~-Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l 151 (269)
+.++..++++...+. ||+-+--+ -|.+- -.+...+-+.++..........+-|.|+.. -..+..+.+.+
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilS--GGDPl----~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~----v~~p~rit~el 189 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILT--GGDPL----VLSPRRLGDIMARLAAIDHVKIVRFHTRVP----VADPARVTPAL 189 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEe--CCCcc----cCCHHHHHHHHHHHHhCCCccEEEEeCCCc----ccChhhcCHHH
Confidence 456777777766544 78754211 02211 011233334444332110123466788762 22334444455
Q ss_pred HHHHHHhCCCccceEEeecCCC-CChHHHHHHHHHHHHcCCccEE------EecCcCHHHHHHHHHHHHhcCCCe-eEEc
Q 024292 152 KDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAV------GVSNYSEKRLRNAYEKLKKRGIPL-ASNQ 223 (269)
Q Consensus 152 ~~sL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L~~l~~~G~ir~i------GvSn~~~~~l~~~~~~~~~~~~~~-~~~Q 223 (269)
-+.|+..|.. ..+-+|...+ .-.++++++++.|++.|..-.+ |+ |.+.+.+.++.+.+.+.++.+ -+.|
T Consensus 190 l~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~l~~~gv~pyyl~~ 266 (321)
T TIGR03822 190 IAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRAFVECRIKPYYLHH 266 (321)
T ss_pred HHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHHHHhcCCeeEEEEe
Confidence 5566666732 3567776433 2257899999999999952211 43 678889999998888888643 3344
Q ss_pred c
Q 024292 224 V 224 (269)
Q Consensus 224 ~ 224 (269)
.
T Consensus 267 ~ 267 (321)
T TIGR03822 267 L 267 (321)
T ss_pred c
Confidence 3
No 110
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=62.86 E-value=95 Score=29.42 Aligned_cols=105 Identities=19% Similarity=0.169 Sum_probs=58.6
Q ss_pred HHHHHHHHhhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC------hHHHHHH
Q 024292 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (269)
Q Consensus 110 E~~lG~al~~~~~~~~R-~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~------~~~~~~~ 182 (269)
|+.|-++|++...+.++ +-++|.|=+.. ..--+.+..-+++.-++++ +.++.+|.|+... .....++
T Consensus 102 ~~~L~~aI~~~~~~~~p~~~I~V~~tC~~---~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~~~G~~~a~~a 175 (443)
T TIGR01862 102 EKKLKKLIHEAFTEFPLIKAISVYATCPT---GLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQSKGHHIANIA 175 (443)
T ss_pred HHHHHHHHHHHHHhCCccceEEEECCChH---HHhccCHHHHHHHHHHhcC---CCEEEEecCCccCCccchHHHHHHHH
Confidence 77788888876544333 55667766532 2223334444443333443 6899999887522 1222332
Q ss_pred -HHHHH--------HcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeE
Q 024292 183 -LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 183 -L~~l~--------~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 221 (269)
++++. +.++|--||-.++ +..++++.++++..|+++.+
T Consensus 176 l~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gl~v~~ 222 (443)
T TIGR01862 176 VINDKVGTREKEITTEYDVNIIGEYNI-GGDAWVMRIYLEEMGIQVVA 222 (443)
T ss_pred HHHHHhCCCCcccCCCCeEEEEccCcC-cccHHHHHHHHHHcCCeEEE
Confidence 33443 2466888886554 34455666666777776543
No 111
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=62.83 E-value=2.7 Score=38.68 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=35.2
Q ss_pred CCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCc-cCCCcchhhHHHHHHHcCCe
Q 024292 190 GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSL-IYRKPEENGVKAACDELGIT 248 (269)
Q Consensus 190 G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~-~~~~~~~~~l~~~~~~~gi~ 248 (269)
|+||++||--++.+.++++.+..+ .-++.+.+..+ +++... .+++.+++.||+
T Consensus 264 GriRYlGVlLYDaDrv~eaAs~~~----e~dly~~Q~~ifLDP~DP--~Vi~~A~k~Gip 317 (513)
T COG1140 264 GRIRYLGVLLYDADRVEEAASTEN----EKDLYERQLDVFLDPHDP--AVIEQARKDGIP 317 (513)
T ss_pred cceeeeeeeeecHHHHHHhhcCcc----HHHHHHHHHhhhcCCCCH--HHHHHHHHcCCc
Confidence 999999999999999999865421 12233333332 233222 588999998886
No 112
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=62.55 E-value=59 Score=29.91 Aligned_cols=90 Identities=10% Similarity=0.056 Sum_probs=61.5
Q ss_pred EEeecCCC------------CChHHHHHHHHHHHHcCC----ccEEEe--cCcCHHHHHHHHHHHHhcCCCeeEEcccCC
Q 024292 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGL----VKAVGV--SNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (269)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~~L~~l~~~G~----ir~iGv--Sn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s 227 (269)
+-||.+++ ++.++++++++++.+.+. |+++=+ -|.+.++++++.+.++.. +..++-++||
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l--~~~VnLIPyn 300 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGI--KCHVNLIPVN 300 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC--CCcEEEEecC
Confidence 56777764 345889999999977542 334433 356778999998887543 4677778898
Q ss_pred ccCCC----cch---hhHHHHHHHcCCeEEEcccccC
Q 024292 228 LIYRK----PEE---NGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 228 ~~~~~----~~~---~~l~~~~~~~gi~via~~pl~~ 257 (269)
++... +.. ..+.+.++++|+.+......+.
T Consensus 301 p~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~ 337 (356)
T PRK14455 301 PVPERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGT 337 (356)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCc
Confidence 87642 111 1466678899999998887654
No 113
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=62.33 E-value=91 Score=27.91 Aligned_cols=170 Identities=12% Similarity=0.061 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHH----HHHHHHhhcc-------CCCCCCcEEEEecCCCC----
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSET----LLGRFIKERK-------QRDPEVEVTVATKFAAL---- 138 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~----~lG~al~~~~-------~~~~R~~v~I~tK~~~~---- 138 (269)
++..+++-...+++|-+.++|+..-.+... .+|+ .+.+.++... ...-++...|+--+|+.
T Consensus 42 peiv~~vh~df~~aGa~ii~T~TYqa~~~~----~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~ 117 (300)
T COG2040 42 PEIVRNVHADFLRAGADIITTATYQATPEG----FAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAAL 117 (300)
T ss_pred HHHHHHHHHHHHHhcCcEEeehhhhcCHHH----HHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhc
Confidence 467777878889999999998743322111 1232 2222111110 00013444456666652
Q ss_pred ------CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CChHHHHHHHHHHHHcCCccEEEecCcC------HHHH
Q 024292 139 ------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYS------EKRL 205 (269)
Q Consensus 139 ------~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L~~l~~~G~ir~iGvSn~~------~~~l 205 (269)
.+..+.+.+.+-.+.-++.|.-.-+|++.+..... ...+.+++.+++. +|=-.|++|-.+ ...+
T Consensus 118 a~Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~---s~p~wISfT~~d~~~lr~Gt~l 194 (300)
T COG2040 118 ADEYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEF---SKPAWISFTLNDDTRLRDGTPL 194 (300)
T ss_pred ChhhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHHHHHHHHHHHHh---CCceEEEEEeCCCCccCCCccH
Confidence 12344566666667777788777799999987533 2234455555555 787888888652 3557
Q ss_pred HHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHH--HHcCCeEEEccc
Q 024292 206 RNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC--DELGITLIAYCP 254 (269)
Q Consensus 206 ~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~--~~~gi~via~~p 254 (269)
.++.++++... .+..+-+++.-.+.-. .+++.. ...++++++|--
T Consensus 195 ~eaa~~~~~~~-~iaa~gvNC~~p~~~~---a~i~~l~~~~~~~piivYPN 241 (300)
T COG2040 195 SEAAAILAGLP-NIAALGVNCCHPDHIP---AAIEELSKLLTGKPIIVYPN 241 (300)
T ss_pred HHHHHHHhcCc-chhheeeccCChhhhH---HHHHHHHhcCCCCceEEcCC
Confidence 77776654331 2344444443333222 255555 334888888864
No 114
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=62.20 E-value=1.3e+02 Score=27.66 Aligned_cols=91 Identities=16% Similarity=0.103 Sum_probs=62.1
Q ss_pred eEEeecCCC------------CChHHHHHHHHHHHHcC--Cc--cEEEec--CcCHHHHHHHHHHHHhcCCCeeEEcccC
Q 024292 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQG--LV--KAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (269)
Q Consensus 165 l~~lH~p~~------------~~~~~~~~~L~~l~~~G--~i--r~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~ 226 (269)
.+-||.|+. ++.+++++++.+..+.. +| -++=+. |.+.+++.++.++++ +.+..++-++|
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~--~~~~~VNLIp~ 287 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLR--GIDCRVNLIRF 287 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHc--CCCceEEEEec
Confidence 477898764 45688999998875543 22 123332 778899999988875 34578888999
Q ss_pred CccCCC----cch---hhHHHHHHHcCCeEEEcccccC
Q 024292 227 SLIYRK----PEE---NGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 227 s~~~~~----~~~---~~l~~~~~~~gi~via~~pl~~ 257 (269)
|+.... +.. ....+..+++||.+......+.
T Consensus 288 Np~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 288 HAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 975432 111 1466677889999999887654
No 115
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=62.18 E-value=1.2e+02 Score=27.43 Aligned_cols=153 Identities=13% Similarity=0.047 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 024292 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~s 154 (269)
++..+.+..+.+.|++.|=.-- +.... .+.+ +++++.- + ++-|.-=.. ..++.+... .
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d------~~~l-~~vr~~~---g--~~~l~lDaN---~~~~~~~a~-----~ 196 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWD------VEPL-KAVRERF---P--DIPLMADAN---SAYTLADIP-----L 196 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHH------HHHH-HHHHHHC---C--CCeEEEECC---CCCCHHHHH-----H
Confidence 5566777888899999874321 22111 3343 3444332 1 332322221 234444432 2
Q ss_pred HHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCC-ccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCc
Q 024292 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (269)
Q Consensus 155 L~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~ 233 (269)
+++| +..++.++..|-+ .+-++.+.+|++.-. =-+.|=|.++.+.+..+++. ..++++|+..+.+---.
T Consensus 197 ~~~l--~~~~i~~iEeP~~---~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~~~ik~~~~GGit 266 (354)
T cd03317 197 LKRL--DEYGLLMIEQPLA---ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIEL-----GACKIINIKPGRVGGLT 266 (354)
T ss_pred HHHh--hcCCccEEECCCC---hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHc-----CCCCEEEecccccCCHH
Confidence 3444 2346777777642 233667777776533 33667777888888888654 24688888776544222
Q ss_pred chhhHHHHHHHcCCeEEEcccccCCc
Q 024292 234 EENGVKAACDELGITLIAYCPIAQDS 259 (269)
Q Consensus 234 ~~~~l~~~~~~~gi~via~~pl~~G~ 259 (269)
+-..+..+|+.+|+.++..+....|+
T Consensus 267 ~~~~i~~~A~~~gi~~~~g~~~es~l 292 (354)
T cd03317 267 EALKIHDLCQEHGIPVWCGGMLESGI 292 (354)
T ss_pred HHHHHHHHHHHcCCcEEecCcccchH
Confidence 22258999999999998766554443
No 116
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=61.97 E-value=55 Score=28.51 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEe
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQL 168 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~l 168 (269)
.++.+...+ +-+.|.++|+|+|++-+.
T Consensus 18 ~~~~~~k~~-i~~~L~~~Gv~~iEvg~~ 44 (263)
T cd07943 18 QFTLEQVRA-IARALDAAGVPLIEVGHG 44 (263)
T ss_pred ecCHHHHHH-HHHHHHHcCCCEEEeecC
Confidence 344444433 333467777777777644
No 117
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=61.68 E-value=18 Score=32.58 Aligned_cols=164 Identities=15% Similarity=0.248 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHCCCC-eeecccccCCCCCCCCCchHHHHHHHHh---hccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 024292 75 KAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIK---ERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin-~~DTA~~Yg~g~~~~~~~sE~~lG~al~---~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~ 150 (269)
+...++++.|.+.|+. .||.=..+-. +.++--+.+ ..... +..++++--.-. .-+++.+.+.
T Consensus 92 ~~l~~i~~~A~~~~v~v~iDaE~~~~~---------~~~~~~~~~~~~~~~~~--~~~vg~tlQaYL---~~t~~~l~~l 157 (313)
T PF01619_consen 92 ERLRRICERAKEHGVFVLIDAEESWYQ---------DAILDLFLELMRKYNKG--WPNVGITLQAYL---KRTPDDLERL 157 (313)
T ss_dssp HHHHHHHHHHHHTTEEEEE----GGGH---------HHHHHHHHHHCCHHGTT----SEEEEEETTB---TTHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEcCCCccch---------HHHHHHHHHHhhHhhCC--CCeEEEEEechh---hchHHHHHHH
Confidence 4577888899999998 5676444443 444433333 22221 356666665421 2445666666
Q ss_pred HHHHHHHhCCCccceEEee---------------cCCC--CC----hHHHHHHHHHHHHcCC-c--cEEEecCcCHHHHH
Q 024292 151 LKDSLFRLGLSSVELYQLH---------------WAGI--WG----NEGFIDGLGDAVEQGL-V--KAVGVSNYSEKRLR 206 (269)
Q Consensus 151 l~~sL~~L~~dyiDl~~lH---------------~p~~--~~----~~~~~~~L~~l~~~G~-i--r~iGvSn~~~~~l~ 206 (269)
++.+-++ |. .+-+=++- ++++ ++ .+.....+.++..++. . -+++|.+|+...+.
T Consensus 158 ~~~a~~~-g~-~~~vRLVkGAY~e~E~~~a~~~g~~~~~~~~~k~~~d~~y~~~~~~l~~~~~~~~~~~~vATHn~~si~ 235 (313)
T PF01619_consen 158 LELARRR-GF-RLGVRLVKGAYLESERKRAQQHGYPDPPAFTDKATTDANYRRLARLLLEGGDAPKVYPMVATHNERSIA 235 (313)
T ss_dssp HHHHHHT-TS--EEEEEE--SSHHHHHHHHHHTTTSS-SB-SSHHHHHHHHHHHHHHHHCTTTT--EEEEEE---HHHHH
T ss_pred HHHHHHc-CC-eEEEEEecCCCCCchhHHHHHcCCCCCCCCCchhhhHHHHHHHHHHHhcccccceeeeeccCCCHHHHH
Confidence 6555432 21 12222221 1111 11 2334555555555544 3 68999999999999
Q ss_pred HHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccccc
Q 024292 207 NAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (269)
Q Consensus 207 ~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~ 256 (269)
.+.+.++..++++.--+++|-.+.--.+ ++-....+.|..+..|.|++
T Consensus 236 ~a~~l~~~~~~~~~~~~~efq~L~Gm~d--~l~~~L~~~g~~v~~YvP~G 283 (313)
T PF01619_consen 236 LALELAEELGIPPNDDRVEFQQLYGMAD--DLSRALAQAGYRVRKYVPYG 283 (313)
T ss_dssp HHHHHHHCTT-GG--GGEEEEEETTSSH--HHHHHHHHHTSEEEEEEEES
T ss_pred HHHHHHHHcCCCcccccEEeehhccCCH--HHHHHHHhCCCCEEEEEecC
Confidence 9999998887665333444444433222 48888889999999999997
No 118
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=61.46 E-value=1.7e+02 Score=29.08 Aligned_cols=97 Identities=9% Similarity=0.054 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCC----CCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCC-----CCCH
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFG----AINSETLLGRFIKERKQRDPEVEVTVATKFAALPW-----RLGR 144 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~----~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~-----~~~~ 144 (269)
++...++-+.++++|-+.|.|...+.+...-. ....|++...+++-...... .+++|+-=+|+... ..+.
T Consensus 42 Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lAr~a~~-~~~~VagsiGP~g~~~~~~~~~~ 120 (612)
T PRK08645 42 PELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLAREAAG-DDVYVAGTIGPIGGRGPLGDISL 120 (612)
T ss_pred HHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHHHHHhc-CCCeEEEeCCCCCCCCCCCCCCH
Confidence 46777777778899999999987665521100 01235555555552211111 34778888886432 1467
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecC
Q 024292 145 QSVLAALKDSLFRLGLSSVELYQLHWA 171 (269)
Q Consensus 145 ~~i~~~l~~sL~~L~~dyiDl~~lH~p 171 (269)
+.+.+...+..+.|--.-+|++++--.
T Consensus 121 ~~~~~~~~~~~~~l~~~gvD~l~~ET~ 147 (612)
T PRK08645 121 EEIRREFREQIDALLEEGVDGLLLETF 147 (612)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 888888888888885556899988743
No 119
>PLN00191 enolase
Probab=61.38 E-value=56 Score=31.23 Aligned_cols=97 Identities=11% Similarity=0.023 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEE-e-cCcCHHHHHHHHHHHHhcCCCee
Q 024292 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVG-V-SNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iG-v-Sn~~~~~l~~~~~~~~~~~~~~~ 220 (269)
+++.+.+-+.+.+ +..++.+|-.|-+ ++-|+.+.+|.+..++.-+| = ...+++.++++++. -..+
T Consensus 296 s~~e~i~~~~~L~-----~~y~I~~IEDPl~---~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~-----~aad 362 (457)
T PLN00191 296 SGDELIDLYKEFV-----SDYPIVSIEDPFD---QDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQE-----KACN 362 (457)
T ss_pred CHHHHHHHHHHHh-----hcCCcEEEECCCC---cccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHh-----CCCC
Confidence 4444444444333 3246778887743 34477888888888887777 1 22467888888765 2467
Q ss_pred EEcccCCccCCCcchhhHHHHHHHcCCeEEEc
Q 024292 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (269)
Q Consensus 221 ~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~ 252 (269)
++|+..|-+-.-.+..++.++|+++|+.++.-
T Consensus 363 ~i~iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 363 ALLLKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred EEEecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 77777765443333346899999999999773
No 120
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=61.26 E-value=53 Score=30.20 Aligned_cols=96 Identities=18% Similarity=0.075 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCCC----ChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEE
Q 024292 147 VLAALKDSLFRLGLSSVELYQLHWAGIW----GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 147 i~~~l~~sL~~L~~dyiDl~~lH~p~~~----~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~ 222 (269)
-+-.+-+.|.++|+++|++-..-.|... +.+++++.+.+ ...++...++ .+.+.++.+++. +.....+
T Consensus 69 ~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~----g~~~v~i 140 (347)
T PLN02746 69 VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAA----GAKEVAV 140 (347)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHc----CcCEEEE
Confidence 4456667799999999998755555332 23455555543 3335555664 477888888663 3322111
Q ss_pred cccCCc------cCCCcch-----hhHHHHHHHcCCeEE
Q 024292 223 QVNYSL------IYRKPEE-----NGVKAACDELGITLI 250 (269)
Q Consensus 223 Q~~~s~------~~~~~~~-----~~l~~~~~~~gi~vi 250 (269)
-+..|. ++...++ .+++++++++|+.+.
T Consensus 141 ~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 141 FASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 111221 1122222 158889999999885
No 121
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=60.95 E-value=1.2e+02 Score=26.88 Aligned_cols=135 Identities=9% Similarity=0.058 Sum_probs=68.2
Q ss_pred ChhhHHHHHHHHHHHHHCC-CCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCC-----------
Q 024292 70 DDRKMKAAKAAFDTSLDNG-ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA----------- 137 (269)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~G-in~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~----------- 137 (269)
+.+|.+...+.++..++.| ++-|=..-..|-+.+-...+-++++-.+.+.... |-.|++.+-...
T Consensus 16 g~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~---~~pvi~gv~~~~t~~~i~la~~a 92 (290)
T TIGR00683 16 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD---QIALIAQVGSVNLKEAVELGKYA 92 (290)
T ss_pred CCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHH
Confidence 3577888889999999999 8876433222221110011223444444444331 233444333211
Q ss_pred -----------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHH
Q 024292 138 -----------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (269)
Q Consensus 138 -----------~~--~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~ 204 (269)
.| ...+.+.+.+-+++..+. ++-+.+++-|.|......=..+.+.+|.+...|..|=-|+.+..+
T Consensus 93 ~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~--~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~pnv~giK~s~~d~~~ 170 (290)
T TIGR00683 93 TELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAE--TGGLNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYL 170 (290)
T ss_pred HHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhh--CCCCCEEEEeCccccccCcCHHHHHHHhcCCCEEEEEeCCCCHHH
Confidence 11 123445566666555543 334677777777543332234445555555555555555556565
Q ss_pred HHHHH
Q 024292 205 LRNAY 209 (269)
Q Consensus 205 l~~~~ 209 (269)
+.++.
T Consensus 171 ~~~~~ 175 (290)
T TIGR00683 171 LERLK 175 (290)
T ss_pred HHHHH
Confidence 55554
No 122
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=60.93 E-value=1.1e+02 Score=26.21 Aligned_cols=146 Identities=10% Similarity=0.040 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 024292 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~s 154 (269)
....+++..|.+.|+..|=.+++...... .+. ..+.+++ =+|+...-+. ...++.+.+-
T Consensus 16 ~~~~e~i~~A~~~Gl~~i~itdH~~~~~~-----~~~-~~~~~~~-------i~Il~GiEi~----~~~~~~~~~~---- 74 (237)
T PRK00912 16 DTVLRLISEASHLGYSGIALSNHSDKYPE-----SKP-ELEDLLG-------FEIFRGVEIV----ASNPSKLRGL---- 74 (237)
T ss_pred chHHHHHHHHHHCCCCEEEEecCcccccc-----hhH-HHHHhcC-------CcEEeeEEEe----cCCHHHHHHH----
Confidence 46778999999999998877666432100 011 1122211 1233222221 1233333333
Q ss_pred HHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCc---CHHHHHHHHHHHHhcCCCeeEEcccCCccCC
Q 024292 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (269)
Q Consensus 155 L~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~---~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~ 231 (269)
+++. .+.+|++.+| |. .+.+. ....+.+.|--||--.. ....-+++++.+...++.+.+ .++.+-.
T Consensus 75 ~~~~-~~~~d~v~v~-~~---~~~~~---~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEI---n~s~~~~ 143 (237)
T PRK00912 75 VGKF-RKKVDVLAVH-GG---DEKVN---RAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIEF---NLRDILK 143 (237)
T ss_pred HHhc-cCcccEEEEe-CC---CHHHH---HHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEEE---EchHhhh
Confidence 3332 2346888899 22 12222 35777888888875432 112233455556666654444 4443321
Q ss_pred Cc---------chhhHHHHHHHcCCeEEEc
Q 024292 232 KP---------EENGVKAACDELGITLIAY 252 (269)
Q Consensus 232 ~~---------~~~~l~~~~~~~gi~via~ 252 (269)
.. ....++..|++.|+.++.-
T Consensus 144 ~~~~~r~~~~~~~~~~~~~~~~~g~piiis 173 (237)
T PRK00912 144 SRGGRRARTLSNFRDNLALARKYDFPLVLT 173 (237)
T ss_pred hcccHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 11 0025999999999998743
No 123
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=60.21 E-value=47 Score=30.63 Aligned_cols=136 Identities=17% Similarity=0.205 Sum_probs=72.3
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-----CChHHHHHHHH
Q 024292 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-----WGNEGFIDGLG 184 (269)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~-----~~~~~~~~~L~ 184 (269)
|+.+-+++++...+...+-++|.|=+.+ ..--+.+..-+++.-++.+. .++.+|.+.. .+.+.++.+|-
T Consensus 59 ~~kL~~~i~~~~~~~~P~~i~v~~sC~~---~iIGdD~~~v~~~~~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l~ 132 (398)
T PF00148_consen 59 EEKLREAIKEIAEKYKPKAIFVVTSCVP---EIIGDDIEAVARELQEEYGI---PVIPVHTPGFSGSYSQGYDAALRALA 132 (398)
T ss_dssp HHHHHHHHHHHHHHHSTSEEEEEE-HHH---HHTTTTHHHHHHHHHHHHSS---EEEEEE--TTSSSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCcEEEEECCCCH---HHhCCCHHHHHHHhhcccCC---cEEEEECCCccCCccchHHHHHHHHH
Confidence 7777777776543221366777776532 11122233333333344443 8888888764 12445566555
Q ss_pred HHH-H------cCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEc--------------ccCCccCCCcchhhHHHHHH
Q 024292 185 DAV-E------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ--------------VNYSLIYRKPEENGVKAACD 243 (269)
Q Consensus 185 ~l~-~------~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q--------------~~~s~~~~~~~~~~l~~~~~ 243 (269)
+.. + ++.|--||.++..+..+.++.+..+..|+.+.++- ..+|+.-.......+.++.+
T Consensus 133 ~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~~~~a~~L~ 212 (398)
T PF00148_consen 133 EQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGGPYAAEWLE 212 (398)
T ss_dssp HHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHHHHHHHHHH
T ss_pred hhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchhhHHHHHHH
Confidence 444 2 26777889998876777777777777775433332 12344333222112455555
Q ss_pred H-cCCeEEE
Q 024292 244 E-LGITLIA 251 (269)
Q Consensus 244 ~-~gi~via 251 (269)
+ .|++++.
T Consensus 213 e~~giP~~~ 221 (398)
T PF00148_consen 213 ERFGIPYLY 221 (398)
T ss_dssp HHHT-EEEE
T ss_pred HHhCCCeee
Confidence 5 4999998
No 124
>PRK00077 eno enolase; Provisional
Probab=60.19 E-value=60 Score=30.64 Aligned_cols=99 Identities=17% Similarity=0.076 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcC--CccEEEec--CcCHHHHHHHHHHHHhcCCC
Q 024292 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGVS--NYSEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G--~ir~iGvS--n~~~~~l~~~~~~~~~~~~~ 218 (269)
+++...+.+.+.++. .+++++-.|-+ .+-|+.+.+|.+.- +|.-.|== ..+++.++++++. -.
T Consensus 262 s~~e~~~~~~~l~e~-----y~i~~iEdPl~---~~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~-----~a 328 (425)
T PRK00077 262 TSEEMIDYLAELVDK-----YPIVSIEDGLD---ENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEK-----GA 328 (425)
T ss_pred CHHHHHHHHHHHHhh-----CCcEEEEcCCC---CccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHh-----CC
Confidence 455555554544444 46778887743 22366667776663 45544422 2368888888764 34
Q ss_pred eeEEcccCCccCCCcchhhHHHHHHHcCCeEEE-ccc
Q 024292 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA-YCP 254 (269)
Q Consensus 219 ~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via-~~p 254 (269)
.+++|+..+-+-.-.+..++..+|+.+|+.++. ++.
T Consensus 329 ~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~s 365 (425)
T PRK00077 329 ANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRS 365 (425)
T ss_pred CCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCC
Confidence 677777776554333333689999999997654 544
No 125
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=60.08 E-value=1.3e+02 Score=27.11 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCc--cEEEecCcCHHHH
Q 024292 181 DGLGDAVEQGLV--KAVGVSNYSEKRL 205 (269)
Q Consensus 181 ~~L~~l~~~G~i--r~iGvSn~~~~~l 205 (269)
+.|+.|++.|.- -+||+=+++.+.+
T Consensus 118 e~L~~l~~aG~~~~v~iG~ES~~d~~L 144 (313)
T TIGR01210 118 EKLEELRKIGVNVEVAVGLETANDRIR 144 (313)
T ss_pred HHHHHHHHcCCCEEEEEecCcCCHHHH
Confidence 445556667762 5677766665554
No 126
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=59.51 E-value=79 Score=29.82 Aligned_cols=116 Identities=15% Similarity=0.145 Sum_probs=58.3
Q ss_pred ecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC-CccceEEeecC
Q 024292 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWA 171 (269)
Q Consensus 93 DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~-dyiDl~~lH~p 171 (269)
+..-.||. |+.|-++|++...+.+.+=++|.|=+-. ..--+.+..-+++.-++... ..+.++.++.|
T Consensus 62 E~d~V~Gg---------~~~L~~ai~~~~~~~~p~~I~v~ttC~~---~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tp 129 (435)
T cd01974 62 EDAAVFGG---------QNNLIDGLKNAYAVYKPDMIAVSTTCMA---EVIGDDLNAFIKNAKNKGSIPADFPVPFANTP 129 (435)
T ss_pred CCceEECc---------HHHHHHHHHHHHHhcCCCEEEEeCCchH---hhhhccHHHHHHHHHHhccCCCCCeEEEecCC
Confidence 34457776 7788888887654332455667666532 22223333333332222211 13788999888
Q ss_pred CCCC-----hHHHHHHHHH-HHH-------cCCccEEEecCcCHHHHHHHHHHHHhcCCCee
Q 024292 172 GIWG-----NEGFIDGLGD-AVE-------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 172 ~~~~-----~~~~~~~L~~-l~~-------~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (269)
.... .+.++++|-+ +.. .++|--||-.+...+.++++.++.+..|+.+.
T Consensus 130 gf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 130 SFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred CCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 6521 2334444432 222 23344554222222235666666667776654
No 127
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=59.38 E-value=88 Score=28.42 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=56.1
Q ss_pred HHHHHhCCCccceEEeec-CCC--CChHHHHHHHHHHHHcCCcc-EEEecCc---CHHHHHHHHHHHHhcCCCeeEEccc
Q 024292 153 DSLFRLGLSSVELYQLHW-AGI--WGNEGFIDGLGDAVEQGLVK-AVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVN 225 (269)
Q Consensus 153 ~sL~~L~~dyiDl~~lH~-p~~--~~~~~~~~~L~~l~~~G~ir-~iGvSn~---~~~~l~~~~~~~~~~~~~~~~~Q~~ 225 (269)
+.-+.+|.|+|||-+.-. |+. ...++....++...+.=.+- .|..|.. +++.++++++.++.. ++-++-..
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~--~pLInSat 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGE--RCLLGSAE 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCC--CCEEEECC
Confidence 344578998888765432 321 22444555555554432222 3666643 789999998876422 23333222
Q ss_pred CCccCCCcchhhHHHHHHHcCCeEEEcccc
Q 024292 226 YSLIYRKPEENGVKAACDELGITLIAYCPI 255 (269)
Q Consensus 226 ~s~~~~~~~~~~l~~~~~~~gi~via~~pl 255 (269)
.. + . +.+.++|+++|..+++.+|.
T Consensus 161 ~e----n-~-~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 161 ED----N-Y-KKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred HH----H-H-HHHHHHHHHhCCeEEEEcHH
Confidence 11 1 1 25999999999999998864
No 128
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=59.36 E-value=47 Score=31.63 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=11.6
Q ss_pred EEecCcCHHHHHHHHHHHHhcCC
Q 024292 195 VGVSNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 195 iGvSn~~~~~l~~~~~~~~~~~~ 217 (269)
+|.++++-+.+++.++.+..+|+
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gv 110 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGI 110 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCC
Confidence 34555554555555555544443
No 129
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=59.31 E-value=1.4e+02 Score=27.77 Aligned_cols=114 Identities=22% Similarity=0.193 Sum_probs=61.4
Q ss_pred eecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecC
Q 024292 92 FDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWA 171 (269)
Q Consensus 92 ~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p 171 (269)
-+..-.||. |+.|-++|++...+.+.+-++|.|=+.. ..--+.+..-+++.-++. -+.++.+|.|
T Consensus 62 ~E~d~VfGg---------~~~L~~~i~~~~~~~~P~~i~v~~tC~~---~~iGdDi~~v~~~~~~~~---~~~vi~v~t~ 126 (410)
T cd01968 62 SEKDVIFGG---------EKKLYKAILEIIERYHPKAVFVYSTCVV---ALIGDDIDAVCKTASEKF---GIPVIPVHSP 126 (410)
T ss_pred Cccceeecc---------HHHHHHHHHHHHHhCCCCEEEEECCCch---hhhccCHHHHHHHHHHhh---CCCEEEEECC
Confidence 344456776 7788888887654433456667776642 222223333333322233 3578899987
Q ss_pred CCCC-----hHHHHHHHHHHHH---------cCCccEEEecCcCHHHHHHHHHHHHhcCCCeeE
Q 024292 172 GIWG-----NEGFIDGLGDAVE---------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 172 ~~~~-----~~~~~~~L~~l~~---------~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 221 (269)
.... .+.++++|-+... ++.|--||-.++. ..+.++.++++..|+++.+
T Consensus 127 gf~g~~~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~-~d~~el~~lL~~~Gl~v~~ 189 (410)
T cd01968 127 GFVGNKNLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVA-GELWGVKPLLEKLGIRVLA 189 (410)
T ss_pred CcccChhHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCc-ccHHHHHHHHHHcCCeEEE
Confidence 6522 2334444443331 4567777754442 3345555556667766543
No 130
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=59.06 E-value=1.2e+02 Score=26.45 Aligned_cols=132 Identities=11% Similarity=0.088 Sum_probs=66.4
Q ss_pred ChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCC------------
Q 024292 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA------------ 137 (269)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~------------ 137 (269)
+.+|.+...+.++..++.|++-+-..-..|-+.+-...+=++++-.+.+... +++-|..-++.
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~-----~~~~vi~gv~~~~~~~~~~~a~~ 90 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVN-----GRVPVIAGTGSNNTAEAIELTKR 90 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhC-----CCCcEEeccCCccHHHHHHHHHH
Confidence 3577888999999999999987754322222111000012234444444332 33333333321
Q ss_pred ------------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHH
Q 024292 138 ------------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEK 203 (269)
Q Consensus 138 ------------~~--~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~ 203 (269)
.| +..+.+.+.+-+++..+..+ +.+++-|.|......=..+.+++|.+...|..|=.|+.+..
T Consensus 91 a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~---~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s~~~~~ 167 (284)
T cd00950 91 AEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATD---LPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEATGDLD 167 (284)
T ss_pred HHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCC---CCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEECCCCHH
Confidence 01 12345566666666666532 56666666643222222445555555566655555555555
Q ss_pred HHHHHH
Q 024292 204 RLRNAY 209 (269)
Q Consensus 204 ~l~~~~ 209 (269)
.+.++.
T Consensus 168 ~~~~~~ 173 (284)
T cd00950 168 RVSELI 173 (284)
T ss_pred HHHHHH
Confidence 555543
No 131
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=58.73 E-value=46 Score=31.15 Aligned_cols=102 Identities=11% Similarity=0.153 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcC-----------------H
Q 024292 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS-----------------E 202 (269)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~-----------------~ 202 (269)
.+.+.+.+.+.+++..+ |-||.+.+|.- -..+.++.++++|++ .|+-+-. -
T Consensus 135 ~~mt~d~~~~~ie~qa~----dGVDfmTiH~G------i~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~~~~ENPly 202 (423)
T TIGR00190 135 EDMDEDDMFRAIEKQAK----DGVDFMTIHAG------VLLEYVERLKRSGRI--TGIVSRGGAILAAWMLHHHKENPLY 202 (423)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccc------hhHHHHHHHHhCCCc--cCeecCcHHHHHHHHHHcCCcCchH
Confidence 35778888888887776 45899999974 357888899998844 4544321 2
Q ss_pred HHHHHHHHHHHhcCCCeeEEcccCC---ccCCCcc--------hhhHHHHHHHcCCeEEEccc
Q 024292 203 KRLRNAYEKLKKRGIPLASNQVNYS---LIYRKPE--------ENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~Q~~~s---~~~~~~~--------~~~l~~~~~~~gi~via~~p 254 (269)
++..++++++++..+.++.= --+. +.+-... ..+|.+.|+++||+++.=+|
T Consensus 203 e~fD~lLeI~~~yDVtlSLG-DglRPG~i~DA~D~aQi~El~~lgeL~~rA~e~gVQvMVEGP 264 (423)
T TIGR00190 203 KNFDYILEIAKEYDVTLSLG-DGLRPGCIADATDRAQISELITLGELVERAREADVQCMVEGP 264 (423)
T ss_pred HHHHHHHHHHHHhCeeeecc-CCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 67777888887665322210 0011 1111100 02688889999999998777
No 132
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=58.71 E-value=1e+02 Score=27.81 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=64.4
Q ss_pred HHHHhCCCccceEEeecCCC------CChHHHHHHHHHHHHcCCcc-EEEecCc---CHHHHHHHHHHHHhcCCCeeEEc
Q 024292 154 SLFRLGLSSVELYQLHWAGI------WGNEGFIDGLGDAVEQGLVK-AVGVSNY---SEKRLRNAYEKLKKRGIPLASNQ 223 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~~------~~~~~~~~~L~~l~~~G~ir-~iGvSn~---~~~~l~~~~~~~~~~~~~~~~~Q 223 (269)
..++.|. |++.+|-... .+..+..+.|+++.+.=+|- -||=|.. +++.++++.+.++-. ++-...
T Consensus 159 ~Vk~fga---dmvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGe--RclLaS 233 (403)
T COG2069 159 CVKKFGA---DMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGE--RCLLAS 233 (403)
T ss_pred HHHHhCC---ceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCc--eEEeec
Confidence 4456664 7788885432 56789999999998886664 5677765 688999998886532 222222
Q ss_pred ccCCccCCCcchhhHHHHHHHcCCeEEEcccccC
Q 024292 224 VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 224 ~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~ 257 (269)
...++ .-+ .+.+.+.++|=.|++|+++.-
T Consensus 234 anldl---Dy~--~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 234 ANLDL---DYE--RIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred ccccc---CHH--HHHHHHHhcCceEEEeeccCh
Confidence 22221 222 589999999999999998753
No 133
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=58.29 E-value=1.3e+02 Score=26.33 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEE-eecCCC--CChHH----HHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHh
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQ-LHWAGI--WGNEG----FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~-lH~p~~--~~~~~----~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 214 (269)
++.+.+.+..++.+ .-|.|+||+-. --+|+. .+.++ +...++.+++.-.+. |.+-+++++.++++++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~--- 95 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEA--- 95 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHh---
Confidence 45565555555444 55889999863 334543 23333 333456666653443 88889999999999875
Q ss_pred cCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 024292 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 215 ~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~p 254 (269)
| ..-+| ..+..... ..+++.++++|+.++.+-.
T Consensus 96 -G-~~iIN--disg~~~~---~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 96 -G-ADIIN--DVSGGSDD---PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred -C-CCEEE--eCCCCCCC---hHHHHHHHHcCCCEEEECC
Confidence 3 22232 22222211 2599999999999999643
No 134
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=58.24 E-value=1.6e+02 Score=27.31 Aligned_cols=105 Identities=22% Similarity=0.207 Sum_probs=58.0
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC------hHHHHHHH
Q 024292 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDGL 183 (269)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~------~~~~~~~L 183 (269)
|+.|-+++++...+.+.+=++|.|=+-. ..--+.+..-+++.-++.+ +.++.+|.|.... .+.++++|
T Consensus 72 ~~~L~~~i~~~~~~~~P~~i~v~~tC~~---~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~~G~~~a~~al 145 (406)
T cd01967 72 EKKLKKAIKEAYERFPPKAIFVYSTCPT---GLIGDDIEAVAKEASKELG---IPVIPVNCEGFRGVSQSLGHHIANDAI 145 (406)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCch---hhhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCcccHHHHHHHHHH
Confidence 7777888887653322344666666532 2222333333333333443 7899999885422 34455555
Q ss_pred HHHH---------HcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeE
Q 024292 184 GDAV---------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 184 ~~l~---------~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 221 (269)
-+.. +.+.|--||..++ +..+.++.++.+..|+.+..
T Consensus 146 ~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gi~~~~ 191 (406)
T cd01967 146 LDHLVGTKEPEEKTPYDVNIIGEYNI-GGDAWVIKPLLEELGIRVNA 191 (406)
T ss_pred HHHhcCCCCcCCCCCCeEEEEecccc-chhHHHHHHHHHHcCCEEEE
Confidence 5443 2345778887765 33455555556667765443
No 135
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=58.19 E-value=1.4e+02 Score=26.71 Aligned_cols=118 Identities=17% Similarity=0.132 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEee-cCCC---CChHHHHHHHHHHHHc--CCc-cEEEecCcCHHHHHHHHHHHHh
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLH-WAGI---WGNEGFIDGLGDAVEQ--GLV-KAVGVSNYSEKRLRNAYEKLKK 214 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH-~p~~---~~~~~~~~~L~~l~~~--G~i-r~iGvSn~~~~~l~~~~~~~~~ 214 (269)
.+.+.+++-++..++ -| +|=+++- .-.. ...+|-.+.++..++. |+| --.|++..+.+...++.+.+++
T Consensus 22 vD~~a~~~lv~~li~-~G---v~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~ 97 (299)
T COG0329 22 VDEEALRRLVEFLIA-AG---VDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEK 97 (299)
T ss_pred cCHHHHHHHHHHHHH-cC---CCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHh
Confidence 556666655554333 34 5544443 2222 4567777777777665 566 5678988888888888888888
Q ss_pred cCCC-eeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcc-cccCCcchhh
Q 024292 215 RGIP-LASNQVNYSLIYRKPEENGVKAACDELGITLIAYC-PIAQDSPIFA 263 (269)
Q Consensus 215 ~~~~-~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~-pl~~G~l~~~ 263 (269)
.|.. +.++-..|+...+..-..-....|..-+++++.|. |...|..+.-
T Consensus 98 ~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~ 148 (299)
T COG0329 98 LGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSP 148 (299)
T ss_pred cCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCH
Confidence 8865 44444455544422111124445666799999998 6666664443
No 136
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=58.11 E-value=1.6e+02 Score=28.62 Aligned_cols=140 Identities=11% Similarity=0.129 Sum_probs=68.3
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC-CccceEEeecCCCCC--hHHHHHHHHHH
Q 024292 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWAGIWG--NEGFIDGLGDA 186 (269)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~-dyiDl~~lH~p~~~~--~~~~~~~L~~l 186 (269)
|+.+-+.|++...+.+.+=++|.|=+. ++-|-+.++...+.++. .-++++.+|.|.... ....-.+++.+
T Consensus 70 ~~kL~~~I~~~~~~~~P~~I~V~tTC~-------~eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~g~~~~g~~~~l~~l 142 (513)
T CHL00076 70 QEKVVDNITRKDKEERPDLIVLTPTCT-------SSILQEDLQNFVDRASIESDSDVILADVNHYRVNELQAADRTLEQI 142 (513)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCc-------hhhhhcCHHHHHHHhhcccCCCEEEeCCCCCcccHHHHHHHHHHHH
Confidence 556666666554332234555555543 22233333333333321 136899999986522 11222223222
Q ss_pred H------------------HcCCccEEEecCc---CHHHHHHHHHHHHhcCCCeeEEcc--------------cCCccCC
Q 024292 187 V------------------EQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQV--------------NYSLIYR 231 (269)
Q Consensus 187 ~------------------~~G~ir~iGvSn~---~~~~l~~~~~~~~~~~~~~~~~Q~--------------~~s~~~~ 231 (269)
+ ..++|--||.++. ++..++++.++++..|+.+.++-. ..|+.--
T Consensus 143 v~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~~A~~NIvl~ 222 (513)
T CHL00076 143 VRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLPKAWFNIVPY 222 (513)
T ss_pred HHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCcEEEEec
Confidence 2 2356888887742 345566666666667765543321 2222221
Q ss_pred CcchhhHHHHHH-HcCCeEEEccccc
Q 024292 232 KPEENGVKAACD-ELGITLIAYCPIA 256 (269)
Q Consensus 232 ~~~~~~l~~~~~-~~gi~via~~pl~ 256 (269)
......+-++.+ +.|++++...|++
T Consensus 223 ~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 223 REVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred hhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 111112444444 4599888777764
No 137
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=57.50 E-value=1.2e+02 Score=26.19 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=52.1
Q ss_pred HHHHhCCCccceEEe--ecCCCCChHHHHHHHHHHHHcCCccEEEec--------Cc---CH-------HHHHHHHHHHH
Q 024292 154 SLFRLGLSSVELYQL--HWAGIWGNEGFIDGLGDAVEQGLVKAVGVS--------NY---SE-------KRLRNAYEKLK 213 (269)
Q Consensus 154 sL~~L~~dyiDl~~l--H~p~~~~~~~~~~~L~~l~~~G~ir~iGvS--------n~---~~-------~~l~~~~~~~~ 213 (269)
.++++|.++|+++.- |...+....+-++.|.++.++--++-++++ |+ +. +.+.+.++.+.
T Consensus 21 ~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~ 100 (275)
T PRK09856 21 DASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAK 100 (275)
T ss_pred HHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 557899999998631 211111112345556655544444444442 21 11 35666777888
Q ss_pred hcCCCeeEEcccCCccCCCcch---------hhHHHHHHHcCCeEEEcccc
Q 024292 214 KRGIPLASNQVNYSLIYRKPEE---------NGVKAACDELGITLIAYCPI 255 (269)
Q Consensus 214 ~~~~~~~~~Q~~~s~~~~~~~~---------~~l~~~~~~~gi~via~~pl 255 (269)
..|.+..++-.-..-.....++ ..+.++|+++||.+ ++-|+
T Consensus 101 ~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l-~iE~~ 150 (275)
T PRK09856 101 EMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDL-ILEPL 150 (275)
T ss_pred HhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEE-EEecC
Confidence 7776654442211111111111 25888999999866 44443
No 138
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=57.46 E-value=1.3e+02 Score=27.92 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=57.3
Q ss_pred EeecCCC------------CChHHHHHHHHHHHHcC-------CccEEEec--CcCHHHHHHHHHHHHhcCCCeeEEccc
Q 024292 167 QLHWAGI------------WGNEGFIDGLGDAVEQG-------LVKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVN 225 (269)
Q Consensus 167 ~lH~p~~------------~~~~~~~~~L~~l~~~G-------~ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~ 225 (269)
-||.+++ ++.+++++++.+..++- .||++=+. |.+.+.++++.+.++.. +..++-++
T Consensus 221 SLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l--~~~VnLIP 298 (372)
T PRK11194 221 SLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDT--PCKINLIP 298 (372)
T ss_pred eccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcC--CceEEEec
Confidence 3898775 23466776666655432 24555455 55789999998887643 45888899
Q ss_pred CCccCCC----cchh---hHHHHHHHcCCeEEEccccc
Q 024292 226 YSLIYRK----PEEN---GVKAACDELGITLIAYCPIA 256 (269)
Q Consensus 226 ~s~~~~~----~~~~---~l~~~~~~~gi~via~~pl~ 256 (269)
||++... +... .+.+..+++|+.+......+
T Consensus 299 YN~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G 336 (372)
T PRK11194 299 WNPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRG 336 (372)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 9986532 2221 35667778899998865554
No 139
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=57.24 E-value=1.5e+02 Score=28.71 Aligned_cols=105 Identities=15% Similarity=0.110 Sum_probs=58.4
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC--hHHHHHHHHHHH
Q 024292 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAV 187 (269)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~--~~~~~~~L~~l~ 187 (269)
|+.|-+++++...+.+.+-++|.|=+. .+-|-..++...+.++.+ ++++.++.|.... ..+.-.+|+.++
T Consensus 70 ~ekL~~aI~~~~~~~~P~~I~V~sTC~-------seiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~~~~~G~~~al~~lv 141 (519)
T PRK02910 70 AELLKDTLRRADERFQPDLIVVGPSCT-------AELLQEDLGGLAKHAGLP-IPVLPLELNAYRVKENWAADETFYQLV 141 (519)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcH-------HHHhccCHHHHHHHhCCC-CCEEEEecCCcccccchHHHHHHHHHH
Confidence 667777777664332123445555542 444555555555556553 6799999886511 122222222222
Q ss_pred ---------------HcCCccEEEecC---cCHHHHHHHHHHHHhcCCCeeEE
Q 024292 188 ---------------EQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 188 ---------------~~G~ir~iGvSn---~~~~~l~~~~~~~~~~~~~~~~~ 222 (269)
+.++|--||.++ +.+..+.++.++++..|+.+.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v 194 (519)
T PRK02910 142 RALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVV 194 (519)
T ss_pred HHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEE
Confidence 124577888764 24566777777777777665443
No 140
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=57.20 E-value=95 Score=29.17 Aligned_cols=109 Identities=9% Similarity=0.052 Sum_probs=60.8
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC-CCccceEEeecCCCCC-----hHHHHHHH
Q 024292 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGIWG-----NEGFIDGL 183 (269)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~-~dyiDl~~lH~p~~~~-----~~~~~~~L 183 (269)
|+.+-++|+....+.+.+-++|.|=+.. ..--+.+..-+++.-++.. ...+.++.+|.|+... .+.++++|
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~V~ttc~~---eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~~G~~~a~~al 142 (417)
T cd01966 66 GENLEEALDTLAERAKPKVIGLLSTGLT---ETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLEDGWAAAVEAI 142 (417)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcc---cccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHH
Confidence 7777788877653332456777777643 2222223333333222310 0136788999887532 22333333
Q ss_pred HH-H--------HHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeE
Q 024292 184 GD-A--------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 184 ~~-l--------~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 221 (269)
.+ + ++.++|--||-++.++..++++.++.+..|+.+.+
T Consensus 143 ~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 143 IEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred HHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 22 2 12456778876666677778888878888876644
No 141
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=56.66 E-value=1.4e+02 Score=27.40 Aligned_cols=101 Identities=21% Similarity=0.151 Sum_probs=63.4
Q ss_pred HHHHhCCCccceEEeecCCC------------CChHHHHHHHHHHHHc-CC---ccEEEec--CcCHHHHHHHHHHHHhc
Q 024292 154 SLFRLGLSSVELYQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKR 215 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~~------------~~~~~~~~~L~~l~~~-G~---ir~iGvS--n~~~~~l~~~~~~~~~~ 215 (269)
-|...+...+++ -||.+++ ++.+++++++.+...+ |+ |+++=+- |.+.+.++++.+.++..
T Consensus 207 ~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~ 285 (354)
T PRK14460 207 ELGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRT 285 (354)
T ss_pred HHHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344555544443 5777664 3467888888876443 32 2333222 66788899998887643
Q ss_pred CCCeeEEcccCCccCCCc----ch---hhHHHHHHHcCCeEEEcccccC
Q 024292 216 GIPLASNQVNYSLIYRKP----EE---NGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 216 ~~~~~~~Q~~~s~~~~~~----~~---~~l~~~~~~~gi~via~~pl~~ 257 (269)
+..++-++||++...+ .. ..+.+..+++|+.+......+.
T Consensus 286 --~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~ 332 (354)
T PRK14460 286 --KCKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQ 332 (354)
T ss_pred --CCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 4567778998864322 11 1366677888999998887654
No 142
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=56.39 E-value=89 Score=27.58 Aligned_cols=114 Identities=13% Similarity=0.090 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecC-CC---CChHHHHHHHHHHHH--cCCc-cEEEecCcCHHHHHHHHHHHH
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWA-GI---WGNEGFIDGLGDAVE--QGLV-KAVGVSNYSEKRLRNAYEKLK 213 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p-~~---~~~~~~~~~L~~l~~--~G~i-r~iGvSn~~~~~l~~~~~~~~ 213 (269)
..+.+.+++.++..++.+|++. +++-.- .. ...+|-.+.++..++ .|++ -..|++..+.+...++.+.++
T Consensus 17 ~iD~~~~~~~i~~l~~~~Gv~g---i~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~ 93 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGVDG---LYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAE 93 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCCCE---EEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHH
Confidence 4678888888888887667654 444332 11 445555555554444 3554 456898888888788878888
Q ss_pred hcCCCeeEEcccCCccCCCcchhhHHHH----HHHc-CCeEEEcc-cccCCcc
Q 024292 214 KRGIPLASNQVNYSLIYRKPEENGVKAA----CDEL-GITLIAYC-PIAQDSP 260 (269)
Q Consensus 214 ~~~~~~~~~Q~~~s~~~~~~~~~~l~~~----~~~~-gi~via~~-pl~~G~l 260 (269)
..|..-.++..+|..- .. +++++++ |+.- +++++.|. |...|..
T Consensus 94 ~~Gad~v~~~~P~y~~-~~--~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~ 143 (288)
T cd00954 94 ELGYDAISAITPFYYK-FS--FEEIKDYYREIIAAAASLPMIIYHIPALTGVN 143 (288)
T ss_pred HcCCCEEEEeCCCCCC-CC--HHHHHHHHHHHHHhcCCCCEEEEeCccccCCC
Confidence 8887655554454321 22 2245554 4556 89999995 4345543
No 143
>PRK12928 lipoyl synthase; Provisional
Probab=56.39 E-value=89 Score=27.86 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHHHcC---CccE---EEecCcCHHHHHHHHHHHHhcCCCeeEEcc-cCCc-------cCCC---cchh
Q 024292 174 WGNEGFIDGLGDAVEQG---LVKA---VGVSNYSEKRLRNAYEKLKKRGIPLASNQV-NYSL-------IYRK---PEEN 236 (269)
Q Consensus 174 ~~~~~~~~~L~~l~~~G---~ir~---iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~-~~s~-------~~~~---~~~~ 236 (269)
...++.++.++.+++.| .++. +|+ .=+.+++.+.++.++..+. +.+.+ +|.. +.+. .+..
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~--d~v~i~~Yl~p~~~~~~v~~~~~~~~f~ 261 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGC--DRLTIGQYLRPSLAHLPVQRYWTPEEFE 261 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCC--CEEEEEcCCCCCccCCceeeccCHHHHH
Confidence 34688999999999988 4443 466 5577888888887776654 33322 3321 1111 1113
Q ss_pred hHHHHHHHcCCeEEEcccccC
Q 024292 237 GVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 237 ~l~~~~~~~gi~via~~pl~~ 257 (269)
.+.+.+.+.|...++-+||-.
T Consensus 262 ~~~~~~~~~g~~~~~~~p~~r 282 (290)
T PRK12928 262 ALGQIARELGFSHVRSGPLVR 282 (290)
T ss_pred HHHHHHHHcCCceeEecCccc
Confidence 578888899999999999864
No 144
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=56.23 E-value=57 Score=31.16 Aligned_cols=63 Identities=17% Similarity=0.117 Sum_probs=42.1
Q ss_pred HHhCCCccceEEee-cCCCCChHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHHHHHHhcCCCeeEEcccCC
Q 024292 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (269)
Q Consensus 156 ~~L~~dyiDl~~lH-~p~~~~~~~~~~~L~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~~~~~~Q~~~s 227 (269)
..+|.||+=+.+.. .|...+.+.+-+....+. ++.+||- |-+++.+.++++. ..++++|++-+
T Consensus 274 ~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~-----~~lD~vQLHG~ 338 (454)
T PRK09427 274 YDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQ-----LSLAAVQLHGD 338 (454)
T ss_pred HhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHH-----cCCCEEEeCCC
Confidence 34899998886432 343344444433333332 8899987 6788888888765 57899999874
No 145
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=56.15 E-value=1.8e+02 Score=27.33 Aligned_cols=162 Identities=17% Similarity=0.231 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhc-cCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024292 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKER-KQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~-~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~ 153 (269)
.++.+.+..|++.|- .+.|+... +...|-+.+.+.+.+. +.....++|||++-+. +++|-
T Consensus 81 ~~a~~Av~~al~Sgk-----~N~Yaps~--G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~------------qAIe~ 141 (447)
T KOG0259|consen 81 QEAEQAVVDALRSGK-----GNGYAPSV--GILPARRAVAEYLNRDLPNKLTADDVVLTSGCS------------QAIEL 141 (447)
T ss_pred HHHHHHHHHHHhcCC-----CCCcCCcc--ccHHHHHHHHHHhhcCCCCccCcCceEEeccch------------HHHHH
Confidence 577888888888885 34566532 2224566666665433 2223579999998763 33444
Q ss_pred HHHHhCCCccceEEeecCCC----------------------CChHHHHHHHHHHHHcCCccEEEec-------CcCHHH
Q 024292 154 SLFRLGLSSVELYQLHWAGI----------------------WGNEGFIDGLGDAVEQGLVKAVGVS-------NYSEKR 204 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~~----------------------~~~~~~~~~L~~l~~~G~ir~iGvS-------n~~~~~ 204 (269)
.+..|--.--.++ +-+|.. .+.+-=++.++.|.++..+--+=+- -|+.++
T Consensus 142 ~i~~LA~p~aNIL-lPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~H 220 (447)
T KOG0259|consen 142 AISSLANPGANIL-LPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDH 220 (447)
T ss_pred HHHHhcCCCCcee-cCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHH
Confidence 3333322222222 222211 0112236678888888654433221 256789
Q ss_pred HHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHH-cCCeEEEcccccCCc
Q 024292 205 LRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDE-LGITLIAYCPIAQDS 259 (269)
Q Consensus 205 l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~-~gi~via~~pl~~G~ 259 (269)
++++++.|++.++++..-.+--+.+..... .++..+- .-++|+.-..+..|+
T Consensus 221 L~kiae~A~klgi~vIaDEVY~~~vfg~~p---fvpmg~fssiVPVitlggisKrW 273 (447)
T KOG0259|consen 221 LKKIAETAKKLGIMVIADEVYGHTVFGDKP---FVPMGKFSSIVPVITLGGISKRW 273 (447)
T ss_pred HHHHHHHHHHhCCeEEehhhcceeecCCCC---ccchhhccccCceEeeccccccc
Confidence 999999999888877766665555554432 3343332 356777766666665
No 146
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=55.72 E-value=1.4e+02 Score=25.95 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecc
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA 95 (269)
.+.++..++++...+.||..|+..
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 345888999999999999999987
No 147
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=55.43 E-value=81 Score=29.77 Aligned_cols=84 Identities=15% Similarity=0.035 Sum_probs=52.8
Q ss_pred cceEEeecCCCCChHHHHHHHHHHHHcC--CccEEEecC--cCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhH
Q 024292 163 VELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGVSN--YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGV 238 (269)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~L~~l~~~G--~ir~iGvSn--~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l 238 (269)
.++.++-.|-+ .+-|+.+.+|.+.- .+.-.|==+ .+++.++++++. -..+++|+..+-+-.-.+..++
T Consensus 278 ~~i~~iEdPl~---~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~-----~a~d~v~ik~~~iGGItea~~i 349 (425)
T TIGR01060 278 YPIVSIEDGLS---EEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEM-----GVANSILIKPNQIGTLTETLDA 349 (425)
T ss_pred CCcEEEEcCCC---cccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHh-----CCCCEEEecccccCCHHHHHHH
Confidence 46778887743 23367777776653 454434222 258888888664 3467788777655433333368
Q ss_pred HHHHHHcCCeEE-Eccc
Q 024292 239 KAACDELGITLI-AYCP 254 (269)
Q Consensus 239 ~~~~~~~gi~vi-a~~p 254 (269)
.+.|+.+|+.++ .+..
T Consensus 350 a~lA~~~Gi~~vv~h~s 366 (425)
T TIGR01060 350 VELAKKAGYTAVISHRS 366 (425)
T ss_pred HHHHHHcCCcEEEecCC
Confidence 999999999855 4543
No 148
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=55.21 E-value=1.6e+02 Score=26.54 Aligned_cols=93 Identities=13% Similarity=0.023 Sum_probs=47.4
Q ss_pred EEeecCCC--CChHHHHHHHHHHHHcCCccEEEecCc----CHH-HHHHHHHHHHhcCCCeeEEcccCC-ccCCCcchhh
Q 024292 166 YQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNY----SEK-RLRNAYEKLKKRGIPLASNQVNYS-LIYRKPEENG 237 (269)
Q Consensus 166 ~~lH~p~~--~~~~~~~~~L~~l~~~G~ir~iGvSn~----~~~-~l~~~~~~~~~~~~~~~~~Q~~~s-~~~~~~~~~~ 237 (269)
+.+=.-|+ .+...+.+.++.+++-+.++.|.+.+- ++. .-.++++.+++.+.. ..+.++.+ +-.-..+...
T Consensus 140 VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~h~~el~~~~~~ 218 (321)
T TIGR03822 140 VILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHANHARELTAEARA 218 (321)
T ss_pred EEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCCChhhcCHHHHH
Confidence 44444444 234677777788887777765555431 121 122333333333422 22333332 1010111124
Q ss_pred HHHHHHHcCCeEEEcccccCCc
Q 024292 238 VKAACDELGITLIAYCPIAQDS 259 (269)
Q Consensus 238 l~~~~~~~gi~via~~pl~~G~ 259 (269)
.++.+++.||.+...++|..|.
T Consensus 219 ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 219 ACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred HHHHHHHcCCEEEEEeeEeCCC
Confidence 6777778888888888887775
No 149
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=54.97 E-value=1.4e+02 Score=25.87 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEE-eecCCC--CC----hHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHh
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQ-LHWAGI--WG----NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~-lH~p~~--~~----~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 214 (269)
.+.+.+.+..++.+ .-|.|+||+-. --+|+. .+ .+.+...++.+++.-.+- |.+-+++++.++++++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~p-iSIDT~~~~v~~aaL~~--- 95 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVP-ISVDTFNAEVAEAALKA--- 95 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCe-EEEeCCcHHHHHHHHHh---
Confidence 45666666666554 56899999863 344543 11 234556666666653333 88999999999999876
Q ss_pred cCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccC
Q 024292 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 215 ~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~ 257 (269)
...-+|- .+..... .++++.++++|+.++.+..-..
T Consensus 96 --g~~iINd--is~~~~~---~~~~~l~~~~~~~vV~m~~~~~ 131 (258)
T cd00423 96 --GADIIND--VSGGRGD---PEMAPLAAEYGAPVVLMHMDGT 131 (258)
T ss_pred --CCCEEEe--CCCCCCC---hHHHHHHHHcCCCEEEECcCCC
Confidence 2222222 2222211 2589999999999998865443
No 150
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=54.97 E-value=74 Score=30.77 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCcc
Q 024292 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (269)
Q Consensus 145 ~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir 193 (269)
+...+.+++.+++||++ .|.+. ..-++.-.+.+.+.+++|+++|.|-
T Consensus 68 ~~~~~~~~~~l~~LgI~-~D~~~-~t~~~~~~~~v~~~~~~L~~kG~iY 114 (530)
T TIGR00398 68 DKYHEEFKDDWKWLNIS-FDRFI-RTTDEEHKEIVQKIFQKLKENGYIY 114 (530)
T ss_pred HHHHHHHHHHHHHhCCC-CCCCc-cCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 45668889999999997 57532 1112122456888999999999874
No 151
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=54.95 E-value=1.2e+02 Score=27.32 Aligned_cols=59 Identities=8% Similarity=0.131 Sum_probs=43.5
Q ss_pred EEEecCc---CHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCCc
Q 024292 194 AVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDS 259 (269)
Q Consensus 194 ~iGvSn~---~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G~ 259 (269)
.+++++- ++.+|.++.+.++..+++..+.+.+++. .-+-..+++.|+.++...||+.+.
T Consensus 227 ~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~-------~~~~~la~e~g~~v~~ldpl~~~~ 288 (311)
T PRK09545 227 HFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRP-------AVIESVAKGTSVRMGTLDPLGTNI 288 (311)
T ss_pred eeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCh-------HHHHHHHHhcCCeEEEeccccccc
Confidence 3444442 6789999999998888888887766653 125567788899998888988654
No 152
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=54.86 E-value=58 Score=30.61 Aligned_cols=102 Identities=12% Similarity=0.192 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcC-----------------H
Q 024292 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS-----------------E 202 (269)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~-----------------~ 202 (269)
.+.+.+.+.+.+++..+ |-||.+.+|.- -..+.++.++++|++ .|+-+-. -
T Consensus 138 ~~mt~d~~~~~ie~qa~----~GVDfmTiHcG------i~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~n~~ENPly 205 (431)
T PRK13352 138 VDMTEDDLFDVIEKQAK----DGVDFMTIHCG------VTRETLERLKKSGRI--MGIVSRGGSFLAAWMLHNNKENPLY 205 (431)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccc------hhHHHHHHHHhcCCc--cCeecCCHHHHHHHHHHcCCcCchH
Confidence 45778888888887776 45899999974 357788889988844 4544322 2
Q ss_pred HHHHHHHHHHHhcCCCeeEEcccCC---ccCCCcc--------hhhHHHHHHHcCCeEEEccc
Q 024292 203 KRLRNAYEKLKKRGIPLASNQVNYS---LIYRKPE--------ENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~Q~~~s---~~~~~~~--------~~~l~~~~~~~gi~via~~p 254 (269)
++..++++++++..+.++.= --+. +.+-... ..+|.+.|+++||+++.=+|
T Consensus 206 e~fD~lLeI~~~yDVtlSLG-DglRPG~i~Da~D~aQi~El~~lgeL~~RA~e~gVQvMVEGP 267 (431)
T PRK13352 206 EHFDYLLEILKEYDVTLSLG-DGLRPGCIADATDRAQIQELITLGELVKRAREAGVQVMVEGP 267 (431)
T ss_pred HHHHHHHHHHHHhCeeeecc-CCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 66777777777655322210 0001 1111000 02577788888888887665
No 153
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=54.83 E-value=64 Score=28.91 Aligned_cols=87 Identities=11% Similarity=0.025 Sum_probs=54.9
Q ss_pred cceEEeecCCCCChHHHHHHHHHHHHcCC-ccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHH
Q 024292 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (269)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~L~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~ 241 (269)
.++.++..|-+ .. +.+.+|.++-. --+.|=|-++.+.+.++++. ..++++|+.....---.+-..+.+.
T Consensus 183 ~~i~~iEqP~~--~~---~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~-----~~~d~i~ik~~~~GGi~~~~~i~~~ 252 (307)
T TIGR01927 183 GRIAFLEEPLP--DA---DEMSAFSEATGTAIALDESLWELPQLADEYGP-----GWRGALVIKPAIIGSPAKLRDLAQK 252 (307)
T ss_pred CCceEEeCCCC--CH---HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhc-----CCCceEEECchhcCCHHHHHHHHHH
Confidence 46667776642 22 56666665532 33555666677777777543 2367777776654322222358999
Q ss_pred HHHcCCeEEEcccccCCc
Q 024292 242 CDELGITLIAYCPIAQDS 259 (269)
Q Consensus 242 ~~~~gi~via~~pl~~G~ 259 (269)
|+.+|+.++..+.+..|+
T Consensus 253 a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 253 AHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHcCCCEEEECccchHH
Confidence 999999999987776665
No 154
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=54.61 E-value=61 Score=28.57 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=8.1
Q ss_pred HHHHHHhCCCccceE
Q 024292 152 KDSLFRLGLSSVELY 166 (269)
Q Consensus 152 ~~sL~~L~~dyiDl~ 166 (269)
-..|.++|+++|++-
T Consensus 27 a~~L~~~Gv~~iE~G 41 (275)
T cd07937 27 AEALDEAGFFSLEVW 41 (275)
T ss_pred HHHHHHcCCCEEEcc
Confidence 445555555555554
No 155
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=54.51 E-value=1.3e+02 Score=27.50 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=12.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceE
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELY 166 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~ 166 (269)
.++.+.+.+-+ +.|.+.|+|+|.+-
T Consensus 21 ~f~~~~~~~i~-~~L~~aGv~~IEvg 45 (337)
T PRK08195 21 QYTLEQVRAIA-RALDAAGVPVIEVT 45 (337)
T ss_pred ccCHHHHHHHH-HHHHHcCCCEEEee
Confidence 34444443333 33556666666653
No 156
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=54.35 E-value=42 Score=31.66 Aligned_cols=76 Identities=14% Similarity=0.226 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCC-ccEEEecCcCHHHHHHHHHHHHhcC--CCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 024292 178 GFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRG--IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 178 ~~~~~L~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~--~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~p 254 (269)
-+.+..+.|+++|. |+++.|.+-....++++.+..+... +.++.+..+-..+.+ -+ ++...|++.||.+.+=..
T Consensus 143 ~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~P--v~-EI~~icr~~~v~v~~DaA 219 (428)
T KOG1549|consen 143 CVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQP--VK-EIVKICREEGVQVHVDAA 219 (428)
T ss_pred chhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCcccccc--HH-HHHHHhCcCCcEEEeehh
Confidence 35566666777774 6777777554444444444332211 112333333222222 22 478888888886665444
Q ss_pred cc
Q 024292 255 IA 256 (269)
Q Consensus 255 l~ 256 (269)
-+
T Consensus 220 Qa 221 (428)
T KOG1549|consen 220 QA 221 (428)
T ss_pred hh
Confidence 33
No 157
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=54.21 E-value=1.2e+02 Score=27.94 Aligned_cols=90 Identities=19% Similarity=0.188 Sum_probs=61.8
Q ss_pred EEeecCCC------------CChHHHHHHHHHHHHcCCccEEEe-------cCcCHHHHHHHHHHHHhcCCCeeEEcccC
Q 024292 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGLVKAVGV-------SNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (269)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~~L~~l~~~G~ir~iGv-------Sn~~~~~l~~~~~~~~~~~~~~~~~Q~~~ 226 (269)
+-||.|+. ++.++.+++.+...+... +.|-+ -|-+.++.+++++.++ +++..++-++|
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~--~~~~~VNLIP~ 292 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLK--GIPCKVNLIPY 292 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhc--CCCceEEEeec
Confidence 56898874 457888888888776544 44433 2667888888877754 35669999999
Q ss_pred CccCCCcch----h---hHHHHHHHcCCeEEEcccccCC
Q 024292 227 SLIYRKPEE----N---GVKAACDELGITLIAYCPIAQD 258 (269)
Q Consensus 227 s~~~~~~~~----~---~l~~~~~~~gi~via~~pl~~G 258 (269)
|+..-...+ . ...+...+.||.+....+-+..
T Consensus 293 Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~D 331 (349)
T COG0820 293 NPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDD 331 (349)
T ss_pred CCCCCCCccCCcHHHHHHHHHHHHhCCeeEEeccccccc
Confidence 998754422 1 3555666678998888776443
No 158
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=54.14 E-value=81 Score=29.22 Aligned_cols=85 Identities=11% Similarity=0.001 Sum_probs=57.2
Q ss_pred eEEeecCCCCC-hHHHHHHHHHHHHc------CCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhh
Q 024292 165 LYQLHWAGIWG-NEGFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENG 237 (269)
Q Consensus 165 l~~lH~p~~~~-~~~~~~~L~~l~~~------G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~ 237 (269)
++++..|-+.. .++-++.+.+|.+. +.=-..|=|.++.+.+.++++. --.+++|+..+-.---.+-..
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~-----~a~div~~kl~k~GGIt~a~k 303 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADA-----GAAHMVQIKTPDLGGIDNTID 303 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHh-----CCCCEEEecchhcCCHHHHHH
Confidence 45777664311 12457778888766 4444666777788888888664 347888888775443222335
Q ss_pred HHHHHHHcCCeEEEccc
Q 024292 238 VKAACDELGITLIAYCP 254 (269)
Q Consensus 238 l~~~~~~~gi~via~~p 254 (269)
+.++|+.+||.++..+.
T Consensus 304 ia~lA~a~Gi~~~~h~~ 320 (369)
T cd03314 304 AVLYCKEHGVGAYLGGS 320 (369)
T ss_pred HHHHHHHcCCcEEEeCC
Confidence 89999999999998754
No 159
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=54.09 E-value=36 Score=31.75 Aligned_cols=70 Identities=11% Similarity=-0.030 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCC--cc-EEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcc
Q 024292 179 FIDGLGDAVEQGL--VK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 179 ~~~~L~~l~~~G~--ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~ 253 (269)
-++.+.+|++.-. |. .-|-+.++....+.+++. ..++++|+...-.---.+-..+.++|+.+|+.++.+.
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~-----~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH~ 319 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEM-----GCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPHG 319 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHc-----CCCCEEeCCccccCCHHHHHHHHHHHHHcCCeecccC
Confidence 4677777877644 22 336777788888888664 3578888887665422222358999999999988763
No 160
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=53.81 E-value=60 Score=28.95 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=59.3
Q ss_pred HHHhCCCccceEEeec-CCCCChHHH-----HHHHHHHHHcCCccEEEecCcCHHH----HHHHHHHHHhcCCCeeEEcc
Q 024292 155 LFRLGLSSVELYQLHW-AGIWGNEGF-----IDGLGDAVEQGLVKAVGVSNYSEKR----LRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 155 L~~L~~dyiDl~~lH~-p~~~~~~~~-----~~~L~~l~~~G~ir~iGvSn~~~~~----l~~~~~~~~~~~~~~~~~Q~ 224 (269)
++-++-.++|++.+.. .......+. -+.+.++.++--=|++|+.+.++.. .+++-+.... .-++++
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~----~gf~g~ 130 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRE----LGFVGV 130 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHh----cCceEE
Confidence 7778888999999884 111112222 2567788888788999999987653 2333332222 223333
Q ss_pred cCCccCCC----cch-hhHHHHHHHcCCeEEEccccc
Q 024292 225 NYSLIYRK----PEE-NGVKAACDELGITLIAYCPIA 256 (269)
Q Consensus 225 ~~s~~~~~----~~~-~~l~~~~~~~gi~via~~pl~ 256 (269)
..++..+. ..+ ..+++.|+++|+.|+.+....
T Consensus 131 ~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 131 KLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred EecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 33322221 111 359999999999999876553
No 161
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=53.73 E-value=1.1e+02 Score=24.32 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=39.9
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHH
Q 024292 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLR 206 (269)
Q Consensus 127 ~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~ 206 (269)
.--++..|+|.-.++...+. +.+.|+..|.|-+..=++- +++|+.++. -+..+--||+|..+..+..
T Consensus 12 rprvlvak~GlDgHd~gakv----ia~~l~d~GfeVi~~g~~~-----tp~e~v~aA----~~~dv~vIgvSsl~g~h~~ 78 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKV----IARALADAGFEVINLGLFQ-----TPEEAVRAA----VEEDVDVIGVSSLDGGHLT 78 (143)
T ss_pred CceEEEeccCccccccchHH----HHHHHHhCCceEEecCCcC-----CHHHHHHHH----HhcCCCEEEEEeccchHHH
Confidence 44466778875334444443 4455668887644332222 345555544 3457888999998765544
Q ss_pred HH
Q 024292 207 NA 208 (269)
Q Consensus 207 ~~ 208 (269)
.+
T Consensus 79 l~ 80 (143)
T COG2185 79 LV 80 (143)
T ss_pred HH
Confidence 43
No 162
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=53.35 E-value=52 Score=32.57 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=6.0
Q ss_pred HHHHhCCCccce
Q 024292 154 SLFRLGLSSVEL 165 (269)
Q Consensus 154 sL~~L~~dyiDl 165 (269)
.|.+.|++.|++
T Consensus 34 ~l~~~G~~~iE~ 45 (592)
T PRK09282 34 KLDKVGFWSLEV 45 (592)
T ss_pred HHHHcCCCEEEe
Confidence 344445555554
No 163
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=53.32 E-value=75 Score=27.47 Aligned_cols=36 Identities=8% Similarity=0.174 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHH
Q 024292 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL 212 (269)
Q Consensus 176 ~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~ 212 (269)
..++.+.|+.|+++|..-.| +||.+...+...++..
T Consensus 103 ~pg~~elL~~L~~~g~~l~I-~T~~~~~~~~~~l~~~ 138 (267)
T PRK13478 103 IPGVLEVIAALRARGIKIGS-TTGYTREMMDVVVPLA 138 (267)
T ss_pred CCCHHHHHHHHHHCCCEEEE-EcCCcHHHHHHHHHHH
Confidence 45778888899999865555 6666666666666543
No 164
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=53.23 E-value=1.8e+02 Score=26.52 Aligned_cols=152 Identities=13% Similarity=0.038 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~ 153 (269)
.++..+-+..+++.|++.|=.-- |.... ...+.+ +++++.-. +++-|.-=.. ..++.+...+-++
T Consensus 139 ~e~~~~~a~~~~~~Gf~~~Kikv--g~~~~----~d~~~v-~~vRe~~G----~~~~l~vDaN---~~~~~~~A~~~~~- 203 (352)
T cd03328 139 DDRLREQLSGWVAQGIPRVKMKI--GRDPR----RDPDRV-AAARRAIG----PDAELFVDAN---GAYSRKQALALAR- 203 (352)
T ss_pred HHHHHHHHHHHHHCCCCEEEeec--CCCHH----HHHHHH-HHHHHHcC----CCCeEEEECC---CCCCHHHHHHHHH-
Confidence 35555666777889999875421 21100 012333 33443221 2333332221 2345554333322
Q ss_pred HHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHc--CC-ccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccC
Q 024292 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~--G~-ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~ 230 (269)
.|+. +++.++..|- + .+-++.+.+|+++ -. =-+.|=|.++...+.++++. --++++|+...-.-
T Consensus 204 ~l~~-----~~~~~~EeP~--~-~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~-----~a~div~~d~~~~G 270 (352)
T cd03328 204 AFAD-----EGVTWFEEPV--S-SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEA-----HAVDVLQADVTRCG 270 (352)
T ss_pred HHHH-----hCcchhhCCC--C-hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHc-----CCCCEEecCccccC
Confidence 2333 4666666653 2 3347788888876 32 23566677788888888664 24788888877543
Q ss_pred CCcchhhHHHHHHHcCCeEEEcc
Q 024292 231 RKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~via~~ 253 (269)
--.+-..+.++|+.+|+.++.+.
T Consensus 271 Git~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 271 GVTGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred CHHHHHHHHHHHHHcCCeeccCc
Confidence 22222359999999999999875
No 165
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=53.18 E-value=1.2e+02 Score=27.84 Aligned_cols=91 Identities=14% Similarity=0.069 Sum_probs=59.4
Q ss_pred eEEeecCCC------------CChHHHHHHHHH-HHHcCC---ccEEEec--CcCHHHHHHHHHHHHhcCCCeeEEcccC
Q 024292 165 LYQLHWAGI------------WGNEGFIDGLGD-AVEQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (269)
Q Consensus 165 l~~lH~p~~------------~~~~~~~~~L~~-l~~~G~---ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~ 226 (269)
++-||.+++ ++.+++++++.+ +.+.|+ |+++=+. |.+.+.++++.+.++. .+..++-++|
T Consensus 211 aisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~LI~gvNDs~eda~~La~llk~--l~~~VnLiPy 288 (342)
T PRK14454 211 AISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFEYALVKGVNDSKEDAKELGKLLKG--MLCHVNLIPV 288 (342)
T ss_pred EEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEEEeECCCCCCHHHHHHHHHHHhc--CCceEEEEec
Confidence 566898875 234567777765 344453 4444444 4578889998888753 3456777899
Q ss_pred CccCCCc----ch---hhHHHHHHHcCCeEEEcccccC
Q 024292 227 SLIYRKP----EE---NGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 227 s~~~~~~----~~---~~l~~~~~~~gi~via~~pl~~ 257 (269)
|++.... .. ..+.+..+++|+.+......+.
T Consensus 289 n~~~~~~~~~ps~e~l~~f~~~l~~~gi~v~iR~~~G~ 326 (342)
T PRK14454 289 NEVKENGFKKSSKEKIKKFKNILKKNGIETTIRREMGS 326 (342)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 9865432 11 1466677788999998876643
No 166
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=53.00 E-value=70 Score=27.31 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHH
Q 024292 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL 212 (269)
Q Consensus 176 ~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~ 212 (269)
..++.+.|+.|++.|.--.| +||.+...++..++..
T Consensus 101 ~pg~~e~L~~L~~~g~~l~I-vT~~~~~~~~~~l~~~ 136 (253)
T TIGR01422 101 IPGVIEVIAYLRARGIKIGS-TTGYTREMMDVVAPEA 136 (253)
T ss_pred CCCHHHHHHHHHHCCCeEEE-ECCCcHHHHHHHHHHH
Confidence 45788889999999855555 7777777777776544
No 167
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=52.88 E-value=30 Score=33.75 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCC
Q 024292 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQD 258 (269)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G 258 (269)
..+++.++.+++.++|+.|.=+.|.. +...|-..+.++|+++|+.++.-..++.|
T Consensus 359 ~NL~RHIenvr~FGvPvVVAINKFd~-DTe~Ei~~I~~~c~e~Gv~va~~~~~~~G 413 (557)
T PRK13505 359 ANLERHIENIRKFGVPVVVAINKFVT-DTDAEIAALKELCEELGVEVALSEVWAKG 413 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCC-CCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 56788888888889887766555533 33333345889999999999855555443
No 168
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=52.80 E-value=11 Score=28.05 Aligned_cols=52 Identities=17% Similarity=0.113 Sum_probs=29.9
Q ss_pred cCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 024292 198 SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 198 Sn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~p 254 (269)
|.++...++++++. ..++++|+.....---.+-..+.++|+++|+.++..+.
T Consensus 3 ~~~~~~~~~~li~~-----~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEA-----GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHT-----TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHc-----CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 34566666666553 24567776654432111122477888888888888775
No 169
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=52.17 E-value=1.8e+02 Score=26.10 Aligned_cols=135 Identities=10% Similarity=0.064 Sum_probs=75.5
Q ss_pred ChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCC------------
Q 024292 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA------------ 137 (269)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~------------ 137 (269)
+.+|.+...+.++..++.|++-|=..-..|-..+-...+=++++-.+.+.... |-.|++.+-...
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g---rvpvi~Gv~~~~t~~ai~~a~~A~ 100 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAG---RVPVFVGATTLNTRDTIARTRALL 100 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCC---CCCEEEEeccCCHHHHHHHHHHHH
Confidence 35788899999999999999876443333321110111234555555555431 334444443211
Q ss_pred ----------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHH
Q 024292 138 ----------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (269)
Q Consensus 138 ----------~~--~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l 205 (269)
.| +..+.+.+.+-+++..+.. +-+.+++.|.|......=..+.+.+|.+-..|..|=-|+ +..++
T Consensus 101 ~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~--~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnivgiKdss-d~~~~ 177 (309)
T cd00952 101 DLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAV--PEMAIAIYANPEAFKFDFPRAAWAELAQIPQVVAAKYLG-DIGAL 177 (309)
T ss_pred HhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhC--CCCcEEEEcCchhcCCCCCHHHHHHHhcCCCEEEEEecC-ChHHH
Confidence 11 2345567777777666653 237888888886533222244555555556666666666 66666
Q ss_pred HHHHH
Q 024292 206 RNAYE 210 (269)
Q Consensus 206 ~~~~~ 210 (269)
.++++
T Consensus 178 ~~~i~ 182 (309)
T cd00952 178 LSDLA 182 (309)
T ss_pred HHHHH
Confidence 65544
No 170
>PLN02591 tryptophan synthase
Probab=51.76 E-value=1.6e+02 Score=25.62 Aligned_cols=127 Identities=12% Similarity=0.096 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCC---chHHHHH---------HHHhhccCCCCCCcEEEEecCCCCCC
Q 024292 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAI---NSETLLG---------RFIKERKQRDPEVEVTVATKFAALPW 140 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~---~sE~~lG---------~al~~~~~~~~R~~v~I~tK~~~~~~ 140 (269)
+.+...++++...+.|++.++-.--|.++.+++|. .+++.+. +.+++...+ ..-.+++.|=..+
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~-~~~p~ilm~Y~N~--- 89 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ-LSCPIVLFTYYNP--- 89 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecccH---
Confidence 45888999999999999999999888888887765 4444433 223332210 0112344333211
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCc-CHHHHHHHHHH
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEK 211 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~-~~~~l~~~~~~ 211 (269)
=..+=.+.+-+.++..| +|=+++.. .+.++.-+..+.+++.|.---.=++.. +.+++.++.+.
T Consensus 90 --i~~~G~~~F~~~~~~aG---v~GviipD---LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~ 153 (250)
T PLN02591 90 --ILKRGIDKFMATIKEAG---VHGLVVPD---LPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEA 153 (250)
T ss_pred --HHHhHHHHHHHHHHHcC---CCEEEeCC---CCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHh
Confidence 01111122223334445 45555553 466888888888888886555555443 45677777654
No 171
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=51.64 E-value=2e+02 Score=26.58 Aligned_cols=153 Identities=11% Similarity=0.094 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l 151 (269)
.+.++..++++.+.+.|++.|-- .| |+. .- ..-+-+.++.......-..+.|+|-.- . +.+.+
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~~---tG-GEP--ll--r~dl~eli~~l~~~~gi~~i~itTNG~-----l----L~~~~ 152 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIRL---TG-GEP--TL--RKDIEDICLQLSSLKGLKTLAMTTNGI-----T----LSRKL 152 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE---EC-CCC--cc--hhhHHHHHHHHHhcCCCceEEEeeCcc-----h----HHHHH
Confidence 56688889999888999987753 33 321 00 111223333221100013466776531 1 11222
Q ss_pred HHHHHHhCCCccceEEeecCCC---------CChHHHHHHHHHHHHcCCc--c--EEEecCcCHHHHHHHHHHHHhcCCC
Q 024292 152 KDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGLV--K--AVGVSNYSEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 152 ~~sL~~L~~dyiDl~~lH~p~~---------~~~~~~~~~L~~l~~~G~i--r--~iGvSn~~~~~l~~~~~~~~~~~~~ 218 (269)
..|...|++.|- +-|+..++ ...+.+++.++.+++.|+. + .+-+-.++.+++.++++.++..++
T Consensus 153 -~~L~~aGld~Vn-ISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi- 229 (373)
T PLN02951 153 -PRLKEAGLTSLN-ISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPI- 229 (373)
T ss_pred -HHHHhCCCCeEE-EeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCC-
Confidence 234455655433 22333322 1247899999999999852 2 233345788899999999887654
Q ss_pred eeEEcccCCccCCCcc-------hhhHHHHHHHc
Q 024292 219 LASNQVNYSLIYRKPE-------ENGVKAACDEL 245 (269)
Q Consensus 219 ~~~~Q~~~s~~~~~~~-------~~~l~~~~~~~ 245 (269)
.+.-++|.++..... ..++++..+++
T Consensus 230 -~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~ 262 (373)
T PLN02951 230 -NVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQR 262 (373)
T ss_pred -eEEEEEcccCCCCccccccCCCHHHHHHHHHHh
Confidence 444445555443210 12466666554
No 172
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=51.03 E-value=1.6e+02 Score=25.30 Aligned_cols=156 Identities=18% Similarity=0.221 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHCCCCeeecccccCC---CCCCCCCchHHHHHHHHh---hccCCCCCC-cEEEEecCCCCCCCCCHHHHH
Q 024292 76 AAKAAFDTSLDNGITFFDTAEVYGS---RASFGAINSETLLGRFIK---ERKQRDPEV-EVTVATKFAALPWRLGRQSVL 148 (269)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DTA~~Yg~---g~~~~~~~sE~~lG~al~---~~~~~~~R~-~v~I~tK~~~~~~~~~~~~i~ 148 (269)
...++++.|.+.|+..|=+.++... +.. ++.+-+..+ ..... .+ +|++-.=+... +....
T Consensus 17 ~~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~i~i~~G~E~~~~-----~~~~~ 83 (237)
T COG1387 17 TPEEMVEAAIELGLEYIAITDHAPFLRVGLD------AELLKYFIEEIRELKKE--YDIKILIGIEVDIL-----PDGSL 83 (237)
T ss_pred CHHHHHHHHHHcCCeEEEEeccccccccCCC------HHHHHHHHHHHHHHHHh--cCceEEEeEEEEec-----CCCCc
Confidence 3455689999999999988777665 333 444433333 22211 12 22222222111 11122
Q ss_pred HHHHHHHHHhCCCccceEEeecC--CCCChHHHHHHHHHHHHcCCccEEEecCc----------CHHHHHHHHHHHHhcC
Q 024292 149 AALKDSLFRLGLSSVELYQLHWA--GIWGNEGFIDGLGDAVEQGLVKAVGVSNY----------SEKRLRNAYEKLKKRG 216 (269)
Q Consensus 149 ~~l~~sL~~L~~dyiDl~~lH~p--~~~~~~~~~~~L~~l~~~G~ir~iGvSn~----------~~~~l~~~~~~~~~~~ 216 (269)
...+.-+.. +|+ =+.-+|.+ .........+.+..+...+.|.-||=-+. ....+++.++.+.+.+
T Consensus 84 d~~~~~~~~--lD~-vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 160 (237)
T COG1387 84 DFLDEILKE--LDY-VIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNG 160 (237)
T ss_pred ccchhhHhh--cCE-EEEEeccCCccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhC
Confidence 222333333 333 35677886 33567788999999999999888874433 2356777888888877
Q ss_pred CCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024292 217 IPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 217 ~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
..+..+-- +-...+. ..++..|++.|+.+.-
T Consensus 161 ~aleins~---~~~~~~~-~~~~~~~~e~G~~~~i 191 (237)
T COG1387 161 KALEINSR---PGRLDPN-SEILRLARELGVKLAI 191 (237)
T ss_pred cEEeecCC---cCccCch-HHHHHHHHHhCCeEEe
Confidence 55544432 1111121 2599999999888763
No 173
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=50.83 E-value=1.1e+02 Score=27.81 Aligned_cols=107 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCccce---------EEeecCCCCChHHHHHHHHHHHHcCCccEEEecCc-CHHHHHH
Q 024292 138 LPWRLGRQSVLAALKDSLFRLGLSSVEL---------YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRN 207 (269)
Q Consensus 138 ~~~~~~~~~i~~~l~~sL~~L~~dyiDl---------~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~-~~~~l~~ 207 (269)
..+.++.+.+.+-++. |.+.|+|+|.+ -+-+.+...+..+.++.+.+..+.-++..+-+... +.+.++.
T Consensus 17 ~~~~f~~~~~~~ia~~-Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 17 IRHQFTIEQVRAIAAA-LDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred CCCcCCHHHHHHHHHH-HHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHH
Q ss_pred HHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEc
Q 024292 208 AYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (269)
Q Consensus 208 ~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~ 252 (269)
+.+. .++.+.+-.+.-+-.... +.+++++++|..+...
T Consensus 96 a~~~------gvd~iri~~~~~e~d~~~-~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 96 AYDA------GARTVRVATHCTEADVSE-QHIGMARELGMDTVGF 133 (333)
T ss_pred HHHC------CCCEEEEEeccchHHHHH-HHHHHHHHcCCeEEEE
No 174
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=50.53 E-value=1.4e+02 Score=24.36 Aligned_cols=86 Identities=12% Similarity=-0.108 Sum_probs=51.9
Q ss_pred HHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcC
Q 024292 111 TLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG 190 (269)
Q Consensus 111 ~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G 190 (269)
+.+|+||++.... -+.|..++++ ..++-.+...+.++.+ ....+-+-.-.-+...+++.++++.+
T Consensus 35 ~~~a~~L~~~~~~--~D~VL~Spa~----------Ra~QTae~v~~~~~~~-~~~~~~~l~p~~d~~~~l~~l~~~~d-- 99 (163)
T COG2062 35 ELVAAWLAGQGVE--PDLVLVSPAV----------RARQTAEIVAEHLGEK-KVEVFEELLPNGDPGTVLDYLEALGD-- 99 (163)
T ss_pred HHHHHHHHhcCCC--CCEEEeChhH----------HHHHHHHHHHHhhCcc-cceeccccCCCCCHHHHHHHHHHhcc--
Confidence 5679999998754 2667777776 2344455555566632 11222111111345677777777776
Q ss_pred CccEEEecCcCHHHHHHHHHH
Q 024292 191 LVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 191 ~ir~iGvSn~~~~~l~~~~~~ 211 (269)
-+..+.+..|+|..-+-+...
T Consensus 100 ~v~~vllVgH~P~l~~l~~~L 120 (163)
T COG2062 100 GVGSVLLVGHNPLLEELALLL 120 (163)
T ss_pred cCceEEEECCCccHHHHHHHH
Confidence 688999999987554444433
No 175
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=50.35 E-value=2.2e+02 Score=26.59 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhcc-CCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024292 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERK-QRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~-~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~ 153 (269)
....+.++.+++.|+-- ..|++.+ + -+.+-.|.++.. ...+.+.++.+.- +...+..
T Consensus 41 p~i~~Al~~rvdhGvfG----Y~~~~~~-----~-~~ai~~w~~~r~~~~i~~e~i~~~p~------------VVpgi~~ 98 (388)
T COG1168 41 PEIIEALRERVDHGVFG----YPYGSDE-----L-YAAIAHWFKQRHQWEIKPEWIVFVPG------------VVPGISL 98 (388)
T ss_pred HHHHHHHHHHHhcCCCC----CCCCCHH-----H-HHHHHHHHHHhcCCCCCcceEEEcCc------------chHhHHH
Confidence 57888899999999721 1122210 0 133444444432 2222233333322 4455666
Q ss_pred HHHHhCCCccceEEeecCCCCCh--------------------HH---HHHHHHHHHHcCCccEEEecC--------cCH
Q 024292 154 SLFRLGLSSVELYQLHWAGIWGN--------------------EG---FIDGLGDAVEQGLVKAVGVSN--------YSE 202 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~~~~~--------------------~~---~~~~L~~l~~~G~ir~iGvSn--------~~~ 202 (269)
.++.| |+.=|=+.++.|-..|. .. =++.||+...++.++.+=+|| |+.
T Consensus 99 ~I~~~-T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~ 177 (388)
T COG1168 99 AIRAL-TKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTK 177 (388)
T ss_pred HHHHh-CcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccH
Confidence 66666 34557777877654221 11 278888888888888887776 556
Q ss_pred HHHHHHHHHHHhcCCCeeEEcccCCccC
Q 024292 203 KRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (269)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~Q~~~s~~~ 230 (269)
+.|+++.++|.++++.+.+-.+.--+..
T Consensus 178 eeL~~i~elc~kh~v~VISDEIHaDlv~ 205 (388)
T COG1168 178 EELRKIAELCLRHGVRVISDEIHADLVL 205 (388)
T ss_pred HHHHHHHHHHHHcCCEEEeecccccccc
Confidence 8899999999998877666665554443
No 176
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=50.34 E-value=1e+02 Score=30.81 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccE
Q 024292 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKA 194 (269)
Q Consensus 145 ~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~ 194 (269)
+.+.+.+.+.+++||+++ |.| ..--+....+.+.+.+.+|.+.|.|..
T Consensus 73 d~~~~~fk~~l~~lgI~~-D~f-~rTt~~~h~~~v~~~~~~L~~kG~IY~ 120 (648)
T PRK12267 73 DEISAGFKELWKKLDISY-DKF-IRTTDERHKKVVQKIFEKLYEQGDIYK 120 (648)
T ss_pred HHHHHHHHHHHHHcCCCC-CCC-eeCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 567788899999999974 743 222222234677888999999998874
No 177
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=50.34 E-value=1.6e+02 Score=26.51 Aligned_cols=117 Identities=9% Similarity=0.009 Sum_probs=65.6
Q ss_pred HHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 024292 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (269)
Q Consensus 78 ~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~ 157 (269)
.++...|...|+.|+-++..+-.-+ ..+.+.++++..+ -.++++---|+..|.++++.. ++.+...
T Consensus 165 kd~~~Ia~a~g~~YVA~~~~~~~~~------l~~~i~~A~~~~G-----ps~I~v~sPC~~~~~~~~~~~---~~~~klA 230 (299)
T PRK11865 165 KNMPLIMAAHGIPYVATASIGYPED------FMEKVKKAKEVEG-----PAYIQVLQPCPTGWGFPPEKT---IEIGRLA 230 (299)
T ss_pred CCHHHHHHHcCCCEEEEEeCCCHHH------HHHHHHHHHhCCC-----CEEEEEECCCCCCCCCCHHHH---HHHHHHH
Confidence 4455666778999999987764322 2455555554322 344444444555566666643 3334444
Q ss_pred hCCCccceEEeecCCC---CChHH-----HHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHH
Q 024292 158 LGLSSVELYQLHWAGI---WGNEG-----FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (269)
Q Consensus 158 L~~dyiDl~~lH~p~~---~~~~~-----~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~ 213 (269)
..+.|.-||-+..-.. ..+.. -...=+-|+.||+.+++ ++++++++.+.++
T Consensus 231 vetg~~plye~~~g~~~~~~~~~~ld~~~~~pv~~~l~~q~Rf~~L-----~~~~~~~~q~~v~ 289 (299)
T PRK11865 231 VETGYWPLFEIENGKFKITYEPLHLDRRTRKPIEEYLKVQGRFKHL-----TEEDIEILQKYID 289 (299)
T ss_pred HhcCceeEEEEECCeeccCCCcccccccCCCCHHHHHhhCcchhcC-----CHHHHHHHHHHHH
Confidence 4467777776653211 00000 11223456789999998 6777877776644
No 178
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=50.19 E-value=79 Score=24.62 Aligned_cols=60 Identities=15% Similarity=0.095 Sum_probs=45.1
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC----CccceEEeecCCC--CChHHHHHHHHHHHH
Q 024292 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL----SSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (269)
Q Consensus 126 R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~----dyiDl~~lH~p~~--~~~~~~~~~L~~l~~ 188 (269)
|=-+.|+-|+| ....+..+++.+.++++.+.. ...|++++-.+.. .+..++.+.|+.+.+
T Consensus 48 RvG~~VSKKvG---~AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 48 RVGFTVTKKNG---NAVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred EEEEEEecccC---cchHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 66788888986 367788999999999987753 4579999998864 445666666665554
No 179
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=50.02 E-value=98 Score=29.48 Aligned_cols=114 Identities=10% Similarity=0.083 Sum_probs=59.7
Q ss_pred ccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC
Q 024292 95 AEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW 174 (269)
Q Consensus 95 A~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~ 174 (269)
.-.||. |+.|-++|++...+.+.+-++|.|=+-..-.+-+-+.+.+.+++.... ..-+.++.++.|+..
T Consensus 71 d~VfGg---------~~~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p~--~~~~pvi~v~tpgF~ 139 (455)
T PRK14476 71 TTILGG---------DENVEEAILNICKKAKPKIIGLCTTGLTETRGDDVAGALKEIRARHPE--LADTPIVYVSTPDFK 139 (455)
T ss_pred ceEeCC---------HHHHHHHHHHHHHhhCCCEEEEeCcchHhhhhccHHHHHHHHHhhccc--cCCCeEEEecCCCCC
Confidence 356776 788888888764332235566666552211122222222222211111 113678889988752
Q ss_pred C--h---HHHHHHHHH-HH--------HcCCccEEEecCcCHHHHHHHHHHHHhcCCCe
Q 024292 175 G--N---EGFIDGLGD-AV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 175 ~--~---~~~~~~L~~-l~--------~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 219 (269)
. . +.++++|.+ +. +.++|--||-+++.+..++++.++.+..|+.+
T Consensus 140 g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v 198 (455)
T PRK14476 140 GALEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEP 198 (455)
T ss_pred CcHHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCce
Confidence 2 2 233333322 22 23567788766665556677777777777665
No 180
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=49.87 E-value=2.2e+02 Score=26.62 Aligned_cols=106 Identities=10% Similarity=0.093 Sum_probs=52.7
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC--hHHHHHHHHHHH
Q 024292 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAV 187 (269)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~--~~~~~~~L~~l~ 187 (269)
++.+-++|++...+.+.+-++|.|=+-. ..--+.+..-+++.-++++ +.++.+|.|.... ..+.-.+|+.+.
T Consensus 70 ~~kL~~~I~~~~~~~~p~~I~v~~tC~~---~iIGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~g~~~al~~l~ 143 (430)
T cd01981 70 QEKVVENITRKDKEEKPDLIVLTPTCTS---SILQEDLQNFVRAAGLSSK---SPVLPLDVNHYRVNELQAADETFEQLV 143 (430)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccH---HHHhhCHHHHHHHhhhccC---CCeEEecCCCccchHHHHHHHHHHHHH
Confidence 3445555555433222345566665421 2222223333332222332 5788899887521 222222333222
Q ss_pred -----------------HcCCccEEEecCcC---HHHHHHHHHHHHhcCCCeeE
Q 024292 188 -----------------EQGLVKAVGVSNYS---EKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 188 -----------------~~G~ir~iGvSn~~---~~~l~~~~~~~~~~~~~~~~ 221 (269)
++.+|--||.++.+ +..+.++.++.+..|+.+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~ 197 (430)
T cd01981 144 RFYAEKARPQGTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNV 197 (430)
T ss_pred HHHhccccccccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEE
Confidence 12457788877543 56666666667777776544
No 181
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=49.52 E-value=80 Score=24.30 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=46.0
Q ss_pred CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC---ccceEEeecCCC--CChHHHHHHHHHHHHc
Q 024292 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS---SVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (269)
Q Consensus 125 ~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d---yiDl~~lH~p~~--~~~~~~~~~L~~l~~~ 189 (269)
+|=-+.|+-|+|. ...+..+++-+.++.+.+..+ -.|++++-.+.. .+..++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~---AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGN---AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccc---hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 3678899999873 567888999999998887653 369999988764 4566777777666543
No 182
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=49.50 E-value=95 Score=30.84 Aligned_cols=67 Identities=18% Similarity=0.090 Sum_probs=44.3
Q ss_pred HHhCCCccceEEee-cCCCCChHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHHHHHHhcCCCeeEEcccCC
Q 024292 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (269)
Q Consensus 156 ~~L~~dyiDl~~lH-~p~~~~~~~~~~~L~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~~~~~~Q~~~s 227 (269)
..+|.|||=+.+.. .|...+.+.....+.+....-.++.+||- |-+++.+.++.+. ..++++|++-+
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-----~~ld~vQLHG~ 88 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-----NGIDFVQLHGA 88 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-----cCCCEEEECCC
Confidence 45899999887554 34334555523333333333357889986 7788888888765 57899999864
No 183
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=49.44 E-value=1.7e+02 Score=25.03 Aligned_cols=23 Identities=4% Similarity=0.082 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHCCCCeeecc
Q 024292 73 KMKAAKAAFDTSLDNGITFFDTA 95 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA 95 (269)
+.++..++++...+.|+..|+..
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg 39 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVG 39 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec
Confidence 45899999999999999999975
No 184
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=49.29 E-value=1.3e+02 Score=26.43 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 024292 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (269)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL 155 (269)
+...+.+.++++|..|+=|+.-|+.+-+ ..+.-+++-+.+++... .++ +.-|... .-.+.+....-++.--
T Consensus 148 ~i~~a~~~a~~aGADFVKTSTGf~~~gA--t~edv~lm~~~i~~~~~---~~~--vgIKAsG--GIrt~~~A~~~i~ag~ 218 (257)
T PRK05283 148 LIRKASEIAIKAGADFIKTSTGKVPVNA--TLEAARIMLEVIRDMGV---AKT--VGFKPAG--GVRTAEDAAQYLALAD 218 (257)
T ss_pred HHHHHHHHHHHhCCCEEEcCCCCCCCCC--CHHHHHHHHHHHHhccc---CCC--eeEEccC--CCCCHHHHHHHHHHHH
Confidence 4788899999999999999999975322 11223455555543321 122 3445432 2467888888899999
Q ss_pred HHhCCCccc
Q 024292 156 FRLGLSSVE 164 (269)
Q Consensus 156 ~~L~~dyiD 164 (269)
+.||.+|++
T Consensus 219 ~~lg~~~~~ 227 (257)
T PRK05283 219 EILGADWAD 227 (257)
T ss_pred HHhChhhcC
Confidence 999999887
No 185
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=49.27 E-value=21 Score=32.43 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=12.7
Q ss_pred hHHHHHHHcCCeEEE
Q 024292 237 GVKAACDELGITLIA 251 (269)
Q Consensus 237 ~l~~~~~~~gi~via 251 (269)
.+.+.|+++||.+-.
T Consensus 214 ~i~~~c~~rgI~lAS 228 (377)
T COG3454 214 AIAALCRERGIALAS 228 (377)
T ss_pred HHHHHHHHcCCceec
Confidence 599999999998754
No 186
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.14 E-value=2.1e+02 Score=26.19 Aligned_cols=90 Identities=9% Similarity=0.117 Sum_probs=60.4
Q ss_pred EEeecCCC------------CChHHHHHHHHHHHHc-CC---ccEEEec--CcCHHHHHHHHHHHHhcCCCeeEEcccCC
Q 024292 166 YQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (269)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~~L~~l~~~-G~---ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~s 227 (269)
+-||.|+. ++.+++++++.++.++ |+ ++++=+. |.+.+.++++.++++..+ ..++-++||
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~--~kVnLIPyN 293 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLD--CKINVIPLN 293 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCC--CcEEEEccC
Confidence 56788764 3468999999988754 32 2243343 567889999988887544 566777888
Q ss_pred ccCC---Ccch---hhHHHHHHHcCCeEEEcccccC
Q 024292 228 LIYR---KPEE---NGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 228 ~~~~---~~~~---~~l~~~~~~~gi~via~~pl~~ 257 (269)
+... .+.. ....+..+++||.+......+.
T Consensus 294 ~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 294 TEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 7331 1111 1466677888999999887754
No 187
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=49.13 E-value=1.6e+02 Score=24.75 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l 151 (269)
.+.+++.++++.+++.|++.|.-...-.+ +++.+.+..++++ .++.|..= .-.+.+.+..++
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~~--------~~~~i~~l~~~~~-----~~~~iGaG-----TV~~~~~~~~a~ 80 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSPD--------PFDSIAALVKALG-----DRALIGAG-----TVLSPEQVDRLA 80 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCcc--------HHHHHHHHHHHcC-----CCcEEeEE-----ecCCHHHHHHHH
Confidence 35689999999999999999987632222 2666655555543 34443322 234555555544
Q ss_pred HHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHH
Q 024292 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (269)
Q Consensus 152 ~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~ 210 (269)
+ .|.| ++|.|. ...++.+ ..+..|..-..| .+++.++.++.+
T Consensus 81 ~-----aGA~-----fivsp~--~~~~v~~---~~~~~~~~~~~G--~~t~~E~~~A~~ 122 (206)
T PRK09140 81 D-----AGGR-----LIVTPN--TDPEVIR---RAVALGMVVMPG--VATPTEAFAALR 122 (206)
T ss_pred H-----cCCC-----EEECCC--CCHHHHH---HHHHCCCcEEcc--cCCHHHHHHHHH
Confidence 3 4543 456663 2233333 344566544444 677777777655
No 188
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=48.97 E-value=75 Score=28.52 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCc
Q 024292 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV 192 (269)
Q Consensus 144 ~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~i 192 (269)
.+...+.+++.+++||++ .|.+.-.. +....+.+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~tt-~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRTT-SPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeCC-CHHHHHHHHHHHHHHHHCCCE
Confidence 345677889999999996 58643321 112345688899999999998
No 189
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=48.66 E-value=1.7e+02 Score=25.73 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=38.4
Q ss_pred HHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 024292 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (269)
Q Consensus 78 ~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~ 157 (269)
.+.++.|++.|=-.|=.+.+||+ =++.+.++.... ..+.+..+- .....+.+-+.+..++
T Consensus 110 ~e~l~~a~~~g~gvIl~t~H~Gn---------wE~~~~~l~~~~-----~~~~~i~~~------~~n~~~~~~~~~~R~~ 169 (295)
T PF03279_consen 110 EEHLEAALAEGRGVILLTGHFGN---------WELAGRALARRG-----PPVAVIYRP------QKNPYIDRLLNKLRER 169 (295)
T ss_pred HHHHHHHHhcCCCCEEeCcCcCh---------HHHHHHHHHhhC-----CceEEEecC------CccHhHHHHHHHHHHh
Confidence 34566666666666667777887 556777776654 344444442 2234455566666666
Q ss_pred hCCCcc
Q 024292 158 LGLSSV 163 (269)
Q Consensus 158 L~~dyi 163 (269)
.|.+.+
T Consensus 170 ~g~~~i 175 (295)
T PF03279_consen 170 FGIELI 175 (295)
T ss_pred cCCeEe
Confidence 665443
No 190
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=48.14 E-value=1.7e+02 Score=24.70 Aligned_cols=52 Identities=19% Similarity=0.132 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHh---CCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCc
Q 024292 145 QSVLAALKDSLFRL---GLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (269)
Q Consensus 145 ~~i~~~l~~sL~~L---~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~ 200 (269)
..+.+.+++.++++ |. .+++++.... .+.....+.++.+..+ ++..|=++..
T Consensus 15 ~~~~~~i~~~~~~~~~~g~-~~~l~i~~~~--~~~~~~~~~~~~~~~~-~vdgiIi~~~ 69 (272)
T cd06300 15 AQMLDEFKAQAKELKKAGL-ISEFIVTSAD--GDVAQQIADIRNLIAQ-GVDAIIINPA 69 (272)
T ss_pred HHHHHHHHHHHHhhhccCC-eeEEEEecCC--CCHHHHHHHHHHHHHc-CCCEEEEeCC
Confidence 34555555555555 42 1344443322 1233444555555554 4444444433
No 191
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=47.86 E-value=50 Score=28.71 Aligned_cols=88 Identities=9% Similarity=-0.058 Sum_probs=55.5
Q ss_pred cceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHH
Q 024292 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (269)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~ 242 (269)
.++.++..|-+ .+-++.+.++. .+.=-+.|=|-++...+.++++. ..++++|+..+...--.+-..+.+.|
T Consensus 153 ~~i~~iEqP~~---~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~-----~~~d~v~~k~~~~GGit~~~~i~~~a 223 (263)
T cd03320 153 GRIEYIEQPLP---PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAA-----GALGALVLKPALLGGPRALLELAEEA 223 (263)
T ss_pred cCCceEECCCC---hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhc-----CCCCEEEECchhcCCHHHHHHHHHHH
Confidence 46667776643 33466666666 44444666666676677766553 24788887766543222222589999
Q ss_pred HHcCCeEEEcccccCCc
Q 024292 243 DELGITLIAYCPIAQDS 259 (269)
Q Consensus 243 ~~~gi~via~~pl~~G~ 259 (269)
+.+|+.++..+-+..++
T Consensus 224 ~~~gi~~~~~~~~es~i 240 (263)
T cd03320 224 RARGIPAVVSSALESSI 240 (263)
T ss_pred HHcCCCEEEEcchhhHH
Confidence 99999998876555444
No 192
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=47.73 E-value=1.1e+02 Score=27.75 Aligned_cols=83 Identities=7% Similarity=0.001 Sum_probs=49.7
Q ss_pred ceEEeecCCCCChHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHH
Q 024292 164 ELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (269)
Q Consensus 164 Dl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~ 242 (269)
++.++..|-. .++.|.+|++.-.|. +.|=|-++.+.+.++++. ...+++|+..+.+---. ++++.|
T Consensus 162 ~l~~iEqP~~-----~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~-----~a~dvi~ik~~~~GGit---~~lkiA 228 (327)
T PRK02901 162 PLEYVEQPCA-----TVEELAELRRRVGVPIAADESIRRAEDPLRVARA-----GAADVAVLKVAPLGGVR---AALDIA 228 (327)
T ss_pred CceEEecCCC-----CHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEEeCcchhCCHH---HHHHHH
Confidence 4555555532 155666665553332 444445566666666443 24677777766544321 478899
Q ss_pred HHcCCeEEEcccccCCc
Q 024292 243 DELGITLIAYCPIAQDS 259 (269)
Q Consensus 243 ~~~gi~via~~pl~~G~ 259 (269)
+++||.++..+.+..++
T Consensus 229 ~~~gi~v~v~s~~es~i 245 (327)
T PRK02901 229 EQIGLPVVVSSALDTSV 245 (327)
T ss_pred HHcCCcEEEeCCcccHH
Confidence 99999999887776554
No 193
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=47.70 E-value=1.4e+02 Score=27.69 Aligned_cols=81 Identities=14% Similarity=0.073 Sum_probs=55.5
Q ss_pred ChHHHHHHHHH-HHHcC---CccEEEec--CcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcch-------hhHHHH
Q 024292 175 GNEGFIDGLGD-AVEQG---LVKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKAA 241 (269)
Q Consensus 175 ~~~~~~~~L~~-l~~~G---~ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~-------~~l~~~ 241 (269)
+.+++++++.+ +.+.| +|+++=+. |.+.+.++++.++++.. ++.++-++||++...+.. ..+.+.
T Consensus 260 ~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~--~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~ 337 (368)
T PRK14456 260 PLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRF--FCKINLIDYNSIVNIKFEPVCSSTRERFRDR 337 (368)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcC--CCeeEEeeeccCCCCCCCCCCHHHHHHHHHH
Confidence 45788888876 44555 23344444 56777888888887643 457777889887654322 247777
Q ss_pred HHHcCCeEEEcccccC
Q 024292 242 CDELGITLIAYCPIAQ 257 (269)
Q Consensus 242 ~~~~gi~via~~pl~~ 257 (269)
.+++|+.+......+.
T Consensus 338 L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 338 LLDAGLQVTVRKSYGT 353 (368)
T ss_pred HHHCCCcEEeeCCCCc
Confidence 8889999999887754
No 194
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=47.66 E-value=65 Score=31.02 Aligned_cols=90 Identities=9% Similarity=0.025 Sum_probs=61.2
Q ss_pred CCcEEEEecCCCCCCCCCHHH--HHH--------HHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEE
Q 024292 126 EVEVTVATKFAALPWRLGRQS--VLA--------ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAV 195 (269)
Q Consensus 126 R~~v~I~tK~~~~~~~~~~~~--i~~--------~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~i 195 (269)
+.++||+.-+|.... -.|.. +.. .-...-+|+.+.|+|.+. .+.++.++..++.+++|+..+|
T Consensus 157 ~G~~~lTaGLGGMgG-AQPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~------~~ldeal~~~~~a~~~~~~~SI 229 (545)
T TIGR01228 157 KGKWVLTAGLGGMGG-AQPLAVTMNGGVSIAVEVDESRIDKRLETKYCDEQT------DSLDEALARAEEAKAEGKPISI 229 (545)
T ss_pred ceeEEEEeCCCcccc-ccHHHHHHcCceEEEEEECHHHHHHHHhcCcceeEc------CCHHHHHHHHHHHHHcCCceEE
Confidence 689999999986321 11110 000 012334688899999542 3578999999999999999999
Q ss_pred EecCcCHHHHHHHHHHHHhcCCCeeE--EcccC
Q 024292 196 GVSNYSEKRLRNAYEKLKKRGIPLAS--NQVNY 226 (269)
Q Consensus 196 GvSn~~~~~l~~~~~~~~~~~~~~~~--~Q~~~ 226 (269)
|+-..-.+.++++++. ++.|++ -|...
T Consensus 230 g~~GNaadv~~~l~~r----~i~pDlvtDQTSa 258 (545)
T TIGR01228 230 GLLGNAAEVLPELLKR----GVVPDVVTDQTSA 258 (545)
T ss_pred EeeccHHHHHHHHHHc----CCCCCCcCCCCcc
Confidence 9998777777777553 555554 46655
No 195
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=47.47 E-value=1.8e+02 Score=24.72 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCC-HHHHHHH
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLG-RQSVLAA 150 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~-~~~i~~~ 150 (269)
.+.++..++++.|.+.|+.-+-..+.| -....+.|+. .++-|+|=++. |.+.. .+.-...
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~-----------v~~a~~~l~~-------~~v~v~tVigF-P~G~~~~~~K~~E 75 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSY-----------VPLAKELLKG-------TEVRICTVVGF-PLGASTTDVKLYE 75 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHH-----------HHHHHHHcCC-------CCCeEEEEeCC-CCCCCcHHHHHHH
Confidence 356899999999999988777665554 3344555542 35677777764 34433 3333344
Q ss_pred HHHHHHHhCCCccceEEeecC-CCCChHHHHHHHHHHHHc--CC-ccEE-EecCcCHHHHHHHHHHHHhcCCCeeEEccc
Q 024292 151 LKDSLFRLGLSSVELYQLHWA-GIWGNEGFIDGLGDAVEQ--GL-VKAV-GVSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (269)
Q Consensus 151 l~~sL~~L~~dyiDl~~lH~p-~~~~~~~~~~~L~~l~~~--G~-ir~i-GvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~ 225 (269)
+++.+ ++|.|-||+++--.. ..-..+.+.+.+.+.++. |+ ++-| -.+-.+.+++.++.+++...|. +++...
T Consensus 76 ~~~Av-~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGA--DfvKTs 152 (211)
T TIGR00126 76 TKEAI-KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGA--DFVKTS 152 (211)
T ss_pred HHHHH-HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCC--CEEEeC
Confidence 44444 479999999876532 113456677777777764 54 2322 2222466888899888877764 555555
Q ss_pred --CCccCCCcchhhHHHHHHHcCCeEEE
Q 024292 226 --YSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 226 --~s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
|.+-.-..+.-.++...-...++|-+
T Consensus 153 TGf~~~gat~~dv~~m~~~v~~~v~IKa 180 (211)
T TIGR00126 153 TGFGAGGATVEDVRLMRNTVGDTIGVKA 180 (211)
T ss_pred CCCCCCCCCHHHHHHHHHHhccCCeEEE
Confidence 76544444422233322233577766
No 196
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=47.39 E-value=2.6e+02 Score=26.63 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=63.7
Q ss_pred cccccCCCCCCCCCchHHHHHHHHhhccCCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC-ccceEEeecC
Q 024292 94 TAEVYGSRASFGAINSETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS-SVELYQLHWA 171 (269)
Q Consensus 94 TA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~-R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d-yiDl~~lH~p 171 (269)
..-.||. |+.|-++|+....+.| .+=++|.|=+...-.+-+-+.+.+.+++-++.=..+ .+.++.+|.|
T Consensus 64 ~d~VfGG---------~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tp 134 (454)
T cd01973 64 DSAVFGG---------AKRVEEGVLVLARRYPDLRVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTP 134 (454)
T ss_pred CceEECc---------HHHHHHHHHHHHHhcCCCCEEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCC
Confidence 3457776 7788888887654332 244677777643112233333333333222110011 4788999988
Q ss_pred CCCC--hHHHHHHHHHHHH--------cCCccEEEecCcCHHHHHHHHHHHHhcCCCeeE
Q 024292 172 GIWG--NEGFIDGLGDAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 172 ~~~~--~~~~~~~L~~l~~--------~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 221 (269)
+... ..+...+++.+.+ +++|--||-.+ ++..++++.++.+..|+.+.+
T Consensus 135 gF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~-~~~D~~ei~~lL~~~Gl~v~~ 193 (454)
T cd01973 135 SFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWV-NPGDVVELKHYLSEMDVEANI 193 (454)
T ss_pred CcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEEE
Confidence 7632 2333333333332 45677776443 456677777777777766543
No 197
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=47.37 E-value=2.2e+02 Score=25.89 Aligned_cols=125 Identities=22% Similarity=0.255 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCC---CCCcEEEEecCCCCCCCCCHHHHH
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD---PEVEVTVATKFAALPWRLGRQSVL 148 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~---~R~~v~I~tK~~~~~~~~~~~~i~ 148 (269)
.+.|+...+++.+++.|++=|=-+ |. |-++-+-|...-... .-+++-++|-. ...
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlT---GG---------EPllR~dl~eIi~~l~~~~~~~islTTNG----------~~L 100 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLT---GG---------EPLLRKDLDEIIARLARLGIRDLSLTTNG----------VLL 100 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEe---CC---------CchhhcCHHHHHHHHhhcccceEEEecch----------hhH
Confidence 357899999999999999877422 32 434333333221110 02577777775 355
Q ss_pred HHHHHHHHHhCCCccceEEeecCCC---------CChHHHHHHHHHHHHcCC----ccEEEecCcCHHHHHHHHHHHHhc
Q 024292 149 AALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKR 215 (269)
Q Consensus 149 ~~l~~sL~~L~~dyiDl~~lH~p~~---------~~~~~~~~~L~~l~~~G~----ir~iGvSn~~~~~l~~~~~~~~~~ 215 (269)
.....-|+.-|++.|. +-+|..|+ -....+++.+++.++.|. |-.+=+-+.+.+++..+++++...
T Consensus 101 ~~~a~~Lk~AGl~rVN-VSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~ 179 (322)
T COG2896 101 ARRAADLKEAGLDRVN-VSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKER 179 (322)
T ss_pred HHHHHHHHHcCCcEEE-eecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhc
Confidence 6667777888877665 34455443 125789999999999985 346667778889999999988776
Q ss_pred CCCe
Q 024292 216 GIPL 219 (269)
Q Consensus 216 ~~~~ 219 (269)
+..+
T Consensus 180 ~~~l 183 (322)
T COG2896 180 GAQL 183 (322)
T ss_pred CCce
Confidence 6543
No 198
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=47.25 E-value=92 Score=23.47 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=45.0
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC---CccceEEeecCCC--CChHHHHHHHHHHHHc
Q 024292 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (269)
Q Consensus 126 R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~---dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~ 189 (269)
|=-+.|+-|++. ...+..+++.+.+.++.... ...|++++-.+.. .+..++.+.|..|.+.
T Consensus 39 R~GisVsKKvgk---AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 39 RVGISVSKKVGN---AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred EEEEEEecccCc---hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 667888888863 57788899999998887643 3579999988765 4566777777766554
No 199
>PRK05414 urocanate hydratase; Provisional
Probab=47.24 E-value=69 Score=30.97 Aligned_cols=90 Identities=10% Similarity=0.017 Sum_probs=61.4
Q ss_pred CCcEEEEecCCCCCCCCCHH--HHHH--------HHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEE
Q 024292 126 EVEVTVATKFAALPWRLGRQ--SVLA--------ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAV 195 (269)
Q Consensus 126 R~~v~I~tK~~~~~~~~~~~--~i~~--------~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~i 195 (269)
+.++||++-+|.... -.|. .+.. .-...-+|+.+.|+|.+. .+.++.++..++.+++|+..+|
T Consensus 166 ~G~~~lTaGLGGMgG-AQPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~------~~Ldeal~~~~~a~~~~~~~SI 238 (556)
T PRK05414 166 AGRLVLTAGLGGMGG-AQPLAATMAGAVCLAVEVDESRIDKRLRTGYLDEKA------DDLDEALALAEEAKAAGEPLSI 238 (556)
T ss_pred ceeEEEEecCCcccc-ccHHHHHhcCceEEEEEECHHHHHHHHhCCcceeEc------CCHHHHHHHHHHHHHcCCceEE
Confidence 689999999986321 1111 0000 012334688899999542 3578999999999999999999
Q ss_pred EecCcCHHHHHHHHHHHHhcCCCeeE--EcccC
Q 024292 196 GVSNYSEKRLRNAYEKLKKRGIPLAS--NQVNY 226 (269)
Q Consensus 196 GvSn~~~~~l~~~~~~~~~~~~~~~~--~Q~~~ 226 (269)
|+-..-.+.++++++. ++.|++ -|...
T Consensus 239 g~~GNaadv~~~l~~~----~i~pDlvtDQTSa 267 (556)
T PRK05414 239 GLLGNAADVLPELVRR----GIRPDLVTDQTSA 267 (556)
T ss_pred EEeccHHHHHHHHHHc----CCCCCccCcCccc
Confidence 9988777777777543 565554 46655
No 200
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=47.20 E-value=1.3e+02 Score=26.43 Aligned_cols=51 Identities=24% Similarity=0.210 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCC
Q 024292 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQD 258 (269)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G 258 (269)
++.+|.++.+.++..+++..+.+.+++. .-+-..+++.|+.++...||..+
T Consensus 205 s~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~~~la~~~g~~v~~ld~l~~~ 255 (282)
T cd01017 205 SPKQLAELVEFVKKSDVKYIFFEENASS-------KIAETLAKETGAKLLVLNPLETL 255 (282)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HHHHHHHHHcCCcEEEecccccc
Confidence 6788999988888888887777666653 12445677889988877777643
No 201
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=47.19 E-value=82 Score=27.95 Aligned_cols=58 Identities=7% Similarity=0.014 Sum_probs=37.6
Q ss_pred CcCHHHHHHHHHHHHhcCCCeeEEcccCCc---------cCC--CcchhhHHHHHHHcCCeEEEccccc
Q 024292 199 NYSEKRLRNAYEKLKKRGIPLASNQVNYSL---------IYR--KPEENGVKAACDELGITLIAYCPIA 256 (269)
Q Consensus 199 n~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~---------~~~--~~~~~~l~~~~~~~gi~via~~pl~ 256 (269)
+.+.+...+.++.|.++|++...+--.+.- ... ...-.+|+++++++||+|+.|.--.
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~ 96 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSE 96 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCC
Confidence 346788999999999999876666444431 111 1111379999999999999876543
No 202
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=47.01 E-value=44 Score=30.53 Aligned_cols=34 Identities=18% Similarity=0.444 Sum_probs=22.2
Q ss_pred cccCCccCCCcchh---hHHHHHHHcCCeEEEccccc
Q 024292 223 QVNYSLIYRKPEEN---GVKAACDELGITLIAYCPIA 256 (269)
Q Consensus 223 Q~~~s~~~~~~~~~---~l~~~~~~~gi~via~~pl~ 256 (269)
...||..+....++ ++.+.|+++||.+-.|-...
T Consensus 125 ~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 125 YTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp T-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS
T ss_pred CCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch
Confidence 44566655433332 69999999999999887664
No 203
>PTZ00081 enolase; Provisional
Probab=47.01 E-value=1.5e+02 Score=28.18 Aligned_cols=97 Identities=12% Similarity=0.047 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcC--CccEEEe--cCcCHHHHHHHHHHHHhcCC
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGV--SNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G--~ir~iGv--Sn~~~~~l~~~~~~~~~~~~ 217 (269)
.+++.+.+-+.+.++.+ +++++-.|-+ ++-|+.+.+|.+.= .+.-+|= +..+++.+.++++. -
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~---~~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~-----~ 347 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFD---QDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEK-----K 347 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCC---cccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHh-----C
Confidence 45666666555555554 4677776643 33466666666553 5554442 34568888888765 2
Q ss_pred CeeEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024292 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 218 ~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
..+++|+..|-+-.-.+..++...|+++|+.++.
T Consensus 348 aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 348 ACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred CCCEEEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 4677777776544333333588899999988876
No 204
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.96 E-value=1e+02 Score=25.93 Aligned_cols=88 Identities=16% Similarity=0.205 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCc-CHHHHHHHHHHHHhcCCCeeE
Q 024292 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~~~~~ 221 (269)
+++...+-+ +.|-+-|+..|.+=+ ...+..+.+++++++..=-.||.-+. ++++++++++. |..|.+
T Consensus 14 ~~~~a~~ia-~al~~gGi~~iEit~-------~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a----GA~Fiv 81 (201)
T PRK06015 14 DVEHAVPLA-RALAAGGLPAIEITL-------RTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA----GSRFIV 81 (201)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEeC-------CCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc----CCCEEE
Confidence 455444443 355566765555432 22356677777766644356888876 88888887664 444544
Q ss_pred EcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024292 222 NQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 222 ~Q~~~s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
||. -. .+++++|+++||.++.
T Consensus 82 -----SP~---~~-~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 82 -----SPG---TT-QELLAAANDSDVPLLP 102 (201)
T ss_pred -----CCC---CC-HHHHHHHHHcCCCEeC
Confidence 232 11 2599999999998874
No 205
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=46.85 E-value=2e+02 Score=25.09 Aligned_cols=26 Identities=4% Similarity=-0.083 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccc
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTAEV 97 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~ 97 (269)
.+.++..++++...++|+..|+....
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iEvg~~ 42 (268)
T cd07940 17 LTPEEKLEIARQLDELGVDVIEAGFP 42 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34588899999999999999998643
No 206
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=46.82 E-value=1e+02 Score=30.96 Aligned_cols=96 Identities=17% Similarity=0.080 Sum_probs=55.0
Q ss_pred eeecccccCCCCCC-CCC---chHHHHHHHHhhccCCCCCCcEEEEecCCCC---------CCCCCH----HHHHHHHHH
Q 024292 91 FFDTAEVYGSRASF-GAI---NSETLLGRFIKERKQRDPEVEVTVATKFAAL---------PWRLGR----QSVLAALKD 153 (269)
Q Consensus 91 ~~DTA~~Yg~g~~~-~~~---~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~---------~~~~~~----~~i~~~l~~ 153 (269)
+|.|+..|.+|.-+ |+. -...++.++++..+ .+++..+=.-.. ..+.++ +...+.+.+
T Consensus 5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G-----~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 79 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRG-----HEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKR 79 (673)
T ss_pred EEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcC-----CeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 67888888887543 222 22344444444443 345544432110 012232 456677888
Q ss_pred HHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCcc
Q 024292 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir 193 (269)
.+++||+++ |.+.-. .++.-.+.+.+.+.+|.++|.|=
T Consensus 80 ~~~~l~i~~-d~f~rt-t~~~h~~~v~~~~~~L~~~G~iy 117 (673)
T PRK00133 80 DFAGFGISF-DNYGST-HSEENRELAQEIYLKLKENGYIY 117 (673)
T ss_pred HHHHhCCCC-CCCccC-CcHHHHHHHHHHHHHHHHCCCEE
Confidence 999999984 743211 11123578889999999999764
No 207
>COG0218 Predicted GTPase [General function prediction only]
Probab=46.78 E-value=1.8e+02 Score=24.59 Aligned_cols=128 Identities=13% Similarity=0.000 Sum_probs=80.5
Q ss_pred cceeeEeCCCCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHC------CCCeeecccccCCCCCCCCCc
Q 024292 35 AEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDN------GITFFDTAEVYGSRASFGAIN 108 (269)
Q Consensus 35 ~m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~------Gin~~DTA~~Yg~g~~~~~~~ 108 (269)
...+..+.+.-.-|=.-|||-+.... .-++....++...++. .+-.+|.-..-- .
T Consensus 62 ~iNff~~~~~~~lVDlPGYGyAkv~k-----------~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--------~ 122 (200)
T COG0218 62 LINFFEVDDELRLVDLPGYGYAKVPK-----------EVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK--------D 122 (200)
T ss_pred eeEEEEecCcEEEEeCCCcccccCCH-----------HHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc--------H
Confidence 34444454422233334677665321 2345666677777653 455677532221 1
Q ss_pred hHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccce--EEee-cCCCCChHHHHHHHHH
Q 024292 109 SETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVEL--YQLH-WAGIWGNEGFIDGLGD 185 (269)
Q Consensus 109 sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl--~~lH-~p~~~~~~~~~~~L~~ 185 (269)
.+..+=+||.... ..=++|.||. .........+.+....+.|+.+..|- +++. .....+.++.++.+.+
T Consensus 123 ~D~em~~~l~~~~----i~~~vv~tK~----DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~ 194 (200)
T COG0218 123 LDREMIEFLLELG----IPVIVVLTKA----DKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILE 194 (200)
T ss_pred HHHHHHHHHHHcC----CCeEEEEEcc----ccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHH
Confidence 2667778998887 4788999998 56778888889999999998877765 3333 2333667888888877
Q ss_pred HHHc
Q 024292 186 AVEQ 189 (269)
Q Consensus 186 l~~~ 189 (269)
...+
T Consensus 195 ~~~~ 198 (200)
T COG0218 195 WLKE 198 (200)
T ss_pred Hhhc
Confidence 6654
No 208
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=46.72 E-value=1.2e+02 Score=26.07 Aligned_cols=110 Identities=11% Similarity=0.139 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCC----CChHHHHHHHHHHHHcCC-ccEEEecCc------CHHHHHHHHHH
Q 024292 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGL-VKAVGVSNY------SEKRLRNAYEK 211 (269)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~----~~~~~~~~~L~~l~~~G~-ir~iGvSn~------~~~~l~~~~~~ 211 (269)
.++.+..+++...+ ..-+ +-| ++|.-+. ......++.+++|++.|. |-.||+=.| ++..+...++.
T Consensus 101 G~~~i~~af~~ar~-~~P~-a~l-~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~ 177 (254)
T smart00633 101 GEDYIEKAFRYARE-ADPD-AKL-FYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDR 177 (254)
T ss_pred ChHHHHHHHHHHHH-hCCC-CEE-EEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHH
Confidence 34666666665533 3322 222 3343211 113467888999999998 999998555 46778888887
Q ss_pred HHhcCCCeeEEcccCCccCCC---c-chhhHHHHHHHcC--CeEEEcccc
Q 024292 212 LKKRGIPLASNQVNYSLIYRK---P-EENGVKAACDELG--ITLIAYCPI 255 (269)
Q Consensus 212 ~~~~~~~~~~~Q~~~s~~~~~---~-~~~~l~~~~~~~g--i~via~~pl 255 (269)
....|.++.+-.+.+...... . .-..+++.|.++. .+|+-|.-.
T Consensus 178 ~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg~~ 227 (254)
T smart00633 178 FASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWGVT 227 (254)
T ss_pred HHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeCCc
Confidence 777777777766666543210 0 1125888888875 777777644
No 209
>PRK10658 putative alpha-glucosidase; Provisional
Probab=46.71 E-value=1.3e+02 Score=30.22 Aligned_cols=90 Identities=14% Similarity=0.285 Sum_probs=58.9
Q ss_pred CccceEEeecCCCCChHHHHHHHHHHHHc---------CCccEEEec-CcCHHHHHHHHHHHHhcCCCeeEEcccCCccC
Q 024292 161 SSVELYQLHWAGIWGNEGFIDGLGDAVEQ---------GLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (269)
Q Consensus 161 dyiDl~~lH~p~~~~~~~~~~~L~~l~~~---------G~ir~iGvS-n~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~ 230 (269)
..+|.|++..|+ +.++++...+|--. |.-..-+.. +++.+.+.++++..++.++|++++.+.+-...
T Consensus 234 ~~ldyy~~~G~t---p~~v~~~Yt~LTGrp~lpP~WalG~w~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~ 310 (665)
T PRK10658 234 EYLEYFVIDGPT---PKEVLDRYTALTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDCFWMK 310 (665)
T ss_pred CcEEEEEEeCCC---HHHHHHHHHHHhCCCCCCchhhhheeeecccccCCCHHHHHHHHHHHHHcCCCceEEEEchhhhc
Confidence 579999999874 46677666655321 221111111 34667788888888889999998877642111
Q ss_pred ------------CCcchhhHHHHHHHcCCeEEEcc
Q 024292 231 ------------RKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 231 ------------~~~~~~~l~~~~~~~gi~via~~ 253 (269)
+-++-.++++..+++|+.++.+-
T Consensus 311 ~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i 345 (665)
T PRK10658 311 EFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWI 345 (665)
T ss_pred CCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEec
Confidence 11222369999999999999773
No 210
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=46.63 E-value=2e+02 Score=25.21 Aligned_cols=127 Identities=11% Similarity=0.068 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCC---chHHHHH---------HHHhhccCCCCCCcEEEEecCCCCCC
Q 024292 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAI---NSETLLG---------RFIKERKQRDPEVEVTVATKFAALPW 140 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~---~sE~~lG---------~al~~~~~~~~R~~v~I~tK~~~~~~ 140 (269)
+.+...++++...+.|++.++-.--|.++.+++|. .+++.+- +.+++...+ +.-.+++.|=..+
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~vlm~Y~N~--- 102 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIVIFTYYNP--- 102 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecccH---
Confidence 45888999999999999999999888888887765 4444322 223333211 1123444443311
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCc-CHHHHHHHHHH
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEK 211 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~-~~~~l~~~~~~ 211 (269)
-....+++-++.+.---+|-+.+|.. +.++.-+.++.+++.|.---.=++-. +.++++++.+.
T Consensus 103 -----i~~~G~e~F~~~~~~aGvdgviipDL---P~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~ 166 (263)
T CHL00200 103 -----VLHYGINKFIKKISQAGVKGLIIPDL---PYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARA 166 (263)
T ss_pred -----HHHhCHHHHHHHHHHcCCeEEEecCC---CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh
Confidence 01112333333332223688888864 56888888888888886444444443 45788887665
No 211
>PLN02428 lipoic acid synthase
Probab=46.61 E-value=2.4e+02 Score=26.00 Aligned_cols=164 Identities=15% Similarity=0.198 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHHCCCCeeecc----cccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 024292 73 KMKAAKAAFDTSLDNGITFFDTA----EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA----~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~ 148 (269)
+.++..++.+.+.+.|++++=.. +.|.++. -..+-+.++...... ..+.|..=. + ++-.+
T Consensus 131 d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~g-------a~~~~elir~Ir~~~--P~i~Ie~L~---p-df~~d--- 194 (349)
T PLN02428 131 DPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGG-------SGHFAETVRRLKQLK--PEILVEALV---P-DFRGD--- 194 (349)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCccc-------HHHHHHHHHHHHHhC--CCcEEEEeC---c-cccCC---
Confidence 44666777788888999876332 1233322 224445555543211 133333321 1 11101
Q ss_pred HHHHHHHHHhCCCccceEEeecCCC------------CChHHHHHHHHHHHHc--CCcc----EEEecCcCHHHHHHHHH
Q 024292 149 AALKDSLFRLGLSSVELYQLHWAGI------------WGNEGFIDGLGDAVEQ--GLVK----AVGVSNYSEKRLRNAYE 210 (269)
Q Consensus 149 ~~l~~sL~~L~~dyiDl~~lH~p~~------------~~~~~~~~~L~~l~~~--G~ir----~iGvSn~~~~~l~~~~~ 210 (269)
++.|+.|.-.-+|. +-|+++. ...++.++.|+.+++. |..- -+|+ .-+.+++.+.++
T Consensus 195 ---~elL~~L~eAG~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~ 269 (349)
T PLN02428 195 ---LGAVETVATSGLDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTME 269 (349)
T ss_pred ---HHHHHHHHHcCCCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHH
Confidence 33333332223555 3366653 1257889999999988 7643 2566 457888888888
Q ss_pred HHHhcCCCeeEE-cc--------cCCccCCCcchhhHHHHHHHcCCeEEEcccccC
Q 024292 211 KLKKRGIPLASN-QV--------NYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 211 ~~~~~~~~~~~~-Q~--------~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~ 257 (269)
.++..++.+..+ |. +.+.+-...+-+.+-+++.+.|...++-+||-.
T Consensus 270 ~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 270 DLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 887776543222 32 222222222223588889999999999999864
No 212
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=46.45 E-value=1.8e+02 Score=26.62 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=58.4
Q ss_pred EEeecCCC------------CChHHHHHHHHHHHHcCC---ccEEEec--CcCHHHHHHHHHHHHhcCCCeeEEcccCCc
Q 024292 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (269)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~~L~~l~~~G~---ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~ 228 (269)
+-||.+++ ++.+++++++.++.+.|+ ++++=+- |.+.++++++.++++ +.+..++-++||+
T Consensus 208 iSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk--~l~~~vnlI~~N~ 285 (336)
T PRK14470 208 ISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLA--GIPVRLNPIAVND 285 (336)
T ss_pred EecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHh--cCCCeEEEeccCC
Confidence 45687664 346789999999987754 2232222 567888988888875 3456888889998
Q ss_pred cCCC---cchh---hHHHHH--HHcCCeEEEcccccC
Q 024292 229 IYRK---PEEN---GVKAAC--DELGITLIAYCPIAQ 257 (269)
Q Consensus 229 ~~~~---~~~~---~l~~~~--~~~gi~via~~pl~~ 257 (269)
.... +.+. ...+.. +++|+.+......+.
T Consensus 286 ~~~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G~ 322 (336)
T PRK14470 286 ATGRYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQ 322 (336)
T ss_pred CCCCccCCCHHHHHHHHHHHHHccCCeEEEEECCCCC
Confidence 5431 1111 344555 356898888877654
No 213
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=46.38 E-value=1.5e+02 Score=23.62 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=69.8
Q ss_pred HHHHHHHHH-HCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 024292 77 AKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (269)
Q Consensus 77 ~~~~l~~A~-~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL 155 (269)
-.+++.+++ +.|+..+.+.-.-.. |+++-.|+++.. +-+.|++-- -........+-+.|
T Consensus 28 gakvia~~l~d~GfeVi~~g~~~tp---------~e~v~aA~~~dv-----~vIgvSsl~------g~h~~l~~~lve~l 87 (143)
T COG2185 28 GAKVIARALADAGFEVINLGLFQTP---------EEAVRAAVEEDV-----DVIGVSSLD------GGHLTLVPGLVEAL 87 (143)
T ss_pred chHHHHHHHHhCCceEEecCCcCCH---------HHHHHHHHhcCC-----CEEEEEecc------chHHHHHHHHHHHH
Confidence 345777777 789999877655554 899989887653 344444443 34556778888899
Q ss_pred HHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHH
Q 024292 156 FRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (269)
Q Consensus 156 ~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~ 210 (269)
+..|.+. ++.+-... .++++ +.+|++.|--+.++-.+--.+.+..++.
T Consensus 88 re~G~~~--i~v~~GGv-ip~~d----~~~l~~~G~~~if~pgt~~~~~~~~v~~ 135 (143)
T COG2185 88 REAGVED--ILVVVGGV-IPPGD----YQELKEMGVDRIFGPGTPIEEALSDLLT 135 (143)
T ss_pred HHhCCcc--eEEeecCc-cCchh----HHHHHHhCcceeeCCCCCHHHHHHHHHH
Confidence 9999874 44333222 23333 7788899999988886544444444443
No 214
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=46.30 E-value=1.1e+02 Score=29.71 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=55.1
Q ss_pred eeecccccCCCCCC-CCC----chHHHHHHHHhhccCCCCCCcEEEEecCCCC---------CCCCCH----HHHHHHHH
Q 024292 91 FFDTAEVYGSRASF-GAI----NSETLLGRFIKERKQRDPEVEVTVATKFAAL---------PWRLGR----QSVLAALK 152 (269)
Q Consensus 91 ~~DTA~~Yg~g~~~-~~~----~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~---------~~~~~~----~~i~~~l~ 152 (269)
+|+|+..|.+|.-+ |+. ..-.++.++++..+ .+++..+=+-.. ..+.++ +...+.+.
T Consensus 6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G-----~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 80 (556)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKG-----NEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHK 80 (556)
T ss_pred EEecCCCCCCCCccccccccchhHHHHHHHHHHhcC-----CceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 67888888776542 111 11234455554443 455554433210 012222 45677888
Q ss_pred HHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCcc
Q 024292 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (269)
Q Consensus 153 ~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir 193 (269)
+.+++||+++ |.+.-. .++.-.+.+.+.+.+|.+.|.|-
T Consensus 81 ~~~~~l~i~~-d~~~~t-~~~~~~~~~~~~~~~L~~~G~~y 119 (556)
T PRK12268 81 EDFKKLGISY-DLFTRT-TSPNHHEVVQEFFLKLYENGYIY 119 (556)
T ss_pred HHHHHcCCcC-CCCcCC-CCHHHHHHHHHHHHHHHHCCCeE
Confidence 9999999974 753211 12123578899999999999864
No 215
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.75 E-value=94 Score=31.32 Aligned_cols=71 Identities=10% Similarity=0.116 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHc--CCccEEEecCcCHHHHHHHHHHHH
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLK 213 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~--G~ir~iGvSn~~~~~l~~~~~~~~ 213 (269)
.+-+.+++-++.....-....--+|+|+..+.+. ....++|.+..++ +.+++|.++|.....+..+.+.|.
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq 176 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCL 176 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHH
Confidence 3456666666554433333445788988776544 4566777777777 899999999987777777766654
No 216
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=45.71 E-value=2.7e+02 Score=26.61 Aligned_cols=104 Identities=18% Similarity=0.131 Sum_probs=54.2
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-----ChHHHHHHHH
Q 024292 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----GNEGFIDGLG 184 (269)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~-----~~~~~~~~L~ 184 (269)
|+.|-++|.+...+.+.+-|+|.|=+...--+-+.+.+.+.++ ++++ +.++.+|.+... ....++++|-
T Consensus 104 ~~kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi~~v~~~~~---~~~~---~pvi~v~t~Gf~g~~~~G~~~a~~al~ 177 (475)
T PRK14478 104 EKKLFKAIDEIIEKYAPPAVFVYQTCVVALIGDDIDAVCKRAA---EKFG---IPVIPVNSPGFVGNKNLGNKLAGEALL 177 (475)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHHH---HhhC---CCEEEEECCCcccchhhhHHHHHHHHH
Confidence 7778888887654332355667666532111223333333332 3343 678888887652 2333444443
Q ss_pred H-HH--------HcCCccEEEecCcCHHHHHHHHHHHHhcCCCee
Q 024292 185 D-AV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 185 ~-l~--------~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (269)
+ +. +.+.|--||-.++. ..++++.++++..|+.+.
T Consensus 178 ~~l~~~~~~~~~~~~~VNiiG~~~~~-gd~~elk~lL~~~Gl~v~ 221 (475)
T PRK14478 178 DHVIGTVEPEDTTPYDINILGEYNLA-GELWQVKPLLDRLGIRVV 221 (475)
T ss_pred HHHhccCCccCCCCCeEEEEeCCCCC-CCHHHHHHHHHHcCCeEE
Confidence 3 33 23567788866653 233444444555676554
No 217
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=44.80 E-value=1e+02 Score=31.73 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHc--CCccEEEecCcCHHHHHHHHHHHHhcCCCe
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~--G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 219 (269)
.+.+.+++-++...........-+|+|+..+.+. .+.+++|.+..++ ..+++|-++|.....+..+.+.
T Consensus 99 rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR-------- 169 (830)
T PRK07003 99 RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR-------- 169 (830)
T ss_pred ccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh--------
Confidence 3455666666544333222344788888776544 3557777777777 5899999999765555555443
Q ss_pred eEEcccCCccCCCcchhhHHHHHHHcCCe
Q 024292 220 ASNQVNYSLIYRKPEENGVKAACDELGIT 248 (269)
Q Consensus 220 ~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~ 248 (269)
|.++.|..+....-..-|...|++.||.
T Consensus 170 -Cq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 170 -CLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred -eEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 2344555444322222244556666654
No 218
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=44.74 E-value=2.2e+02 Score=25.02 Aligned_cols=135 Identities=11% Similarity=0.105 Sum_probs=68.0
Q ss_pred ChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCC------------
Q 024292 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA------------ 137 (269)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~------------ 137 (269)
+.+|.+...+.++..++.|++-+=..-..|-+.+-...+=++++-.+.+.... |-.|++.+-...
T Consensus 14 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~---~~~vi~gv~~~s~~~~i~~a~~a~ 90 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNG---RVPVIAGTGSNATEEAISLTKFAE 90 (285)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC---CCeEEEeCCCccHHHHHHHHHHHH
Confidence 45777888889999999998866432222211110001223444444444321 233443332110
Q ss_pred ----------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHH
Q 024292 138 ----------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (269)
Q Consensus 138 ----------~~--~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l 205 (269)
.| ...+.+.+.+-+++..+..+ +++++-+.|......-..+.+++|.+...|..|=-|+.+...+
T Consensus 91 ~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~---~pi~lYn~P~~tg~~l~~~~l~~L~~~~~v~giK~s~~d~~~~ 167 (285)
T TIGR00674 91 DVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVD---LPIILYNVPSRTGVSLYPETVKRLAEEPNIVAIKEATGNLERI 167 (285)
T ss_pred HcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCC---CCEEEEECcHHhcCCCCHHHHHHHHcCCCEEEEEeCCCCHHHH
Confidence 11 12345666666666666542 5677777775433222344555555555444333456566666
Q ss_pred HHHHH
Q 024292 206 RNAYE 210 (269)
Q Consensus 206 ~~~~~ 210 (269)
.++.+
T Consensus 168 ~~l~~ 172 (285)
T TIGR00674 168 SEIKA 172 (285)
T ss_pred HHHHH
Confidence 66543
No 219
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=44.69 E-value=1.3e+02 Score=25.42 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCc-CHHHHHHHHHHHHhcCCCee
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~~~~ 220 (269)
.+++...+ +-+.|-.-|++.+.+=+ + ..+.++.+++++++..=-.||.-+. ++++.+.+++. |..|.
T Consensus 17 ~~~e~a~~-~~~al~~~Gi~~iEit~-~------t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a----GA~Fi 84 (204)
T TIGR01182 17 DDVDDALP-LAKALIEGGLRVLEVTL-R------TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA----GAQFI 84 (204)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEEeC-C------CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc----CCCEE
Confidence 34554443 33456667766555433 2 2456677777776644366898886 88888888664 44554
Q ss_pred EEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024292 221 SNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 221 ~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
+ +|.. . .+++++|+++||.++.
T Consensus 85 v-----sP~~---~-~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 V-----SPGL---T-PELAKHAQDHGIPIIP 106 (204)
T ss_pred E-----CCCC---C-HHHHHHHHHcCCcEEC
Confidence 3 2322 1 2599999999998885
No 220
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=44.52 E-value=1.1e+02 Score=27.37 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeec-CCC---CChHH---HHHHHHHHHHcCCc-cEEEecCcCHHHHHHHHHHH
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHW-AGI---WGNEG---FIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKL 212 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~-p~~---~~~~~---~~~~L~~l~~~G~i-r~iGvSn~~~~~l~~~~~~~ 212 (269)
..+.+.+++.++..++ -| +|=+++-. -.. ...+| +++...+.. .|++ -.+|++..+.++..++.+.+
T Consensus 25 ~iD~~~l~~lv~~li~-~G---v~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv~~~~t~~ai~~a~~A 99 (309)
T cd00952 25 TVDLDETARLVERLIA-AG---VDGILTMGTFGECATLTWEEKQAFVATVVETV-AGRVPVFVGATTLNTRDTIARTRAL 99 (309)
T ss_pred CcCHHHHHHHHHHHHH-cC---CCEEEECcccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEEeccCCHHHHHHHHHHH
Confidence 4566767766665554 44 45444432 221 33444 444444433 3443 46899888888888888888
Q ss_pred HhcCCCeeEEccc-CCccCCCcchhhHHHH----HHHc-CCeEEEcc-cccCCcc
Q 024292 213 KKRGIPLASNQVN-YSLIYRKPEENGVKAA----CDEL-GITLIAYC-PIAQDSP 260 (269)
Q Consensus 213 ~~~~~~~~~~Q~~-~s~~~~~~~~~~l~~~----~~~~-gi~via~~-pl~~G~l 260 (269)
+..|..-..+-.+ |.... +++++++ |... +++++.|. |-..|..
T Consensus 100 ~~~Gad~vlv~~P~y~~~~----~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~ 150 (309)
T cd00952 100 LDLGADGTMLGRPMWLPLD----VDTAVQFYRDVAEAVPEMAIAIYANPEAFKFD 150 (309)
T ss_pred HHhCCCEEEECCCcCCCCC----HHHHHHHHHHHHHhCCCCcEEEEcCchhcCCC
Confidence 8888654444434 43332 1245554 4446 69999994 4444543
No 221
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=44.51 E-value=1.1e+02 Score=23.48 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=45.7
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC---CccceEEeecCCC--CChHHHHHHHHHHHHc
Q 024292 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (269)
Q Consensus 126 R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~---dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~ 189 (269)
|=-+.|+-|++. ....+..+++.+.+.++.+.. ...|++++-.+.. .+..++.+.|..|.+.
T Consensus 48 R~G~~VsKK~~~--~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 48 RFGISISQKVSK--KAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred EEEEEEeccccc--chhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 566778888653 357788899999999987643 3579999998765 4567888888777654
No 222
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=44.12 E-value=1.9e+02 Score=24.07 Aligned_cols=157 Identities=13% Similarity=0.070 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024292 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~ 152 (269)
..++..++++.+.+.|+.-+=+.+.+ =+...+.++. ..+.+.+=++.+......+.....++
T Consensus 15 t~~~i~~~~~~a~~~~~~av~v~p~~-----------v~~~~~~l~~-------~~~~v~~~~~fp~g~~~~~~k~~eve 76 (203)
T cd00959 15 TEEDIRKLCDEAKEYGFAAVCVNPCF-----------VPLAREALKG-------SGVKVCTVIGFPLGATTTEVKVAEAR 76 (203)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcHHH-----------HHHHHHHcCC-------CCcEEEEEEecCCCCCcHHHHHHHHH
Confidence 45889999999999886665443322 1223333332 23555555543223344566667788
Q ss_pred HHHHHhCCCccceEEeecCC-CCChHHHHHHHHHHHHc--CCcc--EEEecCcCHHHHHHHHHHHHhcCCCeeEEccc--
Q 024292 153 DSLFRLGLSSVELYQLHWAG-IWGNEGFIDGLGDAVEQ--GLVK--AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN-- 225 (269)
Q Consensus 153 ~sL~~L~~dyiDl~~lH~p~-~~~~~~~~~~L~~l~~~--G~ir--~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~-- 225 (269)
+.++ +|.|-||++.-=..- .-..+.+++.+.++++. |+.- -+...-.+.+.+.++.+.+...|. +++...
T Consensus 77 ~A~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~Ga--D~IKTsTG 153 (203)
T cd00959 77 EAIA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGA--DFIKTSTG 153 (203)
T ss_pred HHHH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCC--CEEEcCCC
Confidence 7776 699999987653321 12345677777777776 4422 234444578899999998887775 455555
Q ss_pred CCccCCCcchhhH-HHHHHHcCCeEEE
Q 024292 226 YSLIYRKPEENGV-KAACDELGITLIA 251 (269)
Q Consensus 226 ~s~~~~~~~~~~l-~~~~~~~gi~via 251 (269)
|....-..+.-.+ .+.++ ..++|.+
T Consensus 154 ~~~~~at~~~v~~~~~~~~-~~v~ik~ 179 (203)
T cd00959 154 FGPGGATVEDVKLMKEAVG-GRVGVKA 179 (203)
T ss_pred CCCCCCCHHHHHHHHHHhC-CCceEEE
Confidence 7544433332122 33333 4577766
No 223
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=43.86 E-value=1.2e+02 Score=25.50 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCc-CHHHHHHHHHHHHhcCCCeeE
Q 024292 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~~~~~ 221 (269)
+.+...+ +-+.|-.-|+..+.+ -+-. .+.++.+++++++--=-.||..+. +.++++++++. |..|.+
T Consensus 18 ~~~~a~~-~~~al~~gGi~~iEi---T~~t----~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~a----GA~Fiv 85 (196)
T PF01081_consen 18 DPEDAVP-IAEALIEGGIRAIEI---TLRT----PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAA----GAQFIV 85 (196)
T ss_dssp SGGGHHH-HHHHHHHTT--EEEE---ETTS----TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHH----T-SEEE
T ss_pred CHHHHHH-HHHHHHHCCCCEEEE---ecCC----ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHc----CCCEEE
Confidence 3444433 333555566554443 2221 234555555554433356898886 88888888765 445554
Q ss_pred EcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024292 222 NQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 222 ~Q~~~s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
- |. - ..+++++|+++||.++.
T Consensus 86 S-----P~---~-~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 86 S-----PG---F-DPEVIEYAREYGIPYIP 106 (196)
T ss_dssp E-----SS------HHHHHHHHHHTSEEEE
T ss_pred C-----CC---C-CHHHHHHHHHcCCcccC
Confidence 2 21 1 12699999999999985
No 224
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=43.80 E-value=1.2e+02 Score=30.18 Aligned_cols=101 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCccceE---EeecCCCCChHHHHHHHHHHHHcCC-ccE---------EEecCcCHHHHHHHHHHHHh
Q 024292 148 LAALKDSLFRLGLSSVELY---QLHWAGIWGNEGFIDGLGDAVEQGL-VKA---------VGVSNYSEKRLRNAYEKLKK 214 (269)
Q Consensus 148 ~~~l~~sL~~L~~dyiDl~---~lH~p~~~~~~~~~~~L~~l~~~G~-ir~---------iGvSn~~~~~l~~~~~~~~~ 214 (269)
+..+-..|.++|.+.|+++ .++---++-.++-|+.|+.+++... ++- +|.++++-+.+++.++.+..
T Consensus 29 ~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~ 108 (593)
T PRK14040 29 MLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVK 108 (593)
T ss_pred HHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHh
Q ss_pred cCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024292 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 215 ~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
+|+...-+-...|-+..-.. .+++++++|..+.+
T Consensus 109 ~Gid~~rifd~lnd~~~~~~---ai~~ak~~G~~~~~ 142 (593)
T PRK14040 109 NGMDVFRVFDAMNDPRNLET---ALKAVRKVGAHAQG 142 (593)
T ss_pred cCCCEEEEeeeCCcHHHHHH---HHHHHHHcCCeEEE
No 225
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=43.59 E-value=2.3e+02 Score=24.93 Aligned_cols=132 Identities=12% Similarity=0.114 Sum_probs=67.0
Q ss_pred ChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchH--HHHHHHHhhccCCCCCCcEEEEecCCC----------
Q 024292 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSE--TLLGRFIKERKQRDPEVEVTVATKFAA---------- 137 (269)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE--~~lG~al~~~~~~~~R~~v~I~tK~~~---------- 137 (269)
+.+|.+...+.++..++.|++-+=..-..|-+.+ ....| +++-.+.+... .|-.+++.+-...
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~--ls~~Er~~~~~~~~~~~~---~~~~vi~gv~~~~~~~~i~~a~~ 91 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGTDGLVVVGTTGESPT--LTHEEHEELIRAVVEAVN---GRVPVIAGTGSNSTAEAIELTKF 91 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCcCCcccc--CCHHHHHHHHHHHHHHhC---CCCcEEeecCCchHHHHHHHHHH
Confidence 4577888999999999999987643222221111 11223 33333443332 1233443332210
Q ss_pred ------------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHH
Q 024292 138 ------------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEK 203 (269)
Q Consensus 138 ------------~~--~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~ 203 (269)
.| ...+.+.+.+-+++..+.. + +.+++-|.|......=..+.+.+|.+-+.|..|=-|+.+..
T Consensus 92 a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~--~-~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK~s~~d~~ 168 (292)
T PRK03170 92 AEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEAT--D-LPIILYNVPGRTGVDILPETVARLAEHPNIVGIKEATGDLE 168 (292)
T ss_pred HHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC--C-CCEEEEECccccCCCCCHHHHHHHHcCCCEEEEEECCCCHH
Confidence 11 1234566666666666654 2 56777777754222222344455544555555555555655
Q ss_pred HHHHHH
Q 024292 204 RLRNAY 209 (269)
Q Consensus 204 ~l~~~~ 209 (269)
.+.++.
T Consensus 169 ~~~~~~ 174 (292)
T PRK03170 169 RVSELI 174 (292)
T ss_pred HHHHHH
Confidence 655554
No 226
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=43.40 E-value=2.3e+02 Score=24.95 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHH--HCCCCeee----cccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHH
Q 024292 73 KMKAAKAAFDTSL--DNGITFFD----TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS 146 (269)
Q Consensus 73 ~~~~~~~~l~~A~--~~Gin~~D----TA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~ 146 (269)
+.++++++++.+. -.|.|-+. -+..|+. ..+.++... +++++.--+ .
T Consensus 101 saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~------------~~~y~~~an-----~~~~vi~qi----------E 153 (267)
T PRK10128 101 TAEQARQVVSATRYPPYGERGVGASVARAARWGR------------IENYMAQAN-----DSLCLLVQV----------E 153 (267)
T ss_pred CHHHHHHHHHhcCCCCCCCCCCCCccchhhccCC------------hHHHHHHhc-----cccEEEEEE----------C
Q ss_pred HHHHHHHHHHHhCCCccceEEe---------ecCCCCChHHHHHHHHH----HHHcCCccEEEecCcCHHHHHHHHHHHH
Q 024292 147 VLAALKDSLFRLGLSSVELYQL---------HWAGIWGNEGFIDGLGD----AVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (269)
Q Consensus 147 i~~~l~~sL~~L~~dyiDl~~l---------H~p~~~~~~~~~~~L~~----l~~~G~ir~iGvSn~~~~~l~~~~~~~~ 213 (269)
-.+.+++.=+-+.++.||.+++ +.+..+...++.+++++ .++.|| .+|+...+++...++++.
T Consensus 154 t~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~~~~~~~~a~~~~~~-- 229 (267)
T PRK10128 154 SKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK--AAGFLAVDPDMAQKCLAW-- 229 (267)
T ss_pred CHHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEEcCCCHHHHHHHHHc--
Q ss_pred hcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCC
Q 024292 214 KRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQD 258 (269)
Q Consensus 214 ~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G 258 (269)
|..+.++..+..++.+... ..+...++ ....|-+.|
T Consensus 230 --G~~~v~~g~D~~~l~~~~~--~~~~~~~~-----~~~~~~~~~ 265 (267)
T PRK10128 230 --GANFVAVGVDTMLYTDALD--QRLAMFKS-----GKNGPRAKG 265 (267)
T ss_pred --CCcEEEEChHHHHHHHHHH--HHHHHHhc-----cccCccccc
No 227
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=42.96 E-value=2.6e+02 Score=25.43 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024292 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~ 152 (269)
+.+++.+.++.+.+.|+..+..--.||- ...+.+.+++.++
T Consensus 132 ~~~~~~~ai~~lr~~g~~~v~iDli~Gl---------------------------------------Pgqt~~~~~~~l~ 172 (350)
T PRK08446 132 SQKQIIKAIENAKKAGFENISIDLIYDT---------------------------------------PLDNKKLLKEELK 172 (350)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeecCC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHHhCCCccceEEeecCCC----------CChHHHHHHHHHHHHcCCccEEEecCc
Q 024292 153 DSLFRLGLSSVELYQLHWAGI----------WGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (269)
Q Consensus 153 ~sL~~L~~dyiDl~~lH~p~~----------~~~~~~~~~L~~l~~~G~ir~iGvSn~ 200 (269)
..++ |+.++|.+|.+.--.. .+.++.++...+..++-=-..+++|||
T Consensus 173 ~~~~-l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~~yeis~f 229 (350)
T PRK08446 173 LAKE-LPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFKQYEISNF 229 (350)
T ss_pred HHHh-cCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCcEEEeehh
No 228
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=42.95 E-value=2.3e+02 Score=24.79 Aligned_cols=102 Identities=12% Similarity=-0.024 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEE
Q 024292 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~ 222 (269)
+.+.+.+...+. ..-|.|+||+-.=-.+ ....+.+...++.+++.-.+ -|-+-+++++.++++++.++ | .+-+|
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~~~~-~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~--G-~~iIN 96 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAGTAV-EEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAK--G-PPLIN 96 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCCCCc-hhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCC--C-CCEEE
Confidence 344555554443 3568999998643111 12234455556666554233 37888999999999987633 2 23333
Q ss_pred cccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 024292 223 QVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 223 Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~p 254 (269)
-+. ..... . ..+++.+++.|+.++++.-
T Consensus 97 sIs--~~~~~-~-~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 97 SVS--AEGEK-L-EVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred eCC--CCCcc-C-HHHHHHHHHhCCCEEEEec
Confidence 222 21111 1 1488999999999997653
No 229
>PRK05406 LamB/YcsF family protein; Provisional
Probab=42.94 E-value=1e+02 Score=26.90 Aligned_cols=74 Identities=20% Similarity=0.295 Sum_probs=51.7
Q ss_pred eecccccCCCCcCCCCCCChhhHHHHHHHHHHH-HHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEE
Q 024292 52 GVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTS-LDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVT 130 (269)
Q Consensus 52 glG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A-~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~ 130 (269)
+||.|.+|.. ++...+|..| +.+|+ +.|+ ...+-+.++-.. ...|-
T Consensus 13 ~fG~w~~g~D-------------~~lmp~IssANIACG~-------HAGD---------p~~M~~tv~lA~----~~gV~ 59 (246)
T PRK05406 13 SFGAWKMGDD-------------EALLPLVTSANIACGF-------HAGD---------PAVMRRTVRLAK----ENGVA 59 (246)
T ss_pred CCCCCCCCCH-------------HHHHHHhhhHHHhccc-------cCCC---------HHHHHHHHHHHH----HcCCe
Confidence 6888888764 7777777776 36666 5666 667777777654 36777
Q ss_pred EEecCCCC--------CCCCCHHHHHHHHHHHHHHh
Q 024292 131 VATKFAAL--------PWRLGRQSVLAALKDSLFRL 158 (269)
Q Consensus 131 I~tK~~~~--------~~~~~~~~i~~~l~~sL~~L 158 (269)
|...-+.. ....+++.+...+...+..|
T Consensus 60 IGAHPgypD~~gFGRR~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 60 IGAHPGYPDLEGFGRRNMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred EccCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 77776642 13467888888888777777
No 230
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=42.80 E-value=27 Score=34.61 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=33.3
Q ss_pred HHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCcc
Q 024292 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (269)
Q Consensus 153 ~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir 193 (269)
-.|+.||++ |++-+|+.|+.+.+.+..+|++|+..|-+.
T Consensus 413 L~Lkalgi~--d~l~F~f~d~P~~~~l~~AL~~L~~lgald 451 (674)
T KOG0922|consen 413 LQLKALGIN--DPLRFPFIDPPPPEALEEALEELYSLGALD 451 (674)
T ss_pred HHHHhcCCC--CcccCCCCCCCChHHHHHHHHHHHhcCccc
Confidence 358899998 999999999888899999999999776554
No 231
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.78 E-value=2.6e+02 Score=25.61 Aligned_cols=91 Identities=7% Similarity=-0.020 Sum_probs=60.3
Q ss_pred eEEeecCCC------------CChHHHHHHHHHHHHcCC----ccEEEec--CcCHHHHHHHHHHHHhcCCCeeEEcccC
Q 024292 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQGL----VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (269)
Q Consensus 165 l~~lH~p~~------------~~~~~~~~~L~~l~~~G~----ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~ 226 (269)
.+-||.++. ++.+++++++.+..++.. |+++=+. |.+.++++++.++++.. ...++-++|
T Consensus 206 aiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~--~~~VnLIPy 283 (343)
T PRK14468 206 ALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRGL--VSHVNLIPF 283 (343)
T ss_pred EEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhcC--CcEEEEEcC
Confidence 456777764 245788999987776643 3444444 55778888888887643 457777889
Q ss_pred CccCCC----cchh---hHHHHHHHcCCeEEEcccccC
Q 024292 227 SLIYRK----PEEN---GVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 227 s~~~~~----~~~~---~l~~~~~~~gi~via~~pl~~ 257 (269)
|+.... +..+ .+.+..+++|+.+....+.+.
T Consensus 284 np~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtiR~~~g~ 321 (343)
T PRK14468 284 NPWEGSPFQSSPRAQILAFADVLERRGVPVSVRWSRGR 321 (343)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 886531 2221 345566778999999887654
No 232
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=42.71 E-value=2.5e+02 Score=25.06 Aligned_cols=112 Identities=13% Similarity=0.008 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHHh---CCCccceEEeecCC---CCChHHHHH----HHHHHHHcCCccE-E--EecC-cCHHHHHH
Q 024292 142 LGRQSVLAALKDSLFRL---GLSSVELYQLHWAG---IWGNEGFID----GLGDAVEQGLVKA-V--GVSN-YSEKRLRN 207 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L---~~dyiDl~~lH~p~---~~~~~~~~~----~L~~l~~~G~ir~-i--GvSn-~~~~~l~~ 207 (269)
.+++.+.......+..+ |+-|+|+.+-.... ..+.+++++ ++.+.+++-.|+. + .+.. .+++.+++
T Consensus 65 ~t~e~l~~~~~~~~~e~~~~Gv~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~~r~~~~~~~~~ 144 (324)
T TIGR01430 65 RTEDDFKRLAYEYVEKAAKDGVVYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFGIKSRLILCGMRHKQPEAAEE 144 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCHHHHHH
Confidence 56777777777777554 88899977442211 133444444 5666555533442 2 2222 24677777
Q ss_pred HHHHHHhcCCCeeEEcccCCcc--CC-CcchhhHHHHHHHcCCeEEEccc
Q 024292 208 AYEKLKKRGIPLASNQVNYSLI--YR-KPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 208 ~~~~~~~~~~~~~~~Q~~~s~~--~~-~~~~~~l~~~~~~~gi~via~~p 254 (269)
.++.+...+.. .++.+....- .. ...-..+++.++++|+.+..+..
T Consensus 145 ~~~~~~~~~~~-~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~ 193 (324)
T TIGR01430 145 TLELAKPYKEQ-TIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAG 193 (324)
T ss_pred HHHHHHhhccC-cEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecC
Confidence 77765443211 1222222211 11 11112578889999998887764
No 233
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=42.63 E-value=1.4e+02 Score=22.84 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=42.8
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC--CccceEEeecCCC--CChHHHHHHHHHHHH
Q 024292 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL--SSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (269)
Q Consensus 126 R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~--dyiDl~~lH~p~~--~~~~~~~~~L~~l~~ 188 (269)
|=-+.|+-|++. ....+..+++.+.+.++.... +..|++++..+.. .+..++.+.|.+|.+
T Consensus 45 R~G~~VsKK~~~--~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~ 109 (120)
T PRK04390 45 RLGLVVGKKTAK--RAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMA 109 (120)
T ss_pred eEEEEEecccCc--chhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 667788888542 346788899999998876542 3569999998864 455666666666544
No 234
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=42.28 E-value=2.2e+02 Score=26.29 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCC--
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP-- 218 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~-- 218 (269)
..+++.+++-+.+.|.+.|++.-| -++..+..-.+ -..|+.+|...++..+++..+..++.
T Consensus 5 ~~~~e~L~~~~~~vl~~~G~~ee~---------------A~~vA~~lv~a--d~~G~~SHGv~r~p~yi~~l~~G~i~~~ 67 (349)
T COG2055 5 KVSAEELKALIEEVLRKAGVPEED---------------ARAVADVLVAA--DLRGVDSHGVGRLPGYVRRLKAGKINPD 67 (349)
T ss_pred EecHHHHHHHHHHHHHHcCCCHHH---------------HHHHHHHHHHH--HhcCCcccchHHHHHHHHHHHcCCcCCC
Confidence 467899999999999999985422 22222222221 23688899999999998887765543
Q ss_pred --eeEEcccCCccCCCc-----------chhhHHHHHHHcCCeEEEc
Q 024292 219 --LASNQVNYSLIYRKP-----------EENGVKAACDELGITLIAY 252 (269)
Q Consensus 219 --~~~~Q~~~s~~~~~~-----------~~~~l~~~~~~~gi~via~ 252 (269)
|.+++..=+..--+. ....+++.|+++||++++-
T Consensus 68 a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~vav 114 (349)
T COG2055 68 AEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVAV 114 (349)
T ss_pred CceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEEE
Confidence 344432222111110 0025899999999999874
No 235
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=42.21 E-value=1.8e+02 Score=30.52 Aligned_cols=109 Identities=14% Similarity=0.025 Sum_probs=61.0
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHh-CCCccceEEeecCCCCC--hHH---HHHHH
Q 024292 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL-GLSSVELYQLHWAGIWG--NEG---FIDGL 183 (269)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L-~~dyiDl~~lH~p~~~~--~~~---~~~~L 183 (269)
|+.|-++|+....+.+.+-++|.|=+.. ..--+.+..-+++.-++. ...-+.++.++.|+... ..+ ++++|
T Consensus 556 ~~~L~~~I~~~~~~~~p~~I~V~tTc~~---eiIGDDi~~vi~~~~~~~~~~~~~pvi~v~tpgF~Gs~~~G~~~a~~ai 632 (917)
T PRK14477 556 WENLKQGILRVIEKFKPKVIGVMTTGLT---ETMGDDVRSAIVQFREEHPELDDVPVVWASTPDYCGSLQEGYAAAVEAI 632 (917)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCchH---hhhhcCHHHHHHHHHhhccccCCCeEEEeeCCCCccCHHHHHHHHHHHH
Confidence 7777788877543322456777776632 222222333333222221 01236899999988632 233 33333
Q ss_pred H-HHH-----HcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeE
Q 024292 184 G-DAV-----EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 184 ~-~l~-----~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 221 (269)
- ++. ..++|--||-++..+..++++.++++..|+.+.+
T Consensus 633 v~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v~~ 676 (917)
T PRK14477 633 VATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDPVV 676 (917)
T ss_pred HHHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCceEE
Confidence 2 222 2467888877776677778888888888876644
No 236
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=42.15 E-value=2.5e+02 Score=24.87 Aligned_cols=70 Identities=10% Similarity=0.113 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHH---hCCCccceEEeecCC--CCChHHHHHHHHHHHHcCCccEEEecCc----CHHHHHHHHHHH
Q 024292 142 LGRQSVLAALKDSLFR---LGLSSVELYQLHWAG--IWGNEGFIDGLGDAVEQGLVKAVGVSNY----SEKRLRNAYEKL 212 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~---L~~dyiDl~~lH~p~--~~~~~~~~~~L~~l~~~G~ir~iGvSn~----~~~~l~~~~~~~ 212 (269)
.+++.+.+.+.+..+. +|. .+.+..-+..+ ..+++.+.+..+++.+.| +..|.++.- .|.++.++++..
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~l~~~l 185 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGI-EVNIYLEDWSNGMRDSPDYVFQLVDFLSDLP-IKRIMLPDTLGILSPFETYTYISDM 185 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCC-EEEEEEEeCCCCCcCCHHHHHHHHHHHHHcC-CCEEEecCCCCCCCHHHHHHHHHHH
Confidence 3445444444444433 343 45666665332 245677777777777777 566777643 677777777665
Q ss_pred H
Q 024292 213 K 213 (269)
Q Consensus 213 ~ 213 (269)
+
T Consensus 186 ~ 186 (280)
T cd07945 186 V 186 (280)
T ss_pred H
Confidence 4
No 237
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=42.11 E-value=2.9e+02 Score=26.11 Aligned_cols=109 Identities=8% Similarity=0.020 Sum_probs=59.9
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----hHHHHHHHH
Q 024292 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (269)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~-----~~~~~~~L~ 184 (269)
|+.+-++|++...+.+.+=++|.|=+-..-.+-+.+.+-+.+++-... ..-+.++.+|.|+... .+.++++|-
T Consensus 76 ~~~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~--~~~~pvi~v~tpgf~g~~~~G~~~a~~al~ 153 (432)
T TIGR01285 76 DEHIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDIARVVRQFREKHPQ--HKGTAVVTVNTPDFKGSLEDGYAAAVESII 153 (432)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccccccCHHHHHHHHHhhccc--ccCCeEEEecCCCcCCchHHHHHHHHHHHH
Confidence 777788888765433245677777664311233344443333322111 1136788889887522 233444432
Q ss_pred -HHHH--------cCCccEEEecCcCHHHHHHHHHHHHhcCCCee
Q 024292 185 -DAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 185 -~l~~--------~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (269)
++.. .++|--||-++.++..++++.++.+..|+++.
T Consensus 154 ~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~~ 198 (432)
T TIGR01285 154 EAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKPI 198 (432)
T ss_pred HHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCceE
Confidence 2221 34577778777666667777777777777653
No 238
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=41.97 E-value=29 Score=32.59 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=29.3
Q ss_pred CCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCC--eeeccccc
Q 024292 44 SDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAEVY 98 (269)
Q Consensus 44 tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin--~~DTA~~Y 98 (269)
-|+...+|-||.-++|.. .|...+.. .--+.+.+++...+++|++ |+||+-.-
T Consensus 78 ~g~~~~~iiLGGDHLGP~-~w~~lpae-eAM~~A~~li~ayv~AGF~KIHLD~Sm~c 132 (424)
T PF08013_consen 78 VGFPRDRIILGGDHLGPN-PWQHLPAE-EAMAKAKELIRAYVEAGFTKIHLDCSMDC 132 (424)
T ss_dssp CT--GGGEEEEEEEESSC-CCTTSBHH-HHHHHHHHHHHHHHCTT--EEEE---C--
T ss_pred cCCchhhEEecCCCCCcc-cccCCCHH-HHHHHHHHHHHHHHHcCCceEeecCCCCC
Confidence 466777899999988763 35432111 1123478899999999999 88987543
No 239
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=41.83 E-value=1.6e+02 Score=28.19 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccE
Q 024292 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKA 194 (269)
Q Consensus 145 ~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~ 194 (269)
+...+.+.+.|++||++ .|.+. .--+....+.+.+.+.+|+++|.|-.
T Consensus 70 ~~~~~~~~~~l~~l~I~-~D~~~-~t~~~~~~~~v~~~~~~L~~~G~iY~ 117 (511)
T PRK11893 70 DRNSAAFKRLWEALNIS-YDDFI-RTTDPRHKEAVQEIFQRLLANGDIYL 117 (511)
T ss_pred HHHHHHHHHHHHHhCCC-cCCce-eCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 45667888999999997 67542 21121236788999999999998643
No 240
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=41.67 E-value=3e+02 Score=25.75 Aligned_cols=94 Identities=14% Similarity=0.155 Sum_probs=58.8
Q ss_pred HHhCCCccceEEeecCCC------CChHHHHHHHHHHHH-cCCccEEEec---CcCHHHHHHHHHHHHhcCCCeeEEccc
Q 024292 156 FRLGLSSVELYQLHWAGI------WGNEGFIDGLGDAVE-QGLVKAVGVS---NYSEKRLRNAYEKLKKRGIPLASNQVN 225 (269)
Q Consensus 156 ~~L~~dyiDl~~lH~p~~------~~~~~~~~~L~~l~~-~G~ir~iGvS---n~~~~~l~~~~~~~~~~~~~~~~~Q~~ 225 (269)
+.++ +|++.||.-.. .+.++..+..++..+ .+.---|+=| ..+++.++++++.+... ++-++-..
T Consensus 150 ~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~--kpLL~SAt 224 (389)
T TIGR00381 150 KEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGE--RCLLASAN 224 (389)
T ss_pred HHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCC--CcEEEecC
Confidence 4555 58888886432 234577777777644 3433344434 45899999998876421 34443222
Q ss_pred CCccCCCcchhhHHHHHHHcCCeEEEcccccCCc
Q 024292 226 YSLIYRKPEENGVKAACDELGITLIAYCPIAQDS 259 (269)
Q Consensus 226 ~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G~ 259 (269)
... .. ..+.+.|+++|..+++++|..-|.
T Consensus 225 ~e~----Ny-~~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 225 LDL----DY-EKIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred chh----hH-HHHHHHHHHhCCeEEEEcCCcHHH
Confidence 211 11 259999999999999999876554
No 241
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=41.63 E-value=77 Score=23.93 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEc
Q 024292 202 EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (269)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~ 252 (269)
++.+.++++.+...|++-.++|.. .++.+++++|+++|+.++.=
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~g-------~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQPG-------AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-TT-------S--HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcc-------hHHHHHHHHHHHcCCEEEeC
Confidence 344444444444444455555544 22236999999999998853
No 242
>PRK12569 hypothetical protein; Provisional
Probab=41.52 E-value=1.2e+02 Score=26.54 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=52.5
Q ss_pred eecccccCCCCcCCCCCCChhhHHHHHHHHHHH-HHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEE
Q 024292 52 GVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTS-LDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVT 130 (269)
Q Consensus 52 glG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A-~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~ 130 (269)
+||.|.+|.. . .++...+|..| +.+|. +.|+ ...+-+.++-.. ...|-
T Consensus 14 sfG~~~~g~~----------~-D~~lmp~ItsaNIACG~-------HAGD---------p~~M~~tv~lA~----~~~V~ 62 (245)
T PRK12569 14 GFGPWRIGDG----------V-DEALMPLISSANIATGF-------HAGD---------PNIMRRTVELAK----AHGVG 62 (245)
T ss_pred CCCCcCCCCc----------c-HHHHHHHhhhHHHhccc-------cCCC---------HHHHHHHHHHHH----HcCCE
Confidence 7889988761 0 16777777776 46666 6676 777778777654 36777
Q ss_pred EEecCCCC--------CCCCCHHHHHHHHHHHHHHhC
Q 024292 131 VATKFAAL--------PWRLGRQSVLAALKDSLFRLG 159 (269)
Q Consensus 131 I~tK~~~~--------~~~~~~~~i~~~l~~sL~~L~ 159 (269)
|...-+.. ....+++.++..+...+..|+
T Consensus 63 IGAHPsyPD~~gFGRr~m~~s~~el~~~v~yQigaL~ 99 (245)
T PRK12569 63 IGAHPGFRDLVGFGRRHINASPQELVNDVLYQLGALR 99 (245)
T ss_pred eccCCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 77776542 134678888888887777773
No 243
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=41.28 E-value=4.1e+02 Score=27.15 Aligned_cols=109 Identities=8% Similarity=0.088 Sum_probs=56.5
Q ss_pred CcEEEEecCCCCCC---CCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-------CChHHHHHHHHHHHHcCCccEEE
Q 024292 127 VEVTVATKFAALPW---RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVG 196 (269)
Q Consensus 127 ~~v~I~tK~~~~~~---~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~-------~~~~~~~~~L~~l~~~G~ir~iG 196 (269)
+++.|..|+....+ ..+.+... .+-+-|+..|+|+||+ |.... ....-.....+++|+.=++--|+
T Consensus 617 ~~~~v~~ri~~~~~~~~g~~~~~~~-~~~~~l~~~g~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~ 692 (765)
T PRK08255 617 AEKPMSVRISAHDWVEGGNTPDDAV-EIARAFKAAGADLIDV---SSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIA 692 (765)
T ss_pred CCCeeEEEEccccccCCCCCHHHHH-HHHHHHHhcCCcEEEe---CCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEE
Confidence 57788899875322 23444433 3444567778777765 42111 01011122334556655566677
Q ss_pred ecCc-CHHHHHHHHHHHHhcCCCeeEEcccCC-ccCCCcchhhHHHHHHHcCCe
Q 024292 197 VSNY-SEKRLRNAYEKLKKRGIPLASNQVNYS-LIYRKPEENGVKAACDELGIT 248 (269)
Q Consensus 197 vSn~-~~~~l~~~~~~~~~~~~~~~~~Q~~~s-~~~~~~~~~~l~~~~~~~gi~ 248 (269)
+.+. +++.++++++. ...+.+.+-=. +.++ + =+...+++.++.
T Consensus 693 ~G~i~~~~~a~~~l~~-----g~~D~v~~gR~~l~dP--~--~~~~~~~~~~~~ 737 (765)
T PRK08255 693 VGAISEADHVNSIIAA-----GRADLCALARPHLADP--A--WTLHEAAEIGYR 737 (765)
T ss_pred eCCCCCHHHHHHHHHc-----CCcceeeEcHHHHhCc--c--HHHHHHHHcCCC
Confidence 7776 77778887654 23444433222 2222 1 155566666665
No 244
>PRK15108 biotin synthase; Provisional
Probab=41.07 E-value=2.7e+02 Score=25.39 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEee--cCCCCChHHHHHHHHHHHHcCCccEEEecC--cCHHHHHHHHH
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLH--WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN--YSEKRLRNAYE 210 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH--~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn--~~~~~l~~~~~ 210 (269)
.+++.|.+..+. ...+|...+ ..... .|.....+.+.+.++.+++.|. .+.+|+ .+.+.++++.+
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~Lke 144 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLAN 144 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHH
Confidence 456667666654 456777776 22332 2322345666666677776553 243444 35566666544
No 245
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=41.01 E-value=1.1e+02 Score=25.46 Aligned_cols=67 Identities=18% Similarity=0.056 Sum_probs=39.9
Q ss_pred HHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecC-cCHHHHHHHHHHHHhcCCCeeEEcccCCc
Q 024292 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~ 228 (269)
.+..+|.||+=+. ++|.. +..-..+...++.+.-..+.+||.- .+++.+.+.++. ..++++|++-+.
T Consensus 14 ~~~~~g~d~~Gfi--~~~~S-~R~v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~-----~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFI--FYPKS-PRYVSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEE-----LGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTC-TTB--HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHH-----CTESEEEE-SGG
T ss_pred HHHHcCCCEEeee--cCCCC-CCccCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHH-----cCCCEEEECCCC
Confidence 4557899998775 34432 2222344455555554455899764 477777777665 679999988654
No 246
>PRK09061 D-glutamate deacylase; Validated
Probab=40.84 E-value=3.3e+02 Score=26.25 Aligned_cols=13 Identities=8% Similarity=0.261 Sum_probs=6.1
Q ss_pred HHHHHHHcCCeEE
Q 024292 238 VKAACDELGITLI 250 (269)
Q Consensus 238 l~~~~~~~gi~vi 250 (269)
+++.+++.|+.|.
T Consensus 267 ~I~~Ar~~Gi~Vt 279 (509)
T PRK09061 267 LVEKAQAQGLDVT 279 (509)
T ss_pred HHHHHHHcCCcEE
Confidence 4444444444443
No 247
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=40.73 E-value=3.1e+02 Score=26.01 Aligned_cols=105 Identities=22% Similarity=0.177 Sum_probs=55.4
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----hHHHHHHHH
Q 024292 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (269)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~-----~~~~~~~L~ 184 (269)
|+.|-++|++...+.+.+-++|.|=+-. ..--+.+..-+++.-++.+ +.++.++.|.... ...++++|-
T Consensus 106 ~~kL~~~I~e~~~~~~P~~I~V~ttC~~---~lIGdDi~~v~~e~~~~~~---~~vi~v~t~gf~g~~~~G~~~a~~al~ 179 (456)
T TIGR01283 106 EKKLFHAIREIVERYHPPAVFVYSTCVP---GLIGDDLEAVCKAAAEKTG---IPVIPVDSEGFYGSKNLGNKLACDALL 179 (456)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCChH---HHhcCCHHHHHHHHHHHhC---CCEEEEECCCCccchhHHHHHHHHHHH
Confidence 7788888887654433466777776642 2222333333333323333 6788999877421 233444444
Q ss_pred HHHH-------------cCCccEEEecCcCHHHHHHHHHHHHhcCCCeeE
Q 024292 185 DAVE-------------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 185 ~l~~-------------~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 221 (269)
++.. .+.|--||-.+. +..+.++.++++..|+.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~VNiiG~~~~-~~d~~el~~lL~~~Gl~v~~ 228 (456)
T TIGR01283 180 KHVIGTREPEPIPVGTTVHDINLIGEFNV-AGEFWHVKPLLEKLGIRVLA 228 (456)
T ss_pred HHHhccCCcccccccCCCCcEEEEcCCCC-cccHHHHHHHHHHcCCeEEE
Confidence 3321 356777885443 22334444445566765543
No 248
>PRK15063 isocitrate lyase; Provisional
Probab=40.64 E-value=1.7e+02 Score=27.78 Aligned_cols=159 Identities=12% Similarity=0.024 Sum_probs=82.3
Q ss_pred cccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCee---eccc-ccCCCCCCCC--CchHHHHHHHHhhcc
Q 024292 48 VTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFF---DTAE-VYGSRASFGA--INSETLLGRFIKERK 121 (269)
Q Consensus 48 vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~---DTA~-~Yg~g~~~~~--~~sE~~lG~al~~~~ 121 (269)
+|.|.=+=..+|+. ..+.++++..+++|+--| |-.. .--+|...+. ...|+.+.+.-..+.
T Consensus 147 ~PIiADaDtGfGg~-------------~nv~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~ 213 (428)
T PRK15063 147 APIVADAEAGFGGV-------------LNAFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARL 213 (428)
T ss_pred CCeEEECCCCCCCc-------------HHHHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHH
Confidence 67666554555554 458889999999887533 5421 1112222221 233555544332211
Q ss_pred CC-CCCCcEEEEecCCCCC-----------------CCCC-------HHHHHHHHHHHHHHhCCCccceEEeecCCCCCh
Q 024292 122 QR-DPEVEVTVATKFAALP-----------------WRLG-------RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGN 176 (269)
Q Consensus 122 ~~-~~R~~v~I~tK~~~~~-----------------~~~~-------~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~ 176 (269)
.. ....+++|....-... ...+ ...+.++|++.+.-.. +-|+++++... .+.
T Consensus 214 A~d~~g~~~vIiARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~--GAD~iw~Et~~-~d~ 290 (428)
T PRK15063 214 AADVMGVPTLVIARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP--YADLIWCETST-PDL 290 (428)
T ss_pred HHHhcCCCeEEEEECCccccccccccccccccccccCCCccccccccccCHHHHHHHHHHHhc--CCCEEEeCCCC-CCH
Confidence 00 0012466666553210 0001 1236667777665443 99999999521 123
Q ss_pred HHHHHHHHHHHH--cCCccEEEec-------CcCHHHHHHHHHHHHhcCCCeeEE
Q 024292 177 EGFIDGLGDAVE--QGLVKAVGVS-------NYSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 177 ~~~~~~L~~l~~--~G~ir~iGvS-------n~~~~~l~~~~~~~~~~~~~~~~~ 222 (269)
+++-+..+.+.. -+++-.+|.| +++.++|+.+.+-+.+.|+.+.++
T Consensus 291 ee~~~fa~~v~~~~P~~~layn~sPsfnW~~~~~~~~~~~f~~eL~~~Gy~~~~~ 345 (428)
T PRK15063 291 EEARRFAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFI 345 (428)
T ss_pred HHHHHHHHhhcccCccceeecCCCCCcccccccCHHHHHHHHHHHHHcCceEEEe
Confidence 333333334333 3556666755 235788888877777777665543
No 249
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=40.63 E-value=2.8e+02 Score=25.12 Aligned_cols=134 Identities=16% Similarity=0.100 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHH-CCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024292 74 MKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 74 ~~~~~~~l~~A~~-~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~ 152 (269)
.++..++++..-+ .|++-+--+- |.+- -.....+.+.++.......-..+-|.|+.. ...+..+.+.+-
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsG--GDPL----l~~d~~L~~ll~~L~~i~~~~~IRi~tr~~----~~~P~rit~el~ 213 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISG--GDPL----MAKDHELEWLLKRLEEIPHLVRLRIGTRLP----VVIPQRITDELC 213 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEEC--Cccc----cCCHHHHHHHHHHHHhcCCccEEEeecCCC----ccCchhcCHHHH
Confidence 4667777776554 4777553221 2211 112333444444332110124566788762 233455556666
Q ss_pred HHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEe-----cCcCHHHHHHHHHHHHhcCCC
Q 024292 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGV-----SNYSEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 153 ~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGv-----Sn~~~~~l~~~~~~~~~~~~~ 218 (269)
+.|++.+...+.+..+-.|. .-.+++.++++.|++.|..-.+=. -|.+++.+.++.+.+...|+.
T Consensus 214 ~~L~~~~~~~~~vsh~nh~~-Ei~~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~ 283 (331)
T TIGR00238 214 ELLASFELQLMLVTHINHCN-EITEEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGII 283 (331)
T ss_pred HHHHhcCCcEEEEccCCChH-hCCHHHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCee
Confidence 67777776544333222221 235789999999999995322211 144678888888877766753
No 250
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=40.61 E-value=2.6e+02 Score=24.77 Aligned_cols=142 Identities=17% Similarity=0.169 Sum_probs=85.1
Q ss_pred HHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH-HH
Q 024292 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD-SL 155 (269)
Q Consensus 77 ~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~-sL 155 (269)
..++-....+.|+|..|....-... .+.++...-+.......+.+.+++.++. .-
T Consensus 14 VA~Vt~~La~~g~NI~d~sq~~~~~------------------------~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~ 69 (280)
T TIGR00655 14 VAAISTFIAKHGANIISNDQHTDPE------------------------TGRFFMRVEFQLEGFRLEESSLLAAFKSALA 69 (280)
T ss_pred HHHHHHHHHHCCCCEEeeeEEEcCC------------------------CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3444455669999999976554320 1334433333221123578888888888 88
Q ss_pred HHhCCCccceEEeecCCC--------CChHHHHHHHHHHHHcCCc--cEE-EecCcCHHHHHHHHHHHHhcCCCeeEEcc
Q 024292 156 FRLGLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQGLV--KAV-GVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 156 ~~L~~dyiDl~~lH~p~~--------~~~~~~~~~L~~l~~~G~i--r~i-GvSn~~~~~l~~~~~~~~~~~~~~~~~Q~ 224 (269)
+.++++ +.+|..+. -.....+++|-+..++|.. .-. =+||++. +.. .|++.++|+.+...
T Consensus 70 ~~~~l~----i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~~--~~~---~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 70 EKFEMT----WELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHED--LRS---LVERFGIPFHYIPA 140 (280)
T ss_pred HHhCCE----EEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcChh--HHH---HHHHhCCCEEEcCC
Confidence 888875 46666543 1245678888888888864 322 3577642 222 36667777655443
Q ss_pred cCCccCCCcchhhHHHHHHHcCCeEEEcc
Q 024292 225 NYSLIYRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 225 ~~s~~~~~~~~~~l~~~~~~~gi~via~~ 253 (269)
.. .++...+..+++..++.++-++.-.
T Consensus 141 ~~--~~~~~~e~~~~~~l~~~~~Dlivla 167 (280)
T TIGR00655 141 TK--DNRVEHEKRQLELLKQYQVDLVVLA 167 (280)
T ss_pred CC--cchhhhHHHHHHHHHHhCCCEEEEe
Confidence 22 2333333358999999988887644
No 251
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=40.49 E-value=73 Score=23.87 Aligned_cols=71 Identities=25% Similarity=0.182 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCC-CCC-------------
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFA-ALP------------- 139 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~-~~~------------- 139 (269)
.....+..--.++.|.-|+-|-..|.-|+ |-++---|-+.+ +++++++|+. ..|
T Consensus 19 ~a~LYsaYMpfl~nGglFVpTnk~y~iG~-------evfl~l~lld~p-----ekl~vagkVaWitP~gt~sr~~GiGv~ 86 (117)
T COG3215 19 MALLYSAYMPFLENGGLFVPTNKVYSIGE-------EVFLLLELLDFP-----EKLPVAGKVAWITPVGTQSRPAGIGVQ 86 (117)
T ss_pred HHHHHHHHhHHHhcCcEEcccCCccccch-------hhhhhhhhcCch-----hhccccceEEEEccCCCCCCCCceeee
Confidence 34455555566799999999999998875 665544444443 7889999974 111
Q ss_pred --CCCCHHHHHHHHHHHHH
Q 024292 140 --WRLGRQSVLAALKDSLF 156 (269)
Q Consensus 140 --~~~~~~~i~~~l~~sL~ 156 (269)
.+-.-..+++++|.-|.
T Consensus 87 f~d~e~g~~vr~~IE~~Lg 105 (117)
T COG3215 87 FTDGENGLKVRNQIETLLG 105 (117)
T ss_pred ccCCCchhhHHHHHHHHHH
Confidence 11122467888887774
No 252
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=40.33 E-value=1.4e+02 Score=28.25 Aligned_cols=74 Identities=14% Similarity=0.194 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCcc-----EEEecCcCH------HHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCe
Q 024292 180 IDGLGDAVEQGLVK-----AVGVSNYSE------KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (269)
Q Consensus 180 ~~~L~~l~~~G~ir-----~iGvSn~~~------~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~ 248 (269)
++.|.+|.++|+|. +++...... ..-.++.+.++..++.-.+.-..+-..+|... -+....++.||+
T Consensus 289 lD~LreLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga--~m~keiE~~GIP 366 (431)
T TIGR01917 289 VDVLRDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGA--TMVKEIERAGIP 366 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHH--HHHHHHHHcCCC
Confidence 78999999999996 555554321 22334444455566655554445555555444 277778888999
Q ss_pred EEEcccc
Q 024292 249 LIAYCPI 255 (269)
Q Consensus 249 via~~pl 255 (269)
++.+..+
T Consensus 367 vV~i~~~ 373 (431)
T TIGR01917 367 VVHICTV 373 (431)
T ss_pred EEEEeec
Confidence 9877654
No 253
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=40.30 E-value=2.4e+02 Score=26.47 Aligned_cols=81 Identities=12% Similarity=0.052 Sum_probs=50.8
Q ss_pred cceEEeecCCCCChHHHHHHHHHHHHcC--CccEEE-e-cCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhH
Q 024292 163 VELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVG-V-SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGV 238 (269)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~L~~l~~~G--~ir~iG-v-Sn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l 238 (269)
.+++++-.|-+... |+.+.+|.+.- .+.-+| = ..+++..+.++++. ...+++|+..+-+-.-.+..++
T Consensus 277 ~~i~~iEdPl~~~D---~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~-----~a~d~v~ik~~~iGGite~~~i 348 (408)
T cd03313 277 YPIVSIEDPFDEDD---WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEK-----KAANALLIKVNQIGTLTETIEA 348 (408)
T ss_pred CCcEEEEeCCCCcC---HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHh-----CCCCEEEEcccccCCHHHHHHH
Confidence 46888887754222 66666666662 444333 2 23478888888764 2467777776654432333358
Q ss_pred HHHHHHcCCeEEE
Q 024292 239 KAACDELGITLIA 251 (269)
Q Consensus 239 ~~~~~~~gi~via 251 (269)
..+|+++|+.++.
T Consensus 349 a~lA~~~G~~~~~ 361 (408)
T cd03313 349 IKLAKKNGYGVVV 361 (408)
T ss_pred HHHHHHcCCeEEc
Confidence 8999999999865
No 254
>TIGR00035 asp_race aspartate racemase.
Probab=40.11 E-value=1.5e+02 Score=25.16 Aligned_cols=62 Identities=6% Similarity=-0.092 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-------------hHHHHHHHHHHHHcCCccEEEecCcCHHH
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-------------NEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~-------------~~~~~~~L~~l~~~G~ir~iGvSn~~~~~ 204 (269)
-+-+.+++-++..-.+.+-|+++++.+++|+..+ ...+.+.++.|.+.| +..|-+++.+...
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 3455666666666677888999999999986411 234566666666654 7999998887655
No 255
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=39.73 E-value=1.9e+02 Score=25.10 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecC-CC---CChHHHHHHHHHHHHc--CC-ccEEEecCcCHHHHHHHHHHHH
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWA-GI---WGNEGFIDGLGDAVEQ--GL-VKAVGVSNYSEKRLRNAYEKLK 213 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p-~~---~~~~~~~~~L~~l~~~--G~-ir~iGvSn~~~~~l~~~~~~~~ 213 (269)
..+.+.+++.++..++. |++- +++-.- .. ...+|-.+.++..++. |+ --..|++..+.....+..+.++
T Consensus 14 ~iD~~~~~~~i~~l~~~-Gv~g---i~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~ 89 (281)
T cd00408 14 EVDLDALRRLVEFLIEA-GVDG---LVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAE 89 (281)
T ss_pred CcCHHHHHHHHHHHHHc-CCCE---EEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHH
Confidence 46778788877766664 6544 443321 11 3455555555555443 33 3368888888777777777788
Q ss_pred hcCCCeeEEcccCCccCCCcchhhHHHHHH----HcCCeEEEcccc-cCCc
Q 024292 214 KRGIPLASNQVNYSLIYRKPEENGVKAACD----ELGITLIAYCPI-AQDS 259 (269)
Q Consensus 214 ~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~----~~gi~via~~pl-~~G~ 259 (269)
..|..-.++..+|... .. +++++++.+ .-+++++.|..- ..|.
T Consensus 90 ~~Gad~v~v~pP~y~~-~~--~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~ 137 (281)
T cd00408 90 EAGADGVLVVPPYYNK-PS--QEGIVAHFKAVADASDLPVILYNIPGRTGV 137 (281)
T ss_pred HcCCCEEEECCCcCCC-CC--HHHHHHHHHHHHhcCCCCEEEEECccccCC
Confidence 8887655555554322 12 224555544 358999888543 3354
No 256
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=39.51 E-value=1.4e+02 Score=28.75 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHhcC
Q 024292 201 SEKRLRNAYEKLKKRG 216 (269)
Q Consensus 201 ~~~~l~~~~~~~~~~~ 216 (269)
+...+...++.+++.|
T Consensus 120 d~~n~~~~i~~ak~~G 135 (467)
T PRK14041 120 DIRNLEKSIEVAKKHG 135 (467)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 3455555555555554
No 257
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=39.14 E-value=2.7e+02 Score=24.45 Aligned_cols=131 Identities=8% Similarity=0.025 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccC-------CCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCC-CCCCCH
Q 024292 73 KMKAAKAAFDTSLDNGITFFDTAEVYG-------SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL-PWRLGR 144 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg-------~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~-~~~~~~ 144 (269)
+.++..++.....+.|+..||....-. .+.. -++.+.++.+..+ +.++...+..-.. .+..-|
T Consensus 19 ~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~-----~~e~i~~~~~~~~----~~~l~~~~r~~~~~~~~~~p 89 (275)
T cd07937 19 RTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNED-----PWERLRELRKAMP----NTPLQMLLRGQNLVGYRHYP 89 (275)
T ss_pred cHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCC-----HHHHHHHHHHhCC----CCceehhcccccccCccCCC
Confidence 347777788888899999999863110 1111 1455544443322 2344333321100 011123
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEe-----cCcCHHHHHHHHHHHHhcC
Q 024292 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGV-----SNYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 145 ~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGv-----Sn~~~~~l~~~~~~~~~~~ 216 (269)
..+.+..-+.....|.|.|-++. |. .+.+.+.+..+..++.|+.-...+ +.++++.+.++.+.+...|
T Consensus 90 ~~~~~~di~~~~~~g~~~iri~~---~~-~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G 162 (275)
T cd07937 90 DDVVELFVEKAAKNGIDIFRIFD---AL-NDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMG 162 (275)
T ss_pred cHHHHHHHHHHHHcCCCEEEEee---cC-ChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC
Confidence 33322222223344555544422 11 235667777788888886433344 3567777777777666555
No 258
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=38.95 E-value=3.4e+02 Score=25.75 Aligned_cols=111 Identities=10% Similarity=-0.009 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CChHHHHHHHHHHHHcCCccEEEecCcC---HHHHHHHHHHHHhc
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYS---EKRLRNAYEKLKKR 215 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~G~ir~iGvSn~~---~~~l~~~~~~~~~~ 215 (269)
.++++.+.+.+++....+. .++.+.|-.|.. ...+.+++.|..++++..=..+.+++.. ++.++++.+.
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~---- 132 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDL---- 132 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHC----
Confidence 4677888888877766552 345666666433 2346688888888887211357777653 5666666442
Q ss_pred CCCeeEEcccCCccCCCcc------------------h--------hhHHHHHHHcCCeEEEcccccCCc
Q 024292 216 GIPLASNQVNYSLIYRKPE------------------E--------NGVKAACDELGITLIAYCPIAQDS 259 (269)
Q Consensus 216 ~~~~~~~Q~~~s~~~~~~~------------------~--------~~l~~~~~~~gi~via~~pl~~G~ 259 (269)
+ ++.+.+.++-+++... . ..-++.+.+.|+.+....++--|+
T Consensus 133 g--vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpGi 200 (442)
T TIGR01290 133 G--VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPGI 200 (442)
T ss_pred C--CCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCc
Confidence 2 3344444443322110 0 012455677888888878877665
No 259
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=38.91 E-value=2.9e+02 Score=24.85 Aligned_cols=128 Identities=12% Similarity=0.095 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHH---
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL--- 148 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~--- 148 (269)
.+.++..+.++.+.+.|++.|-.......... ...+-+.++....+. ..+ ++ +.+++..+.
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~------~~~~~~li~~Ik~~~--~~i----~~----~~~s~~ei~~~~ 135 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLG------LDYYEDLFRAIKARF--PHI----HI----HSFSPVEIVYIA 135 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCC------HHHHHHHHHHHHHHC--CCc----CC----CCCCHHHHHHHh
Confidence 46688888999999999988765422111111 223333344332000 011 11 112332221
Q ss_pred -------HHHHHHHHHhCCCccceE--E-e-----ec--CCCCChHHHHHHHHHHHHcCCccE----EEecCcCHHHHHH
Q 024292 149 -------AALKDSLFRLGLSSVELY--Q-L-----HW--AGIWGNEGFIDGLGDAVEQGLVKA----VGVSNYSEKRLRN 207 (269)
Q Consensus 149 -------~~l~~sL~~L~~dyiDl~--~-l-----H~--p~~~~~~~~~~~L~~l~~~G~ir~----iGvSn~~~~~l~~ 207 (269)
+..-+.|++.|++.++.. - + +. |...+.++.+++++.+++.|.--. +|+ ..+.+++.+
T Consensus 136 ~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~ 214 (340)
T TIGR03699 136 KKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIE 214 (340)
T ss_pred ccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHH
Confidence 344456677788877632 1 1 11 111356788999999999995332 344 557777777
Q ss_pred HHHHHHhcC
Q 024292 208 AYEKLKKRG 216 (269)
Q Consensus 208 ~~~~~~~~~ 216 (269)
.+..+++.+
T Consensus 215 ~l~~l~~l~ 223 (340)
T TIGR03699 215 HLERIRELQ 223 (340)
T ss_pred HHHHHHHhc
Confidence 666666554
No 260
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=38.90 E-value=3.3e+02 Score=25.93 Aligned_cols=114 Identities=21% Similarity=0.297 Sum_probs=59.8
Q ss_pred ecccccCCCCCCCCCchHHHHHHHHhhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecC
Q 024292 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWA 171 (269)
Q Consensus 93 DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R-~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p 171 (269)
+..-.||. |+.|-++|++...+.|+ +-++|.|=+-. ..--+.+..-+++.-++. .-++++.+|.|
T Consensus 103 E~d~VfGg---------~~kL~~aI~~~~~~~~~p~~I~V~tTC~~---elIGDDi~~v~~~~~~~~--~~~~vi~v~tp 168 (461)
T TIGR01860 103 ESHVVFGG---------EKQLEKSIHEAFDEFPDIKRMIVYTTCPT---ALIGDDIKAVAKKVQKEL--PDVDIFTVECP 168 (461)
T ss_pred CCceeeCc---------HHHHHHHHHHHHHhCCCCCEEEEEccCch---hhhcCCHHHHHHHHHHhc--CCCcEEEEeCC
Confidence 33456775 78888888876544332 44777775432 222233333333322232 12689999998
Q ss_pred CCCC---hHH---HHHHH-HHHH--------HcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeE
Q 024292 172 GIWG---NEG---FIDGL-GDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 172 ~~~~---~~~---~~~~L-~~l~--------~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 221 (269)
+..+ ..+ ..+++ +++. ..+.|--||-.++ +..+.++.++.+..|+++.+
T Consensus 169 gf~g~s~~~G~~~a~~~~~~~~v~~~~~~~~~~~~VNiiG~~~~-~gd~~el~~lL~~~Gi~v~~ 232 (461)
T TIGR01860 169 GFAGVSQSKGHHVLNIGWINEKVGTLEPEITSEYTINVIGDYNI-QGDTQVLQKYWDKMGIQVIA 232 (461)
T ss_pred CcCCcccchHHHHHHHHHHHHHhcccCCCCCCCCcEEEECCCCC-cccHHHHHHHHHHcCCcEEE
Confidence 7532 112 22221 2221 2467888884443 33455555556677776643
No 261
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.90 E-value=2.4e+02 Score=23.81 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhCCCc--cceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeE
Q 024292 144 RQSVLAALKDSLFRLGLSS--VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 144 ~~~i~~~l~~sL~~L~~dy--iDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 221 (269)
...+.+.+++.+++++..+ +++++.... .+.+...+.++.+... ++..|=+...+...+...++.+...++|+..
T Consensus 14 ~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~-~vDgiii~~~~~~~~~~~i~~~~~~gIpvV~ 90 (274)
T cd06311 14 TAGIVWHAQAAAKKLEAAYPDVEFILVTAS--NDTEQQNAQQDLLINR-KIDALVILPFESAPLTQPVAKAKKAGIFVVV 90 (274)
T ss_pred HHHHHHHHHHHHHHhhhhCCCeEEEEEcCC--CCHHHHHHHHHHHHHc-CCCEEEEeCCCchhhHHHHHHHHHCCCeEEE
Confidence 3556677777777776433 344443221 2233444444545554 3566666555444444444444455555433
No 262
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=38.54 E-value=2.9e+02 Score=26.11 Aligned_cols=103 Identities=16% Similarity=0.234 Sum_probs=69.5
Q ss_pred HHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC
Q 024292 80 AFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG 159 (269)
Q Consensus 80 ~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~ 159 (269)
.++++++.|- +-..-.||++-. --..+.+.|..... -.+.-.+- ...+.+.+++.++++.+.++
T Consensus 38 ~lrr~v~~~~--l~SmIl~GPPG~-----GKTTlA~liA~~~~----~~f~~~sA-----v~~gvkdlr~i~e~a~~~~~ 101 (436)
T COG2256 38 PLRRAVEAGH--LHSMILWGPPGT-----GKTTLARLIAGTTN----AAFEALSA-----VTSGVKDLREIIEEARKNRL 101 (436)
T ss_pred hHHHHHhcCC--CceeEEECCCCC-----CHHHHHHHHHHhhC----CceEEecc-----ccccHHHHHHHHHHHHHHHh
Confidence 6888888764 334447876322 27788888887642 23322222 24567889999999988877
Q ss_pred CCccceEEe---ecCCCCChHHHHHHHHHHHHcCCccEEEecCcCH
Q 024292 160 LSSVELYQL---HWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (269)
Q Consensus 160 ~dyiDl~~l---H~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~ 202 (269)
...==++++ |+.+ ...-++|.-.++.|.|-.||-++-+|
T Consensus 102 ~gr~tiLflDEIHRfn----K~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 102 LGRRTILFLDEIHRFN----KAQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred cCCceEEEEehhhhcC----hhhhhhhhhhhcCCeEEEEeccCCCC
Confidence 544445655 5544 45567888899999999999987654
No 263
>PLN02224 methionine-tRNA ligase
Probab=38.27 E-value=1.9e+02 Score=28.87 Aligned_cols=103 Identities=9% Similarity=-0.020 Sum_probs=57.8
Q ss_pred HCCCCeeecccccCCCCCC-CCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCC---------CCCCH----HHHHHHH
Q 024292 86 DNGITFFDTAEVYGSRASF-GAINSETLLGRFIKERKQRDPEVEVTVATKFAALP---------WRLGR----QSVLAAL 151 (269)
Q Consensus 86 ~~Gin~~DTA~~Yg~g~~~-~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~---------~~~~~----~~i~~~l 151 (269)
+...-+|+|+..|.+|.-+ |+.. ..++.+.+.+..+-. =.+++..+=+-... .+.++ +.+...+
T Consensus 67 ~~~~~~ittp~pY~NG~~HiGHa~-~~~~aDviaR~~r~~-G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~ 144 (616)
T PLN02224 67 EADTFVLTTPLYYVNAPPHMGSAY-TTIAADSIARFQRLL-GKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSY 144 (616)
T ss_pred CCCeEEEeCCCCCCCCCCchhccH-HHHHHHHHHHHHHhc-CCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3444589999999998653 2222 345555555432110 03455554442100 11222 2334566
Q ss_pred HHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCc
Q 024292 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV 192 (269)
Q Consensus 152 ~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~i 192 (269)
.+.+++|++++ |.+.- -.++.-.+.+.+.+.+|.++|.|
T Consensus 145 ~~~~~~l~I~~-D~f~r-Tt~~~h~~~vq~~f~~L~~~G~I 183 (616)
T PLN02224 145 RTLWKDLDIAY-DKFIR-TTDPKHEAIVKEFYARVFANGDI 183 (616)
T ss_pred HHHHHHcCCCC-CcCee-CCCHHHHHHHHHHHHHHHHCCCE
Confidence 78889999865 64432 11222356788899999999987
No 264
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=38.19 E-value=1.5e+02 Score=28.32 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcC
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~ 216 (269)
.+.+...+.+.+.|+.||+++ |-++... .-.+.+-+++++|+++|++ |... .+++++++..+.+...+
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~~-De~y~QS---er~~~y~~~~e~L~e~G~A-Y~C~--Ct~eel~~~r~~~~~~~ 115 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGINW-DRTFRQS---DRFDRYDEAAEKLKAAGRL-YPCY--ETPEELELKRKIQLSRG 115 (445)
T ss_pred cchHHHHHHHHHHHHHcCCCC-CccccHH---HHHHHHHHHHHHHHHCCCE-EEec--CchHHHHHHHHHHHhCC
Confidence 445788899999999999984 7432211 1234668889999999985 4444 45677776655443334
No 265
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=37.85 E-value=77 Score=30.21 Aligned_cols=107 Identities=10% Similarity=-0.001 Sum_probs=67.0
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHH-HHH------HHHHH--HHHHhCCCccceEEeecCCCCChHHHH
Q 024292 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQ-SVL------AALKD--SLFRLGLSSVELYQLHWAGIWGNEGFI 180 (269)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~-~i~------~~l~~--sL~~L~~dyiDl~~lH~p~~~~~~~~~ 180 (269)
|.++.-+-+..+.. -+.+++|+.-+|......... .+. -.+++ .-+||.+.|+|.. ...+++.+
T Consensus 151 eT~~~~~r~h~~gd-L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~------a~~ldeAl 223 (561)
T COG2987 151 ETFAEAGRQHFGGD-LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI------AETLDEAL 223 (561)
T ss_pred HHHHHHHHHhcCCC-ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh------cCCHHHHH
Confidence 44443333333332 368999999988632111110 010 11222 2367889999932 14578999
Q ss_pred HHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEE--cccCC
Q 024292 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN--QVNYS 227 (269)
Q Consensus 181 ~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~--Q~~~s 227 (269)
...++..++|+-.+||+-..-.+.++++++. ++.|+++ |...|
T Consensus 224 ~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r----~~~pD~vtDQTsaH 268 (561)
T COG2987 224 ALAEEATAAGEPISIGLLGNAAEILPELLRR----GIRPDLVTDQTSAH 268 (561)
T ss_pred HHHHHHHhcCCceEEEEeccHHHHHHHHHHc----CCCCceeccccccc
Confidence 9999999999999999998777777777553 5666665 55443
No 266
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=37.80 E-value=1.7e+02 Score=22.30 Aligned_cols=60 Identities=8% Similarity=0.072 Sum_probs=43.9
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC------ccceEEeecCCC--CChHHHHHHHHHHH
Q 024292 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS------SVELYQLHWAGI--WGNEGFIDGLGDAV 187 (269)
Q Consensus 126 R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d------yiDl~~lH~p~~--~~~~~~~~~L~~l~ 187 (269)
|=-+.|+-|++. ....+..+++.+.++++....+ ..|++++-.+.. .+..++.+.|+.|.
T Consensus 47 RlG~sVSKKv~~--kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNK--KAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCC--chhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 568889999643 3567889999999999887542 579999998764 44566666666553
No 267
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=37.68 E-value=2.9e+02 Score=24.34 Aligned_cols=135 Identities=10% Similarity=0.093 Sum_probs=70.1
Q ss_pred ChhhHHHHHHHHHHHHHC-CCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCC-----------
Q 024292 70 DDRKMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA----------- 137 (269)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~-Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~----------- 137 (269)
+.+|.+...+.++..++. |++-|=..-.-|-+.+-...+-++++-.+.+.... |-.+++.+-...
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~---~~~viagv~~~~~~~ai~~a~~a 92 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKG---KVTLIAHVGSLNLKESQELAKHA 92 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC---CCeEEeccCCCCHHHHHHHHHHH
Confidence 346778888888999888 88876433222221110000223344444443321 223333222110
Q ss_pred -----------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHH
Q 024292 138 -----------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (269)
Q Consensus 138 -----------~~--~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~ 204 (269)
.| +..+.+.+.+-+++..+... -+.+++-+.|......=..+.+.+|.+...|..|=.|+.+...
T Consensus 93 ~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~--~lpi~iYn~P~~tg~~l~~~~~~~L~~~pnivgiK~s~~d~~~ 170 (288)
T cd00954 93 EELGYDAISAITPFYYKFSFEEIKDYYREIIAAAA--SLPMIIYHIPALTGVNLTLEQFLELFEIPNVIGVKFTATDLYD 170 (288)
T ss_pred HHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcC--CCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCCCCHHH
Confidence 11 22456777777777777651 2577777777643333234455555555666666666666665
Q ss_pred HHHHH
Q 024292 205 LRNAY 209 (269)
Q Consensus 205 l~~~~ 209 (269)
+.++.
T Consensus 171 ~~~~~ 175 (288)
T cd00954 171 LERIR 175 (288)
T ss_pred HHHHH
Confidence 55554
No 268
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=37.62 E-value=1.7e+02 Score=25.00 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccc
Q 024292 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPI 255 (269)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl 255 (269)
++.++.++.+.++..++++.+....++. .-+-..+++.|+.++.-.||
T Consensus 184 s~~~l~~l~~~ik~~~v~~i~~e~~~~~-------~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 184 SPKDLAELIKLIKENKVKCIFTEPQFSS-------KLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEETTS-T-------HHHHHHHHCCT-EEEESSTT
T ss_pred CHHHHHHHHHHhhhcCCcEEEecCCCCh-------HHHHHHHHHcCCcEEEeCCC
Confidence 6777888877777777666555433321 12444467778888888888
No 269
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=37.59 E-value=2.2e+02 Score=27.38 Aligned_cols=109 Identities=7% Similarity=0.030 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CChHHHHHHHHHHHHcC-CccEEEecCc-C-HHHHHHHHHHHHhcCC
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQG-LVKAVGVSNY-S-EKRLRNAYEKLKKRGI 217 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L~~l~~~G-~ir~iGvSn~-~-~~~l~~~~~~~~~~~~ 217 (269)
.+++.+.+.++...++.|+.+ +.+...+. .+.+.+.+.++++++.| .-..++++.- + ...-+++++..++.|+
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~---~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~ 298 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGF---FILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGL 298 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCE---EEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCC
Confidence 367788888888777777544 33333332 34456677778888887 3234444321 1 1001223333344453
Q ss_pred CeeEEccc--------CCccCCCc---chhhHHHHHHHcCCeEEEcccc
Q 024292 218 PLASNQVN--------YSLIYRKP---EENGVKAACDELGITLIAYCPI 255 (269)
Q Consensus 218 ~~~~~Q~~--------~s~~~~~~---~~~~l~~~~~~~gi~via~~pl 255 (269)
. .+++. ...+.... ...+.++.|+++||.+.+.--+
T Consensus 299 ~--~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 299 V--HISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred c--EEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 2 22111 11222211 1125788889999887654444
No 270
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.50 E-value=2.5e+02 Score=28.40 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=64.0
Q ss_pred ChhhHHHHHHHHHHHHHCCCCeeecc--cccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEe--cCCCCCCCCC--
Q 024292 70 DDRKMKAAKAAFDTSLDNGITFFDTA--EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVAT--KFAALPWRLG-- 143 (269)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA--~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~t--K~~~~~~~~~-- 143 (269)
.+.|.++..+.+....+.|+.-|=.+ ..|-|+.. |..+++.+++.. .++-|++ ++++....+.
T Consensus 134 ~~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~H------E~~v~eiire~~-----~~i~V~~shev~p~~~~~eR~ 202 (674)
T COG0145 134 KPLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEH------ELRVAEIIREIG-----PDIPVSLSHEVSPEIGEYERA 202 (674)
T ss_pred CcCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHH------HHHHHHHHHHhc-----CCceEEechhcchhcCcccch
Confidence 35788999999999999999977654 45666665 999999999986 4666776 7775211111
Q ss_pred ------------HHHHHHHHHHHHHHhCCCccceEEeecCC
Q 024292 144 ------------RQSVLAALKDSLFRLGLSSVELYQLHWAG 172 (269)
Q Consensus 144 ------------~~~i~~~l~~sL~~L~~dyiDl~~lH~p~ 172 (269)
-....++++..|+.-|.+ .+++++-+..
T Consensus 203 ~TavlnA~L~pi~~~yl~~v~~~l~~~g~~-~~l~~m~sdG 242 (674)
T COG0145 203 NTAVLNAYLSPILRRYLEAVKDALKERGIK-ARLMVMQSDG 242 (674)
T ss_pred hhheeeeeehHHHHHHHHHHHHHHHhcCCC-ceeEEEecCC
Confidence 134556677777777765 5788777643
No 271
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.50 E-value=1.7e+02 Score=27.00 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=75.9
Q ss_pred HHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHh
Q 024292 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL 158 (269)
Q Consensus 79 ~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L 158 (269)
+..+..-+.||+|+-++-.-.|- ..+++..|+.... +-++|--- ++.+.-.+.+ -++++
T Consensus 51 k~~k~~~~~girfV~e~it~~Ny--------k~vL~pll~~~~g----qgf~vnLS-----vd~~s~Dlmr----~crk~ 109 (481)
T COG5310 51 KDRKILDERGIRFVQEAITRDNY--------KDVLKPLLKGVGG----QGFCVNLS-----VDTSSLDLMR----LCRKH 109 (481)
T ss_pred HHHHHHHhhhhHHHHHhcChhhH--------HHHHHHHhhcCCC----ceEEEEeE-----eccchhHHHH----HHHHc
Confidence 44555668999999876443331 5577777776541 34444433 3444444444 45688
Q ss_pred CCCccceEEeecCCC-CC-----hHHHHHHHHHHHHcCCcc------EEEecCcCHHHHHH-----HHHHHHhcCCCeeE
Q 024292 159 GLSSVELYQLHWAGI-WG-----NEGFIDGLGDAVEQGLVK------AVGVSNYSEKRLRN-----AYEKLKKRGIPLAS 221 (269)
Q Consensus 159 ~~dyiDl~~lH~p~~-~~-----~~~~~~~L~~l~~~G~ir------~iGvSn~~~~~l~~-----~~~~~~~~~~~~~~ 221 (269)
++=|||-..=-|+.. ++ ....=-+|.+.+..-|-| ++-.|.-+|-.+.- ++++|...+..+..
T Consensus 110 ~vLYidTvVEpW~gfyfDa~adn~artnyaLRet~lrEk~r~pgg~TaVs~cGANPGmvswFVKqaLvdlAad~~ld~~e 189 (481)
T COG5310 110 GVLYIDTVVEPWLGFYFDAQADNAARTNYALRETVLREKRRNPGGPTAVSTCGANPGMVSWFVKQALVDLAADLGLDFEE 189 (481)
T ss_pred CeEEEeeeeccccccchhhhhhhhhhhhHHHHHHHHHHhccCCCCCeeeeecCCCchHHHHHHHHHHHHHHHHhCcCccC
Confidence 888999887777744 11 122223344444333333 33344445533333 33344433332222
Q ss_pred EcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024292 222 NQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 222 ~Q~~~s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
- ++.++.+...+.++.||..|-
T Consensus 190 p--------~~ddr~gwAkLmkK~GVkgiH 211 (481)
T COG5310 190 P--------AQDDREGWAKLMKKAGVKGIH 211 (481)
T ss_pred C--------cchhhHHHHHHHHHcCCceEE
Confidence 1 112223678888888877664
No 272
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=37.33 E-value=3.5e+02 Score=25.22 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhcCCCeeE
Q 024292 204 RLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~ 221 (269)
.++++.+++++.++.+.+
T Consensus 163 dl~~I~~la~~~gi~vIv 180 (405)
T PRK08776 163 DLRFVIEAAHKVGALTVV 180 (405)
T ss_pred CHHHHHHHHHHcCCEEEE
Confidence 345555555555543333
No 273
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=37.01 E-value=98 Score=28.83 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=22.4
Q ss_pred cccCCccCCCcchh---hHHHHHHHcCCeEEEccc
Q 024292 223 QVNYSLIYRKPEEN---GVKAACDELGITLIAYCP 254 (269)
Q Consensus 223 Q~~~s~~~~~~~~~---~l~~~~~~~gi~via~~p 254 (269)
...||..+..+.++ ++.++|+++||.+-.|=.
T Consensus 115 ~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S 149 (384)
T smart00812 115 YSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHS 149 (384)
T ss_pred CCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcC
Confidence 44666665544332 699999999999988644
No 274
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=36.95 E-value=68 Score=26.29 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHcCCccEEEecC
Q 024292 176 NEGFIDGLGDAVEQGLVKAVGVSN 199 (269)
Q Consensus 176 ~~~~~~~L~~l~~~G~ir~iGvSn 199 (269)
.+++-+.+++++++| |++|.||.
T Consensus 133 ~~~v~~~~~~l~~~g-v~avAV~~ 155 (176)
T PF05378_consen 133 EDEVREALRELKDKG-VEAVAVSL 155 (176)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEEC
Confidence 456666666666665 66666663
No 275
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=36.81 E-value=2e+02 Score=26.00 Aligned_cols=91 Identities=23% Similarity=0.228 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeec--CCCCChHHHHHHHHHHHHcCCccEEEec--CcCHHHHHHHHHHHHhcCCCe
Q 024292 144 RQSVLAALKDSLFRLGLSSVELYQLHW--AGIWGNEGFIDGLGDAVEQGLVKAVGVS--NYSEKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 144 ~~~i~~~l~~sL~~L~~dyiDl~~lH~--p~~~~~~~~~~~L~~l~~~G~ir~iGvS--n~~~~~l~~~~~~~~~~~~~~ 219 (269)
.+.+++..+...++|+...+.+-+--. +..|-...+-+.|++|.++| ++.|=|. +|-.+.+|.+.++
T Consensus 206 ~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lETl~ei-------- 276 (316)
T PF00762_consen 206 PAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRVVVVPPGFVSDCLETLYEI-------- 276 (316)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEEEEEETT-SSSSHHHHCCC--------
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeEEEECCccccccHhHHHHH--------
Confidence 456777777777888876655544422 22344567889999999999 5555544 2334445544221
Q ss_pred eEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCC
Q 024292 220 ASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQD 258 (269)
Q Consensus 220 ~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G 258 (269)
++ +..+.++++|+.-..+-|--+.
T Consensus 277 di---------------e~re~~~~~G~~~~~~ip~lN~ 300 (316)
T PF00762_consen 277 DI---------------EYRELAEEAGGEEFVRIPCLND 300 (316)
T ss_dssp CC---------------HHHHHHHHHTCCEEEE---STT
T ss_pred HH---------------HHHHHHHHcCCceEEEeCCCCC
Confidence 11 3567777777755555554443
No 276
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=36.80 E-value=3.2e+02 Score=24.60 Aligned_cols=163 Identities=18% Similarity=0.087 Sum_probs=83.2
Q ss_pred cceeeEeCC-CCcccccce-------ecccccCCCCc-CCCCCCChhhHHHHHHHHHHHHHCCC---CeeecccccCCCC
Q 024292 35 AEDKVKLGG-SDLKVTKLG-------VGAWSWGDTSY-WNNFQWDDRKMKAAKAAFDTSLDNGI---TFFDTAEVYGSRA 102 (269)
Q Consensus 35 ~m~~~~lg~-tg~~vs~lg-------lG~~~~g~~~~-~~~~~~~~~~~~~~~~~l~~A~~~Gi---n~~DTA~~Yg~g~ 102 (269)
+.+.+++|. +|+++++-. .=||. |.... +.. .-.-+..+...+-++......- .-+|-...-+.|+
T Consensus 13 p~ksrryG~slgi~~tP~~~~Cs~~CvyC~~-G~~~~~~~~-~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GE 90 (296)
T COG0731 13 PVKSRRYGISLGIQMTPSKKWCSYNCVYCWR-GRTKKGTPE-RPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGE 90 (296)
T ss_pred CccccccccccCCccccchhhhcCCCeEEec-ccCCCCCCC-CCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCC
Confidence 567777874 455554433 22454 33211 110 0111234455555555444321 2344444445542
Q ss_pred CCCCCchHHHHHHHHhhccCCCCCC--cEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEee--cCCC-----
Q 024292 103 SFGAINSETLLGRFIKERKQRDPEV--EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLH--WAGI----- 173 (269)
Q Consensus 103 ~~~~~~sE~~lG~al~~~~~~~~R~--~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH--~p~~----- 173 (269)
. .=-..+|+.++.... |. .+||.|-.. +.+.+++|. ..|++++- .|+.
T Consensus 91 P----TLy~~L~elI~~~k~---~g~~~tflvTNgs--------------lpdv~~~L~--~~dql~~sLdA~~~~~~~~ 147 (296)
T COG0731 91 P----TLYPNLGELIEEIKK---RGKKTTFLVTNGS--------------LPDVLEELK--LPDQLYVSLDAPDEKTFRR 147 (296)
T ss_pred c----ccccCHHHHHHHHHh---cCCceEEEEeCCC--------------hHHHHHHhc--cCCEEEEEeccCCHHHHHH
Confidence 1 001235555554432 23 788888851 255566665 56777663 2221
Q ss_pred -------CChHHHHHHHHHHHHc--CC--ccEEEec--CcCHHHHHHHHHHHHhcCCCeeEEcc
Q 024292 174 -------WGNEGFIDGLGDAVEQ--GL--VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 174 -------~~~~~~~~~L~~l~~~--G~--ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~ 224 (269)
...+.+++.|+.+.+. |. +|..=|- |++.+.++++.+..++. .|+.+|+
T Consensus 148 InRP~~~~~~e~ile~L~~~~~~~~~~~vir~tlvkg~N~~~e~~~~~a~ll~~~--~Pd~vel 209 (296)
T COG0731 148 INRPHKKDSWEKILEGLEIFRSEYKGRTVIRTTLVKGINDDEEELEEYAELLERI--NPDFVEL 209 (296)
T ss_pred hcCCCCcchHHHHHHHHHHhhhcCCCcEEEEEEEeccccCChHHHHHHHHHHHhc--CCCeEEE
Confidence 3367899999999985 43 2333333 66666677777765543 4566555
No 277
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=36.72 E-value=2.7e+02 Score=25.10 Aligned_cols=117 Identities=12% Similarity=0.083 Sum_probs=69.3
Q ss_pred HHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 024292 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (269)
Q Consensus 78 ~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~ 157 (269)
.++...+...|+.|+-++..|-.... .+.+-+|++..+ -.++++---|+..|.++++ ..++.+...
T Consensus 161 kdi~~i~~a~g~~yVA~~~~~~~~~~------~~~i~~A~~~~G-----ps~I~~~spC~~~~~~~~~---~~~~~~k~A 226 (300)
T PRK11864 161 KPVPDIMAAHKVPYVATASIAYPEDF------IRKLKKAKEIRG-----FKFIHLLAPCPPGWRFDPD---KTIEIARLA 226 (300)
T ss_pred CCHHHHHHHcCCCEEEEEeCCCHHHH------HHHHHHHHhCCC-----CEEEEEeCCCCCCCCcChH---HHHHHHHHH
Confidence 45666677889999999888754333 677777775432 4566555555544555554 344444455
Q ss_pred hCCCccceEEeec-------CCC--CChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHH
Q 024292 158 LGLSSVELYQLHW-------AGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (269)
Q Consensus 158 L~~dyiDl~~lH~-------p~~--~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~ 213 (269)
-.+.|.-||-+.. +.+ .+.......-+-|+.||+.+++ +++.++++.+.++
T Consensus 227 v~tg~wplye~~~g~~~~~~~~~~~~~~~~~~pv~~~l~~q~Rf~~L-----~~~~~~~~q~~vd 286 (300)
T PRK11864 227 VETGVWPLFEYENGKFKLNSPSKTLLDKKKRKPVEEYLKLQGRFKHL-----TEEEIKGLQEEID 286 (300)
T ss_pred HHcCCceEEEEECCEEEEccCCccccccccCCCHHHHHhhccchhcC-----CHHHHHHHHHHHH
Confidence 5566666665542 110 0111112333457889999988 3677777766543
No 278
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=36.68 E-value=2.7e+02 Score=23.75 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHH-HH
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL-AA 150 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~-~~ 150 (269)
.+.++..++++.|.+.|+.-+-..+.|- ....+.|+. ..+-|.|=++. |.+...-..+ ..
T Consensus 19 ~t~~~i~~~~~~A~~~~~~avcv~p~~v-----------~~a~~~l~~-------~~v~v~tVigF-P~G~~~~~~K~~e 79 (221)
T PRK00507 19 ATEEDIDKLCDEAKEYGFASVCVNPSYV-----------KLAAELLKG-------SDVKVCTVIGF-PLGANTTAVKAFE 79 (221)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEECHHHH-----------HHHHHHhCC-------CCCeEEEEecc-cCCCChHHHHHHH
Confidence 3568999999999998887776655553 233444432 35667777653 3343333333 33
Q ss_pred HHHHHHHhCCCccceEEeec--CCCCChHHHHHHHHHHHHc--CCccEEEe---cC-cCHHHHHHHHHHHHhcCCCeeEE
Q 024292 151 LKDSLFRLGLSSVELYQLHW--AGIWGNEGFIDGLGDAVEQ--GLVKAVGV---SN-YSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 151 l~~sL~~L~~dyiDl~~lH~--p~~~~~~~~~~~L~~l~~~--G~ir~iGv---Sn-~~~~~l~~~~~~~~~~~~~~~~~ 222 (269)
.++.+ ..|.|-||++ +.. +..-..+.+.+.+.++++. |+ .+=| +. .+.+++.++.+.+...|..|.-.
T Consensus 80 ~~~Ai-~~GA~EiD~V-in~~~~~~g~~~~v~~ei~~v~~~~~~~--~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKT 155 (221)
T PRK00507 80 AKDAI-ANGADEIDMV-INIGALKSGDWDAVEADIRAVVEAAGGA--VLKVIIETCLLTDEEKVKACEIAKEAGADFVKT 155 (221)
T ss_pred HHHHH-HcCCceEeee-ccHHHhcCCCHHHHHHHHHHHHHhcCCc--eEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEc
Confidence 33333 4788999955 332 2223456777777777774 43 3333 44 47788999999888877665555
Q ss_pred cccCCccCCCcchhhHHHHHHH--cCCeEEEc
Q 024292 223 QVNYSLIYRKPEENGVKAACDE--LGITLIAY 252 (269)
Q Consensus 223 Q~~~s~~~~~~~~~~l~~~~~~--~gi~via~ 252 (269)
-.-|.......+. +.-+++. ..++|.+.
T Consensus 156 sTG~~~~gat~~~--v~~m~~~~~~~~~IKas 185 (221)
T PRK00507 156 STGFSTGGATVED--VKLMRETVGPRVGVKAS 185 (221)
T ss_pred CCCCCCCCCCHHH--HHHHHHHhCCCceEEee
Confidence 5555443333332 2223333 34777774
No 279
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=36.67 E-value=1.3e+02 Score=29.18 Aligned_cols=99 Identities=9% Similarity=0.019 Sum_probs=57.5
Q ss_pred HHHHHHhhccCCCCCCcEEEEecCCCCCC----------------CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC
Q 024292 112 LLGRFIKERKQRDPEVEVTVATKFAALPW----------------RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG 175 (269)
Q Consensus 112 ~lG~al~~~~~~~~R~~v~I~tK~~~~~~----------------~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~ 175 (269)
.+..+-+++-...-+.++||++-+|.... +.+++. .-+|+.+.|+|.+. .+
T Consensus 142 T~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~vEvd~~r-------i~kR~~~g~ld~~~------~~ 208 (546)
T PF01175_consen 142 TFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLIVEVDPSR-------IEKRLEQGYLDEVT------DD 208 (546)
T ss_dssp HHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEEEES-HHH-------HHHHHHTTSSSEEE------SS
T ss_pred HHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEEEEECHHH-------HHHHHhCCCeeEEc------CC
Confidence 33344444332334789999999986321 223333 34577788999653 35
Q ss_pred hHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCee--EEcccCC
Q 024292 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA--SNQVNYS 227 (269)
Q Consensus 176 ~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~--~~Q~~~s 227 (269)
.++.++..++.+++|+..+||+-..-.+.++++++. ++.|+ .-|...|
T Consensus 209 ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~----~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 209 LDEALARAKEARAKKEPLSIGLLGNAADLWEELVER----GIIPDLVTDQTSAH 258 (546)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHT----T---SEE---SSTT
T ss_pred HHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHc----CCCCCcccCCCccc
Confidence 789999999999999999999988777777777543 55554 4577663
No 280
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=36.64 E-value=3.8e+02 Score=25.49 Aligned_cols=105 Identities=20% Similarity=0.234 Sum_probs=56.1
Q ss_pred HHHHHHHHhhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC---hHHH---HHH
Q 024292 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEGF---IDG 182 (269)
Q Consensus 110 E~~lG~al~~~~~~~~R-~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~---~~~~---~~~ 182 (269)
|+.|-++|++.....|+ +-++|.|=+.. ..--+.+..-+++.-++.+ -+.++.+|.|+... ..+. .++
T Consensus 109 e~kL~~aI~e~~~~~p~p~~I~V~stC~~---~lIGDDi~~v~~e~~~~~~--~~pvv~v~t~gf~g~s~~~G~~~a~~a 183 (457)
T TIGR01284 109 EKKLKRCILEAFREFPEIKRMYTYATCTT---ALIGDDIDAIAREVMEEIP--DVDVFAINAPGFAGPSQSKGHHVANIT 183 (457)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCChH---HhhccCHHHHHHHHHHhcC--CCeEEEeeCCCcCCcccchHHHHHHHH
Confidence 78888888876543332 33667666532 2222333333333322321 26899999887532 1222 222
Q ss_pred -HHHHH--------HcCCccEEEecCcCHHHHHHHHHHHHhcCCCee
Q 024292 183 -LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 183 -L~~l~--------~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (269)
++++. ..++|--||-.|. +..++++.++++..|+.+.
T Consensus 184 l~~~l~~~~~~~~~~~~~VNiiG~~~~-~gd~~el~~lL~~~Gl~v~ 229 (457)
T TIGR01284 184 WINDKVGTAEPEITTEYDVNLIGEYNI-QGDLWVLKKYFERMGIQVL 229 (457)
T ss_pred HHHHHhCccCcccCCCCeEEEEccCCc-hhhHHHHHHHHHHcCCeEE
Confidence 23333 2356778885554 3456666666777776653
No 281
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=36.62 E-value=71 Score=29.07 Aligned_cols=63 Identities=24% Similarity=0.454 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCccEEEecCcCH-------HHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHH
Q 024292 179 FIDGLGDAVEQGLVKAVGVSNYSE-------KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDE 244 (269)
Q Consensus 179 ~~~~L~~l~~~G~ir~iGvSn~~~-------~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~ 244 (269)
+-+++++++++|.-|.+-+|-|+. ..+.++.+..++.+...+ +.++++++++-+.+++....+
T Consensus 142 TEea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~l~r~~r~~~~~~~---~~wsiIdrW~t~~glIkafA~ 211 (395)
T KOG1321|consen 142 TEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYERD---IKWSIIDRWPTREGLIKAFAE 211 (395)
T ss_pred cHHHHHHHHhcCceeEEeeccCCceeeecCcccHHHHHHHHHhcCcccC---CceEeeccccccchHHHHHHH
Confidence 457899999999999999986532 345555555555543333 477888988876666665544
No 282
>PLN02591 tryptophan synthase
Probab=36.48 E-value=2.9e+02 Score=24.07 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCccEEEecCcCH---HHHHHHHHHHHhcCCC-eeEEcccCCccCCCcchhhHHHHHHHcCCeEEEc
Q 024292 177 EGFIDGLGDAVEQGLVKAVGVSNYSE---KRLRNAYEKLKKRGIP-LASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (269)
Q Consensus 177 ~~~~~~L~~l~~~G~ir~iGvSn~~~---~~l~~~~~~~~~~~~~-~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~ 252 (269)
+++++.+++++++=.+.-|=++-+++ .-++++++.++..|+. +-+.-.++ .+..++.+.|+++|+..|..
T Consensus 64 ~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~------ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 64 DSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPL------EETEALRAEAAKNGIELVLL 137 (250)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCH------HHHHHHHHHHHHcCCeEEEE
Confidence 46777777877654555555555554 3567777777777753 22221111 12236889999999988876
Q ss_pred c
Q 024292 253 C 253 (269)
Q Consensus 253 ~ 253 (269)
-
T Consensus 138 v 138 (250)
T PLN02591 138 T 138 (250)
T ss_pred e
Confidence 5
No 283
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=36.32 E-value=3e+02 Score=24.11 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=54.8
Q ss_pred HHHHHHHHC--CCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecC-CCCCCCCCHHHHHHHHHH--
Q 024292 79 AAFDTSLDN--GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKF-AALPWRLGRQSVLAALKD-- 153 (269)
Q Consensus 79 ~~l~~A~~~--Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~-~~~~~~~~~~~i~~~l~~-- 153 (269)
+++++|++. |...|.....-. ... +++ -+.+++++ -.+++.+-- ... ..+.+...+.+++
T Consensus 80 ~v~eaaL~~~~G~~iINsIs~~~-~~~------~~~-~~l~~~~g-----~~vv~m~~~~~g~--P~t~~~~~~~l~~~v 144 (261)
T PRK07535 80 AAIEAGLKVAKGPPLINSVSAEG-EKL------EVV-LPLVKKYN-----APVVALTMDDTGI--PKDAEDRLAVAKELV 144 (261)
T ss_pred HHHHHHHHhCCCCCEEEeCCCCC-ccC------HHH-HHHHHHhC-----CCEEEEecCCCCC--CCCHHHHHHHHHHHH
Confidence 356666666 777775543221 011 433 35666664 355554421 011 1233333333333
Q ss_pred -HHHHhCCC----ccceEEeec-CCCCChHHHHHHHHHHHHc--CCccEEEecCcC
Q 024292 154 -SLFRLGLS----SVELYQLHW-AGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYS 201 (269)
Q Consensus 154 -sL~~L~~d----yiDl~~lH~-p~~~~~~~~~~~L~~l~~~--G~ir~iGvSn~~ 201 (269)
.+...|++ ++|-.+.-. .+.....++++.++.+++. |.=-.+|+||-+
T Consensus 145 ~~a~~~GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 145 EKADEYGIPPEDIYIDPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred HHHHHcCCCHhHEEEeCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 33456775 333333211 0111245678888888888 888889999864
No 284
>PRK10508 hypothetical protein; Provisional
Probab=36.32 E-value=52 Score=29.96 Aligned_cols=43 Identities=9% Similarity=0.106 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHH
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE 188 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~ 188 (269)
-+++.+.+.|++..+++|+|.+ + ++.+. .+.++.++.++-|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del-~--~~~~~-~~~e~~~~S~~lla~ 328 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI-M--VNGQI-FDHQARLHSFELAMD 328 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE-E--EECCC-CCHHHHHHHHHHHHH
Confidence 4688899999888888988877 2 33322 355555555554443
No 285
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=36.22 E-value=3.3e+02 Score=24.59 Aligned_cols=85 Identities=19% Similarity=0.139 Sum_probs=55.1
Q ss_pred HHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 024292 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLF 156 (269)
Q Consensus 77 ~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~ 156 (269)
-.+.+..+++.|-.+|=+..++|+ -++.+.++.... ..+...-| ......+...+.+..+
T Consensus 111 g~e~l~e~l~~~~gvIl~~~H~gn---------~E~~~~~l~~~~-----~~~~~~yr------p~~np~ld~~i~~~R~ 170 (308)
T COG1560 111 GLEHLEEALANGRGVILVTPHFGN---------WELGGRALAQQG-----PKVTAMYR------PPKNPLLDWLITRGRE 170 (308)
T ss_pred CHHHHHHHHHcCCCEEEEecCcch---------HHHHHHHHHHhC-----CCeeEEec------CCCCHHHHHHHHHHHH
Confidence 455677777887777777788887 777888887764 23222222 3445668888888888
Q ss_pred HhCCCccceEEeecCCCCChHHHHHHHHHHHHcCC
Q 024292 157 RLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL 191 (269)
Q Consensus 157 ~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ 191 (269)
+.|...++ ...+-++.|-+..++|.
T Consensus 171 r~~~~~~~----------~~~~~ir~li~~Lk~G~ 195 (308)
T COG1560 171 RFGGRLLP----------RKGEGIRQLIKALKQGE 195 (308)
T ss_pred hcCCcccC----------CCchhHHHHHHHHhcCC
Confidence 99887766 22244555555555553
No 286
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=36.22 E-value=2.9e+02 Score=24.04 Aligned_cols=107 Identities=19% Similarity=0.170 Sum_probs=58.3
Q ss_pred HHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCC----C----CHHHHHHH
Q 024292 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWR----L----GRQSVLAA 150 (269)
Q Consensus 79 ~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~----~----~~~~i~~~ 150 (269)
+.++.|++.|...|.....-.. ++.+ +.+++++ -.+++...-+. |.. . ..+.+.+.
T Consensus 86 ~vi~~al~~G~~iINsis~~~~---------~~~~-~l~~~~~-----~~vV~m~~~g~-p~~~~~~~~~~~~~~~~~~~ 149 (257)
T TIGR01496 86 EVARAALEAGADIINDVSGGQD---------PAML-EVAAEYG-----VPLVLMHMRGT-PRTMQENPHYEDVVEEVLRF 149 (257)
T ss_pred HHHHHHHHcCCCEEEECCCCCC---------chhH-HHHHHcC-----CcEEEEeCCCC-CcccccCCCcccHHHHHHHH
Confidence 4677788889888875433222 4444 4456554 45666554332 111 0 12334444
Q ss_pred HHHH---HHHhCCCccceEEeecCCC----CChHHHHHHHHHHHHcCCccEEEecCcC
Q 024292 151 LKDS---LFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (269)
Q Consensus 151 l~~s---L~~L~~dyiDl~~lH~p~~----~~~~~~~~~L~~l~~~G~ir~iGvSn~~ 201 (269)
+++. +++.|++.-|+++=-.... ...-++++.++++++.|.=-.+|+||-+
T Consensus 150 ~~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkS 207 (257)
T TIGR01496 150 LEARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKS 207 (257)
T ss_pred HHHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 4444 4556776445443211111 1134667778888888877789999864
No 287
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=36.00 E-value=2.9e+02 Score=23.89 Aligned_cols=75 Identities=24% Similarity=0.217 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEE
Q 024292 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 144 ~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~ 222 (269)
...+.+.+++.++++| |.++++. .+...+.....+.++.+..++ +..|-++..+.+.+...++.+...++|+.++
T Consensus 13 ~~~~~~gi~~~a~~~g--~~~~i~~-~~~~~d~~~q~~~i~~l~~~~-vdgiIi~~~~~~~~~~~l~~~~~~giPvV~~ 87 (302)
T TIGR02637 13 FEAANKGAEEAAKELG--SVYIIYT-GPTGTTAEGQIEVVNSLIAQK-VDAIAISANDPDALVPALKKAMKRGIKVVTW 87 (302)
T ss_pred HHHHHHHHHHHHHHhC--CeeEEEE-CCCCCCHHHHHHHHHHHHHcC-CCEEEEeCCChHHHHHHHHHHHHCCCEEEEe
Confidence 4567788888888887 3344333 111234455667777777654 7778777766666666666666666665443
No 288
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=35.78 E-value=2.4e+02 Score=23.02 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHHHhCCCccceE
Q 024292 143 GRQSVLAALKDSLFRLGLSSVELY 166 (269)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~dyiDl~ 166 (269)
+++.+.+.++ .+.+.|.|+|-+-
T Consensus 9 ~~~~~~~~~~-~~~~~g~d~i~~~ 31 (210)
T TIGR01163 9 DFARLGEEVK-AVEEAGADWIHVD 31 (210)
T ss_pred CHHHHHHHHH-HHHHcCCCEEEEc
Confidence 3444444444 3445566665554
No 289
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=35.69 E-value=1.6e+02 Score=21.69 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=42.3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC--CChHHHHHHHHHH
Q 024292 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDA 186 (269)
Q Consensus 126 R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~--~dyiDl~~lH~p~~--~~~~~~~~~L~~l 186 (269)
|=-+.|+-|++ ....+..+++.+.+.++... ....|++++-.+.. .+..++.+.|++|
T Consensus 42 RlGi~vsKK~g---~AV~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l 103 (105)
T TIGR00188 42 RVGLSVSKKVK---NAVERNRIKRLIREVFRERQELLKALDVVVIVRKGFSELTYEAFLKLLLQL 103 (105)
T ss_pred EEEEEEecccC---chhHHHHHHHHHHHHHHHhhcccCCccEEEEECCCcCcCCHHHHHHHHHHH
Confidence 66788888876 35778888888888887653 23579999888764 4566777777665
No 290
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=35.62 E-value=1.5e+02 Score=25.67 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=52.3
Q ss_pred HHHHhCCCccceEEeecC---CC--CChHHHHHHHHHHHHcCCc-cEEEec--------CcCH-------HHHHHHHHHH
Q 024292 154 SLFRLGLSSVELYQLHWA---GI--WGNEGFIDGLGDAVEQGLV-KAVGVS--------NYSE-------KRLRNAYEKL 212 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p---~~--~~~~~~~~~L~~l~~~G~i-r~iGvS--------n~~~-------~~l~~~~~~~ 212 (269)
..+++|.|+|++..-+.. +. +...+.-+....+.+.|.- -.++++ +.++ +.++++++.+
T Consensus 24 ~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a 103 (279)
T TIGR00542 24 LAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLA 103 (279)
T ss_pred HHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHH
Confidence 446899999999532211 11 2234444444556666652 233322 2122 3467777888
Q ss_pred HhcCCCeeEEcccCCcc-CCCcch---------hhHHHHHHHcCCeEEEcccc
Q 024292 213 KKRGIPLASNQVNYSLI-YRKPEE---------NGVKAACDELGITLIAYCPI 255 (269)
Q Consensus 213 ~~~~~~~~~~Q~~~s~~-~~~~~~---------~~l~~~~~~~gi~via~~pl 255 (269)
...|.+..++ ..+... ....++ ..+.++++++||.+.- -+.
T Consensus 104 ~~lG~~~v~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~l-E~~ 154 (279)
T TIGR00542 104 RDLGIRTIQL-AGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAV-EIM 154 (279)
T ss_pred HHhCCCEEEe-cCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEE-eeC
Confidence 8777764433 112111 111121 1577889999996544 444
No 291
>PRK09061 D-glutamate deacylase; Validated
Probab=35.61 E-value=4.1e+02 Score=25.61 Aligned_cols=116 Identities=13% Similarity=0.104 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 024292 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~s 154 (269)
++..++++.|++.|+..|=+...|-.+.+ ...+-+.++... +-+..|...+.... ..+......++++.
T Consensus 169 ~~m~~ll~~al~~Ga~gis~~~~y~p~~~------~~eL~~l~~~A~----~~g~~v~~H~e~~~-~~~~~~e~~av~~~ 237 (509)
T PRK09061 169 AEILELLEQGLDEGALGIGIGAGYAPGTG------HKEYLELARLAA----RAGVPTYTHVRYLS-NVDPRSSVDAYQEL 237 (509)
T ss_pred HHHHHHHHHHHHCCCCEEecCCccCCCCC------HHHHHHHHHHHH----HcCCEEEEEecCcc-cCCchhHHHHHHHH
Confidence 44777888899999999977656644433 555666666554 34667777763210 01222233344444
Q ss_pred HHHhCCCccceEEeecCCC--CChHHHHHHHHHHHHcCCccEEEecCcC
Q 024292 155 LFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (269)
Q Consensus 155 L~~L~~dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~G~ir~iGvSn~~ 201 (269)
++....--.-+.+.|--.. ....+.++.+++.+++|.--..-++-|.
T Consensus 238 i~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 238 IAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred HHHHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 4332211134666675321 3457888999999999854444454443
No 292
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=35.58 E-value=2.3e+02 Score=23.98 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCC-CCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGS-RASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~-g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~ 152 (269)
.++...+.+.+.++|..|+=|+.-|+. |.+ ...-+.+-+.++ ++ +-.|... .-.+.+...+-++
T Consensus 131 ~~ei~~a~~ia~eaGADfvKTsTGf~~~gat---~~dv~~m~~~v~--------~~--v~IKaaG--Girt~~~a~~~i~ 195 (211)
T TIGR00126 131 DEEIRKACEICIDAGADFVKTSTGFGAGGAT---VEDVRLMRNTVG--------DT--IGVKASG--GVRTAEDAIAMIE 195 (211)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCCCCCCCCC---HHHHHHHHHHhc--------cC--CeEEEeC--CCCCHHHHHHHHH
Confidence 367778899999999999999988873 322 001133333332 21 2333322 1237788888888
Q ss_pred HHHHHhCCCcc
Q 024292 153 DSLFRLGLSSV 163 (269)
Q Consensus 153 ~sL~~L~~dyi 163 (269)
.--.|+|++..
T Consensus 196 aGa~riGts~~ 206 (211)
T TIGR00126 196 AGASRIGASAG 206 (211)
T ss_pred HhhHHhCcchH
Confidence 88899998753
No 293
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.57 E-value=2e+02 Score=24.41 Aligned_cols=88 Identities=15% Similarity=0.168 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCC---ccEEEecCc-CHHHHHHHHHHHHhcCCC
Q 024292 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL---VKAVGVSNY-SEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~---ir~iGvSn~-~~~~l~~~~~~~~~~~~~ 218 (269)
+.+...+- -+.|-.-|+.-+.+=+= ..+.++.+++++++-. =-.||.-+. ++++++++++. |..
T Consensus 23 ~~~~a~~~-~~al~~~Gi~~iEit~~-------~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a----GA~ 90 (213)
T PRK06552 23 SKEEALKI-SLAVIKGGIKAIEVTYT-------NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA----GAQ 90 (213)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEECC-------CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc----CCC
Confidence 45544443 34566667665554332 2346677777766431 145888776 78888887654 445
Q ss_pred eeEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024292 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 219 ~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
|.+ +|.. .. +++++|+++||.++.
T Consensus 91 Fiv-----sP~~---~~-~v~~~~~~~~i~~iP 114 (213)
T PRK06552 91 FIV-----SPSF---NR-ETAKICNLYQIPYLP 114 (213)
T ss_pred EEE-----CCCC---CH-HHHHHHHHcCCCEEC
Confidence 554 2321 12 599999999998874
No 294
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=35.45 E-value=3.2e+02 Score=24.25 Aligned_cols=111 Identities=14% Similarity=-0.011 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHHh---CCCccceEEeecCCC---CChHH----HHHHHHHHHHcCCccE-EEec---CcCHHHHHH
Q 024292 142 LGRQSVLAALKDSLFRL---GLSSVELYQLHWAGI---WGNEG----FIDGLGDAVEQGLVKA-VGVS---NYSEKRLRN 207 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L---~~dyiDl~~lH~p~~---~~~~~----~~~~L~~l~~~G~ir~-iGvS---n~~~~~l~~ 207 (269)
.+++.+.......++.+ |+-|+|+.+-..... .+.++ +.+++++.+++-.||. +.++ +.+++.+++
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~ 145 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQE 145 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHH
Confidence 45666666666655544 777888664322111 23333 3556666655533332 2222 235566666
Q ss_pred HHHHHHhcCCCeeEEcccCCccC--CC-cchhhHHHHHHHcCCeEEEcc
Q 024292 208 AYEKLKKRGIPLASNQVNYSLIY--RK-PEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 208 ~~~~~~~~~~~~~~~Q~~~s~~~--~~-~~~~~l~~~~~~~gi~via~~ 253 (269)
.++.+.+.... .++-+....-. .. .+-..+++.|+++|+.+..+.
T Consensus 146 ~~~~~~~~~~~-~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~ 193 (325)
T cd01320 146 TLELALKYRDK-GVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHA 193 (325)
T ss_pred HHHHHHhccCC-CEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeC
Confidence 66665433211 12222221111 11 111257888888888888775
No 295
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=35.43 E-value=2.3e+02 Score=23.81 Aligned_cols=120 Identities=16% Similarity=0.042 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHCCCC-----eeecccccCCCCCCCCCchHHHHHHHHhh-ccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 024292 75 KAAKAAFDTSLDNGIT-----FFDTAEVYGSRASFGAINSETLLGRFIKE-RKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin-----~~DTA~~Yg~g~~~~~~~sE~~lG~al~~-~~~~~~R~~v~I~tK~~~~~~~~~~~~i~ 148 (269)
..+.-+..+|+-.|++ |+-.++.||- +..+ +.+.. .... -.. -+++.+.-. ...+....+
T Consensus 43 TAAlG~alRa~GhG~rv~vvQFiKg~~~~GE---------~~~~-~~~~~~v~~~-~~~-~g~tw~~~~--~~~d~~aa~ 108 (198)
T COG2109 43 TAALGLALRALGHGLRVGVVQFIKGGWKYGE---------EAAL-EKFGLGVEFH-GMG-EGFTWETQD--READIAAAK 108 (198)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEeecCcchhH---------HHHH-HhhccceeEE-ecC-CceeCCCcC--cHHHHHHHH
Confidence 4677788888888887 5667777773 3333 33211 0000 011 222222210 111345678
Q ss_pred HHHHHHHHHhCCCccceEEeecCCC------CChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHH
Q 024292 149 AALKDSLFRLGLSSVELYQLHWAGI------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (269)
Q Consensus 149 ~~l~~sL~~L~~dyiDl~~lH~p~~------~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~ 210 (269)
+.++.+.+.|..+..||+.|..... .+.+++++.|..-=..=-|-.-| .+ .+..|.++.+
T Consensus 109 ~~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTG-r~-ap~~lie~AD 174 (198)
T COG2109 109 AGWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITG-RG-APPELIELAD 174 (198)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEEC-CC-CCHHHHHHHH
Confidence 8899999999998999999987543 56777777776322232333444 23 3344444433
No 296
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=35.42 E-value=3.2e+02 Score=24.30 Aligned_cols=77 Identities=19% Similarity=0.171 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCC-c-cEEEecCcC------------HHH
Q 024292 139 PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-V-KAVGVSNYS------------EKR 204 (269)
Q Consensus 139 ~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~-i-r~iGvSn~~------------~~~ 204 (269)
+.-...+.+++-++...+ +. +-+.+-.--+|+.. .++.++.|.++++.|. + -++|+=+.+ .+.
T Consensus 88 ~t~l~~~~L~~l~~~i~~-~~-~~~~isi~trpd~l-~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~ 164 (302)
T TIGR01212 88 NTYAPVEVLKEMYEQALS-YD-DVVGLSVGTRPDCV-PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFAC 164 (302)
T ss_pred cCCCCHHHHHHHHHHHhC-CC-CEEEEEEEecCCcC-CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHHH
Confidence 344556666666655544 21 11222111234432 4566777777777776 4 356765443 344
Q ss_pred HHHHHHHHHhcCCC
Q 024292 205 LRNAYEKLKKRGIP 218 (269)
Q Consensus 205 l~~~~~~~~~~~~~ 218 (269)
+.++++.+++.++.
T Consensus 165 ~~~ai~~l~~~gi~ 178 (302)
T TIGR01212 165 YVDAVKRARKRGIK 178 (302)
T ss_pred HHHHHHHHHHcCCE
Confidence 55555566655554
No 297
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=35.40 E-value=1.9e+02 Score=21.79 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=42.1
Q ss_pred CCcEEEEec-CCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC--CChHHHHHHHHHHHH
Q 024292 126 EVEVTVATK-FAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (269)
Q Consensus 126 R~~v~I~tK-~~~~~~~~~~~~i~~~l~~sL~~L~--~dyiDl~~lH~p~~--~~~~~~~~~L~~l~~ 188 (269)
|--+.|+-| ++ ....+..+++.+.++.+.+. ....|++++-.+.. .+..++.+.|..|.+
T Consensus 46 R~G~~VsKK~~g---~AV~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~~~~~~l~~~l~~ll~ 110 (114)
T PRK01732 46 RLGLTVAKKNVK---RAHERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKLWR 110 (114)
T ss_pred EEEEEEEcccCc---chhHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 566777777 54 35678888888888887653 23569999987765 456777777776654
No 298
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=35.27 E-value=3.1e+02 Score=23.99 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCC-ccEEEecCcCHHHHHHHHHHHHhcCCCee
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (269)
++.+...+ +-+.|.++|+|.|.+-. |. ...+.++..+.+.+.++ .+-.+....+.+.++.+.+. +++..
T Consensus 19 ~s~~~k~~-i~~~L~~~Gv~~IEvG~---P~--~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~----g~~~i 88 (262)
T cd07948 19 FDTEDKIE-IAKALDAFGVDYIELTS---PA--ASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET----GVDGV 88 (262)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEEEC---CC--CCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc----CcCEE
Confidence 44554443 44458888888887763 42 23444555555554443 33355556667777776543 43322
Q ss_pred EEcccCCc------cCCCcch-----hhHHHHHHHcCCeEEEcc
Q 024292 221 SNQVNYSL------IYRKPEE-----NGVKAACDELGITLIAYC 253 (269)
Q Consensus 221 ~~Q~~~s~------~~~~~~~-----~~l~~~~~~~gi~via~~ 253 (269)
.+-+..|. +....++ .+++++++++|+.+...-
T Consensus 89 ~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 89 DLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 22122121 1122221 145677788887765543
No 299
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=35.23 E-value=3.1e+02 Score=26.45 Aligned_cols=125 Identities=12% Similarity=0.074 Sum_probs=74.8
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcc--ceEEeecCCCCC----hHHHHHHHHHHHHc-CCccE--EEe
Q 024292 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSV--ELYQLHWAGIWG----NEGFIDGLGDAVEQ-GLVKA--VGV 197 (269)
Q Consensus 127 ~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyi--Dl~~lH~p~~~~----~~~~~~~L~~l~~~-G~ir~--iGv 197 (269)
+.-.|.|=+-+ .-.++++...+.+.+.. .=|+|.| |=. +-++...+ ...+++++.+..++ |+-+- +-|
T Consensus 166 ~RPLigtiiKP-~~GLsp~~~A~~~y~~~-~GGvD~IKDDE~-l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 242 (475)
T CHL00040 166 GRPLLGCTIKP-KLGLSAKNYGRAVYECL-RGGLDFTKDDEN-VNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNA 242 (475)
T ss_pred CCceEEEeccc-ccCCCHHHHHHHHHHHH-cCCCcccccCcc-CCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeecc
Confidence 45566665432 13788998888877666 4456655 211 11111122 45677888877654 65443 333
Q ss_pred cCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccC
Q 024292 198 SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 198 Sn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~ 257 (269)
+.-+.+++.+-.+.+...|.. ++.+.+...--...+ .|.+.|++.++.|.++..+.+
T Consensus 243 Ta~~~~em~~ra~~a~e~G~~--~~mv~~~~~G~~al~-~l~~~~~~~~l~IhaHrA~~g 299 (475)
T CHL00040 243 TAGTCEEMYKRAVFARELGVP--IVMHDYLTGGFTANT-SLAHYCRDNGLLLHIHRAMHA 299 (475)
T ss_pred CCCCHHHHHHHHHHHHHcCCc--eEEEeccccccchHH-HHHHHhhhcCceEEecccccc
Confidence 333467777777777777643 344455444333332 477888899999999988764
No 300
>PF13289 SIR2_2: SIR2-like domain
Probab=35.22 E-value=1.4e+02 Score=22.51 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEE
Q 024292 177 EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (269)
Q Consensus 177 ~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~vi 250 (269)
...++.|.++.....+-.||.|-.++ .+..+++.+....-. ..+..|- +.+........++.++.||.+|
T Consensus 74 ~~~~~~l~~~l~~~~~lfiGys~~D~-~i~~~l~~~~~~~~~--~~~~~~~-v~~~~~~~~~~~~~~~~~i~~I 143 (143)
T PF13289_consen 74 PWFPNFLRSLLRSKTLLFIGYSFNDP-DIRQLLRSALENSGK--SRPRHYI-VIPDPDDENEREFLEKYGIEVI 143 (143)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCCH-HHHHHHHHHHHhccC--CCccEEE-EEcCCchHHHHHHHHHcCCEEC
Confidence 55778888888889999999996555 555555444332211 0000111 1111111247888889998875
No 301
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=35.18 E-value=1.9e+02 Score=22.53 Aligned_cols=60 Identities=12% Similarity=0.212 Sum_probs=41.6
Q ss_pred CCcEEEEec-CCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC--CChHHHHHHHHHHHH
Q 024292 126 EVEVTVATK-FAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (269)
Q Consensus 126 R~~v~I~tK-~~~~~~~~~~~~i~~~l~~sL~~L~--~dyiDl~~lH~p~~--~~~~~~~~~L~~l~~ 188 (269)
|=-+.|+-| ++ ....+..+++.+.++.+... ..-.|++++-.+.. .+..++.+.|..|.+
T Consensus 47 RiG~~VsKK~~g---~AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~ 111 (130)
T PRK00396 47 RLGLVIGKKSVK---LAVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWK 111 (130)
T ss_pred cEEEEEecccCc---cHhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 556777777 54 35678889999988887653 24579999998764 445666666665543
No 302
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=35.16 E-value=2e+02 Score=22.89 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=44.6
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC--CChHHHHHHHHHHHHc
Q 024292 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (269)
Q Consensus 126 R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~--~dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~ 189 (269)
|=-+.|+-|++. ....+..+++.+.++++.+. ....|++++-.+.. .+..++.+.|..|.+.
T Consensus 49 RlG~sVSKKvg~--~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 49 RLGLAVSRKVDT--RAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred EEEEEEeccccC--cchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 667888888742 35678889999988887653 33449888887754 5567777777777665
No 303
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=35.13 E-value=32 Score=26.86 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.2
Q ss_pred hHHHHHHHcCCeEEEccccc
Q 024292 237 GVKAACDELGITLIAYCPIA 256 (269)
Q Consensus 237 ~l~~~~~~~gi~via~~pl~ 256 (269)
++++.|++.||.|++|-.+.
T Consensus 48 e~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 48 EQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHCCCEEEEEEeee
Confidence 69999999999999998765
No 304
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=35.12 E-value=3.5e+02 Score=24.62 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecc
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA 95 (269)
.+.++..++++...++||..|+..
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 345889999999999999999985
No 305
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=35.09 E-value=1.2e+02 Score=25.26 Aligned_cols=36 Identities=19% Similarity=0.095 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHH
Q 024292 175 GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 175 ~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 211 (269)
...++.+.|+.|++.|.--+| +||.....++..++.
T Consensus 93 ~~~g~~~~l~~l~~~g~~~~i-~S~~~~~~~~~~l~~ 128 (222)
T PRK10826 93 LLPGVREALALCKAQGLKIGL-ASASPLHMLEAVLTM 128 (222)
T ss_pred CCCCHHHHHHHHHHCCCeEEE-EeCCcHHHHHHHHHh
Confidence 456889999999999866566 778777777766554
No 306
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=35.03 E-value=2.4e+02 Score=27.43 Aligned_cols=107 Identities=18% Similarity=0.171 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcC----------CccEEEecCcCHHHHHHHHHH
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG----------LVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G----------~ir~iGvSn~~~~~l~~~~~~ 211 (269)
++.+. +-.+-+.|.++|+|+|.+-+ |.. ..+-.++++.+.+.+ ..+-.+++....+.++.+++.
T Consensus 103 fs~ee-Ki~Ia~~L~~~GVd~IEvG~---Pa~--s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a 176 (503)
T PLN03228 103 LTPPQ-KLEIARQLAKLRVDIMEVGF---PGS--SEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEA 176 (503)
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEEeC---CCC--CHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHh
Confidence 45553 34555678899998888754 422 233344455554432 133446666666777777664
Q ss_pred HHhcCCCeeEEcccCCccC------CCcch-----hhHHHHHHHcCCeEEEccc
Q 024292 212 LKKRGIPLASNQVNYSLIY------RKPEE-----NGVKAACDELGITLIAYCP 254 (269)
Q Consensus 212 ~~~~~~~~~~~Q~~~s~~~------~~~~~-----~~l~~~~~~~gi~via~~p 254 (269)
....+.+-..+-+..|.++ ...++ .+.+++++++|...+.+++
T Consensus 177 ~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 177 LKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred hcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc
Confidence 2211222111111111111 11111 1477788888876555554
No 307
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=34.96 E-value=2.8e+02 Score=23.50 Aligned_cols=97 Identities=18% Similarity=0.122 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCc--------------C------HHHHH
Q 024292 147 VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY--------------S------EKRLR 206 (269)
Q Consensus 147 i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~--------------~------~~~l~ 206 (269)
+.+.++.. +.+|.|.|++.. |.. ..++.+.++.++=-++-.+++.. + .+.++
T Consensus 16 l~e~~~~~-~e~G~~~vEl~~---~~~----~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (254)
T TIGR03234 16 FLERFAAA-AQAGFTGVEYLF---PYD----WDAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVA 87 (254)
T ss_pred HHHHHHHH-HHcCCCEEEecC---Ccc----CCHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHH
Confidence 44444433 477888888753 221 12344444443333333444311 0 25566
Q ss_pred HHHHHHHhcCCCeeEEcccCCccCCCcch---------hhHHHHHHHcCCeEEE
Q 024292 207 NAYEKLKKRGIPLASNQVNYSLIYRKPEE---------NGVKAACDELGITLIA 251 (269)
Q Consensus 207 ~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~---------~~l~~~~~~~gi~via 251 (269)
++++.|...|.+...+.....+.....++ .++.+++++.||.+..
T Consensus 88 ~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~l 141 (254)
T TIGR03234 88 LAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLI 141 (254)
T ss_pred HHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 77777877776543332222111111111 2467788888887553
No 308
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=34.82 E-value=1.8e+02 Score=30.11 Aligned_cols=97 Identities=12% Similarity=0.173 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHc--CCccEEEecCcCHHHHHHHHHHHHhcCCCee
Q 024292 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~--G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (269)
+-+.|++-.+.....--....-+|+|+..+.+. .+..++|.+..++ ..+..|-+++.....+..+.+.
T Consensus 101 ~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSR--------- 170 (824)
T PRK07764 101 GVDDARELRERAFFAPAESRYKIFIIDEAHMVT-PQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSR--------- 170 (824)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEechhhcC-HHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh---------
Confidence 456666544433222222345789998876544 5678888888888 8899999987543322222221
Q ss_pred EEcccCCccCCCcchhhHHHHHHHcCCeE
Q 024292 221 SNQVNYSLIYRKPEENGVKAACDELGITL 249 (269)
Q Consensus 221 ~~Q~~~s~~~~~~~~~~l~~~~~~~gi~v 249 (269)
+..++|..+....-..-|.+.|++.||.+
T Consensus 171 c~~v~F~~l~~~~l~~~L~~il~~EGv~i 199 (824)
T PRK07764 171 THHYPFRLVPPEVMRGYLERICAQEGVPV 199 (824)
T ss_pred eeEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 23345555443222223556677777753
No 309
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=34.81 E-value=2.1e+02 Score=25.46 Aligned_cols=97 Identities=14% Similarity=0.021 Sum_probs=45.6
Q ss_pred HHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEec-----CcCHHHHHHHHHHHHhcCC--CeeEE
Q 024292 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS-----NYSEKRLRNAYEKLKKRGI--PLASN 222 (269)
Q Consensus 150 ~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS-----n~~~~~l~~~~~~~~~~~~--~~~~~ 222 (269)
.+...+.-+..+.-|-+++..|.... +.+.++.+ ..++..+-+. ..+++.+++.++..+..+. ++.++
T Consensus 80 ~~~~~~~~~~~~~~~~vlv~~P~y~~---~~~~~~~~--g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~ 154 (363)
T PF00155_consen 80 ALFLLLRLLKINPGDTVLVPDPCYPS---YIEAARLL--GAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLI 154 (363)
T ss_dssp HHHHHHHHHHSSTTSEEEEEESSSTH---HHHHHHHT--TSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEE
T ss_pred chhhhhhcccccccccceecCCcccc---cccccccc--Cceeeeccccccccccccccccccccccccccccccceeee
Confidence 33333333423445777777775422 22222211 1224444433 3467777776554322221 23444
Q ss_pred cccCCccCCCcch---hhHHHHHHHcCCeEEE
Q 024292 223 QVNYSLIYRKPEE---NGVKAACDELGITLIA 251 (269)
Q Consensus 223 Q~~~s~~~~~~~~---~~l~~~~~~~gi~via 251 (269)
-..+||--..... .+++++|+++|+-++.
T Consensus 155 ~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~ 186 (363)
T PF00155_consen 155 CNPNNPTGSVLSLEELRELAELAREYNIIIIV 186 (363)
T ss_dssp ESSBTTTTBB--HHHHHHHHHHHHHTTSEEEE
T ss_pred cccccccccccccccccchhhhhcccccceee
Confidence 4445544332211 2466668888877774
No 310
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=34.80 E-value=1.2e+02 Score=26.92 Aligned_cols=54 Identities=15% Similarity=0.376 Sum_probs=38.3
Q ss_pred cCHHHHHHHHHHHHhcCCCeeEEcccCCccCC--------C----cchhhHHHHHHHcCCeEEEcc
Q 024292 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR--------K----PEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~--------~----~~~~~l~~~~~~~gi~via~~ 253 (269)
.+.+.++++++..++.++|++++++...-... + +.-.++++..+++|+.++.+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~ 86 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWI 86 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEe
Confidence 46778888888888888888887666422211 1 122369999999999998863
No 311
>PRK10200 putative racemase; Provisional
Probab=34.69 E-value=2.6e+02 Score=23.81 Aligned_cols=63 Identities=10% Similarity=-0.008 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-------------ChHHHHHHHHHHHHcCCccEEEecCcCHHHH
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-------------GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~-------------~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l 205 (269)
-+-+..++-++..-.+.+.|++|.+.+|.++.. +.+...+.++.|.+.| +..|-+.+.++...
T Consensus 14 aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~ 89 (230)
T PRK10200 14 STIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKV 89 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHH
Confidence 345566666677777788899999999987641 2345666777777777 79999988766554
No 312
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=34.62 E-value=3.6e+02 Score=24.55 Aligned_cols=81 Identities=10% Similarity=0.025 Sum_probs=44.1
Q ss_pred CcEEEEecCCCCCC---CCCHHHHHHHHHHHHHHhC-CCccceEEeecCC--------------CCChHHHHHHHHHHHH
Q 024292 127 VEVTVATKFAALPW---RLGRQSVLAALKDSLFRLG-LSSVELYQLHWAG--------------IWGNEGFIDGLGDAVE 188 (269)
Q Consensus 127 ~~v~I~tK~~~~~~---~~~~~~i~~~l~~sL~~L~-~dyiDl~~lH~p~--------------~~~~~~~~~~L~~l~~ 188 (269)
.++.|..|++.... ..+.+... .+-+.|+..| +|+|++ |... ..+..-.|+....+++
T Consensus 207 ~~~~v~iRl~~~~~~~~G~~~~e~~-~~~~~l~~~G~vd~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~ 282 (343)
T cd04734 207 PDFIVGIRISGDEDTEGGLSPDEAL-EIAARLAAEGLIDYVNV---SAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQ 282 (343)
T ss_pred CCCeEEEEeehhhccCCCCCHHHHH-HHHHHHHhcCCCCEEEe---CCCCCCcccccccccCCCCCCcchhHHHHHHHHH
Confidence 56778888875221 13444433 3334455555 555554 3110 0111223566666666
Q ss_pred cCCccEEEecCc-CHHHHHHHHHH
Q 024292 189 QGLVKAVGVSNY-SEKRLRNAYEK 211 (269)
Q Consensus 189 ~G~ir~iGvSn~-~~~~l~~~~~~ 211 (269)
.=++--|++.+. +++.++++++.
T Consensus 283 ~~~ipvi~~G~i~~~~~~~~~l~~ 306 (343)
T cd04734 283 AVDLPVFHAGRIRDPAEAEQALAA 306 (343)
T ss_pred HcCCCEEeeCCCCCHHHHHHHHHc
Confidence 656777777765 77888888653
No 313
>TIGR03586 PseI pseudaminic acid synthase.
Probab=34.50 E-value=3.6e+02 Score=24.56 Aligned_cols=133 Identities=15% Similarity=0.163 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccCC----------------CCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCC
Q 024292 73 KMKAAKAAFDTSLDNGITFFDTAEVYGS----------------RASFGAINSETLLGRFIKERKQRDPEVEVTVATKFA 136 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~----------------g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~ 136 (269)
+.++..++.+.+-+.|+.++=|...-.. ++. ..-.+| +.+.+. ...|+|+|=.
T Consensus 75 ~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~----~n~~LL-~~va~~-----gkPvilstG~- 143 (327)
T TIGR03586 75 PWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEI----TDLPLI-RYVAKT-----GKPIIMSTGI- 143 (327)
T ss_pred CHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccc----cCHHHH-HHHHhc-----CCcEEEECCC-
Confidence 4567778888899999998866422211 000 001222 122222 2455555543
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC---hHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHH
Q 024292 137 ALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (269)
Q Consensus 137 ~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~---~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~ 213 (269)
.+.+.+..+++...+. |. -|+.++|+...+| ..--+.++..|++.=. .-||+|.|+.-...-+..++
T Consensus 144 -----~t~~Ei~~Av~~i~~~-g~--~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~~~~~aAva- 213 (327)
T TIGR03586 144 -----ATLEEIQEAVEACREA-GC--KDLVLLKCTSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHTLGILAPVAAVA- 213 (327)
T ss_pred -----CCHHHHHHHHHHHHHC-CC--CcEEEEecCCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCCCchHHHHHHHH-
Confidence 3677888888765533 32 3799999865533 2223555566655433 46999999765544443332
Q ss_pred hcCCCeeEEcccCCcc
Q 024292 214 KRGIPLASNQVNYSLI 229 (269)
Q Consensus 214 ~~~~~~~~~Q~~~s~~ 229 (269)
.|. +++..++++-
T Consensus 214 -~GA--~iIEkH~tld 226 (327)
T TIGR03586 214 -LGA--CVIEKHFTLD 226 (327)
T ss_pred -cCC--CEEEeCCChh
Confidence 332 4666666553
No 314
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=34.37 E-value=3e+02 Score=23.75 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhcCCCeeEE
Q 024292 204 RLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~ 222 (269)
.+.++++.|...|.+..++
T Consensus 86 ~~~~~i~~A~~lG~~~v~~ 104 (279)
T cd00019 86 RLKDEIERCEELGIRLLVF 104 (279)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 4555555555555554333
No 315
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=34.36 E-value=4.2e+02 Score=25.27 Aligned_cols=116 Identities=9% Similarity=0.089 Sum_probs=63.0
Q ss_pred cccccCCCCCCCCCchHHHHHHHHhhccCCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC----ccceEEe
Q 024292 94 TAEVYGSRASFGAINSETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS----SVELYQL 168 (269)
Q Consensus 94 TA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~-R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d----yiDl~~l 168 (269)
..-.||. |+-|-++|++...+.+ .+=++|.|=+.. ..--|.|..-+++.-++|.-+ .+.++.+
T Consensus 67 ~dvVfGG---------~~kL~~aI~~~~~~~~~p~~I~V~ttC~~---eiIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v 134 (457)
T TIGR02932 67 ESAVFGG---------AKRIEEGVLTLARRYPNLRVIPIITTCST---ETIGDDIEGSIRKVNRALKKEFPDRKIKLVPV 134 (457)
T ss_pred CceEECc---------HHHHHHHHHHHHHhCCCCCEEEEECCchH---HhhcCCHHHHHHHHHhhhhhhcCCCCCeEEEe
Confidence 3457786 8888888887654331 244667666532 222233333333332222211 3688999
Q ss_pred ecCCCCC-----hHHHHHHHHHHH-H-----cCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEE
Q 024292 169 HWAGIWG-----NEGFIDGLGDAV-E-----QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 169 H~p~~~~-----~~~~~~~L~~l~-~-----~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~ 222 (269)
|.|+... .+.++++|-+.. + +++|--||-.+ ++..++++.++.+..|+.+.++
T Consensus 135 ~tpgF~gs~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~-~~gD~~eik~lL~~~Gl~vn~l 198 (457)
T TIGR02932 135 HTPSFKGSQVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWV-NPGDVVLLKHYFSEMGVDANIL 198 (457)
T ss_pred eCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEEEE
Confidence 9987632 334444443322 1 35577776433 3555666666677777665443
No 316
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=34.03 E-value=3.4e+02 Score=24.13 Aligned_cols=142 Identities=18% Similarity=0.157 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 024292 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (269)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL 155 (269)
-..++-....+.|+|..|.... .. . . ...+++...+. .|...+.+.+++.++...
T Consensus 20 IVa~VT~~La~~~vNI~dls~~-~~----------~---------~----~~~F~m~~~~~-~p~~~~~~~L~~~L~~l~ 74 (286)
T PRK13011 20 IVAAVTGFLAEHGCYITELHSF-DD----------R---------L----SGRFFMRVEFH-SEEGLDEDALRAGFAPIA 74 (286)
T ss_pred HHHHHHHHHHhCCCCEEEeeee-ec----------C---------C----CCeEEEEEEEe-cCCCCCHHHHHHHHHHHH
Confidence 3455556667999999998754 11 1 0 12333333332 134567899999999999
Q ss_pred HHhCCCccceEEeecCCC--------CChHHHHHHHHHHHHcCCc--cEEE-ecCcCHHHHHHHHHHHHhcCCCeeEEcc
Q 024292 156 FRLGLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQGLV--KAVG-VSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 156 ~~L~~dyiDl~~lH~p~~--------~~~~~~~~~L~~l~~~G~i--r~iG-vSn~~~~~l~~~~~~~~~~~~~~~~~Q~ 224 (269)
+.|++| + .++.+.. ......+++|-+..+.|.. .=.. +||+.. +. ..|++.++|+..+.
T Consensus 75 ~~l~l~-i---~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~--~~---~lA~~~gIp~~~~~- 144 (286)
T PRK13011 75 ARFGMQ-W---ELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPD--LE---PLAAWHGIPFHHFP- 144 (286)
T ss_pred HHhCcE-E---EEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCcc--HH---HHHHHhCCCEEEeC-
Confidence 999986 2 3333322 2245678888888888864 4444 377631 22 22566677655443
Q ss_pred cCCccCCCcchhhHHHHHHHcCCeEEEcc
Q 024292 225 NYSLIYRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 225 ~~s~~~~~~~~~~l~~~~~~~gi~via~~ 253 (269)
...-++...+..+++..++.++-++.-.
T Consensus 145 -~~~~~~~~~~~~~~~~l~~~~~Dlivla 172 (286)
T PRK13011 145 -ITPDTKPQQEAQVLDVVEESGAELVVLA 172 (286)
T ss_pred -CCcCchhhhHHHHHHHHHHhCcCEEEEe
Confidence 2332322223357888888887777543
No 317
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=33.95 E-value=1.9e+02 Score=25.96 Aligned_cols=46 Identities=17% Similarity=0.036 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhCCCccceE--EeecCCCCChHHHHHHHHHHHHcCCc
Q 024292 145 QSVLAALKDSLFRLGLSSVELY--QLHWAGIWGNEGFIDGLGDAVEQGLV 192 (269)
Q Consensus 145 ~~i~~~l~~sL~~L~~dyiDl~--~lH~p~~~~~~~~~~~L~~l~~~G~i 192 (269)
+...+.+.+.+++||++ +|.. .-+ .++.-.+-+.+.+.+|.++|.|
T Consensus 69 ~~~~~~~~~~~~~lgi~-~d~~~~~~t-~~~~~~~~v~~~f~~L~~~G~i 116 (314)
T cd00812 69 EYNIKKMKEQLKRMGFS-YDWRREFTT-CDPEYYKFTQWLFLKLYEKGLA 116 (314)
T ss_pred HHHHHHHHHHHHHhccc-eeccccccc-CCHHHHHHHHHHHHHHHHCCCE
Confidence 55677888999999985 5742 221 1111234566678899999987
No 318
>KOG3086 consensus Predicted dioxygenase [General function prediction only]
Probab=33.90 E-value=61 Score=28.32 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=23.8
Q ss_pred hHHHHHHHHhhccCCCCCCcEEEEecCCCCC
Q 024292 109 SETLLGRFIKERKQRDPEVEVTVATKFAALP 139 (269)
Q Consensus 109 sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~ 139 (269)
.|...|+.|.++-.+ |+.-++|++-+|++.
T Consensus 163 ~e~~~g~lls~Yi~D-p~NlFvvSSDFCHWG 192 (296)
T KOG3086|consen 163 VEQCYGKLLSKYIKD-PSNLFVVSSDFCHWG 192 (296)
T ss_pred HHHHHHHHHHHHhcC-ccceEEEeccccccc
Confidence 489999999988643 578888999999843
No 319
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=33.86 E-value=3.5e+02 Score=24.30 Aligned_cols=129 Identities=11% Similarity=0.088 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHCCCCeeecc---c-----ccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHH
Q 024292 74 MKAAKAAFDTSLDNGITFFDTA---E-----VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQ 145 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA---~-----~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~ 145 (269)
.++..+....+.+.|+..||-= + .||.|.+ .-.--+.+.+.++...... ..++-|+-|+... ++ +.+
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~--Ll~~~~~~~eiv~avr~~~-~~~~pVsvKiR~g-~~-~~~ 148 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGAT--LLKDPELIYQGAKAMREAV-PAHLPVTVKVRLG-WD-SGE 148 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchH--hhcCHHHHHHHHHHHHHhc-CCCcceEEEEECC-CC-Cch
Confidence 3666666777888999999931 1 2443311 0011344555555443111 1246788887431 22 112
Q ss_pred HHHHHHHHHHHHhCCCccceEEeecCCC---CChHH-HHHHHHHHHHcCCccEEEecCc-CHHHHHHHHHH
Q 024292 146 SVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEG-FIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEK 211 (269)
Q Consensus 146 ~i~~~l~~sL~~L~~dyiDl~~lH~p~~---~~~~~-~~~~L~~l~~~G~ir~iGvSn~-~~~~l~~~~~~ 211 (269)
.. ..+-+.|+..| +|.+.+|.-.. +.... -|+...++++.=.|.=||.-.. +++.++++++.
T Consensus 149 ~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~ 215 (312)
T PRK10550 149 RK-FEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAI 215 (312)
T ss_pred HH-HHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhc
Confidence 22 34555566666 56777886432 11111 3788888888877888888776 77888887653
No 320
>PRK05660 HemN family oxidoreductase; Provisional
Probab=33.83 E-value=3.8e+02 Score=24.67 Aligned_cols=42 Identities=14% Similarity=0.039 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHHcCCc-----cEEEecCcCHHHHHHHHHHHHhcC
Q 024292 175 GNEGFIDGLGDAVEQGLV-----KAVGVSNYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 175 ~~~~~~~~L~~l~~~G~i-----r~iGvSn~~~~~l~~~~~~~~~~~ 216 (269)
+.++++++++.+++.|-- --+|+...+.+.+.+-++.+...+
T Consensus 141 ~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~ 187 (378)
T PRK05660 141 GPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALN 187 (378)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcC
Confidence 356677777777777641 124555556666666666554444
No 321
>KOG3131 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.65 E-value=3.3e+02 Score=23.87 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=65.8
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHc--------CC-ccEEE
Q 024292 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--------GL-VKAVG 196 (269)
Q Consensus 126 R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~--------G~-ir~iG 196 (269)
|++..=.++.+..+.....+.+++.++.|++.|.-. | -...+|++|++. -| |+.+|
T Consensus 25 rG~~~k~~dt~iD~~~v~~~~fq~klensr~kle~S--~-------------Fl~~~lEqLq~~l~~~~~piek~~vclg 89 (281)
T KOG3131|consen 25 RGRHKKESDTLIDCPDVNVEKFQPKLENSRTKLEQS--D-------------FLLVALEQLQQQLEGIRKPIEKIIVCLG 89 (281)
T ss_pred cCCCccccccccCcccccHHHHHHHHHHHHHHHHHH--H-------------HHHHHHHHHhHHHhhhccchhheEEEEe
Confidence 454444667665555677889999999999998531 2 223344444433 24 48899
Q ss_pred ecCcCH-----HHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccC
Q 024292 197 VSNYSE-----KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 197 vSn~~~-----~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~ 257 (269)
+.++.. -++.-++++-+...+.. ++-.-|-|+.+.. =.++.+..|-.|+.--+.+.
T Consensus 90 lG~f~~~~~a~~Qlal~iei~r~fk~~~-~~~s~fDPvf~k~----E~eyLeslG~cvLs~~e~~~ 150 (281)
T KOG3131|consen 90 LGPFSRTYHALHQLALVIEIHRHFKIRD-VEASYFDPVFRKS----EKEYLESLGGCVLSKDEAGK 150 (281)
T ss_pred eccccccccHHHHHHHHHHHHHHhcccc-ceeeeeCcchhhh----HHHHHHhcCCeEeccCcccc
Confidence 988742 45555666544333322 2222344444433 46777788888776655543
No 322
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.65 E-value=3.1e+02 Score=23.54 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEc
Q 024292 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (269)
Q Consensus 144 ~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q 223 (269)
...+.+.+++.++.+|. +++++ .+.........+.++.+.+.+ +..|=+...+.......++.+...++|+..+.
T Consensus 14 ~~~~~~gi~~~a~~~g~---~~~~~-~~~~~~~~~~~~~l~~~~~~~-~dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~ 88 (294)
T cd06316 14 SNAQVRGAKDEFAKLGI---EVVAT-TDAQFDPAKQVADIETTISQK-PDIIISIPVDPVSTAAAYKKVAEAGIKLVFMD 88 (294)
T ss_pred HHHHHHHHHHHHHHcCC---EEEEe-cCCCCCHHHHHHHHHHHHHhC-CCEEEEcCCCchhhhHHHHHHHHcCCcEEEec
Confidence 45678888888888874 33322 222234556667787777654 77776755444334445555555667765543
No 323
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=33.60 E-value=1.1e+02 Score=27.49 Aligned_cols=53 Identities=15% Similarity=0.292 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEcccCCccC----------------CCcchhhHHHHHHHcCCeEEEcc
Q 024292 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIY----------------RKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~----------------~~~~~~~l~~~~~~~gi~via~~ 253 (269)
+.+++.++++..++.++|++++.+...-.. +-+.-.++++..+++|+.++.+-
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v 90 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVIT 90 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEE
Confidence 567788888878888888888866532211 11122369999999999998864
No 324
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=33.55 E-value=3.3e+02 Score=25.50 Aligned_cols=101 Identities=13% Similarity=0.172 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecC-----------------cCHH
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN-----------------YSEK 203 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn-----------------~~~~ 203 (269)
+++.+.+.+.+++..+ |-+|.+.+|.- -.++.++.+++.|++ .|+.+ +=-+
T Consensus 137 ~~t~d~~~~~v~~qa~----~GVdfmTIHaG------V~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~~~~ENply~ 204 (432)
T COG0422 137 DLTEDDFFDTVEKQAE----QGVDFMTIHAG------VLLEYVPRTKRSGRV--TGIVSRGGSIMAAWMLHNHKENPLYE 204 (432)
T ss_pred hCCHHHHHHHHHHHHH----hCCcEEEeehh------hhHHHHHHHHhcCce--eeeeccchHHHHHHHHHcCCcCchhh
Confidence 5677777777777665 45788999963 357888899998855 45432 2236
Q ss_pred HHHHHHHHHHhcCCCeeEEcccCCc---cCCCcc--------hhhHHHHHHHcCCeEEEccc
Q 024292 204 RLRNAYEKLKKRGIPLASNQVNYSL---IYRKPE--------ENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~Q~~~s~---~~~~~~--------~~~l~~~~~~~gi~via~~p 254 (269)
+.+++++++++..+.++.- --+.| .+-+.+ ..+|.+.|.++||+++.=+|
T Consensus 205 ~fd~lleI~k~yDvtlSLG-DglRPG~i~DA~D~aQ~~EL~tlgeL~krA~~~gVQvmvEGP 265 (432)
T COG0422 205 HFDELLEIFKEYDVTLSLG-DGLRPGCIADANDEAQFAELITLGELTKRAWEAGVQVMVEGP 265 (432)
T ss_pred hHHHHHHHHHHhCeeeecc-CCCCCCcccCCccHHHHHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 6777888777655322211 00111 111100 02688889999999998766
No 325
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=33.44 E-value=3.3e+02 Score=24.01 Aligned_cols=114 Identities=11% Similarity=0.048 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCC-C---CChHHHHHHHHHHHH--cCC-ccEEEecCcCHHHHHHHHHHHH
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAG-I---WGNEGFIDGLGDAVE--QGL-VKAVGVSNYSEKRLRNAYEKLK 213 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~-~---~~~~~~~~~L~~l~~--~G~-ir~iGvSn~~~~~l~~~~~~~~ 213 (269)
..+.+.+++.++..+..-| +|=+++-.-. . ...+|-.+.++..++ .|+ .--.|++..+.++..++.+.++
T Consensus 20 ~iD~~~~~~li~~l~~~~G---v~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~ 96 (293)
T PRK04147 20 QIDEQGLRRLVRFNIEKQG---IDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYAT 96 (293)
T ss_pred CcCHHHHHHHHHHHHhcCC---CCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHH
Confidence 4667777777776665444 4555554321 1 345555555544443 244 3467887777777777777788
Q ss_pred hcCCCeeEEcccCCccCCCcchhhHHHH----HHHcCCeEEEcc-cccCCcc
Q 024292 214 KRGIPLASNQVNYSLIYRKPEENGVKAA----CDELGITLIAYC-PIAQDSP 260 (269)
Q Consensus 214 ~~~~~~~~~Q~~~s~~~~~~~~~~l~~~----~~~~gi~via~~-pl~~G~l 260 (269)
+.|..-.++..+|-.- .. +++++++ |..-+++++.|. |...|..
T Consensus 97 ~~Gad~v~v~~P~y~~-~~--~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~ 145 (293)
T PRK04147 97 ELGYDAISAVTPFYYP-FS--FEEICDYYREIIDSADNPMIVYNIPALTGVN 145 (293)
T ss_pred HcCCCEEEEeCCcCCC-CC--HHHHHHHHHHHHHhCCCCEEEEeCchhhccC
Confidence 8887655555554211 11 1245554 445688999986 3334543
No 326
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=33.23 E-value=1.4e+02 Score=28.66 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=9.9
Q ss_pred EEecCcCHHHHHHHHHHHHhcC
Q 024292 195 VGVSNYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 195 iGvSn~~~~~l~~~~~~~~~~~ 216 (269)
+|..+++-+.++.+++.+..+|
T Consensus 97 vgy~~ypddvv~~fv~~a~~~G 118 (468)
T PRK12581 97 LGYRHYADDIVDKFISLSAQNG 118 (468)
T ss_pred cCccCCcchHHHHHHHHHHHCC
Confidence 4444444444444444444444
No 327
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=33.11 E-value=3.7e+02 Score=24.26 Aligned_cols=96 Identities=13% Similarity=0.013 Sum_probs=51.1
Q ss_pred cceEEeecCCCCC--hHHHHHHHHHHHHcCCccEEEecC----cCHHHH-HHHHHHHHhcCCCeeEEcccCC-ccCCCcc
Q 024292 163 VELYQLHWAGIWG--NEGFIDGLGDAVEQGLVKAVGVSN----YSEKRL-RNAYEKLKKRGIPLASNQVNYS-LIYRKPE 234 (269)
Q Consensus 163 iDl~~lH~p~~~~--~~~~~~~L~~l~~~G~ir~iGvSn----~~~~~l-~~~~~~~~~~~~~~~~~Q~~~s-~~~~~~~ 234 (269)
|.-+.+-.-|+.. .....+.++.+..-..++.+|+.+ ..+..+ +++++..+..+.+ .++++.+| +-+...+
T Consensus 143 i~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~-~~~~~h~dh~~Ei~d~ 221 (321)
T TIGR03821 143 INEVILSGGDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQ-TVLVVHINHANEIDAE 221 (321)
T ss_pred CCEEEEeCcccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCc-EEEEeeCCChHhCcHH
Confidence 3334444444432 233566667777777777777753 333333 3344444433322 22233443 2121122
Q ss_pred hhhHHHHHHHcCCeEEEcccccCCc
Q 024292 235 ENGVKAACDELGITLIAYCPIAQDS 259 (269)
Q Consensus 235 ~~~l~~~~~~~gi~via~~pl~~G~ 259 (269)
..+.++.+++.||.+...+++..|+
T Consensus 222 ~~~ai~~L~~~Gi~v~~qtvllkgi 246 (321)
T TIGR03821 222 VADALAKLRNAGITLLNQSVLLRGV 246 (321)
T ss_pred HHHHHHHHHHcCCEEEecceeeCCC
Confidence 2257777888899998888888774
No 328
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=33.10 E-value=1.2e+02 Score=21.40 Aligned_cols=53 Identities=9% Similarity=0.034 Sum_probs=34.5
Q ss_pred HHhCCCccceEEeecCCCCChHHHHHHHHHHHHcC-CccEEEecCc-CHHHHHHHHH
Q 024292 156 FRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG-LVKAVGVSNY-SEKRLRNAYE 210 (269)
Q Consensus 156 ~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G-~ir~iGvSn~-~~~~l~~~~~ 210 (269)
..+.....|++++-..- +.....+.++++++.+ .++-|-+|+. +.....++++
T Consensus 37 ~~~~~~~~d~iiid~~~--~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~ 91 (112)
T PF00072_consen 37 ELLKKHPPDLIIIDLEL--PDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALR 91 (112)
T ss_dssp HHHHHSTESEEEEESSS--SSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHH
T ss_pred HHhcccCceEEEEEeee--ccccccccccccccccccccEEEecCCCCHHHHHHHHH
Confidence 33344458999998642 2245566677777666 7888888876 5566666654
No 329
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=33.07 E-value=56 Score=30.81 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=35.1
Q ss_pred CCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCC--eeecccc
Q 024292 44 SDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAEV 97 (269)
Q Consensus 44 tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin--~~DTA~~ 97 (269)
.|+...+|-||.-++|.. -|...+.. .--+.+.+++...+++|++ |+||+-.
T Consensus 78 ~gf~~~~iiLGGDHLGPn-~Wq~lpa~-eAM~~A~~li~ayV~AGF~kIHLD~Sm~ 131 (426)
T PRK15458 78 LNFPQEALILGGDHLGPN-RWQNLPAA-QAMANADDLIKSYVAAGFKKIHLDCSMS 131 (426)
T ss_pred cCCChhhEEeecCCCCCc-cccCCCHH-HHHHHHHHHHHHHHHcCCceEEecCCCC
Confidence 356666899999887753 24432211 1123588899999999999 7888755
No 330
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.00 E-value=32 Score=36.34 Aligned_cols=75 Identities=12% Similarity=0.198 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHcCCccEE-E-ecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcc
Q 024292 176 NEGFIDGLGDAVEQGLVKAV-G-VSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 176 ~~~~~~~L~~l~~~G~ir~i-G-vSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~ 253 (269)
...++++|.++++.|+|..| | +. +.-.|..-++.| +.-.|-+..|.+++........+.+|+++++|...|-
T Consensus 599 ~~kVl~al~r~kesG~i~Gf~GRLG--DLg~Id~kYDvA----IsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi 672 (1293)
T KOG0996|consen 599 RNKVLDALMRLKESGRIPGFYGRLG--DLGAIDEKYDVA----ISTACARLDYIVVDTIETAQECINFLKKNNLGRATFI 672 (1293)
T ss_pred hhHHHHHHHHHHHcCCCCccccccc--cccccchHHHHH----HHHhccccceEEeccHHHHHHHHHHHHHcCCCceeEE
Confidence 46899999999999988743 2 11 112233333332 2224556666666654433468999999999999988
Q ss_pred ccc
Q 024292 254 PIA 256 (269)
Q Consensus 254 pl~ 256 (269)
+|.
T Consensus 673 ~LD 675 (1293)
T KOG0996|consen 673 ILD 675 (1293)
T ss_pred ehH
Confidence 875
No 331
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=32.94 E-value=2.3e+02 Score=27.03 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhc-C-CC-eeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcc
Q 024292 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR-G-IP-LASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 181 ~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~-~-~~-~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~ 253 (269)
+-...+-+.|-...+|....+++++++.++..+.. . .+ |-+|-+ .++-++..+ ..++++|.+++|.++..+
T Consensus 34 eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e-~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 34 ELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALE-WGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred HHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccH-HHHHHHHHHcCCCEEEec
Confidence 33445667899999999999999999998887753 2 24 666543 233222222 358999999999988665
No 332
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=32.94 E-value=3.4e+02 Score=24.23 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHcCCccEEEecCc-CHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEE
Q 024292 175 GNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (269)
Q Consensus 175 ~~~~~~~~L~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~vi 250 (269)
...++++.| +++..||-+|=+-.| +.+.+..+++.+.+.++|+=+ ++++.... -.++.|.+.+|...
T Consensus 134 ~IKE~vR~~--I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYi------LLD~~~~~-~Fl~Mc~~~~v~~~ 201 (284)
T PF07894_consen 134 HIKEVVRRM--IQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYI------LLDEQNLP-HFLEMCEKLGVNLQ 201 (284)
T ss_pred CHHHHHHHH--HHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEE------EechhcCh-HHHHHHHHCCCChh
Confidence 355555544 457788988888888 789999999988777775433 44444433 38899998877543
No 333
>PRK06256 biotin synthase; Validated
Probab=32.60 E-value=3.7e+02 Score=24.10 Aligned_cols=125 Identities=16% Similarity=0.126 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHHHCCCCeee-cccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 024292 72 RKMKAAKAAFDTSLDNGITFFD-TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~D-TA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~ 150 (269)
.+.++..+.++.+.+.|++.|- .+..++.... --..+-+.++.... +-.+-+.+-.+ ..+++
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~-----~~~~~~e~i~~i~~---~~~i~~~~~~g----~l~~e----- 153 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGK-----EVDQVVEAVKAIKE---ETDLEICACLG----LLTEE----- 153 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCch-----HHHHHHHHHHHHHh---cCCCcEEecCC----cCCHH-----
Confidence 5678999999999999986432 2222222100 01234455555431 11232333232 13333
Q ss_pred HHHHHHHhCCCccceEEeecCCC---------CChHHHHHHHHHHHHcCCccE----EEecCcCHHHHHHHHHHHHhcC
Q 024292 151 LKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGLVKA----VGVSNYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 151 l~~sL~~L~~dyiDl~~lH~p~~---------~~~~~~~~~L~~l~~~G~ir~----iGvSn~~~~~l~~~~~~~~~~~ 216 (269)
.-+-|+..|++.+-+- +.. ++ ...++.+++++.+++.|.--. +|+ +.+.+.+.+.+..+++.+
T Consensus 154 ~l~~LkeaG~~~v~~~-lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~~l~~l~ 229 (336)
T PRK06256 154 QAERLKEAGVDRYNHN-LET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAFFLKELD 229 (336)
T ss_pred HHHHHHHhCCCEEecC-Ccc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHHHHHhCC
Confidence 3334777787655331 111 11 235788999999999996222 344 567788888877776554
No 334
>PRK05660 HemN family oxidoreductase; Provisional
Probab=32.53 E-value=3e+02 Score=25.38 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEee-cCCC--------CC-hHHHHH----HHHHHHHcCCccEEEecCcCH
Q 024292 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGI--------WG-NEGFID----GLGDAVEQGLVKAVGVSNYSE 202 (269)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH-~p~~--------~~-~~~~~~----~L~~l~~~G~ir~iGvSn~~~ 202 (269)
...+.+.+.+.++..+ .|+.|+|.+|.+- .|+. .+ .++.++ +.+.|.+.|. ..+.+|||..
T Consensus 169 pgqt~~~~~~~l~~~~-~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 243 (378)
T PRK05660 169 PDQSLEEALDDLRQAI-ALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAK 243 (378)
T ss_pred CCCCHHHHHHHHHHHH-hcCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccC
Confidence 3578888888888655 4899999998764 2321 11 222232 3345667786 4579999854
No 335
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=32.48 E-value=1.5e+02 Score=23.87 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=8.6
Q ss_pred hHHHHHHHcCCeEEE
Q 024292 237 GVKAACDELGITLIA 251 (269)
Q Consensus 237 ~l~~~~~~~gi~via 251 (269)
.+.+.++++||.+..
T Consensus 116 ~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 116 ELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHTSEEEE
T ss_pred HHHhhhhhhcceEEE
Confidence 366666666655443
No 336
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=32.32 E-value=61 Score=30.48 Aligned_cols=52 Identities=23% Similarity=0.338 Sum_probs=34.7
Q ss_pred CCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCC--eeecccc
Q 024292 44 SDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAEV 97 (269)
Q Consensus 44 tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin--~~DTA~~ 97 (269)
.|+...+|-||.-++|.. -|...+.. .--+.+.+++...+++|++ |+|++-.
T Consensus 74 ~gf~~~~iiLggDHlGPn-~Wq~lpa~-eAM~~A~~li~ayV~AGF~kIHLD~Sm~ 127 (420)
T TIGR02810 74 IGFPRDRLILGGDHLGPN-PWQHLPAD-EAMAKAAALVDAYVEAGFTKIHLDASMG 127 (420)
T ss_pred cCCChhcEEeecCCCCCc-cccCCCHH-HHHHHHHHHHHHHHHcCCceEEecCCCC
Confidence 355666899999887753 24432111 1123478899999999999 7788754
No 337
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=32.08 E-value=3.1e+02 Score=23.16 Aligned_cols=68 Identities=18% Similarity=0.119 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcC------HHHHHHHHHHHHhc
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS------EKRLRNAYEKLKKR 215 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~------~~~l~~~~~~~~~~ 215 (269)
.+.+.-.+-++....+++.||||+=+-. .++..+.+.+..+.+.++-|+ |.|+ .+.+...++.+...
T Consensus 75 ~~~~~~~~ll~~~~~~~~~d~vDiEl~~------~~~~~~~l~~~~~~~~~kvI~-S~H~f~~tp~~~~l~~~~~~~~~~ 147 (228)
T TIGR01093 75 GNEEEYLEELKRAADSPGPDFVDIELFL------PDDAVKELINIAKKGGTKIIM-SYHDFQKTPSWEEIVERLEKALSY 147 (228)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEccC------CHHHHHHHHHHHHHCCCEEEE-eccCCCCCCCHHHHHHHHHHHHHh
Confidence 3444444556666688899999975432 134444454444567788777 5542 34555565555554
Q ss_pred C
Q 024292 216 G 216 (269)
Q Consensus 216 ~ 216 (269)
|
T Consensus 148 g 148 (228)
T TIGR01093 148 G 148 (228)
T ss_pred C
Confidence 4
No 338
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.05 E-value=1.4e+02 Score=26.49 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=38.9
Q ss_pred cCHHHHHHHHHHHHhcCCCeeEEcccCC--c-------------cC----CCcchhhHHHHHHHcCCeEEEcc
Q 024292 200 YSEKRLRNAYEKLKKRGIPLASNQVNYS--L-------------IY----RKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~Q~~~s--~-------------~~----~~~~~~~l~~~~~~~gi~via~~ 253 (269)
++.++++++++..++.++|++++-+... - +. +-++-.++++..+++|+.++.+.
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 4778888888888889999888866432 1 11 11222379999999999999765
No 339
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=32.03 E-value=3.8e+02 Score=24.12 Aligned_cols=130 Identities=13% Similarity=0.169 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccC------CCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHH
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYG------SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV 147 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg------~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i 147 (269)
.++..+..+.+.+.|+..||.--.-. .|........-+.+.+.++..... -++-|+.|+..- |..+....
T Consensus 76 ~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a---~d~pv~vKiR~G-~~~~~~~~ 151 (321)
T PRK10415 76 PKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA---VDVPVTLKIRTG-WAPEHRNC 151 (321)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh---cCCceEEEEEcc-ccCCcchH
Confidence 36666667777889999999521111 110000001123444444443211 133466666321 22221112
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCC---CChHHHHHHHHHHHHcCCccEEEecCc-CHHHHHHHHHH
Q 024292 148 LAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEK 211 (269)
Q Consensus 148 ~~~l~~sL~~L~~dyiDl~~lH~p~~---~~~~~~~~~L~~l~~~G~ir~iGvSn~-~~~~l~~~~~~ 211 (269)
. .+-+.++..|. |.+.+|.... +.-..-|+.+.++++.=.|-=||.-.. +++.++++++.
T Consensus 152 ~-~~a~~le~~G~---d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~ 215 (321)
T PRK10415 152 V-EIAQLAEDCGI---QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDY 215 (321)
T ss_pred H-HHHHHHHHhCC---CEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhc
Confidence 2 23334566675 6667786432 112234788888888777888887765 77888887654
No 340
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=31.90 E-value=1.4e+02 Score=27.18 Aligned_cols=52 Identities=17% Similarity=0.397 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEccc---------------C-----------Ccc-----CCCcchhhHHHHHHHcCCeE
Q 024292 201 SEKRLRNAYEKLKKRGIPLASNQVN---------------Y-----------SLI-----YRKPEENGVKAACDELGITL 249 (269)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~Q~~---------------~-----------s~~-----~~~~~~~~l~~~~~~~gi~v 249 (269)
+.+.++++++..++.++|++++.++ | ... .+-++-.++++..+++|+.+
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv 101 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVKV 101 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCEE
Confidence 5677888888788888888887553 1 111 01122236999999999999
Q ss_pred EEc
Q 024292 250 IAY 252 (269)
Q Consensus 250 ia~ 252 (269)
+.+
T Consensus 102 ~l~ 104 (340)
T cd06597 102 LLW 104 (340)
T ss_pred EEE
Confidence 754
No 341
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=31.84 E-value=2.5e+02 Score=24.06 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.3
Q ss_pred hHHHHHHHcCCeEEEcccccCCc
Q 024292 237 GVKAACDELGITLIAYCPIAQDS 259 (269)
Q Consensus 237 ~l~~~~~~~gi~via~~pl~~G~ 259 (269)
.|..+|++++|.|++-+.|....
T Consensus 161 ~Lk~lA~~~~i~vi~~sQlnr~~ 183 (259)
T PF03796_consen 161 ELKALAKELNIPVIALSQLNREA 183 (259)
T ss_dssp HHHHHHHHHTSEEEEEEEBSGGG
T ss_pred HHHHHHHHcCCeEEEccccChhh
Confidence 58889999999999999887653
No 342
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=31.57 E-value=3.4e+02 Score=23.43 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=16.4
Q ss_pred HHHHHHHHHHCCCCeeecccc
Q 024292 77 AKAAFDTSLDNGITFFDTAEV 97 (269)
Q Consensus 77 ~~~~l~~A~~~Gin~~DTA~~ 97 (269)
..+.++.+-+.|+..++....
T Consensus 18 ~~e~l~~~~~~G~~~VEl~~~ 38 (279)
T TIGR00542 18 WLERLQLAKTCGFDFVEMSVD 38 (279)
T ss_pred HHHHHHHHHHcCCCEEEEecC
Confidence 455778888999999988643
No 343
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=31.56 E-value=2.3e+02 Score=24.44 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCC-ccc-------------------------eEEeecCCC-C---ChHHHHHHHHHHHHcC
Q 024292 141 RLGRQSVLAALKDSLFRLGLS-SVE-------------------------LYQLHWAGI-W---GNEGFIDGLGDAVEQG 190 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d-yiD-------------------------l~~lH~p~~-~---~~~~~~~~L~~l~~~G 190 (269)
+.+...+++.+++.-++|+++ |+| ++.+..|.. . ....+.+.+.+++.+|
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC
Confidence 456667778888777777652 333 333333332 1 2457788889999999
Q ss_pred CccEEEecCcCHHHHHHHHH
Q 024292 191 LVKAVGVSNYSEKRLRNAYE 210 (269)
Q Consensus 191 ~ir~iGvSn~~~~~l~~~~~ 210 (269)
|.+=+|+|.-..++++++
T Consensus 184 --r~viFSSH~m~EvealCD 201 (245)
T COG4555 184 --RAVIFSSHIMQEVEALCD 201 (245)
T ss_pred --cEEEEecccHHHHHHhhh
Confidence 568889998777777643
No 344
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=31.51 E-value=3.6e+02 Score=24.66 Aligned_cols=89 Identities=18% Similarity=0.074 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024292 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~ 152 (269)
+.+++.+.++.+-+.|+..+-+--.||- .+.+.+.+++.++
T Consensus 142 s~~~~~~a~~~l~~~g~~~v~~dli~Gl---------------------------------------Pgqt~~~~~~tl~ 182 (375)
T PRK05628 142 TPGRAVAAAREARAAGFEHVNLDLIYGT---------------------------------------PGESDDDWRASLD 182 (375)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHHhCCCccceEEee-----------------cCCCCChHHHHHHHHHHHHcCCccEEEecCcC
Q 024292 153 DSLFRLGLSSVELYQLH-----------------WAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (269)
Q Consensus 153 ~sL~~L~~dyiDl~~lH-----------------~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~ 201 (269)
..++ |+.++|.+|.+. .|+.....+.++...+.-++.--..+++|||.
T Consensus 183 ~~~~-l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~~ye~s~fa 247 (375)
T PRK05628 183 AALE-AGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDWYEVSNWA 247 (375)
T ss_pred HHHh-cCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCeeeecccc
No 345
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=31.50 E-value=4e+02 Score=24.15 Aligned_cols=82 Identities=10% Similarity=-0.057 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCCccEEEecCcC----HH-HHHHHHHHHHhcCCCeeEEcccCCc-cCCCcchhhHHHHHHHcCCeEE
Q 024292 177 EGFIDGLGDAVEQGLVKAVGVSNYS----EK-RLRNAYEKLKKRGIPLASNQVNYSL-IYRKPEENGVKAACDELGITLI 250 (269)
Q Consensus 177 ~~~~~~L~~l~~~G~ir~iGvSn~~----~~-~l~~~~~~~~~~~~~~~~~Q~~~s~-~~~~~~~~~l~~~~~~~gi~vi 250 (269)
..+.+.++.+.+-+.++.|.++.-. +. .-+++++..+..+.+...+ ...|- -+...+....++.+++.|+.+.
T Consensus 176 ~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~v-sh~nh~~Ei~~~~~~ai~~L~~aGi~v~ 254 (331)
T TIGR00238 176 HELEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLV-THINHCNEITEEFAEAMKKLRTVNVTLL 254 (331)
T ss_pred HHHHHHHHHHHhcCCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEE-ccCCChHhCCHHHHHHHHHHHHcCCEEE
Confidence 3466667777776666656554321 11 1223334344444332221 22221 1111111246677788899999
Q ss_pred EcccccCCc
Q 024292 251 AYCPIAQDS 259 (269)
Q Consensus 251 a~~pl~~G~ 259 (269)
..++|..|.
T Consensus 255 ~qtvLl~gv 263 (331)
T TIGR00238 255 NQSVLLRGV 263 (331)
T ss_pred eecceECCc
Confidence 999999886
No 346
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=31.49 E-value=2.6e+02 Score=25.05 Aligned_cols=75 Identities=23% Similarity=0.247 Sum_probs=42.4
Q ss_pred HHHHHHHcCCccEEEecCc--C-------------HHHHHHHHHHHHhcCCC-eeEEcccCCccCCCcchhhHHHHHHHc
Q 024292 182 GLGDAVEQGLVKAVGVSNY--S-------------EKRLRNAYEKLKKRGIP-LASNQVNYSLIYRKPEENGVKAACDEL 245 (269)
Q Consensus 182 ~L~~l~~~G~ir~iGvSn~--~-------------~~~l~~~~~~~~~~~~~-~~~~Q~~~s~~~~~~~~~~l~~~~~~~ 245 (269)
.+++|++.|. ..|.||-. + .+.+.+.++.+.+.+++ +.++-+-..-.+. .+-.+++++++++
T Consensus 104 ~~~~L~~~gl-~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~-~ei~~l~~~~~~~ 181 (334)
T TIGR02666 104 HAKDLKEAGL-KRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVND-DEIVDLAEFAKER 181 (334)
T ss_pred HHHHHHHcCC-CeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCH-HHHHHHHHHHHhc
Confidence 5677888884 45665522 2 24555666666666665 3332111100111 1123689999999
Q ss_pred CCe--EEEcccccCC
Q 024292 246 GIT--LIAYCPIAQD 258 (269)
Q Consensus 246 gi~--via~~pl~~G 258 (269)
|+. ++-+.|++.+
T Consensus 182 gv~~~~ie~mp~~~~ 196 (334)
T TIGR02666 182 GVTLRFIELMPLGEG 196 (334)
T ss_pred CCeEEEEeccCCCCC
Confidence 875 5567888766
No 347
>PLN02489 homocysteine S-methyltransferase
Probab=31.48 E-value=4e+02 Score=24.21 Aligned_cols=174 Identities=13% Similarity=0.055 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCC---CC--CchHHHHHHHHhhccC-------------------CCCCCcE
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASF---GA--INSETLLGRFIKERKQ-------------------RDPEVEV 129 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~---~~--~~sE~~lG~al~~~~~-------------------~~~R~~v 129 (269)
++...++=+..+++|-+.|-|.....+...- +. ...+++.-.+++-... ...+.++
T Consensus 54 Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (335)
T PLN02489 54 PHLIRKVHLDYLEAGADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRPI 133 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEecccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCc
Confidence 4666777777889999999887654431000 00 0113333333331000 0013467
Q ss_pred EEEecCCCCCC--------------CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcC--Ccc
Q 024292 130 TVATKFAALPW--------------RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVK 193 (269)
Q Consensus 130 ~I~tK~~~~~~--------------~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G--~ir 193 (269)
+|+-=+|+... ..+.+.+.+...+.++.|--.-+|++.+--. ....|+..+++-+++.+ +--
T Consensus 134 ~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~--~~l~E~~a~~~~~~~~~~~~p~ 211 (335)
T PLN02489 134 LVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETI--PNKLEAQAYVELLEEENIKIPA 211 (335)
T ss_pred EEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc--CChHHHHHHHHHHHHcCCCCeE
Confidence 88888886321 1456888888888888875456999999854 23455555555555553 444
Q ss_pred EEEecCc------CHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHc-CCeEEEcc
Q 024292 194 AVGVSNY------SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDEL-GITLIAYC 253 (269)
Q Consensus 194 ~iGvSn~------~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~-gi~via~~ 253 (269)
.|.++.. +...++++++.++.. ..++++-+++. .+..- ..+++..+.. ++.+++|-
T Consensus 212 ~iS~t~~~~~~l~~G~~~~~~~~~~~~~-~~~~~iGiNC~--~p~~~-~~~l~~l~~~~~~pl~vyP 274 (335)
T PLN02489 212 WISFNSKDGVNVVSGDSLLECASIADSC-KKVVAVGINCT--PPRFI-HGLILSIRKVTSKPIVVYP 274 (335)
T ss_pred EEEEEeCCCCccCCCCcHHHHHHHHHhc-CCceEEEecCC--CHHHH-HHHHHHHHhhcCCcEEEEC
Confidence 4555431 113344555444322 23556555554 22111 1344444443 56666654
No 348
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=31.47 E-value=3.2e+02 Score=23.08 Aligned_cols=129 Identities=14% Similarity=0.118 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l 151 (269)
.++++....++.+++.-=...=.-++.|..-. ..+..+...++.... |.-+||=++... . ...
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T----~~~~~m~~vl~~l~~---~gl~FvDS~T~~----~------s~a 133 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFT----SDREAMRWVLEVLKE---RGLFFVDSRTTP----R------SVA 133 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHH----C-HHHHHHHHHHHHH---TT-EEEE-S--T----T-------SH
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCcccc----CCHHHHHHHHHHHHH---cCCEEEeCCCCc----c------cHH
Confidence 45789999999999863332222233443211 127788877777652 577888566532 1 123
Q ss_pred HHHHHHhCCCcc--ceEEeecCCCCChHHHHH-HHHHHHHcCCccEEEecCc-CHHHHHHHHHHHHhcCC
Q 024292 152 KDSLFRLGLSSV--ELYQLHWAGIWGNEGFID-GLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 152 ~~sL~~L~~dyi--Dl~~lH~p~~~~~~~~~~-~L~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~ 217 (269)
.+.-+++|+.+. |+|+=|.++.......++ +....+++|.+-.||=..- +.+.+++.+...+..|+
T Consensus 134 ~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh~~p~Tl~~L~~~~~~l~~~gi 203 (213)
T PF04748_consen 134 PQVAKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGHPRPETLEALEEWLPELEAQGI 203 (213)
T ss_dssp HHHHHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE-SCCHHHHHHHHHHHHHHCTE
T ss_pred HHHHHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEcCCHHHHHHHHHHHhHHhhCCE
Confidence 344556666533 655444433222222222 3334466787777774432 44555555555555553
No 349
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=31.46 E-value=3.5e+02 Score=23.55 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeec-CCC---CChHHHHHHHHHHHHc---CCccEEEecCcCHHHHHHHHHHHH
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHW-AGI---WGNEGFIDGLGDAVEQ---GLVKAVGVSNYSEKRLRNAYEKLK 213 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~-p~~---~~~~~~~~~L~~l~~~---G~ir~iGvSn~~~~~l~~~~~~~~ 213 (269)
..+.+.+++.++..++ .| +|-+++-. -.. ...+|-.+.++...+. ...-.+|++..+.+...+..+.+.
T Consensus 17 ~iD~~~~~~~i~~l~~-~G---v~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~ 92 (284)
T cd00950 17 SVDFDALERLIEFQIE-NG---TDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAE 92 (284)
T ss_pred CcCHHHHHHHHHHHHH-cC---CCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHH
Confidence 4667777777775554 45 45555442 222 3455544444444433 334568999888888888888888
Q ss_pred hcCCCeeEEcccCCccCCCcchhhHHHHH----HHcCCeEEEcccc-cCCc
Q 024292 214 KRGIPLASNQVNYSLIYRKPEENGVKAAC----DELGITLIAYCPI-AQDS 259 (269)
Q Consensus 214 ~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~----~~~gi~via~~pl-~~G~ 259 (269)
..|..-.++..++..- .. +++++++. +..+++++.|..- ..|.
T Consensus 93 ~~G~d~v~~~~P~~~~--~~-~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~ 140 (284)
T cd00950 93 KAGADAALVVTPYYNK--PS-QEGLYAHFKAIAEATDLPVILYNVPGRTGV 140 (284)
T ss_pred HcCCCEEEEcccccCC--CC-HHHHHHHHHHHHhcCCCCEEEEEChhHhCC
Confidence 8887655555554321 11 22466654 4458999999643 2454
No 350
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=31.24 E-value=3.5e+02 Score=24.85 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeec-CCC------------CChHH-----HHHHHHHHHHcCCccEEEecCcC
Q 024292 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHW-AGI------------WGNEG-----FIDGLGDAVEQGLVKAVGVSNYS 201 (269)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~-p~~------------~~~~~-----~~~~L~~l~~~G~ir~iGvSn~~ 201 (269)
...+.+.+++.++..+ .|+.++|.+|.+.- |.. .+.++ ...+.+.|.+.|. .++++|||.
T Consensus 165 Pgqt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa 242 (370)
T PRK06294 165 PTQSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYA 242 (370)
T ss_pred CCCCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-Ceeeeeeee
Confidence 3568888888888765 58999999998763 321 11122 2234566777887 458899985
No 351
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=31.07 E-value=3e+02 Score=22.62 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCC---CChHHHHHHHHHHHHcCCccEEEecCcC--HHHHHHHHHHHHhcCCC
Q 024292 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYS--EKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 144 ~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~---~~~~~~~~~L~~l~~~G~ir~iGvSn~~--~~~l~~~~~~~~~~~~~ 218 (269)
.+.....+...++..+.+- +-+.+--++. .....+.+.+..+++.|- .+++.++. ...++.+.+ ++
T Consensus 97 ~~~~~~~~~~~l~~~~~~~-~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l~~------~~ 167 (240)
T cd01948 97 DPDFLDRLLELLAETGLPP-RRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYLKR------LP 167 (240)
T ss_pred CcHHHHHHHHHHHHcCCCH-HHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHHHh------CC
Confidence 3445677778888887764 2222222222 334568899999999994 46666653 333444433 35
Q ss_pred eeEEcccCCccCCCcc-------hhhHHHHHHHcCCeEEEcc
Q 024292 219 LASNQVNYSLIYRKPE-------ENGVKAACDELGITLIAYC 253 (269)
Q Consensus 219 ~~~~Q~~~s~~~~~~~-------~~~l~~~~~~~gi~via~~ 253 (269)
|+++=+..+.+..-.. -..++..|+..|+.+++-.
T Consensus 168 ~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 168 VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 7776665554433211 1258889999999988754
No 352
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=31.04 E-value=2.2e+02 Score=24.94 Aligned_cols=46 Identities=17% Similarity=0.073 Sum_probs=35.2
Q ss_pred CccceEEeecCCC----CChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHH
Q 024292 161 SSVELYQLHWAGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (269)
Q Consensus 161 dyiDl~~lH~p~~----~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~ 208 (269)
..-|+++|..|.. ....++++-|.+|+++| +.|=+.+|+...+.+.
T Consensus 156 ~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg--~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 156 QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG--KTVLMVTHDLGLVMAY 205 (254)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCcHHhHhh
Confidence 4568899988754 23578999999999998 5577788987776665
No 353
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=30.97 E-value=4e+02 Score=25.73 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024292 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
++.+|.++.+.++..+++..+.+.+++. + . ..+...+++.|+.+..
T Consensus 405 S~~~L~~Li~~IK~~~V~~IF~Epq~~~--~-~--~~l~~IA~e~Gv~V~~ 450 (479)
T TIGR03772 405 SLADRRRLTRTIENLKVPAVFLEPNLAA--R-S--TTLNEIADELGVRVCA 450 (479)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCC--c-h--HHHHHHHHHcCCcEEe
Confidence 5678888888888777777777666652 1 1 1266677788887644
No 354
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=30.97 E-value=2.1e+02 Score=29.89 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHHHhCC--------------------------CccceEEeecCCC----CChHHHHHHHHHHHHcC
Q 024292 141 RLGRQSVLAALKDSLFRLGL--------------------------SSVELYQLHWAGI----WGNEGFIDGLGDAVEQG 190 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~--------------------------dyiDl~~lH~p~~----~~~~~~~~~L~~l~~~G 190 (269)
+..+..+.+.++..|+.++. ....++++..|.. .....+|+...++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 45567788888888887753 3356777877754 23578999999999999
Q ss_pred CccEEEecCcCHHHHHHHHHH
Q 024292 191 LVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 191 ~ir~iGvSn~~~~~l~~~~~~ 211 (269)
+ +|=+++|+-++.+.+...
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhh
Confidence 8 899999998888887543
No 355
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=30.25 E-value=4e+02 Score=23.86 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCC-----CChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCC
Q 024292 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGI-----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 144 ~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~-----~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~ 218 (269)
.+.+++.+.+.+++.++|.+=++..-.-.+ .+..+.+++|++..+++.-. .++..+-.... -..|
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AA--l~~g-- 200 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAA--LEAG-- 200 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHH--HHTT--
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHH--HHCC--
Confidence 456788999999999998655554443332 12446889999998875432 12222222211 1233
Q ss_pred eeEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024292 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 219 ~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
+.++..-=+.....+ ++.++++++|+.++.
T Consensus 201 ~~fvN~tP~~~a~~P---~l~ela~~~gvpi~G 230 (295)
T PF07994_consen 201 VPFVNGTPSNIADDP---ALVELAEEKGVPIAG 230 (295)
T ss_dssp EEEEE-SSSTTTTSH---HHHHHHHHHTEEEEE
T ss_pred CCeEeccCccccCCH---HHHHHHHHcCCCeec
Confidence 333322222222222 599999999999874
No 356
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=30.14 E-value=3.5e+02 Score=23.07 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=15.9
Q ss_pred hHHHHHHHc-CCeEEEccc
Q 024292 237 GVKAACDEL-GITLIAYCP 254 (269)
Q Consensus 237 ~l~~~~~~~-gi~via~~p 254 (269)
++++.++++ |+.|.+|..
T Consensus 199 ~~v~~~~~~~G~~v~vWTV 217 (237)
T cd08585 199 PFVTLARALLGMPVIVWTV 217 (237)
T ss_pred HHHHHHHHhcCCcEEEEeC
Confidence 589999999 999999974
No 357
>PRK09989 hypothetical protein; Provisional
Probab=30.14 E-value=2.5e+02 Score=24.03 Aligned_cols=95 Identities=8% Similarity=-0.036 Sum_probs=0.0
Q ss_pred HHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcC----------------HHHHHHHHHHHHhcC
Q 024292 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS----------------EKRLRNAYEKLKKRG 216 (269)
Q Consensus 153 ~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~----------------~~~l~~~~~~~~~~~ 216 (269)
+.++++|.|+|.+.. +...+.+++-+.|++.--+--.-+.+++.++ .+.++++++.++..|
T Consensus 22 ~~~~~~Gfd~VEl~~---~~~~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~lg 98 (258)
T PRK09989 22 AAARKAGFDAVEFLF---PYDYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDLALEYALALN 98 (258)
T ss_pred HHHHHcCCCEEEECC---cccCCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHHHHhC
Q ss_pred CCeeEEcccCCccCCCcch---------hhHHHHHHHcCCeEE
Q 024292 217 IPLASNQVNYSLIYRKPEE---------NGVKAACDELGITLI 250 (269)
Q Consensus 217 ~~~~~~Q~~~s~~~~~~~~---------~~l~~~~~~~gi~vi 250 (269)
.+...+...+-+-....++ ..+.+.+++.||.+.
T Consensus 99 ~~~v~v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 141 (258)
T PRK09989 99 CEQVHVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGKRIL 141 (258)
T ss_pred cCEEEECccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEE
No 358
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=30.03 E-value=68 Score=30.17 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=34.8
Q ss_pred CCcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCC--eeecccc
Q 024292 44 SDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAEV 97 (269)
Q Consensus 44 tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin--~~DTA~~ 97 (269)
.|+...+|-||.-++|.. -|...+. +.--+.+.+++...+++|++ |+|++-.
T Consensus 75 ~gf~~~~iiLggDHlGPn-~Wq~~pa-~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ 128 (421)
T PRK15052 75 VGFPRERIILGGDHLGPN-CWQQEPA-DAAMEKSVELVKAYVRAGFSKIHLDASMS 128 (421)
T ss_pred cCCChhcEEeecCCCCCc-cccCCCH-HHHHHHHHHHHHHHHHcCCceEEecCCCC
Confidence 355666899999887753 2543211 11123478899999999999 7788754
No 359
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=29.97 E-value=3.5e+02 Score=23.07 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCC-ccceEEeecCCCCChHHHHHHHHHHHHcCC-ccEEEecCcCH---------------------HHH
Q 024292 149 AALKDSLFRLGLS-SVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSE---------------------KRL 205 (269)
Q Consensus 149 ~~l~~sL~~L~~d-yiDl~~lH~p~~~~~~~~~~~L~~l~~~G~-ir~iGvSn~~~---------------------~~l 205 (269)
+++.+.+.|++-+ ..-|+-+-.....+..++...|.-|+.-|- |-.+|+---++ ..+
T Consensus 3 eql~~TFa~aK~enknaLvtfiTaG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i 82 (268)
T KOG4175|consen 3 EQLSETFARAKSENKNALVTFITAGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSI 82 (268)
T ss_pred hHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHH
Q ss_pred HHHHHHHHhcCCC-eeEEcccCCccCCCc------------------------chhhHHHHHHHcCCeEEE
Q 024292 206 RNAYEKLKKRGIP-LASNQVNYSLIYRKP------------------------EENGVKAACDELGITLIA 251 (269)
Q Consensus 206 ~~~~~~~~~~~~~-~~~~Q~~~s~~~~~~------------------------~~~~l~~~~~~~gi~via 251 (269)
-++++.++..|+. |...+..|||+.+.- |...+..+|++|||.++.
T Consensus 83 ~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvp 153 (268)
T KOG4175|consen 83 IEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVP 153 (268)
T ss_pred HHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEE
No 360
>PRK00915 2-isopropylmalate synthase; Validated
Probab=29.82 E-value=3.8e+02 Score=25.98 Aligned_cols=69 Identities=20% Similarity=0.218 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCC-ccEEEecCcCHHHHHHHHHHHHhcC
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRG 216 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~ 216 (269)
++.+.-. .+-+.|.++|+|+|++-+ |.. .+.-++.++++.+.++ .+..+++......++.+.+.....+
T Consensus 23 ~s~e~K~-~ia~~L~~~Gv~~IE~G~---p~~--s~~d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~ 92 (513)
T PRK00915 23 LTVEEKL-QIAKQLERLGVDVIEAGF---PAS--SPGDFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAE 92 (513)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEEcC---CCC--ChHHHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCC
Confidence 4444333 344457777777776632 211 1112344444433333 4555555444555666655433333
No 361
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=29.78 E-value=4.3e+02 Score=24.24 Aligned_cols=92 Identities=11% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCC-ccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccC
Q 024292 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (269)
Q Consensus 148 ~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~ 226 (269)
+..+-+.|.++|+++|++- +| ...+.-++.++++.+.+. .+..+++..+.+.++.+.+. .++.+.+..
T Consensus 25 k~~ia~~L~~~Gv~~IEvG---~p--~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~------g~~~i~i~~ 93 (365)
T TIGR02660 25 KLAIARALDEAGVDELEVG---IP--AMGEEERAVIRAIVALGLPARLMAWCRARDADIEAAARC------GVDAVHISI 93 (365)
T ss_pred HHHHHHHHHHcCCCEEEEe---CC--CCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcC------CcCEEEEEE
Q ss_pred Cc--------cCCCcchh-----hHHHHHHHcCCeEE
Q 024292 227 SL--------IYRKPEEN-----GVKAACDELGITLI 250 (269)
Q Consensus 227 s~--------~~~~~~~~-----~l~~~~~~~gi~vi 250 (269)
+. +....++. +.+++++++|+.+.
T Consensus 94 ~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 94 PVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
No 362
>PRK04132 replication factor C small subunit; Provisional
Probab=29.74 E-value=2.6e+02 Score=29.13 Aligned_cols=96 Identities=14% Similarity=0.146 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHHhCCC--ccceEEeecCCCCChHHHHHHHHHHHHc--CCccEEEecCcCHHHHHHHHHHHHhcCCC
Q 024292 143 GRQSVLAALKDSLFRLGLS--SVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d--yiDl~~lH~p~~~~~~~~~~~L~~l~~~--G~ir~iGvSn~~~~~l~~~~~~~~~~~~~ 218 (269)
+-+.|++.+++....-... .-=+++|...|.+. .+...+|.+..++ +.++.|.+||.....+..+.+.
T Consensus 609 gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt-~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSR------- 680 (846)
T PRK04132 609 GINVIREKVKEFARTKPIGGASFKIIFLDEADALT-QDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR------- 680 (846)
T ss_pred cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC-HHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhh-------
Confidence 4566776666544322221 12488888877654 4678889999996 8999999999765555444333
Q ss_pred eeEEcccCCccCCCcchhhHHHHHHHcCCe
Q 024292 219 LASNQVNYSLIYRKPEENGVKAACDELGIT 248 (269)
Q Consensus 219 ~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~ 248 (269)
|..+.+.++....-...+...|++.|+.
T Consensus 681 --C~~i~F~~ls~~~i~~~L~~I~~~Egi~ 708 (846)
T PRK04132 681 --CAIFRFRPLRDEDIAKRLRYIAENEGLE 708 (846)
T ss_pred --ceEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3334444444322111244556666654
No 363
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=29.69 E-value=2.2e+02 Score=20.72 Aligned_cols=49 Identities=16% Similarity=0.267 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCccEEE--------ecCc---CHHHHHHHHHHHHhcCCC-eeEEcccCCccCCCc
Q 024292 180 IDGLGDAVEQGLVKAVG--------VSNY---SEKRLRNAYEKLKKRGIP-LASNQVNYSLIYRKP 233 (269)
Q Consensus 180 ~~~L~~l~~~G~ir~iG--------vSn~---~~~~l~~~~~~~~~~~~~-~~~~Q~~~s~~~~~~ 233 (269)
.+.-.+|+++|+++++- +|=| +.+.+.+++.. .| +....++..++.+.+
T Consensus 28 ~~~a~eLq~~G~~~~lWr~~G~~~n~~Ifdv~d~~eLh~lL~s-----LPL~p~m~i~VtpL~~Hp 88 (91)
T PF02426_consen 28 KARAQELQRQGKWRHLWRVVGRYANVSIFDVEDNDELHELLSS-----LPLFPYMDIEVTPLARHP 88 (91)
T ss_pred HHHHHHHHHCCeeeEEEEecCCcceEEEEECCCHHHHHHHHHh-----CCCccceeeeEEecccCC
Confidence 34567899999999864 2333 45666666554 33 345555666665543
No 364
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=29.61 E-value=2.7e+02 Score=23.95 Aligned_cols=27 Identities=37% Similarity=0.394 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCC-CeeEEcccCCccCC
Q 024292 205 LRNAYEKLKKRGI-PLASNQVNYSLIYR 231 (269)
Q Consensus 205 l~~~~~~~~~~~~-~~~~~Q~~~s~~~~ 231 (269)
|+++.+.+++.+. ++.++...|-.++|
T Consensus 83 l~~l~~~l~~~~~g~IAsv~GRyyaMDR 110 (223)
T PF06415_consen 83 LEELEEKLAEIGIGRIASVSGRYYAMDR 110 (223)
T ss_dssp HHHHHHHHHHHTCTEEEEEEECCCCT--
T ss_pred HHHHHHHHHhhCCceEEEEeceeeeecc
Confidence 4444443333332 44555555554444
No 365
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=29.61 E-value=1.8e+02 Score=24.47 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHCCCCeeec
Q 024292 75 KAAKAAFDTSLDNGITFFDT 94 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DT 94 (269)
|...+.++.|++.|...|++
T Consensus 14 ENTl~af~~A~~~Gad~iE~ 33 (226)
T cd08568 14 ENTLEAFKKAIEYGADGVEL 33 (226)
T ss_pred cchHHHHHHHHHcCcCEEEE
Confidence 78888999999999998874
No 366
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=29.58 E-value=3.9e+02 Score=23.51 Aligned_cols=132 Identities=10% Similarity=0.070 Sum_probs=68.3
Q ss_pred ChhhHHHHHHHHHHHHH-CCCCeeecccccCCCCCCCCCch--HHHHHHHHhhccCCCCCCcEEEEecCCC---------
Q 024292 70 DDRKMKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINS--ETLLGRFIKERKQRDPEVEVTVATKFAA--------- 137 (269)
Q Consensus 70 ~~~~~~~~~~~l~~A~~-~Gin~~DTA~~Yg~g~~~~~~~s--E~~lG~al~~~~~~~~R~~v~I~tK~~~--------- 137 (269)
+.+|.+...+.++..++ .|++-|=..-.-|-+.+ .... ++++-.+++.... |-.++..+-...
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~--Ls~eEr~~~~~~~~~~~~~---~~~viagvg~~~t~~ai~~a~ 93 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFL--LSTEEKKQVLEIVAEEAKG---KVKLIAQVGSVNTAEAQELAK 93 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCEEEECCCcccccc--CCHHHHHHHHHHHHHHhCC---CCCEEecCCCCCHHHHHHHHH
Confidence 45778889999999999 99987644332222111 1111 2344444444331 233443332210
Q ss_pred -------------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCH
Q 024292 138 -------------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (269)
Q Consensus 138 -------------~~--~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~ 202 (269)
.| ...+.+.+.+-+++..+..+ +.+++.+.|......=..+.+.+|.+...|..|=-|+.+.
T Consensus 94 ~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~---lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvgiK~s~~d~ 170 (293)
T PRK04147 94 YATELGYDAISAVTPFYYPFSFEEICDYYREIIDSAD---NPMIVYNIPALTGVNLSLDQFNELFTLPKVIGVKQTAGDL 170 (293)
T ss_pred HHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCC---CCEEEEeCchhhccCCCHHHHHHHhcCCCEEEEEeCCCCH
Confidence 11 12345666666666666532 4677777665433222234444555556666666666666
Q ss_pred HHHHHHH
Q 024292 203 KRLRNAY 209 (269)
Q Consensus 203 ~~l~~~~ 209 (269)
.++.++.
T Consensus 171 ~~~~~~~ 177 (293)
T PRK04147 171 YQLERIR 177 (293)
T ss_pred HHHHHHH
Confidence 5555543
No 367
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=29.55 E-value=2.9e+02 Score=22.76 Aligned_cols=56 Identities=27% Similarity=0.294 Sum_probs=41.7
Q ss_pred HHHHhCCCc----cceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHH
Q 024292 154 SLFRLGLSS----VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (269)
Q Consensus 154 sL~~L~~dy----iDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~ 210 (269)
.|++.|..- +|-=++-|.++...+++.+.++++++.| ++-+=+||-+...+..+.+
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~g-i~v~vvSNn~e~RV~~~~~ 81 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAG-IKVVVVSNNKESRVARAAE 81 (175)
T ss_pred HHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcC-CEEEEEeCCCHHHHHhhhh
Confidence 555656432 4556777776677889999999999998 4556689989888888754
No 368
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=29.39 E-value=4.5e+02 Score=24.09 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCC----CChHHHHHHHHHHHHcCC-ccEEEecCc------CHHHHHHHHH
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGL-VKAVGVSNY------SEKRLRNAYE 210 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~----~~~~~~~~~L~~l~~~G~-ir~iGvSn~------~~~~l~~~~~ 210 (269)
..++.|+.+++...+ - |-=-.+++..-+. .....+..-+++|+++|. |-.||+=+| +.+....++.
T Consensus 168 ~gpd~I~~aF~~Are-a--dP~AkL~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~~~a~~ 244 (345)
T COG3693 168 TGPDYIKLAFHIARE-A--DPDAKLVINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKMRAALL 244 (345)
T ss_pred CccHHHHHHHHHHHh-h--CCCceEEeecccccCChHHHHHHHHHHHHHHHCCCCccceeeeeeecCCCCCHHHHHHHHH
Confidence 346677777766665 2 2112233332211 124567889999999999 999998765 4566666666
Q ss_pred HHHhcCCCeeEEcccCCccC
Q 024292 211 KLKKRGIPLASNQVNYSLIY 230 (269)
Q Consensus 211 ~~~~~~~~~~~~Q~~~s~~~ 230 (269)
...+.|+++.+-.+..+...
T Consensus 245 ~~~k~Gl~i~VTELD~~~~~ 264 (345)
T COG3693 245 KFSKLGLPIYVTELDMSDYT 264 (345)
T ss_pred HHhhcCCCceEEEeeeeccC
Confidence 55566888888877777644
No 369
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=29.36 E-value=3.9e+02 Score=23.42 Aligned_cols=158 Identities=14% Similarity=0.113 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHCCCCeeecc---cccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 024292 74 MKAAKAAFDTSLDNGITFFDTA---EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA---~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~ 150 (269)
.++..+..+.+.+.|+..||.- +.+..+ ......+.+.+-+.++..... -++-|.-|+.+ +. +.+ ..
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~vr~~---~~~Pv~vKl~~---~~--~~~-~~ 170 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKAVKKA---TDVPVIVKLTP---NV--TDI-VE 170 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHHHHhc---cCCCEEEEeCC---Cc--hhH-HH
Confidence 4677788888889999999862 221110 000112366777777766421 25678888853 11 122 23
Q ss_pred HHHHHHHhCCCccceEE------eecCCCC--------------ChHHHHHHHHHHHHcCCccEEEecCc-CHHHHHHHH
Q 024292 151 LKDSLFRLGLSSVELYQ------LHWAGIW--------------GNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAY 209 (269)
Q Consensus 151 l~~sL~~L~~dyiDl~~------lH~p~~~--------------~~~~~~~~L~~l~~~G~ir~iGvSn~-~~~~l~~~~ 209 (269)
+-+.+...|.|.|++.- +|..... ...-.++.+.++++.=.+.-||+... +++.+.+++
T Consensus 171 ~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l 250 (296)
T cd04740 171 IARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEFL 250 (296)
T ss_pred HHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH
Confidence 33456778888877641 1210000 01235677778877666888998886 788888887
Q ss_pred HHHHhcCCCeeEEcccCCccC-C---CcchhhHHHHHHHcCC
Q 024292 210 EKLKKRGIPLASNQVNYSLIY-R---KPEENGVKAACDELGI 247 (269)
Q Consensus 210 ~~~~~~~~~~~~~Q~~~s~~~-~---~~~~~~l~~~~~~~gi 247 (269)
+. | .+.+|+-=.++. + ..-..++.++.+++|.
T Consensus 251 ~~----G--Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 251 MA----G--ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred Hc----C--CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 53 3 466665433333 1 1112356677777764
No 370
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=29.21 E-value=4.5e+02 Score=24.01 Aligned_cols=128 Identities=10% Similarity=0.019 Sum_probs=73.5
Q ss_pred hhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 024292 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~ 150 (269)
.++.++..++++.+.+.|+..|.-. | |+.-=+..-.+++-. +++.+ -.+.|.|-. .-.+.+.+
T Consensus 45 ~~~~e~~~~ii~~~~~~g~~~v~~~---G-GEPll~~~~~~il~~-~~~~g-----~~~~i~TNG----~ll~~~~~--- 107 (378)
T PRK05301 45 ELSTEEWIRVLREARALGALQLHFS---G-GEPLLRKDLEELVAH-ARELG-----LYTNLITSG----VGLTEARL--- 107 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEE---C-CccCCchhHHHHHHH-HHHcC-----CcEEEECCC----ccCCHHHH---
Confidence 4567889999999999999888643 3 321000011222222 22221 245566654 23444432
Q ss_pred HHHHHHHhCCCccceEEeecCCC--------C--ChHHHHHHHHHHHHcCCcc--EEEecCcCHHHHHHHHHHHHhcCCC
Q 024292 151 LKDSLFRLGLSSVELYQLHWAGI--------W--GNEGFIDGLGDAVEQGLVK--AVGVSNYSEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 151 l~~sL~~L~~dyiDl~~lH~p~~--------~--~~~~~~~~L~~l~~~G~ir--~iGvSn~~~~~l~~~~~~~~~~~~~ 218 (269)
+.|...|+++|- +-|+.++. . ..+.++++++.|++.|.-- .+-++..+.+++.++++.+.+.|++
T Consensus 108 --~~L~~~g~~~v~-iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv~ 184 (378)
T PRK05301 108 --AALKDAGLDHIQ-LSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGAD 184 (378)
T ss_pred --HHHHHcCCCEEE-EEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCCC
Confidence 335556655432 12333321 1 2567889999999988421 2235667889999999999888865
No 371
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=29.09 E-value=1.7e+02 Score=27.64 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCcc-----EEEecCcCH------HHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCe
Q 024292 180 IDGLGDAVEQGLVK-----AVGVSNYSE------KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (269)
Q Consensus 180 ~~~L~~l~~~G~ir-----~iGvSn~~~------~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~ 248 (269)
++.|.+|.++|+|. +++...... ..-.++.+.++..++.-.+.=..+-..+|... -+....++.||+
T Consensus 289 lD~LreLekEG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a--~m~keiE~~GiP 366 (431)
T TIGR01918 289 VDVLRDYEKEGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGA--TMVKEIERAGIP 366 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHH--HHHHHHHHcCCC
Confidence 78999999999996 555543311 22334444455555554444445555555444 277788889999
Q ss_pred EEEcccc
Q 024292 249 LIAYCPI 255 (269)
Q Consensus 249 via~~pl 255 (269)
++.+..+
T Consensus 367 vv~~~~~ 373 (431)
T TIGR01918 367 VVHMCTV 373 (431)
T ss_pred EEEEeec
Confidence 9887653
No 372
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=29.07 E-value=4.6e+02 Score=24.08 Aligned_cols=24 Identities=4% Similarity=0.025 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHCCCCeeeccc
Q 024292 73 KMKAAKAAFDTSLDNGITFFDTAE 96 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~ 96 (269)
+.++..++++..-+.||..|+...
T Consensus 20 s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 20 TVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeC
Confidence 457888899998899999999753
No 373
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=29.06 E-value=82 Score=28.61 Aligned_cols=26 Identities=35% Similarity=0.291 Sum_probs=14.8
Q ss_pred HHHHHHHHH-HHHCCCCeeecccccCC
Q 024292 75 KAAKAAFDT-SLDNGITFFDTAEVYGS 100 (269)
Q Consensus 75 ~~~~~~l~~-A~~~Gin~~DTA~~Yg~ 100 (269)
..+....++ ...+||+..=-|-.++.
T Consensus 27 ~~a~~~~d~~~~a~GiTT~~~a~~~~~ 53 (325)
T cd01306 27 DIALAAHDRQLAAAGITTVFDALSFGD 53 (325)
T ss_pred HHHHHHHHHHHHhcCcccceeeeEecc
Confidence 344444444 45789996655555553
No 374
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=29.02 E-value=3.7e+02 Score=25.03 Aligned_cols=88 Identities=19% Similarity=0.155 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024292 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~ 152 (269)
+.+++.+.++.+-+.|+..+-.-=+||- .+.+.+.+++.++
T Consensus 149 ~~~~~~~ai~~l~~~G~~~v~~dlI~Gl---------------------------------------Pgqt~e~~~~tl~ 189 (400)
T PRK07379 149 RVKDIFAAVDLIHQAGIENFSLDLISGL---------------------------------------PHQTLEDWQASLE 189 (400)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHHhCCCccceEEee-----------------cCCCCChHHHHHHHHHHHHcCCccEEEecCc
Q 024292 153 DSLFRLGLSSVELYQLH-----------------WAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (269)
Q Consensus 153 ~sL~~L~~dyiDl~~lH-----------------~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~ 200 (269)
..++ |+.++|-+|.+. .|+.....+.++...+.-++.--.++++|||
T Consensus 190 ~~~~-l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnf 253 (400)
T PRK07379 190 AAIA-LNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYEHYEISNY 253 (400)
T ss_pred HHHc-CCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCceeeeehe
No 375
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=29.01 E-value=1.7e+02 Score=24.58 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCc
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~ 200 (269)
.+++.+.+.+ +.++ +|++|||.... .+.++.|.+...-..++.+.+.+.
T Consensus 64 ~~~~~i~~~~----~~~~---~d~vQLHg~e~---~~~~~~l~~~~~~~iik~i~v~~~ 112 (210)
T PRK01222 64 ASDEEIDEIV----ETVP---LDLLQLHGDET---PEFCRQLKRRYGLPVIKALRVRSA 112 (210)
T ss_pred CCHHHHHHHH----HhcC---CCEEEECCCCC---HHHHHHHHhhcCCcEEEEEecCCH
Confidence 3455444443 3444 68899998632 333444443322356888888753
No 376
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=28.94 E-value=2.8e+02 Score=25.02 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCccceEEeecCCC-------------CChHHHHHHHHHHHHcCCccEEE-ecCcCHHHHHHHHHHHH
Q 024292 149 AALKDSLFRLGLSSVELYQLHWAGI-------------WGNEGFIDGLGDAVEQGLVKAVG-VSNYSEKRLRNAYEKLK 213 (269)
Q Consensus 149 ~~l~~sL~~L~~dyiDl~~lH~p~~-------------~~~~~~~~~L~~l~~~G~ir~iG-vSn~~~~~l~~~~~~~~ 213 (269)
..+...|+.|- ++-|.+..-.|+. ..+++.-+.++.+.++|.++-|| .|.-+|++|+.+.+..+
T Consensus 233 ~~m~~~l~~ls-~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~vnIvGGCCGTTPeHIraia~~v~ 310 (311)
T COG0646 233 DEMRPHLRELS-RIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGGVNIVGGCCGTTPEHIRAIAEAVK 310 (311)
T ss_pred HHHHHHHHHHH-hccCceEEEeCCCCCCcccCCccccCCCHHHHHHHHHHHHHhCCceeeccccCCCHHHHHHHHHHhc
No 377
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=28.92 E-value=4.2e+02 Score=23.58 Aligned_cols=69 Identities=17% Similarity=0.144 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHHHhCC-----C---------------------ccceEEeecCCC----CChHHHHHHHHHHHHcC
Q 024292 141 RLGRQSVLAALKDSLFRLGL-----S---------------------SVELYQLHWAGI----WGNEGFIDGLGDAVEQG 190 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~-----d---------------------yiDl~~lH~p~~----~~~~~~~~~L~~l~~~G 190 (269)
+.....+++.++.-|+|+.+ + ..||+.|..|-. ...+-.-++..+++++|
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 45667777888888888753 1 234444444422 12345566778899999
Q ss_pred CccEEEecCcCHHHHHHHHHH
Q 024292 191 LVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 191 ~ir~iGvSn~~~~~l~~~~~~ 211 (269)
..|=+|+|.-++++++++.
T Consensus 181 --atIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 181 --ATIIFSSHRMEHVEELCDR 199 (300)
T ss_pred --CEEEEecchHHHHHHHhhh
Confidence 5688999998888888654
No 378
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=28.76 E-value=92 Score=29.77 Aligned_cols=65 Identities=22% Similarity=0.301 Sum_probs=42.7
Q ss_pred HHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCe--eEEcccC-----CccCCC-c-----------------------
Q 024292 185 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL--ASNQVNY-----SLIYRK-P----------------------- 233 (269)
Q Consensus 185 ~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~--~~~Q~~~-----s~~~~~-~----------------------- 233 (269)
..+..|-|+.=+-..|....-. ++-++.|+.+ +|.|++| |+++.. +
T Consensus 38 aIq~AG~Vk~rk~~~~a~SDWM---~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDa 114 (528)
T COG4108 38 AIQEAGTVKGRKSGKHAKSDWM---EIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDA 114 (528)
T ss_pred hhhhcceeeeccCCcccccHHH---HHHHhcCceEEeeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEec
Confidence 4567788888777777432222 2245567654 7789988 566542 1
Q ss_pred ------chhhHHHHHHHcCCeEEEc
Q 024292 234 ------EENGVKAACDELGITLIAY 252 (269)
Q Consensus 234 ------~~~~l~~~~~~~gi~via~ 252 (269)
....|++.|+-+|++|+.+
T Consensus 115 AKGiE~qT~KLfeVcrlR~iPI~TF 139 (528)
T COG4108 115 AKGIEPQTLKLFEVCRLRDIPIFTF 139 (528)
T ss_pred ccCccHHHHHHHHHHhhcCCceEEE
Confidence 1125999999999999986
No 379
>PRK00588 rnpA ribonuclease P; Reviewed
Probab=28.73 E-value=2.4e+02 Score=21.50 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=41.5
Q ss_pred CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC---CccceEEeecCCC--CChHHHHHHHHHHHH
Q 024292 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (269)
Q Consensus 125 ~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~---dyiDl~~lH~p~~--~~~~~~~~~L~~l~~ 188 (269)
+|=-+.|+-|+|. ...+..+++.+.++.+.+.- ..-|++++..+.. .+..++-+.|+.+.+
T Consensus 43 ~R~G~~VsKKvG~---AV~RNRiKR~lRE~~R~~~~~l~~~~~vVviaR~~~~~~~~~~l~~~l~~ll~ 108 (118)
T PRK00588 43 PRVGLIIAKSVGS---AVERHRVARRLRHVARPILKELHPSDRVVIRALPSSRHVSSARLEQQLRCGLR 108 (118)
T ss_pred CEEEEEEeeecCc---hhHHHHHHHHHHHHHHHhhhccCCCCEEEEecCcccccCCHHHHHHHHHHHHH
Confidence 3678899999873 57788888888888877643 2345666577653 455666666666544
No 380
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=28.72 E-value=3e+02 Score=23.47 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccC
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYG 99 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg 99 (269)
.++..++.+.+++.|..|+=|+.-|+
T Consensus 135 ~e~i~~a~~~~~~agadfIKTsTG~~ 160 (221)
T PRK00507 135 DEEKVKACEIAKEAGADFVKTSTGFS 160 (221)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCCCC
Confidence 45666677777777777777776664
No 381
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=28.65 E-value=4.5e+02 Score=23.90 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcC
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG 190 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G 190 (269)
.+++.|.+.+++. ...|...+.+..-+.|+ .+.+.+.+.++.++++.
T Consensus 79 l~~eeI~~~a~~~-~~~G~~~v~l~~G~~p~-~~~~~~~e~i~~Ik~~~ 125 (351)
T TIGR03700 79 MSLEEIVARVKEA-YAPGATEVHIVGGLHPN-LPFEWYLDMIRTLKEAY 125 (351)
T ss_pred CCHHHHHHHHHHH-HHCCCcEEEEecCCCCC-CCHHHHHHHHHHHHHHC
Confidence 4566666666543 45677777776555554 34555666666666654
No 382
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=28.65 E-value=1.9e+02 Score=21.09 Aligned_cols=57 Identities=18% Similarity=0.101 Sum_probs=31.3
Q ss_pred HHHhCCCccceEEeecCCCCChHHHHHHHHHHH---HcCCccEEEecCcCHHHHHHHHHH
Q 024292 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAV---EQGLVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 155 L~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~---~~G~ir~iGvSn~~~~~l~~~~~~ 211 (269)
|..|.-.++=|++.+......-...+..|.++. ++..++.||||.-+.+.+.++.+.
T Consensus 20 l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 79 (124)
T PF00578_consen 20 LSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE 79 (124)
T ss_dssp GGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred HHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence 344433444444444311111123344444443 455789999999998877777554
No 383
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=28.46 E-value=62 Score=24.40 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCC
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGS 100 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~ 100 (269)
.+.+.+....+++.|++.||.+..|..
T Consensus 76 ~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 76 HGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp HHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred hhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 367788888889999999999998854
No 384
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=28.44 E-value=2.5e+02 Score=22.86 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~ 153 (269)
++...-.+++|-+.||.+|=.|..||. +-..+-+.+... =++++.|.-... ..-+-..+.+.+++
T Consensus 13 ~~tle~a~erA~elgik~~vVAS~tG~--------tA~k~lemveg~------lkvVvVthh~Gf-~e~g~~e~~~E~~~ 77 (186)
T COG1751 13 DETLEIAVERAKELGIKHIVVASSTGY--------TALKALEMVEGD------LKVVVVTHHAGF-EEKGTQEMDEEVRK 77 (186)
T ss_pred HHHHHHHHHHHHhcCcceEEEEecccH--------HHHHHHHhcccC------ceEEEEEeeccc-ccCCceecCHHHHH
Confidence 355666778888999999999999996 122222333221 246666654221 12334456677888
Q ss_pred HHHHhCCC
Q 024292 154 SLFRLGLS 161 (269)
Q Consensus 154 sL~~L~~d 161 (269)
-|+..|.+
T Consensus 78 ~L~erGa~ 85 (186)
T COG1751 78 ELKERGAK 85 (186)
T ss_pred HHHHcCce
Confidence 88888864
No 385
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.38 E-value=3.9e+02 Score=23.04 Aligned_cols=11 Identities=27% Similarity=0.289 Sum_probs=6.2
Q ss_pred HHhCCCccceE
Q 024292 156 FRLGLSSVELY 166 (269)
Q Consensus 156 ~~L~~dyiDl~ 166 (269)
+++|.|+|++.
T Consensus 31 ~~~G~~~iEl~ 41 (283)
T PRK13209 31 KTAGFDFVEMS 41 (283)
T ss_pred HHcCCCeEEEe
Confidence 45566666653
No 386
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=28.36 E-value=3.2e+02 Score=23.80 Aligned_cols=53 Identities=25% Similarity=0.329 Sum_probs=36.1
Q ss_pred ccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCC
Q 024292 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 162 yiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~ 218 (269)
.+|++..-. ++....+.+....+.|+---+|...++.++.+++.+.+++.+++
T Consensus 68 ~~DvVIdfT----~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~ 120 (266)
T TIGR00036 68 DPDVLIDFT----TPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIA 120 (266)
T ss_pred CCCEEEECC----ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCcc
Confidence 467665543 34666777777777777777777777777777777777665543
No 387
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=28.34 E-value=5e+02 Score=24.35 Aligned_cols=68 Identities=9% Similarity=0.010 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCccceEEeecCC-------C-CChHHHHHHHHHHHHcCCc-----cEEEecCcCHHHHHHHHHHHHhc
Q 024292 149 AALKDSLFRLGLSSVELYQLHWAG-------I-WGNEGFIDGLGDAVEQGLV-----KAVGVSNYSEKRLRNAYEKLKKR 215 (269)
Q Consensus 149 ~~l~~sL~~L~~dyiDl~~lH~p~-------~-~~~~~~~~~L~~l~~~G~i-----r~iGvSn~~~~~l~~~~~~~~~~ 215 (269)
...-+.|+++|+++|.+=+=..-+ . ...+++.++++.+++.|.- --+|+-+.+.+.+++.++.+...
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l 220 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVY 220 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhC
Confidence 334445556666655543222111 1 2456777777777777731 12466666777777777766554
Q ss_pred C
Q 024292 216 G 216 (269)
Q Consensus 216 ~ 216 (269)
+
T Consensus 221 ~ 221 (430)
T PRK08208 221 R 221 (430)
T ss_pred C
Confidence 4
No 388
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=28.15 E-value=3.7e+02 Score=22.70 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=16.1
Q ss_pred hHHHHHHHcCCeEEEccc
Q 024292 237 GVKAACDELGITLIAYCP 254 (269)
Q Consensus 237 ~l~~~~~~~gi~via~~p 254 (269)
.+++.|++.|+.+.+|..
T Consensus 196 ~~v~~~~~~Gl~v~vwTV 213 (237)
T cd08583 196 KLIEKLNKAGIYVYVYTI 213 (237)
T ss_pred HHHHHHHHCCCEEEEEeC
Confidence 599999999999999964
No 389
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=28.13 E-value=2.9e+02 Score=21.59 Aligned_cols=91 Identities=19% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCc---CHHHHHHHHHHHHhcCCCeeEEcc
Q 024292 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 148 ~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~---~~~~l~~~~~~~~~~~~~~~~~Q~ 224 (269)
+.-+...|+.-|.+-+| .......+.+-+...+-.+..||+|.. +...+.++.+.+++.+..-..+-+
T Consensus 18 k~iv~~~l~~~GfeVi~---------LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~viv 88 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVN---------LGVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYV 88 (134)
T ss_pred HHHHHHHHHHCCCEEEE---------CCCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEe
Q ss_pred cCCccCCCcchhhHHHHHHHcCC
Q 024292 225 NYSLIYRKPEENGVKAACDELGI 247 (269)
Q Consensus 225 ~~s~~~~~~~~~~l~~~~~~~gi 247 (269)
-=++.-+.....+..+..++.|+
T Consensus 89 GG~~vi~~~d~~~~~~~l~~~Gv 111 (134)
T TIGR01501 89 GGNLVVGKQDFPDVEKRFKEMGF 111 (134)
T ss_pred cCCcCcChhhhHHHHHHHHHcCC
No 390
>PLN02610 probable methionyl-tRNA synthetase
Probab=28.11 E-value=2.9e+02 Score=28.58 Aligned_cols=46 Identities=11% Similarity=-0.029 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCcc
Q 024292 146 SVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (269)
Q Consensus 146 ~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir 193 (269)
.+.+.+++.+++||+++ |.|.-. .++.-.+-+.+.+.+|+++|.|-
T Consensus 88 ~~~~~~~~~~~~l~i~~-D~f~rT-~~~~h~~~vq~~f~~L~~~G~Iy 133 (801)
T PLN02610 88 KYHAIHKEVYDWFDISF-DKFGRT-STPQQTEICQAIFKKLMENNWLS 133 (801)
T ss_pred HHHHHHHHHHHHcCCcc-ccCccC-CCHHHHHHHHHHHHHHHHCCCEE
Confidence 44567788999999985 744322 12223567888899999999864
No 391
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=28.06 E-value=3.6e+02 Score=22.63 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=10.7
Q ss_pred hHHHHHHHc-CCeEEE
Q 024292 237 GVKAACDEL-GITLIA 251 (269)
Q Consensus 237 ~l~~~~~~~-gi~via 251 (269)
++.+.|+++ |+.++.
T Consensus 143 g~~~~~~~~~~~~~~~ 158 (275)
T cd06320 143 GFTEAIKKASGIEVVA 158 (275)
T ss_pred HHHHHHhhCCCcEEEE
Confidence 577778887 777653
No 392
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.03 E-value=2.3e+02 Score=24.28 Aligned_cols=92 Identities=10% Similarity=0.061 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHH-HHHHcCCccEEEecCc-CHHHHHHHHHHHHhcCCCe
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLG-DAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~-~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~~~ 219 (269)
.+++...+-+ +.|.+-|+..+.+=+ -. ....+.++.|. +..++.-=-.||+-+. ++++++.+++. |..|
T Consensus 24 ~~~~~a~~~~-~al~~gGi~~iEiT~---~t-p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~a----GA~F 94 (222)
T PRK07114 24 ADVEVAKKVI-KACYDGGARVFEFTN---RG-DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQL----GANF 94 (222)
T ss_pred CCHHHHHHHH-HHHHHCCCCEEEEeC---CC-CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHc----CCCE
Confidence 3455444433 466667766555432 11 12234444443 2223321135888876 88888887654 4455
Q ss_pred eEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024292 220 ASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 220 ~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
.+ +|. ... +++++|+++||.++.
T Consensus 95 iV-----sP~---~~~-~v~~~~~~~~i~~iP 117 (222)
T PRK07114 95 IV-----TPL---FNP-DIAKVCNRRKVPYSP 117 (222)
T ss_pred EE-----CCC---CCH-HHHHHHHHcCCCEeC
Confidence 44 222 122 599999999998874
No 393
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=28.02 E-value=1.6e+02 Score=26.53 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEcccCCccC-C-------C----cchhhHHHHHHHcCCeEEEcc
Q 024292 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIY-R-------K----PEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~-~-------~----~~~~~l~~~~~~~gi~via~~ 253 (269)
+.++++++++..++.++|++++.+...-.. . + +.-.++++.++++|+.++.+-
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISI 86 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 667778888877888888888777642111 1 1 122369999999999988754
No 394
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=28.01 E-value=4.5e+02 Score=24.65 Aligned_cols=106 Identities=22% Similarity=0.145 Sum_probs=56.9
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----hHHHHHHHH
Q 024292 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (269)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~-----~~~~~~~L~ 184 (269)
|+.|-++|++...+.+.+-++|.|=+.. ..--+.+..-+++. ++++ ++++.+|.|.... .+.++++|-
T Consensus 71 ~~kL~~~I~~~~~~~~p~~I~V~ttC~~---~~IGdDi~~v~~~~-~~~~---~~vi~v~t~gf~g~~~~G~~~a~~al~ 143 (427)
T cd01971 71 EDRLRELIKSTLSIIDADLFVVLTGCIA---EIIGDDVGAVVSEF-QEGG---APIVYLETGGFKGNNYAGHEIVLKAII 143 (427)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCcH---HHhhcCHHHHHHHh-hhcC---CCEEEEECCCcCcccccHHHHHHHHHH
Confidence 7777788877543332455667666532 22223333333333 3333 6899999887522 233344443
Q ss_pred H-HHH------cCCccEEEecC-cC---HHHHHHHHHHHHhcCCCeeEE
Q 024292 185 D-AVE------QGLVKAVGVSN-YS---EKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 185 ~-l~~------~G~ir~iGvSn-~~---~~~l~~~~~~~~~~~~~~~~~ 222 (269)
+ +.. .+.|--||..+ .+ +..++++.++++..|+.+.++
T Consensus 144 ~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 144 DQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred HHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 2 222 24577888643 22 244556666666777766554
No 395
>PRK10426 alpha-glucosidase; Provisional
Probab=27.96 E-value=3.1e+02 Score=27.47 Aligned_cols=87 Identities=14% Similarity=0.256 Sum_probs=56.3
Q ss_pred CccceEEeecCCCCChHHHHHHHHHHHHc----------CCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEccc-CC--
Q 024292 161 SSVELYQLHWAGIWGNEGFIDGLGDAVEQ----------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN-YS-- 227 (269)
Q Consensus 161 dyiDl~~lH~p~~~~~~~~~~~L~~l~~~----------G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~-~s-- 227 (269)
..+|+|++..++ ..++++.+.+|.=. |.. +|..+ +.+.+.++++..++.++|++++-++ +.
T Consensus 175 ~~~d~y~~~G~~---~~~vi~~yt~ltGr~p~~P~Wal~G~~--~g~~~-~~~~v~~v~~~~r~~~IP~d~i~lddw~~~ 248 (635)
T PRK10426 175 DKATLRFECADT---YISLLEKLTALFGRQPELPDWAYDGVT--LGIQG-GTEVVQKKLDTMRNAGVKVNGIWAQDWSGI 248 (635)
T ss_pred CCeeEEEEeCCC---HHHHHHHHHHhhCCCCCCChhhccCcc--ccccC-CHHHHHHHHHHHHHcCCCeeEEEEeccccc
Confidence 578998888764 46677766665411 221 23322 4567888888889999999987443 11
Q ss_pred --------c-----cCC--CcchhhHHHHHHHcCCeEEEcc
Q 024292 228 --------L-----IYR--KPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 228 --------~-----~~~--~~~~~~l~~~~~~~gi~via~~ 253 (269)
. +++ -++-.++++..+++|+.++++-
T Consensus 249 ~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i 289 (635)
T PRK10426 249 RMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYI 289 (635)
T ss_pred ccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEE
Confidence 0 011 1222369999999999998874
No 396
>PRK14847 hypothetical protein; Provisional
Probab=27.72 E-value=4e+02 Score=24.35 Aligned_cols=109 Identities=13% Similarity=0.158 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCC----ccEEEecCcCHHHHHHHHHHHHhcCC
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~----ir~iGvSn~~~~~l~~~~~~~~~~~~ 217 (269)
++.+ =+-.+-+.|.++|+|.|.+ -+|. .-++-.++..++.+.++ ++-.++|....+.++..++.....+.
T Consensus 51 fs~e-eKl~IA~~L~~lGVd~IEv---G~Pa--~s~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~ 124 (333)
T PRK14847 51 MDGA-RKLRLFEQLVAVGLKEIEV---AFPS--ASQTDFDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGSPR 124 (333)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEe---eCCC--CCHHHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCCCC
Confidence 3443 2345666789999877664 3342 12334677777777764 66777777778888888776432222
Q ss_pred CeeEEcccCCccCC------Ccch-----hhHHHHHHHcCC---e---EEEccccc
Q 024292 218 PLASNQVNYSLIYR------KPEE-----NGVKAACDELGI---T---LIAYCPIA 256 (269)
Q Consensus 218 ~~~~~Q~~~s~~~~------~~~~-----~~l~~~~~~~gi---~---via~~pl~ 256 (269)
+..-+-++-|.++. ..++ .+.+.++++++. + .+.++|-.
T Consensus 125 ~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~ED 180 (333)
T PRK14847 125 AIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPET 180 (333)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeec
Confidence 22222233332221 1111 146778888855 2 36776654
No 397
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=27.61 E-value=2e+02 Score=27.05 Aligned_cols=58 Identities=7% Similarity=0.123 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCCc
Q 024292 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDS 259 (269)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G~ 259 (269)
+.+.++.+.+..++ +++...+..+-||+-.-++-..+.+.|+++|+-++.=..++.+.
T Consensus 148 d~~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~ 205 (409)
T KOG0053|consen 148 DVDDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPY 205 (409)
T ss_pred chhhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCccc
Confidence 34444444443332 24455666666666655444457777777777777777776663
No 398
>PRK06233 hypothetical protein; Provisional
Probab=27.57 E-value=1.6e+02 Score=27.23 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=40.0
Q ss_pred HHHHHHhhccCCCCCCcEEEEecCCCCCC----C--CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHH
Q 024292 112 LLGRFIKERKQRDPEVEVTVATKFAALPW----R--LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGD 185 (269)
Q Consensus 112 ~lG~al~~~~~~~~R~~v~I~tK~~~~~~----~--~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~ 185 (269)
++-++++..+ +++.|.+.+|.-.+ . .+.+.+ -..|.+++ +|.|+|...+. ..+-++.|.+
T Consensus 225 ~~N~~~~~~p-----~d~~i~~H~C~Gn~~~~~~~~g~y~~i----~~~l~~~~---vd~~~lE~~~~--r~~~~~~L~~ 290 (372)
T PRK06233 225 VINKALADLP-----EDLTVTTHICRGNFKSTYLFSGGYEPV----AKYLGQLN---YDGFFLEYDND--RSGSFEPLKQ 290 (372)
T ss_pred HHHHHHhCCC-----cCCEEEEEeeCCCCCCcccccCcHHHH----HHHHHhCC---CCEEEEecCCC--ccCccchHHH
Confidence 4555666554 68889999985211 1 123333 34455665 45566665321 1233344444
Q ss_pred HHHc--CCccEEEecCc
Q 024292 186 AVEQ--GLVKAVGVSNY 200 (269)
Q Consensus 186 l~~~--G~ir~iGvSn~ 200 (269)
+... +|.-.+||-+.
T Consensus 291 ~~~~~~~k~v~lGvid~ 307 (372)
T PRK06233 291 IWNNRDNVRIVLGLITS 307 (372)
T ss_pred hhccCCCCEEEeeeecC
Confidence 5332 56777887654
No 399
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=27.34 E-value=5.4e+02 Score=24.38 Aligned_cols=147 Identities=15% Similarity=0.164 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHC-CCCeeecccccCCCCCCCCCchHH----HHHHHHh-hccCCCCCCcEEEEecCCCCCCCCCHHH
Q 024292 73 KMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSET----LLGRFIK-ERKQRDPEVEVTVATKFAALPWRLGRQS 146 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~-Gin~~DTA~~Yg~g~~~~~~~sE~----~lG~al~-~~~~~~~R~~v~I~tK~~~~~~~~~~~~ 146 (269)
+.+...+.+...++. +-.. +-.|+.... +. .+.+.+. ..+.....++|+|++=.
T Consensus 105 p~~~~~~~~~~~~~~~~~~~---~~~y~~~~G------~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~----------- 164 (459)
T COG1167 105 PLEALRRALARVLRNYGASL---ALQYGPTAG------LPELREAIAAYLLARRGISCEPEQIVITSGA----------- 164 (459)
T ss_pred CHHHHHHHHHHHHhhcchhh---hhcCCCCCC------cHHHHHHHHHHHHHhcCCccCcCeEEEeCCH-----------
Confidence 345666666666542 3331 223444222 22 3444444 44433334677777653
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecC----cCHHHHHHHHHHHHhcCCCeeEE
Q 024292 147 VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN----YSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 147 i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn----~~~~~l~~~~~~~~~~~~~~~~~ 222 (269)
..+++-.++-| ++.=|.+.+..|.. ..++.-+...| ++.++|.. .+++.++++++. ...++.++
T Consensus 165 -q~al~l~~~~l-~~pGd~v~vE~PtY------~~~~~~~~~~g-~~~~~vp~d~~G~~~e~le~~~~~---~~~k~~y~ 232 (459)
T COG1167 165 -QQALDLLLRLL-LDPGDTVLVEDPTY------PGALQALEALG-ARVIPVPVDEDGIDPEALEEALAQ---WKPKAVYV 232 (459)
T ss_pred -HHHHHHHHHHh-CCCCCEEEEcCCCc------HHHHHHHHHcC-CcEEecCCCCCCCCHHHHHHHHhh---cCCcEEEE
Confidence 46666444444 45568899988864 22333333333 56677654 356777776443 23444444
Q ss_pred cccC----CccCCCcchhhHHHHHHHcCCeEEE
Q 024292 223 QVNY----SLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 223 Q~~~----s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
...+ -.......+..|+++|+++++-||-
T Consensus 233 ~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIE 265 (459)
T COG1167 233 TPTFQNPTGVTMSLERRKALLALAEKYDVLIIE 265 (459)
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEe
Confidence 3333 2222222233689999999988883
No 400
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=27.19 E-value=3e+02 Score=22.69 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=0.0
Q ss_pred CCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCc--cceEEeecCCCCC-
Q 024292 99 GSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSS--VELYQLHWAGIWG- 175 (269)
Q Consensus 99 g~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dy--iDl~~lH~p~~~~- 175 (269)
|++.- |..+.+.|.+.+ .++++.-=. .+.+++.+++.+...++.+.-.+ .-++++-.+....
T Consensus 43 G~~~l------e~~~a~~ia~~~-----a~~~~ld~~----~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~ 107 (178)
T PF14606_consen 43 GNGKL------EPEVADLIAEID-----ADLIVLDCG----PNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAG 107 (178)
T ss_dssp CCCS--------HHHHHHHHHS-------SEEEEEES----HHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTT
T ss_pred Ccccc------CHHHHHHHhcCC-----CCEEEEEee----cCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcccc
Q ss_pred -------------hHHHHHHHHHHHHcC
Q 024292 176 -------------NEGFIDGLGDAVEQG 190 (269)
Q Consensus 176 -------------~~~~~~~L~~l~~~G 190 (269)
.+.+-+++++|+++|
T Consensus 108 ~~~~~~~~~~~~~~~~~r~~v~~l~~~g 135 (178)
T PF14606_consen 108 YFDNSRGETVEEFREALREAVEQLRKEG 135 (178)
T ss_dssp TS--TTS--HHHHHHHHHHHHHHHHHTT
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHcC
No 401
>PLN02231 alanine transaminase
Probab=27.18 E-value=5.9e+02 Score=24.76 Aligned_cols=49 Identities=31% Similarity=0.382 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHcC-CccEEEecC--------cCHHHHHHHHHHHHhcCCCeeEEcc
Q 024292 176 NEGFIDGLGDAVEQG-LVKAVGVSN--------YSEKRLRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 176 ~~~~~~~L~~l~~~G-~ir~iGvSn--------~~~~~l~~~~~~~~~~~~~~~~~Q~ 224 (269)
.+++-+++++.+.+| ++|.|=++| ++.+.+++++++|++.++.+..-.+
T Consensus 255 ~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEv 312 (534)
T PLN02231 255 ISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEV 312 (534)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 444444455545555 678777776 3568899999998888765444333
No 402
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=27.13 E-value=3.8e+02 Score=22.58 Aligned_cols=74 Identities=23% Similarity=0.134 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEE
Q 024292 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 144 ~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~ 222 (269)
...+.+.+++.++.+| +++.++......+.+...+.++.+... ++-.|=+.+.+.+... .+..+...++|+.++
T Consensus 14 ~~~~~~gi~~~a~~~g---~~~~~~~~~~~~~~~~~~~~i~~~~~~-~vdgiI~~~~~~~~~~-~~~~~~~~giPvV~~ 87 (268)
T cd06306 14 WLSVNYGMVEEAKRLG---VSLKLLEAGGYPNLAKQIAQLEDCAAW-GADAILLGAVSPDGLN-EILQQVAASIPVIAL 87 (268)
T ss_pred HHHHHHHHHHHHHHcC---CEEEEecCCCCCCHHHHHHHHHHHHHc-CCCEEEEcCCChhhHH-HHHHHHHCCCCEEEe
Confidence 4567778888888777 355555332112345556677777665 4666666655444333 233345556665443
No 403
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=27.11 E-value=1.4e+02 Score=22.57 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=21.7
Q ss_pred HHHHHHHHHhCCCccceEEeecCCCC--ChHHHHHHHHHHHHcC
Q 024292 149 AALKDSLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQG 190 (269)
Q Consensus 149 ~~l~~sL~~L~~dyiDl~~lH~p~~~--~~~~~~~~L~~l~~~G 190 (269)
..+.+.|+.+....+|.+++..++.. ...+....++.|.+.|
T Consensus 52 ~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g 95 (137)
T cd00338 52 PGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG 95 (137)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC
Confidence 34444444444455666666666552 2334555555555544
No 404
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=27.00 E-value=1.5e+02 Score=26.66 Aligned_cols=53 Identities=17% Similarity=0.289 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEccc-CC--------------c-cCC--CcchhhHHHHHHHcCCeEEEcc
Q 024292 201 SEKRLRNAYEKLKKRGIPLASNQVN-YS--------------L-IYR--KPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~Q~~-~s--------------~-~~~--~~~~~~l~~~~~~~gi~via~~ 253 (269)
+.+.++++++..++.++|++++.+. ++ . +++ -++-.++++..+++|+.++.+-
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i 91 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYI 91 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 6788888888888888998887664 10 0 111 1222379999999999988653
No 405
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=26.97 E-value=1.7e+02 Score=25.33 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=16.1
Q ss_pred hHHHHHHHcCCeEEEccc
Q 024292 237 GVKAACDELGITLIAYCP 254 (269)
Q Consensus 237 ~l~~~~~~~gi~via~~p 254 (269)
.+++.++++|+.|.+|..
T Consensus 219 ~~v~~~~~~G~~v~vWTV 236 (258)
T cd08573 219 AYVRYWRARGIRVIAWTV 236 (258)
T ss_pred HHHHHHHHCCCEEEEEec
Confidence 589999999999999975
No 406
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=26.93 E-value=3.5e+02 Score=22.07 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024292 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~ 152 (269)
+.+++.++++.+++.|++.|.....-.+ ..+.+...-+..+ ++.|..= .-.+++.+...+
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~--------~~~~i~~l~~~~~------~~~iGag-----~v~~~~~~~~a~- 73 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPG--------ALEAIRALRKEFP------EALIGAG-----TVLTPEQADAAI- 73 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChh--------HHHHHHHHHHHCC------CCEEEEE-----eCCCHHHHHHHH-
Confidence 4588999999999999999987654333 2555544443332 3433311 123455444433
Q ss_pred HHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHH
Q 024292 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (269)
Q Consensus 153 ~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~ 210 (269)
.+|.|++ |.|.. ..++.++ .++.|.---+|++ +++++.++.+
T Consensus 74 ----~~Ga~~i-----~~p~~--~~~~~~~---~~~~~~~~i~gv~--t~~e~~~A~~ 115 (190)
T cd00452 74 ----AAGAQFI-----VSPGL--DPEVVKA---ANRAGIPLLPGVA--TPTEIMQALE 115 (190)
T ss_pred ----HcCCCEE-----EcCCC--CHHHHHH---HHHcCCcEECCcC--CHHHHHHHHH
Confidence 3677665 66642 2333333 3344555567888 4566666654
No 407
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=26.85 E-value=3.7e+02 Score=22.31 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=16.3
Q ss_pred hHHHHHHHcCCeEEEccc
Q 024292 237 GVKAACDELGITLIAYCP 254 (269)
Q Consensus 237 ~l~~~~~~~gi~via~~p 254 (269)
++++.|+++|+.|.+|..
T Consensus 190 ~~v~~~~~~g~~v~~wTv 207 (229)
T cd08562 190 EQVKALKDAGYKLLVYTV 207 (229)
T ss_pred HHHHHHHHCCCEEEEEeC
Confidence 599999999999999965
No 408
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=26.79 E-value=2.4e+02 Score=26.38 Aligned_cols=85 Identities=16% Similarity=0.130 Sum_probs=45.2
Q ss_pred ccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHH
Q 024292 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (269)
Q Consensus 162 yiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~ 241 (269)
.+|++.+|.-...|.++..++.++..+.=. .-+=+++.+++.++++++.+...+ |-..-.. ..+.+ .+.++
T Consensus 69 ~~D~Ialr~~S~DPae~fa~~vk~V~~a~~-~PLIL~~~D~evl~aale~~~~~k--pLL~aAt----~eNyk--~m~~l 139 (386)
T PF03599_consen 69 GADMIALRLESGDPAEEFAKAVKKVAEAVD-VPLILCGCDPEVLKAALEACAGKK--PLLYAAT----EENYK--AMAAL 139 (386)
T ss_dssp E-SEEEEE-GGGSTHHHHHHHHHHHHHC-S-SEEEEESSHHHHHHHHHHHTTTS----EEEEEB----TTTHH--HHHHH
T ss_pred cccEEEEEecCCChHHHHHHHHHHHHHhcC-CCEEEEeCCHHHHHHHHHHhCcCC--cEEeEcC----HHHHH--HHHHH
Confidence 467777776432224666777776666433 233344448888888877754322 2111000 11111 58888
Q ss_pred HHHcCCeEEEcccc
Q 024292 242 CDELGITLIAYCPI 255 (269)
Q Consensus 242 ~~~~gi~via~~pl 255 (269)
|+++|..+++.+|.
T Consensus 140 A~~y~~pl~v~sp~ 153 (386)
T PF03599_consen 140 AKEYGHPLIVSSPI 153 (386)
T ss_dssp HHHCT-EEEEE-SS
T ss_pred HHHcCCeEEEEecc
Confidence 88888888888865
No 409
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=26.77 E-value=1.8e+02 Score=26.52 Aligned_cols=53 Identities=11% Similarity=0.205 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEcccCCcc------------CCCcchhhHHHHHHHcCCeEEEcc
Q 024292 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLI------------YRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~------------~~~~~~~~l~~~~~~~gi~via~~ 253 (269)
+.+.++++++..++.++|++++.+..... .+++...++++..+++|+.++.+.
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i 86 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPIL 86 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEE
Confidence 56777777777777888887766543211 123300369999999999988764
No 410
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.76 E-value=4.9e+02 Score=23.66 Aligned_cols=80 Identities=15% Similarity=0.062 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHHHHc-CC---ccEEEec--CcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCC---cchh---hHHHHH
Q 024292 175 GNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK---PEEN---GVKAAC 242 (269)
Q Consensus 175 ~~~~~~~~L~~l~~~-G~---ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~---~~~~---~l~~~~ 242 (269)
+.+++++.++++.+. +. ++++=+. |.+.+.++++.+.++.. +..++-++||+.... +... .+.+..
T Consensus 233 ~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~--~~~VnLIpynp~~~~~~~ps~e~l~~f~~~l 310 (343)
T PRK14469 233 SIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGL--KVFVNLIPVNPTVPGLEKPSRERIERFKEIL 310 (343)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhcc--CcEEEEEecCCCCccCCCCCHHHHHHHHHHH
Confidence 467889998887765 32 3444444 56778888888776543 356777889886532 2221 356677
Q ss_pred HHcCCeEEEccccc
Q 024292 243 DELGITLIAYCPIA 256 (269)
Q Consensus 243 ~~~gi~via~~pl~ 256 (269)
+++|+.+......+
T Consensus 311 ~~~gi~vtvr~~~g 324 (343)
T PRK14469 311 LKNGIEAEIRREKG 324 (343)
T ss_pred HHCCCeEEEeCCCC
Confidence 77899999887654
No 411
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=26.74 E-value=6e+02 Score=24.67 Aligned_cols=131 Identities=16% Similarity=0.161 Sum_probs=75.6
Q ss_pred CChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCC-CCCcEEEEecCCCCCCCCCHHHH
Q 024292 69 WDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD-PEVEVTVATKFAALPWRLGRQSV 147 (269)
Q Consensus 69 ~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~-~R~~v~I~tK~~~~~~~~~~~~i 147 (269)
+.+.+.+.+.+++.+...+|.+.|.-++.-|.. +-..+|+.++-..... .|+++.|++.+-. +.+- -
T Consensus 198 ~~rse~~fl~eI~~aV~Kag~~tvnipdTVgia-------~P~~y~dLI~y~~tn~~~~e~v~Is~HcHN---D~G~--a 265 (560)
T KOG2367|consen 198 FGRSELEFLLEILGAVIKAGVTTVNIPDTVGIA-------TPNEYGDLIEYLKTNTPGREKVCISTHCHN---DLGC--A 265 (560)
T ss_pred cccCcHHHHHHHHHHHHHhCCccccCcceeccc-------ChHHHHHHHHHHHccCCCceeEEEEEeecC---CccH--H
Confidence 445677899999999999999998776666542 2445566555332211 2799999999721 2221 1
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCc---CHHHHHHHHHHHHh
Q 024292 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKK 214 (269)
Q Consensus 148 ~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~---~~~~l~~~~~~~~~ 214 (269)
...- .+=..-|-+.||.-++-.-++..+....+.+-.++-+|. ++=-.|+ +..+|+.+++.+..
T Consensus 266 ~Ant-~~g~~AGA~~VE~~i~GiGERtGn~~L~~v~m~my~~g~--~~vs~~y~~~dlr~I~~mVed~~~ 332 (560)
T KOG2367|consen 266 TANT-ELGLLAGARQVEVTINGIGERTGNAPLEEVVMAMYCRGP--DYVSGNYTFIDLREIENMVEDCTG 332 (560)
T ss_pred HHHH-HHHhhcCcceEEEEeeccccccCCCCHHHHHHHheecCc--hhcCCccccccHHHHHHHHHHhhc
Confidence 1111 111234778999988877665444444444455555551 1111233 44556666555433
No 412
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=26.54 E-value=5.8e+02 Score=24.47 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCcc-EEEecCc------------CHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcc-hhhHHHHHHHcC
Q 024292 181 DGLGDAVEQGLVK-AVGVSNY------------SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE-ENGVKAACDELG 246 (269)
Q Consensus 181 ~~L~~l~~~G~ir-~iGvSn~------------~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~-~~~l~~~~~~~g 246 (269)
+.|+.+++.|..+ .+|+=+. +.+++.++++.+++.|+.+.+ ++-+.+-....+ -.+.++++.+.+
T Consensus 288 ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~-~~I~G~P~et~e~~~~t~~~~~~l~ 366 (497)
T TIGR02026 288 DILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEA-QFITGFENETDETFEETYRQLLDWD 366 (497)
T ss_pred HHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE-EEEEECCCCCHHHHHHHHHHHHHcC
Confidence 3455566677532 4555443 345666777777777765432 222222111111 124677777776
Q ss_pred CeEEEc
Q 024292 247 ITLIAY 252 (269)
Q Consensus 247 i~via~ 252 (269)
+..+.+
T Consensus 367 ~~~~~~ 372 (497)
T TIGR02026 367 PDQANW 372 (497)
T ss_pred CCceEE
Confidence 654443
No 413
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=26.49 E-value=2.6e+02 Score=23.85 Aligned_cols=77 Identities=16% Similarity=0.112 Sum_probs=42.3
Q ss_pred HHHHHHHHH-HHcCCccEEEecCcCHHHHHHHHHHHHhcCC------------------------CeeEEcccCCccCCC
Q 024292 178 GFIDGLGDA-VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI------------------------PLASNQVNYSLIYRK 232 (269)
Q Consensus 178 ~~~~~L~~l-~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~------------------------~~~~~Q~~~s~~~~~ 232 (269)
+.++.+.++ ++.|.-+.+=+++|+.+.+.++.+....... .+.++.+.++-....
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (249)
T cd08561 119 AAAAALADLIERYGAQDRVLVASFSDRVLRRFRRLCPRVATSAGEGEVAAFVLASRLGLGSLYSPPYDALQIPVRYGGVP 198 (249)
T ss_pred hHHHHHHHHHHHcCCCCcEEEEECCHHHHHHHHHHCCCcceeccHHHHHHHHHHhhcccccccCCCCcEEEcCcccCCee
Confidence 344444333 3446666777888888888887765321100 011122222111011
Q ss_pred cchhhHHHHHHHcCCeEEEccc
Q 024292 233 PEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 233 ~~~~~l~~~~~~~gi~via~~p 254 (269)
....++++.++++|+.+.+|..
T Consensus 199 ~~~~~~v~~~~~~G~~v~vWTV 220 (249)
T cd08561 199 LVTPRFVRAAHAAGLEVHVWTV 220 (249)
T ss_pred cCCHHHHHHHHHCCCEEEEEec
Confidence 1122699999999999999984
No 414
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=26.42 E-value=3.3e+02 Score=21.55 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHCCCCeeecccccC-CCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024292 75 KAAKAAFDTSLDNGITFFDTAEVYG-SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg-~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~ 153 (269)
|...+.++.|++.|.++|++--..- +|.--= .+.--.+-++|+.... +-.++|=.|... ..+.+.+.+-+
T Consensus 13 ent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv-~Hdi~tL~e~l~~~~~---~~~i~leiK~~~-----~~~~~~~~l~~ 83 (189)
T cd08556 13 ENTLAAFRKALEAGADGVELDVQLTKDGVLVV-IHDIPTLEEVLELVKG---GVGLNIELKEPT-----RYPGLEAKVAE 83 (189)
T ss_pred chHHHHHHHHHHcCCCEEEEEeeEcCCCCEEE-EcCCCCHHHHHHhccc---CcEEEEEECCCC-----CchhHHHHHHH
Confidence 7889999999999999997643322 110000 0001123344444331 135677777521 13345556666
Q ss_pred HHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCc
Q 024292 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~ 233 (269)
.++..+. .+=+++...+ .+.+..+.++..+ + .+|+...+..........+.. ..++.+..++..+.
T Consensus 84 ~i~~~~~--~~~v~i~s~~----~~~l~~~~~~~p~--~-~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~--- 149 (189)
T cd08556 84 LLREYGL--EERVVVSSFD----HEALRALKELDPE--V-PTGLLVDKPPLDPLLAELARA--LGADAVNPHYKLLT--- 149 (189)
T ss_pred HHHHcCC--cCCEEEEeCC----HHHHHHHHHhCCC--C-cEEEEeecCcccchhhhHHHh--cCCeEEccChhhCC---
Confidence 6666652 3445555433 2344444333322 1 233333221111111011111 23556666665432
Q ss_pred chhhHHHHHHHcCCeEEEccc
Q 024292 234 EENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 234 ~~~~l~~~~~~~gi~via~~p 254 (269)
..+++.|+++|+.+++|..
T Consensus 150 --~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 150 --PELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred --HHHHHHHHHcCCEEEEEcC
Confidence 2599999999999999974
No 415
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=26.31 E-value=1.9e+02 Score=26.90 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=38.5
Q ss_pred hHHHHHHHHhhccCCCCCCcEEEEecCCC--------CCCCCCH----HHHHHHHHHHHHHhCCCccceEEeecCCC
Q 024292 109 SETLLGRFIKERKQRDPEVEVTVATKFAA--------LPWRLGR----QSVLAALKDSLFRLGLSSVELYQLHWAGI 173 (269)
Q Consensus 109 sE~~lG~al~~~~~~~~R~~v~I~tK~~~--------~~~~~~~----~~i~~~l~~sL~~L~~dyiDl~~lH~p~~ 173 (269)
++..+.+.++..+ ..=+||-||+-. .|..++. +.|++.+.+.|++-|+....+|++-+.+.
T Consensus 129 ndv~La~~i~~~g----K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl 201 (376)
T PF05049_consen 129 NDVQLAKEIQRMG----KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDL 201 (376)
T ss_dssp HHHHHHHHHHHTT-----EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTT
T ss_pred hhHHHHHHHHHcC----CcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCc
Confidence 4778889898886 356779999852 1233443 46777888899999999999999987664
No 416
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=26.21 E-value=1.3e+02 Score=23.30 Aligned_cols=40 Identities=3% Similarity=-0.098 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCCccceEEeecCCCCC--hHHHHHHHHHHHHc
Q 024292 150 ALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAVEQ 189 (269)
Q Consensus 150 ~l~~sL~~L~~dyiDl~~lH~p~~~~--~~~~~~~L~~l~~~ 189 (269)
.+.+.|+.+...-+|+++++..+.+. ..+++..++.|.+.
T Consensus 56 ~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 56 GFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPK 97 (140)
T ss_pred HHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhh
Confidence 44444444544556666666665532 34445555555554
No 417
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=26.16 E-value=2.6e+02 Score=20.38 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=30.7
Q ss_pred HHHHHHHHcCCccEEE--------ecCc---CHHHHHHHHHHHHhcCCC-eeEEcccCCccCCCc
Q 024292 181 DGLGDAVEQGLVKAVG--------VSNY---SEKRLRNAYEKLKKRGIP-LASNQVNYSLIYRKP 233 (269)
Q Consensus 181 ~~L~~l~~~G~ir~iG--------vSn~---~~~~l~~~~~~~~~~~~~-~~~~Q~~~s~~~~~~ 233 (269)
+.-.+|+++||++++- +|-| +.+++.+++.. .| +...+++..++.+.+
T Consensus 28 a~a~eLq~~Gk~~~lWRv~G~~~n~sifdv~s~~eLh~iL~s-----LPL~p~m~i~VtpL~~HP 87 (90)
T TIGR03221 28 AYAQELQREGKWRHLWRVAGEYANYSIFDVESNDELHTLLSG-----LPLFPYMDIEVTPLARHP 87 (90)
T ss_pred HHHHHHHhCCceEEEEEecCCceeEEEEEcCCHHHHHHHHHh-----CCCCcceEeEEEEccCCC
Confidence 4457899999998764 3334 45666666554 34 456677777776654
No 418
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=26.14 E-value=63 Score=27.02 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHh
Q 024292 179 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (269)
Q Consensus 179 ~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 214 (269)
.++.|+..+.+|+|+.+ +|..+..+++....
T Consensus 4 Fle~Lep~Il~~~i~~l-----pp~v~k~lv~~y~~ 34 (196)
T PF12816_consen 4 FLECLEPFILSGKIKSL-----PPEVFKALVEHYAS 34 (196)
T ss_pred HHHHHHHHHHcCCCCCC-----CHHHHHHHHHHHHH
Confidence 46778888888888854 45555555555433
No 419
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=26.12 E-value=4.4e+02 Score=22.97 Aligned_cols=24 Identities=4% Similarity=0.069 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHCCCCeeeccc
Q 024292 73 KMKAAKAAFDTSLDNGITFFDTAE 96 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~ 96 (269)
+.++..++++...++||..|+...
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 457889999999999999999863
No 420
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=26.10 E-value=4.4e+02 Score=22.93 Aligned_cols=126 Identities=13% Similarity=0.041 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHCCCCeee--cccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 024292 73 KMKAAKAAFDTSLDNGITFFD--TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~D--TA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~ 150 (269)
+.++..+.++.+.+.|++.|- ++..+.... ..++.+-+..+... +-.+.+....+ ..+ +.
T Consensus 63 ~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~-----~~~~~~~~i~~~~~----~~~i~~~~~~g----~~~-----~e 124 (296)
T TIGR00433 63 KVDEVLEEARKAKAAGATRFCLVASGRGPKDR-----EFMEYVEAMVQIVE----EMGLKTCATLG----LLD-----PE 124 (296)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEecCCCChH-----HHHHHHHHHHHHHH----hCCCeEEecCC----CCC-----HH
Confidence 346667777777789997542 222222211 11344444333221 11333322222 223 33
Q ss_pred HHHHHHHhCCCccceEEeecCC-------CCChHHHHHHHHHHHHcCCcc----EEEecCcCHHHHHHHHHHHHhcCC
Q 024292 151 LKDSLFRLGLSSVELYQLHWAG-------IWGNEGFIDGLGDAVEQGLVK----AVGVSNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 151 l~~sL~~L~~dyiDl~~lH~p~-------~~~~~~~~~~L~~l~~~G~ir----~iGvSn~~~~~l~~~~~~~~~~~~ 217 (269)
.-+.|+..|++.+-+-+=..++ ....++.+++++.+++.|.-- -+|+ +.+.+.+.+.++.+...+.
T Consensus 125 ~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl-~et~~d~~~~~~~l~~l~~ 201 (296)
T TIGR00433 125 QAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL-GETVEDRIGLALALANLPP 201 (296)
T ss_pred HHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC-CCCHHHHHHHHHHHHhCCC
Confidence 3346777787765433211111 134678899999999998532 3677 6788888888887766653
No 421
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=26.02 E-value=4.5e+02 Score=23.04 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHCCCCeeeccc
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTAE 96 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~ 96 (269)
.+.++..++++.-.+.||+.|+...
T Consensus 17 ~s~e~K~~i~~~L~~~Gv~~IEvGs 41 (274)
T cd07938 17 IPTEDKIELIDALSAAGLRRIEVTS 41 (274)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 3458888999999999999999874
No 422
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=25.94 E-value=5.4e+02 Score=23.86 Aligned_cols=152 Identities=14% Similarity=0.011 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~ 153 (269)
.++..+.+..+++.|++.|=.-- |.... ....+.+ +++++.-. +++-|..=.. ..++.+...+
T Consensus 161 ~~~~~~~a~~~~~~Gf~~~Kikv--g~~~~---~~di~~v-~avRe~~G----~~~~l~vDaN---~~w~~~~A~~---- 223 (385)
T cd03326 161 LGRLRDEMRRYLDRGYTVVKIKI--GGAPL---DEDLRRI-EAALDVLG----DGARLAVDAN---GRFDLETAIA---- 223 (385)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeC--CCCCH---HHHHHHH-HHHHHhcC----CCCeEEEECC---CCCCHHHHHH----
Confidence 35566667777899999875421 11000 0012333 33333211 2333332221 2345543332
Q ss_pred HHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCC
Q 024292 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~ 232 (269)
.++.|. .+++.++..|-+ .+-++.+.+|.+.-.|- +.|=|.++...+.++++... ..--++++|+..+-.---
T Consensus 224 ~~~~l~--~~~~~~iEeP~~---~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a-~~~~~div~~d~~~~GGi 297 (385)
T cd03326 224 YAKALA--PYGLRWYEEPGD---PLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGG-MRPDRDVLQFDPGLSYGL 297 (385)
T ss_pred HHHHhh--CcCCCEEECCCC---ccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCC-ccccCCEEEeCchhhCCH
Confidence 333442 357778887743 23467777887775554 66677778888888866410 000137888877654322
Q ss_pred cchhhHHHHHHHcCCe
Q 024292 233 PEENGVKAACDELGIT 248 (269)
Q Consensus 233 ~~~~~l~~~~~~~gi~ 248 (269)
.+-..+.+.|+.+|+.
T Consensus 298 t~~~kia~lA~a~gi~ 313 (385)
T cd03326 298 PEYLRMLDVLEAHGWS 313 (385)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 2222588999999997
No 423
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=25.87 E-value=3.1e+02 Score=28.18 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=53.1
Q ss_pred EeecCCCCChHHHHHHHH--HHHHcCCccEEEecCcCHHHHHHH------------HHHHHhcCCCeeEEcccCCccCCC
Q 024292 167 QLHWAGIWGNEGFIDGLG--DAVEQGLVKAVGVSNYSEKRLRNA------------YEKLKKRGIPLASNQVNYSLIYRK 232 (269)
Q Consensus 167 ~lH~p~~~~~~~~~~~L~--~l~~~G~ir~iGvSn~~~~~l~~~------------~~~~~~~~~~~~~~Q~~~s~~~~~ 232 (269)
.+|..++...+.++++++ +|.++ |.-+|+|.-..+.+ +. .+.+-..| -++++-+.++-..+
T Consensus 237 ~vhGHnp~l~~~iv~~~~~~~l~~~--I~l~GiCCTg~e~~-R~~~gv~~~Gn~~~qe~~i~TG-avD~~VvD~QCi~p- 311 (784)
T TIGR00314 237 LVIGHNVMPGRPIADYLEENGMEDE--VELCGICCTAIDMT-RYNAKAKIVGPLSRQLRVIRAG-VADVIIVDEQCIRA- 311 (784)
T ss_pred EEECCCchHHHHHHHHHhChhHHHH--hceeeeeccccHHh-hhccCCcccCcHHHHHHHHHcC-CCcEEEEecccCcc-
Confidence 344444455677888877 66666 88889887655533 22 11111122 35555555554443
Q ss_pred cchhhHHHHHHHcCCeEEEcccccC-Cc
Q 024292 233 PEENGVKAACDELGITLIAYCPIAQ-DS 259 (269)
Q Consensus 233 ~~~~~l~~~~~~~gi~via~~pl~~-G~ 259 (269)
++.+.|+..+..+|+.++.+. |+
T Consensus 312 ----~l~~~a~c~~tklItTs~ka~~gl 335 (784)
T TIGR00314 312 ----DILEECKKMGIPLIATNDKACLGL 335 (784)
T ss_pred ----cHHHHHHhcCCeEEEcchHHhcCC
Confidence 599999999999999999874 54
No 424
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=25.83 E-value=5.9e+02 Score=24.30 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=54.4
Q ss_pred HHHHHHHHhhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC------hHHHHHH
Q 024292 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (269)
Q Consensus 110 E~~lG~al~~~~~~~~R-~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~------~~~~~~~ 182 (269)
|+-|-++|++...+.+. +-++|.|=+.. ..--+.+..-+++.-++++ ++++.+|.|.... .....++
T Consensus 116 e~kL~~aI~e~~~~~~P~~~I~V~tTC~~---~lIGDDi~av~~~~~~~~~---~pVi~v~t~gf~G~s~~~G~~~a~~a 189 (466)
T TIGR01282 116 DKKLKKAIDEIEELFPLNKGISIQSECPV---GLIGDDIEAVAKKASKELG---KPVVPVRCEGFRGVSQSLGHHIANDA 189 (466)
T ss_pred HHHHHHHHHHHHHhCCcccEEEEeCCChH---HHhccCHHHHHHHHhhhcC---CcEEEEeCCCcCCchhhHHHHHHHHH
Confidence 77778888876544333 55777777632 2212223333333333333 6889999887522 1222333
Q ss_pred HHH-HHH----------cCCccEEEecCcCHHHHHHHHHHHHhcCCCee
Q 024292 183 LGD-AVE----------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (269)
Q Consensus 183 L~~-l~~----------~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (269)
+.+ +.. .++|--||-.|+. ..+.++.++++..|+++.
T Consensus 190 i~~~l~~~~~~~~~~~~~~~VNiiG~~~~~-gd~~eik~lL~~~Gi~v~ 237 (466)
T TIGR01282 190 VRDWVLGKGDKEKFEPTPYDVAIIGDYNIG-GDAWESRILLEEIGLRVV 237 (466)
T ss_pred HHHHhhccccccccCCCCCeEEEEecCCCc-ccHHHHHHHHHHcCCeEE
Confidence 332 221 3567788855542 333444444556676544
No 425
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=25.80 E-value=6.1e+02 Score=24.43 Aligned_cols=157 Identities=14% Similarity=0.107 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~ 153 (269)
.+-....++.|.+.|+..|=..+.-.+-+. .+..+ ++.++.+.. -.+.|+-.. ...++.+++.+.+++
T Consensus 104 ddvv~~fv~~a~~~Gidi~Rifd~lnd~~n-----~~~ai-~~ak~~G~~---~~~~i~yt~---sp~~t~~y~~~~a~~ 171 (468)
T PRK12581 104 DDIVDKFISLSAQNGIDVFRIFDALNDPRN-----IQQAL-RAVKKTGKE---AQLCIAYTT---SPVHTLNYYLSLVKE 171 (468)
T ss_pred chHHHHHHHHHHHCCCCEEEEcccCCCHHH-----HHHHH-HHHHHcCCE---EEEEEEEEe---CCcCcHHHHHHHHHH
Confidence 366777899999999998876665554111 23333 334444311 112233222 124566777776665
Q ss_pred HHHHhCCCccceEEeecC-CCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHH-HhcCCC-eeEEcccCCccC
Q 024292 154 SLFRLGLSSVELYQLHWA-GIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL-KKRGIP-LASNQVNYSLIY 230 (269)
Q Consensus 154 sL~~L~~dyiDl~~lH~p-~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~-~~~~~~-~~~~Q~~~s~~~ 230 (269)
+..+|.| .+.|-.. ....+.++.+.+..+++... .-||+=.|+...+.-+..++ -+.|+. +++--..+..-.
T Consensus 172 -l~~~Gad---~I~IkDtaG~l~P~~v~~Lv~alk~~~~-~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g~ga 246 (468)
T PRK12581 172 -LVEMGAD---SICIKDMAGILTPKAAKELVSGIKAMTN-LPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFSEGT 246 (468)
T ss_pred -HHHcCCC---EEEECCCCCCcCHHHHHHHHHHHHhccC-CeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccCCCc
Confidence 4567864 4444432 22456777777777777554 35888877543333322221 233432 343333333322
Q ss_pred CCcchhhHHHHHHHcCC
Q 024292 231 RKPEENGVKAACDELGI 247 (269)
Q Consensus 231 ~~~~~~~l~~~~~~~gi 247 (269)
-++..+.++..++..|+
T Consensus 247 gN~~tE~lv~~L~~~g~ 263 (468)
T PRK12581 247 SQPATESMYLALKEAGY 263 (468)
T ss_pred CChhHHHHHHHHHhcCC
Confidence 22322346777766544
No 426
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=25.47 E-value=5.2e+02 Score=23.54 Aligned_cols=135 Identities=16% Similarity=0.069 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCC----------------CCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecC
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGS----------------RASFGAINSETLLGRFIKERKQRDPEVEVTVATKF 135 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~----------------g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~ 135 (269)
.+.++...+.+.+-+.|+.+|=|...-.. ++. ..-.+| +.+.+. ...|+|+|=.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~----~n~pLL-~~~A~~-----gkPvilStGm 142 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEI----TNAPLL-KKIARF-----GKPVILSTGM 142 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccc----cCHHHH-HHHHhc-----CCcEEEECCC
Confidence 45678888999999999999866422111 100 012222 222222 2456666654
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC--h-HHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHH
Q 024292 136 AALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--N-EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL 212 (269)
Q Consensus 136 ~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~--~-~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~ 212 (269)
.+.+.+..+++...+. |.+--|+.++|+...+| . .--+.++..|++.=. .-||+|.|+.....-...++
T Consensus 143 ------atl~Ei~~Av~~i~~~-G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~~~~aAva 214 (329)
T TIGR03569 143 ------ATLEEIEAAVGVLRDA-GTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGIEAPIAAVA 214 (329)
T ss_pred ------CCHHHHHHHHHHHHHc-CCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccHHHHHHHHH
Confidence 3678888888876543 43212699999865433 2 223555555554432 46999999765444443332
Q ss_pred HhcCCCeeEEcccCCc
Q 024292 213 KKRGIPLASNQVNYSL 228 (269)
Q Consensus 213 ~~~~~~~~~~Q~~~s~ 228 (269)
.| -+++.-++.+
T Consensus 215 --lG--A~iIEkH~tl 226 (329)
T TIGR03569 215 --LG--ATVIEKHFTL 226 (329)
T ss_pred --cC--CCEEEeCCCh
Confidence 23 2366666654
No 427
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=25.43 E-value=1.5e+02 Score=28.05 Aligned_cols=69 Identities=25% Similarity=0.376 Sum_probs=42.4
Q ss_pred CcccccceecccccCCCCcCCCCCCChhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCC
Q 024292 45 DLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD 124 (269)
Q Consensus 45 g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~ 124 (269)
|+ ||+.|+.-...|.. .-.+...+-++..-+.|-.+-=.--.||.|++ .+-++++...
T Consensus 16 Gv-VP~~Gl~~~~VGr~----------~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKT--------f~l~~i~~~A--- 73 (416)
T PF10923_consen 16 GV-VPRIGLDHIAVGRE----------REIEALDRDLDRVADGGSSFKFIRGEYGSGKT--------FFLRLIRERA--- 73 (416)
T ss_pred CC-CCcccCcceeechH----------HHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHH--------HHHHHHHHHH---
Confidence 65 99999988887764 11233444455433444444445668999965 7778887765
Q ss_pred CCCcEEEEecCC
Q 024292 125 PEVEVTVATKFA 136 (269)
Q Consensus 125 ~R~~v~I~tK~~ 136 (269)
+++=|+++.+-
T Consensus 74 -~~~~fvvs~v~ 84 (416)
T PF10923_consen 74 -LEKGFVVSEVD 84 (416)
T ss_pred -HHcCCEEEEEe
Confidence 34555555553
No 428
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=25.42 E-value=4.6e+02 Score=22.96 Aligned_cols=73 Identities=14% Similarity=0.144 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCCccEEEecCcCH---HHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcc
Q 024292 177 EGFIDGLGDAVEQGLVKAVGVSNYSE---KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 177 ~~~~~~L~~l~~~G~ir~iGvSn~~~---~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~ 253 (269)
..+++.+++++++=.+.-+=++-+++ .-++++++.+.+.|+. -+-++.=+++ +..++++.|+++|+..+..-
T Consensus 77 ~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvd--gviipDLP~e---e~~~~~~~~~~~gi~~I~lv 151 (263)
T CHL00200 77 NKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVK--GLIIPDLPYE---ESDYLISVCNLYNIELILLI 151 (263)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCe--EEEecCCCHH---HHHHHHHHHHHcCCCEEEEE
Confidence 46677777777554455455555554 2456677777666643 2222222222 22368899999998877654
Q ss_pred c
Q 024292 254 P 254 (269)
Q Consensus 254 p 254 (269)
+
T Consensus 152 ~ 152 (263)
T CHL00200 152 A 152 (263)
T ss_pred C
Confidence 3
No 429
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=25.41 E-value=5e+02 Score=23.37 Aligned_cols=133 Identities=17% Similarity=0.121 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHH-HCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 024292 74 MKAAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (269)
Q Consensus 74 ~~~~~~~l~~A~-~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~ 152 (269)
.++..++++..- ..|++.+--+- |.+- ...+..+-+.+........=+.+-|.||.. ...+..+.+.+-
T Consensus 127 ~~~~~~~i~~i~~~~~i~~VvltG--GEPL----~~~d~~L~~ll~~l~~i~~~~~iri~tr~~----~~~p~rit~el~ 196 (321)
T TIGR03821 127 KAQWKEALEYIAQHPEINEVILSG--GDPL----MAKDHRLDWLLNLLEQIPHLKRLRIHTRLP----VVIPDRITSGLC 196 (321)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeC--cccc----cCCchHHHHHHHHHHhCCCCcEEEEecCcc----eeeHHHhhHHHH
Confidence 355666665544 34787654321 2211 122444444443322110014566788762 344556777776
Q ss_pred HHHHHhCCCccceEEeec--CCCCChHHHHHHHHHHHHcCCccEEE-ec----CcCHHHHHHHHHHHHhcCCCe
Q 024292 153 DSLFRLGLSSVELYQLHW--AGIWGNEGFIDGLGDAVEQGLVKAVG-VS----NYSEKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 153 ~sL~~L~~dyiDl~~lH~--p~~~~~~~~~~~L~~l~~~G~ir~iG-vS----n~~~~~l~~~~~~~~~~~~~~ 219 (269)
+.|+..+.+++ ..+|- |. .-.+++.++++.|++.|..-.+= +- |.+.+.+.++.+.+...|+.+
T Consensus 197 ~~L~~~~~~~~--~~~h~dh~~-Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~p 267 (321)
T TIGR03821 197 DLLANSRLQTV--LVVHINHAN-EIDAEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGVLP 267 (321)
T ss_pred HHHHhcCCcEE--EEeeCCChH-hCcHHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCCee
Confidence 77777765433 23464 32 23467999999999999532111 11 447889999998888777643
No 430
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=25.37 E-value=2.5e+02 Score=22.92 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=36.8
Q ss_pred ecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcC
Q 024292 197 VSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELG 246 (269)
Q Consensus 197 vSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~g 246 (269)
+...+.++++++++.++..|+.-.++-.-||+.++..|. .+.+.+++.|
T Consensus 128 i~~ld~~~v~~~~~~l~~~gv~avAV~~~fS~~np~hE~-~v~eii~e~g 176 (176)
T PF05378_consen 128 IEPLDEDEVREALRELKDKGVEAVAVSLLFSYRNPEHEQ-RVAEIIREEG 176 (176)
T ss_pred ecCCCHHHHHHHHHHHHhCCCCEEEEECccCCCCHHHHH-HHHHHHHhcC
Confidence 345677888888888887777777777888888887776 4777777654
No 431
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=25.23 E-value=4.6e+02 Score=22.88 Aligned_cols=112 Identities=15% Similarity=0.107 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCC-C---CChHHHHHHHHHHHH--cCCc-cEEEecCcCHHHHHHHHHHHH
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAG-I---WGNEGFIDGLGDAVE--QGLV-KAVGVSNYSEKRLRNAYEKLK 213 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~-~---~~~~~~~~~L~~l~~--~G~i-r~iGvSn~~~~~l~~~~~~~~ 213 (269)
..+.+.+++.++..++. | +|-+++-... . ...+|-.+.++..++ .|++ -..|++..+.++..+..+.++
T Consensus 18 ~id~~~~~~~i~~l~~~-G---v~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~ 93 (289)
T PF00701_consen 18 SIDEDALKRLIDFLIEA-G---VDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQ 93 (289)
T ss_dssp SB-HHHHHHHHHHHHHT-T---SSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHc-C---CCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHh
Confidence 46677777777766543 4 5666664322 1 344554444444443 3444 678999999888888888888
Q ss_pred hcCCCeeEEcccCCccCCCcchhhHHHHH----HHcCCeEEEcc-cccCCc
Q 024292 214 KRGIPLASNQVNYSLIYRKPEENGVKAAC----DELGITLIAYC-PIAQDS 259 (269)
Q Consensus 214 ~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~----~~~gi~via~~-pl~~G~ 259 (269)
..|..-.++..+|.... . ++++++++ ..-+++++.|. |-..|.
T Consensus 94 ~~Gad~v~v~~P~~~~~-s--~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~ 141 (289)
T PF00701_consen 94 DAGADAVLVIPPYYFKP-S--QEELIDYFRAIADATDLPIIIYNNPARTGN 141 (289)
T ss_dssp HTT-SEEEEEESTSSSC-C--HHHHHHHHHHHHHHSSSEEEEEEBHHHHSS
T ss_pred hcCceEEEEeccccccc-h--hhHHHHHHHHHHhhcCCCEEEEECCCcccc
Confidence 88876555555543321 1 22455554 44689999987 434444
No 432
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=25.21 E-value=3.8e+02 Score=27.09 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=48.2
Q ss_pred EeecCCCCChHHHHHHHHHHHHcCCccEEEecCc---CHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHH
Q 024292 167 QLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACD 243 (269)
Q Consensus 167 ~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~---~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~ 243 (269)
++|.|- ....-+++.+.+....-.|.+|=++-| +-..+.+++..|.+.|..+.+ -++...-..........+.++
T Consensus 333 LLh~PY-~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~ii~aL~~Aa~~Gk~V~v-~veLkArfde~~ni~wa~~le 410 (672)
T TIGR03705 333 LLHHPY-ESFDPVVEFLRQAAEDPDVLAIKQTLYRTSKDSPIIDALIEAAENGKEVTV-VVELKARFDEEANIRWARRLE 410 (672)
T ss_pred EEECCc-cCHHHHHHHHHHHhcCCCceEEEEEEEEecCCcHHHHHHHHHHHcCCEEEE-EEEehhhccchhhHHHHHHHH
Confidence 344443 234567788889999999999998877 223444444446667754443 233322221111113556777
Q ss_pred HcCCeEEE
Q 024292 244 ELGITLIA 251 (269)
Q Consensus 244 ~~gi~via 251 (269)
+.|+.|+=
T Consensus 411 ~aG~~viy 418 (672)
T TIGR03705 411 EAGVHVVY 418 (672)
T ss_pred HcCCEEEE
Confidence 78887753
No 433
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=25.21 E-value=1.9e+02 Score=24.81 Aligned_cols=20 Identities=25% Similarity=0.604 Sum_probs=15.4
Q ss_pred HHHHHHHCCCCeeecccccC
Q 024292 80 AFDTSLDNGITFFDTAEVYG 99 (269)
Q Consensus 80 ~l~~A~~~Gin~~DTA~~Yg 99 (269)
.+...++.|||+||-=..+.
T Consensus 42 ~i~~QL~~GiR~~dlr~~~~ 61 (271)
T cd08557 42 SITDQLDAGVRYLDLRVAYD 61 (271)
T ss_pred CHHHHHhcCceEEEEEeeee
Confidence 46788899999999755543
No 434
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.14 E-value=4.1e+02 Score=22.29 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEE
Q 024292 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 144 ~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~ 222 (269)
...+.+.+++.++..|. ++.+ +.++........+.++.+..+ ++..|=++..+.+.+...++.+...++|+.++
T Consensus 15 ~~~~~~g~~~~~~~~g~---~v~~-~~~~~~~~~~~~~~i~~l~~~-~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~ 88 (271)
T cd06312 15 WTVVKNGAEDAAKDLGV---DVEY-RGPETFDVADMARLIEAAIAA-KPDGIVVTIPDPDALDPAIKRAVAAGIPVISF 88 (271)
T ss_pred HHHHHHHHHHHHHHhCC---EEEE-ECCCCCCHHHHHHHHHHHHHh-CCCEEEEeCCChHHhHHHHHHHHHCCCeEEEe
Confidence 44566677777777663 3333 233222445556666777666 45666555544444444444445555555444
No 435
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.14 E-value=4.2e+02 Score=23.32 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeE
Q 024292 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITL 249 (269)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~v 249 (269)
++.+|.++.+.+++.+++..+.+.+++. ..+-..+++.|+.+
T Consensus 211 s~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~~~ia~~~gv~v 252 (287)
T cd01137 211 TPKQVATLIEQVKKEKVPAVFVESTVND-------RLMKQVAKETGAKI 252 (287)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCCCh-------HHHHHHHHHhCCcc
Confidence 5677777777777777766665555442 12556667777765
No 436
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=25.02 E-value=5.2e+02 Score=23.45 Aligned_cols=98 Identities=14% Similarity=0.083 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccC--CCCCCcE-----EEEecCCCC--------
Q 024292 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQ--RDPEVEV-----TVATKFAAL-------- 138 (269)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~--~~~R~~v-----~I~tK~~~~-------- 138 (269)
++..+++-+..+++|.+.|-|...+.+-.+..-..+++..-+..+.... ...|+.+ +|.--+|++
T Consensus 52 Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~~v~gsiGp~~A~l~~g~ 131 (317)
T KOG1579|consen 52 PEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADLARERLGEETGYVAGSIGPYGATLADGS 131 (317)
T ss_pred hHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccccceeeeecccccceecCCc
Confidence 4778888888999999999997666542221111112222222221100 0013333 344445431
Q ss_pred ------CCCCCHHHHHHHHHHHHHHhCCCccceEEeecC
Q 024292 139 ------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWA 171 (269)
Q Consensus 139 ------~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p 171 (269)
-...+.+.+.+..+..|+.+.-.-||++.+...
T Consensus 132 eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETi 170 (317)
T KOG1579|consen 132 EYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETI 170 (317)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeec
Confidence 123456678888888888886666999999874
No 437
>PRK13753 dihydropteroate synthase; Provisional
Probab=25.02 E-value=4.9e+02 Score=23.13 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEe-ecCCC--CCh-HH---HHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHh
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQL-HWAGI--WGN-EG---FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~l-H~p~~--~~~-~~---~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 214 (269)
.+.+.+.+..++.+ .-|.|.||+=-- .+|.. .+. +| +...++.+++.+. -|.|-++.++.++++++.
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~a--- 95 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKR--- 95 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHc---
Confidence 34566666666543 557888888653 34654 222 23 3367777777652 489999999999998764
Q ss_pred cCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccc
Q 024292 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPI 255 (269)
Q Consensus 215 ~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl 255 (269)
|..+. | ..+-+. .+ .+.+.|.+.+++++.+-..
T Consensus 96 -GadiI-N--DVsg~~-d~---~~~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 96 -GVGYL-N--DIQGFP-DP---ALYPDIAEADCRLVVMHSA 128 (279)
T ss_pred -CCCEE-E--eCCCCC-ch---HHHHHHHHcCCCEEEEecC
Confidence 43331 1 112222 22 4889999999998886644
No 438
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=24.96 E-value=4.5e+02 Score=22.61 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHcCCccEEEecCc-CHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 024292 176 NEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 176 ~~~~~~~L~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~p 254 (269)
.++..++|..|+ +..|..-.. +..|..++-.+|++.|+. .|.|+.....+ ++++..-+.|..++.-+.
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~-ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPE-ELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHH-HHHHHHHHcCCeEEEEEE
Confidence 455566666665 555654432 556666666667777753 24455543333 588888888988888888
Q ss_pred ccCCcc
Q 024292 255 IAQDSP 260 (269)
Q Consensus 255 l~~G~l 260 (269)
-+.|+.
T Consensus 144 sa~gL~ 149 (223)
T COG2102 144 SAEGLD 149 (223)
T ss_pred eccCCC
Confidence 888874
No 439
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=24.94 E-value=1.6e+02 Score=25.68 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=16.1
Q ss_pred hHHHHHHHcCCeEEEccc
Q 024292 237 GVKAACDELGITLIAYCP 254 (269)
Q Consensus 237 ~l~~~~~~~gi~via~~p 254 (269)
++++.|+++|+.+.+|..
T Consensus 241 ~~v~~~~~~Gl~v~vWTv 258 (282)
T cd08605 241 TAVSLVKASGLELGTYGK 258 (282)
T ss_pred HHHHHHHHcCcEEEEeCC
Confidence 589999999999999975
No 440
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=24.90 E-value=1.9e+02 Score=21.44 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCc---CHHHHHHHHHHHHhc
Q 024292 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKR 215 (269)
Q Consensus 149 ~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~---~~~~l~~~~~~~~~~ 215 (269)
.-+...|++-|-+-++ +-.. .+.+++.+++ .+-+...||+|.. ....+.++++.+++.
T Consensus 17 ~~~~~~l~~~G~~V~~---lg~~--~~~~~l~~~~----~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~ 77 (119)
T cd02067 17 NIVARALRDAGFEVID---LGVD--VPPEEIVEAA----KEEDADAIGLSGLLTTHMTLMKEVIEELKEA 77 (119)
T ss_pred HHHHHHHHHCCCEEEE---CCCC--CCHHHHHHHH----HHcCCCEEEEeccccccHHHHHHHHHHHHHc
Confidence 3566677777754433 3211 4555555544 4557778888854 344455555555444
No 441
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.86 E-value=2.2e+02 Score=25.30 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=9.6
Q ss_pred hHHHHHHHcCCeEEEc
Q 024292 237 GVKAACDELGITLIAY 252 (269)
Q Consensus 237 ~l~~~~~~~gi~via~ 252 (269)
++++..+++|+.++.+
T Consensus 74 ~mi~~l~~~G~k~~l~ 89 (303)
T cd06592 74 GMIDQLHDLGFRVTLW 89 (303)
T ss_pred HHHHHHHHCCCeEEEE
Confidence 4666666666666553
No 442
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=24.82 E-value=3.8e+02 Score=27.60 Aligned_cols=87 Identities=16% Similarity=0.072 Sum_probs=53.2
Q ss_pred CccceEEeecCCCCChHHHHHHHH--HHHHcCCccEEEecCcCHHHHHHH------------HHHHHhcCCCeeEEcccC
Q 024292 161 SSVELYQLHWAGIWGNEGFIDGLG--DAVEQGLVKAVGVSNYSEKRLRNA------------YEKLKKRGIPLASNQVNY 226 (269)
Q Consensus 161 dyiDl~~lH~p~~~~~~~~~~~L~--~l~~~G~ir~iGvSn~~~~~l~~~------------~~~~~~~~~~~~~~Q~~~ 226 (269)
||+-+ .+|..++...+.++++++ +|.+ .|.-+|+|.-..+.+ +. .+.+-..| -++++-+.+
T Consensus 236 ~~vnI-~vhGHnp~l~~~iv~~~~~~el~~--gI~~~GiCCTg~e~~-R~~~g~~~~Gn~~~qe~~i~TG-avD~~VvD~ 310 (781)
T PRK00941 236 SKPVI-LVIGHNVAPGTYIIDYLEENGLTD--KVEVCGICCTAIDIT-RYSEKAKVVGPLSKQLKFIRSG-IPDVIVVDE 310 (781)
T ss_pred CCcEE-EEECCCchHHHHHHHHHhCcchhh--CceEEEEecccchHh-hhccCCcccCcHHHHHHHHHcC-CCcEEEEec
Confidence 44443 344444355677777776 5665 777788887655543 22 11111122 355555555
Q ss_pred CccCCCcchhhHHHHHHHcCCeEEEcccccC
Q 024292 227 SLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 227 s~~~~~~~~~~l~~~~~~~gi~via~~pl~~ 257 (269)
+-..+ ++.+.|++.|.++|+.++-.+
T Consensus 311 QCi~p-----~L~eiA~~ygt~lItTs~k~~ 336 (781)
T PRK00941 311 QCVRT-----DILEEAKKLGIPVIATNDKIC 336 (781)
T ss_pred ccCcc-----cHHHHHHHhCCCEEEeccccc
Confidence 54443 599999999999999998764
No 443
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=24.76 E-value=4.8e+02 Score=22.90 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=11.1
Q ss_pred HHHHHHHCCCCeeecccccCC
Q 024292 80 AFDTSLDNGITFFDTAEVYGS 100 (269)
Q Consensus 80 ~l~~A~~~Gin~~DTA~~Yg~ 100 (269)
.+..|++.|=-.|=.+.|+|+
T Consensus 104 ~l~~a~~~g~gvI~~t~H~Gn 124 (298)
T PRK08419 104 NLLDALKKKRPIIVTTAHYGY 124 (298)
T ss_pred HHHHHHHcCCCEEEEeeCccH
Confidence 445555555444555556665
No 444
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=24.75 E-value=5.5e+02 Score=23.59 Aligned_cols=26 Identities=4% Similarity=0.135 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccc
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTAEV 97 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~ 97 (269)
.+.++-.++++...++|++.|+....
T Consensus 65 ~s~e~Ki~ia~~L~~~GV~~IEvGs~ 90 (347)
T PLN02746 65 VPTSVKVELIQRLVSSGLPVVEATSF 90 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 45588899999999999999998744
No 445
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=24.74 E-value=6.4e+02 Score=24.33 Aligned_cols=25 Identities=4% Similarity=-0.065 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHCCCCeeeccc
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTAE 96 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~ 96 (269)
.+.++..++.+.-.+.|+.+|+...
T Consensus 20 ~s~e~K~~ia~~L~~~GV~~IEvG~ 44 (494)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAGF 44 (494)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 3457888888888899999999753
No 446
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=24.68 E-value=3.7e+02 Score=24.64 Aligned_cols=34 Identities=15% Similarity=0.065 Sum_probs=19.2
Q ss_pred CccEEEec---Cc--CHHHHHHHHHHHHhcCCCeeEEcc
Q 024292 191 LVKAVGVS---NY--SEKRLRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 191 ~ir~iGvS---n~--~~~~l~~~~~~~~~~~~~~~~~Q~ 224 (269)
++|.|=++ |. ....++++.++|++.++.+.+-..
T Consensus 131 ~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a 169 (378)
T TIGR01329 131 KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNT 169 (378)
T ss_pred CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECC
Confidence 56666543 32 223577777778777765444433
No 447
>PRK08508 biotin synthase; Provisional
Probab=24.65 E-value=4.8e+02 Score=22.86 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCccEEE-----------e-cCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCC
Q 024292 180 IDGLGDAVEQGLVKAVG-----------V-SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (269)
Q Consensus 180 ~~~L~~l~~~G~ir~iG-----------v-Sn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi 247 (269)
-+.|++|++.|.-+.-+ + +.++.+...+.++.+++.|+++.+- +-+-+.+...+..+++.+.++.+.
T Consensus 102 ~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg-~I~GlGEt~ed~~~~l~~lr~L~~ 180 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSG-GIFGLGESWEDRISFLKSLASLSP 180 (279)
T ss_pred HHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecce-eEEecCCCHHHHHHHHHHHHcCCC
Confidence 56677788887644331 2 2466677777777777777654332 223344444443457777777777
Q ss_pred eEEEcccc
Q 024292 248 TLIAYCPI 255 (269)
Q Consensus 248 ~via~~pl 255 (269)
.-+.+.++
T Consensus 181 ~svpl~~~ 188 (279)
T PRK08508 181 HSTPINFF 188 (279)
T ss_pred CEEeeCCc
Confidence 65555554
No 448
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3.5.3.1 from EC), agmatinase (3.5.3.11 from EC), formiminoglutamase (3.5.3.8 from EC) and proclavaminate amidinohydrolase (3.5.3.22 from EC) []. These enzymes share a 3-layer alpha-beta-alpha structure [, , ], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways. Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion []. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia. Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals. Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide. Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0046872 metal ion binding; PDB: 4DZ4_A 3SL0_A 3MMR_A 3SL1_A 2EF5_D 2EIV_K 2EF4_A 3NIO_F 3THH_A 1WVA_A ....
Probab=24.60 E-value=2.3e+02 Score=24.60 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCccceEEeecC----CC-------------CChHHHHHHHHHHHHcCCccEEEecCcCHH
Q 024292 149 AALKDSLFRLGLSSVELYQLHWA----GI-------------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEK 203 (269)
Q Consensus 149 ~~l~~sL~~L~~dyiDl~~lH~p----~~-------------~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~ 203 (269)
+.+++.++.++- ..|-++||-. |+ ...+++++.++.+.+.++|..+.|+.++|.
T Consensus 186 ~~~~~~~~~~~~-~~~~vylsiDiDvlDp~~~pg~~~p~pgGl~~~e~~~~l~~l~~~~~vvg~di~E~~P~ 256 (277)
T PF00491_consen 186 AVLEEILEALGS-GTDPVYLSIDIDVLDPAFAPGVGTPEPGGLSPRELLQLLRALARSGKVVGLDIVEYNPD 256 (277)
T ss_dssp HHHHHHHHHHTT-STSEEEEEEEGGGBBTTTSTSBSS-BSS-B-HHHHHHHHHHHHHHSEEEEEEEE-B-GG
T ss_pred hHHHHHHHHHhc-CCCeEEEEEehhhcChhhCCCcCCCcCCCCCHHHHHHHHHHHcccCCeEEEEEEEECCC
Confidence 346777777742 4567778731 11 236799999999988999999999988763
No 449
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=24.54 E-value=4.7e+02 Score=23.97 Aligned_cols=63 Identities=17% Similarity=0.264 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCC-ccEEEecCcCHHHHHHHHH
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYE 210 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~-ir~iGvSn~~~~~l~~~~~ 210 (269)
++.+... .+-+.|.++|+++|++-+ |. ..++-++.+..+.+.+. .+-.+++....+.++.+.+
T Consensus 19 ~s~~~k~-~ia~~L~~~Gv~~IEvG~---p~--~~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~ 82 (363)
T TIGR02090 19 LTVEQKV-EIARKLDELGVDVIEAGF---PI--ASEGEFEAIKKISQEGLNAEICSLARALKKDIDKAID 82 (363)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEEeC---CC--CChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHH
Confidence 4444333 444457888888888643 22 11233566666665544 4444455555666666543
No 450
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=24.54 E-value=4.2e+02 Score=22.16 Aligned_cols=112 Identities=11% Similarity=0.028 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024292 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l 151 (269)
.++++-.+++..+++.|+.++|.=-... ++.+...+.... .+.+++++-.... ...+.+.+.+.+
T Consensus 72 ~~~~~~~~ll~~~~~~~~d~iDiE~~~~----------~~~~~~~~~~~~---~~~~iI~S~H~f~--~tp~~~~l~~~~ 136 (224)
T PF01487_consen 72 GSEEEYLELLERAIRLGPDYIDIELDLF----------PDDLKSRLAARK---GGTKIILSYHDFE--KTPSWEELIELL 136 (224)
T ss_dssp S-HHHHHHHHHHHHHHTSSEEEEEGGCC----------HHHHHHHHHHHH---TTSEEEEEEEESS-----THHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccc----------hhHHHHHHHHhh---CCCeEEEEeccCC--CCCCHHHHHHHH
Confidence 4568899999999999999999854422 222222222222 1468888877321 223334455555
Q ss_pred HHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHc--CCccEEEecCc
Q 024292 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNY 200 (269)
Q Consensus 152 ~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~--G~ir~iGvSn~ 200 (269)
++. ..+|.|.+=+.....-. .+...+++.+.++++. ..+-.+++...
T Consensus 137 ~~~-~~~gadivKia~~~~~~-~D~~~l~~~~~~~~~~~~~p~i~~~MG~~ 185 (224)
T PF01487_consen 137 EEM-QELGADIVKIAVMANSP-EDVLRLLRFTKEFREEPDIPVIAISMGEL 185 (224)
T ss_dssp HHH-HHTT-SEEEEEEE-SSH-HHHHHHHHHHHHHHHHTSSEEEEEEETGG
T ss_pred HHH-HhcCCCeEEEEeccCCH-HHHHHHHHHHHHHhhccCCcEEEEEcCCC
Confidence 443 47777655554443210 2234455555666654 34445555444
No 451
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=24.50 E-value=4.4e+02 Score=25.45 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCC-ccEEEecCcCHHHHHHHHHH
Q 024292 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 151 l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~-ir~iGvSn~~~~~l~~~~~~ 211 (269)
+-+.|.++|+|+|.+- +|.. + +.-++.++++.+..+ .+..+++......++.+.+.
T Consensus 28 ia~~L~~~GV~~IEvG---~p~~-s-~~d~e~v~~i~~~~~~~~i~al~r~~~~did~a~~a 84 (494)
T TIGR00973 28 IALALERLGVDIIEAG---FPVS-S-PGDFEAVQRIARTVKNPRVCGLARCVEKDIDAAAEA 84 (494)
T ss_pred HHHHHHHcCCCEEEEE---CCCC-C-HHHHHHHHHHHHhCCCCEEEEEcCCCHHhHHHHHHh
Confidence 3344777777666643 3321 1 111334444433333 45555555555566655543
No 452
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=24.48 E-value=1.6e+02 Score=21.90 Aligned_cols=68 Identities=21% Similarity=0.202 Sum_probs=48.4
Q ss_pred CCCHHHH---HHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHH
Q 024292 141 RLGRQSV---LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (269)
Q Consensus 141 ~~~~~~i---~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 211 (269)
+.+++.+ -.+.+..+...++-++|+=.+-+.|.....-..+.++..+++|+ ++=+++ -|+++..+.+.
T Consensus 19 eL~r~tl~~lw~~r~~~~~~~~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~--~~~L~~-~p~~L~tLa~L 89 (99)
T COG3113 19 ELDRDTLLPLWSQREAQLKQLDTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGN--AVTLTG-VPEQLRTLAEL 89 (99)
T ss_pred cccHHHHHHHHHHHHHHccccCeEEEehhhcceechHHHHHHHHHHHHHHHcCC--eeEEec-CcHHHHHHHHH
Confidence 3455543 34556666677788999999988887777778889999999997 555554 35677766554
No 453
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=24.44 E-value=5.6e+02 Score=23.52 Aligned_cols=60 Identities=15% Similarity=0.366 Sum_probs=38.4
Q ss_pred HHHHHHcC--CccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchh----hHHHHHHHc
Q 024292 183 LGDAVEQG--LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEEN----GVKAACDEL 245 (269)
Q Consensus 183 L~~l~~~G--~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~----~l~~~~~~~ 245 (269)
++.+-+.| .|-+-|+++. +.++++++.+++.+.+ +++-..++-..+.+.++ .+..+....
T Consensus 140 ik~iA~~~kPiIlSTGma~~--~ei~~av~~~r~~g~~-~i~LLhC~s~YPap~ed~NL~~i~~l~~~F 205 (347)
T COG2089 140 IKYIAKKGKPIILSTGMATI--EEIEEAVAILRENGNP-DIALLHCTSAYPAPFEDVNLKAIPKLAEAF 205 (347)
T ss_pred HHHHHhcCCCEEEEcccccH--HHHHHHHHHHHhcCCC-CeEEEEecCCCCCCHHHhhHHHHHHHHHHh
Confidence 34444444 4777788774 7899999999888754 66666666666666543 344444444
No 454
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=24.35 E-value=1.8e+02 Score=26.28 Aligned_cols=52 Identities=17% Similarity=0.372 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEcccCCc------cC----CCcchhhHHHHHHHcCCeEEEc
Q 024292 201 SEKRLRNAYEKLKKRGIPLASNQVNYSL------IY----RKPEENGVKAACDELGITLIAY 252 (269)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~Q~~~s~------~~----~~~~~~~l~~~~~~~gi~via~ 252 (269)
+.+.++++++..++.++|++++.++... +. +-+.-.++++..+++|+.++.+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~ 83 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTWDKERFPDPKELIKELHEQGFKVVTI 83 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhCCCCceeeccccCCCHHHHHHHHHHCCCEEEEE
Confidence 4566666666666667777666554221 11 1111236888888888888765
No 455
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.34 E-value=2.6e+02 Score=24.83 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=12.4
Q ss_pred HHHHHHHcCCeEEEcccccCC
Q 024292 238 VKAACDELGITLIAYCPIAQD 258 (269)
Q Consensus 238 l~~~~~~~gi~via~~pl~~G 258 (269)
-++.+.+.|+-+++.+.+-..
T Consensus 246 ni~~~a~tGvD~Isvg~lt~s 266 (277)
T PRK05742 246 TLRVIAETGVDYISIGAMTKD 266 (277)
T ss_pred HHHHHHHcCCCEEEEChhhcC
Confidence 345555677777766655443
No 456
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=24.30 E-value=5.4e+02 Score=23.34 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=11.2
Q ss_pred HHHHHHHCCCCeeec
Q 024292 80 AFDTSLDNGITFFDT 94 (269)
Q Consensus 80 ~l~~A~~~Gin~~DT 94 (269)
..+.|.++|+..++-
T Consensus 157 aA~~a~~aGfDgVei 171 (338)
T cd02933 157 AARNAIEAGFDGVEI 171 (338)
T ss_pred HHHHHHHcCCCEEEE
Confidence 344567899999886
No 457
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.23 E-value=4.5e+02 Score=22.44 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHCCCCeeecc
Q 024292 76 AAKAAFDTSLDNGITFFDTA 95 (269)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DTA 95 (269)
...+.++.+-+.|++.++..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~ 33 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIW 33 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEc
Confidence 35667888999999999974
No 458
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=24.20 E-value=2.8e+02 Score=19.96 Aligned_cols=64 Identities=11% Similarity=-0.030 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhCCCccceEEeecCCC------CC-hHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHH
Q 024292 146 SVLAALKDSLFRLGLSSVELYQLHWAGI------WG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (269)
Q Consensus 146 ~i~~~l~~sL~~L~~dyiDl~~lH~p~~------~~-~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~ 209 (269)
.-.+++++.++.+|..-.++|+.-.+-. .| .+......-.+...|.++.-=+--++.+++.+++
T Consensus 20 ~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~ 90 (91)
T PF08734_consen 20 DRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIV 90 (91)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHh
Confidence 3556778888899999888888865432 23 4556667778888999988666667777777663
No 459
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=24.16 E-value=5.3e+02 Score=25.08 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=62.4
Q ss_pred ecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC-CccceEEeecC
Q 024292 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWA 171 (269)
Q Consensus 93 DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~-dyiDl~~lH~p 171 (269)
+.+..||. ++-|-++|+......+.+=|+|.|=+-. ..--+.+..-+++.-+.... +-+++.++|.|
T Consensus 119 E~~aVfGG---------~~~L~e~I~~~~~~y~P~~I~V~tTC~~---evIGDDi~a~i~~~~~~~~~p~~~pVi~v~Tp 186 (515)
T TIGR01286 119 EDAAVFGG---------LKNMVDGLQNCYALYKPKMIAVSTTCMA---EVIGDDLNAFIGNAKKEGFIPDDFPVPFAHTP 186 (515)
T ss_pred CCceeeCc---------HHHHHHHHHHHHHhcCCCEEEEeCCcHH---HHhhccHHHHHHHHHHhcCCCCCCceEEeeCC
Confidence 34556776 7777788876654332456667776632 22223343444443334332 23689999998
Q ss_pred CCCC-----hHHHHHHHHH-HH----------HcCCccEEE-ecCcCHHHHHHHHHHHHhcCCCeeE
Q 024292 172 GIWG-----NEGFIDGLGD-AV----------EQGLVKAVG-VSNYSEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 172 ~~~~-----~~~~~~~L~~-l~----------~~G~ir~iG-vSn~~~~~l~~~~~~~~~~~~~~~~ 221 (269)
+... .+..++++-+ +. ..++|--|| +..+ +..++++.++++..|+++.+
T Consensus 187 gF~Gs~~~Gyd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~-~gd~~eikrlL~~~Gi~~~~ 252 (515)
T TIGR01286 187 SFVGSHITGYDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETY-IGNFREIKRILSLMGVGYTL 252 (515)
T ss_pred CCcccHHHHHHHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCC-chhHHHHHHHHHHcCCCeEE
Confidence 8632 2233333332 21 125566664 3333 55666666667777766554
No 460
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.15 E-value=3.6e+02 Score=23.25 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=15.8
Q ss_pred hHHHHHHHcCCeEEEcc
Q 024292 237 GVKAACDELGITLIAYC 253 (269)
Q Consensus 237 ~l~~~~~~~gi~via~~ 253 (269)
.+++.++++|+.+.+|.
T Consensus 214 ~~v~~~~~~Gl~v~~wT 230 (265)
T cd08564 214 EFVKKAHENGLKVMTYF 230 (265)
T ss_pred HHHHHHHHcCCEEEEec
Confidence 58999999999999997
No 461
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.11 E-value=4.6e+02 Score=22.43 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhh
Q 024292 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKE 119 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~ 119 (269)
+.+++.++.+..++.|++.|+-...-.+ +.+.+.+..+.
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~--------a~~~i~~l~~~ 63 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDF--------AHEVFAELVKY 63 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCc--------HHHHHHHHHHH
Confidence 5689999999999999999997654333 36777544433
No 462
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=24.10 E-value=2.1e+02 Score=26.73 Aligned_cols=53 Identities=15% Similarity=0.374 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEcccCCccCC------C----cchhhHHHHHHHcCCeEEEcc
Q 024292 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYR------K----PEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~------~----~~~~~l~~~~~~~gi~via~~ 253 (269)
+.+.+.++++..++.++|++++.+....... + +.-.++++..+++|+.++.+.
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~ 103 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQDGYGDFTWDPERFPDPKQMIDELHDQGIKVVLWV 103 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSBTTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccccccccccccccccchHHHHHhHhhCCcEEEEEe
Confidence 5677777777777788888887665432211 1 122368888888998888764
No 463
>PRK00915 2-isopropylmalate synthase; Validated
Probab=24.10 E-value=6.6e+02 Score=24.31 Aligned_cols=24 Identities=4% Similarity=0.004 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHCCCCeeeccc
Q 024292 73 KMKAAKAAFDTSLDNGITFFDTAE 96 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~ 96 (269)
+.++..++.+.-.+.||..|+...
T Consensus 24 s~e~K~~ia~~L~~~Gv~~IE~G~ 47 (513)
T PRK00915 24 TVEEKLQIAKQLERLGVDVIEAGF 47 (513)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 457888888888899999999864
No 464
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=24.09 E-value=2.9e+02 Score=22.46 Aligned_cols=30 Identities=23% Similarity=0.169 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHcCCccEEEecCcCHHHHH
Q 024292 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLR 206 (269)
Q Consensus 176 ~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~ 206 (269)
..++.+.|++|++.| ++-.=+||.+.....
T Consensus 86 ~~g~~e~L~~l~~~g-~~~~i~Sn~~~~~~~ 115 (199)
T PRK09456 86 RPEVIAIMHKLREQG-HRVVVLSNTNRLHTT 115 (199)
T ss_pred CHHHHHHHHHHHhCC-CcEEEEcCCchhhHH
Confidence 468899999999988 444445665544433
No 465
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=24.04 E-value=3.3e+02 Score=26.01 Aligned_cols=119 Identities=14% Similarity=0.169 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcC-CccEEEecCc-CHHHHHHHHHHHHhcCCCeeE
Q 024292 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG-LVKAVGVSNY-SEKRLRNAYEKLKKRGIPLAS 221 (269)
Q Consensus 144 ~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G-~ir~iGvSn~-~~~~l~~~~~~~~~~~~~~~~ 221 (269)
++...-+++++.+-||++.--+......-..+.+.+.+++++....| .|--.|...+ +.+.|+++.++|++.++++.|
T Consensus 163 s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHV 242 (460)
T COG0076 163 SETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHV 242 (460)
T ss_pred cCcchhHHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEE
Confidence 44466788999999998754444443212256677777777777776 5556666666 348889999989988876544
Q ss_pred --EcccCCccCCCcchhhHHHHHHHcCCeEE-------EcccccCCcchhhhc
Q 024292 222 --NQVNYSLIYRKPEENGVKAACDELGITLI-------AYCPIAQDSPIFAAR 265 (269)
Q Consensus 222 --~Q~~~s~~~~~~~~~~l~~~~~~~gi~vi-------a~~pl~~G~l~~~~~ 265 (269)
.-.-+.+...++.. .. .++-.++--| .+.|.+.|..++.++
T Consensus 243 DAA~GG~~~pf~~~~~--~~-~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~ 292 (460)
T COG0076 243 DAAFGGFLLPFLEPDG--RW-DFGLEGVDSITVDGHKYGLAPIGCGVVLFRDE 292 (460)
T ss_pred EccccceeecccCccc--hh-hcCCCCceEEEECcccccCCCCCceEEEEECH
Confidence 44444443332221 10 1222222222 356777777666554
No 466
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=24.00 E-value=4.1e+02 Score=21.90 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHH
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGF 179 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~ 179 (269)
.+-+.+...++.+++-+|.+++..+.+|.....+.++.
T Consensus 127 ~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~~~~~~~ 164 (184)
T PRK04930 127 YPMSDILRPFELTAAMCRMHWLSPIIIYWARRQSPEEL 164 (184)
T ss_pred CCHHHHHHHHHHHHHHcCCeEcCcEEEecCCCCCHHHH
Confidence 46677889999999999999999999998765444443
No 467
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=23.98 E-value=6.1e+02 Score=23.80 Aligned_cols=114 Identities=8% Similarity=0.036 Sum_probs=62.5
Q ss_pred HHHHHHHHHCCCCeeeccc---------ccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 024292 78 KAAFDTSLDNGITFFDTAE---------VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (269)
Q Consensus 78 ~~~l~~A~~~Gin~~DTA~---------~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~ 148 (269)
.+.++...++|+|.+...- ..+.+.+ .+-+-++++...... -..+-+.-=+|. ...+.+.++
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~------~~~~~~ai~~l~~~g-~~~i~~dlI~Gl--P~qt~e~~~ 211 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHALHRPQK------RADVHQALEWIRAAG-FPILNIDLIYGI--PGQTHASWM 211 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCC------HHHHHHHHHHHHHcC-CCeEEEEeecCC--CCCCHHHHH
Confidence 3455666677888774322 2233322 333335555432110 012222223332 467888898
Q ss_pred HHHHHHHHHhCCCccceEEeec-CCC------CC-hH---HHH-HHHHHHHHcCCccEEEecCcCH
Q 024292 149 AALKDSLFRLGLSSVELYQLHW-AGI------WG-NE---GFI-DGLGDAVEQGLVKAVGVSNYSE 202 (269)
Q Consensus 149 ~~l~~sL~~L~~dyiDl~~lH~-p~~------~~-~~---~~~-~~L~~l~~~G~ir~iGvSn~~~ 202 (269)
+.++..+ +|+.++|.+|.+.- |.. .+ .+ +.+ .+.+.|.+.|. +.+++|||..
T Consensus 212 ~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 212 ESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred HHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 8888766 58999999998763 221 11 12 222 34566777785 5599999854
No 468
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=23.96 E-value=3.3e+02 Score=20.77 Aligned_cols=68 Identities=26% Similarity=0.145 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCe
Q 024292 177 EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (269)
Q Consensus 177 ~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~ 248 (269)
.++.+.|+.|+++| ++-.=+||.+...+...++.. . ...++.+-..-... ..+....+...|++.|+.
T Consensus 67 ~g~~e~l~~L~~~g-~~~~i~T~~~~~~~~~~~~~~-l-~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~ 134 (154)
T TIGR01549 67 RGAADLLKRLKEAG-IKLGIISNGSLRAQKLLLRKH-L-GDYFDLILGSDEFG-AKPEPEIFLAALESLGLP 134 (154)
T ss_pred cCHHHHHHHHHHCc-CeEEEEeCCchHHHHHHHHHH-H-HhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCC
Confidence 46889999999887 455556776666666665542 1 11232222222222 333333577888888874
No 469
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=23.89 E-value=3.7e+02 Score=21.32 Aligned_cols=16 Identities=6% Similarity=0.138 Sum_probs=8.5
Q ss_pred CChHHHHHHHHHHHHc
Q 024292 174 WGNEGFIDGLGDAVEQ 189 (269)
Q Consensus 174 ~~~~~~~~~L~~l~~~ 189 (269)
...+++++.|.++.++
T Consensus 180 ~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 180 QGIDELRAAIAKWLAE 195 (196)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 4455555555555544
No 470
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=23.86 E-value=1.1e+02 Score=27.23 Aligned_cols=48 Identities=17% Similarity=0.096 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhCCCccc--eEEe-ecCCCCChHHHHHHHHHHHHcCCccE
Q 024292 144 RQSVLAALKDSLFRLGLSSVE--LYQL-HWAGIWGNEGFIDGLGDAVEQGLVKA 194 (269)
Q Consensus 144 ~~~i~~~l~~sL~~L~~dyiD--l~~l-H~p~~~~~~~~~~~L~~l~~~G~ir~ 194 (269)
.+...+.+.+.|++||+++ | .++. +.+ .-.+.+++.+.+|+++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~-Dw~~~~~T~~~--~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISY-DWSDEYITTEP--EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccc-cCCCCeECCCH--HHHHHHHHHHHHHHHCCCEEe
Confidence 3567778889999999854 4 3332 322 236789999999999998754
No 471
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=23.86 E-value=4.8e+02 Score=22.61 Aligned_cols=147 Identities=17% Similarity=0.167 Sum_probs=80.8
Q ss_pred HHHHHCCCCeeecccc-cCC-CCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC
Q 024292 82 DTSLDNGITFFDTAEV-YGS-RASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG 159 (269)
Q Consensus 82 ~~A~~~Gin~~DTA~~-Yg~-g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~ 159 (269)
..|++.|..+||.=+- -|. |. ....++.+.....+ ...-|+..+|-.| +.+..+..+....- .-|
T Consensus 14 ~~a~~~gaDiID~K~P~~GaLGA-----~~~~vi~~i~~~~~-----~~~pvSAtiGDlp--~~p~~~~~aa~~~a-~~G 80 (235)
T PF04476_consen 14 EEALAGGADIIDLKNPAEGALGA-----LFPWVIREIVAAVP-----GRKPVSATIGDLP--MKPGTASLAALGAA-ATG 80 (235)
T ss_pred HHHHhCCCCEEEccCCCCCCCCC-----CCHHHHHHHHHHcC-----CCCceEEEecCCC--CCchHHHHHHHHHH-hcC
Confidence 3456999999997432 111 11 23566655544433 3466888887543 45666665554443 458
Q ss_pred CCccceEEeecCCCCChHHHHHHHHHH-------HHcCCccEEEecCcC------HHHHHHHHHHHHhcCCCeeEEccc-
Q 024292 160 LSSVELYQLHWAGIWGNEGFIDGLGDA-------VEQGLVKAVGVSNYS------EKRLRNAYEKLKKRGIPLASNQVN- 225 (269)
Q Consensus 160 ~dyiDl~~lH~p~~~~~~~~~~~L~~l-------~~~G~ir~iGvSn~~------~~~l~~~~~~~~~~~~~~~~~Q~~- 225 (269)
+|||-+=+.-..+ .++..+.|+.+ ..+.++-..+++.+. +..+-++ +.+.| ++.+++.
T Consensus 81 vdyvKvGl~g~~~---~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~---a~~aG--~~gvMlDT 152 (235)
T PF04476_consen 81 VDYVKVGLFGCKD---YDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEI---AAEAG--FDGVMLDT 152 (235)
T ss_pred CCEEEEecCCCCC---HHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHH---HHHcC--CCEEEEec
Confidence 9999887764432 23444444333 234567788888773 4444333 44444 3333332
Q ss_pred -----CCccCCCcch--hhHHHHHHHcCCeE
Q 024292 226 -----YSLIYRKPEE--NGVKAACDELGITL 249 (269)
Q Consensus 226 -----~s~~~~~~~~--~~l~~~~~~~gi~v 249 (269)
-++++.-..+ .+.++.|+++|+-.
T Consensus 153 a~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 153 ADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred ccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 3444433322 25788888888743
No 472
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.80 E-value=5.7e+02 Score=23.41 Aligned_cols=133 Identities=9% Similarity=0.015 Sum_probs=76.6
Q ss_pred CCcEEEEecCCCC-------------CCCCCHHHHHHHHHHHHHHhCCCccceEEeec-CCC-CChHHHHHHHHHHHHc-
Q 024292 126 EVEVTVATKFAAL-------------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHW-AGI-WGNEGFIDGLGDAVEQ- 189 (269)
Q Consensus 126 R~~v~I~tK~~~~-------------~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~-p~~-~~~~~~~~~L~~l~~~- 189 (269)
|..++|+|.+|-. ..+.+++.|..++....+.++. .++-+.+-. -++ ...+.+++++..+++.
T Consensus 100 r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~ 178 (345)
T PRK14457 100 RLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQDL 178 (345)
T ss_pred CCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhccc
Confidence 6788888877631 1146788999999887777653 356444443 333 3357788999998875
Q ss_pred CC-ccEEEecCc-CHHHHHHHHHHH-HhcCCCeeEEcccCCccCC-----------Ccch----hhHHHHHHHcCCeEEE
Q 024292 190 GL-VKAVGVSNY-SEKRLRNAYEKL-KKRGIPLASNQVNYSLIYR-----------KPEE----NGVKAACDELGITLIA 251 (269)
Q Consensus 190 G~-ir~iGvSn~-~~~~l~~~~~~~-~~~~~~~~~~Q~~~s~~~~-----------~~~~----~~l~~~~~~~gi~via 251 (269)
|. .|.|-||+. -+..++++.+.. +..+.....+.+..|..+. ...- ..+.++..+.|-.|..
T Consensus 179 ~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~i 258 (345)
T PRK14457 179 GIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSF 258 (345)
T ss_pred CCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEE
Confidence 43 467888876 345666665431 0000011223333332221 1111 1344556667877887
Q ss_pred cccccCCc
Q 024292 252 YCPIAQDS 259 (269)
Q Consensus 252 ~~pl~~G~ 259 (269)
--||-.|+
T Consensus 259 ey~LIpGv 266 (345)
T PRK14457 259 EYILLGGV 266 (345)
T ss_pred EEEEECCc
Confidence 77777775
No 473
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.78 E-value=3.1e+02 Score=24.33 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=22.5
Q ss_pred HHHHHHHHHHc-CCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcc
Q 024292 179 FIDGLGDAVEQ-GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 179 ~~~~L~~l~~~-G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~ 224 (269)
+-+++++.++. |.-+.||+|.++.+++.++.+. .++++++
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~------gaDyI~l 214 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETETEEQVREAVAA------GADIIMF 214 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc------CCCEEEE
Confidence 44445555544 3234577777777777666432 3555555
No 474
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=23.69 E-value=5.2e+02 Score=22.91 Aligned_cols=143 Identities=14% Similarity=0.105 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 024292 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (269)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL 155 (269)
-..++-+...+.|+|..|....-.. . .+.+++...+...+...+.+.+++.++...
T Consensus 19 IVa~Vt~~La~~g~NI~d~s~~~~~-------------------~-----~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~ 74 (286)
T PRK06027 19 IVAAVSNFLYEHGGNIVDADQFVDP-------------------E-----TGRFFMRVEFEGDGLIFNLETLRADFAALA 74 (286)
T ss_pred HHHHHHHHHHHCCCCEEEceeEEcC-------------------C-----CCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3455556667999999997543311 0 022222222221123455778888888888
Q ss_pred HHhCCCccceEEeecCCC--------CChHHHHHHHHHHHHcCCc--c-EEEecCcCHHHHHHHHHHHHhcCCCeeEEcc
Q 024292 156 FRLGLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQGLV--K-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (269)
Q Consensus 156 ~~L~~dyiDl~~lH~p~~--------~~~~~~~~~L~~l~~~G~i--r-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~ 224 (269)
+.|++|. .+|.+.. .+....+++|-+..+.|.+ . ..=+||.+ .+..+ |++.++|+.++
T Consensus 75 ~~l~l~i----~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~--~~~~l---A~~~gIp~~~~-- 143 (286)
T PRK06027 75 EEFEMDW----RLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD--DLRSL---VERFGIPFHHV-- 143 (286)
T ss_pred HHhCCEE----EEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcCh--hHHHH---HHHhCCCEEEe--
Confidence 8888642 3444322 1245668888888888764 2 22346653 22222 66667765443
Q ss_pred cCCccCCCcchhhHHHHHHHcCCeEEEcc
Q 024292 225 NYSLIYRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 225 ~~s~~~~~~~~~~l~~~~~~~gi~via~~ 253 (269)
+.+...+...+..+.+.+++.++-++.-.
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~~~~Dlivla 172 (286)
T PRK06027 144 PVTKETKAEAEARLLELIDEYQPDLVVLA 172 (286)
T ss_pred ccCccccchhHHHHHHHHHHhCCCEEEEe
Confidence 22223333333357888999888777643
No 475
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=23.69 E-value=5.3e+02 Score=23.00 Aligned_cols=74 Identities=23% Similarity=0.258 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEE
Q 024292 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 144 ~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~ 222 (269)
...+.+.+++.++.+| +++.+.......+.+...+.++.+..++ +..|=++..+...+...+ .+...++|+.++
T Consensus 61 ~~~~~~gi~~aa~~~G---~~l~i~~~~~~~~~~~q~~~i~~l~~~~-vdgIIl~~~~~~~~~~~l-~~~~~giPvV~~ 134 (343)
T PRK10936 61 WLSVNYGMVEEAKRLG---VDLKVLEAGGYYNLAKQQQQLEQCVAWG-ADAILLGAVTPDGLNPDL-ELQAANIPVIAL 134 (343)
T ss_pred HHHHHHHHHHHHHHhC---CEEEEEcCCCCCCHHHHHHHHHHHHHhC-CCEEEEeCCChHHhHHHH-HHHHCCCCEEEe
Confidence 4567778888888887 3555554332234455667788877765 887777776655554444 345556665533
No 476
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=23.58 E-value=64 Score=25.25 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=14.9
Q ss_pred HHHHHHHHCCCCeeecccccCC
Q 024292 79 AAFDTSLDNGITFFDTAEVYGS 100 (269)
Q Consensus 79 ~~l~~A~~~Gin~~DTA~~Yg~ 100 (269)
..+...++.|||+||---.+++
T Consensus 30 ~~i~~QL~~GiR~lDlrv~~~~ 51 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVWDGN 51 (146)
T ss_dssp HHHHHHHHTT--EEEEEEEEET
T ss_pred HhHHHHHhccCceEEEEEEcCC
Confidence 3678899999999997555444
No 477
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=23.47 E-value=4.9e+02 Score=24.45 Aligned_cols=137 Identities=16% Similarity=0.176 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 024292 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (269)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL 155 (269)
++.+-=-+|+|-|+--+-|| .|.+ .+=-++-..-. +=|.|+-++++ ++-+ ...+..+|
T Consensus 65 ~vlE~RiAaLEGG~aa~a~a----SG~A--------A~~~ai~~la~--aGD~iVss~~L----YGGT----~~lf~~tl 122 (426)
T COG2873 65 DVLEERIAALEGGVAALAVA----SGQA--------AITYAILNLAG--AGDNIVSSSKL----YGGT----YNLFSHTL 122 (426)
T ss_pred HHHHHHHHHhhcchhhhhhc----cchH--------HHHHHHHHhcc--CCCeeEeeccc----cCch----HHHHHHHH
Confidence 33444456889999877665 3322 22233333221 12778877887 3333 35677789
Q ss_pred HHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEE---ecC--cCHHHHHHHHHHHHhcCCCeeEEcccCCccC
Q 024292 156 FRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVG---VSN--YSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (269)
Q Consensus 156 ~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iG---vSn--~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~~~ 230 (269)
+++|. ++-++...+ .+.+++.+++ +.|+|= ++| .+.-.++.+.++|.++++|+.|-..-=+++
T Consensus 123 ~~~Gi---~v~fvd~~d-------~~~~~~aI~~-nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpy- 190 (426)
T COG2873 123 KRLGI---EVRFVDPDD-------PENFEAAIDE-NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPY- 190 (426)
T ss_pred HhcCc---EEEEeCCCC-------HHHHHHHhCc-ccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcce-
Confidence 99995 444444332 2333444433 233321 233 345667777788888887766643332221
Q ss_pred CCcchhhHHHHHHHcCCeEEEccc
Q 024292 231 RKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~via~~p 254 (269)
+=.+-++|..|+.+|.
T Consensus 191 --------l~rP~~hGADIVvHS~ 206 (426)
T COG2873 191 --------LCRPIEHGADIVVHSA 206 (426)
T ss_pred --------ecchhhcCCCEEEEee
Confidence 2223457777777664
No 478
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=23.45 E-value=5e+02 Score=22.66 Aligned_cols=159 Identities=17% Similarity=0.133 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHH--HHHHHhh-ccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 024292 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETL--LGRFIKE-RKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (269)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~--lG~al~~-~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l 151 (269)
+...+.++..-+.|..+|..++.=+.... +.. +...|++ .+. ++ |.-..+ .+.++..+...+
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~------~~t~~~a~~l~~~~g~-----~~-i~Hlt~---r~~n~~~l~~~L 79 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTR------DRTVRIVRRIKKETGI-----PT-VPHLTC---IGATREEIREIL 79 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcH------HHHHHHHHHHHHhcCC-----Ce-eEEeee---cCCCHHHHHHHH
Confidence 55566666666889999998765543221 333 3344442 221 11 122211 246677777777
Q ss_pred HHHHHHhCCCccceEEeec-CC------C-CChHHHHHHHHHHHHcCCccEEEecCcCH---------HHHHHHHHHHHh
Q 024292 152 KDSLFRLGLSSVELYQLHW-AG------I-WGNEGFIDGLGDAVEQGLVKAVGVSNYSE---------KRLRNAYEKLKK 214 (269)
Q Consensus 152 ~~sL~~L~~dyiDl~~lH~-p~------~-~~~~~~~~~L~~l~~~G~ir~iGvSn~~~---------~~l~~~~~~~~~ 214 (269)
... ..+|++ +++.|-. |. . .......+-++.+++..---+||+..++. +.++.+.+-. .
T Consensus 80 ~~~-~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~-~ 155 (272)
T TIGR00676 80 REY-RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKV-D 155 (272)
T ss_pred HHH-HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHH-H
Confidence 643 677753 3443432 11 1 11234555555565542235788887532 2334343221 2
Q ss_pred cCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccccCCcc
Q 024292 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSP 260 (269)
Q Consensus 215 ~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~pl~~G~l 260 (269)
.|..+-+-|.-|++ .... .+++.|++.|+.+ |+--|+.
T Consensus 156 aGA~f~iTQ~~fd~---~~~~-~~~~~~~~~gi~~----PIi~Gi~ 193 (272)
T TIGR00676 156 AGADYAITQLFFDN---DDYY-RFVDRCRAAGIDV----PIIPGIM 193 (272)
T ss_pred cCCCeEeeccccCH---HHHH-HHHHHHHHcCCCC----CEecccC
Confidence 35668888888865 1122 4888999997765 5545553
No 479
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=23.45 E-value=4.4e+02 Score=22.01 Aligned_cols=90 Identities=10% Similarity=0.145 Sum_probs=55.2
Q ss_pred HHhCCCccceEEee-cCCC--CChH----HHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEEcccCCc
Q 024292 156 FRLGLSSVELYQLH-WAGI--WGNE----GFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (269)
Q Consensus 156 ~~L~~dyiDl~~lH-~p~~--~~~~----~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~s~ 228 (269)
..-|.|+||+---- +|.. .+.+ .+...++.+++..-=--|.+-+++++.++++++. +.++..+...+..
T Consensus 29 ~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~----g~~~ind~~~~~~ 104 (210)
T PF00809_consen 29 VEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA----GADIINDISGFED 104 (210)
T ss_dssp HHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH----TSSEEEETTTTSS
T ss_pred HHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc----CcceEEecccccc
Confidence 44588999975332 3332 1222 3444555555411113477778899999999765 4565555444433
Q ss_pred cCCCcchhhHHHHHHHcCCeEEEcccc
Q 024292 229 IYRKPEENGVKAACDELGITLIAYCPI 255 (269)
Q Consensus 229 ~~~~~~~~~l~~~~~~~gi~via~~pl 255 (269)
. .++++++++++..++++-.-
T Consensus 105 ---~---~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 ---D---PEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp ---S---TTHHHHHHHHTSEEEEESES
T ss_pred ---c---chhhhhhhcCCCEEEEEecc
Confidence 1 15999999999999998766
No 480
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=23.41 E-value=5.5e+02 Score=23.08 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHCCCCeee
Q 024292 76 AAKAAFDTSLDNGITFFD 93 (269)
Q Consensus 76 ~~~~~l~~A~~~Gin~~D 93 (269)
.+...+..++..|++++-
T Consensus 97 ~~~~~~~~~l~~GvTtv~ 114 (398)
T cd01293 97 RAERALELAIAHGTTAIR 114 (398)
T ss_pred HHHHHHHHHHHcChhhee
Confidence 356677888999999873
No 481
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=23.26 E-value=86 Score=23.57 Aligned_cols=89 Identities=12% Similarity=0.179 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCCCccceEEeec-CCCCChHHHHHHHHHHHHcCCccEEEe----cCc-CHHHHHHHHHHHHhcCCCe
Q 024292 146 SVLAALKDSLFRLGLSSVELYQLHW-AGIWGNEGFIDGLGDAVEQGLVKAVGV----SNY-SEKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 146 ~i~~~l~~sL~~L~~dyiDl~~lH~-p~~~~~~~~~~~L~~l~~~G~ir~iGv----Sn~-~~~~l~~~~~~~~~~~~~~ 219 (269)
.+--.+-+++++||.. .+.++. ||... - .....-+.-.++- .+| +.+.+.++ +++. .+
T Consensus 12 eia~r~~ra~r~~Gi~---tv~v~s~~d~~s--~------~~~~ad~~~~~~~~~~~~~yl~~e~I~~i---a~~~--g~ 75 (110)
T PF00289_consen 12 EIAVRIIRALRELGIE---TVAVNSNPDTVS--T------HVDMADEAYFEPPGPSPESYLNIEAIIDI---ARKE--GA 75 (110)
T ss_dssp HHHHHHHHHHHHTTSE---EEEEEEGGGTTG--H------HHHHSSEEEEEESSSGGGTTTSHHHHHHH---HHHT--TE
T ss_pred HHHHHHHHHHHHhCCc---ceeccCchhccc--c------cccccccceecCcchhhhhhccHHHHhhH---hhhh--cC
Confidence 3455666778888754 444544 32211 0 2233333444441 122 44555444 5544 47
Q ss_pred eEEcccCCccCCCcchhhHHHHHHHcCCeEEEcc
Q 024292 220 ASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 220 ~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~ 253 (269)
+.+-..|..+.-++ ++.+.|.+.||.++.=+
T Consensus 76 ~~i~pGyg~lse~~---~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 76 DAIHPGYGFLSENA---EFAEACEDAGIIFIGPS 106 (110)
T ss_dssp SEEESTSSTTTTHH---HHHHHHHHTT-EESSS-
T ss_pred cccccccchhHHHH---HHHHHHHHCCCEEECcC
Confidence 77778888777554 48999999999987644
No 482
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=23.16 E-value=8.9e+02 Score=25.45 Aligned_cols=111 Identities=21% Similarity=0.231 Sum_probs=59.6
Q ss_pred ecccccCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCC
Q 024292 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG 172 (269)
Q Consensus 93 DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~ 172 (269)
+..-.||. |+-|-++|++...+.+.+-++|.|=+.. ..--+.+..-+++.-++++ +.++.++.|.
T Consensus 89 E~diVfGG---------~~kL~~aI~~~~~~~~P~~I~V~tTC~~---elIGDDi~~v~~~~~~~~~---~pvi~v~tpG 153 (917)
T PRK14477 89 ENDVIFGG---------EKKLYRAILELAERYQPKAVFVYATCVT---ALTGDDVEAVCKAAAEKVG---IPVIPVNTPG 153 (917)
T ss_pred cCceeeCc---------HHHHHHHHHHHHHhcCCCEEEEECCchH---HHhccCHHHHHHHHHHhhC---CcEEEEECCC
Confidence 34457775 7788888887654332456667776532 2222223333333222333 5788999887
Q ss_pred CCC-----hHHHHHHH-HHHHH--------cCCccEEEecCcCHHHHHHHHHHHHhcCCCe
Q 024292 173 IWG-----NEGFIDGL-GDAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 173 ~~~-----~~~~~~~L-~~l~~--------~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~ 219 (269)
... ....++++ +.+.. .+.|--||-.|+. ..+.++.++++..|+++
T Consensus 154 F~gs~~~G~~~a~~al~~~l~~~~~p~~~~~~~VNliG~~~~~-gd~~elk~lL~~~Gi~v 213 (917)
T PRK14477 154 FIGDKNIGNRLAGEALLKHVIGTAEPEVTTPYDINLIGEYNIA-GDLWGMLPLFDRLGIRV 213 (917)
T ss_pred ccCchhhHHHHHHHHHHHHHHhhcCCCCCCCCcEEEECCCCCc-chHHHHHHHHHHcCCeE
Confidence 522 12223332 33332 3567788866663 34455555566677664
No 483
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=23.16 E-value=3.6e+02 Score=20.90 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=52.7
Q ss_pred HHHHHhhccCCCCCCcEEEEecCCCCC----CCCCHHHHHHHHHHHHHHhC--CCccceEEeec--CCCCChHHHHHHHH
Q 024292 113 LGRFIKERKQRDPEVEVTVATKFAALP----WRLGRQSVLAALKDSLFRLG--LSSVELYQLHW--AGIWGNEGFIDGLG 184 (269)
Q Consensus 113 lG~al~~~~~~~~R~~v~I~tK~~~~~----~~~~~~~i~~~l~~sL~~L~--~dyiDl~~lH~--p~~~~~~~~~~~L~ 184 (269)
|-++++.... +...++++...-+.. .+.-.+.+.+..+...++|+ .+.+.+.+.-. |..|-...+-++|+
T Consensus 7 I~~~~~~~~~--~~~~llfsaHgiP~~~~~~gd~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~l~ 84 (135)
T cd00419 7 IREALAELPR--EKDRLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALE 84 (135)
T ss_pred HHHHHHhcCC--CCCEEEEEcCCCHHHHhhCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCCCHHHHHH
Confidence 3445544321 135666666653310 12235677777777788888 44445544421 33344456888999
Q ss_pred HHHHcCCccEEEec--CcCHHHHHHHHHH
Q 024292 185 DAVEQGLVKAVGVS--NYSEKRLRNAYEK 211 (269)
Q Consensus 185 ~l~~~G~ir~iGvS--n~~~~~l~~~~~~ 211 (269)
+|.++|. +.|=|. +|-.+.++.+.++
T Consensus 85 ~l~~~G~-~~i~v~p~gF~~D~~Etl~di 112 (135)
T cd00419 85 ELAKEGV-KNVVVVPIGFVSDHLETLYEL 112 (135)
T ss_pred HHHHcCC-CeEEEECCccccccHHHHHHH
Confidence 9999983 333332 2444556655554
No 484
>PRK09701 D-allose transporter subunit; Provisional
Probab=23.14 E-value=5.1e+02 Score=22.62 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHHHHhcCCCeeEE
Q 024292 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (269)
Q Consensus 144 ~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~ 222 (269)
...+.+.+++.++..|. ++.++-.+...+.....+.++.+..++ +..|=+...++......+..+.+.++|+.++
T Consensus 39 ~~~~~~gi~~~a~~~g~---~v~~~~~~~~~~~~~~~~~i~~l~~~~-vDgiIi~~~~~~~~~~~l~~~~~~giPvV~~ 113 (311)
T PRK09701 39 WVDMKKGIEDEAKTLGV---SVDIFASPSEGDFQSQLQLFEDLSNKN-YKGIAFAPLSSVNLVMPVARAWKKGIYLVNL 113 (311)
T ss_pred HHHHHHHHHHHHHHcCC---eEEEecCCCCCCHHHHHHHHHHHHHcC-CCEEEEeCCChHHHHHHHHHHHHCCCcEEEe
Confidence 56678888888888773 555542222234566778888887765 7777776655444433333345556775544
No 485
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=23.14 E-value=1e+02 Score=20.31 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCCeeEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 024292 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (269)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via 251 (269)
.++++++.+++.|.+...+ .+.+-+... ..+.+.|++.||.++.
T Consensus 16 ~~~~~~~~a~~~g~~~v~i-TDh~~~~~~---~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI-TDHGNLFGA---VEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE-eeCCcccCH---HHHHHHHHHcCCeEEE
Confidence 3555666666677654333 233211111 1477888888887764
No 486
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=23.07 E-value=51 Score=21.61 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=18.3
Q ss_pred ceeeEeCCCCcccccceecccc
Q 024292 36 EDKVKLGGSDLKVTKLGVGAWS 57 (269)
Q Consensus 36 m~~~~lg~tg~~vs~lglG~~~ 57 (269)
...+.|+.+|+.||.+-+|+..
T Consensus 15 s~~~~l~dtglrvpv~KmGtgw 36 (61)
T PF15221_consen 15 SLGRALRDTGLRVPVIKMGTGW 36 (61)
T ss_pred cccccccccccCCceeeecchH
Confidence 3467889999999999999873
No 487
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=23.01 E-value=2.9e+02 Score=22.75 Aligned_cols=66 Identities=17% Similarity=0.108 Sum_probs=36.3
Q ss_pred HHhCCCccceEEeecCCCCChHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHHHHHHhcCCCeeEEcccCC
Q 024292 156 FRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (269)
Q Consensus 156 ~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~~~~~~Q~~~s 227 (269)
.++|.|++=+.+-......-..+....|.++... .+..+||- |.+.+.+.+++.. ..++.+|+.-+
T Consensus 16 ~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~-----~~~d~Vqlhg~ 82 (203)
T cd00405 16 AEAGADAIGFIFAPKSPRYVSPEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEE-----LGLDVVQLHGD 82 (203)
T ss_pred HHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHh-----cCCCEEEECCC
Confidence 3677766655433211111113444444444433 36778875 6676766666543 46788888754
No 488
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=22.98 E-value=2e+02 Score=26.04 Aligned_cols=53 Identities=9% Similarity=0.227 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEcccCC------ccC--C--CcchhhHHHHHHHcCCeEEEcc
Q 024292 201 SEKRLRNAYEKLKKRGIPLASNQVNYS------LIY--R--KPEENGVKAACDELGITLIAYC 253 (269)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~Q~~~s------~~~--~--~~~~~~l~~~~~~~gi~via~~ 253 (269)
+.++++++++..++.++|++++.+... .++ + -+.-.++++..+++|+.++.+.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~ 84 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHTDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIV 84 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHhCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEe
Confidence 456666666666666666666533321 111 1 1111257777777787777653
No 489
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=22.93 E-value=5.3e+02 Score=22.74 Aligned_cols=105 Identities=17% Similarity=0.136 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeec-CCC---CChHHHHHHHHHHHH--cCC-ccEEEecCcCHHHHHHHHHHHH
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHW-AGI---WGNEGFIDGLGDAVE--QGL-VKAVGVSNYSEKRLRNAYEKLK 213 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~-p~~---~~~~~~~~~L~~l~~--~G~-ir~iGvSn~~~~~l~~~~~~~~ 213 (269)
..+.+.+++-++..++ -|+ |=+++-. -.. .+.+|-.+.++..++ .|+ ---.|++. +.+...+..+.++
T Consensus 22 ~iD~~~l~~li~~l~~-~Gv---~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~ 96 (296)
T TIGR03249 22 SFDEAAYRENIEWLLG-YGL---EALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAE 96 (296)
T ss_pred CcCHHHHHHHHHHHHh-cCC---CEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHH
Confidence 4677777777776665 454 4444432 111 345555555554444 343 34567764 5666666667777
Q ss_pred hcCCCeeEEcccCCccCCCcchhhHHHH----HHHcCCeEEEcc
Q 024292 214 KRGIPLASNQVNYSLIYRKPEENGVKAA----CDELGITLIAYC 253 (269)
Q Consensus 214 ~~~~~~~~~Q~~~s~~~~~~~~~~l~~~----~~~~gi~via~~ 253 (269)
..|..-.++..+|-.- .. +++++++ |...+++++.|.
T Consensus 97 ~~Gadav~~~pP~y~~-~s--~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 97 KAGADGYLLLPPYLIN-GE--QEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred HhCCCEEEECCCCCCC-CC--HHHHHHHHHHHHhccCCCEEEEe
Confidence 7787655555554321 11 2245554 444689999998
No 490
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=22.91 E-value=3.2e+02 Score=27.92 Aligned_cols=85 Identities=15% Similarity=0.063 Sum_probs=53.3
Q ss_pred EEeecCCCCChHHHHHHHHHHHHcCCccEEEecCcCHHHHHHH------------HHHHHhcCCCeeEEcccCCccCCCc
Q 024292 166 YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA------------YEKLKKRGIPLASNQVNYSLIYRKP 233 (269)
Q Consensus 166 ~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~~~~~l~~~------------~~~~~~~~~~~~~~Q~~~s~~~~~~ 233 (269)
+.+|.+.+.....+++++++---+..|.-.|+|.-..+.. +. .+.+-..| -++++-+.++-+.+
T Consensus 203 Ivv~GHnp~l~~~iv~~~ee~~l~~~i~~~G~cCt~~d~~-R~~~~~~~~g~~~~qe~~i~tG-~~D~~vvD~qCi~~-- 278 (731)
T cd01916 203 ILVIGHNVAPGAEIMDYLEENGLEDKVEVGGICCTAIDLT-RYNEKAKVVGPLSRQLKVVRSG-IADVVVVDEQCIRA-- 278 (731)
T ss_pred EEEECCCCccHHHHHHHHhccchhhCceEEEEecccchHh-hhccCCCccCcHHHHHHHHHcC-CCcEEEEecccCcc--
Confidence 5566666566778888877444444788888887655533 22 01111122 35555455443332
Q ss_pred chhhHHHHHHHcCCeEEEcccccC
Q 024292 234 EENGVKAACDELGITLIAYCPIAQ 257 (269)
Q Consensus 234 ~~~~l~~~~~~~gi~via~~pl~~ 257 (269)
++.+.|++.|.++|+.++-.+
T Consensus 279 ---~I~eiA~kyG~g~I~tt~r~~ 299 (731)
T cd01916 279 ---DILEEAQKLGIPVIATNDKIM 299 (731)
T ss_pred ---cHHHHHHHhCCCEEEechhhh
Confidence 599999999999999988654
No 491
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=22.90 E-value=2.3e+02 Score=21.89 Aligned_cols=19 Identities=16% Similarity=0.476 Sum_probs=10.5
Q ss_pred HHHHHHHcCCeEEEccccc
Q 024292 238 VKAACDELGITLIAYCPIA 256 (269)
Q Consensus 238 l~~~~~~~gi~via~~pl~ 256 (269)
+.+.+.+.+-+|+.++|=.
T Consensus 44 le~~~~~~~faIvl~TpDD 62 (125)
T PF10137_consen 44 LEEAADSVDFAIVLFTPDD 62 (125)
T ss_pred HHHHhccCCEEEEEEcccc
Confidence 5555555566666665533
No 492
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=22.87 E-value=6.1e+02 Score=23.41 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHCCCCeeecc
Q 024292 73 KMKAAKAAFDTSLDNGITFFDTA 95 (269)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA 95 (269)
+.++..++++.-.+.||..|+..
T Consensus 24 s~e~k~~ia~~L~~~GV~~IE~G 46 (378)
T PRK11858 24 TNEEKLAIARMLDEIGVDQIEAG 46 (378)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEe
Confidence 44788889998889999999975
No 493
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=22.77 E-value=4.8e+02 Score=22.16 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=26.3
Q ss_pred CeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEc
Q 024292 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (269)
Q Consensus 218 ~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~ 252 (269)
.+.+.==+||++++.... ++.+..++.|+.|+..
T Consensus 185 ~Ivl~GrpY~~~D~~in~-~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 185 AIVLLGRPYNIYDPFINM-GIPDKLRSLGVPVITE 218 (221)
T ss_pred eEEEEcCCCcCCCcccCC-chHHHHHHCCCeeeCc
Confidence 355556688888876654 5999999999999864
No 494
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=22.76 E-value=3.3e+02 Score=21.79 Aligned_cols=79 Identities=24% Similarity=0.243 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHHc--CCccEEEecCcCHHHHHHHHHHHHhcCCC
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~--G~ir~iGvSn~~~~~l~~~~~~~~~~~~~ 218 (269)
..+.+.+.+.+++-.+.+|.+ ++++|-. ...++++.+.+..+. |.|-.=|--+|..-.+..++.. +.
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~~-~~~~QSN-----~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~-----~~ 93 (146)
T PRK13015 25 HETLADVEALCRAAAEALGLE-VEFRQSN-----HEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAA-----LE 93 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEeeC-----cHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHc-----CC
Confidence 356788999999999999974 6766654 346888998888543 5565556667777777777665 45
Q ss_pred eeEEcccCCccC
Q 024292 219 LASNQVNYSLIY 230 (269)
Q Consensus 219 ~~~~Q~~~s~~~ 230 (269)
..++.+..|-.+
T Consensus 94 ~P~VEVHiSNi~ 105 (146)
T PRK13015 94 LPVIEVHISNVH 105 (146)
T ss_pred CCEEEEEcCCcc
Confidence 667777776554
No 495
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=22.74 E-value=1e+02 Score=26.32 Aligned_cols=99 Identities=10% Similarity=0.063 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCC-CChHHHHHHHHHHHHcCCcc------EEEecCcCHHHHHHHHHHHHhcCC
Q 024292 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVK------AVGVSNYSEKRLRNAYEKLKKRGI 217 (269)
Q Consensus 145 ~~i~~~l~~sL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L~~l~~~G~ir------~iGvSn~~~~~l~~~~~~~~~~~~ 217 (269)
......++..-+..+...|+-+++-..+. ...+|.+.-.++|.+.|.-. +-|+++. +.+.++.++... -
T Consensus 76 ~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTL--DSvvRA~kVF~~--~ 151 (235)
T COG2949 76 RYYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTL--DSVVRARKVFGT--N 151 (235)
T ss_pred HhHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHH--HHHHHHHHHcCc--C
Confidence 34555666666666777788888887665 45678888888999998532 4455543 445555444321 2
Q ss_pred CeeEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 024292 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (269)
Q Consensus 218 ~~~~~Q~~~s~~~~~~~~~~l~~~~~~~gi~via~~p 254 (269)
.+.++--.||. | ..+=.|+.+||.-+++..
T Consensus 152 ~ftIItQ~FHc-----e--RAlfiA~~~gIdAic~~a 181 (235)
T COG2949 152 DFTIITQRFHC-----E--RALFIARQMGIDAICFAA 181 (235)
T ss_pred cEEEEeccccc-----H--HHHHHHHHhCCceEEecC
Confidence 46666555553 2 378889999999988764
No 496
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=22.73 E-value=6.4e+02 Score=23.66 Aligned_cols=54 Identities=17% Similarity=0.041 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCC-CCChHHHHHHHHHHHHcCCccEEE
Q 024292 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAG-IWGNEGFIDGLGDAVEQGLVKAVG 196 (269)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~-~~~~~~~~~~L~~l~~~G~ir~iG 196 (269)
.+++.+.+.+.+.+.-...+ .+-+.+-... +.-...+.+.|+.+++.|.--+|+
T Consensus 54 ~t~~evl~ev~~d~~~~~~~-~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~ 108 (404)
T TIGR03278 54 IPPQVVLGEVQTSLGFRTGR-DTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLG 108 (404)
T ss_pred CCHHHHHHHHHHHHHHhcCC-CCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEe
Confidence 34445555555544433211 2333333331 123345555555555555444444
No 497
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=22.72 E-value=4.3e+02 Score=21.65 Aligned_cols=100 Identities=14% Similarity=0.229 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCC---CChHHHHHHHHHHHHcCCccEEEecCcC--HHHHHHHHHHHHhcCCCe
Q 024292 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYS--EKRLRNAYEKLKKRGIPL 219 (269)
Q Consensus 145 ~~i~~~l~~sL~~L~~dyiDl~~lH~p~~---~~~~~~~~~L~~l~~~G~ir~iGvSn~~--~~~l~~~~~~~~~~~~~~ 219 (269)
......+.+.++..+..- +-+.+--.+. .......+.+..|++.|- .+.+.+|. ...+..+.. .+|
T Consensus 99 ~~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~~------l~~ 169 (241)
T smart00052 99 PDLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLKR------LPV 169 (241)
T ss_pred chHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHHh------CCC
Confidence 345566777777766542 2333322221 223455589999999993 35666663 233333322 367
Q ss_pred eEEcccCCccCCCcc-------hhhHHHHHHHcCCeEEEcc
Q 024292 220 ASNQVNYSLIYRKPE-------ENGVKAACDELGITLIAYC 253 (269)
Q Consensus 220 ~~~Q~~~s~~~~~~~-------~~~l~~~~~~~gi~via~~ 253 (269)
+.+-+..+++..-.. -..++..|+..|+.+++-.
T Consensus 170 d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 210 (241)
T smart00052 170 DLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG 210 (241)
T ss_pred CeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec
Confidence 776666554432211 1247889999999988743
No 498
>PRK05443 polyphosphate kinase; Provisional
Probab=22.60 E-value=3.6e+02 Score=27.32 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=48.9
Q ss_pred EeecCCCCChHHHHHHHHHHHHcCCccEEEecCc---CHHHHHHHHHHHHhcCCCeeEEcccCCc-cCCCcchhhHHHHH
Q 024292 167 QLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNYSL-IYRKPEENGVKAAC 242 (269)
Q Consensus 167 ~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvSn~---~~~~l~~~~~~~~~~~~~~~~~Q~~~s~-~~~~~~~~~l~~~~ 242 (269)
+||.|- ....-+++.+++....-.|.+|=++-| +-..+.+++..|.+.|..+.++ ++... ++... ........
T Consensus 342 LLh~PY-~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~V~vl-ve~karfde~~-n~~~~~~L 418 (691)
T PRK05443 342 LLHHPY-ESFDPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTVL-VELKARFDEEA-NIRWARRL 418 (691)
T ss_pred EEECCc-cCchHHHHHHHHhccCCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCEEEEE-EccCccccHHH-HHHHHHHH
Confidence 344442 234667788888889999999998877 2244555555567777655443 33332 22111 11355667
Q ss_pred HHcCCeEE
Q 024292 243 DELGITLI 250 (269)
Q Consensus 243 ~~~gi~vi 250 (269)
++.|+.|+
T Consensus 419 ~~aGv~V~ 426 (691)
T PRK05443 419 EEAGVHVV 426 (691)
T ss_pred HHcCCEEE
Confidence 77899884
No 499
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=22.57 E-value=3.8e+02 Score=22.71 Aligned_cols=72 Identities=25% Similarity=0.307 Sum_probs=38.8
Q ss_pred HHHHHHHcCCccEEEecC---cCHH--HHHHHHHHHHhcCCCeeEEcccCC-ccCCCcch--------hhHHHHHHHcCC
Q 024292 182 GLGDAVEQGLVKAVGVSN---YSEK--RLRNAYEKLKKRGIPLASNQVNYS-LIYRKPEE--------NGVKAACDELGI 247 (269)
Q Consensus 182 ~L~~l~~~G~ir~iGvSn---~~~~--~l~~~~~~~~~~~~~~~~~Q~~~s-~~~~~~~~--------~~l~~~~~~~gi 247 (269)
.++...+.| ...+.+.. +... .+.++.+.++..++.+...+...+ ++...... ...++.|++.|+
T Consensus 20 ~l~~~~~~G-~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~ 98 (274)
T COG1082 20 ILRKAAELG-FDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELGA 98 (274)
T ss_pred HHHHHHHhC-CCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcCC
Confidence 344444555 55555553 1111 255555556666666666665555 44443321 137788888887
Q ss_pred eEEEccc
Q 024292 248 TLIAYCP 254 (269)
Q Consensus 248 ~via~~p 254 (269)
.++...+
T Consensus 99 ~~vv~~~ 105 (274)
T COG1082 99 KVVVVHP 105 (274)
T ss_pred CeEEeec
Confidence 7665444
No 500
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=22.54 E-value=3.1e+02 Score=21.79 Aligned_cols=79 Identities=23% Similarity=0.321 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCChHHHHHHHHHHHH--cCCccEEEecCcCHHHHHHHHHHHHhcCCC
Q 024292 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE--QGLVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (269)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~--~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~ 218 (269)
..+.+.+.+.+++--+.+|.+ ++++|-.. ..++++.+.+..+ +|.|-.=|--+|+.-.+..++.. +.
T Consensus 23 ~~tl~~i~~~l~~~a~~~g~~-v~~~QSN~-----Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~-----~~ 91 (140)
T cd00466 23 TTTLADIEALLRELAAELGVE-VEFFQSNH-----EGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAA-----VS 91 (140)
T ss_pred cCCHHHHHHHHHHHHHHcCCE-EEEEeeCc-----HHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHc-----CC
Confidence 466888999999999999974 77777653 4688888888865 35555556666777777777665 45
Q ss_pred eeEEcccCCccC
Q 024292 219 LASNQVNYSLIY 230 (269)
Q Consensus 219 ~~~~Q~~~s~~~ 230 (269)
..++.+..|-.+
T Consensus 92 ~P~VEVHiSNi~ 103 (140)
T cd00466 92 IPVIEVHISNIH 103 (140)
T ss_pred CCEEEEecCCcc
Confidence 677777776554
Done!