Query 024293
Match_columns 269
No_of_seqs 165 out of 1194
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:30:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0325 Predicted enzyme with 100.0 1.6E-49 3.5E-54 343.5 25.4 223 35-265 2-228 (228)
2 cd06822 PLPDE_III_YBL036c_euk 100.0 1.6E-46 3.4E-51 330.4 26.2 221 36-261 1-227 (227)
3 TIGR00044 pyridoxal phosphate 100.0 9E-45 2E-49 320.4 26.9 224 34-263 2-229 (229)
4 cd06824 PLPDE_III_Yggs_like Py 100.0 4.5E-44 9.7E-49 314.8 25.4 216 36-262 2-224 (224)
5 PF01168 Ala_racemase_N: Alani 100.0 1.3E-41 2.8E-46 296.4 22.7 209 32-264 2-218 (218)
6 cd00635 PLPDE_III_YBL036c_like 100.0 3.9E-41 8.4E-46 295.5 25.9 216 32-261 4-222 (222)
7 KOG3157 Proline synthetase co- 100.0 3.3E-41 7.1E-46 285.2 20.3 238 26-268 1-242 (244)
8 cd06815 PLPDE_III_AR_like_1 Ty 100.0 1.1E-39 2.4E-44 304.7 23.7 213 31-265 6-229 (353)
9 COG0787 Alr Alanine racemase [ 100.0 8.1E-39 1.8E-43 296.8 21.5 207 31-267 9-227 (360)
10 cd06825 PLPDE_III_VanT Type II 100.0 1.1E-38 2.3E-43 299.6 21.6 208 31-266 6-226 (368)
11 cd06826 PLPDE_III_AR2 Type III 100.0 1.8E-37 4E-42 290.9 22.8 215 31-265 6-230 (365)
12 TIGR00492 alr alanine racemase 100.0 2.4E-37 5.3E-42 290.0 22.5 213 31-266 7-230 (367)
13 PRK03646 dadX alanine racemase 100.0 2.3E-37 5E-42 289.3 19.4 202 31-265 8-217 (355)
14 PRK00053 alr alanine racemase; 100.0 1.2E-35 2.6E-40 278.3 22.0 209 31-266 8-227 (363)
15 PRK11930 putative bifunctional 100.0 1.2E-35 2.7E-40 303.9 23.2 210 32-265 465-686 (822)
16 cd00430 PLPDE_III_AR Type III 100.0 1E-34 2.2E-39 272.0 23.4 213 31-266 6-228 (367)
17 PRK13340 alanine racemase; Rev 100.0 2E-34 4.4E-39 273.9 23.6 214 31-264 45-269 (406)
18 cd06827 PLPDE_III_AR_proteobac 100.0 4.3E-34 9.2E-39 267.2 21.7 201 31-265 6-217 (354)
19 cd07376 PLPDE_III_DSD_D-TA_lik 100.0 3.3E-34 7.2E-39 266.5 19.7 212 35-265 1-227 (345)
20 cd06821 PLPDE_III_D-TA Type II 100.0 3.6E-34 7.7E-39 267.8 17.3 217 31-265 14-242 (361)
21 cd06817 PLPDE_III_DSD Type III 100.0 4.6E-33 1E-37 263.0 21.2 220 31-265 11-258 (389)
22 cd06820 PLPDE_III_LS_D-TA_like 100.0 3.4E-33 7.5E-38 260.4 19.3 216 31-265 8-234 (353)
23 cd06814 PLPDE_III_DSD_D-TA_lik 100.0 6E-32 1.3E-36 254.8 20.5 215 31-265 14-252 (379)
24 cd06811 PLPDE_III_yhfX_like Ty 100.0 1.1E-30 2.3E-35 246.5 24.0 212 32-266 34-266 (382)
25 cd06819 PLPDE_III_LS_D-TA Type 100.0 2.5E-29 5.4E-34 234.7 18.0 216 31-265 12-241 (358)
26 cd06813 PLPDE_III_DSD_D-TA_lik 100.0 9.9E-29 2.1E-33 233.7 21.2 214 32-265 17-266 (388)
27 cd06808 PLPDE_III Type III Pyr 100.0 1.8E-28 3.9E-33 211.6 20.3 202 36-257 1-211 (211)
28 cd06812 PLPDE_III_DSD_D-TA_lik 100.0 1.9E-27 4E-32 223.4 21.1 216 31-265 11-240 (374)
29 cd06818 PLPDE_III_cryptic_DSD 100.0 7.3E-27 1.6E-31 220.5 22.3 219 31-263 8-248 (382)
30 COG3457 Predicted amino acid r 99.9 2.6E-23 5.6E-28 186.8 20.5 213 29-262 6-229 (353)
31 COG3616 Predicted amino acid a 99.9 5.3E-21 1.2E-25 178.1 19.7 216 32-265 24-245 (368)
32 cd06810 PLPDE_III_ODC_DapDC_li 99.9 2E-20 4.4E-25 175.0 20.4 186 31-238 6-209 (368)
33 cd06839 PLPDE_III_Btrk_like Ty 99.9 2.2E-20 4.8E-25 175.7 18.8 210 32-262 13-242 (382)
34 cd06828 PLPDE_III_DapDC Type I 99.8 2.6E-19 5.6E-24 167.8 22.2 187 31-239 8-215 (373)
35 cd00622 PLPDE_III_ODC Type III 99.8 3.4E-19 7.4E-24 166.7 17.9 207 31-264 7-231 (362)
36 cd06842 PLPDE_III_Y4yA_like Ty 99.8 2.3E-18 4.9E-23 164.8 23.6 190 32-240 16-214 (423)
37 cd06843 PLPDE_III_PvsE_like Ty 99.8 1.6E-18 3.5E-23 163.2 21.7 186 32-238 8-212 (377)
38 TIGR03099 dCO2ase_PEP1 pyridox 99.8 1.4E-18 3.1E-23 164.6 19.7 206 32-260 31-256 (398)
39 TIGR01048 lysA diaminopimelate 99.8 4.3E-18 9.2E-23 162.2 21.6 186 32-239 31-237 (417)
40 PLN02537 diaminopimelate decar 99.8 4.9E-18 1.1E-22 161.7 21.6 183 32-237 24-228 (410)
41 cd06841 PLPDE_III_MccE_like Ty 99.8 2.6E-17 5.5E-22 155.2 22.4 186 32-237 13-210 (379)
42 PRK11165 diaminopimelate decar 99.5 5.6E-12 1.2E-16 120.7 19.3 177 32-241 32-229 (420)
43 COG0019 LysA Diaminopimelate d 99.3 4.4E-10 9.6E-15 106.7 20.3 185 32-239 33-238 (394)
44 cd06830 PLPDE_III_ADC Type III 99.3 1.9E-09 4E-14 103.0 22.7 199 32-237 11-231 (409)
45 cd06836 PLPDE_III_ODC_DapDC_li 99.2 2.4E-09 5.2E-14 101.3 21.3 184 32-238 9-215 (379)
46 PF02784 Orn_Arg_deC_N: Pyrido 99.2 7.2E-10 1.6E-14 98.9 15.4 182 32-237 1-203 (251)
47 cd06831 PLPDE_III_ODC_like_AZI 99.1 1.4E-08 3.1E-13 96.6 18.5 178 32-237 19-210 (394)
48 TIGR01047 nspC carboxynorsperm 99.0 9.7E-08 2.1E-12 90.5 20.7 178 32-238 9-200 (380)
49 TIGR01273 speA arginine decarb 98.9 3E-07 6.6E-12 92.0 23.9 200 32-237 63-283 (624)
50 cd06840 PLPDE_III_Bif_AspK_Dap 98.9 2.1E-07 4.6E-12 87.7 21.2 179 32-237 18-212 (368)
51 PRK05354 arginine decarboxylas 98.9 4.7E-07 1E-11 90.7 23.6 200 32-237 70-290 (634)
52 PRK08961 bifunctional aspartat 98.8 3.3E-07 7.1E-12 95.2 19.6 177 32-237 509-703 (861)
53 cd06829 PLPDE_III_CANSDC Type 98.7 2.2E-06 4.9E-11 80.1 19.4 144 32-202 7-164 (346)
54 PLN02439 arginine decarboxylas 98.7 7.4E-06 1.6E-10 81.2 23.5 195 33-236 6-226 (559)
55 KOG0622 Ornithine decarboxylas 98.2 0.00019 4E-09 67.8 17.9 180 31-237 61-253 (448)
56 PF00834 Ribul_P_3_epim: Ribul 86.8 14 0.00031 31.9 11.6 170 73-262 16-200 (201)
57 COG0036 Rpe Pentose-5-phosphat 73.9 63 0.0014 28.5 14.6 73 190-265 131-206 (220)
58 COG3589 Uncharacterized conser 67.4 7.6 0.00016 36.4 4.1 89 167-257 1-99 (360)
59 TIGR03693 ocin_ThiF_like putat 67.1 89 0.0019 31.9 11.7 117 32-152 102-232 (637)
60 COG0386 BtuE Glutathione perox 63.3 34 0.00074 28.6 6.8 36 156-196 26-63 (162)
61 KOG3111 D-ribulose-5-phosphate 57.8 1.3E+02 0.0028 26.3 13.6 70 190-265 134-206 (224)
62 cd06533 Glyco_transf_WecG_TagA 54.3 1.3E+02 0.0027 25.1 9.2 55 129-196 24-78 (171)
63 COG1166 SpeA Arginine decarbox 53.3 2.6E+02 0.0056 28.4 17.8 197 32-237 86-306 (652)
64 TIGR00696 wecB_tagA_cpsF bacte 51.0 37 0.0008 28.8 5.3 51 133-196 30-80 (177)
65 TIGR02356 adenyl_thiF thiazole 48.1 1.1E+02 0.0024 26.1 7.9 80 70-152 32-137 (202)
66 PRK08091 ribulose-phosphate 3- 47.3 2E+02 0.0044 25.4 16.3 136 108-262 74-213 (228)
67 PRK08005 epimerase; Validated 40.8 2.5E+02 0.0053 24.5 14.6 141 97-262 53-197 (210)
68 TIGR02355 moeB molybdopterin s 40.4 1.5E+02 0.0032 26.2 7.7 80 70-152 35-140 (240)
69 COG3454 Metal-dependent hydrol 39.9 62 0.0013 30.5 5.2 39 154-202 130-168 (377)
70 PRK05690 molybdopterin biosynt 38.7 1.5E+02 0.0033 26.2 7.5 80 70-152 43-148 (245)
71 PRK02048 4-hydroxy-3-methylbut 38.3 4.5E+02 0.0098 26.8 12.3 157 61-229 29-230 (611)
72 COG0533 QRI7 Metal-dependent p 38.2 3.2E+02 0.0069 25.8 9.7 115 32-151 43-172 (342)
73 COG4981 Enoyl reductase domain 38.2 4.5E+02 0.0097 26.8 13.2 125 31-194 70-217 (717)
74 COG1157 FliI Flagellar biosynt 36.7 1.3E+02 0.0028 29.3 7.0 63 139-205 240-320 (441)
75 COG0269 SgbH 3-hexulose-6-phos 36.6 1.8E+02 0.0039 25.7 7.3 56 60-115 56-119 (217)
76 PRK07534 methionine synthase I 35.9 1.6E+02 0.0035 27.5 7.5 65 130-199 149-214 (336)
77 COG2040 MHT1 Homocysteine/sele 35.5 1.1E+02 0.0023 28.3 6.0 67 128-200 148-217 (300)
78 COG3412 Uncharacterized protei 31.7 2.3E+02 0.0049 22.9 6.6 60 128-191 3-62 (129)
79 PRK09485 mmuM homocysteine met 30.2 2.5E+02 0.0054 25.7 7.7 61 130-196 158-220 (304)
80 cd00757 ThiF_MoeB_HesA_family 29.6 3.7E+02 0.008 23.2 8.4 80 70-152 32-137 (228)
81 PRK12475 thiamine/molybdopteri 29.2 4.1E+02 0.0088 24.8 9.0 80 70-152 35-142 (338)
82 COG4080 SpoU rRNA Methylase fa 28.2 1.5E+02 0.0032 24.4 5.0 67 38-111 8-81 (147)
83 PHA01627 DNA binding protein 27.7 2.1E+02 0.0046 22.4 5.6 54 107-164 20-73 (107)
84 PF02581 TMP-TENI: Thiamine mo 27.5 3.5E+02 0.0077 22.3 8.3 57 63-122 97-167 (180)
85 KOG0187 40S ribosomal protein 27.1 26 0.00056 28.1 0.5 14 6-19 74-87 (134)
86 cd02429 PTH2_like Peptidyl-tRN 26.4 2.6E+02 0.0056 22.1 6.1 45 128-174 56-100 (116)
87 cd01573 modD_like ModD; Quinol 26.0 1.9E+02 0.0042 26.1 6.1 67 69-138 190-261 (272)
88 COG2100 Predicted Fe-S oxidore 25.4 3.4E+02 0.0074 25.8 7.5 62 133-202 140-201 (414)
89 TIGR00343 pyridoxal 5'-phospha 24.8 79 0.0017 29.1 3.3 38 38-88 57-95 (287)
90 PRK07428 nicotinate-nucleotide 24.4 5.5E+02 0.012 23.5 8.7 58 65-122 199-261 (288)
91 PRK07877 hypothetical protein; 24.3 8.3E+02 0.018 25.5 11.1 88 60-152 109-222 (722)
92 PRK00694 4-hydroxy-3-methylbut 23.9 7.9E+02 0.017 25.1 11.6 134 62-203 34-212 (606)
93 PRK08072 nicotinate-nucleotide 23.7 5.6E+02 0.012 23.3 9.6 87 36-137 174-262 (277)
94 PRK05581 ribulose-phosphate 3- 23.6 4.5E+02 0.0097 22.1 18.3 167 73-262 20-204 (220)
95 PRK05096 guanosine 5'-monophos 23.4 6.4E+02 0.014 23.9 10.8 74 171-258 104-181 (346)
96 COG0821 gcpE 1-hydroxy-2-methy 22.3 4.7E+02 0.01 24.8 7.8 101 58-165 21-134 (361)
97 cd07937 DRE_TIM_PC_TC_5S Pyruv 22.1 5.7E+02 0.012 22.9 12.3 53 130-189 110-162 (275)
98 PRK10128 2-keto-3-deoxy-L-rham 21.1 4E+02 0.0088 24.0 7.2 122 18-149 27-167 (267)
99 cd01568 QPRTase_NadC Quinolina 21.0 6.1E+02 0.013 22.7 8.7 66 68-137 187-257 (269)
100 cd00331 IGPS Indole-3-glycerol 20.9 5.2E+02 0.011 21.9 15.4 171 60-262 10-207 (217)
101 PRK09722 allulose-6-phosphate 20.3 6E+02 0.013 22.4 13.7 138 104-262 61-204 (229)
102 PTZ00154 40S ribosomal protein 20.3 44 0.00096 27.1 0.6 17 5-21 73-89 (134)
103 PRK08644 thiamine biosynthesis 20.2 5.6E+02 0.012 22.0 7.8 80 70-152 39-144 (212)
No 1
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=100.00 E-value=1.6e-49 Score=343.53 Aligned_cols=223 Identities=49% Similarity=0.684 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHHHHHHHhCCCeeeeccHHHHHHHHHcCCC--CceeeeecC
Q 024293 35 VAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIGN 112 (269)
Q Consensus 35 ~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i~~l~~~G~~~fgva~i~EA~~lr~~i~~--~I~~~~lG~ 112 (269)
.+.+|+..++++|.++|..+||++..++|+||+|++.++.|+.++++|++.||+|++||+..+.+.+.. +|.|||||+
T Consensus 2 ~i~~nl~~v~~~I~~a~~~a~R~~~~V~LvAVSK~~~~~~I~~~~~aG~r~fGENrvQe~~~K~~~l~~~~~i~WHfIG~ 81 (228)
T COG0325 2 DIKENLAAVRERIAAAAERAGRNPGSVTLVAVSKTVPAEDIREAYEAGQRHFGENRVQEALDKIEALKDLPDIEWHFIGP 81 (228)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCCHHHHHHHHHcCChhhcchHHHHHHHHHHhcCcCCCeEEEEech
Confidence 378999999999999999999999999999999999999999999999999999999999999999765 499999999
Q ss_pred CChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeE
Q 024293 113 LQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLE 192 (269)
Q Consensus 113 ~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~ 192 (269)
+|+||++.++ +++++++|||++..|++|+++|...++ +++|+|+||+++|.+|.|+.|+++..++..+. .+|+|+
T Consensus 82 LQsNK~k~v~---~~~~~ihSlDr~klA~~l~kra~~~~~-~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~-~~~~L~ 156 (228)
T COG0325 82 LQSNKVKLVA---ENFDWIHSLDRLKLAKELNKRALELPK-PLNVLIQVNISGEESKSGVPPEELDELAQEVQ-ELPNLE 156 (228)
T ss_pred hhhhHHHHHH---hhcceeeecCHHHHHHHHHHHHHhCCC-CceEEEEEecCCccccCCCCHHHHHHHHHHHH-hCCCCe
Confidence 9999999999 579999999999999999999998887 89999999999999999999999999999999 999999
Q ss_pred EEEeEeeCCCCCC--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhhCCCCC
Q 024293 193 FCGLMTIGMPDYT--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 265 (269)
Q Consensus 193 i~GlmTH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~alyG~~p~ 265 (269)
++||||+++.+++ ....+|..+.++++++..+ +. ++..+|||||+||+.|+.+|+|+||+|++|||.++|
T Consensus 157 l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l~~~-~~--~~~~LSMGMS~D~e~AI~~GaT~VRIGtaiFg~r~~ 228 (228)
T COG0325 157 LRGLMTIPPLTDDPEEIFAVFRKLRKLFDELKAK-YP--PIDELSMGMSNDYEIAIAEGATMVRIGTAIFGARDY 228 (228)
T ss_pred EeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHh-cC--CCCeecCcCcccHHHHHHcCCCEEEEcHHhhCCCCC
Confidence 9999999997554 4567899999999999875 33 458899999999999999999999999999999876
No 2
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=100.00 E-value=1.6e-46 Score=330.43 Aligned_cols=221 Identities=59% Similarity=0.962 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHHHHHHHhCCCeeeeccHHHHHHHHHcCCCCceeeeecCCCh
Q 024293 36 AATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQS 115 (269)
Q Consensus 36 l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~lG~~~~ 115 (269)
+..|+..|++++.++|+. |.+.+++|+||+|+|+.+.++.++++|++.||+|++||+.++...++.+|.|||||++|+
T Consensus 1 ~~~~l~~i~~~i~~a~~~--r~~~~v~LvaVsK~~~~~~i~~~~~~G~~~fGENrvQe~~~K~~~l~~~i~wHfIG~LQ~ 78 (227)
T cd06822 1 LIANLKRIRQAVKRASKK--LPASKPRLVAVSKTKPAELIKEAYDAGQRHFGENYVQELIEKAPDLPIDIKWHFIGHLQS 78 (227)
T ss_pred ChHHHHHHHHHHHHHHHh--CCCCCcEEEEEECCCCHHHHHHHHHcCCccccCcHHHHHHHHHHhccCCceEEEECCCch
Confidence 357999999999988887 667789999999999999999999999999999999999999888766799999999999
Q ss_pred hcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhc--CCCceeEEEEEeCCCCCCccCCChhhHHHHHHHH-HhcCCCeE
Q 024293 116 NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETM--GRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV-SQNCPNLE 192 (269)
Q Consensus 116 ~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~--~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i-~~~~~~L~ 192 (269)
||++.++.. +.++++++|||++.++.|++++.+. ++ +++|+|+||+|+|.+|.|+.|+++.++++.| . .+|||+
T Consensus 79 NK~k~i~~~-~~~~~ihsvDs~~la~~L~~~a~~~~~~~-~~~VlIqVn~g~e~~K~Gv~~~e~~~l~~~i~~-~~~~L~ 155 (227)
T cd06822 79 NKVKKLLKV-PNLYMVETVDSEKLADKLNKAWEKLGERE-PLKVMVQVNTSGEESKSGLEPSEAVELVKHIIE-ECPNLK 155 (227)
T ss_pred hhHHHHhcc-ccccEEEecCCHHHHHHHHHHHHHhcCCC-CCcEEEEEeCCCCCCCCCCCHHHHHHHHHHHHh-hCCCce
Confidence 999999610 3689999999999999999999988 88 9999999999977799999999999999999 5 899999
Q ss_pred EEEeEeeCCCCCC---CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhhC
Q 024293 193 FCGLMTIGMPDYT---STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFG 261 (269)
Q Consensus 193 i~GlmTH~a~~~~---~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~alyG 261 (269)
+.|||||.+..++ .....|..+.++++.|++.+|+...+..+|||||+||+.++.+|+|+||||++|||
T Consensus 156 l~GLMt~~~~~~~~~~~~r~~f~~l~~l~~~L~~~~g~~~~~~~lSmGmS~D~~~Ai~~GsT~VRiGt~IFg 227 (227)
T cd06822 156 FSGLMTIGSFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMGMSADFEHAIEMGSTNVRVGSAIFG 227 (227)
T ss_pred EEEEEeeCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEecccHhHHHHHHcCCCEEeCCchhcC
Confidence 9999999997443 24568999999999998754654224789999999999999999999999999998
No 3
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=100.00 E-value=9e-45 Score=320.38 Aligned_cols=224 Identities=45% Similarity=0.678 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHHHHHHHhCCCeeeeccHHHHHHHHHcCCC--Cceeeeec
Q 024293 34 GVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIG 111 (269)
Q Consensus 34 ~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i~~l~~~G~~~fgva~i~EA~~lr~~i~~--~I~~~~lG 111 (269)
+.+..|+..|++++.++|+.+||++++++|+||||+...+.++.++++|+++||||+++||+++.+.+.. .+.||++|
T Consensus 2 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~l~aV~K~~~~~~i~~l~~~G~~~fg~~~~~Ea~~k~~~lr~~~~~~~~~ig 81 (229)
T TIGR00044 2 SDIIHYLEDIKTKIEAANTHVNRNPSKVKLLAVSKTKPASAIQIAYDAGQRAFGENYVQELVEKIKLLEDLGKLEWHFIG 81 (229)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHHHHcCCccccEEcHHHHHHHHHHhcccCCceEEEEC
Confidence 3578999999999999999999999999999999999988887788999999999999999985444321 46889999
Q ss_pred CCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCe
Q 024293 112 NLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNL 191 (269)
Q Consensus 112 ~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L 191 (269)
++|+++...++ ..++++++|||.++++.|++++.+.++ +++||||||||+||+|+||.|+++.++++.+. .+|+|
T Consensus 82 ~~q~~~~~~~~---~~~~l~~~vds~~~~~~l~~~a~~~~~-~~~V~l~vdtg~gm~R~G~~~~e~~~~~~~i~-~~~~l 156 (229)
T TIGR00044 82 PLQSNKDRLVV---ENFDWVHTIDSLKIAKKLNEQREKLQP-PLNVLLQINISDEESKSGIQPEELLELAIQIE-ELKHL 156 (229)
T ss_pred CCcchHHHHHh---hhcCEEEEECCHHHHHHHHHHHHhcCC-CceEEEEEECCCCCCCCCCCHHHHHHHHHHHh-cCCCC
Confidence 99999988776 468999999999999999999998888 99999999998779999999988999999998 99999
Q ss_pred EEEEeEeeCCCCCC--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhhCCC
Q 024293 192 EFCGLMTIGMPDYT--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAR 263 (269)
Q Consensus 192 ~i~GlmTH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~alyG~~ 263 (269)
++.|||||++++++ .....|+.+..+++.++.. |+..+...+|+|||+||+.++..|+|+||||+++||++
T Consensus 157 ~l~Gl~th~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~lS~G~t~~~~~a~~~g~tevR~G~~if~dr 229 (229)
T TIGR00044 157 KLRGLMTIGAPTDSHEDQEENFRFMKLLFWQIKQD-SPFGTIDTLSMGMSDDFEEAIAAGATMVRIGTAIFGAR 229 (229)
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhh-cCCCCCCEEeeeCcHhHHHHHHCCCCEEECChHHcCCC
Confidence 99999999998654 3345788888888888874 54112478999999999998889999999999999975
No 4
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=100.00 E-value=4.5e-44 Score=314.84 Aligned_cols=216 Identities=48% Similarity=0.666 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHHHHHHHhCCCeeeeccHHHHHH----HHHcCCCCceeeeec
Q 024293 36 AATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVE----KAAQLPDDLEWHFIG 111 (269)
Q Consensus 36 l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i~~l~~~G~~~fgva~i~EA~~----lr~~i~~~I~~~~lG 111 (269)
+.+|++.|++++.++|+..||++++++++||||+||++.+..++++|+++|||++++||++ ||+.. .+.|+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aVvKahG~~~v~~~~~~G~~~fgva~~~Ea~~k~~~Lr~~g--~~~~~~lg 79 (224)
T cd06824 2 IAENLAQVKQRIAQAAKQAGRDPSSVQLLAVSKTKPADAIREAYAAGQRHFGENYVQEALEKIEALRDLQ--DIEWHFIG 79 (224)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHHHHcCCcccCcChHHHHHHHHHHhccCC--CeeEEEEc
Confidence 5689999999999999999998888899999999999998655689999999999999997 55432 47789999
Q ss_pred CCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCe
Q 024293 112 NLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNL 191 (269)
Q Consensus 112 ~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L 191 (269)
++++++....+ ..++++++|+|.++++.|++.+.+.++ +++|||+||||++|+|+||.|+++.++++.+. .+|+|
T Consensus 80 ~~~~~~~~~~~---~~~~~~~~I~s~~~~~~l~~~a~~~g~-~~~v~l~id~~~Gm~R~Gi~~~~~~~~~~~i~-~~~~l 154 (224)
T cd06824 80 PIQSNKTKLIA---ENFDWVHSVDRLKIAKRLNDQRPAGLP-PLNVCIQVNISGEDSKSGVAPEDAAELAEAIS-QLPNL 154 (224)
T ss_pred CchhhhHHHHH---hhCCEEEecCCHHHHHHHHHHHHhcCC-CCcEEEEEEcCCCCCCCCCCHHHHHHHHHHHh-cCCCC
Confidence 99997744544 258999999999999999999988888 89999999997669999999988999999998 99999
Q ss_pred EEEEeEeeCCCCCCCcHHHHHHHHHH---HHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhhCC
Q 024293 192 EFCGLMTIGMPDYTSTPENFKTLAKC---RSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGA 262 (269)
Q Consensus 192 ~i~GlmTH~a~~~~~~~~~~~~~~~~---~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~alyG~ 262 (269)
+++|||||+++.++ ...|.+.|..+ .+.+++ .|+.+ ..+|+|||+++..++..++||||||++|||.
T Consensus 155 ~l~Gl~tH~a~~~~-~~~q~~~f~~~~~~~~~l~~-~~~~~--~~is~gnS~~~~~~~~~~~~~vRpG~~lyG~ 224 (224)
T cd06824 155 RLRGLMAIPAPTDD-EAAQRAAFKRLRQLFDQLKK-QYPDL--DTLSMGMSGDLEAAIAAGSTMVRIGTAIFGA 224 (224)
T ss_pred cEEEEEEeCCCCCC-hHHHHHHHHHHHHHHHHHHh-hCCCC--CEEeCcCcHhHHHHHHcCCCEEEcChHhcCC
Confidence 99999999997554 33344444444 566765 36654 6889999999998888899999999999995
No 5
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=100.00 E-value=1.3e-41 Score=296.37 Aligned_cols=209 Identities=26% Similarity=0.359 Sum_probs=180.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHHHHHHHhCCCeeeeccHHHHHHHHHcCCCCcee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEW 107 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~ 107 (269)
|+++|++|++.+++.+ ++..+++||+|+ ||...+......|++.|||++++||..+|+.. .+|
T Consensus 2 dl~al~~Ni~~~~~~~----------~~~~~l~~vvK~~ayg~~~~~~~~~~~~g~~~~~va~~~Ea~~lr~~g-~~i-- 68 (218)
T PF01168_consen 2 DLDALRHNIRKIRQRA----------GPGTKLRAVVKANAYGHGIVRVAKALAEGIDGFAVATLEEAEELREAG-API-- 68 (218)
T ss_dssp EHHHHHHHHHHHHHHH----------CTTSEEEEE-HHHHHTTHHHHHHHHHHHTCSEEEESSHHHHHHHHHTT-SEE--
T ss_pred CHHHHHHHHHHHHHHc----------CCCCEEEEEEcCCCcCccHHHHHHHHhcCCCEEEEeeHHHhhhHHhcC-Cce--
Confidence 7899999999999998 556789999999 45554444333369999999999999999988 666
Q ss_pred eeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhc
Q 024293 108 HFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQN 187 (269)
Q Consensus 108 ~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~ 187 (269)
+++++++++++..+++ ++++++|+|.++++.|++.+.+.++ +++|||+|||| |+|+||.|+++.++++.+. .
T Consensus 69 l~l~~~~~~~~~~~~~----~~~~~~v~s~~~~~~l~~~~~~~~~-~~~v~l~vdtG--~~R~G~~~~~~~~l~~~i~-~ 140 (218)
T PF01168_consen 69 LVLGPIPPEELEELVE----YNIIPTVDSLEQLEALSKAAKKQGK-PLKVHLKVDTG--MGRLGVRPEELEELAEAIK-A 140 (218)
T ss_dssp EEESESTGGGHHHHHH----TTEEEEE-SHHHHHHHHHHHHHHTS-TEEEEEEBESS--SSSSSBECHHHHHHHHHHH-H
T ss_pred EEEcCCChhhHHHHhh----CcEEEEEchhhHHHHHHHHHHHcCC-ceEEEEeeccc--ccccCCCHHHHHHHHHHHh-c
Confidence 6788899999999983 5999999999999999999999888 99999999999 9999999999999999999 8
Q ss_pred CCCeEEEEeEeeCCCCCC--CcHH-HHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHH-HcCCCeeeeChhhhCCC
Q 024293 188 CPNLEFCGLMTIGMPDYT--STPE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAI-EMGSTNVRIGSTIFGAR 263 (269)
Q Consensus 188 ~~~L~i~GlmTH~a~~~~--~~~~-~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~-~~~~~~VR~G~alyG~~ 263 (269)
+|+|++.|||||+++.++ +... |+++|.++++.+++. |+++ ..+|+|||+++..++ ..+.||||||++|||++
T Consensus 141 ~~~l~l~Gl~th~~~~d~~~~~~~~q~~~~~~~~~~l~~~-~~~~--~~~s~g~S~~~~~~~~~~~~~~vR~G~~lyG~~ 217 (218)
T PF01168_consen 141 LPNLRLEGLMTHFAHADDPDYTNQEQFERFRELAEALEKA-GIPP--PIVSMGNSAAFLLAPAHEGITMVRPGIALYGYR 217 (218)
T ss_dssp TTTEEEEEEEEBGSSTTSSCHHHHHHHHHHHHHHHHHHHT-TTTC--SEEEEEBHHHHHHHGGTTTTSEEEESGGGGT-H
T ss_pred CCCceEeeEeccccccCCHHHHHHHHHHHHHHHHHHHHhc-cCCC--ceecCCCCcchhhcccccCCcEEEechhhhCCC
Confidence 999999999999998664 3444 999999999999874 7655 688999999999887 66799999999999998
Q ss_pred C
Q 024293 264 E 264 (269)
Q Consensus 264 p 264 (269)
|
T Consensus 218 P 218 (218)
T PF01168_consen 218 P 218 (218)
T ss_dssp S
T ss_pred C
Confidence 7
No 6
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=100.00 E-value=3.9e-41 Score=295.55 Aligned_cols=216 Identities=49% Similarity=0.713 Sum_probs=186.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHHHHHHHhCCCeeeeccHHHHHHHHHcCCC-Cceeeee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFI 110 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i~~l~~~G~~~fgva~i~EA~~lr~~i~~-~I~~~~l 110 (269)
+++++++|++.+++.+ +|++++++++||||+||+..+..++++|+++|||++++||+.+|+.+.. .+.|+++
T Consensus 4 ~~~~l~~Ni~~~~~~~-------~~~~~~~~l~avvK~hg~~~va~~~~~G~~~f~va~l~Ea~~lr~~~~~~~~~~~ll 76 (222)
T cd00635 4 NLEEVRERIAAAAERA-------GRDPDEVTLVAVSKTVPAEAIREAIEAGQRDFGENRVQEALDKAEELPDPDIEWHFI 76 (222)
T ss_pred HHHHHHHHHHHHHHHc-------CCCcCCeEEEEEECCCCHHHHHHHHHcCCcccCCCcHHHHHHHHHHccCCCceEEEE
Confidence 5667777777777664 4445678999999999998886667899999999999999999988544 4567888
Q ss_pred cCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCC
Q 024293 111 GNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPN 190 (269)
Q Consensus 111 G~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~ 190 (269)
|++++++++.++ +.++++++|+|.++++.|++.+.+.++ +++|||+||||..|+|+||.++++.++++.+. .+|+
T Consensus 77 g~~~~~~~~~~~---~~~~~~~~v~s~~~l~~l~~~a~~~~~-~~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~-~~~~ 151 (222)
T cd00635 77 GHLQTNKVKYAV---RLFDLIHSVDSLKLAEELNKRAEKEGR-VLDVLVQVNIGGEESKSGVAPEELEELLEEIA-ALPN 151 (222)
T ss_pred CccccccHHHHH---hhCCEEEEcCCHHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCCCCCCHHHHHHHHHHHH-cCCC
Confidence 998999999998 346899999999999999999988888 99999999999555999999999999999998 9999
Q ss_pred eEEEEeEeeCCCCCC--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhhC
Q 024293 191 LEFCGLMTIGMPDYT--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFG 261 (269)
Q Consensus 191 L~i~GlmTH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~alyG 261 (269)
|++.|+|||+++.++ .....++.+.++.+.+++..|+.+ .++|+|||++|+.+...++|++|||+++||
T Consensus 152 l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~is~G~t~~~~~~~~~~~~~~r~G~~if~ 222 (222)
T cd00635 152 LRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVNL--KELSMGMSGDFEIAIEEGATLVRIGTAIFG 222 (222)
T ss_pred CcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCCC--CEEECcccHhHHHHHHcCCCEEEeChhhcC
Confidence 999999999997553 445678888888889987645765 789999999999888889999999999998
No 7
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=100.00 E-value=3.3e-41 Score=285.20 Aligned_cols=238 Identities=58% Similarity=0.894 Sum_probs=202.1
Q ss_pred hcCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHHHHHHHhCCCeeeeccHHHHHHHHHcCCCCc
Q 024293 26 MAASAATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDL 105 (269)
Q Consensus 26 ~~~~~~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i~~l~~~G~~~fgva~i~EA~~lr~~i~~~I 105 (269)
|++.+.+-+.|++-+.++++ ++...+|..+.++|+||+|++++..+..++++|.+.||++++||.+++...+.++|
T Consensus 1 Ms~~~~~~~~L~~v~~rv~q----a~~~~~r~~~~~rlvaVSKtKPa~~i~~~Y~~GqR~FGENYVQEl~eKap~lp~DI 76 (244)
T KOG3157|consen 1 MSAEIVYASALRAVIERVQQ----AVNQRPRDENAVRLVAVSKTKPASLIIEAYDAGQRHFGENYVQELIEKAPLLPDDI 76 (244)
T ss_pred CchHHHHHHHHHHHHHHHHH----HHHhccccccceEEEEeecCCcHHHHHHHHHcCcChhhHHHHHHHHHhcccCcccc
Confidence 44443333455555555544 44555666778999999999999999999999999999999999999886688899
Q ss_pred eeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCC-CceeEEEEEeCCCCCCccCCChhhHHHHHHHH
Q 024293 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHV 184 (269)
Q Consensus 106 ~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~-~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i 184 (269)
.|||||.+|+++++.++. .+..-++.+|||.+.|..|++.-.+.|. .|++|+++|||.+|.++.|+.|.++.++++++
T Consensus 77 ~WHFIG~lQsnK~kkl~s-vpnL~~vetVDseK~A~~ld~a~~k~g~~~PL~V~VQvNTSGEd~K~Giepse~~~l~~~i 155 (244)
T KOG3157|consen 77 KWHFIGHLQSNKCKKLLS-VPNLYSVETVDSEKKARKLDSAWSKLGPDNPLKVLVQVNTSGEDSKSGIEPSEAPELAEHI 155 (244)
T ss_pred eeeeechhhhcccchhcc-CCceEEEEecchHHHHHHHHHHHHhcCCCCCeEEEEEeecCCccccCCCChhhhHHHHHHH
Confidence 999999999999999873 4556688999999999999998887664 39999999999999999999999999999999
Q ss_pred HhcCCCeEEEEeEeeCCCCCC---CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhhC
Q 024293 185 SQNCPNLEFCGLMTIGMPDYT---STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFG 261 (269)
Q Consensus 185 ~~~~~~L~i~GlmTH~a~~~~---~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~alyG 261 (269)
...|+||++.||||+++.+.+ ....-|+.|..+.+.+.+++|+++.-..+|||||.||..+++.|+|.||+|+.|||
T Consensus 156 ~~~c~nL~f~GlMTIGs~~~s~ss~eNpDF~~L~~~r~~ic~~lg~~~dq~eLSMGMS~DF~~AIe~Gst~VRvGStIFG 235 (244)
T KOG3157|consen 156 KSECKNLKFSGLMTIGSFDNSHSSGENPDFQVLVKLRESICKKLGIPADQVELSMGMSADFLLAIEQGSTNVRVGSTIFG 235 (244)
T ss_pred HHhCCcceeeeeEEeccccccccCCCCccHHHHHHHHHHHHHHhCCChHHhhhhcccchhHHHHHHhCCceEEecccccc
Confidence 735999999999999986443 22235888999999998888997655678999999999999999999999999999
Q ss_pred CCCCCCC
Q 024293 262 AREYPKK 268 (269)
Q Consensus 262 ~~p~~~~ 268 (269)
.+||.+|
T Consensus 236 ~R~y~kk 242 (244)
T KOG3157|consen 236 AREYKKK 242 (244)
T ss_pred CCCCCCC
Confidence 9999876
No 8
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=100.00 E-value=1.1e-39 Score=304.73 Aligned_cols=213 Identities=18% Similarity=0.245 Sum_probs=180.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCC-CCcEEEEEecc-CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCCce
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPP-DRIRIVAVSKT-KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDDLE 106 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~-~~~~l~aVvKa-hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I~ 106 (269)
.|+++|++|++.+++.+ + ++++++||+|+ ||+..+ +.+.++|+++|||++++||+.+|+. +..++
T Consensus 6 Idl~al~~Ni~~i~~~~----------~~~~~~l~~vvKa~hg~~~va~~l~~~G~~~f~va~i~EA~~lr~~G~~~~i- 74 (353)
T cd06815 6 INLSKIRHNAKVLVELC----------KSRGIEVTGVTKVVCGDPEIAEALLEGGITHLADSRIENLKKLKDLGISGPK- 74 (353)
T ss_pred EeHHHHHHHHHHHHHHH----------hhcCCEEEEEEcccCCCHHHHHHHHHcCCCEEEeccHHHHHHHHhcCCCCCE-
Confidence 48999999999999988 4 57899999999 598776 7778999999999999999999987 44455
Q ss_pred eeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHh
Q 024293 107 WHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQ 186 (269)
Q Consensus 107 ~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~ 186 (269)
+++|+.++++++.++ +++++.+++|.++++.|++++.+.++ +++|||||||| |+|+||.|+++.++++.+.
T Consensus 75 -lllg~~~~~~~~~~~----~~~~~~~i~s~~~~~~l~~~a~~~~~-~~~vhlkvDtG--m~R~G~~~~e~~~~~~~i~- 145 (353)
T cd06815 75 -MLLRIPMLSEVEDVV----KYADISLNSELETIKALSEEAKKQGK-IHKIILMVDLG--DLREGVLPEDLLDFVEEIL- 145 (353)
T ss_pred -EEECCCCHHHHHHHH----hhcceeccChHHHHHHHHHHHHHcCC-ccceEEEEecC--CCccccCHHHHHHHHHHHh-
Confidence 788988999999998 36777889999999999999988888 89999999999 9999999988999999998
Q ss_pred cCCCeEEEEeEeeCCCCCC--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHH----cCCCeeeeChhh-
Q 024293 187 NCPNLEFCGLMTIGMPDYT--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIE----MGSTNVRIGSTI- 259 (269)
Q Consensus 187 ~~~~L~i~GlmTH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~----~~~~~VR~G~al- 259 (269)
.+|+|+++||||||++.++ .+..++++|.++.+.+.+..|+.+ .++|+|||+++..+.+ .++||||||++|
T Consensus 146 ~~~~l~~~Gi~tH~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~~~~~~S~~~~~~~~~~~~~~~~~vRpG~~l~ 223 (353)
T cd06815 146 KLPGIELVGIGTNLGCYGGVLPTEENMGKLVELKEEIEKEFGIKL--PIISGGNSASLPLLLKGELPGGINQLRIGEAIL 223 (353)
T ss_pred CCCCcEEEecccCccccCCCCCCHHHHHHHHHHHHHHHHhhCCCC--CEEeccchHHHHHHHhcCCcCCCceeEeehhhh
Confidence 9999999999999997543 444567777777666665226554 5789999999886543 378999999998
Q ss_pred hCCCCC
Q 024293 260 FGAREY 265 (269)
Q Consensus 260 yG~~p~ 265 (269)
||..|+
T Consensus 224 yG~~p~ 229 (353)
T cd06815 224 LGRETT 229 (353)
T ss_pred cccccc
Confidence 598875
No 9
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.1e-39 Score=296.77 Aligned_cols=207 Identities=18% Similarity=0.280 Sum_probs=169.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCC-
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPD- 103 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~- 103 (269)
.|+++|+||++.+++.. ++ .+++||||+ ||++.+ +.++++||+.|||++++||++||+. ++.
T Consensus 9 Idl~Al~~N~~~i~~~~----------~~-~~~~AVVKAnAYGhG~~~va~~l~~~g~~~f~VA~l~EAi~LR~~gi~~~ 77 (360)
T COG0787 9 IDLGALRHNLRALRELA----------GP-AKLMAVVKANAYGHGAVRVAKALLDAGADGFGVASLEEAIELREAGITGA 77 (360)
T ss_pred EeHHHHHHHHHHHHHhC----------CC-cEEEEEEeccccCCCHHHHHHHHHHcCCCEEEECcHHHHHHHHHcCCCCC
Confidence 39999999999999987 54 799999999 999887 7889999999999999999999999 663
Q ss_pred Cceeeee-cCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHH
Q 024293 104 DLEWHFI-GNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVK 182 (269)
Q Consensus 104 ~I~~~~l-G~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~ 182 (269)
|| +++ |..+++....++ .+++.++|.|.++++.|.+.+... + +++|||||||| |||+||.|++...++.
T Consensus 78 ~I--lvL~g~~~~~~~~~~~----~~~l~~~v~s~~ql~~l~~~~~~~-~-~l~vhLkiDTG--M~RlG~~~~e~~~~~~ 147 (360)
T COG0787 78 PI--LVLEGFFPAEELELAA----AYNLTPVVNSLEQLEALKNAALKN-K-PLKVHLKIDTG--MNRLGLRPEEAVALAI 147 (360)
T ss_pred CE--EEEcCcCChhhHHHHH----HcCCeEEECCHHHHHHHHHhhhhc-C-ceEEEEEECCC--CCcCCCChHHHHHHHH
Confidence 87 566 466666665555 589999999999999999988876 6 89999999999 9999999999888888
Q ss_pred HHHhcCCCeEEEEeEeeCCCCCCC----cHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChh
Q 024293 183 HVSQNCPNLEFCGLMTIGMPDYTS----TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGST 258 (269)
Q Consensus 183 ~i~~~~~~L~i~GlmTH~a~~~~~----~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~a 258 (269)
.+. .++++.++|+||||+++|++ +..|+++|. +.. .+++++..|+ +||......+..++||||||++
T Consensus 148 ~~~-~~~~~~~~gi~SHfa~ADe~~~~~~~~Q~~~F~-----~~~-~~~~~~~~h~--aNSa~~~~~~~~~~d~vRpGi~ 218 (360)
T COG0787 148 DLI-ALKNLDLEGIFSHFACADEPEDPYTLKQLERFN-----LAK-QGLPGELSHL--ANSAGLLLGPDYHFDMVRPGIA 218 (360)
T ss_pred HHh-hccCCceEEEEcccCCCCCCCChHHHHHHHHHH-----HHh-ccCCCceEEE--eccHHHhcCcccccceeeccee
Confidence 887 88888899999999997753 445666665 223 3677644555 3333322222579999999999
Q ss_pred hhCCCCCCC
Q 024293 259 IFGAREYPK 267 (269)
Q Consensus 259 lyG~~p~~~ 267 (269)
+||..|+..
T Consensus 219 lYG~~P~~~ 227 (360)
T COG0787 219 LYGLSPSGG 227 (360)
T ss_pred eecCCcccc
Confidence 999999853
No 10
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=100.00 E-value=1.1e-38 Score=299.61 Aligned_cols=208 Identities=15% Similarity=0.223 Sum_probs=176.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCC
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDD 104 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~ 104 (269)
.|+++|++|++.+++++ +++++++||||+ ||+..+ +.+.++|+++|||++++||+.||+. +..|
T Consensus 6 Idl~al~~N~~~i~~~~----------~~~~~i~~VVKanAYGhG~~~va~~l~~~G~~~faVa~~~EA~~Lr~~Gi~~~ 75 (368)
T cd06825 6 IDLSALEHNVKEIKRLL----------PSTCKLMAVVKANAYGHGDVEVARVLEQIGIDFFAVATIDEGIRLREAGIKGE 75 (368)
T ss_pred EEHHHHHHHHHHHHHhC----------CCCCeEEEEEeccccCCCHHHHHHHHHHcCCCEEEEccHHHHHHHHhcCCCCC
Confidence 38999999999999998 556799999999 999887 6677899999999999999999998 6668
Q ss_pred ceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHH
Q 024293 105 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV 184 (269)
Q Consensus 105 I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i 184 (269)
| +++|+..++++..++ .++++++|+|.+++++|++.+ + +++|||||||| |+|+||.|+++ +++..+
T Consensus 76 I--lvl~~~~~~~~~~~~----~~~l~~~i~~~~~l~~l~~~~----~-~~~vhlkvDtG--m~R~G~~~~~~-~~~~~~ 141 (368)
T cd06825 76 I--LILGYTPPVRAKELK----KYSLTQTLISEAYAEELSKYA----V-NIKVHLKVDTG--MHRLGESPEDI-DSILAI 141 (368)
T ss_pred E--EEEcCCCHHHHHHHH----HcCCEEEECCHHHHHHHHhcC----C-CceEEEEeeCC--CCCCCCCHHHH-HHHHHH
Confidence 7 566877778888888 489999999999999998866 4 78999999999 99999999654 667778
Q ss_pred HhcCCCeEEEEeEeeCCCCCC-------CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeCh
Q 024293 185 SQNCPNLEFCGLMTIGMPDYT-------STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGS 257 (269)
Q Consensus 185 ~~~~~~L~i~GlmTH~a~~~~-------~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~ 257 (269)
. .+|+|+++||||||+++++ ++..|+++|.++.+.+++. |+++ ..+|+|+|+.....+..++|+||||+
T Consensus 142 ~-~~~~l~~~Gi~tH~a~ad~~~~~~~~~~~~Q~~~f~~~~~~l~~~-g~~~--~~~h~~nSa~~l~~~~~~~d~vR~G~ 217 (368)
T cd06825 142 Y-RLKNLKVSGIFSHLCVSDSLDEDDIAFTKHQIACFDQVLADLKAR-GIEV--GKIHIQSSYGILNYPDLKYDYVRPGI 217 (368)
T ss_pred H-hCCCCcEEEEECCCCCCCCCCCcCchHHHHHHHHHHHHHHHHHhc-CCCC--CcEEeeCCHHHhCCccccCCeEccCe
Confidence 7 8999999999999997542 3567899999999988773 8765 45777888665544456899999999
Q ss_pred hhhCCCCCC
Q 024293 258 TIFGAREYP 266 (269)
Q Consensus 258 alyG~~p~~ 266 (269)
++||..|.+
T Consensus 218 ~lYG~~p~~ 226 (368)
T cd06825 218 LLYGVLSDP 226 (368)
T ss_pred EEECCCCCC
Confidence 999998854
No 11
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=1.8e-37 Score=290.95 Aligned_cols=215 Identities=15% Similarity=0.199 Sum_probs=180.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCC
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDD 104 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~ 104 (269)
.|+++|++|++.+++.+ +++.+++||+|+ ||+..+ +.+.++|+++|+|++++||..+|++ +..+
T Consensus 6 Idl~al~~N~~~i~~~~----------~~~~~i~~vvKAnAYGhG~~~va~~l~~~g~~~f~Vas~~Ea~~lr~~Gi~~~ 75 (365)
T cd06826 6 ISTGAFENNIKLLKKLL----------GGNTKLCAVMKADAYGHGIALVMPSIIAQNIPCVGITSNEEARVVREAGFTGK 75 (365)
T ss_pred EEHHHHHHHHHHHHHhC----------CCCCEEEEEEEeccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhcCCCCC
Confidence 48999999999999988 556799999999 999887 6778999999999999999999998 6667
Q ss_pred ceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeC-CCCCCccCCChhh--HHHHH
Q 024293 105 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNT-SGEESKSGVEPSG--CLELV 181 (269)
Q Consensus 105 I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDt-G~em~R~G~~~ee--~~~~~ 181 (269)
| +++|+..+.+++.++ .+++.++|+|+++++.|++.+.+.++ +++|||+||| | |+|+||.|++ +.+++
T Consensus 76 i--lvl~~~~~~e~~~~i----~~~i~~~v~s~~~l~~l~~~a~~~~~-~~~v~LkvDt~G--m~R~Gi~~~~~~~~~~~ 146 (365)
T cd06826 76 I--LRVRTATPSEIEDAL----AYNIEELIGSLDQAEQIDSLAKRHGK-TLPVHLALNSGG--MSRNGLELSTAQGKEDA 146 (365)
T ss_pred E--EEEeCCCHHHHHHHH----HcCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEECCCC--CCCCCCCcchhhHHHHH
Confidence 6 456777888999998 47899999999999999999988888 9999999999 8 9999999843 56777
Q ss_pred HHHHhcCCCeEEEEeEeeCCCCCC-CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhh
Q 024293 182 KHVSQNCPNLEFCGLMTIGMPDYT-STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 260 (269)
Q Consensus 182 ~~i~~~~~~L~i~GlmTH~a~~~~-~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~aly 260 (269)
..+. .+|+|++.||||||+++++ .+..|+++|.+.++.+.+..|+.++...+|+++|..+...++.++|+||||+++|
T Consensus 147 ~~~~-~~~~l~l~Gi~tH~a~ad~~~~~~q~~~f~~~~~~~~~~~g~~~~~~~~h~~nSa~~l~~~~~~~d~vR~G~~ly 225 (365)
T cd06826 147 VAIA-TLPNLKIVGIMTHFPVEDEDDVRAKLARFNEDTAWLISNAKLKREKITLHAANSFATLNVPEAHLDMVRPGGILY 225 (365)
T ss_pred HHHH-HCCCCcEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhcCCCCCcCeEEeeCCHHHhcCccccCCcCccCeeee
Confidence 7888 8999999999999998653 4567899999888776332466543345666666654333456899999999999
Q ss_pred CCCCC
Q 024293 261 GAREY 265 (269)
Q Consensus 261 G~~p~ 265 (269)
|+.|+
T Consensus 226 G~~p~ 230 (365)
T cd06826 226 GDTPP 230 (365)
T ss_pred CCCCC
Confidence 99985
No 12
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=100.00 E-value=2.4e-37 Score=290.04 Aligned_cols=213 Identities=15% Similarity=0.196 Sum_probs=186.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCC
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDD 104 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~ 104 (269)
.|+++|++|++.+++.+ +++.++++|+|+ ||...+ +.+.++|+++|+|++++||..+|+. ++.+
T Consensus 7 Idl~~l~~N~~~i~~~~----------~~~~~i~~vvKAnaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~lr~~G~~~~ 76 (367)
T TIGR00492 7 IDLAALKHNLSAIRNHI----------GPKSKIMAVVKANAYGHGLIEVAKTLLQAGADYFGVANLEEAITLRKAGITAP 76 (367)
T ss_pred EEHHHHHHHHHHHHHhc----------CCCCEEEEEEEcCCccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCC
Confidence 38999999999999988 556789999999 898876 6778999999999999999999988 4456
Q ss_pred ceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHH
Q 024293 105 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV 184 (269)
Q Consensus 105 I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i 184 (269)
+ +++|+++++++..++ .++++++|+|+++++.|++.+.+.++ +++|||+|||| |+|+||.++++.++++.+
T Consensus 77 i--lvl~~~~~~~~~~~~----~~~l~~~v~s~~~l~~l~~~a~~~~~-~~~V~l~VdtG--m~R~Gi~~~e~~~~~~~i 147 (367)
T TIGR00492 77 I--LLLGGFFAEDLKILA----AWDLTTTVHSVEQLQALEEALLKEPK-RLKVHLKIDTG--MNRLGVKPDEAALFVQKL 147 (367)
T ss_pred E--EEEeCCCHHHHHHHH----HcCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEeeCC--CCCCCCChHHHHHHHHHH
Confidence 5 677888888888888 47899999999999999999988888 89999999999 999999999899999989
Q ss_pred HhcCCCeE-EEEeEeeCCCCCC----CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhh
Q 024293 185 SQNCPNLE-FCGLMTIGMPDYT----STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTI 259 (269)
Q Consensus 185 ~~~~~~L~-i~GlmTH~a~~~~----~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~al 259 (269)
. .+|+|+ +.||||||++.++ +...|+++|.++.+.+++. |+++ ..+|+|||+++...+..++||||||++|
T Consensus 148 ~-~~~~l~~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~-g~~~--~~~~~~nS~~~~~~~~~~~d~vR~G~~l 223 (367)
T TIGR00492 148 R-QLKKFLELEGIFSHFATADEPKTGTTQKQIERFNSFLEGLKQQ-NIEP--PFRHIANSAAILNWPESHFDMVRPGIIL 223 (367)
T ss_pred H-hCCCCCCceEEEcCCCCCCCCCChHHHHHHHHHHHHHHHHhhc-CCCC--CcEEccCCHHHhCCccccCCeEccCeEE
Confidence 8 899999 9999999997542 5567999999999988874 7765 5788999998876667789999999999
Q ss_pred hCCCCCC
Q 024293 260 FGAREYP 266 (269)
Q Consensus 260 yG~~p~~ 266 (269)
||.+|+.
T Consensus 224 yG~~~~~ 230 (367)
T TIGR00492 224 YGLYPSA 230 (367)
T ss_pred ECCCcCc
Confidence 9998863
No 13
>PRK03646 dadX alanine racemase; Reviewed
Probab=100.00 E-value=2.3e-37 Score=289.27 Aligned_cols=202 Identities=15% Similarity=0.169 Sum_probs=168.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHHHHHHHhCCCeeeeccHHHHHHHHHc-CCCCc
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQVYEAGHRCFGENYVQEIVEKAAQ-LPDDL 105 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I 105 (269)
.|+++|++|++.+++.+ + +++++||||+ ||+..+..++. ++++|||++++||+.||+. +..||
T Consensus 8 Idl~al~~N~~~i~~~~----------~-~~~i~aVVKanAYGhG~~~va~~l~-~~~~faVa~l~Ea~~LR~~Gi~~~I 75 (355)
T PRK03646 8 LDLQALKQNLSIVREAA----------P-GARVWSVVKANAYGHGIERIWSALG-ATDGFAVLNLEEAITLRERGWKGPI 75 (355)
T ss_pred EEHHHHHHHHHHHHHhC----------C-CCeEEEEEeeccccCCHHHHHHHHh-cCCEEEEeeHHHHHHHHhcCCCCCE
Confidence 49999999999999987 5 4789999999 99988844443 3999999999999999998 66687
Q ss_pred eeeee-cCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHH
Q 024293 106 EWHFI-GNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV 184 (269)
Q Consensus 106 ~~~~l-G~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i 184 (269)
+++ |...++++..++ +++++++|+|.+++++|++.+ .++ +++|||||||| |+|+||.|+++.++++.+
T Consensus 76 --lvl~~~~~~~~~~~~~----~~~l~~~i~s~~~l~~l~~~~--~~~-~~~vhLkvDTG--M~R~G~~~~e~~~~~~~i 144 (355)
T PRK03646 76 --LMLEGFFHAQDLELYD----QHRLTTCVHSNWQLKALQNAR--LKA-PLDIYLKVNSG--MNRLGFQPERVQTVWQQL 144 (355)
T ss_pred --EEEeCCCCHHHHHHHH----HCCCEEEECCHHHHHHHHHhc--cCC-CeEEEEEeeCC--CCCCCCCHHHHHHHHHHH
Confidence 556 666778888887 589999999999999999876 466 89999999999 999999999999999999
Q ss_pred HhcCCCeEEEEeEeeCCCCCC--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhhCC
Q 024293 185 SQNCPNLEFCGLMTIGMPDYT--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGA 262 (269)
Q Consensus 185 ~~~~~~L~i~GlmTH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~alyG~ 262 (269)
. .+|+|+++|+||||+++|+ ++..|+++|.++.+ ++++ ..|+++|..+...++.++|+||||++|||.
T Consensus 145 ~-~~~~l~~~Gi~sH~a~ad~~~~~~~Q~~~F~~~~~------~~~~---~~h~~nSa~~~~~~~~~~d~vR~Gi~lYG~ 214 (355)
T PRK03646 145 R-AMGNVGEMTLMSHFARADHPDGISEAMARIEQAAE------GLEC---ERSLSNSAATLWHPQAHFDWVRPGIILYGA 214 (355)
T ss_pred H-hCCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHh------ccCC---CeeeeCCHHHHCCccccCCeeccceeeeCC
Confidence 8 9999999999999998664 45667777776542 3432 245677766555456689999999999999
Q ss_pred CCC
Q 024293 263 REY 265 (269)
Q Consensus 263 ~p~ 265 (269)
.|+
T Consensus 215 ~p~ 217 (355)
T PRK03646 215 SPS 217 (355)
T ss_pred CCC
Confidence 885
No 14
>PRK00053 alr alanine racemase; Reviewed
Probab=100.00 E-value=1.2e-35 Score=278.26 Aligned_cols=209 Identities=17% Similarity=0.286 Sum_probs=178.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCC
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDD 104 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~ 104 (269)
.|+++|++|++.+++.+ +++++++||+|+ ||...+ +.+.++|++.|+|++++||..+|+. +..+
T Consensus 8 Idl~~l~~N~~~i~~~~----------~~~~~i~~vvKanaYghg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~~G~~~~ 77 (363)
T PRK00053 8 IDLDALRHNLRQIRKHA----------PPKSKLMAVVKANAYGHGAVEVAKTLLEAGADGFGVATLEEALELREAGITAP 77 (363)
T ss_pred EeHHHHHHHHHHHHHhC----------CCCCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCC
Confidence 49999999999999988 556899999998 999887 5566899999999999999999988 5557
Q ss_pred ceeeeecC-CChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHH
Q 024293 105 LEWHFIGN-LQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKH 183 (269)
Q Consensus 105 I~~~~lG~-~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~ 183 (269)
| +++|+ ..++++..++ .++++++|+|++++++|++. +.++ +++|||+|||| |+|+||.|+++.++++.
T Consensus 78 i--l~l~~~~~~~e~~~~~----~~~i~~~v~s~~~l~~l~~~--~~~~-~~~V~l~vdtG--~~R~Gi~~~e~~~~~~~ 146 (363)
T PRK00053 78 I--LILGGFFPAEDLPLII----AYNLTTAVHSLEQLEALEKA--ELGK-PLKVHLKIDTG--MHRLGVRPEEAEAALER 146 (363)
T ss_pred E--EEEeCCCCHHHHHHHH----HcCCEEEECCHHHHHHHHHh--ccCC-CeEEEEEecCC--CCcCCCCHHHHHHHHHH
Confidence 6 56665 4677888888 47889999999999999985 5677 89999999999 99999999999999999
Q ss_pred HHhcCCCeEEEEeEeeCCCCCC----CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhh
Q 024293 184 VSQNCPNLEFCGLMTIGMPDYT----STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTI 259 (269)
Q Consensus 184 i~~~~~~L~i~GlmTH~a~~~~----~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~al 259 (269)
+. .+|+|++.||||||+++++ ++..|+++|.++.+.+++ .|+ ..+|+|+|+.+...+..++|+||||++|
T Consensus 147 i~-~~~~l~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~-~g~----~~~h~~nS~~~~~~~~~~~d~vRpG~~l 220 (363)
T PRK00053 147 LL-ACPNVRLEGIFSHFATADEPDNSYTEQQLNRFEAALAGLPG-KGK----PLRHLANSAAILRWPDLHFDWVRPGIAL 220 (363)
T ss_pred HH-hCCCCceEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhh-cCC----ceEeccCCHHHhCCCcccCceEccCeee
Confidence 98 9999999999999997542 356789999999888876 366 2567788877665556689999999999
Q ss_pred hCCCCCC
Q 024293 260 FGAREYP 266 (269)
Q Consensus 260 yG~~p~~ 266 (269)
||+.|+.
T Consensus 221 yG~~p~~ 227 (363)
T PRK00053 221 YGLSPSG 227 (363)
T ss_pred eCCCCCc
Confidence 9999863
No 15
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=1.2e-35 Score=303.91 Aligned_cols=210 Identities=13% Similarity=0.171 Sum_probs=180.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCCc
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDDL 105 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I 105 (269)
|+++|++|++.+++.+ ++.++++||||+ ||++.+ +.+.++|+++|||++++||+.+|++ ++.||
T Consensus 465 dl~al~~N~~~i~~~~----------~~~~k~~aVvKa~aYGhG~~~va~~l~~~G~~~f~Va~l~Ea~~lr~~g~~~~I 534 (822)
T PRK11930 465 NLNAIVHNLNYYRSKL----------KPETKIMCMVKAFAYGSGSYEIAKLLQEHRVDYLAVAYADEGVSLRKAGITLPI 534 (822)
T ss_pred hHHHHHHHHHHHHhhC----------CCCCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhcCCCCCE
Confidence 9999999999999987 556899999999 999887 6677899999999999999999998 66687
Q ss_pred eeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcC-CCceeEEEEEeCCCCCCccCCChhhHHHHHHHH
Q 024293 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMG-RKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV 184 (269)
Q Consensus 106 ~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~-~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i 184 (269)
+++|+. ++++..++ .++++++|+|.++++.|++.+.+.+ + +++|||+|||| |+|+||.|+++.++++.+
T Consensus 535 --lvl~~~-~~~~~~~~----~~~l~~~i~s~~~l~~l~~~~~~~~~~-~~~v~l~vDtG--m~R~G~~~~~~~~~~~~i 604 (822)
T PRK11930 535 --MVMNPE-PTSFDTII----DYKLEPEIYSFRLLDAFIKAAQKKGIT-GYPIHIKIDTG--MHRLGFEPEDIPELARRL 604 (822)
T ss_pred --EEEeCC-HHHHHHHH----HcCCEEEECCHHHHHHHHHHHHHcCCC-ceEEEEEeeCC--CCCCCCChHHHHHHHHHH
Confidence 567876 67888888 4899999999999999999998877 7 89999999999 999999999999999999
Q ss_pred HhcCCCeEEEEeEeeCCCCCC-----CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhh
Q 024293 185 SQNCPNLEFCGLMTIGMPDYT-----STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTI 259 (269)
Q Consensus 185 ~~~~~~L~i~GlmTH~a~~~~-----~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~al 259 (269)
. .+|+|++.||||||+++++ ++..|+++|.++.+.+++..+.. ..+|+++|......+..++||||||++|
T Consensus 605 ~-~~~~l~~~Gi~tH~~~ad~~~~~~~~~~q~~~f~~~~~~l~~~~~~~---~~~h~~nS~~~~~~~~~~~d~vR~G~~l 680 (822)
T PRK11930 605 K-KQPALKVRSVFSHLAGSDDPDHDDFTRQQIELFDEGSEELQEALGYK---PIRHILNSAGIERFPDYQYDMVRLGIGL 680 (822)
T ss_pred H-hCCCCcEEEEECCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccCCC---CcEEccCCHHHhCCccccCCeEeeCcee
Confidence 8 8999999999999997553 25679999999998887642333 2457777766554456688999999999
Q ss_pred hCCCCC
Q 024293 260 FGAREY 265 (269)
Q Consensus 260 yG~~p~ 265 (269)
||..|.
T Consensus 681 yG~~p~ 686 (822)
T PRK11930 681 YGVSAS 686 (822)
T ss_pred ECCCCC
Confidence 999886
No 16
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=100.00 E-value=1e-34 Score=271.96 Aligned_cols=213 Identities=20% Similarity=0.256 Sum_probs=186.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHcC-CCC
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQL-PDD 104 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i-~~~ 104 (269)
.|+++|++|++.+++.+ ++++++++|+|+ ||...+ +.+.++|++.|+|++++||..++++. ..+
T Consensus 6 Id~~~i~~N~~~l~~~~----------~~~~~l~~vvKan~yGhg~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~g~~~~ 75 (367)
T cd00430 6 IDLDALRHNLRVIRRLL----------GPGTKIMAVVKADAYGHGAVEVAKALEEAGADYFAVATLEEALELREAGITAP 75 (367)
T ss_pred EEHHHHHHHHHHHHHhC----------CCCCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCC
Confidence 38999999999999988 557899999999 888777 67789999999999999999999884 435
Q ss_pred ceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHH
Q 024293 105 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV 184 (269)
Q Consensus 105 I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i 184 (269)
+ +++|++++++++.++ .++++++|||+++++.|++.+.+.++ +++|||+|||| |+|+||.++++.++++.+
T Consensus 76 i--~~~~~~~~~~~~~~~----~~~i~~~vds~~~l~~l~~~a~~~~~-~~~v~l~vdtG--~~R~G~~~~e~~~~~~~i 146 (367)
T cd00430 76 I--LVLGGTPPEEAEEAI----EYDLTPTVSSLEQAEALSAAAARLGK-TLKVHLKIDTG--MGRLGFRPEEAEELLEAL 146 (367)
T ss_pred E--EEEeCCCHHHHHHHH----HcCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEEcCC--CCCCCCCHHHHHHHHHHH
Confidence 4 677888889999998 36889999999999999999988887 89999999999 999999999999999999
Q ss_pred HhcCCCeEEEEeEeeCCCCCC----CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhh
Q 024293 185 SQNCPNLEFCGLMTIGMPDYT----STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 260 (269)
Q Consensus 185 ~~~~~~L~i~GlmTH~a~~~~----~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~aly 260 (269)
. .+++|++.|||||+++.++ +...|+++|.++.+.+.+ .|+++ ..+|+|+|..++..++.++|++|||++||
T Consensus 147 ~-~~~~l~~~Gi~~H~~~~~~~~~~~~~~q~~~~~~~~~~l~~-~g~~~--~~v~~g~s~~~~~~~~~~~d~vR~G~~ly 222 (367)
T cd00430 147 K-ALPGLELEGVFTHFATADEPDKAYTRRQLERFLEALAELEE-AGIPP--PLKHLANSAAILRFPEAHFDMVRPGIALY 222 (367)
T ss_pred H-hCCCceEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHh-cCCCC--CcEEccCCHHHhCCccccCCeEeeCeEEE
Confidence 8 9999999999999997432 456789999999988877 47665 67899999887766667899999999999
Q ss_pred CCCCCC
Q 024293 261 GAREYP 266 (269)
Q Consensus 261 G~~p~~ 266 (269)
|..|+.
T Consensus 223 G~~~~~ 228 (367)
T cd00430 223 GLYPSP 228 (367)
T ss_pred CcCCCc
Confidence 998864
No 17
>PRK13340 alanine racemase; Reviewed
Probab=100.00 E-value=2e-34 Score=273.85 Aligned_cols=214 Identities=15% Similarity=0.241 Sum_probs=171.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCC
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDD 104 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~ 104 (269)
.|+++|++|++.+++.+ ++..++++|+|+ ||+..+ +.+.++|+++|+|++++||..+|++ +..+
T Consensus 45 Idl~ai~~N~~~i~~~~----------~~~~~i~~vvKAnaYG~G~~~va~~l~~~G~~~~~Vas~~Ea~~lr~~G~~~~ 114 (406)
T PRK13340 45 ISPGAFRHNIKTLRSLL----------ANKSKVCAVMKADAYGHGIELLMPSIIKANVPCIGIASNEEARRVRELGFTGQ 114 (406)
T ss_pred EcHHHHHHHHHHHHHhC----------CCCCEEEEEEccccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhCCCCCC
Confidence 39999999999999988 545689999999 788777 6778899999999999999999998 5556
Q ss_pred ceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeC-CCCCCccCCChhhHHHH--H
Q 024293 105 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNT-SGEESKSGVEPSGCLEL--V 181 (269)
Q Consensus 105 I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDt-G~em~R~G~~~ee~~~~--~ 181 (269)
+ .+++...+++++.++ .++++++|+|+++++.|++.+.+.++ +++|||+||| | |+|+||.+++...+ +
T Consensus 115 i--lvl~~~~~~el~~~~----~~~l~~~v~s~~~l~~l~~~a~~~~~-~~~V~LkVDt~G--m~R~G~~~~e~~~~~~~ 185 (406)
T PRK13340 115 L--LRVRSASPAEIEQAL----RYDLEELIGDDEQAKLLAAIAKKNGK-PIDIHLALNSGG--MSRNGLDMSTARGKWEA 185 (406)
T ss_pred E--EEECCCCHHHHHHHH----HcCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEECCCC--CCCcCCChhhhhHHHHH
Confidence 5 455666788899888 47889999999999999999988888 9999999999 7 99999998654333 3
Q ss_pred HHHHhcCCCeEEEEeEeeCCCCC-CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhh
Q 024293 182 KHVSQNCPNLEFCGLMTIGMPDY-TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 260 (269)
Q Consensus 182 ~~i~~~~~~L~i~GlmTH~a~~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~aly 260 (269)
..+. .+++|++.||||||++++ +.+..|+++|.++++.+.+..|+.++...+++++|......++.++|+||||++||
T Consensus 186 ~~l~-~~~~l~l~Gi~tH~a~ad~~~~~~q~~~f~~~~~~l~~~~g~~~~~~~~h~anSa~~~~~~~~~~d~vR~G~~ly 264 (406)
T PRK13340 186 LRIA-TLPSLGIVGIMTHFPNEDEDEVRWKLAQFKEQTAWLIGEAGLKREKITLHVANSYATLNVPEAHLDMVRPGGILY 264 (406)
T ss_pred HHHH-hCCCccEEEEEEECCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCCcCeEEecCCHHHHcCchhcCCeEeeCeeee
Confidence 3677 889999999999999754 35567899999888877544466432123344444332222456899999999999
Q ss_pred CC-CC
Q 024293 261 GA-RE 264 (269)
Q Consensus 261 G~-~p 264 (269)
|+ .|
T Consensus 265 G~~~p 269 (406)
T PRK13340 265 GDRHP 269 (406)
T ss_pred CCCCC
Confidence 99 65
No 18
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=4.3e-34 Score=267.21 Aligned_cols=201 Identities=17% Similarity=0.248 Sum_probs=165.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHHH-HHHHhCCCeeeeccHHHHHHHHHc-CCCC
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIR-QVYEAGHRCFGENYVQEIVEKAAQ-LPDD 104 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i~-~l~~~G~~~fgva~i~EA~~lr~~-i~~~ 104 (269)
.|+++|++|++.+++.+ ++ ++++||+|+ ||...+. .+.+ +++|+|++++||..+|++ ++.+
T Consensus 6 Idl~~l~~N~~~l~~~~----------~~-~~l~~vvKanaYGhG~~~ia~~l~~--~~~f~Vas~~Ea~~lr~~G~~~~ 72 (354)
T cd06827 6 IDLAALRHNLRLVRELA----------PN-SKILAVVKANAYGHGLVRVAKALAD--ADGFAVACIEEALALREAGITKP 72 (354)
T ss_pred EEHHHHHHHHHHHHhhC----------CC-CeEEEEEeeccccCCHHHHHHHHHc--CCEEEEccHHHHHHHHhCCCCCC
Confidence 48999999999999988 53 789999999 9998874 4444 999999999999999998 5667
Q ss_pred ceeeee-cCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHH
Q 024293 105 LEWHFI-GNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKH 183 (269)
Q Consensus 105 I~~~~l-G~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~ 183 (269)
| +++ |+..++++..++ .++++++|+|.++++.|++.+ .++ +++|||+|||| |+|+||.++++.++++.
T Consensus 73 i--lvl~~~~~~~~~~~~~----~~~l~~~v~s~~~l~~l~~~~--~~~-~~~v~l~vDtG--m~R~Gi~~~e~~~~~~~ 141 (354)
T cd06827 73 I--LLLEGFFSADELPLAA----EYNLWTVVHSEEQLEWLEQAA--LSK-PLNVWLKLDSG--MHRLGFSPEEYAAAYQR 141 (354)
T ss_pred E--EEEECCCCHHHHHHHH----HcCCEEEECCHHHHHHHHHhc--CCC-CeEEEEEeeCC--cCCCCCCHHHHHHHHHH
Confidence 6 455 666778888877 478999999999999999877 466 89999999999 99999999889999999
Q ss_pred HHhcCCCeEEEEeEeeCCCCCC----CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhh
Q 024293 184 VSQNCPNLEFCGLMTIGMPDYT----STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTI 259 (269)
Q Consensus 184 i~~~~~~L~i~GlmTH~a~~~~----~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~al 259 (269)
+. .+++|++.||||||+++++ ++..|+++|.++.+. +++ ..|+++|......+..++||||||+++
T Consensus 142 i~-~~~~l~l~Gi~tH~a~ad~~~~~~~~~Q~~~F~~~~~~------~~~---~~h~~nS~~~~~~~~~~~d~vR~G~~l 211 (354)
T cd06827 142 LK-ASPNVASIVLMTHFACADEPDSPGTAKQLAIFEQATAG------LPG---PRSLANSAAILAWPEAHGDWVRPGIML 211 (354)
T ss_pred HH-hCCCceEEEEEeeccCCCCCCcHHHHHHHHHHHHHHhc------cCC---CeeecCCHHHHCCccccCceEccCcee
Confidence 98 8999999999999998654 345677777765443 221 236666666554456688999999999
Q ss_pred hCCCCC
Q 024293 260 FGAREY 265 (269)
Q Consensus 260 yG~~p~ 265 (269)
||..|.
T Consensus 212 yG~~p~ 217 (354)
T cd06827 212 YGASPF 217 (354)
T ss_pred eCCCCC
Confidence 999885
No 19
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=100.00 E-value=3.3e-34 Score=266.47 Aligned_cols=212 Identities=18% Similarity=0.244 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCceeeeecCC
Q 024293 35 VAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNL 113 (269)
Q Consensus 35 ~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~lG~~ 113 (269)
+|++|++.+++.+. +.+++++||+|+||...+ +.+.++|++.|+|++++||+.+++....+| ++.+++
T Consensus 1 ~l~~Ni~~~~~~~~---------~~~~~l~~vvKah~~~~v~~~l~~~G~~~~~vat~~Ea~~l~~~G~~~I--li~~~~ 69 (345)
T cd07376 1 ALEANISRMAARAR---------ASGVRLRPHVKTHKSPELAQRQLAAGARGVTVATLAEAETFAEAGVKDI--LMAYPL 69 (345)
T ss_pred ChHHHHHHHHHHHH---------HcCCccccccchhcCHHHHHHHHhCCCCcEEEecHHHHHHHHHcCCCeE--EEECCc
Confidence 47899999999873 246789999999999776 777899999999999999999998843676 566777
Q ss_pred C-hhcHHhHhhcCC-CccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHH--HHHhcCC
Q 024293 114 Q-SNKVKPLLAGVP-NLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVK--HVSQNCP 189 (269)
Q Consensus 114 ~-~~~~~~lv~~~~-~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~--~i~~~~~ 189 (269)
. +++++.+++... ..++..+|||.++++.|++.+.+.++ +++|||+|||| |+|+||.|++...+.. .+. ++|
T Consensus 70 ~~~~~~~~~~~l~~~~~~i~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~ID~G--~~R~Gv~~~~~~~l~~~~~i~-~~~ 145 (345)
T cd07376 70 VGPAAIARLAGLLRQEAEFHVLVDSPEALAALAAFAAAHGV-RLRVMLEVDVG--GHRSGVRPEEAAALALADAVQ-ASP 145 (345)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCC-eeEEEEEeCCC--CCcCCCCCcHHHHHHHHHHhc-cCC
Confidence 6 667766653222 26789999999999999999988888 99999999999 9999999855443333 344 689
Q ss_pred CeEEEEeEeeCCCCCC---------CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHH-HcCCCeeeeChhh
Q 024293 190 NLEFCGLMTIGMPDYT---------STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAI-EMGSTNVRIGSTI 259 (269)
Q Consensus 190 ~L~i~GlmTH~a~~~~---------~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~-~~~~~~VR~G~al 259 (269)
+|++.|||||+++.++ +...++++|.++.+.++ .|+++ ..+|+|+|+++..+. ..++|+||||+++
T Consensus 146 ~l~l~Gl~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~g~~~--~~vs~G~S~~~~~~~~~~~~~~vR~G~~l 221 (345)
T cd07376 146 GLRLAGVMAYEGHIYGAGGAREGAQARDQAVAAVRAAAAAAE--RGLAC--PTVSGGGTPTYQLTAGDRAVTELRAGSYV 221 (345)
T ss_pred CeEEeEEEeecchhccCCCHHHHHHHHHHHHHHHHHHHHHHH--cCCCC--CEEEeCCCcChhhcccCCCCEEEcCceEE
Confidence 9999999999996422 23356666666666555 27654 688999999988764 5689999999999
Q ss_pred hCCCCC
Q 024293 260 FGAREY 265 (269)
Q Consensus 260 yG~~p~ 265 (269)
||+.+|
T Consensus 222 yg~~~~ 227 (345)
T cd07376 222 FMDTGF 227 (345)
T ss_pred ecchHH
Confidence 999888
No 20
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=100.00 E-value=3.6e-34 Score=267.79 Aligned_cols=217 Identities=21% Similarity=0.271 Sum_probs=175.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCc--ee
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDL--EW 107 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I--~~ 107 (269)
.|+++|++|++.+++.+ +...+++||+|+|+...+ +.+.++|++.|+|++++||..+++...+++ .|
T Consensus 14 id~~~l~~Ni~~~~~~~----------~~~~~l~~~vKah~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~~ill~~ 83 (361)
T cd06821 14 VYPDRIEENIRRMIRMA----------GDPQRLRPHVKTHKMAEIVRLQLEAGITKFKCATIAEAEMLAEAGAPDVLLAY 83 (361)
T ss_pred EeHHHHHHHHHHHHHHH----------hcCCCccccchhhcCHHHHHHHHhcCCCcEEEecHHHHHHHHHcCCCeEEEeC
Confidence 39999999999999998 434589999999999886 677899999999999999999998743343 33
Q ss_pred eeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChh-hHHHHHHHHHh
Q 024293 108 HFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPS-GCLELVKHVSQ 186 (269)
Q Consensus 108 ~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~e-e~~~~~~~i~~ 186 (269)
++.|+..++.+..+.+ ....+++++|||+++++.|++.+.+.++ +++|||+|||| |+|+||.++ ++.++++.+.
T Consensus 84 ~~~~~~~~~~~~l~~~-~~~~~~~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~Vd~G--~~R~Gv~~~~~~~~l~~~i~- 158 (361)
T cd06821 84 PLVGPNIERFLELAKK-YPGTRFSALVDDLEAAEALSAAAGSAGL-TLSVLLDVNTG--MNRTGIAPGEDAEELYRAIA- 158 (361)
T ss_pred CCCHHHHHHHHHHHhh-CCCCeEEEEECCHHHHHHHHHHHHHcCC-eEEEEEEeCCC--CCcCCCCChHHHHHHHHHHh-
Confidence 3334322222333321 1124588999999999999999998888 99999999999 999999986 7999999998
Q ss_pred cCCCeEEEEeEeeCCC---CC-----CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChh
Q 024293 187 NCPNLEFCGLMTIGMP---DY-----TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGST 258 (269)
Q Consensus 187 ~~~~L~i~GlmTH~a~---~~-----~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~a 258 (269)
++|+|++.|||+|.++ .+ .....+++.|.++.+.+++ .|+.+ ..+|+|+|+++..+...+.|+||||++
T Consensus 159 ~~~~l~l~Gl~~~~gh~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~v~~GgS~~~~~~~~~~~~~vr~G~~ 235 (361)
T cd06821 159 TLPGLVLAGLHAYDGHHRNTDLAEREAAADAAYKPVLALREALEA-AGLPV--PELVAGGTPSFPFHAAYTDVECSPGTF 235 (361)
T ss_pred hCCCceEeeEEeecCcccCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCC--CEEEECCCcchhhhccCCCcEECCceE
Confidence 9999999999987664 22 1345688888888888887 47654 678999999998776668899999999
Q ss_pred hhCCCCC
Q 024293 259 IFGAREY 265 (269)
Q Consensus 259 lyG~~p~ 265 (269)
+||+.|+
T Consensus 236 l~gd~~~ 242 (361)
T cd06821 236 VLWDAGY 242 (361)
T ss_pred EEecHHH
Confidence 9999886
No 21
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=100.00 E-value=4.6e-33 Score=263.03 Aligned_cols=220 Identities=16% Similarity=0.172 Sum_probs=175.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCC--CeeeeccHHHHHHHHHc-CCCCce
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGH--RCFGENYVQEIVEKAAQ-LPDDLE 106 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~--~~fgva~i~EA~~lr~~-i~~~I~ 106 (269)
.|+++|++|++.|++++. +.+++++||+|+||+..+ +.++++|+ ++|+|++++||+.+|+. +..+|.
T Consensus 11 Idl~al~~Ni~~m~~~~~---------~~~~~l~phvKaHg~~~ia~~~~~~Ga~~~~~~Vatl~EA~~lr~~G~~~~I~ 81 (389)
T cd06817 11 IDRAKFKRNCERMLQRAK---------ALGVKFRPHVKTHKTLEGTRLQLGEGRPSRGIVVSTLAEAEFLLPLGEEGRVD 81 (389)
T ss_pred EEHHHHHHHHHHHHHHHH---------HcCCceeeeecCcCCHHHHHHHhhCCCCccCEEEecHHHHHHHHHhccccccc
Confidence 399999999999999883 126789999999999887 66788999 99999999999999988 544542
Q ss_pred eeeec-CCChhcHHhHhhcCCCcc-EEEeeCcHHHHHHHHHH-HHhcCCCceeEEEEEeCCCCCCccCCCh--hhHHHHH
Q 024293 107 WHFIG-NLQSNKVKPLLAGVPNLA-MVESVDNEKIAGRLNRM-VETMGRKPLKVLVQVNTSGEESKSGVEP--SGCLELV 181 (269)
Q Consensus 107 ~~~lG-~~~~~~~~~lv~~~~~~~-l~~~v~s~~~a~~L~~~-a~~~~~~~i~V~lkIDtG~em~R~G~~~--ee~~~~~ 181 (269)
-.++| ++.+++++.++++.+.++ ++++|||.++++.|++. +...++ +++|||+|||| |||+||.| +++.+++
T Consensus 82 dilla~~~~~~~~~~l~~l~~~~~~i~~~Vds~~~l~~l~~~~a~~~g~-~~~V~lkvDtG--m~R~Gv~~~~~~~~~l~ 158 (389)
T cd06817 82 DILYGLPVPPSKLPRLAELSKKLGHLRVMVDNPEQLDFLEQFQPLKSGK-KWSVFIKVDCG--THRAGVPPESEDAKELI 158 (389)
T ss_pred cEEEECCCCHHHHHHHHHHHhhcCceEEEECCHHHHHHHHHHHhhccCC-ceEEEEEEcCC--CCcCCCCCChHHHHHHH
Confidence 23556 567788888884222224 99999999999999998 877787 99999999999 99999986 3588899
Q ss_pred HHHHhc-CCCeEEEEeEeeCCCCCC---------CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHH-----
Q 024293 182 KHVSQN-CPNLEFCGLMTIGMPDYT---------STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAI----- 246 (269)
Q Consensus 182 ~~i~~~-~~~L~i~GlmTH~a~~~~---------~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~----- 246 (269)
+.+. + +|+|++.|+|||+++... .....++.+..+.+.+++.+|+++ ..+|.|+|+++....
T Consensus 159 ~~i~-~~~~~L~l~Gi~tH~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~vs~GgTpt~~~~~~~~~~ 235 (389)
T cd06817 159 QKLE-KASEAVELFGFYSHAGHSYSSRSAEDAKEVLREEIEAVLTAAKKLKSIQGDRK--LTLSVGATPTAHAAEALVLI 235 (389)
T ss_pred HHHH-hhCCCcEEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CEEEeCCCcchhhhcccccc
Confidence 9998 8 999999999999997431 112344555666666664147765 789999999887632
Q ss_pred ----HcCCCeeeeChhhhCCCCC
Q 024293 247 ----EMGSTNVRIGSTIFGAREY 265 (269)
Q Consensus 247 ----~~~~~~VR~G~alyG~~p~ 265 (269)
..+.+++|||+++|.+..|
T Consensus 236 ~~~~~~~~tel~pG~Yvf~D~~~ 258 (389)
T cd06817 236 PAPSLSGLLELHAGNYPFYDLQQ 258 (389)
T ss_pred ccccCCcceEEccCccccccHHH
Confidence 2467999999999998766
No 22
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=100.00 E-value=3.4e-33 Score=260.40 Aligned_cols=216 Identities=20% Similarity=0.287 Sum_probs=182.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCc--ee
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDL--EW 107 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I--~~ 107 (269)
-|+++|++|++.+++.+. +.+++++||+|+||...+ +.+.++|++.|+|++++||..+++....+| .|
T Consensus 8 id~~~l~~Ni~~~~~~~~---------~~~v~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~~i~i~~ 78 (353)
T cd06820 8 IDLDRLERNIARMQAYAD---------AHGLSLRPHIKTHKSPEIARLQLAAGAIGITVATVGEAEVMADAGLSDIFIAY 78 (353)
T ss_pred EeHHHHHHHHHHHHHHHH---------HcCCccccccccccCHHHHHHHHhCCCCCEEEeeHHHHHHHHHCCCCeEEEEC
Confidence 399999999999999883 236889999999999877 777899999999999999999998743443 34
Q ss_pred eeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCCh-hhHHHHHHHHHh
Q 024293 108 HFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP-SGCLELVKHVSQ 186 (269)
Q Consensus 108 ~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~-ee~~~~~~~i~~ 186 (269)
+++|+.+.+++..++ +..+++++|||+++++.|++++.+.++ +++|+|+||+| |+|+|+.+ +++.++++.+.
T Consensus 79 ~~~~~~~~~~l~~l~---~~~~~~~~vds~~~l~~L~~~a~~~~~-~~~V~l~vd~G--~~R~Gv~~~~~~~~l~~~i~- 151 (353)
T cd06820 79 PIVGRQKLERLRALA---ERVTLSVGVDSAEVARGLAEVAEGAGR-PLEVLVEVDSG--MNRCGVQTPEDAVALARAIA- 151 (353)
T ss_pred CcCCHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHhcCC-eeEEEEEECCC--CCcCCCCChHHHHHHHHHHH-
Confidence 445655555666666 457899999999999999999999888 99999999999 99999998 89999999998
Q ss_pred cCCCeEEEEeEeeCCCCCC------CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHH-HcCCCeeeeChhh
Q 024293 187 NCPNLEFCGLMTIGMPDYT------STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAI-EMGSTNVRIGSTI 259 (269)
Q Consensus 187 ~~~~L~i~GlmTH~a~~~~------~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~-~~~~~~VR~G~al 259 (269)
++|+|++.|||||+++.++ ...++++.+.++++.+++ .|+.+ ..+|+|+|++++.+. ..++|++|||+++
T Consensus 152 ~~~~l~l~Gi~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~vs~Ggs~t~~~~~~~~~~~elR~G~~i 228 (353)
T cd06820 152 SAPGLRFRGIFTYPGHSYAPGALEEAAADEAEALLAAAGILEE-AGLEP--PVVSGGSTPTLWRSHEVPGITEIRPGTYI 228 (353)
T ss_pred hCCCcEEEEEEecCCccCChHHHHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEeCcChhhhhhhccCCceEEccccEE
Confidence 9999999999999997542 345677888888888887 47754 788999999988764 4689999999999
Q ss_pred hCCCCC
Q 024293 260 FGAREY 265 (269)
Q Consensus 260 yG~~p~ 265 (269)
||+..|
T Consensus 229 ~~d~~~ 234 (353)
T cd06820 229 FNDASQ 234 (353)
T ss_pred eecHHH
Confidence 998754
No 23
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=100.00 E-value=6e-32 Score=254.77 Aligned_cols=215 Identities=13% Similarity=0.156 Sum_probs=170.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHH-HhCCCeeeeccHHHHHHHHHc-CCCCcee
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVY-EAGHRCFGENYVQEIVEKAAQ-LPDDLEW 107 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~-~~G~~~fgva~i~EA~~lr~~-i~~~I~~ 107 (269)
.|+++|++|++.+++++ +.+++++||+|+|+...+ +..+ ++|++.|+|++++||+.+|++ ...+|
T Consensus 14 IDl~al~~Ni~~m~~~~----------~~g~~lrphvKa~ky~~~~~~~l~~~Ga~g~~vat~~Eae~l~~~~~~~dI-- 81 (379)
T cd06814 14 LDKDRLDHNIDLLREHL----------AGSLAYRIVAKSLPSPPLLRHIMKRAGTRRLMVFHQPFLNAVAKAFPDADI-- 81 (379)
T ss_pred EEHHHHHHHHHHHHHhh----------CCCCcEEEEeccccCHHHHHHHHhhCCCCEEEEecHHHHHHHHhcCCCcCe--
Confidence 49999999999999998 557899999999998655 5555 789999999999999999987 34577
Q ss_pred eeec-CCChhcHHhHhh-cCC-----CccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChh-hHHH
Q 024293 108 HFIG-NLQSNKVKPLLA-GVP-----NLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPS-GCLE 179 (269)
Q Consensus 108 ~~lG-~~~~~~~~~lv~-~~~-----~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~e-e~~~ 179 (269)
+ +| ++.+.++..+++ +.+ .++++++|||.++++.|++.+.+.++ +++|||||||| |||+||.++ ++.+
T Consensus 82 L-l~~p~~~~~~~r~~~~l~~~~~~~~~~l~~~Vds~e~l~~l~~~a~~~g~-~l~V~lkVDtG--m~R~Gv~~~~~~~~ 157 (379)
T cd06814 82 L-LGKPMPVAAAARFYRQLTGSAFRPARQLQWLIDTPERLAQYRALARSLGL-TLRINLELDVG--LHRGGFADPQTLPK 157 (379)
T ss_pred E-EeCCCCcHHHHHHHhhccccccchhcCEEEEECCHHHHHHHHHHHHHcCC-ceEEEEEeCCC--CCCCCCCCHHHHHH
Confidence 3 55 435566644432 111 36799999999999999999988888 99999999999 999999885 6999
Q ss_pred HHHHHHhcCCCeEEEEeEeeCCCC---CCC---c------HHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHH
Q 024293 180 LVKHVSQNCPNLEFCGLMTIGMPD---YTS---T------PENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIE 247 (269)
Q Consensus 180 ~~~~i~~~~~~L~i~GlmTH~a~~---~~~---~------~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~ 247 (269)
+++.+. .+++|++.|||||.++. .+. . ...++.+.++.+.++. .|+.+ ..+|.|+|++|+....
T Consensus 158 l~~~i~-~~~~l~~~Gi~ty~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~--~~vs~GgTpT~~~~~~ 233 (379)
T cd06814 158 ALTAID-APPRLRFSGLMGYEPHVAKLPGLISPAKARAAAMARYQAFVALARAHLG-AHTQK--LTLNTGGSPTYRLYEG 233 (379)
T ss_pred HHHHHH-hCCCceEEEEEEEccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhc-cCCCc--cEEecCCCcceEEEcC
Confidence 999998 99999999999999862 111 1 1223444444444544 37765 7889999999886543
Q ss_pred -cCCCeeeeChhhhCCCCC
Q 024293 248 -MGSTNVRIGSTIFGAREY 265 (269)
Q Consensus 248 -~~~~~VR~G~alyG~~p~ 265 (269)
.+.|++|||+++|.+..|
T Consensus 234 ~~~~tE~~pGsy~f~D~~~ 252 (379)
T cd06814 234 DGPVNEVSAGSALVKPTDF 252 (379)
T ss_pred CCcceEeccccEEEccccc
Confidence 568999999999999877
No 24
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.98 E-value=1.1e-30 Score=246.54 Aligned_cols=212 Identities=19% Similarity=0.162 Sum_probs=172.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccC--ChHHHHHHHHhCCCeeeeccHHHHHHHHHc-CCC-Ccee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTK--PVSVIRQVYEAGHRCFGENYVQEIVEKAAQ-LPD-DLEW 107 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKah--g~~~i~~l~~~G~~~fgva~i~EA~~lr~~-i~~-~I~~ 107 (269)
|+++|++|++.+++.+. +.++++++|+|++ +...++.+.++|++.|+|++++||..+|++ ++. .|
T Consensus 34 Dl~~I~~N~~~l~~~~~---------~~~~~l~~vvKAna~~~~ia~~l~~~G~~g~~vas~~Ea~~lr~aGi~~~~I-- 102 (382)
T cd06811 34 DLDQIEENARLLAETAE---------KYGIELYFMTKQFGRNPFLARALLEAGIPGAVAVDFKEARALHEAGLPLGHV-- 102 (382)
T ss_pred cHHHHHHHHHHHHHHHh---------hCCCEEEEEEccCCCCHHHHHHHHHcCCCeEeEecHHHHHHHHHcCCCHHhE--
Confidence 99999999999999882 1267999999997 434447778999999999999999999988 443 33
Q ss_pred eeecCCChhcHHhHhhcCCCccE-EEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCcc------CCChhhHHHH
Q 024293 108 HFIGNLQSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKS------GVEPSGCLEL 180 (269)
Q Consensus 108 ~~lG~~~~~~~~~lv~~~~~~~l-~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~------G~~~ee~~~~ 180 (269)
..++..++++++.++ .+++ +++|+|++++++|++.|.++|+ +++|||+|||| |+|+ ||.++++.++
T Consensus 103 ~~l~~~~~~el~~~v----~~~~~~i~V~s~~~l~~L~~~A~~~g~-~~~V~LrVdtg--~~ri~~g~~~G~~~~e~~~~ 175 (382)
T cd06811 103 GHLVQIPRHQVPAVL----AMRPEVITVYSLEKAREISDAAVELGR-VQDVLLRVYGD--EDTLYPGQEGGFPLEELPAV 175 (382)
T ss_pred EEccCCCHHHHHHHH----HcCCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEEECC--CCccccCccceecHHHHHHH
Confidence 333445678899988 3454 7999999999999999998898 99999999999 9987 9999999999
Q ss_pred HHHHHhcCCCeEEEEeEeeCCCC--CCC-----cHHHHHHHHHHHHHHHHHcCCCCCcceeecCCc---cCHHHHHHcCC
Q 024293 181 VKHVSQNCPNLEFCGLMTIGMPD--YTS-----TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS---GDFELAIEMGS 250 (269)
Q Consensus 181 ~~~i~~~~~~L~i~GlmTH~a~~--~~~-----~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s---~~~~~~~~~~~ 250 (269)
++.+. .+++|++.|| |||++. ++. ...+++.|.++.+.+++ .|+++ .++|+|++ .+++...+.++
T Consensus 176 ~~~i~-~l~~l~l~Gi-thf~~~~~d~~~~~~~~~~~~~~l~~~~~~l~~-~g~~~--~~is~Gga~ss~~l~~~~~~~~ 250 (382)
T cd06811 176 LAAIK-ALPGIRIAGL-TSFPCFLYDEEQGDIAPTPNLFTLLKAKELLEK-RGIEI--LQLNAPSATSCATLPLLAEYGV 250 (382)
T ss_pred HHHHH-cCCCcEEEeE-cccchhhcccCcccccHHHHHHHHHHHHHHHHH-CCCCC--eEEccCCCcchhhHHHHHhCCC
Confidence 99998 9999999999 777752 221 23478888888888877 47754 67776533 45566667899
Q ss_pred CeeeeChhhhCCCCCC
Q 024293 251 TNVRIGSTIFGAREYP 266 (269)
Q Consensus 251 ~~VR~G~alyG~~p~~ 266 (269)
||+|||++|||+.|+.
T Consensus 251 t~vRpG~~LyG~~p~~ 266 (382)
T cd06811 251 THGEPGHALTGTTPLH 266 (382)
T ss_pred cEEeccEEEecCcchh
Confidence 9999999999999973
No 25
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=99.97 E-value=2.5e-29 Score=234.75 Aligned_cols=216 Identities=20% Similarity=0.259 Sum_probs=172.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCcee--
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEW-- 107 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~-- 107 (269)
.|+++|++|++.+++.+. +.++++++++|+|+...+ +.+.++|++.|+|++++||..++++..++|.+
T Consensus 12 id~~~l~~N~~~l~~~~~---------~~~~~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~~ili~~ 82 (358)
T cd06819 12 LDLDALERNIKRMAAFAK---------AHGVRLRPHAKTHKCPAIARRQIAAGAVGVCCQKLSEAEVMAAAGIRDILITN 82 (358)
T ss_pred EEHHHHHHHHHHHHHHHH---------HcCCcccccchhhcCHHHHHHHHhCCCCcEEEccHHHHHHHHHCCCCeEEEEC
Confidence 399999999999999883 136789999999998776 77788999999999999999998874445511
Q ss_pred eeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCC-hhhHHHHHHHHHh
Q 024293 108 HFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVE-PSGCLELVKHVSQ 186 (269)
Q Consensus 108 ~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~-~ee~~~~~~~i~~ 186 (269)
.+.|+...+++..++ ..+++..+|||+++++.|++.+.+.++ +++|+|+||+| |+|+|+. ++++.++++.+.
T Consensus 83 ~~~~~~~~~~~~~~~---~~~~i~~~vDs~~~l~~l~~~a~~~~~-~~~V~l~vd~G--~~R~Gv~~~~~~~~l~~~i~- 155 (358)
T cd06819 83 EVVGPAKIARLAALA---RRAPLIVCVDHPDNVRALAAAAVEAGV-RLDVLVEIDVG--QGRCGVPPGEAALALARTIA- 155 (358)
T ss_pred CcCCHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHhcCC-ceEEEEEECCC--CCcCCCCChHHHHHHHHHHH-
Confidence 122433233333333 357899999999999999999998888 99999999999 9999998 578999999998
Q ss_pred cCCCeEEEEeEeeCCC------CCC---CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHH-cCCCeeeeC
Q 024293 187 NCPNLEFCGLMTIGMP------DYT---STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIE-MGSTNVRIG 256 (269)
Q Consensus 187 ~~~~L~i~GlmTH~a~------~~~---~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~-~~~~~VR~G 256 (269)
++|+|++.||++|.++ .++ ....+++.|.++++.+++ .|+++ ..+|+|+|+++..... .+.|++|+|
T Consensus 156 ~~~~l~l~Gi~~y~G~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~vsgGgs~~~~~~~~~~~~~elr~G 232 (358)
T cd06819 156 ALPGLRFAGLQAYHGHLQHIRDYEERRAAIAEAAEALQATRDALEA-AGLPC--EIVTGGGTGTYEFEAASGVYTELQAG 232 (358)
T ss_pred hCCCceEeEEEeeCchhccCCCHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC--CEEecCCCcChhhhccCCcceEEccC
Confidence 9999999999886653 111 235677888888888886 48765 6779999999876544 458999999
Q ss_pred hhhhCCCCC
Q 024293 257 STIFGAREY 265 (269)
Q Consensus 257 ~alyG~~p~ 265 (269)
+++|++..|
T Consensus 233 ~~i~~d~~~ 241 (358)
T cd06819 233 SYVFMDADY 241 (358)
T ss_pred ceEEecHHH
Confidence 999998654
No 26
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.96 E-value=9.9e-29 Score=233.66 Aligned_cols=214 Identities=18% Similarity=0.186 Sum_probs=165.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHH-hCCCeeeeccHHHHHHHHHcCCCCceeee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYE-AGHRCFGENYVQEIVEKAAQLPDDLEWHF 109 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~-~G~~~fgva~i~EA~~lr~~i~~~I~~~~ 109 (269)
|+++|++|++.+++.+ + +.++++|+|+|+...+ +.+++ .|++.|+|++++||..++++...+| ++
T Consensus 17 Dldal~~N~~~l~~~~----------~-~~~ir~~vKa~~~~~ll~~~l~~~G~~g~~vas~~Ea~~l~~aG~~~I--Ll 83 (388)
T cd06813 17 DLDALDANAADLVRRA----------G-GKPIRVASKSVRCRALLRRVLAAPGFQGVMAFTLAEALWLARQGFDDI--LV 83 (388)
T ss_pred EHHHHHHHHHHHHHHc----------C-CCcEEEEeccccCHHHHHHHHhhcCCceEEEecHHHHHHHHHcCCCeE--EE
Confidence 9999999999999986 3 4689999999998765 55665 6999999999999999999843676 44
Q ss_pred ecCC-ChhcHHhHhhcCC-CccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCC----------hhhH
Q 024293 110 IGNL-QSNKVKPLLAGVP-NLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVE----------PSGC 177 (269)
Q Consensus 110 lG~~-~~~~~~~lv~~~~-~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~----------~ee~ 177 (269)
.++. .+.++..++++.. ..+++++|||.++++.|++.+.+.++ +++|||+|||| |+|.||. ++++
T Consensus 84 ~~p~~~~~~l~~~~~~~~~~~~i~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~IDtG--m~R~G~~~G~~Rs~~~~~~~~ 160 (388)
T cd06813 84 AYPSVDRAALRELAADPKLGATITLMVDSVEHLDLLDAVAAPMRV-EVRVCIDIDAS--LRFGGLHFGVRRSPLHTPAQA 160 (388)
T ss_pred eCCCCCHHHHHHHHhhhccCCeEEEEEcCHHHHHHHHHHHHhcCC-ceEEEEEECCC--ccccccccCcCCCCCCCHHHH
Confidence 4443 5677888873100 13789999999999999999988888 99999999999 9998873 6889
Q ss_pred HHHHHHHHhcCCCeEEEEeEeeCCC-C---CC-Cc---------------HHHHHHHH-HHHHHHHHHcCCCCCcceeec
Q 024293 178 LELVKHVSQNCPNLEFCGLMTIGMP-D---YT-ST---------------PENFKTLA-KCRSEVCKALGIPEEQCDLSM 236 (269)
Q Consensus 178 ~~~~~~i~~~~~~L~i~GlmTH~a~-~---~~-~~---------------~~~~~~~~-~~~~~l~~~~g~~~~~~~lS~ 236 (269)
.++++.+. .+++|++.|||||+++ . +. +. ..++..+. ++.+.+++ .|++. ..+++
T Consensus 161 ~~l~~~i~-~~~~l~l~Gi~th~g~~a~~~d~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~l~~-~g~~~--~~vNs 236 (388)
T cd06813 161 LALAKAIA-ARPGLRLVGLMGYEAQIAGVGDSVPGKRVKSAVIRLLKKRSIKELAERRAAVVAALRA-EGEDL--EFVNG 236 (388)
T ss_pred HHHHHHHh-cCCCcEEEEEEEEchhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCC--CEEeC
Confidence 99999998 9999999999999664 2 21 11 11222222 45555665 36643 56788
Q ss_pred CCccCHHHHH-HcCCCeeeeChhhhCCCCC
Q 024293 237 GMSGDFELAI-EMGSTNVRIGSTIFGAREY 265 (269)
Q Consensus 237 G~s~~~~~~~-~~~~~~VR~G~alyG~~p~ 265 (269)
|+|++++... +.++|+||||++|||+.|+
T Consensus 237 gGt~s~~~~~~~~~~tevrpGs~lyg~~~~ 266 (388)
T cd06813 237 GGTGSLESTAADAVVTEVTAGSGLYAPALF 266 (388)
T ss_pred CCchhheeecCCCCceEeccceEEecchhh
Confidence 9899887533 3467899999999998876
No 27
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=99.96 E-value=1.8e-28 Score=211.59 Aligned_cols=202 Identities=21% Similarity=0.211 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCceeeeecCCC
Q 024293 36 AATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQ 114 (269)
Q Consensus 36 l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~lG~~~ 114 (269)
|++|++.+++.+ ++++++++|+|+++...+ +.+.++ +..|+|++++|+..+++.+.++-.+++.|+.+
T Consensus 1 l~~N~~~i~~~~----------~~~~~i~~~vKan~~~~i~~~~~~~-~~~~~v~s~~E~~~~~~~g~~~~~I~~~~~~~ 69 (211)
T cd06808 1 IRHNYRRLREAA----------PAGITLFAVVKANANPEVARTLAAL-GTGFDVASLGEALLLRAAGIPPEPILFLGPCK 69 (211)
T ss_pred ChHHHHHHHHhC----------CCCCEEEEEEecCCCHHHHHHHHHc-CCcEEEcCHHHHHHHHHcCCCHHHEEEcCCCC
Confidence 579999999998 557899999999997666 666777 78999999999999988743222347888887
Q ss_pred -hhcHHhHhhcCCCc-cEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeE
Q 024293 115 -SNKVKPLLAGVPNL-AMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLE 192 (269)
Q Consensus 115 -~~~~~~lv~~~~~~-~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~ 192 (269)
++++..++ .+ .++++|+|.++++.|.+.+++.++ +++|+|+||+|..|+|+|+.++++.++++.+. .+|+++
T Consensus 70 ~~~~l~~~~----~~~~~~~~ids~~~l~~l~~~~~~~~~-~~~v~lrv~~g~~~~R~G~~~~e~~~~~~~i~-~~~~l~ 143 (211)
T cd06808 70 QVSELEDAA----EQGVIVVTVDSLEELEKLEEAALKAGP-PARVLLRIDTGDENGKFGVRPEELKALLERAK-ELPHLR 143 (211)
T ss_pred CHHHHHHHH----HcCCCEEEeCCHHHHHHHHHHHHHhCC-CceEEEEEcCCCCCCCCCCCHHHHHHHHHHHH-hCCCCc
Confidence 78888888 35 678999999999999999988888 99999999998668999999999999999998 999999
Q ss_pred EEEeEeeCCCCCC---CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHH---HHcCCCeeeeCh
Q 024293 193 FCGLMTIGMPDYT---STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELA---IEMGSTNVRIGS 257 (269)
Q Consensus 193 i~GlmTH~a~~~~---~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~---~~~~~~~VR~G~ 257 (269)
+.|||||+++.+. ....++++|.++++.+++ .|++. ..+|.|+|..++.. ++.+.|+||||+
T Consensus 144 l~Gl~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~--~~i~~Ggg~~~~~~~~~~~~~~~~vR~G~ 211 (211)
T cd06808 144 LVGLHTHFGSADEDYSPFVEALSRFVAALDQLGE-LGIDL--EQLSIGGSFAILYLQELPLGTFIIVEPGR 211 (211)
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEECCCCCcCcCCCCCCCceEEeCCCC
Confidence 9999999997442 345678888888888877 57654 67888888877665 556899999996
No 28
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.96 E-value=1.9e-27 Score=223.45 Aligned_cols=216 Identities=18% Similarity=0.223 Sum_probs=169.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCceeee
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHF 109 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~ 109 (269)
.|+++|++|++.+++.+. +.++++++|+|+|+...+ +.+.++|+..|+|++++||..++++..+++ ++.
T Consensus 11 id~~~l~~Ni~~~~~~~~---------~~~~~l~~~vKa~~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~aG~~~i-l~~ 80 (374)
T cd06812 11 LDEARMDRNIARLRQRLS---------RLGVRLRPHLKTAKSLEVARRLLAAGASPATVSTLKEAEAFAEAGYRDI-LYA 80 (374)
T ss_pred EeHHHHHHHHHHHHHHHH---------HcCCceeeEecccCCHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCee-EEe
Confidence 399999999999999883 236789999999998776 777899999999999999999998843444 233
Q ss_pred ecCCChhcHHhHhhcCC-CccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChh-h-HHHHHHHHHh
Q 024293 110 IGNLQSNKVKPLLAGVP-NLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPS-G-CLELVKHVSQ 186 (269)
Q Consensus 110 lG~~~~~~~~~lv~~~~-~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~e-e-~~~~~~~i~~ 186 (269)
.+ +.+.++..+++..+ ..++..+|||.+.++.|++.+.+.++ +++|+|+|||| |+|+|+.++ + +..+++.+.
T Consensus 81 ~~-~~~~~~~~~~~l~~~~~~~~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vd~G--~~R~Gv~~~~~~~~~l~~~i~- 155 (374)
T cd06812 81 VG-IAPAKLPRVLALRRQGVNLTILLDSVEQAQAVAAFSRQHGV-RFPVLIEIDCD--GHRGGIAPDSDALLEIARILH- 155 (374)
T ss_pred CC-CCHHHHHHHHHHHhcCCceEEEECCHHHHHHHHHHHHHcCC-ceEEEEEeCCC--CCcCCCCCCcHHHHHHHHHHh-
Confidence 34 35566666552211 24688999999999999999998888 99999999999 999999884 3 667777765
Q ss_pred cCCCeEEEEeEeeCCCC----CC-----CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHH-cCCCeeeeC
Q 024293 187 NCPNLEFCGLMTIGMPD----YT-----STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIE-MGSTNVRIG 256 (269)
Q Consensus 187 ~~~~L~i~GlmTH~a~~----~~-----~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~-~~~~~VR~G 256 (269)
. ++|++.|||+|+++. +. ....+++.+.++.+.+++ .|+++ ..+|.|+|++++.+.. .+.|++|||
T Consensus 156 ~-~~l~l~Gi~~H~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~v~~Ggt~~~~~~~~~~~~~el~~G 231 (374)
T cd06812 156 D-GGAELRGVLTHAGESYACRTPEALAAAAEQERAAAVRAAERLRA-AGLPC--PVVSVGSTPTAHFAEDLTGVTEVRAG 231 (374)
T ss_pred c-CCceEEEEEccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC--CEEeecCChhhhhhcccCCceEeccC
Confidence 4 899999999999642 21 223355568888888877 48765 7889999998776533 567999999
Q ss_pred hhhhCCCCC
Q 024293 257 STIFGAREY 265 (269)
Q Consensus 257 ~alyG~~p~ 265 (269)
+++|.+.++
T Consensus 232 ~y~~~D~~~ 240 (374)
T cd06812 232 VYVFFDLVM 240 (374)
T ss_pred ceeeccHHH
Confidence 999997665
No 29
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=99.95 E-value=7.3e-27 Score=220.47 Aligned_cols=219 Identities=19% Similarity=0.249 Sum_probs=173.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCceee-
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWH- 108 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~- 108 (269)
.|+++|++|++.+++.+. +.++++++|+|+|....+ +.+.++|++.|+|+++.||..+++....+|.+.
T Consensus 8 idl~~l~~N~~~m~~~~~---------~~~~~l~~h~Kt~~~~~i~~~~~~~G~~g~~vas~~Ea~~l~~~G~~~il~~~ 78 (382)
T cd06818 8 LDASALAHNLAWMQAFAA---------AHGVKLAPHGKTTMAPQLFRRQLEAGAWGITVATVAQARVALAFGVRRVLLAN 78 (382)
T ss_pred EEHHHHHHHHHHHHHHHh---------hcCcEEEeecchhhhHHHHHHHHHcCCCEEEEeEHHHHHHHHHcCCCeEEEec
Confidence 499999999999999883 245899999999998776 677889999999999999999998743444221
Q ss_pred -eecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCCh-hhHHHHHHHHHh
Q 024293 109 -FIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP-SGCLELVKHVSQ 186 (269)
Q Consensus 109 -~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~-ee~~~~~~~i~~ 186 (269)
++|+...+++..+++.....++...|||+++++.|++.+.+.++ +++|+|+||+| |+|.|+.+ +++.++++.+.
T Consensus 79 ~~~~~~~~~~l~~l~~~~~~~~i~~~vds~~~l~~L~~~a~~~g~-~~~v~i~vn~g--~~R~G~~~~~~~~~l~~~i~- 154 (382)
T cd06818 79 QLVGKANLRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALER-PLNVLIELGVP--GGRTGVRTEAEALALADAIA- 154 (382)
T ss_pred CcCChHHHHHHHHhhhcCCCCCEEEEECCHHHHHHHHHHHHhcCC-ceEEEEEECCC--CCCCCCCCHHHHHHHHHHHH-
Confidence 24555555666666211145688999999999999999998888 99999999998 99999975 77899999998
Q ss_pred cCCCeEEEEeEeeCCCC---C---C--CcHHHHHHHHHHHHHHHHHcCC-CCCcceeecCCccCHHHHHHc--C------
Q 024293 187 NCPNLEFCGLMTIGMPD---Y---T--STPENFKTLAKCRSEVCKALGI-PEEQCDLSMGMSGDFELAIEM--G------ 249 (269)
Q Consensus 187 ~~~~L~i~GlmTH~a~~---~---~--~~~~~~~~~~~~~~~l~~~~g~-~~~~~~lS~G~s~~~~~~~~~--~------ 249 (269)
.+|+|++.|||+|.++. . + .....|+.+.++.+++++. |+ ..+...+|+|||++|+.+... +
T Consensus 155 ~~~~l~l~Gi~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~ilSgGgT~~~~~~~~~~~~~~~~~~ 233 (382)
T cd06818 155 ASPALRLAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAER-GLFPDRELILTAGGSAWFDLVAEALAALALDGP 233 (382)
T ss_pred cCCCceEeEEEeeccccccCCChhHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCEEEecCCHhHHHHHHhhcccccCCc
Confidence 99999999999998653 1 1 2234677888888888764 54 323468899999999874322 2
Q ss_pred -CCeeeeChhhhCCC
Q 024293 250 -STNVRIGSTIFGAR 263 (269)
Q Consensus 250 -~~~VR~G~alyG~~ 263 (269)
.+++|||.++|++.
T Consensus 234 ~~~el~pG~y~~~D~ 248 (382)
T cd06818 234 VTLVLRSGCYVTHDH 248 (382)
T ss_pred eeEEEecCeeEEecH
Confidence 47999999999985
No 30
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=99.92 E-value=2.6e-23 Score=186.76 Aligned_cols=213 Identities=17% Similarity=0.204 Sum_probs=183.1
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccC-ChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCCc
Q 024293 29 SAATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTK-PVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDDL 105 (269)
Q Consensus 29 ~~~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKah-g~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I 105 (269)
..-|++.|.+|.+.+++.+. ..++++++|+|.. |...+ ..+...|+..+++++++|+..+|++ +..|.
T Consensus 6 l~Idl~~ieeNak~~~~~a~---------~~gI~~~~vtK~~~g~~~iae~l~~~Gi~~iaesr~~n~~~lr~~g~~~~~ 76 (353)
T COG3457 6 LIIDLDKIEENAKVLQETAA---------RYGIELYGVTKQFGGDPFIAEALLALGIEGIAESRIDNAIRLREAGCTIPG 76 (353)
T ss_pred EEEeHHHHHHhHHHHHHHHH---------HcCCEEEEEEeeccCChHHHHHHHhcCcceeeehhHHHHHHHHHcCCCcCc
Confidence 33699999999999999874 3579999999996 46666 6778899999999999999999999 77775
Q ss_pred eeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCCh---hhHHHHHH
Q 024293 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP---SGCLELVK 182 (269)
Q Consensus 106 ~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~---ee~~~~~~ 182 (269)
|++-.....++..++ +..|+ .++++++.++.++++|.+.|+ ..+|+|+||.| ..|.|+.+ +++.+.++
T Consensus 77 --~Llr~P~~sei~~vv---~~~Dv-s~~sel~~arqlse~A~~~Gk-~h~VlLmVd~~--DlreG~~~~~~~~l~~~V~ 147 (353)
T COG3457 77 --HLLRSPCMSEIEDVV---RKVDV-STVSELDTARQLSEAAVRMGK-VHDVLLMVDYG--DLREGQWGFLIEDLEETVE 147 (353)
T ss_pred --eEeecccHHHHHHHH---HhcCe-EEEecHHHHHHHHHHHHHhCc-ceeEEEEEEcc--cccCcchhhHHHHHHHHHH
Confidence 666544567888888 46884 779999999999999999999 99999999999 69999887 89999999
Q ss_pred HHHhcCCCeEEEEeEeeCCC--CCCCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHH---HcCCCeeeeCh
Q 024293 183 HVSQNCPNLEFCGLMTIGMP--DYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAI---EMGSTNVRIGS 257 (269)
Q Consensus 183 ~i~~~~~~L~i~GlmTH~a~--~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~---~~~~~~VR~G~ 257 (269)
+|. ++|++++.||.|||+| +.-|+.+.+..|.+..+.+++..|+.. ..+|.|++.++...+ ..+.|..|||-
T Consensus 148 eI~-~lkGi~~vGlgTnF~Cfg~v~PTp~n~~~ll~~~~~lE~~~Gi~l--~~vsagnats~~~L~~~~~~~inhlriG~ 224 (353)
T COG3457 148 EIQ-QLKGIHLVGLGTNFPCFGDVLPTPENLESLLQGKKKLEASSGIQL--KQVSAGNATSLTLLPMGSLPGINHLRIGE 224 (353)
T ss_pred HHh-cCCCceEEeeecccccccCcCCCcccHHHHHHHHHHHHHhcCcee--EEecCCCccchhhhhcccccccccccccc
Confidence 998 9999999999999998 445888888899999999987568865 889999998877532 34689999999
Q ss_pred hhhCC
Q 024293 258 TIFGA 262 (269)
Q Consensus 258 alyG~ 262 (269)
+++|.
T Consensus 225 al~~g 229 (353)
T COG3457 225 ALTGG 229 (353)
T ss_pred eeecc
Confidence 99987
No 31
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=99.87 E-value=5.3e-21 Score=178.06 Aligned_cols=216 Identities=18% Similarity=0.196 Sum_probs=165.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCceeeee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~l 110 (269)
|++++.+|+..++.++. ..++++.||+|+|++..+ +..+++|+..+.++++.|++.+..+.-.+|-| -.
T Consensus 24 D~dr~~~Ni~r~qa~~~---------~~g~~lrph~KT~k~~~la~~ql~aGa~git~~tl~eae~~a~aGi~dIl~-a~ 93 (368)
T COG3616 24 DLDRLDGNIDRMQARAD---------DHGVRLRPHVKTHKCPELARIQLDAGAWGITCATLGEAEVFADAGIDDILL-AY 93 (368)
T ss_pred hHHHHhhhHHHHHHhcc---------ccCceeecccccccCHHHHHHHHhcCCceeEeechHHHHHHHccCccceEE-ec
Confidence 99999999999999984 357899999999998887 66689999999999999999888776556511 11
Q ss_pred cCCChhcHHhHhhcCCCcc-EEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCCh-hhHHHHHHHHHhcC
Q 024293 111 GNLQSNKVKPLLAGVPNLA-MVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP-SGCLELVKHVSQNC 188 (269)
Q Consensus 111 G~~~~~~~~~lv~~~~~~~-l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~-ee~~~~~~~i~~~~ 188 (269)
+.........+.++....+ +...+||.+.++.|.+.+...++ +++|+|+||+| ++|.|+.. +....+.+.+. ..
T Consensus 94 p~~~~~~~~~L~~l~~~~~~~~~~iDs~~~~~~l~~~~~~~~~-pl~v~iE~D~G--~~R~Gv~t~~~~~~La~~~~-~~ 169 (368)
T COG3616 94 PLPGRAALAALAELLADPPRISVLIDSVEQLDALAALARDAGK-PLRVLIEIDSG--LHRSGVRTPEVAEALAAEIA-AA 169 (368)
T ss_pred CCCchhHHHHHHHhcCCCCceEEEeCCHHHHHHHHHHHHhcCC-CeeEEEEeCCC--CCccCcCChHHHHHHHHhhh-hc
Confidence 2233334443443334566 88999999999999999999998 99999999999 89999986 56677777887 89
Q ss_pred CCeEEEEeEeeCCCCCC--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHH-HcCCCeeeeChhhhCCCCC
Q 024293 189 PNLEFCGLMTIGMPDYT--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAI-EMGSTNVRIGSTIFGAREY 265 (269)
Q Consensus 189 ~~L~i~GlmTH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~-~~~~~~VR~G~alyG~~p~ 265 (269)
+.|++.|+|||.++... .....+.+ ..+...+.. .|+.+ ..+|+|+|+++.... ....+++|+|.++|.+.-+
T Consensus 170 ~~l~~~Gv~~y~gh~~~~~~~~~~~~~-~~a~~~~~~-~g~~~--~~vt~ggtp~~~~~~~~~~~~e~r~G~Y~~~D~~~ 245 (368)
T COG3616 170 PGLRLAGVMTYPGHSYGPGSEVAAAER-VHAAALLGA-VGRAA--PVLTSGGTPTAELVAGLSSTTELRAGNYVFNDLVQ 245 (368)
T ss_pred cceEEeeeecccccccCCcchhhhhhh-hhHHHHhcc-cCCcc--ceeecCCCCchhhhccCCcceeeccCceeehhhhh
Confidence 99999999999976321 11111222 233333443 36654 788999999988764 3467999999999987654
No 32
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=99.86 E-value=2e-20 Score=175.01 Aligned_cols=186 Identities=19% Similarity=0.250 Sum_probs=151.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCCceee
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDDLEWH 108 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I~~~ 108 (269)
.|+++|++|++.+++.+ +.++++++++|+++...+ +.+.+.|+ .|.|+++.|+..+++. +..+. ++
T Consensus 6 id~~~l~~n~~~l~~~~----------~~~~~i~~avKan~~~~i~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~-iv 73 (368)
T cd06810 6 YDLDIIRAHYAALKEAL----------PSGVKLFYAVKANPNPHVLRTLAEAGT-GFDVASKGELALALAAGVPPER-II 73 (368)
T ss_pred eeHHHHHHHHHHHHHhC----------CCCCeEEEEEccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCCHHH-EE
Confidence 38999999999999988 556899999999987666 77788998 9999999999998887 44332 24
Q ss_pred eecCCC-hhcHHhHhhcCCCcc-EEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCC-----------CCCccCCChh
Q 024293 109 FIGNLQ-SNKVKPLLAGVPNLA-MVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSG-----------EESKSGVEPS 175 (269)
Q Consensus 109 ~lG~~~-~~~~~~lv~~~~~~~-l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~-----------em~R~G~~~e 175 (269)
+-|+.. .+++..++ ..+ .+.++||+++++.|++.+.+.++ +++|+|+||+|. ..+|+|+.++
T Consensus 74 ~~gp~~~~~~l~~~~----~~~~~~~~vds~~el~~l~~~~~~~~~-~~~v~lrin~g~~~~~~~~~~~~~~srfGi~~~ 148 (368)
T cd06810 74 FTGPAKSVSEIEAAL----ASGVDHIVVDSLDELERLNELAKKLGP-KARILLRVNPDVSAGTHKISTGGLKSKFGLSLS 148 (368)
T ss_pred EcCCCCCHHHHHHHH----HCCCCEEEeCCHHHHHHHHHHHHHhCC-CCeEEEEECCCCCCCcccCccCCCCCCcCCCHH
Confidence 558764 47788887 367 78999999999999999988887 899999999992 1179999999
Q ss_pred hHHHHHHHHHhcCCCeEEEEeEeeCCCCC---CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCC
Q 024293 176 GCLELVKHVSQNCPNLEFCGLMTIGMPDY---TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (269)
Q Consensus 176 e~~~~~~~i~~~~~~L~i~GlmTH~a~~~---~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 238 (269)
++.++++.+. .++ +++.|||+|+++.. +...+.++.+.++++++++ .|.+. ..+|+|+
T Consensus 149 e~~~~~~~~~-~~~-l~l~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~l~~-~g~~~--~~id~GG 209 (368)
T cd06810 149 EARAALERAK-ELD-LRLVGLHFHVGSQILDLETIVQALSDARELIEELVE-MGFPL--EMLDLGG 209 (368)
T ss_pred HHHHHHHHHH-hCC-CcEEEEEEcCCcCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEeCC
Confidence 9999999998 888 99999999999632 2334567777788888877 47654 7888754
No 33
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=99.86 E-value=2.2e-20 Score=175.66 Aligned_cols=210 Identities=16% Similarity=0.212 Sum_probs=166.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcC-CC-Cceee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQL-PD-DLEWH 108 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i-~~-~I~~~ 108 (269)
|+++|++|++.+++.+ ++++++++++|++....+ +.+.+.| .+|.|+++.|+...++.. +. +| +
T Consensus 13 d~~~l~~n~~~l~~~~----------~~~~~~~yavKan~~~~v~~~l~~~g-~g~~vaS~~E~~~~~~~G~~~~~I--~ 79 (382)
T cd06839 13 DRDRVRERYAALRAAL----------PPAIEIYYSLKANPNPALVAHLRQLG-DGAEVASAGELALALEAGVPPEKI--L 79 (382)
T ss_pred eHHHHHHHHHHHHHhc----------CCCcEEEEEeccCCCHHHHHHHHHcC-CCEEEeCHHHHHHHHHcCCCHHHE--E
Confidence 9999999999999987 556899999999988776 6666766 789999999999888874 32 45 5
Q ss_pred eecCC-ChhcHHhHhhcCCCcc-EEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeC-------C----CCCCccCCChh
Q 024293 109 FIGNL-QSNKVKPLLAGVPNLA-MVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNT-------S----GEESKSGVEPS 175 (269)
Q Consensus 109 ~lG~~-~~~~~~~lv~~~~~~~-l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDt-------G----~em~R~G~~~e 175 (269)
+.|+. ..+++..++ ..+ ...+|||.++++.|.+.+.+.++ +++|+|+||+ | +..+|+|++++
T Consensus 80 ~~~~~k~~~~l~~a~----~~g~~~i~vds~~el~~l~~~a~~~~~-~~~v~lRin~~~~~~~~g~~~~~~~sKfG~~~~ 154 (382)
T cd06839 80 FAGPGKSDAELRRAI----EAGIGTINVESLEELERIDALAEEHGV-VARVALRINPDFELKGSGMKMGGGPSQFGIDVE 154 (382)
T ss_pred EeCCCCCHHHHHHHH----HCCCCEEEECCHHHHHHHHHHHHhcCC-CCeEEEEECCCCCCCCCccccCCCCCCcCCCHH
Confidence 67874 677888877 367 68999999999999999988777 8999999995 3 12289999999
Q ss_pred hHHHHHHHHHhcCCCeEEEEeEeeCCCC-CC--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHH-HcCCC
Q 024293 176 GCLELVKHVSQNCPNLEFCGLMTIGMPD-YT--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAI-EMGST 251 (269)
Q Consensus 176 e~~~~~~~i~~~~~~L~i~GlmTH~a~~-~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~-~~~~~ 251 (269)
++.++++.+. .++++++.||+.|.++. .+ ....+++++.++++++.+..|.++ ..+++|++...+... ....|
T Consensus 155 ~~~~~~~~~~-~~~~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~idiGGG~~~~~~~~~~~~~ 231 (382)
T cd06839 155 ELPAVLARIA-ALPNLRFVGLHIYPGTQILDADALIEAFRQTLALALRLAEELGLPL--EFLDLGGGFGIPYFPGETPLD 231 (382)
T ss_pred HHHHHHHHHH-hCCCCcEEEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhhCCCC--CEEEecCccccccCCCCCCCC
Confidence 9999999998 88999999999997742 22 334577788888888876557654 778888765433221 23568
Q ss_pred eeeeChhhhCC
Q 024293 252 NVRIGSTIFGA 262 (269)
Q Consensus 252 ~VR~G~alyG~ 262 (269)
+.|+|..||+.
T Consensus 232 ~~~~~~~i~~~ 242 (382)
T cd06839 232 LEALGAALAAL 242 (382)
T ss_pred HHHHHHHHHHH
Confidence 88888888874
No 34
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.84 E-value=2.6e-19 Score=167.84 Aligned_cols=187 Identities=21% Similarity=0.250 Sum_probs=154.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCC-CCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCC-Cce
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPP-DRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPD-DLE 106 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~-~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~-~I~ 106 (269)
.|+++|++|++.+++.+ + +++++++++|++....+ +.+.+.| ..|.|+++.|+..+++. +.. +|
T Consensus 8 ~d~~~l~~n~~~l~~~~----------~~~~~~~~yavKaN~~~~v~~~l~~~G-~g~~vaS~~E~~~~~~~G~~~~~I- 75 (373)
T cd06828 8 YDEATIRENYRRLKEAF----------SGPGFKICYAVKANSNLAILKLLAEEG-LGADVVSGGELYRALKAGFPPERI- 75 (373)
T ss_pred EcHHHHHHHHHHHHHhh----------CCCCcEEEEEehhCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCCcccE-
Confidence 38999999999999998 5 47899999999987666 7778899 89999999999988887 443 45
Q ss_pred eeeecCC-ChhcHHhHhhcCCCcc-EEEeeCcHHHHHHHHHHHHhcCCCceeEEEEE------------eCCCCCCccCC
Q 024293 107 WHFIGNL-QSNKVKPLLAGVPNLA-MVESVDNEKIAGRLNRMVETMGRKPLKVLVQV------------NTSGEESKSGV 172 (269)
Q Consensus 107 ~~~lG~~-~~~~~~~lv~~~~~~~-l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkI------------DtG~em~R~G~ 172 (269)
++.|+. ..+++..++ ..+ .+.++||.++++.|.+.+.+.++ +++|+|+| |||...+|+|+
T Consensus 76 -~~~~p~k~~~~l~~a~----~~g~~~~~ids~~el~~l~~~a~~~~~-~~~v~lRv~~~~~~~~~~~~~~g~~~srfGi 149 (373)
T cd06828 76 -VFTGNGKSDEELELAL----ELGILRINVDSLSELERLGEIAPELGK-GAPVALRVNPGVDAGTHPYISTGGKDSKFGI 149 (373)
T ss_pred -EEeCCCCCHHHHHHHH----HcCCeEEEECCHHHHHHHHHHHHhcCC-CCeEEEEECCCCCCCCCCCeecCCCCCCCCC
Confidence 566875 668888888 356 88999999999999999998887 88998866 46744499999
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEEeEeeCCCCC---CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCc
Q 024293 173 EPSGCLELVKHVSQNCPNLEFCGLMTIGMPDY---TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS 239 (269)
Q Consensus 173 ~~ee~~~~~~~i~~~~~~L~i~GlmTH~a~~~---~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s 239 (269)
.++++.++++.+. .++++++.||++|+++.. +....+++++.++++++++ .|+.+ .+++.|+.
T Consensus 150 ~~~e~~~~~~~~~-~~~~l~l~Gi~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~idiGGG 215 (373)
T cd06828 150 PLEQALEAYRRAK-ELPGLKLVGLHCHIGSQILDLEPFVEAAEKLLDLAAELRE-LGIDL--EFLDLGGG 215 (373)
T ss_pred CHHHHHHHHHHHH-hCCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEeCCC
Confidence 9999999999998 899999999999998632 2455688888888888885 57654 77777654
No 35
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=99.82 E-value=3.4e-19 Score=166.70 Aligned_cols=207 Identities=16% Similarity=0.159 Sum_probs=158.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCCceee
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDDLEWH 108 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I~~~ 108 (269)
.|+++|++|++.+++.+ + +.+++.++|++....+ +.+.+.|+ .|.|+++.|+..+++. +..+. ++
T Consensus 7 id~~~l~~N~~~~~~~~----------~-~~~~~~avKAN~~~~v~~~l~~~G~-g~~vaS~~E~~~~~~~G~~~~~-i~ 73 (362)
T cd00622 7 VDLGDVVRKYRRWKKAL----------P-RVRPFYAVKCNPDPAVLRTLAALGA-GFDCASKGEIELVLGLGVSPER-II 73 (362)
T ss_pred EeHHHHHHHHHHHHHHC----------C-CCeEEEEeccCCCHHHHHHHHHcCC-CeEecCHHHHHHHHHcCCCcce-EE
Confidence 38999999999999987 4 4689999999998776 77788999 9999999999999888 44342 25
Q ss_pred eecCC-ChhcHHhHhhcCCCccE-EEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCC------ccCCChhhHHHH
Q 024293 109 FIGNL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEES------KSGVEPSGCLEL 180 (269)
Q Consensus 109 ~lG~~-~~~~~~~lv~~~~~~~l-~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~------R~G~~~ee~~~~ 180 (269)
+.|+. .+++++.+++ .++ ...+||+++++.|.+.+. +. ++.|+|++|+| |+ |+|+.++++.++
T Consensus 74 ~~~~~k~~~~l~~a~~----~gi~~~~~ds~~el~~l~~~~~--~~-~v~vri~~~~~--~~~~~~~sRfGi~~~~~~~~ 144 (362)
T cd00622 74 FANPCKSISDIRYAAE----LGVRLFTFDSEDELEKIAKHAP--GA-KLLLRIATDDS--GALCPLSRKFGADPEEAREL 144 (362)
T ss_pred EcCCCCCHHHHHHHHH----cCCCEEEECCHHHHHHHHHHCC--CC-EEEEEEeeCCC--CCCCcccCCCCCCHHHHHHH
Confidence 66765 6788888883 454 345799999999998774 34 78899999998 77 799999999999
Q ss_pred HHHHHhcCCCeEEEEeEeeCCCCC-C--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHH-----HHHcCCCe
Q 024293 181 VKHVSQNCPNLEFCGLMTIGMPDY-T--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFEL-----AIEMGSTN 252 (269)
Q Consensus 181 ~~~i~~~~~~L~i~GlmTH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~-----~~~~~~~~ 252 (269)
++.+. . .++++.||++|+++.. + ....+++++.++++.+++ .|+.. ..++.|+....+. ..+...++
T Consensus 145 ~~~~~-~-~~~~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~--~~id~GGG~~~~y~~~~~~~~~~~~~ 219 (362)
T cd00622 145 LRRAK-E-LGLNVVGVSFHVGSQCTDPSAYVDAIADAREVFDEAAE-LGFKL--KLLDIGGGFPGSYDGVVPSFEEIAAV 219 (362)
T ss_pred HHHHH-H-cCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCc--CEEEeCCCcCcccCCCCCCHHHHHHH
Confidence 99987 6 5899999999999733 2 345677788888888776 47553 6676554332221 11234577
Q ss_pred eeeChhhhCCCC
Q 024293 253 VRIGSTIFGARE 264 (269)
Q Consensus 253 VR~G~alyG~~p 264 (269)
+|.++..|+..+
T Consensus 220 i~~~~~~~~~~~ 231 (362)
T cd00622 220 INRALDEYFPDE 231 (362)
T ss_pred HHHHHHHhCCcC
Confidence 888888888654
No 36
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=99.82 E-value=2.3e-18 Score=164.79 Aligned_cols=190 Identities=12% Similarity=0.083 Sum_probs=153.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCC-ceee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDD-LEWH 108 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~-I~~~ 108 (269)
|+++|++|++.+++.+... +.++++..++|+|....+ +.+.+.|+ +|.|+++.|+...++. ++.+ | +
T Consensus 16 d~~~l~~N~~~l~~~~~~~-------~~~~~~~yavKaN~~~~il~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~I--~ 85 (423)
T cd06842 16 FPQTFRENIAALRAVLDRH-------GVDGRVYFARKANKSLALVRAAAAAGI-GVDVASLAELRQALAAGVRGDRI--V 85 (423)
T ss_pred cHHHHHHHHHHHHHHHHHh-------CCCeEEEEEeccCCCHHHHHHHHHcCC-CEEECCHHHHHHHHHCCCCCCeE--E
Confidence 9999999999999988432 335678999999998776 77889998 8999999999988887 4433 5 5
Q ss_pred eecCCChhc-HHhHhhcCCCccEEEeeCcHHHHHHHHHHHHh-cCCCceeEEEEEeCCC--CCCccCCChhhHHHHHHHH
Q 024293 109 FIGNLQSNK-VKPLLAGVPNLAMVESVDNEKIAGRLNRMVET-MGRKPLKVLVQVNTSG--EESKSGVEPSGCLELVKHV 184 (269)
Q Consensus 109 ~lG~~~~~~-~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~-~~~~~i~V~lkIDtG~--em~R~G~~~ee~~~~~~~i 184 (269)
+.|+..+.+ +..++ ..++..++||.++++.|.+.+.. .++ +++|+|+||+|. .|+|+|+.++++.++++.+
T Consensus 86 ~~g~~k~~~~i~~a~----~~gi~i~vDs~~el~~l~~~a~~~~~~-~~~v~lRIn~~~~~~~sRfGi~~~e~~~~~~~i 160 (423)
T cd06842 86 ATGPAKTDEFLWLAV----RHGATIAVDSLDELDRLLALARGYTTG-PARVLLRLSPFPASLPSRFGMPAAEVRTALERL 160 (423)
T ss_pred EECCCCCHHHHHHHH----hCCCEEEECCHHHHHHHHHHHHhcCCC-CCEEEEEEeCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 778887644 66666 46788999999999999999987 777 899999999974 4799999989999999999
Q ss_pred HhcC-CCeEEEEeEeeCCCCC-CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCcc
Q 024293 185 SQNC-PNLEFCGLMTIGMPDY-TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSG 240 (269)
Q Consensus 185 ~~~~-~~L~i~GlmTH~a~~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~ 240 (269)
. .+ +++++.||++|+++.+ +.....++.+.++++.+++ .|+++ .+++.|+.-
T Consensus 161 ~-~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~idiGGG~ 214 (423)
T cd06842 161 A-QLRERVRLVGFHFHLDGYSAAQRVAALQECLPLIDRARA-LGLAP--RFIDIGGGF 214 (423)
T ss_pred H-hcCCCCeEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEeCCCc
Confidence 8 88 8999999999999742 2223456666677777766 47654 788876553
No 37
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=99.82 E-value=1.6e-18 Score=163.22 Aligned_cols=186 Identities=18% Similarity=0.174 Sum_probs=141.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCC-CCceeee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLP-DDLEWHF 109 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~-~~I~~~~ 109 (269)
|+++|++|++.+++.+ ++++++++++|+++...+ +.+.+ +...|.|+++.|+..+++... .+| ++
T Consensus 8 d~~~l~~N~~~l~~~~----------~~~~~i~yavKaN~~~~vl~~l~~-~g~g~dvaS~~E~~~~~~~~~~~~I--~~ 74 (377)
T cd06843 8 DLAALRAHARALRASL----------PPGCELFYAIKANSDPPILRALAP-HVDGFEVASGGEIAHVRAAVPDAPL--IF 74 (377)
T ss_pred cHHHHHHHHHHHHHhc----------CCCCeEEEEeccCCCHHHHHHHHH-cCCcEEEeCHHHHHHHHhcCCCCeE--EE
Confidence 8999999999999987 556789999999998776 55544 567899999999998887643 345 56
Q ss_pred ecCC-ChhcHHhHhhcCCCccE-EEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCC--------CC----ccCCChh
Q 024293 110 IGNL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE--------ES----KSGVEPS 175 (269)
Q Consensus 110 lG~~-~~~~~~~lv~~~~~~~l-~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~e--------m~----R~G~~~e 175 (269)
.|+. ..+++..++ ..++ ..+|||+++++.|.+.+.+.++ +++|+|+||+|.+ |+ |+|+.++
T Consensus 75 ~gp~k~~~~l~~a~----~~gi~~i~vds~~el~~l~~~a~~~~~-~~~v~lRi~~~~~~~~~~~~~~~~~~srfG~~~~ 149 (377)
T cd06843 75 GGPGKTDSELAQAL----AQGVERIHVESELELRRLNAVARRAGR-TAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEA 149 (377)
T ss_pred eCCCCCHHHHHHHH----HcCCCEEEeCCHHHHHHHHHHHHHcCC-CceEEEEECCCCCCCCCcceecCCCCCCCCcCHH
Confidence 6763 446677777 3565 4579999999999999988887 8999999999621 43 9999999
Q ss_pred hHHHHHHHHHhcCCCeEEEEeEeeCCCCC-C--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCC
Q 024293 176 GCLELVKHVSQNCPNLEFCGLMTIGMPDY-T--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (269)
Q Consensus 176 e~~~~~~~i~~~~~~L~i~GlmTH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 238 (269)
++.++++.+. .++++++.||++|+++.- + .....++...++..++.+.+|++. .++..|+
T Consensus 150 ~~~~~~~~~~-~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~idiGG 212 (377)
T cd06843 150 DLPDALELLR-DLPNIRLRGFHFHLMSHNLDAAAHLALVKAYLETARQWAAEHGLDL--DVVNVGG 212 (377)
T ss_pred HHHHHHHHHH-hCCCccEEEEEEEcCcCcCChHHHHHHHHHHHHHHHHHHHHhCCCC--cEEEecC
Confidence 9999999998 899999999999998632 2 222334444444445554457654 6776653
No 38
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=99.81 E-value=1.4e-18 Score=164.57 Aligned_cols=206 Identities=15% Similarity=0.186 Sum_probs=154.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCC-Cceee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPD-DLEWH 108 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~-~I~~~ 108 (269)
|++.|++|++.+++.+ +++++++.++|+++...+ +.+. .+...|.|+++.|+...++. ++. +| +
T Consensus 31 d~~~l~~n~~~l~~~~----------~~~~~i~yavKaN~~~~vl~~l~-~~g~g~dvaS~~E~~~~~~~G~~~~~I--~ 97 (398)
T TIGR03099 31 DRGLVSERVAALRKAL----------PEELAIHYAVKANPMPALLAHMA-PLVDGFDVASAGELAVALDTGYDPGCI--S 97 (398)
T ss_pred eHHHHHHHHHHHHHhc----------cccCcEEEEeccCCCHHHHHHHH-HcCCcEEEeCHHHHHHHHHcCCChhHE--E
Confidence 9999999999999988 656789999999887676 5554 46689999999999988887 444 36 6
Q ss_pred eecCC-ChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCC-----CC------CccCCChhh
Q 024293 109 FIGNL-QSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSG-----EE------SKSGVEPSG 176 (269)
Q Consensus 109 ~lG~~-~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~-----em------~R~G~~~ee 176 (269)
+.|+. ..++++.++ ..+++.+|||++.++.|.+.+.+.++ +++|+|+||++. +| +|+|+++++
T Consensus 98 ~~gp~k~~~~l~~a~----~~gv~i~vDs~~el~~l~~~a~~~~~-~~~v~LRin~~~~~~~~~~~~~~~~srFGi~~~e 172 (398)
T TIGR03099 98 FAGPGKTDAELRRAL----AAGVLINVESLRELNRLAALSEALGL-RARVAVRVNPDFELKGSGMKMGGGAKQFGIDAEQ 172 (398)
T ss_pred EeCCCCCHHHHHHHH----hCCCEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECCCCCCCCcccccCCCCCcCCCCHHH
Confidence 77885 677888887 47889999999999999999988887 899999999631 24 999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEeEeeCCCCC-CC---cHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHH-cCCC
Q 024293 177 CLELVKHVSQNCPNLEFCGLMTIGMPDY-TS---TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIE-MGST 251 (269)
Q Consensus 177 ~~~~~~~i~~~~~~L~i~GlmTH~a~~~-~~---~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~-~~~~ 251 (269)
+.++++.+. ++ +|++.|+..|.+... ++ ...+...+..+.+..++ .|+++ ..+++|++...+.... ...|
T Consensus 173 ~~~~~~~~~-~~-~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~--~~idiGGG~~v~~~~~~~~~~ 247 (398)
T TIGR03099 173 VPAALAFIK-AA-DLDFQGFHIFAGSQNLNAEAIIEAQAKTLALALRLAES-APAPV--RVINIGGGFGIPYFPGNPPLD 247 (398)
T ss_pred HHHHHHHHH-hC-CCeEEEEEecccccCCCHHHHHHHHHHHHHHHHHHHHH-hCCCC--CEEEeCCcccCCCCCCCCCCC
Confidence 999999998 77 899999976665432 21 12222333333443443 47765 5677776543332221 2468
Q ss_pred eeeeChhhh
Q 024293 252 NVRIGSTIF 260 (269)
Q Consensus 252 ~VR~G~aly 260 (269)
+.|+|.+||
T Consensus 248 ~~~~~~~l~ 256 (398)
T TIGR03099 248 LAPVGAALA 256 (398)
T ss_pred HHHHHHHHH
Confidence 888888887
No 39
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=99.81 E-value=4.3e-18 Score=162.20 Aligned_cols=186 Identities=22% Similarity=0.234 Sum_probs=152.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCC-CcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCC-Ccee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPD-RIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPD-DLEW 107 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~-~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~-~I~~ 107 (269)
|++.|++|++.+++.+ +. ++++++++|++....+ +.+.+.|+ +|.|+++.|+...++. ++. +|
T Consensus 31 d~~~l~~n~~~l~~~~----------~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~I-- 97 (417)
T TIGR01048 31 DEETIRERFRAYKEAF----------GGAYSLVCYAVKANSNLALLRLLAELGS-GFDVVSGGELYRALAAGFPPEKI-- 97 (417)
T ss_pred eHHHHHHHHHHHHHhh----------CCCCceEEEEehhCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCCcceE--
Confidence 9999999999999988 54 6889999999987666 77888996 8999999999988887 443 34
Q ss_pred eeecC-CChhcHHhHhhcCCCccEE-EeeCcHHHHHHHHHHHHhcCCCceeEEEEEe------------CCCCCCccCCC
Q 024293 108 HFIGN-LQSNKVKPLLAGVPNLAMV-ESVDNEKIAGRLNRMVETMGRKPLKVLVQVN------------TSGEESKSGVE 173 (269)
Q Consensus 108 ~~lG~-~~~~~~~~lv~~~~~~~l~-~~v~s~~~a~~L~~~a~~~~~~~i~V~lkID------------tG~em~R~G~~ 173 (269)
.+.|+ ...++++.++ ..++. .++||++.++.|.+.+.+.++ +++|.|.|| ||.+.+|+|+.
T Consensus 98 ~~~gp~k~~~~l~~a~----~~gi~~i~iDs~~el~~l~~~a~~~~~-~~~v~lRIn~~~~~~~~~~~~~g~~~srfGi~ 172 (417)
T TIGR01048 98 VFNGNGKSRAELERAL----ELGIRCINVDSESELELLNEIAPELGK-KARVSLRVNPGVDAKTHPYISTGLEDSKFGID 172 (417)
T ss_pred EEeCCCCCHHHHHHHH----HcCCCEEEeCCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCCCCeecCCCCCCCCCC
Confidence 46677 4678888887 46776 999999999999999988877 889988877 45334999999
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEeEeeCCCCC---CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCc
Q 024293 174 PSGCLELVKHVSQNCPNLEFCGLMTIGMPDY---TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS 239 (269)
Q Consensus 174 ~ee~~~~~~~i~~~~~~L~i~GlmTH~a~~~---~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s 239 (269)
++++.++++.+. .++++++.||++|+++.. +.....++.+.++++.+++ .|.++ .++++|+.
T Consensus 173 ~~~~~~~~~~~~-~~~~l~l~Glh~H~gs~~~d~~~~~~~~~~~~~~~~~l~~-~g~~l--~~idiGGG 237 (417)
T TIGR01048 173 VEEALEAYLYAL-QLPHLELVGIHCHIGSQITDLSPFVEAAEKVVDLVEELKA-EGIDL--EFLDLGGG 237 (417)
T ss_pred HHHHHHHHHHHH-hCCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHHHh-cCCCc--cEEEeCCc
Confidence 999999999998 999999999999998632 2334577778888888876 47654 78898764
No 40
>PLN02537 diaminopimelate decarboxylase
Probab=99.80 E-value=4.9e-18 Score=161.71 Aligned_cols=183 Identities=15% Similarity=0.101 Sum_probs=144.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCC-CcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCCceee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPD-RIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDDLEWH 108 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~-~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I~~~ 108 (269)
|+++|++|++.+++.+ +. ++++++++|++....+ +.+.++|+..++++..++...+ +. ++.+. +.
T Consensus 24 d~~~l~~N~~~~~~~~----------~~~~~~i~yavKaN~~~~il~~l~~~G~~~~~~S~~E~~~al-~~G~~~~~-ii 91 (410)
T PLN02537 24 SKPQITRNYEAYKEAL----------EGLRSIIGYAIKANNNLKILEHLRELGCGAVLVSGNELRLAL-RAGFDPTR-CI 91 (410)
T ss_pred eHHHHHHHHHHHHHHh----------ccCCceEEEEehhcCCHHHHHHHHHcCCCEEEeCHHHHHHHH-HcCCCcce-EE
Confidence 9999999999999988 43 5679999999998776 7778999999999886666654 44 55553 24
Q ss_pred eecCC-ChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEe------------CCCCC--CccCCC
Q 024293 109 FIGNL-QSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVN------------TSGEE--SKSGVE 173 (269)
Q Consensus 109 ~lG~~-~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkID------------tG~em--~R~G~~ 173 (269)
+.|+. .++.++.++ ..++..++||.++++.|.+.+.+.++ +++|+|+|| || | +|+|+.
T Consensus 92 ~~g~~k~~~~l~~a~----~~gv~i~ids~~el~~l~~~a~~~~~-~~~v~lRvnp~~~~~~~~~i~tG--~~~sRfGi~ 164 (410)
T PLN02537 92 FNGNGKLLEDLVLAA----QEGVFVNVDSEFDLENIVEAARIAGK-KVNVLLRINPDVDPQVHPYVATG--NKNSKFGIR 164 (410)
T ss_pred EECCCCCHHHHHHHH----HCCCEEEECCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCCCccccC--CCCCCCCCC
Confidence 44554 456777776 46788999999999999999988887 899999998 55 6 999999
Q ss_pred hhhHHHHHHHHHhcCC-CeEEEEeEeeCCCCC---CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecC
Q 024293 174 PSGCLELVKHVSQNCP-NLEFCGLMTIGMPDY---TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMG 237 (269)
Q Consensus 174 ~ee~~~~~~~i~~~~~-~L~i~GlmTH~a~~~---~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G 237 (269)
++++.++++.+. .+| +|++.||++|+++.. +.....++...++++.+++ .|+++ ..++.|
T Consensus 165 ~~~~~~~~~~~~-~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~--~~idiG 228 (410)
T PLN02537 165 NEKLQWFLDAVK-AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYVDEIRA-QGFEL--SYLNIG 228 (410)
T ss_pred HHHHHHHHHHHH-hCCCCCcEEEEEeccCCCCCchHHHHHHHHHHHHHHHHHHH-cCCCc--cEEEcC
Confidence 999999999998 888 999999999998632 2223445566777777776 48765 677755
No 41
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=99.79 E-value=2.6e-17 Score=155.17 Aligned_cols=186 Identities=17% Similarity=0.182 Sum_probs=141.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCC-ceee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDD-LEWH 108 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~-I~~~ 108 (269)
|+++|++|++.+++.+.+. .++++++.++|+.....+ +.+.+.|+..+ |++..|+...+.. +..+ | +
T Consensus 13 d~~~l~~n~~~l~~~~~~~-------~~~~~i~yavKaN~~~~vl~~l~~~g~~~d-vaS~~E~~~~~~~G~~~~~I--i 82 (379)
T cd06841 13 DEDALRENYRELLGAFKKR-------YPNVVIAYSYKTNYLPAICKILHEEGGYAE-VVSAMEYELALKLGVPGKRI--I 82 (379)
T ss_pred eHHHHHHHHHHHHHHHhhc-------CCCeEEEEEehhcccHHHHHHHHHcCCeEE-EeCHHHHHHHHHcCCChHHE--E
Confidence 9999999999999988310 145789999999887665 77788999888 7789999988887 4333 4 5
Q ss_pred eecCCC-hhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCC---CCccCCChhhHHHHHHHH
Q 024293 109 FIGNLQ-SNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE---ESKSGVEPSGCLELVKHV 184 (269)
Q Consensus 109 ~lG~~~-~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~e---m~R~G~~~ee~~~~~~~i 184 (269)
+.|+.. .+++..++ ..+++.+|||+++++.|.+.+.+.++ +++|+|+||++.+ |+|+|++++++.++++.+
T Consensus 83 ~~g~~k~~~~l~~a~----~~g~~i~ids~~el~~l~~~~~~~~~-~~~v~lRv~~~~g~~~~~rfGi~~~e~~~~~~~~ 157 (379)
T cd06841 83 FNGPYKSKEELEKAL----EEGALINIDSFDELERILEIAKELGR-VAKVGIRLNMNYGNNVWSRFGFDIEENGEALAAL 157 (379)
T ss_pred EECCCCCHHHHHHHH----HCCCEEEECCHHHHHHHHHHHHhcCC-cceEEEEECCCCCCCCCCCCCCchhhhHHHHHHH
Confidence 668764 47888887 36789999999999999999988887 8999999998655 999999998876666655
Q ss_pred Hh--cCCCeEEEEeEeeCCCCC-C--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecC
Q 024293 185 SQ--NCPNLEFCGLMTIGMPDY-T--STPENFKTLAKCRSEVCKALGIPEEQCDLSMG 237 (269)
Q Consensus 185 ~~--~~~~L~i~GlmTH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G 237 (269)
.+ +.+++++.||++|+++.. + ....+++++..+++++ .|.+. ..+..|
T Consensus 158 ~~~~~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~---~g~~~--~~idiG 210 (379)
T cd06841 158 KKIQESKNLSLVGLHCHVGSNILNPEAYSAAAKKLIELLDRL---FGLEL--EYLDLG 210 (379)
T ss_pred HHhhcCCCeeEEEEEecCCCccCChHHHHHHHHHHHHHHHHh---cCCCC--CEEEeC
Confidence 40 448999999999998643 2 2334555555555555 25543 566554
No 42
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=99.46 E-value=5.6e-12 Score=120.72 Aligned_cols=177 Identities=15% Similarity=0.139 Sum_probs=131.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCC-----C
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPD-----D 104 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~-----~ 104 (269)
|++.|+.|++.+++ + + ++...+|+|+...+ +.+.+.|+ .|-|+++.|+...+.. .++ +
T Consensus 32 d~~~l~~n~~~l~~-~----------~---~i~yavKan~~~~il~~~~~~G~-g~dvaS~~E~~~a~~~G~~~~~~~~~ 96 (420)
T PRK11165 32 DADIIRRRIAQLRQ-F----------D---VIRFAQKACSNIHILRLMREQGV-KVDAVSLGEIERALAAGYKPGTEPDE 96 (420)
T ss_pred cHHHHHHHHHHHhc-c----------C---cceEEehhCCCHHHHHHHHHcCC-CEEEeCHHHHHHHHHcCCCCCCCCCe
Confidence 99999999999985 4 3 58899999998776 77889998 7999999999977766 443 3
Q ss_pred ceeeeecCC-ChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCC------------CCCccC
Q 024293 105 LEWHFIGNL-QSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSG------------EESKSG 171 (269)
Q Consensus 105 I~~~~lG~~-~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~------------em~R~G 171 (269)
| .+-|+. ..++++.++ ..+++.++||++.++.|.+.+. ..+|.|.||.|. .-+|+|
T Consensus 97 I--i~~gp~k~~~~l~~a~----~~gv~i~vDs~~el~~i~~~~~-----~~~v~lRvn~~~~~~~~~~~~~~~~~sKFG 165 (420)
T PRK11165 97 I--VFTADVIDRATLARVV----ELKIPVNAGSIDMLDQLGQVSP-----GHRVWLRINPGFGHGHSQKTNTGGENSKHG 165 (420)
T ss_pred E--EEeCCCCCHHHHHHHH----HCCCEEEECCHHHHHHHHHhcC-----CCcEEEEECCCCCCCCCCceecCCCCCCCC
Confidence 5 566887 457888888 3677889999999999998864 357899998762 135699
Q ss_pred CChhhHHHHHHHHHhcCCCeEEEEeEeeCCCCCCCcHHHHHH-HHHHHHHHHHHcCCCCCcceeecCCccC
Q 024293 172 VEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKT-LAKCRSEVCKALGIPEEQCDLSMGMSGD 241 (269)
Q Consensus 172 ~~~ee~~~~~~~i~~~~~~L~i~GlmTH~a~~~~~~~~~~~~-~~~~~~~l~~~~g~~~~~~~lS~G~s~~ 241 (269)
++++++..+++.+. . .+|++.||.+|.++.-++ ..+.+ ...+.+.+++ .|.++ .+++.|+...
T Consensus 166 i~~~~~~~~~~~~~-~-~~l~l~GlH~H~GS~~~~--~~~~~~~~~l~~~~~~-~g~~~--~~IdiGGGf~ 229 (420)
T PRK11165 166 IWHEDLPAALAVIQ-R-YGLKLVGIHMHIGSGVDY--GHLEQVCGAMVRQVIE-LGQDI--EAISAGGGLS 229 (420)
T ss_pred CCHHHHHHHHHHHH-h-CCCcEEEEEEeccCCCCh--HHHHHHHHHHHHHHHH-hCCCC--cEEEeCCCcc
Confidence 98888888877776 5 589999999999863221 22222 2333344444 47654 7788776543
No 43
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=99.28 E-value=4.4e-10 Score=106.71 Aligned_cols=185 Identities=22% Similarity=0.307 Sum_probs=142.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCC-CcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCC-Ccee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPD-RIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPD-DLEW 107 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~-~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~-~I~~ 107 (269)
|++.|+.|++.+++.. +. +.++.=.+|+.....+ +.+.+.| ..|-|+++-|...-.++ .++ .|
T Consensus 33 d~~~l~~~~~~~~~a~----------~~~~~~i~yAvKAn~~~~il~~l~~~g-~g~Dv~S~gEl~~al~aG~~~~~I-- 99 (394)
T COG0019 33 DEATLRRNARELKSAF----------PGSGAKVFYAVKANSNPAILRLLAEEG-SGFDVASLGELELALAAGFPPERI-- 99 (394)
T ss_pred cHHHHHHHHHHHHHHh----------ccCCceEEEEEcCCCCHHHHHHHHHhC-CCceecCHHHHHHHHHcCCChhhE--
Confidence 9999999999999988 32 4789999999887666 6666665 45778999999876666 333 35
Q ss_pred eeecCCCh-hcHHhHhhcCCCccEE-EeeCcHHHHHHHHHHHHhcCCCceeEEEEEe------------CCCCCCccCCC
Q 024293 108 HFIGNLQS-NKVKPLLAGVPNLAMV-ESVDNEKIAGRLNRMVETMGRKPLKVLVQVN------------TSGEESKSGVE 173 (269)
Q Consensus 108 ~~lG~~~~-~~~~~lv~~~~~~~l~-~~v~s~~~a~~L~~~a~~~~~~~i~V~lkID------------tG~em~R~G~~ 173 (269)
++-|+..+ +++..++ +.++. .++||.++++.|++.+... +.+|.|.|| ||..++|+|+.
T Consensus 100 ~f~g~~ks~~ei~~a~----e~gi~~i~vdS~~El~~l~~~a~~~---~~~v~lRInP~~~~~th~~~~tg~~~sKFG~~ 172 (394)
T COG0019 100 VFSGPAKSEEEIAFAL----ELGIKLINVDSEEELERLSAIAPGL---VARVSLRINPGVSAGTHEYIATGGKSSKFGIS 172 (394)
T ss_pred EECCCCCCHHHHHHHH----HcCCcEEEeCCHHHHHHHHHhcccc---CceEEEEECCCCCCccCccccCCccccccCCC
Confidence 67676654 6667777 35665 8999999999999998743 467787777 56677999999
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEeEeeCCCCC---CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCc
Q 024293 174 PSGCLELVKHVSQNCPNLEFCGLMTIGMPDY---TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS 239 (269)
Q Consensus 174 ~ee~~~~~~~i~~~~~~L~i~GlmTH~a~~~---~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s 239 (269)
++++.++++... +.+++++.||..|-.+.. ++-...++++.+++.++....|+.. .++++|+-
T Consensus 173 ~~~a~~~~~~~~-~~~~l~~~Glh~HiGSq~~d~~~~~~a~~~~~~~~~~~~~~~g~~l--~~inlGGG 238 (394)
T COG0019 173 PEEALDVLERAA-KLLGLELVGLHFHIGSQITDLDPFEEALAKVEELFGRLAEELGIQL--EWLNLGGG 238 (394)
T ss_pred HHHHHHHHHHHH-hcCCCceEEEEEeecCCCCCcHHHHHHHHHHHHHHHHHHHhhCCCc--eEEEecCC
Confidence 999888999888 889999999999998622 3445677788888888854358765 78887643
No 44
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=99.25 E-value=1.9e-09 Score=103.04 Aligned_cols=199 Identities=14% Similarity=0.111 Sum_probs=141.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCC---CeeeeccHHHHHHHHHc-CCCCce
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGH---RCFGENYVQEIVEKAAQ-LPDDLE 106 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~---~~fgva~i~EA~~lr~~-i~~~I~ 106 (269)
|++.|++|++.+++.+....+..+-. .++++.=.+|+.....+ +.+.+.|+ ..|=|++..|......+ ..++.
T Consensus 11 d~~~i~~~~~~l~~af~~~~~~~~~~-~~~~~~YAvKAN~~~~vl~~l~~~G~~~~~g~DvaS~~El~~al~~G~~~~~- 88 (409)
T cd06830 11 FPDILRHRIERLNAAFAKAIEEYGYK-GKYQGVYPIKVNQQREVVEEIVKAGKRYNIGLEAGSKPELLAALALLKTPDA- 88 (409)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCcC-CceEEEEEeecCCHHHHHHHHHHcCCccceeEEeCCHHHHHHHHhcCCCCCC-
Confidence 89999999999999885433222221 25678888999887665 88888995 57999999998866665 33332
Q ss_pred eeeecC-CChhcHHhHhhcCC-CccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCC-----------CCCCccCCC
Q 024293 107 WHFIGN-LQSNKVKPLLAGVP-NLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS-----------GEESKSGVE 173 (269)
Q Consensus 107 ~~~lG~-~~~~~~~~lv~~~~-~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG-----------~em~R~G~~ 173 (269)
..+-++ -..+.++.++...+ ..++..++||.+.++.|.+.+.+.++ +.+|.|.|+.+ +.-+|+|++
T Consensus 89 ii~~~g~K~~~~l~~a~~~~~~g~~v~i~vDs~~EL~~l~~~a~~~~~-~~~v~lRinp~~~~~~~~~~~~~~~sKFGi~ 167 (409)
T cd06830 89 LIICNGYKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGV-KPLLGVRIKLASKGSGKWQESGGDRSKFGLT 167 (409)
T ss_pred EEEECCcCCHHHHHHHHhcCcCCceEEEEECCHHHHHHHHHHHHHcCC-CceEEEEEccCCCCCcceeccCCCCCCCCCC
Confidence 123333 34455666552100 12467899999999999999988877 78999998754 334889999
Q ss_pred hhhHHHHHHHHHhcC-CCeEEEEeEeeCCCC--C-CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecC
Q 024293 174 PSGCLELVKHVSQNC-PNLEFCGLMTIGMPD--Y-TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMG 237 (269)
Q Consensus 174 ~ee~~~~~~~i~~~~-~~L~i~GlmTH~a~~--~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G 237 (269)
++++.++++.+. .+ +++++.||..|.++. + +.-...++.+.++++.+++ .|+++ ..+..|
T Consensus 168 ~~~~~~~~~~~~-~~~~~l~l~GlH~H~GSq~~~~~~~~~~~~~~~~~~~~~~~-~g~~l--~~iDiG 231 (409)
T cd06830 168 ASEILEVVEKLK-EAGMLDRLKLLHFHIGSQITDIRRIKSALREAARIYAELRK-LGANL--RYLDIG 231 (409)
T ss_pred HHHHHHHHHHHH-hcCcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH-hCCCC--cEEEcC
Confidence 999999999998 76 589999999999752 2 2334456677777777776 47654 666654
No 45
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=99.22 E-value=2.4e-09 Score=101.26 Aligned_cols=184 Identities=17% Similarity=0.196 Sum_probs=133.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCC-ceee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDD-LEWH 108 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~-I~~~ 108 (269)
|++.|++|++.+++.+ |.++++.=-+|+.....+ +.+.+.|+ .|=|++..|...-... .+.+ | .
T Consensus 9 d~~~l~~~~~~l~~a~----------~~~~~~~yAvKaN~~~~il~~l~~~G~-g~DvaS~~El~~al~~G~~~~~I--i 75 (379)
T cd06836 9 DLDGFRALVARLTAAF----------PAPVLHTFAVKANPLVPVLRLLAEAGA-GAEVASPGELELALAAGFPPERI--V 75 (379)
T ss_pred cHHHHHHHHHHHHHhc----------CCCcEEEEEEecCCCHHHHHHHHHcCC-cEEEcCHHHHHHHHHcCCChhhE--E
Confidence 8999999999999988 555778888899887665 77888886 6888999998866665 4443 5 5
Q ss_pred eecCCCh-hcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHh-cCCCceeEEEEEeC------------CCCCCccCCCh
Q 024293 109 FIGNLQS-NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVET-MGRKPLKVLVQVNT------------SGEESKSGVEP 174 (269)
Q Consensus 109 ~lG~~~~-~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~-~~~~~i~V~lkIDt------------G~em~R~G~~~ 174 (269)
+-|+..+ +++..++ ..++..++||++.++.|.+.+.+ .++ +.+|.|.|+. |...+|+|+.+
T Consensus 76 ~~gp~K~~~~L~~ai----~~gv~i~iDS~~El~~i~~~a~~~~~~-~~~v~lRvnp~~~~~~~~~~~~~~~~skFG~~~ 150 (379)
T cd06836 76 FDSPAKTRAELREAL----ELGVAINIDNFQELERIDALVAEFKEA-SSRIGLRVNPQVGAGKIGALSTATATSKFGVAL 150 (379)
T ss_pred EeCCCCCHHHHHHHH----HCCCEEEECCHHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCccccccCCCCCCCCcCc
Confidence 6688765 6666666 46777899999999999999876 565 7889999974 33458999999
Q ss_pred h--hHHHHHHHHHhcCCCeEEEEeEeeCCCCC-C--CcHHHHHHHHHHHHHHHHHcCC-CCCcceeecCC
Q 024293 175 S--GCLELVKHVSQNCPNLEFCGLMTIGMPDY-T--STPENFKTLAKCRSEVCKALGI-PEEQCDLSMGM 238 (269)
Q Consensus 175 e--e~~~~~~~i~~~~~~L~i~GlmTH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~-~~~~~~lS~G~ 238 (269)
+ ++..+++.+. ..++ +.||..|.++.. + .....++.+.++.+++.+.+|. ++ .++..|+
T Consensus 151 ~~~~~~~~~~~~~-~~~~--l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~--~~IDiGG 215 (379)
T cd06836 151 EDGARDEIIDAFA-RRPW--LNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRRQI--TRIDIGG 215 (379)
T ss_pred chhHHHHHHHHHh-cCCC--eEEEEEecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC--cEEEeCC
Confidence 7 5666666665 5454 579999997521 2 2233455556666677654453 33 6676553
No 46
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=99.19 E-value=7.2e-10 Score=98.86 Aligned_cols=182 Identities=18% Similarity=0.237 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCC-Cceee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPD-DLEWH 108 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~-~I~~~ 108 (269)
|++.+.++++.+.+... +.++++.--+|+.....+ +.+.+.|+ +|=|++..|....... +.+ .| .
T Consensus 1 d~~~~~~~~~~~~~~~~---------~~~~~i~yA~KaN~~~~vl~~l~~~g~-g~dv~S~~El~~a~~~g~~~~~I--i 68 (251)
T PF02784_consen 1 DLDRIIERIRAAWKAFL---------PYNVKIFYAVKANPNPAVLKILAEEGC-GFDVASPGELELALKAGFPPDRI--I 68 (251)
T ss_dssp EHHHHHHHHHHHHHHHT---------TT-EEEEEEGGGS--HHHHHHHHHTTC-EEEESSHHHHHHHHHTTTTGGGE--E
T ss_pred ChHHHHHHHHHHHHhcC---------CCCcEEEEEECcCCCHHHHHHHHHcCC-ceEEecccchHHHHhhhccccce--e
Confidence 56777777777666551 334899999999876665 78888884 7999999998866666 333 35 5
Q ss_pred eecCCCh-hcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCC------------CCCCccCCChh
Q 024293 109 FIGNLQS-NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEESKSGVEPS 175 (269)
Q Consensus 109 ~lG~~~~-~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG------------~em~R~G~~~e 175 (269)
+-|+..+ +.+..+++ ......++||+++++.|.+.+.. .+|.|.|+.+ +..+|+|++++
T Consensus 69 ~~gp~k~~~~l~~a~~---~~~~~i~vDs~~el~~l~~~~~~-----~~v~lRin~~~~~~~~~~~~~g~~~skFGi~~~ 140 (251)
T PF02784_consen 69 FTGPGKSDEELEEAIE---NGVATINVDSLEELERLAELAPE-----ARVGLRINPGIGAGSHPKISTGGKDSKFGIDIE 140 (251)
T ss_dssp EECSS--HHHHHHHHH---HTESEEEESSHHHHHHHHHHHCT-----HEEEEEBE-SESTTTSCHHCSSSHTSSSSBEGG
T ss_pred EecCcccHHHHHHHHh---CCceEEEeCCHHHHHHHhccCCC-----ceeeEEEeeccccccccccCCCCCCCcCCcChH
Confidence 6687664 56666662 12346789999999999998853 2677777644 33469999998
Q ss_pred h-HHHHHHHHHhcCCCeEEEEeEeeCCCC-C--CCcHHHHHHHHHHHHHHHHHcCCC-CCcceeecC
Q 024293 176 G-CLELVKHVSQNCPNLEFCGLMTIGMPD-Y--TSTPENFKTLAKCRSEVCKALGIP-EEQCDLSMG 237 (269)
Q Consensus 176 e-~~~~~~~i~~~~~~L~i~GlmTH~a~~-~--~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~lS~G 237 (269)
+ +.++++.+. ..+ +++.||..|.++. . +.-...+..+.++++++.+.+|++ + .++..|
T Consensus 141 ~~~~~~l~~~~-~~~-l~l~GlH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l--~~idiG 203 (251)
T PF02784_consen 141 EEAEEALERAK-ELG-LRLVGLHFHVGSQILDAEAFRQAIERLLDLAEELKEELGFEDL--EFIDIG 203 (251)
T ss_dssp GHHHHHHHHHH-HTT-EEEEEEEE-HCSSBSSCHHHHHHHHHHHHHHHHHHHHTTTTT---SEEEEE
T ss_pred HHHHHHHHhhc-cce-EEEEEeeeeeccCCcchHHHHHHHHHHHHHHhhhccccccccc--cEEEee
Confidence 8 999999998 888 9999999998752 1 233456677777778887557876 5 677655
No 47
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=99.05 E-value=1.4e-08 Score=96.56 Aligned_cols=178 Identities=13% Similarity=0.167 Sum_probs=127.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCC-Cceee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPD-DLEWH 108 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~-~I~~~ 108 (269)
|++.|++|++.+++.+ | ++++.=.+|+.....+ +.+.+.|+ .|=|++..|....... ..+ .| .
T Consensus 19 d~~~i~~~~~~l~~~l----------p-~~~~~YAvKaN~~~~il~~l~~~G~-g~DvaS~gEl~~al~~G~~~~~I--i 84 (394)
T cd06831 19 DLGKIVKKHSQWQTVM----------A-QIKPFYTVRCNSTPAVLEILAALGT-GFACSSKNEMALVQELGVSPENI--I 84 (394)
T ss_pred EHHHHHHHHHHHHHHC----------C-CCeEEeeeccCCCHHHHHHHHHcCC-CeEeCCHHHHHHHHhcCCCcCCE--E
Confidence 9999999999999998 5 6778888899887665 77888885 6889999999866665 343 35 5
Q ss_pred eecCCC-hhcHHhHhhcCCCccE-EEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCC----CC--CCccCCChhhHHHH
Q 024293 109 FIGNLQ-SNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS----GE--ESKSGVEPSGCLEL 180 (269)
Q Consensus 109 ~lG~~~-~~~~~~lv~~~~~~~l-~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG----~e--m~R~G~~~ee~~~~ 180 (269)
+-|+.. .+.++.++ ..++ +.++||++.++.|.+.+. ..+|.|.|+.+ .. .+|+|++++++.++
T Consensus 85 f~gp~K~~~~l~~a~----~~Gv~~i~vDS~~El~~i~~~~~-----~~~v~lRi~~~~~~~~~~~~~KFGi~~~~~~~~ 155 (394)
T cd06831 85 YTNPCKQASQIKYAA----KVGVNIMTCDNEIELKKIARNHP-----NAKLLLHIATEDNIGGEEMNMKFGTTLKNCRHL 155 (394)
T ss_pred EeCCCCCHHHHHHHH----HCCCCEEEECCHHHHHHHHHhCC-----CCcEEEEEeccCCCCCCccCCCCCCCHHHHHHH
Confidence 678875 46666666 3676 579999999999987652 34566666542 21 26999999999999
Q ss_pred HHHHHhcCCCeEEEEeEeeCCCCC-CC--cHHHHHHHHHHHHHHHHHcCCCCCcceeecC
Q 024293 181 VKHVSQNCPNLEFCGLMTIGMPDY-TS--TPENFKTLAKCRSEVCKALGIPEEQCDLSMG 237 (269)
Q Consensus 181 ~~~i~~~~~~L~i~GlmTH~a~~~-~~--~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G 237 (269)
++.++ .+ ++++.||..|.+..- +. -...+.....+++.+++ +|++. ..+..|
T Consensus 156 l~~~~-~~-~l~~~Gih~HiGS~~~~~~~~~~a~~~~~~~~~~~~~-~g~~l--~~ldiG 210 (394)
T cd06831 156 LECAK-EL-DVQIVGVKFHVSSSCKEYQTYVHALSDARCVFDMAEE-FGFKM--NMLDIG 210 (394)
T ss_pred HHHHH-HC-CCeEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCC--CEEEeC
Confidence 99987 75 799999999987522 21 11223333445555554 57764 667654
No 48
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=98.97 E-value=9.7e-08 Score=90.45 Aligned_cols=178 Identities=12% Similarity=0.056 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCceeeee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~l 110 (269)
|++.|++|++.+++.+. +.++++.=.+|+.....+ +.+.+.|+ .|-|+++.|...-..+.++.+ .+.
T Consensus 9 d~~~i~~~~~~l~~~~~---------~~~~~i~YAvKAN~~~~il~~l~~~g~-G~D~aS~gEl~~al~a~~~~~--i~~ 76 (380)
T TIGR01047 9 EEEKLRKNLEILEHVQQ---------QSGAKVLLALKGFAFWGVFPILREYLD-GCTASGLWEAKLAKEEFGKEI--HVY 76 (380)
T ss_pred cHHHHHHHHHHHHHHHh---------hcCCEEEEEEcccCChHHHHHHHHHCC-cccccCHHHHHHHHHHCCCcE--EEE
Confidence 89999999999988763 235778888999887665 77777764 577899999885444455455 344
Q ss_pred cCC-ChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCC------------CCCCccCCChhhH
Q 024293 111 GNL-QSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEESKSGVEPSGC 177 (269)
Q Consensus 111 G~~-~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG------------~em~R~G~~~ee~ 177 (269)
|+. ..++++.++ ..+...++||+++++.|.+.+.+.++ +.+|.|.||-+ +..+|+|++++++
T Consensus 77 ~~~k~~~el~~a~----~~g~~i~idS~~el~~l~~~a~~~~~-~~~i~lRinp~~~~~~~~~~~~~~~~sKFGi~~~~~ 151 (380)
T TIGR01047 77 SPAYSEEDVPEII----PLADHIIFNSLAQWARYRHLVEGKNS-AVKLGLRINPEYSEVGTDLYNPCGQFSRLGVQADHF 151 (380)
T ss_pred CCCCCHHHHHHHH----HcCCEEEECCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCcccccCCCCCCCCCCCHHHH
Confidence 665 456777777 35568899999999999999977676 78999999853 3358999999876
Q ss_pred HHHHHHHHhcCCCeEEEEeEeeCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCC
Q 024293 178 LELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (269)
Q Consensus 178 ~~~~~~i~~~~~~L~i~GlmTH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 238 (269)
.+.. .+++.||..|.++. ...+.|.+..+....+...++.. +..+..|+
T Consensus 152 ~~~~--------~~~i~GlH~HiGS~--~~~~~~~~~i~~~~~~~~~~~~~--~~~iDiGG 200 (380)
T TIGR01047 152 EESL--------LDGINGLHFHTLCE--KDADALERTLEVIEERFGEYLPQ--MDWVNFGG 200 (380)
T ss_pred hHhH--------hhcCcEEEEecCCC--CCHHHHHHHHHHHHHHHHHhhCC--CCEEEeCC
Confidence 5431 24678998899764 23344555555544444333323 35677653
No 49
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=98.94 E-value=3e-07 Score=92.00 Aligned_cols=200 Identities=15% Similarity=0.117 Sum_probs=141.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHH-HHHHHHhCC---CeeeeccHHHHHHHHHcCC-CCce
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSV-IRQVYEAGH---RCFGENYVQEIVEKAAQLP-DDLE 106 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~-i~~l~~~G~---~~fgva~i~EA~~lr~~i~-~~I~ 106 (269)
|.+.|++|++.+++.+.++.+..+-. .+.++.=-+|+..... ++.+.+.|. .+|=+++..|......... ++..
T Consensus 63 d~~iL~~~i~~l~~aF~~a~~~~~Y~-g~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEv~S~~EL~~Al~~g~~p~~~ 141 (624)
T TIGR01273 63 FPDILQHRIRSLNDAFANAIEEYQYA-GHYQGVYPIKVNQHRSVVEDIVAFGKGLNYGLEAGSKPELLAAMAYATKPGAP 141 (624)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhccC-CCeeEEEEeccCCcHHHHHHHHHcCCCCceEEEECCHHHHHHHHHcCCCCCCE
Confidence 99999999999999987655544432 3567888889976544 588888995 4577888888875555432 3432
Q ss_pred eeeecCCChhcHHhHhhcC-CCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEe-----------CCCCCCccCCCh
Q 024293 107 WHFIGNLQSNKVKPLLAGV-PNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVN-----------TSGEESKSGVEP 174 (269)
Q Consensus 107 ~~~lG~~~~~~~~~lv~~~-~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkID-----------tG~em~R~G~~~ 174 (269)
+..-|+-..+.++.++... -..+++.+|||++.++.|.+.+.+.++ +..|-|.|+ ||++.+|+|+++
T Consensus 142 Ii~NG~K~~e~I~~Al~~~~lG~~v~IvIDs~~EL~~I~~~a~~~~~-~~~IglRvnl~~~~~g~~~~tgg~~SKFGl~~ 220 (624)
T TIGR01273 142 IVCNGYKDREYIELALIGRKLGHNVFIVIEKLSELDLVIEEAKKLGV-KPKLGLRARLASKGSGKWASSGGEKSKFGLSA 220 (624)
T ss_pred EEeCCCCCHHHHHHHHHhhhcCCCeEEEECCHHHHHHHHHHHHhcCC-CceEEEEEecCCCCCCCcccCCCCCCCCCCCH
Confidence 2344754445566554100 014678999999999999999998887 677777775 455568999999
Q ss_pred hhHHHHHHHHHhcCCCeE-EEEeEeeCCCC--C-CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecC
Q 024293 175 SGCLELVKHVSQNCPNLE-FCGLMTIGMPD--Y-TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMG 237 (269)
Q Consensus 175 ee~~~~~~~i~~~~~~L~-i~GlmTH~a~~--~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G 237 (269)
+++.++++.++ ..+.+. +.||-.|.++. + +.-...++...+++.++++ .|.+. ..+..|
T Consensus 221 ~ei~~~i~~lk-~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~~~~~i~~eL~~-~G~~l--~~LDIG 283 (624)
T TIGR01273 221 TQILEVVRLLE-QNGLLDCLKLLHFHIGSQISNIDDVKKGVREAARFYCELRK-LGAKI--TYVDVG 283 (624)
T ss_pred HHHHHHHHHHH-hcCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEeC
Confidence 99999999998 887664 89999998752 2 2334556667777777776 57653 566544
No 50
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=98.93 E-value=2.1e-07 Score=87.73 Aligned_cols=179 Identities=16% Similarity=0.138 Sum_probs=124.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc--CCCCceee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ--LPDDLEWH 108 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~--i~~~I~~~ 108 (269)
|++.|+.|++.++. + +...++.--+|+.....+ +.+.+.|+ .|=|++..|....... .-++=.+.
T Consensus 18 d~~~l~~~~~~l~~-~----------~~~~~~~yAvKaN~~~~vl~~l~~~G~-g~dvaS~~El~~al~~~~G~~~~~Ii 85 (368)
T cd06840 18 DLETVRARARQVSA-L----------KAVDSLFYAIKANPHPDVLRTLEEAGL-GFECVSIGELDLVLKLFPDLDPRRVL 85 (368)
T ss_pred cHHHHHHHHHHHHh-C----------CCCCeEEEEeccCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHcccCCCcceEE
Confidence 99999999999875 4 334468888999887665 78888885 6999999999866553 22221225
Q ss_pred eecCCCh-hcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCC------------CCCCccCCChh
Q 024293 109 FIGNLQS-NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEESKSGVEPS 175 (269)
Q Consensus 109 ~lG~~~~-~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG------------~em~R~G~~~e 175 (269)
+-|+..+ +++..++ ..++..++||++.++.|.+.+. ..+|.|.|+.+ ...+|+|++++
T Consensus 86 f~gp~K~~~~l~~a~----~~gv~i~~Ds~~El~~i~~~~~-----~~~v~lRi~~~~~~~~~~~~~~~~~~skFG~~~~ 156 (368)
T cd06840 86 FTPNFAARSEYEQAL----ELGVNVTVDNLHPLREWPELFR-----GREVILRIDPGQGEGHHKHVRTGGPESKFGLDVD 156 (368)
T ss_pred EcCCCCCHHHHHHHH----HCCCEEEECCHHHHHHHHHhcc-----cCCEEEEECCCCCCCCCCceecCCCCCCCCCCHH
Confidence 6677764 6777777 3566779999999999887764 34667777653 33599999999
Q ss_pred hHHHHHHHHHhcCCCeEEEEeEeeCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCcceeecC
Q 024293 176 GCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMG 237 (269)
Q Consensus 176 e~~~~~~~i~~~~~~L~i~GlmTH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G 237 (269)
++.++++.+. .. ++++.|+..|.++.-. ..+.|.+..+...++.+. +.+ ..++..|
T Consensus 157 ~~~~~l~~~~-~~-~l~l~GlhfH~GS~~~-~~~~~~~~~~~~~~l~~~-~~~--~~~idiG 212 (368)
T cd06840 157 ELDEARDLAK-KA-GIIVIGLHAHSGSGVE-DTDHWARHGDYLASLARH-FPA--VRILNVG 212 (368)
T ss_pred HHHHHHHHHH-hC-CCcEEEEEEECCCCCC-CHHHHHHHHHHHHHHHHh-cCC--CCEEEec
Confidence 9999998887 65 7999999999975321 122344444444444442 222 3566654
No 51
>PRK05354 arginine decarboxylase; Provisional
Probab=98.91 E-value=4.7e-07 Score=90.75 Aligned_cols=200 Identities=17% Similarity=0.134 Sum_probs=138.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCC---CeeeeccHHHHHHHHHcCCC-Cce
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGH---RCFGENYVQEIVEKAAQLPD-DLE 106 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~---~~fgva~i~EA~~lr~~i~~-~I~ 106 (269)
|.+.|++|++.+++.+.++.+..+-. .+.+++=-+|+.....+ +.+.+.|. .+|=+++..|.........+ ...
T Consensus 70 ~~~~L~~ri~~L~~aF~~a~~~~~y~-g~~~~~YAiKaN~~~~Vl~~l~~~G~~~~~GlEv~S~~EL~~AL~~g~~~~~l 148 (634)
T PRK05354 70 FPDILQDRVRSLNAAFKKAIEEYGYQ-GDYRGVYPIKVNQQRRVVEEIVASGKPYNLGLEAGSKPELMAVLALAGDPGAL 148 (634)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhccC-CCceEEEEeccCChHHHHHHHHHcCCCCceeEEECCHHHHHHHHHcCCCCCcE
Confidence 99999999999999886655544432 24578888899776554 88889996 35778888888755554333 321
Q ss_pred eeeecCCChhcHHhHhhcCC-CccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEe-----------CCCCCCccCCCh
Q 024293 107 WHFIGNLQSNKVKPLLAGVP-NLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVN-----------TSGEESKSGVEP 174 (269)
Q Consensus 107 ~~~lG~~~~~~~~~lv~~~~-~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkID-----------tG~em~R~G~~~ 174 (269)
+..-|.-..+.++.++...+ ..+++.+|||++.++.|.+.+.+.++ +..|-|.|+ ||++-+|+|+++
T Consensus 149 Ii~NG~Kd~e~I~~Al~~~~lG~~v~ivIDs~~EL~~I~~~a~~~~~-~p~IglRi~~~~~~~g~~~~tgG~~SKFGl~~ 227 (634)
T PRK05354 149 IVCNGYKDREYIRLALIGRKLGHKVFIVIEKLSELELILEEAKELGV-KPRLGVRARLASQGSGKWQSSGGEKSKFGLSA 227 (634)
T ss_pred EEcCCCCCHHHHHHHHHhHhcCCCEEEEECCHHHHHHHHHHHHhcCC-CCeEEEEEecCCCCCCCcccCCCCCCCCCCCH
Confidence 22225434444555431000 13678999999999999999988887 667777664 455678999999
Q ss_pred hhHHHHHHHHHhcCCCe-EEEEeEeeCCCC--C-CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecC
Q 024293 175 SGCLELVKHVSQNCPNL-EFCGLMTIGMPD--Y-TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMG 237 (269)
Q Consensus 175 ee~~~~~~~i~~~~~~L-~i~GlmTH~a~~--~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G 237 (269)
+++.++++.++ +.+.+ ++.||-.|.++. + +.-...++...+++.++++ .|.+. ..+..|
T Consensus 228 ~ei~~~i~~lk-~~~~l~~L~GLHfHiGSQi~d~~~~~~al~e~~~~~~eL~~-~G~~l--~~LDIG 290 (634)
T PRK05354 228 TEVLEAVERLR-EAGLLDCLQLLHFHLGSQIANIRDIKTAVREAARFYVELRK-LGAPI--QYLDVG 290 (634)
T ss_pred HHHHHHHHHHH-hCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEeC
Confidence 99999999998 88877 599999998752 2 2233455666666667766 47653 556543
No 52
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=98.81 E-value=3.3e-07 Score=95.24 Aligned_cols=177 Identities=16% Similarity=0.193 Sum_probs=125.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc---CCC-Cce
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ---LPD-DLE 106 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~---i~~-~I~ 106 (269)
|++.|++|++.+++. ++..++.-.+|++....+ +.+.+.|+ +|=|++..|.....+. +.. .|
T Consensus 509 d~~~i~~n~~~l~~~-----------~~~~~i~yAvKaN~~~~vl~~l~~~G~-g~dvaS~~El~~al~~~~G~~~~~I- 575 (861)
T PRK08961 509 HLPTVRARARALAAL-----------AAVDQRFYAIKANPHPAILRTLEEEGF-GFECVSIGELRRVFELFPELSPERV- 575 (861)
T ss_pred EHHHHHHHHHHHHhc-----------CCCCcEEEEeecCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHhcCCCCCCeE-
Confidence 999999999999874 234578899999987666 78889998 8999999999866554 222 24
Q ss_pred eeeecCCC-hhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCC------------CCCCccCCC
Q 024293 107 WHFIGNLQ-SNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEESKSGVE 173 (269)
Q Consensus 107 ~~~lG~~~-~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG------------~em~R~G~~ 173 (269)
.+-|+.. .+.+..++ ..++..++||++.++.|.+.+.. .+|.|.|+.+ +..+|+|++
T Consensus 576 -i~~gp~K~~~~l~~A~----~~gv~i~vDS~~EL~~i~~~~~~-----~~v~lRinp~~~~~~~~~~~~~~~~sKFGi~ 645 (861)
T PRK08961 576 -LFTPNFAPRAEYEAAF----ALGVTVTLDNVEPLRNWPELFRG-----REVWLRIDPGHGDGHHEKVRTGGKESKFGLS 645 (861)
T ss_pred -EECCCCCCHHHHHHHH----HCCCEEEECCHHHHHHHHHhCCC-----CcEEEEECCCCCCCCCcccccCCCCCCCCCC
Confidence 4557765 46777777 36777899999999999887642 3456666643 335789999
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEeEeeCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCcceeecC
Q 024293 174 PSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMG 237 (269)
Q Consensus 174 ~ee~~~~~~~i~~~~~~L~i~GlmTH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G 237 (269)
++++.++++.+. . .++++.|+..|.++.-. ....|....+.+..+...+ .+ ..+++.|
T Consensus 646 ~~~~~~~~~~~~-~-~~l~l~GlH~H~GS~~~-~~~~~~~~~~~~~~l~~~~-~~--~~~iDiG 703 (861)
T PRK08961 646 QTRIDEFVDLAK-T-LGITVVGLHAHLGSGIE-TGEHWRRMADELASFARRF-PD--VRTIDLG 703 (861)
T ss_pred HHHHHHHHHHHH-h-CCCCEEEEEEecCCCCC-CHHHHHHHHHHHHHHHHhc-cC--CcEEEec
Confidence 999999999887 6 57999999999985221 1223444444444444432 22 3666655
No 53
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=98.69 E-value=2.2e-06 Score=80.08 Aligned_cols=144 Identities=13% Similarity=0.057 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCceeeee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~l 110 (269)
|++.|++|++.+++... .+++++.=.+|+.....+ +.+.+.|+ .|=|++..|...-+......+ .+.
T Consensus 7 d~~~i~~~~~~~~~~~~---------~~~~~i~YAvKaN~~~~il~~l~~~G~-g~DvaS~~El~~a~~~~~~~~--i~~ 74 (346)
T cd06829 7 DEAKLRRNLEILKRVQE---------RSGAKILLALKAFSMWSVFPLIREYLD-GTTASSLFEARLGREEFGGEV--HTY 74 (346)
T ss_pred eHHHHHHHHHHHHHHHh---------ccCCEEEEEEhhcCCHHHHHHHHHhCC-ccEecCHHHHHHHHHHCCCce--EEE
Confidence 88999999999998652 246788888999887665 78888885 688999999875544444343 344
Q ss_pred cCCCh-hcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCC------------CCCCccCCChhhH
Q 024293 111 GNLQS-NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEESKSGVEPSGC 177 (269)
Q Consensus 111 G~~~~-~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG------------~em~R~G~~~ee~ 177 (269)
|+..+ +++..++ ......++||++.++.|.+.+.. + +.+|.|.|+.+ ...+|+|+.++++
T Consensus 75 ~~~k~~~el~~a~----~~~~~~~~Ds~~EL~~l~~~~~~--~-~~~v~lRvnp~~~~~~~~~~~~~~~~sKFG~~~~~~ 147 (346)
T cd06829 75 SPAYRDDEIDEIL----RLADHIIFNSLSQLERFKDRAKA--A-GISVGLRINPEYSEVETDLYDPCAPGSRLGVTLDEL 147 (346)
T ss_pred CCCCCHHHHHHHH----HcCCEEEECCHHHHHHHHHHHhc--c-CCeEEEEECCCCCCCCCceecCCCCCCCCCCChHHh
Confidence 76553 4555666 24567899999999999998874 4 67888888753 2358999998765
Q ss_pred HHHHHHHHhcCCCeEEEEeEeeCCC
Q 024293 178 LELVKHVSQNCPNLEFCGLMTIGMP 202 (269)
Q Consensus 178 ~~~~~~i~~~~~~L~i~GlmTH~a~ 202 (269)
.. . . ++++.||-.|.++
T Consensus 148 ~~---~-~----~~~v~Glh~HvGS 164 (346)
T cd06829 148 EE---E-D----LDGIEGLHFHTLC 164 (346)
T ss_pred hh---h-h----hcCceEEEEccCc
Confidence 42 1 1 3678899989875
No 54
>PLN02439 arginine decarboxylase
Probab=98.68 E-value=7.4e-06 Score=81.20 Aligned_cols=195 Identities=17% Similarity=0.160 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHH-HHHHHHhCCC---eeeeccHHHHHHHHHcC-CC--Cc
Q 024293 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSV-IRQVYEAGHR---CFGENYVQEIVEKAAQL-PD--DL 105 (269)
Q Consensus 33 l~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~-i~~l~~~G~~---~fgva~i~EA~~lr~~i-~~--~I 105 (269)
.+.|++|++.+++.+..+....+- +...+..=-+|+..... ++.+.+.|.. ++=+++..|........ .. +.
T Consensus 6 ~d~l~~ri~~L~~aF~~ai~~~~y-~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEa~S~~EL~~al~~~~~~~~~~ 84 (559)
T PLN02439 6 PDVLKNRLESLQSAFDYAIQSQGY-NSHYQGVFPVKCNQDRFLVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGSPDA 84 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-CCCeEEEEEeecCCCHHHHHHHHHcCCccCceeEEeCHHHHHHHHHcCCCCCCCe
Confidence 467999999999988655433332 23456777789966544 5888888853 46678888877544443 22 22
Q ss_pred eeeee--cCCChhcHHhHhhcCC--CccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEe-----------CCCCCCcc
Q 024293 106 EWHFI--GNLQSNKVKPLLAGVP--NLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVN-----------TSGEESKS 170 (269)
Q Consensus 106 ~~~~l--G~~~~~~~~~lv~~~~--~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkID-----------tG~em~R~ 170 (269)
.++ |.-..+.++.++. .+ ..+++.++||++.++.|.+.+.+.++ +..|-|.|+ ||++-+|+
T Consensus 85 --ii~~NG~Kd~e~i~~Al~-~~~lG~~~~IviDs~~EL~~I~~~a~~l~~-~p~IglRi~~~~~~~~~~~~tgg~~sKF 160 (559)
T PLN02439 85 --FLICNGYKDAEYVSLALL-ARKLGLNTVIVLEQEEELDLVIEASQRLGV-RPVIGVRAKLRTKHSGHFGSTSGEKGKF 160 (559)
T ss_pred --EEECCCCCCHHHHHHHHH-hhhCCCCeEEEECCHHHHHHHHHHHHHcCC-CceEEEEEecCCCCCCCccccCCCCCCC
Confidence 133 3333333444321 01 14567899999999999999988876 556666653 56667999
Q ss_pred CCChhhHHHHHHHHHhcCCCeE-EEEeEeeCCCC--C-CCcHHHHHHHHHHHHHHHHHcCCCCCcceeec
Q 024293 171 GVEPSGCLELVKHVSQNCPNLE-FCGLMTIGMPD--Y-TSTPENFKTLAKCRSEVCKALGIPEEQCDLSM 236 (269)
Q Consensus 171 G~~~ee~~~~~~~i~~~~~~L~-i~GlmTH~a~~--~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~ 236 (269)
|++++++.++++.++ ..+.+. +.||-.|.++. + +.-...++...+++.++++ .|.+. ..+..
T Consensus 161 Gl~~~ei~~~i~~lk-~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~e~~~l~~eL~~-~G~~l--~~lDI 226 (559)
T PLN02439 161 GLTATEIVRVVRKLR-KEGMLDCLQLLHFHIGSQIPSTSLLKDGVSEAAQIYCELVR-LGAPM--RVIDI 226 (559)
T ss_pred CCCHHHHHHHHHHHH-hCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--cEEEe
Confidence 999999999999998 888887 99999898752 2 2334455666666777776 47653 55554
No 55
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=98.17 E-value=0.00019 Score=67.83 Aligned_cols=180 Identities=14% Similarity=0.136 Sum_probs=126.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCC-ceee
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDD-LEWH 108 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~-I~~~ 108 (269)
.|+.+|..++...++.+ ++++..-.||......+ +.|.+.|+-.+++|.-+..+.+.-...+. | .
T Consensus 61 ~Dl~~I~Rkl~~w~~~L-----------prV~PfYAVKCN~dp~vl~~La~lG~gfdcaSk~E~~lvl~~gv~P~ri--I 127 (448)
T KOG0622|consen 61 ADLGAIERKLEAWKKAL-----------PRVRPFYAVKCNSDPKVLRLLASLGCGFDCASKNELDLVLSLGVSPERI--I 127 (448)
T ss_pred ecHHHHHHHHHHHHHhc-----------ccCCCceeEEeCCCHHHHHHHHHcCccceecChHHHHHHHhcCCChHHe--E
Confidence 39999999999999998 36788888899877665 77788999988888888877555444443 5 3
Q ss_pred eecCCC-hhcHHhHhhcCCCcc-EEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCC------CCccCCChhhHHHH
Q 024293 109 FIGNLQ-SNKVKPLLAGVPNLA-MVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------ESKSGVEPSGCLEL 180 (269)
Q Consensus 109 ~lG~~~-~~~~~~lv~~~~~~~-l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~e------m~R~G~~~ee~~~~ 180 (269)
+.+|.. ...++.++ ..+ .+.++|+...+..+.+ .+ . ..++.|.|.|... -.++|.+.+++..+
T Consensus 128 yanpcK~~s~IkyAa----~~gV~~~tfDne~el~kv~~---~h-P-~a~llLrIatdds~a~~~l~~KFG~~~~~~~~l 198 (448)
T KOG0622|consen 128 YANPCKQVSQIKYAA----KHGVSVMTFDNEEELEKVAK---SH-P-NANLLLRIATDDSTATCRLNLKFGCSLDNCRHL 198 (448)
T ss_pred ecCCCccHHHHHHHH----HcCCeEEeecCHHHHHHHHH---hC-C-CceEEEEEccCCCcccccccCccCCCHHHHHHH
Confidence 555554 45666666 233 4467888876555543 33 3 5778888875432 45788899999999
Q ss_pred HHHHHhcCCCeEEEEeEeeCCC--CC-CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecC
Q 024293 181 VKHVSQNCPNLEFCGLMTIGMP--DY-TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMG 237 (269)
Q Consensus 181 ~~~i~~~~~~L~i~GlmTH~a~--~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G 237 (269)
++..+ .+ +|++.|+.-|.+. .+ +.........+.+|+.... +|++- ..+-.|
T Consensus 199 Ld~ak-~l-~lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~g~e-~Gf~m--~~LdiG 253 (448)
T KOG0622|consen 199 LDMAK-EL-ELNVVGVSFHVGSGCTDLQAYRDAISDARNVFDMGAE-LGFEM--DILDIG 253 (448)
T ss_pred HHHHH-Hc-CceEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHh-cCceE--EEeecC
Confidence 99988 77 7999999889874 32 2223455566677776664 68763 444433
No 56
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=86.79 E-value=14 Score=31.93 Aligned_cols=170 Identities=13% Similarity=0.130 Sum_probs=91.3
Q ss_pred HHHHHHHHhCCCeeeec------------cHHHHHHHHHcCCCCceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHH
Q 024293 73 SVIRQVYEAGHRCFGEN------------YVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIA 140 (269)
Q Consensus 73 ~~i~~l~~~G~~~fgva------------~i~EA~~lr~~i~~~I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a 140 (269)
..++.+.++|++++-+- -.+....+|+....++-.|++-.-+...++.+++. .-.-++.=+++.+..
T Consensus 16 ~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~-g~~~i~~H~E~~~~~ 94 (201)
T PF00834_consen 16 EEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEA-GADYITFHAEATEDP 94 (201)
T ss_dssp HHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHH-T-SEEEEEGGGTTTH
T ss_pred HHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhc-CCCEEEEcccchhCH
Confidence 45677777788764321 13334444554334444587765555666666632 112244445666666
Q ss_pred HHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeEEEEeEeeCC-CC-CCCcHHHHHHHHHHH
Q 024293 141 GRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM-PD-YTSTPENFKTLAKCR 218 (269)
Q Consensus 141 ~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~i~GlmTH~a-~~-~~~~~~~~~~~~~~~ 218 (269)
..+-+..++.|. +.-+ -++-+ -+.+.+. .+ ++.+...-+||--+ .+ ..+....+++..++.
T Consensus 95 ~~~i~~ik~~g~-k~Gi--alnP~-------T~~~~~~----~~---l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~ 157 (201)
T PF00834_consen 95 KETIKYIKEAGI-KAGI--ALNPE-------TPVEELE----PY---LDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELR 157 (201)
T ss_dssp HHHHHHHHHTTS-EEEE--EE-TT-------S-GGGGT----TT---GCCSSEEEEESS-TTTSSB--HGGHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CEEE--EEECC-------CCchHHH----HH---hhhcCEEEEEEecCCCCcccccHHHHHHHHHHH
Confidence 666667777776 4444 45554 1223322 22 24566777888765 22 235556778888777
Q ss_pred HHHHHHcCCCCCcceeecCCc-cCHHHHHHcCCCeeeeChhhhCC
Q 024293 219 SEVCKALGIPEEQCDLSMGMS-GDFELAIEMGSTNVRIGSTIFGA 262 (269)
Q Consensus 219 ~~l~~~~g~~~~~~~lS~G~s-~~~~~~~~~~~~~VR~G~alyG~ 262 (269)
+.+.+ .|... ...+-.|-+ .+.+...+.|.|.+=.|+++|+.
T Consensus 158 ~~~~~-~~~~~-~I~vDGGI~~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 158 KLIPE-NGLDF-EIEVDGGINEENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp HHHHH-HTCGS-EEEEESSESTTTHHHHHHHT--EEEESHHHHTS
T ss_pred HHHHh-cCCce-EEEEECCCCHHHHHHHHHcCCCEEEECHHHhCC
Confidence 76665 36432 012234444 34555567899999999999974
No 57
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=73.92 E-value=63 Score=28.53 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=45.9
Q ss_pred CeEEEEeEeeCC-CC-CCCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCcc-CHHHHHHcCCCeeeeChhhhCCCCC
Q 024293 190 NLEFCGLMTIGM-PD-YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSG-DFELAIEMGSTNVRIGSTIFGAREY 265 (269)
Q Consensus 190 ~L~i~GlmTH~a-~~-~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~-~~~~~~~~~~~~VR~G~alyG~~p~ 265 (269)
.+.+.=+||=-| .+ -.+....+++++++.+.+.++ | +. ...+-.|.+. +.+...+.|.|.+=.|+++|+...|
T Consensus 131 ~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~-~-~~-~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~~d~ 206 (220)
T COG0036 131 DVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDER-L-DI-LIEVDGGINLETIKQLAAAGADVFVAGSALFGADDY 206 (220)
T ss_pred hCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhccc-C-Ce-EEEEeCCcCHHHHHHHHHcCCCEEEEEEEEeCCccH
Confidence 344566787665 33 356777888888777666542 3 21 1223344442 3455556899999999999997543
No 58
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=67.41 E-value=7.6 Score=36.41 Aligned_cols=89 Identities=18% Similarity=0.151 Sum_probs=55.0
Q ss_pred CCccCCC--h--hhHHHHHHHHHhcCCCeEEEEeEeeCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC----Cccee-ecC
Q 024293 167 ESKSGVE--P--SGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPE----EQCDL-SMG 237 (269)
Q Consensus 167 m~R~G~~--~--ee~~~~~~~i~~~~~~L~i~GlmTH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~----~~~~l-S~G 237 (269)
|.++||+ | +....-..+|. .+-+.-+.+|||=.-..++.....|.+|.++.+...+ +|+.. +...+ .+|
T Consensus 1 m~~~GfSifp~~~~~~~~~~Yi~-~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Ank-lg~~vivDvnPsil~~l~ 78 (360)
T COG3589 1 MRMLGFSIFPNRSPKEKDIAYID-RMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEANK-LGLRVIVDVNPSILKELN 78 (360)
T ss_pred CcceeEEeccCCCcchhHHHHHH-HHHHcCccceeeecccCCchHHHHHHHHHHHHHHHHh-cCcEEEEEcCHHHHhhcC
Confidence 5678875 3 33344566676 6666778999876654333334578889998888776 68641 11333 356
Q ss_pred CccCHH-HHHHcCCCeeeeCh
Q 024293 238 MSGDFE-LAIEMGSTNVRIGS 257 (269)
Q Consensus 238 ~s~~~~-~~~~~~~~~VR~G~ 257 (269)
.|.+.. ...+.|.+.+|.-.
T Consensus 79 ~S~~~l~~f~e~G~~glRlD~ 99 (360)
T COG3589 79 ISLDNLSRFQELGVDGLRLDY 99 (360)
T ss_pred CChHHHHHHHHhhhhheeecc
Confidence 666533 23456899999753
No 59
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=67.08 E-value=89 Score=31.90 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc-CChHHHHHHHHhCCCee-ee---------ccHHHHHHHHHc
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT-KPVSVIRQVYEAGHRCF-GE---------NYVQEIVEKAAQ 100 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa-hg~~~i~~l~~~G~~~f-gv---------a~i~EA~~lr~~ 100 (269)
.+++++.|++.+....+..+..-.+. .+.++..+==+ .+.-.+..|.+.|+..| +| ++|.|..+..+.
T Consensus 102 ~lERYaaqI~F~~~fs~s~~~rF~~q-R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~ 180 (637)
T TIGR03693 102 LLDRYAAQIEFIEADADSGALKFELS-RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEE 180 (637)
T ss_pred HHHHHHHHHHHHHHhccCchhhhhhh-hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHH
Confidence 56888999998888765433222222 11222221111 22333467789999998 66 345577666555
Q ss_pred CCCCceeeeecCCChhcHHhHhhcCCCccEEEeeCc---HHHHHHHHHHHHhcCC
Q 024293 101 LPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDN---EKIAGRLNRMVETMGR 152 (269)
Q Consensus 101 i~~~I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s---~~~a~~L~~~a~~~~~ 152 (269)
..+.+.+..+.....+.+..++ +.+|++..+.+ .+.+.+++++|.+.|+
T Consensus 181 ~n~~v~v~~i~~~~~~dl~ev~---~~~DiVi~vsDdy~~~~Lr~lN~acvkegk 232 (637)
T TIGR03693 181 TDDALLVQEIDFAEDQHLHEAF---EPADWVLYVSDNGDIDDLHALHAFCKEEGK 232 (637)
T ss_pred hCCCCceEeccCCcchhHHHhh---cCCcEEEEECCCCChHHHHHHHHHHHHcCC
Confidence 5555544555655567777777 46887766654 5678899999998876
No 60
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=63.25 E-value=34 Score=28.62 Aligned_cols=36 Identities=42% Similarity=0.593 Sum_probs=30.3
Q ss_pred eEEEEEeCCCCCCccCCCh--hhHHHHHHHHHhcCCCeEEEEe
Q 024293 156 KVLVQVNTSGEESKSGVEP--SGCLELVKHVSQNCPNLEFCGL 196 (269)
Q Consensus 156 ~V~lkIDtG~em~R~G~~~--ee~~~~~~~i~~~~~~L~i~Gl 196 (269)
+|+|=|||. +++||.| +.+..+++... . .++++-|+
T Consensus 26 kVlLIVNtA---SkCGfTpQYegLe~Ly~ky~-~-~Gf~VLgF 63 (162)
T COG0386 26 KVLLIVNTA---SKCGFTPQYEGLEALYKKYK-D-KGFEVLGF 63 (162)
T ss_pred cEEEEEEcc---cccCCcHhHHHHHHHHHHHh-h-CCcEEEec
Confidence 488889997 9999998 78888888875 4 68888887
No 61
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=57.83 E-value=1.3e+02 Score=26.29 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=41.3
Q ss_pred CeEEEEeEeeCC-CCC-CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccC-HHHHHHcCCCeeeeChhhhCCCCC
Q 024293 190 NLEFCGLMTIGM-PDY-TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGD-FELAIEMGSTNVRIGSTIFGAREY 265 (269)
Q Consensus 190 ~L~i~GlmTH~a-~~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~-~~~~~~~~~~~VR~G~alyG~~p~ 265 (269)
++.+.=+||--+ .+. .+..++..+.. .|+++|+ +. -..+-.|-++. ...+.+.|.|++=.|+++||...+
T Consensus 134 ~~D~vLvMtVePGFGGQkFme~mm~KV~----~lR~kyp-~l-~ievDGGv~~~ti~~~a~AGAN~iVaGsavf~a~d~ 206 (224)
T KOG3111|consen 134 HVDMVLVMTVEPGFGGQKFMEDMMPKVE----WLREKYP-NL-DIEVDGGVGPSTIDKAAEAGANMIVAGSAVFGAADP 206 (224)
T ss_pred cccEEEEEEecCCCchhhhHHHHHHHHH----HHHHhCC-Cc-eEEecCCcCcchHHHHHHcCCCEEEecceeecCCCH
Confidence 566777898766 332 34444555444 4666542 11 02234444433 333457899999999999996543
No 62
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=54.35 E-value=1.3e+02 Score=25.07 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=38.1
Q ss_pred cEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeEEEEe
Q 024293 129 AMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGL 196 (269)
Q Consensus 129 ~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~i~Gl 196 (269)
.....++..+.+..|=+.+...+. +|.+ .| -.++.+..+.+.+.+.+|++++.|.
T Consensus 24 ~~~~r~~g~dl~~~ll~~~~~~~~---~v~l---lG-------~~~~~~~~~~~~l~~~yp~l~i~g~ 78 (171)
T cd06533 24 PLPERVTGSDLMPALLELAAQKGL---RVFL---LG-------AKPEVLEKAAERLRARYPGLKIVGY 78 (171)
T ss_pred CCCcccCcHHHHHHHHHHHHHcCC---eEEE---EC-------CCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 345667788888777777766544 4443 24 4667778888778657899999884
No 63
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=53.26 E-value=2.6e+02 Score=28.36 Aligned_cols=197 Identities=17% Similarity=0.141 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChH-HHHHHHHhC-CCeeee---ccHHHHHHHHHc-CCCCc
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVS-VIRQVYEAG-HRCFGE---NYVQEIVEKAAQ-LPDDL 105 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~-~i~~l~~~G-~~~fgv---a~i~EA~~lr~~-i~~~I 105 (269)
=.+-|.+.++.|....+++.+..+=. .+-..+=-+|-.--. .|..+...| -..||. |+.+=...|.-+ .+..+
T Consensus 86 Fp~IL~~Rl~~ln~aF~~Ai~ey~Y~-g~Y~~VyPIKvNQ~r~vVe~Lv~~g~~~~~GLEAGSK~ELm~vLA~~~~~~~~ 164 (652)
T COG1166 86 FPQILQHRLRSLNAAFARAIEEYGYP-GGYFAVYPIKVNQHRRVVESLVASGKGYPLGLEAGSKAELMAVLAHAGNPGSL 164 (652)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCC-CceeEEEEeeecchHHHHHHHHhccCCCCCcccCCCHHHHHHHHHhcCCCCCe
Confidence 34567888888888888777777653 333444445873222 234555443 122443 233222223222 12222
Q ss_pred eeeeecCCChhcHHhHhhcCC--CccEEEeeCcHHHHHHHHHHHHhcCCC-ceeEEEEEe---------CCCCCCccCCC
Q 024293 106 EWHFIGNLQSNKVKPLLAGVP--NLAMVESVDNEKIAGRLNRMVETMGRK-PLKVLVQVN---------TSGEESKSGVE 173 (269)
Q Consensus 106 ~~~~lG~~~~~~~~~lv~~~~--~~~l~~~v~s~~~a~~L~~~a~~~~~~-~i~V~lkID---------tG~em~R~G~~ 173 (269)
+ .--|+-+.+.++.+. +.+ -+.++.+|.-+..++.+-+.|++.|.+ .+.|-+++- +|++-.++|.+
T Consensus 165 I-vCNGyKDrEyI~lAl-ig~kLGh~v~ivIEklsEl~~VleeA~~lgvkP~lGvR~RL~sqGsGkW~~SgG~ksKFGLs 242 (652)
T COG1166 165 I-VCNGYKDREYIRLAL-IGEKLGHKVYIVIEKLSELDLVLEEAKQLGVKPRLGVRARLASQGSGKWQSSGGEKSKFGLS 242 (652)
T ss_pred E-EecCcccHHHHHHHH-HHHHhCCceEEEEechHHHHHHHHHHHHcCCCCcceeEEEEecccccccccccCchhccCCC
Confidence 1 233876666666532 101 166889999999999988899888763 345555553 77788999999
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEe-EeeCCCCCC-----CcHHHHHHHHHHHHHHHHHcCCCCCcceeecC
Q 024293 174 PSGCLELVKHVSQNCPNLEFCGL-MTIGMPDYT-----STPENFKTLAKCRSEVCKALGIPEEQCDLSMG 237 (269)
Q Consensus 174 ~ee~~~~~~~i~~~~~~L~i~Gl-mTH~a~~~~-----~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G 237 (269)
..++..+++.++ ...- ++.+ |-||--+.. .....++.-.+++-+|.+ +|.+. .++..|
T Consensus 243 a~qvL~~v~~Lr-e~~~--Ld~l~llHFHlGSQisnI~~ik~~~rEA~r~YvEL~k-lGa~i--~~~dVG 306 (652)
T COG1166 243 ATQVLQVVERLR-EANL--LDSLQLLHFHLGSQISNIRDIKTGVREAARFYVELRK-LGANI--KYFDVG 306 (652)
T ss_pred HHHHHHHHHHHH-hcch--HHhhHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHH-cCCCc--eEEecc
Confidence 999999999987 5332 3444 556643221 223344444455556766 68764 666543
No 64
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=51.03 E-value=37 Score=28.75 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=33.6
Q ss_pred eeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeEEEEe
Q 024293 133 SVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGL 196 (269)
Q Consensus 133 ~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~i~Gl 196 (269)
-+.-.+.+..|-+.+...+. +|.+ .| -.|+.+..+.+.+.+.+|++++.|.
T Consensus 30 Rv~G~dl~~~l~~~~~~~~~---~vfl---lG-------~~~~v~~~~~~~l~~~yP~l~i~g~ 80 (177)
T TIGR00696 30 RVAGPDLMEELCQRAGKEKL---PIFL---YG-------GKPDVLQQLKVKLIKEYPKLKIVGA 80 (177)
T ss_pred ccChHHHHHHHHHHHHHcCC---eEEE---EC-------CCHHHHHHHHHHHHHHCCCCEEEEE
Confidence 34556667666666665543 4543 24 4666777778888657899999885
No 65
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=48.05 E-value=1.1e+02 Score=26.15 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=48.0
Q ss_pred CChHHHHHHHHhCCCee------------------------eeccHHHHHHHHHcCCCCceeeee-cCCChhcHHhHhhc
Q 024293 70 KPVSVIRQVYEAGHRCF------------------------GENYVQEIVEKAAQLPDDLEWHFI-GNLQSNKVKPLLAG 124 (269)
Q Consensus 70 hg~~~i~~l~~~G~~~f------------------------gva~i~EA~~lr~~i~~~I~~~~l-G~~~~~~~~~lv~~ 124 (269)
.|...++.|..+|+..+ |..+.+.+.+....+.+.+.+..+ ..+.++.+..++
T Consensus 32 lGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~-- 109 (202)
T TIGR02356 32 LGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTAENLELLI-- 109 (202)
T ss_pred HHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcCCHHHHHHHH--
Confidence 55555667777777432 344555555444444444433332 334444555555
Q ss_pred CCCccEE-EeeCcHHHHHHHHHHHHhcCC
Q 024293 125 VPNLAMV-ESVDNEKIAGRLNRMVETMGR 152 (269)
Q Consensus 125 ~~~~~l~-~~v~s~~~a~~L~~~a~~~~~ 152 (269)
+.+|++ .++|+.+.-..+++.+.+.++
T Consensus 110 -~~~D~Vi~~~d~~~~r~~l~~~~~~~~i 137 (202)
T TIGR02356 110 -NNVDLVLDCTDNFATRYLINDACVALGT 137 (202)
T ss_pred -hCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 457755 467888888889999998876
No 66
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=47.33 E-value=2e+02 Score=25.42 Aligned_cols=136 Identities=9% Similarity=0.046 Sum_probs=71.5
Q ss_pred eeecCCChhcHHhHhhcCCCccE-EEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHh
Q 024293 108 HFIGNLQSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQ 186 (269)
Q Consensus 108 ~~lG~~~~~~~~~lv~~~~~~~l-~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~ 186 (269)
|++-.-+.+.++.+++. ..++ +.=+++.....+.-+..++.|. ++++=|-++-+ -+.+.+..++..
T Consensus 74 HLMv~~P~~~i~~~~~a--Gad~It~H~Ea~~~~~~~l~~Ik~~g~-~~kaGlalnP~-------Tp~~~i~~~l~~--- 140 (228)
T PRK08091 74 HLMVRDQFEVAKACVAA--GADIVTLQVEQTHDLALTIEWLAKQKT-TVLIGLCLCPE-------TPISLLEPYLDQ--- 140 (228)
T ss_pred EeccCCHHHHHHHHHHh--CCCEEEEcccCcccHHHHHHHHHHCCC-CceEEEEECCC-------CCHHHHHHHHhh---
Confidence 65544344455555531 1332 2222322223233334445554 44555566655 233444433333
Q ss_pred cCCCeEEEEeEeeCC-CC-CCCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCc-cCHHHHHHcCCCeeeeChhhhCC
Q 024293 187 NCPNLEFCGLMTIGM-PD-YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS-GDFELAIEMGSTNVRIGSTIFGA 262 (269)
Q Consensus 187 ~~~~L~i~GlmTH~a-~~-~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s-~~~~~~~~~~~~~VR~G~alyG~ 262 (269)
+...=+||.-+ .+ ..+....+++..++.+.+.+ .|++. ...+-.|-+ .+.+...+.|.|.+=.|+++|+.
T Consensus 141 ----vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~-~~~~~-~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF~~ 213 (228)
T PRK08091 141 ----IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGN-RRVEK-LISIDGSMTLELASYLKQHQIDWVVSGSALFSQ 213 (228)
T ss_pred ----cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHh-cCCCc-eEEEECCCCHHHHHHHHHCCCCEEEEChhhhCC
Confidence 44555788776 33 34666678888877776655 35542 012233433 23444467899999999999984
No 67
>PRK08005 epimerase; Validated
Probab=40.83 E-value=2.5e+02 Score=24.51 Aligned_cols=141 Identities=14% Similarity=0.118 Sum_probs=71.7
Q ss_pred HHHcCCCCceeeeecCCChhcHHhHhhcCCCccE-EEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChh
Q 024293 97 KAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPS 175 (269)
Q Consensus 97 lr~~i~~~I~~~~lG~~~~~~~~~lv~~~~~~~l-~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~e 175 (269)
+|+....++-.|++-.-+.+.++.+++. ..++ +.=+.+.....++-+..++.|. +..+- ++-+ -+.+
T Consensus 53 l~~~t~~~~DvHLMv~~P~~~i~~~~~~--gad~It~H~Ea~~~~~~~l~~Ik~~G~-k~GlA--lnP~-------Tp~~ 120 (210)
T PRK08005 53 VAQQTRHPLSFHLMVSSPQRWLPWLAAI--RPGWIFIHAESVQNPSEILADIRAIGA-KAGLA--LNPA-------TPLL 120 (210)
T ss_pred HHhcCCCCeEEEeccCCHHHHHHHHHHh--CCCEEEEcccCccCHHHHHHHHHHcCC-cEEEE--ECCC-------CCHH
Confidence 3443233444477655455556666531 1332 2223322233444455666676 44444 4443 1224
Q ss_pred hHHHHHHHHHhcCCCeEEEEeEeeCC-CC-CCCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCc-cCHHHHHHcCCCe
Q 024293 176 GCLELVKHVSQNCPNLEFCGLMTIGM-PD-YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS-GDFELAIEMGSTN 252 (269)
Q Consensus 176 e~~~~~~~i~~~~~~L~i~GlmTH~a-~~-~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s-~~~~~~~~~~~~~ 252 (269)
.+..++. .+...=+||.-+ .+ ..+....+++..++.+...+ .. ..+-.|-+ .+.+...+.|.|.
T Consensus 121 ~i~~~l~-------~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~---~~---I~VDGGI~~~~i~~l~~aGad~ 187 (210)
T PRK08005 121 PYRYLAL-------QLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPA---AE---CWADGGITLRAARLLAAAGAQH 187 (210)
T ss_pred HHHHHHH-------hcCEEEEEEecCCCccceecHHHHHHHHHHHHhccc---CC---EEEECCCCHHHHHHHHHCCCCE
Confidence 4443333 334455788766 33 34566677777765432211 11 22334444 2344456789999
Q ss_pred eeeChhhhCC
Q 024293 253 VRIGSTIFGA 262 (269)
Q Consensus 253 VR~G~alyG~ 262 (269)
+=.|++||+.
T Consensus 188 ~V~GsaiF~~ 197 (210)
T PRK08005 188 LVIGRALFTT 197 (210)
T ss_pred EEEChHhhCC
Confidence 9999999974
No 68
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=40.40 E-value=1.5e+02 Score=26.19 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=48.5
Q ss_pred CChHHHHHHHHhCCCee------------------------eeccHHHHHHHHHcCCCCceeeee-cCCChhcHHhHhhc
Q 024293 70 KPVSVIRQVYEAGHRCF------------------------GENYVQEIVEKAAQLPDDLEWHFI-GNLQSNKVKPLLAG 124 (269)
Q Consensus 70 hg~~~i~~l~~~G~~~f------------------------gva~i~EA~~lr~~i~~~I~~~~l-G~~~~~~~~~lv~~ 124 (269)
.|...+..|..+|+..| |-.+.+-+.+....+.+.+....+ ..+..+.+..++
T Consensus 35 lGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~-- 112 (240)
T TIGR02355 35 LGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKLDDAELAALI-- 112 (240)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh--
Confidence 45555566677776443 334455554443444443322222 444555566666
Q ss_pred CCCccEEE-eeCcHHHHHHHHHHHHhcCC
Q 024293 125 VPNLAMVE-SVDNEKIAGRLNRMVETMGR 152 (269)
Q Consensus 125 ~~~~~l~~-~v~s~~~a~~L~~~a~~~~~ 152 (269)
..+|++. ..|+.+.-..|++.+.+.++
T Consensus 113 -~~~DlVvd~~D~~~~r~~ln~~~~~~~i 140 (240)
T TIGR02355 113 -AEHDIVVDCTDNVEVRNQLNRQCFAAKV 140 (240)
T ss_pred -hcCCEEEEcCCCHHHHHHHHHHHHHcCC
Confidence 4688665 67999888889999998876
No 69
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=39.89 E-value=62 Score=30.51 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=28.8
Q ss_pred ceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeEEEEeEeeCCC
Q 024293 154 PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP 202 (269)
Q Consensus 154 ~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~i~GlmTH~a~ 202 (269)
...+|+..... ..+..++++.+. ..|.+++..+|-|.|-
T Consensus 130 dHr~HlRcEvs---------~~~~l~~~e~~~-~~p~v~LiSlMDH~PG 168 (377)
T COG3454 130 DHRLHLRCEVS---------HPATLPLFEDLM-DHPRVKLISLMDHTPG 168 (377)
T ss_pred ccceeeeeecC---------ChhHHHHHHHHh-cCCCeeEEEecCCCCC
Confidence 34556555543 356677778887 8899999999999974
No 70
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=38.70 E-value=1.5e+02 Score=26.21 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=49.0
Q ss_pred CChHHHHHHHHhCCCee------------------------eeccHHHHHHHHHcCCCCceee-eecCCChhcHHhHhhc
Q 024293 70 KPVSVIRQVYEAGHRCF------------------------GENYVQEIVEKAAQLPDDLEWH-FIGNLQSNKVKPLLAG 124 (269)
Q Consensus 70 hg~~~i~~l~~~G~~~f------------------------gva~i~EA~~lr~~i~~~I~~~-~lG~~~~~~~~~lv~~ 124 (269)
.|...+..|..+|+..| |-.+.+.+.+....+.+.+... +-..+.++.+..++
T Consensus 43 lGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~-- 120 (245)
T PRK05690 43 LGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLDDDELAALI-- 120 (245)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHH--
Confidence 55566677777887543 3345555544333444333222 22445555566666
Q ss_pred CCCccEE-EeeCcHHHHHHHHHHHHhcCC
Q 024293 125 VPNLAMV-ESVDNEKIAGRLNRMVETMGR 152 (269)
Q Consensus 125 ~~~~~l~-~~v~s~~~a~~L~~~a~~~~~ 152 (269)
+.+|++ .+.|+.+.-..+++.+.+.++
T Consensus 121 -~~~DiVi~~~D~~~~r~~ln~~~~~~~i 148 (245)
T PRK05690 121 -AGHDLVLDCTDNVATRNQLNRACFAAKK 148 (245)
T ss_pred -hcCCEEEecCCCHHHHHHHHHHHHHhCC
Confidence 467855 478889887889999998876
No 71
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=38.27 E-value=4.5e+02 Score=26.84 Aligned_cols=157 Identities=12% Similarity=0.093 Sum_probs=77.4
Q ss_pred cEEEEEeccCCh----HHHHHHHHhCCCe--eeeccHHHHHHHHH---cC-----CCCceeeeecCCChhcHHhHhhcCC
Q 024293 61 IRIVAVSKTKPV----SVIRQVYEAGHRC--FGENYVQEIVEKAA---QL-----PDDLEWHFIGNLQSNKVKPLLAGVP 126 (269)
Q Consensus 61 ~~l~aVvKahg~----~~i~~l~~~G~~~--fgva~i~EA~~lr~---~i-----~~~I~~~~lG~~~~~~~~~lv~~~~ 126 (269)
++=|.-+++... ..+..|.++||+. ++|...+||..+.. .+ ..|+ .-=-++.+.-.-.+++...
T Consensus 29 vQSMt~t~T~D~~atv~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPL--VADIHF~~~~A~~a~~~v~ 106 (611)
T PRK02048 29 IQSMTNTSTMDTEACVAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPL--VADVHFNPKVADVAAQYAE 106 (611)
T ss_pred EEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCE--EEecCCCcHHHHHHHHhhC
Confidence 333444444432 3456677889886 88888888887642 22 2232 1002233333333332112
Q ss_pred CccEEEe-eCc------------H----------HHHHHHHHHHHhcCCCceeEEEEEeCCCC----CCccCCChh----
Q 024293 127 NLAMVES-VDN------------E----------KIAGRLNRMVETMGRKPLKVLVQVNTSGE----ESKSGVEPS---- 175 (269)
Q Consensus 127 ~~~l~~~-v~s------------~----------~~a~~L~~~a~~~~~~~i~V~lkIDtG~e----m~R~G~~~e---- 175 (269)
...+.+- +.+ . +-...+-+.|++.|+ + +-|-+|.|.- |.|+|-.|+
T Consensus 107 kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~-~--iRIGvN~GSL~~~i~~~yg~tpe~mVe 183 (611)
T PRK02048 107 KVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHT-A--IRIGVNHGSLSDRIMSRYGDTPEGMVE 183 (611)
T ss_pred CEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCC-C--EEEecCCcCchHHHHHHhCCChHHHHH
Confidence 2222221 111 1 333445566777776 5 4457898841 357887663
Q ss_pred hHHHHHHHHHhcCCCeEEEEeEeeCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 024293 176 GCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPE 229 (269)
Q Consensus 176 e~~~~~~~i~~~~~~L~i~GlmTH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 229 (269)
.+.++++.+. .+..-.+ ++|.=+++. ......++.++.++.+ .|++.
T Consensus 184 SAle~~~i~e-~~~f~di--viS~KsS~~---~~~V~AyRlLa~~l~~-~g~dy 230 (611)
T PRK02048 184 SCMEFLRICV-EEHFTDV--VISIKASNT---VVMVRTVRLLVAVMEA-EGMHY 230 (611)
T ss_pred HHHHHHHHHH-HCCCCcE--EEEEEeCCc---HHHHHHHHHHHHHHHh-cCCCC
Confidence 3444445554 4443333 466665433 2233344445555654 36653
No 72
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=38.23 E-value=3.2e+02 Score=25.83 Aligned_cols=115 Identities=11% Similarity=0.187 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccC--------ChHHHHHH-HHhCCCeeeeccHHHHHHH---HH
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTK--------PVSVIRQV-YEAGHRCFGENYVQEIVEK---AA 99 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKah--------g~~~i~~l-~~~G~~~fgva~i~EA~~l---r~ 99 (269)
-..+-++-.+.+-..++++.+.+|....++..+|++.+= |+...+.| ...+...++|+.++-=+.- -.
T Consensus 43 Pe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~kPli~VnH~~gHi~a~~l~~ 122 (342)
T COG0533 43 PELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNKPLIPVNHLEGHIEAARLET 122 (342)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhCCCEeecchHHHHHHHHHhcc
Confidence 344556667777777777777888777789999999992 33334555 5679999999998643322 11
Q ss_pred cCC-CCceeeee-cCCChhcHHhHhhcCCCccEE-EeeCcHHHHHHHHHHHHhcC
Q 024293 100 QLP-DDLEWHFI-GNLQSNKVKPLLAGVPNLAMV-ESVDNEKIAGRLNRMVETMG 151 (269)
Q Consensus 100 ~i~-~~I~~~~l-G~~~~~~~~~lv~~~~~~~l~-~~v~s~~~a~~L~~~a~~~~ 151 (269)
... +++.+++- |+++-=.++..- ++.+. .|+| ...-+++++.|+..|
T Consensus 123 ~~~~p~v~LlVSGGHTqli~~~~~g----~y~ilGeTlD-dA~Gea~DKvAR~lG 172 (342)
T COG0533 123 GLAFPPVALLVSGGHTQLIAVRGIG----RYEVLGETLD-DAAGEAFDKVARLLG 172 (342)
T ss_pred CCCCCcEEEEEecCceEEEEEcCCC----cEEEEeeech-hhhhHHHHHHHHHhC
Confidence 112 23544333 666543333221 24433 3333 334478888887554
No 73
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=38.17 E-value=4.5e+02 Score=26.75 Aligned_cols=125 Identities=12% Similarity=0.164 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCc----EEEEEecc-----CChHH-HHHHHHhCC--Ce----eeeccHHHH
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRI----RIVAVSKT-----KPVSV-IRQVYEAGH--RC----FGENYVQEI 94 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~----~l~aVvKa-----hg~~~-i~~l~~~G~--~~----fgva~i~EA 94 (269)
.+.+-+..++.++-..+ +++. ..|=+=-. .|... |+.+...|+ +. -|+-.++||
T Consensus 70 ~t~e~~~~~i~ql~~~l----------epG~t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~le~A 139 (717)
T COG4981 70 VTEEIFTNAIEQLVSLL----------EPGRTAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPSLEEA 139 (717)
T ss_pred cCHHHHHHHHHHHHhcc----------CCCccceeeEEEechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCcHHHH
Confidence 48888999999999988 3332 22222222 34333 455554442 33 355678888
Q ss_pred HHHHHcCCC-CceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCC-
Q 024293 95 VEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGV- 172 (269)
Q Consensus 95 ~~lr~~i~~-~I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~- 172 (269)
.+|.+.+.. -+.|+.+-| .++++....-+.|++. . ..+|.|++.= +|-|=
T Consensus 140 ~ElI~~L~~~G~~yv~fKP----------------------GtIeqI~svi~IAka~-P-~~pIilq~eg----GraGGH 191 (717)
T COG4981 140 VELIEELGDDGFPYVAFKP----------------------GTIEQIRSVIRIAKAN-P-TFPIILQWEG----GRAGGH 191 (717)
T ss_pred HHHHHHHhhcCceeEEecC----------------------CcHHHHHHHHHHHhcC-C-CCceEEEEec----CccCCc
Confidence 888877543 354443322 2223333333455554 3 6788888864 45552
Q ss_pred -ChhhH----HHHHHHHHhcCCCeEEE
Q 024293 173 -EPSGC----LELVKHVSQNCPNLEFC 194 (269)
Q Consensus 173 -~~ee~----~~~~~~i~~~~~~L~i~ 194 (269)
+.+++ ...+.+|+ .++|+.++
T Consensus 192 HSweDld~llL~tYs~lR-~~~NIvl~ 217 (717)
T COG4981 192 HSWEDLDDLLLATYSELR-SRDNIVLC 217 (717)
T ss_pred cchhhcccHHHHHHHHHh-cCCCEEEE
Confidence 22444 45568888 99998764
No 74
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.66 E-value=1.3e+02 Score=29.28 Aligned_cols=63 Identities=16% Similarity=0.240 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCceeEEEEEe---------------CCCCCCccCCCh---hhHHHHHHHHHhcCCCeEEEEeEeeC
Q 024293 139 IAGRLNRMVETMGRKPLKVLVQVN---------------TSGEESKSGVEP---SGCLELVKHVSQNCPNLEFCGLMTIG 200 (269)
Q Consensus 139 ~a~~L~~~a~~~~~~~i~V~lkID---------------tG~em~R~G~~~---ee~~~~~~~i~~~~~~L~i~GlmTH~ 200 (269)
.|..+.++...+|+ +|++.+| .|+-..+-|++| ..+..+++..- ..++=.|+++||-+
T Consensus 240 ~At~IAEyFRDqG~---~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG-~~~~GsITafYTVL 315 (441)
T COG1157 240 TATTIAEYFRDQGK---RVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAG-NGDKGSITAFYTVL 315 (441)
T ss_pred HHHHHHHHHHhCCC---eEEEEeecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHhHHHHhhcC-CCCCCcEEEEEEEE
Confidence 34456667777887 7999999 566667779998 56677777664 33444599999999
Q ss_pred CCCCC
Q 024293 201 MPDYT 205 (269)
Q Consensus 201 a~~~~ 205 (269)
..+|+
T Consensus 316 veGDD 320 (441)
T COG1157 316 VEGDD 320 (441)
T ss_pred eecCC
Confidence 87554
No 75
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=36.62 E-value=1.8e+02 Score=25.67 Aligned_cols=56 Identities=21% Similarity=0.209 Sum_probs=36.2
Q ss_pred CcEEEEEecc--CChHHHHHHHHhCCCeeeecc------HHHHHHHHHcCCCCceeeeecCCCh
Q 024293 60 RIRIVAVSKT--KPVSVIRQVYEAGHRCFGENY------VQEIVEKAAQLPDDLEWHFIGNLQS 115 (269)
Q Consensus 60 ~~~l~aVvKa--hg~~~i~~l~~~G~~~fgva~------i~EA~~lr~~i~~~I~~~~lG~~~~ 115 (269)
+..++|=.|+ -|..+++.+.++|++++.|.. +..++...+.....+..-++|.-.+
T Consensus 56 d~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~ 119 (217)
T COG0269 56 DKIIVADLKTADAGAIEARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDP 119 (217)
T ss_pred CCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCH
Confidence 4579999999 577788899999999987754 4444433333333333345555433
No 76
>PRK07534 methionine synthase I; Validated
Probab=35.88 E-value=1.6e+02 Score=27.54 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=42.0
Q ss_pred EEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeEEEEe-Eee
Q 024293 130 MVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGL-MTI 199 (269)
Q Consensus 130 l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~i~Gl-mTH 199 (269)
+..|+.|+..++.+-+++++.++ ++-|.+-++.++ -.+.|.+.+++...+... -+.+...|+ ++|
T Consensus 149 ~~ET~p~l~E~~a~~~~~~~~~~-Pv~vSft~~~~g-~l~~G~~~~~~~~~~~~~---~~~~~avGvNC~~ 214 (336)
T PRK07534 149 WVETISAPEEIRAAAEAAKLAGM-PWCGTMSFDTAG-RTMMGLTPADLADLVEKL---GEPPLAFGANCGV 214 (336)
T ss_pred EEeccCCHHHHHHHHHHHHHcCC-eEEEEEEECCCC-eeCCCCcHHHHHHHHHhc---CCCceEEEecCCC
Confidence 45789999999999999887776 766666666542 345676655555444321 124456666 444
No 77
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=35.51 E-value=1.1e+02 Score=28.32 Aligned_cols=67 Identities=16% Similarity=0.254 Sum_probs=50.9
Q ss_pred ccEE--EeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeEEEEe-EeeC
Q 024293 128 LAMV--ESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGL-MTIG 200 (269)
Q Consensus 128 ~~l~--~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~i~Gl-mTH~ 200 (269)
.|+. .|+.++..++++-++.++.++ +.-+-.-++.++ --|.|-..++ .+..+. .+|++-..|| ++|+
T Consensus 148 ~Dlla~ETip~i~Ea~Aiv~l~~~~s~-p~wISfT~~d~~-~lr~Gt~l~e---aa~~~~-~~~~iaa~gvNC~~p 217 (300)
T COG2040 148 ADLLACETLPNITEAEAIVQLVQEFSK-PAWISFTLNDDT-RLRDGTPLSE---AAAILA-GLPNIAALGVNCCHP 217 (300)
T ss_pred CcEEeecccCChHHHHHHHHHHHHhCC-ceEEEEEeCCCC-ccCCCccHHH---HHHHHh-cCcchhheeeccCCh
Confidence 4543 789999999999999988888 888888888653 6788865544 445566 7788888888 6666
No 78
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.66 E-value=2.3e+02 Score=22.90 Aligned_cols=60 Identities=10% Similarity=0.250 Sum_probs=46.7
Q ss_pred ccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCe
Q 024293 128 LAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNL 191 (269)
Q Consensus 128 ~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L 191 (269)
+.+...=+|.+.++.+.+..++.. + +|.|-.--|.+.+++|-+++.+.+.++... .-.++
T Consensus 3 vgiVIVSHS~~lAeGv~~li~em~--~-dv~i~~~gGtddg~iGTs~~~I~~aI~~~~-~ad~~ 62 (129)
T COG3412 3 VGIVIVSHSKELAEGVAELIREMA--G-DVPITYAGGTDDGQIGTSFEKIMEAIEKAN-EADHV 62 (129)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHh--C-CCceEEecCCCCCCcCcCHHHHHHHHHhcc-ccCce
Confidence 456677789999999999998774 3 788888888889999999988887777654 44443
No 79
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=30.18 E-value=2.5e+02 Score=25.68 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=40.6
Q ss_pred EEEeeCcHHHHHHHHHHHHhc--CCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeEEEEe
Q 024293 130 MVESVDNEKIAGRLNRMVETM--GRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGL 196 (269)
Q Consensus 130 l~~~v~s~~~a~~L~~~a~~~--~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~i~Gl 196 (269)
+..|+.+++.++.+-+.+++. ++ |+-+.+-++.++ ..+.|.++ .+++..+. .++.+...|+
T Consensus 158 ~~ET~~~~~E~~~~~~~~~~~~~~~-pv~is~~~~~~g-~l~~G~~~---~~~~~~l~-~~~~~~~iGi 220 (304)
T PRK09485 158 ACETIPNLDEAEALVELLKEEFPGV-PAWLSFTLRDGT-HISDGTPL---AEAAALLA-ASPQVVAVGV 220 (304)
T ss_pred EEeccCCHHHHHHHHHHHHHhcCCC-cEEEEEEeCCCC-cCCCCCCH---HHHHHHHh-cCCCceEEEe
Confidence 457899999999888888755 55 666666665542 55667654 45555555 5555666777
No 80
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=29.64 E-value=3.7e+02 Score=23.22 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=47.1
Q ss_pred CChHHHHHHHHhCCCee------------------------eeccHHHHHHHHHcCCCCceeeee-cCCChhcHHhHhhc
Q 024293 70 KPVSVIRQVYEAGHRCF------------------------GENYVQEIVEKAAQLPDDLEWHFI-GNLQSNKVKPLLAG 124 (269)
Q Consensus 70 hg~~~i~~l~~~G~~~f------------------------gva~i~EA~~lr~~i~~~I~~~~l-G~~~~~~~~~lv~~ 124 (269)
.|...+..|..+|+..| |-.+.+-+.+....+.+.+.+..+ ..+..+.+..++
T Consensus 32 lGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~~~~~~~~~-- 109 (228)
T cd00757 32 LGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERLDAENAEELI-- 109 (228)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecceeCHHHHHHHH--
Confidence 55666677777888554 334444444333334333322222 233344555565
Q ss_pred CCCccEE-EeeCcHHHHHHHHHHHHhcCC
Q 024293 125 VPNLAMV-ESVDNEKIAGRLNRMVETMGR 152 (269)
Q Consensus 125 ~~~~~l~-~~v~s~~~a~~L~~~a~~~~~ 152 (269)
..+|++ .++|+.+.-..|++.+.+.++
T Consensus 110 -~~~DvVi~~~d~~~~r~~l~~~~~~~~i 137 (228)
T cd00757 110 -AGYDLVLDCTDNFATRYLINDACVKLGK 137 (228)
T ss_pred -hCCCEEEEcCCCHHHHHHHHHHHHHcCC
Confidence 357755 467888888889999998876
No 81
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=29.22 E-value=4.1e+02 Score=24.79 Aligned_cols=80 Identities=10% Similarity=0.120 Sum_probs=48.3
Q ss_pred CChHHHHHHHHhCCCeeee--------------------------ccHHHHHHHHHcCCCCceeee-ecCCChhcHHhHh
Q 024293 70 KPVSVIRQVYEAGHRCFGE--------------------------NYVQEIVEKAAQLPDDLEWHF-IGNLQSNKVKPLL 122 (269)
Q Consensus 70 hg~~~i~~l~~~G~~~fgv--------------------------a~i~EA~~lr~~i~~~I~~~~-lG~~~~~~~~~lv 122 (269)
.|...+..|..+|+..|.+ .+.+.|.+....+.+.+.... ...+.++.+..++
T Consensus 35 lGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~ 114 (338)
T PRK12475 35 LGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEELEELV 114 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh
Confidence 5566667788889866652 233333333333444432222 2444555666676
Q ss_pred hcCCCccEE-EeeCcHHHHHHHHHHHHhcCC
Q 024293 123 AGVPNLAMV-ESVDNEKIAGRLNRMVETMGR 152 (269)
Q Consensus 123 ~~~~~~~l~-~~v~s~~~a~~L~~~a~~~~~ 152 (269)
..+|++ ...|+.+.-..+++.+.+.++
T Consensus 115 ---~~~DlVid~~D~~~~r~~in~~~~~~~i 142 (338)
T PRK12475 115 ---KEVDLIIDATDNFDTRLLINDLSQKYNI 142 (338)
T ss_pred ---cCCCEEEEcCCCHHHHHHHHHHHHHcCC
Confidence 467855 456888777789999998876
No 82
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=28.18 E-value=1.5e+02 Score=24.39 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccC------ChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCceeeee
Q 024293 38 TALRSVIQRVHQAAERSSRPPDRIRIVAVSKTK------PVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (269)
Q Consensus 38 ~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKah------g~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~l 110 (269)
||+-..++.. ..++.++. =+++.+.++|+. |...+ +.++++|...+-..-+++|+++ +.+++++ ++
T Consensus 8 HN~~S~~rv~-e~ariayg--fg~k~lV~tka~g~AAQsGIp~~~kla~k~G~~vlvf~dL~DAlev---L~P~v~l-l~ 80 (147)
T COG4080 8 HNVSSVQRVL-EFARIAYG--FGAKRLVLTKAKGSAAQSGIPEVLKLAFKLGKPVLVFPDLDDALEV---LRPDVTL-LV 80 (147)
T ss_pred ecCCchHHHH-HHHHHHcc--cCccEEEEEecccHhhhhccHHHHHHHHHhCCcEEEehhHHHHHHh---cCCceEE-Ee
Confidence 4555545433 34444442 358899999994 44555 5668999999888999999853 5666654 44
Q ss_pred c
Q 024293 111 G 111 (269)
Q Consensus 111 G 111 (269)
|
T Consensus 81 ~ 81 (147)
T COG4080 81 G 81 (147)
T ss_pred c
Confidence 5
No 83
>PHA01627 DNA binding protein
Probab=27.66 E-value=2.1e+02 Score=22.37 Aligned_cols=54 Identities=15% Similarity=0.224 Sum_probs=40.7
Q ss_pred eeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCC
Q 024293 107 WHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS 164 (269)
Q Consensus 107 ~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG 164 (269)
+..+..+..++++.++ ..-.++..|.+.+.|+.+++.+.-.=. .=++-|+++.|
T Consensus 20 ~v~~~~i~~~Eak~~v---~~~~~vSaIGH~sTA~lls~llg~~ip-~NRi~i~~~~G 73 (107)
T PHA01627 20 TVVIDKIDIEEAKELL---ENEEFVSAIGHDATANLLSNLCGVNLP-KNRIEIKLDKG 73 (107)
T ss_pred EEEEecCCHHHHHHHh---cccCeEEeeccHHHHHHHHHHhCcccc-ccceEEEecCC
Confidence 3456888889999988 346799999999999999999863211 23466677777
No 84
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=27.55 E-value=3.5e+02 Score=22.33 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=35.1
Q ss_pred EEEEeccCChHHHHHHHHhCCCeeeeccH--------------HHHHHHHHcCCCCceeeeecCCChhcHHhHh
Q 024293 63 IVAVSKTKPVSVIRQVYEAGHRCFGENYV--------------QEIVEKAAQLPDDLEWHFIGNLQSNKVKPLL 122 (269)
Q Consensus 63 l~aVvKahg~~~i~~l~~~G~~~fgva~i--------------~EA~~lr~~i~~~I~~~~lG~~~~~~~~~lv 122 (269)
++.++ .|..+++..+.+.|+++++++-+ +...+..+....|+ ..+|-+.++.+..+.
T Consensus 97 ~ig~S-~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv--~AlGGI~~~~i~~l~ 167 (180)
T PF02581_consen 97 IIGAS-CHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPV--YALGGITPENIPELR 167 (180)
T ss_dssp EEEEE-ESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCE--EEESS--TTTHHHHH
T ss_pred EEEee-cCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCE--EEEcCCCHHHHHHHH
Confidence 55554 68887777777888888777765 22222222344454 567878888888776
No 85
>KOG0187 consensus 40S ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
Probab=27.07 E-value=26 Score=28.10 Aligned_cols=14 Identities=57% Similarity=0.890 Sum_probs=12.0
Q ss_pred hHHHHHhhhhhhhH
Q 024293 6 HEEERKRRENHINE 19 (269)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (269)
+||||.||.|.+-|
T Consensus 74 QEEERErrdnyVPe 87 (134)
T KOG0187|consen 74 QEEERERRDNYVPE 87 (134)
T ss_pred cHHHHHhhcccCcc
Confidence 68999999998865
No 86
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=26.39 E-value=2.6e+02 Score=22.07 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=37.6
Q ss_pred ccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCCh
Q 024293 128 LAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP 174 (269)
Q Consensus 128 ~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ 174 (269)
..++.-++|.+.+..|.+.+.+.|. +..++.++.-|. -.=+|+.|
T Consensus 56 ~KVVLkv~~e~eL~~L~~~a~~~gi-~~~l~te~p~gt-~T~LaigP 100 (116)
T cd02429 56 HKVVLEVPDEAALKNLSSKLTENSI-KHKLWIEQPENI-PTCIALKP 100 (116)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEEcCCCC-ceEEEeCC
Confidence 4577889999999999999999998 888999997774 45577776
No 87
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=26.04 E-value=1.9e+02 Score=26.13 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=42.4
Q ss_pred cCChHHHHHHHHhCCCeeeecc-----HHHHHHHHHcCCCCceeeeecCCChhcHHhHhhcCCCccEEEeeCcHH
Q 024293 69 TKPVSVIRQVYEAGHRCFGENY-----VQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEK 138 (269)
Q Consensus 69 ahg~~~i~~l~~~G~~~fgva~-----i~EA~~lr~~i~~~I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~ 138 (269)
.|..+++..+.++|++++++.. +.++....+....++.+..+|-+.++.+..+++ -..+.+ ++.++-
T Consensus 190 v~t~eea~~A~~~gaD~I~ld~~~p~~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~~~~~--~Gvd~I-~vsai~ 261 (272)
T cd01573 190 VDSLEEALAAAEAGADILQLDKFSPEELAELVPKLRSLAPPVLLAAAGGINIENAAAYAA--AGADIL-VTSAPY 261 (272)
T ss_pred cCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhccCCCceEEEECCCCHHHHHHHHH--cCCcEE-EEChhh
Confidence 5777777777789999987633 234443222221234456778899999988874 235666 666663
No 88
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=25.37 E-value=3.4e+02 Score=25.79 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=46.5
Q ss_pred eeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeEEEEeEeeCCC
Q 024293 133 SVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP 202 (269)
Q Consensus 133 ~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~i~GlmTH~a~ 202 (269)
.||=...++++++.+...|+ -+.+|| | | +|--+.- .-+.++++.++ .+|++.+..+.||+..
T Consensus 140 ~Vd~eyLl~w~~kVa~~Kgk-glEaHl--D-G--qGEP~lY-P~l~~lVqalk-~~~~v~vVSmQTng~~ 201 (414)
T COG2100 140 VVDPEYLLEWFEKVARFKGK-GLEAHL--D-G--QGEPLLY-PHLVDLVQALK-EHKGVEVVSMQTNGVL 201 (414)
T ss_pred EecHHHHHHHHHHHHhhhCC-CeEEEe--c-C--CCCCccc-hhHHHHHHHHh-cCCCceEEEEeeCcee
Confidence 34545566899999988887 677764 4 3 4544444 35788899999 9999999999999863
No 89
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=24.79 E-value=79 Score=29.06 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc-CChHHHHHHHHhCCCeeee
Q 024293 38 TALRSVIQRVHQAAERSSRPPDRIRIVAVSKT-KPVSVIRQVYEAGHRCFGE 88 (269)
Q Consensus 38 ~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa-hg~~~i~~l~~~G~~~fgv 88 (269)
.+++.|++.+ ++-+|+.+|- | ..+++.|.++|++.+.+
T Consensus 57 ~~I~~I~~~V------------~iPVig~~kigh-~~Ea~~L~~~GvDiIDe 95 (287)
T TIGR00343 57 KMIKEIMDAV------------SIPVMAKVRIGH-FVEAQILEALGVDYIDE 95 (287)
T ss_pred HHHHHHHHhC------------CCCEEEEeeccH-HHHHHHHHHcCCCEEEc
Confidence 5667788776 5669999997 6 67788889999999854
No 90
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.36 E-value=5.5e+02 Score=23.51 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=39.3
Q ss_pred EEeccCChHHHHHHHHhCCCeeee-----ccHHHHHHHHHcCCCCceeeeecCCChhcHHhHh
Q 024293 65 AVSKTKPVSVIRQVYEAGHRCFGE-----NYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLL 122 (269)
Q Consensus 65 aVvKahg~~~i~~l~~~G~~~fgv-----a~i~EA~~lr~~i~~~I~~~~lG~~~~~~~~~lv 122 (269)
--+-.|..+++..+.++|++.+.+ ..+.+++.+.+.....+.+...|.+..+.+..++
T Consensus 199 I~VEv~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya 261 (288)
T PRK07428 199 IEVETETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVA 261 (288)
T ss_pred EEEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHH
Confidence 344567888888888898888544 4566666543332334455777989999998887
No 91
>PRK07877 hypothetical protein; Provisional
Probab=24.28 E-value=8.3e+02 Score=25.52 Aligned_cols=88 Identities=19% Similarity=0.216 Sum_probs=58.7
Q ss_pred CcEEEEEeccCChHHHHHHHHhCC------------------------CeeeeccHHHHHHHHHcCCCCceeee-ecCCC
Q 024293 60 RIRIVAVSKTKPVSVIRQVYEAGH------------------------RCFGENYVQEIVEKAAQLPDDLEWHF-IGNLQ 114 (269)
Q Consensus 60 ~~~l~aVvKahg~~~i~~l~~~G~------------------------~~fgva~i~EA~~lr~~i~~~I~~~~-lG~~~ 114 (269)
.+-++++ +.|...+..|..+|+ ..+|.++++-|.+....+.+.+.... -..+.
T Consensus 109 ~V~IvG~--GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~ 186 (722)
T PRK07877 109 RIGVVGL--SVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLT 186 (722)
T ss_pred CEEEEEe--cHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 4666776 467665666677886 34666777777665555655443222 25566
Q ss_pred hhcHHhHhhcCCCccEE-EeeCcHHHHHHHHHHHHhcCC
Q 024293 115 SNKVKPLLAGVPNLAMV-ESVDNEKIAGRLNRMVETMGR 152 (269)
Q Consensus 115 ~~~~~~lv~~~~~~~l~-~~v~s~~~a~~L~~~a~~~~~ 152 (269)
++.+..++ ..+|++ -.+|+++.=-.|++.|.+.++
T Consensus 187 ~~n~~~~l---~~~DlVvD~~D~~~~R~~ln~~a~~~~i 222 (722)
T PRK07877 187 EDNVDAFL---DGLDVVVEECDSLDVKVLLREAARARRI 222 (722)
T ss_pred HHHHHHHh---cCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 77788877 467855 568888877789999998876
No 92
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=23.85 E-value=7.9e+02 Score=25.08 Aligned_cols=134 Identities=12% Similarity=0.085 Sum_probs=67.7
Q ss_pred EEEEEeccCCh----HHHHHHHHhCCCe--eeeccHHHHHHHHH---c-----CCCCceeeeecCCChhcHHhHhhcCCC
Q 024293 62 RIVAVSKTKPV----SVIRQVYEAGHRC--FGENYVQEIVEKAA---Q-----LPDDLEWHFIGNLQSNKVKPLLAGVPN 127 (269)
Q Consensus 62 ~l~aVvKahg~----~~i~~l~~~G~~~--fgva~i~EA~~lr~---~-----i~~~I~~~~lG~~~~~~~~~lv~~~~~ 127 (269)
+=|.-++++.. ..+..|.++||+. ++|...++|..+.. . ...|+ .-=-++.+.-+-.+++....
T Consensus 34 QSMt~t~T~D~~atv~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPL--VADIHF~~~~A~~a~~~vdk 111 (606)
T PRK00694 34 QSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPL--VADIHFFPQAAMHVADFVDK 111 (606)
T ss_pred EecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCE--EeecCCChHHHHHHHHhcCc
Confidence 33444444443 3356677889876 78888888887642 2 12232 11123344333333321122
Q ss_pred ccEEE-eeCc----------------------HHHHHHHHHHHHhcCCCceeEEEEEeCCCC----CCccCCChh----h
Q 024293 128 LAMVE-SVDN----------------------EKIAGRLNRMVETMGRKPLKVLVQVNTSGE----ESKSGVEPS----G 176 (269)
Q Consensus 128 ~~l~~-~v~s----------------------~~~a~~L~~~a~~~~~~~i~V~lkIDtG~e----m~R~G~~~e----e 176 (269)
..+.+ .+.+ .+....+-+.|++.|+ + +-|-+|.|.- |.|+|-.|+ .
T Consensus 112 iRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~-~--IRIGvN~GSL~~~i~~~yG~tpegmVeS 188 (606)
T PRK00694 112 VRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGK-A--MRIGVNHGSLSERVMQRYGDTIEGMVYS 188 (606)
T ss_pred eEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCC-C--EEEecCCcCchHHHHHHhCCCHHHHHHH
Confidence 22222 1222 3444556667777776 5 4457898831 357886663 3
Q ss_pred HHHHHHHHHhcCCCeEEEEeEeeCCCC
Q 024293 177 CLELVKHVSQNCPNLEFCGLMTIGMPD 203 (269)
Q Consensus 177 ~~~~~~~i~~~~~~L~i~GlmTH~a~~ 203 (269)
+.++++.+. .+..-.+ ++|.=+++
T Consensus 189 Ale~~~i~e-~~~f~di--viS~KsSn 212 (606)
T PRK00694 189 ALEYIEVCE-KLDYRDV--VFSMKSSN 212 (606)
T ss_pred HHHHHHHHH-HCCCCcE--EEEEEcCC
Confidence 444445554 4443333 46666543
No 93
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.72 E-value=5.6e+02 Score=23.29 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHHHHHHHhCCCeeeecc--HHHHHHHHHcCCCCceeeeecCC
Q 024293 36 AATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENY--VQEIVEKAAQLPDDLEWHFIGNL 113 (269)
Q Consensus 36 l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i~~l~~~G~~~fgva~--i~EA~~lr~~i~~~I~~~~lG~~ 113 (269)
+..-++.+|+.+ ++. .++.|. .|..+++..+.+.|+++++.-. +++..+.++.+..|+.+..+|-+
T Consensus 174 ~~~~v~~aR~~~----------~~~-~~Igvs-v~tleea~~A~~~gaDyI~lD~~~~e~l~~~~~~~~~~i~i~AiGGI 241 (277)
T PRK08072 174 ITKAVTSVREKL----------GHM-VKIEVE-TETEEQVREAVAAGADIIMFDNRTPDEIREFVKLVPSAIVTEASGGI 241 (277)
T ss_pred HHHHHHHHHHhC----------CCC-CEEEEE-eCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhcCCCceEEEECCC
Confidence 445555555554 433 244443 4888888888889999987753 34444334434445545688999
Q ss_pred ChhcHHhHhhcCCCccEEEeeCcH
Q 024293 114 QSNKVKPLLAGVPNLAMVESVDNE 137 (269)
Q Consensus 114 ~~~~~~~lv~~~~~~~l~~~v~s~ 137 (269)
..+.+..+++. ..+. .++.++
T Consensus 242 t~~ni~~~a~~--Gvd~-IAvg~l 262 (277)
T PRK08072 242 TLENLPAYGGT--GVDY-ISLGFL 262 (277)
T ss_pred CHHHHHHHHHc--CCCE-EEEChh
Confidence 99999998831 2444 445554
No 94
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=23.57 E-value=4.5e+02 Score=22.13 Aligned_cols=167 Identities=18% Similarity=0.211 Sum_probs=77.2
Q ss_pred HHHHHHHHhCCCeeee-----c-------cHHHHHHHHHcCCCCceeeeecCCChhcHHhHhhcCCCccE--EEeeCcHH
Q 024293 73 SVIRQVYEAGHRCFGE-----N-------YVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAM--VESVDNEK 138 (269)
Q Consensus 73 ~~i~~l~~~G~~~fgv-----a-------~i~EA~~lr~~i~~~I~~~~lG~~~~~~~~~lv~~~~~~~l--~~~v~s~~ 138 (269)
+.+..+.+.|++++++ . .++.+.+++...+.++..+++..-..+.+..+.+. ..+. .|...+ +
T Consensus 20 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~--g~d~v~vh~~~~-~ 96 (220)
T PRK05581 20 EEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKA--GADIITFHVEAS-E 96 (220)
T ss_pred HHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHc--CCCEEEEeeccc-h
Confidence 3456777889988777 3 24555555544433432355544323344444421 2454 333222 2
Q ss_pred HHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeEEEEeEeeCCC-CCC-CcHHHHHHHHH
Q 024293 139 IAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP-DYT-STPENFKTLAK 216 (269)
Q Consensus 139 ~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~i~GlmTH~a~-~~~-~~~~~~~~~~~ 216 (269)
.....-+.....+. .+ -+.++ |....+.++.+. .. ..+.++++.++. +.. .....++.+.+
T Consensus 97 ~~~~~~~~~~~~~~---~~--g~~~~---------~~t~~e~~~~~~-~~--~d~i~~~~~~~g~tg~~~~~~~~~~i~~ 159 (220)
T PRK05581 97 HIHRLLQLIKSAGI---KA--GLVLN---------PATPLEPLEDVL-DL--LDLVLLMSVNPGFGGQKFIPEVLEKIRE 159 (220)
T ss_pred hHHHHHHHHHHcCC---EE--EEEEC---------CCCCHHHHHHHH-hh--CCEEEEEEECCCCCcccccHHHHHHHHH
Confidence 22233334444443 22 22232 111123334443 22 235567776553 222 22333444444
Q ss_pred HHHHHHHHcCCCCCcce-eecCCccC-HHHHHHcCCCeeeeChhhhCC
Q 024293 217 CRSEVCKALGIPEEQCD-LSMGMSGD-FELAIEMGSTNVRIGSTIFGA 262 (269)
Q Consensus 217 ~~~~l~~~~g~~~~~~~-lS~G~s~~-~~~~~~~~~~~VR~G~alyG~ 262 (269)
+.+.... .++++ .. +..|-+.+ .......|.|.|=+|++||+.
T Consensus 160 ~~~~~~~-~~~~~--~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~ 204 (220)
T PRK05581 160 LRKLIDE-RGLDI--LIEVDGGINADNIKECAEAGADVFVAGSAVFGA 204 (220)
T ss_pred HHHHHHh-cCCCc--eEEEECCCCHHHHHHHHHcCCCEEEEChhhhCC
Confidence 4332221 12221 22 34455543 333345789999999999974
No 95
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=23.39 E-value=6.4e+02 Score=23.87 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=40.7
Q ss_pred CCChhhHHHHHHHHHhcCCCeEEEEe-EeeCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHH---H
Q 024293 171 GVEPSGCLELVKHVSQNCPNLEFCGL-MTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELA---I 246 (269)
Q Consensus 171 G~~~ee~~~~~~~i~~~~~~L~i~Gl-mTH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~---~ 246 (269)
|+.+++...+-..+. ..+++.+.=| -+|. .+ ..+.+....+++.+ +. ..+-.||-.+...+ +
T Consensus 104 G~~~~d~er~~~L~~-~~~g~D~iviD~AhG-----hs----~~~i~~ik~ik~~~--P~--~~vIaGNV~T~e~a~~Li 169 (346)
T PRK05096 104 GTSDADFEKTKQILA-LSPALNFICIDVANG-----YS----EHFVQFVAKAREAW--PD--KTICAGNVVTGEMVEELI 169 (346)
T ss_pred cCCHHHHHHHHHHHh-cCCCCCEEEEECCCC-----cH----HHHHHHHHHHHHhC--CC--CcEEEecccCHHHHHHHH
Confidence 377777665554444 4455555333 2333 11 22334444566643 11 33566777775533 5
Q ss_pred HcCCCeeeeChh
Q 024293 247 EMGSTNVRIGST 258 (269)
Q Consensus 247 ~~~~~~VR~G~a 258 (269)
..|.|-||+|+.
T Consensus 170 ~aGAD~vKVGIG 181 (346)
T PRK05096 170 LSGADIVKVGIG 181 (346)
T ss_pred HcCCCEEEEccc
Confidence 679999998874
No 96
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=22.31 E-value=4.7e+02 Score=24.80 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=59.6
Q ss_pred CCCcEEEEEeccCCh----HHHHHHHHhCCCe--eeeccHHHHHHHHHc---CCCCc--eeeeecCCChhcHHhHhhc-C
Q 024293 58 PDRIRIVAVSKTKPV----SVIRQVYEAGHRC--FGENYVQEIVEKAAQ---LPDDL--EWHFIGNLQSNKVKPLLAG-V 125 (269)
Q Consensus 58 ~~~~~l~aVvKahg~----~~i~~l~~~G~~~--fgva~i~EA~~lr~~---i~~~I--~~~~lG~~~~~~~~~lv~~-~ 125 (269)
|-.++=|--+|+|.. ..|+.|.++|++- ++|.+.+.|..+.+- +.-|+ -+|| +..-+-..++. .
T Consensus 21 PI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDiHf----~~rla~~~~~~g~ 96 (361)
T COG0821 21 PIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADIHF----DYRLALEAAECGV 96 (361)
T ss_pred ceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEEEeec----cHHHHHHhhhcCc
Confidence 333455666777764 3356778899886 888888888765422 33332 1244 22222222211 0
Q ss_pred CCccEEE-eeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCC
Q 024293 126 PNLAMVE-SVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSG 165 (269)
Q Consensus 126 ~~~~l~~-~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~ 165 (269)
..+.+.+ .+.+.+....+-+.|+..|+ + +-|-+|.|.
T Consensus 97 ~k~RINPGNig~~~~v~~vVe~Ak~~g~-p--iRIGVN~GS 134 (361)
T COG0821 97 DKVRINPGNIGFKDRVREVVEAAKDKGI-P--IRIGVNAGS 134 (361)
T ss_pred ceEEECCcccCcHHHHHHHHHHHHHcCC-C--EEEecccCc
Confidence 1123332 47778888888899999887 5 455799884
No 97
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=22.13 E-value=5.7e+02 Score=22.86 Aligned_cols=53 Identities=9% Similarity=0.152 Sum_probs=30.7
Q ss_pred EEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCC
Q 024293 130 MVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCP 189 (269)
Q Consensus 130 l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~ 189 (269)
+...+++++.+...-+.+++.|. .+.+. +++.. . ....++.+.++++.+. .+.
T Consensus 110 i~~~~~~~~~~~~~i~~ak~~G~-~v~~~--i~~~~-~--~~~~~~~~~~~~~~~~-~~G 162 (275)
T cd07937 110 IFDALNDVRNLEVAIKAVKKAGK-HVEGA--ICYTG-S--PVHTLEYYVKLAKELE-DMG 162 (275)
T ss_pred EeecCChHHHHHHHHHHHHHCCC-eEEEE--EEecC-C--CCCCHHHHHHHHHHHH-HcC
Confidence 34445566666666677777776 44443 33210 1 2246678888888876 553
No 98
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=21.13 E-value=4e+02 Score=24.04 Aligned_cols=122 Identities=13% Similarity=0.146 Sum_probs=62.7
Q ss_pred hHHHHHhhhcCCc-C----CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHHHHHHHhCCCeeeec---
Q 024293 18 NEQVEAETMAASA-A----TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGEN--- 89 (269)
Q Consensus 18 ~~~~~~~~~~~~~-~----dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i~~l~~~G~~~fgva--- 89 (269)
....-+|.||..+ | |.++-..++..+...+..+. . .++..+.=+-.+....++.++++|++.+=+-
T Consensus 27 ~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~-~-----~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~ 100 (267)
T PRK10128 27 TTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIA-P-----YASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVD 100 (267)
T ss_pred CCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHH-h-----cCCCeEEECCCCCHHHHHHHhCCCCCeeEecCcC
Confidence 3445677777765 1 44444444444444443221 1 1333333334466677889999999998655
Q ss_pred cHHHHHHHHHcCC-CCc--e--------eeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHh
Q 024293 90 YVQEIVEKAAQLP-DDL--E--------WHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVET 149 (269)
Q Consensus 90 ~i~EA~~lr~~i~-~~I--~--------~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~ 149 (269)
+.+||..+.++.. +|. + ..-.|.. .+.+...= ++.-++.-|++.+-++.+++.+.-
T Consensus 101 saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~-~~y~~~an---~~~~vi~qiEt~~a~~n~~~I~~~ 167 (267)
T PRK10128 101 TAEQARQVVSATRYPPYGERGVGASVARAARWGRI-ENYMAQAN---DSLCLLVQVESKTALDNLDEILDV 167 (267)
T ss_pred CHHHHHHHHHhcCCCCCCCCCCCCccchhhccCCh-HHHHHHhc---cccEEEEEECCHHHHHhHHHHhCC
Confidence 5566665555532 121 0 0001111 11111111 123466777888777777777754
No 99
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=21.02 E-value=6.1e+02 Score=22.74 Aligned_cols=66 Identities=11% Similarity=0.156 Sum_probs=40.9
Q ss_pred ccCChHHHHHHHHhCCCeeeec-----cHHHHHHHHHcCCCCceeeeecCCChhcHHhHhhcCCCccEEEeeCcH
Q 024293 68 KTKPVSVIRQVYEAGHRCFGEN-----YVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNE 137 (269)
Q Consensus 68 Kahg~~~i~~l~~~G~~~fgva-----~i~EA~~lr~~i~~~I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~ 137 (269)
=.|..+++..+.++|++.+++- .+.++....+.. .++.+..+|.+.++.+..++. -..|.+. +.++
T Consensus 187 ev~t~eea~~A~~~gaD~I~ld~~~~e~l~~~v~~i~~~-~~i~i~asGGIt~~ni~~~a~--~Gad~Is-vgal 257 (269)
T cd01568 187 EVETLEEAEEALEAGADIIMLDNMSPEELKEAVKLLKGL-PRVLLEASGGITLENIRAYAE--TGVDVIS-TGAL 257 (269)
T ss_pred ecCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhccC-CCeEEEEECCCCHHHHHHHHH--cCCCEEE-EcHH
Confidence 3477777877788999998873 334433322222 234457789999999998873 1255543 4444
No 100
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=20.87 E-value=5.2e+02 Score=21.89 Aligned_cols=171 Identities=17% Similarity=0.208 Sum_probs=87.1
Q ss_pred CcEEEEEecc----CC-------hHHH-HHHHHhCCCeeeec--------cHHHHHHHHHcCCCCceeeeecC-CChhcH
Q 024293 60 RIRIVAVSKT----KP-------VSVI-RQVYEAGHRCFGEN--------YVQEIVEKAAQLPDDLEWHFIGN-LQSNKV 118 (269)
Q Consensus 60 ~~~l~aVvKa----hg-------~~~i-~~l~~~G~~~fgva--------~i~EA~~lr~~i~~~I~~~~lG~-~~~~~~ 118 (269)
++.++|=+|- .| ...+ +.+.+.|++++.+. .++.....++....||. +-|. ..+..+
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~--~~~~i~~~~~v 87 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVL--RKDFIIDPYQI 87 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEE--ECCeecCHHHH
Confidence 4678888887 11 2334 56678899999996 66666666665555652 2332 344467
Q ss_pred HhHhhcCCCccEE---EeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeEEEE
Q 024293 119 KPLLAGVPNLAMV---ESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCG 195 (269)
Q Consensus 119 ~~lv~~~~~~~l~---~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~i~G 195 (269)
+.+.+. ..+.+ .+..+.+.++.+-+.+...|. .+.+.+. .++++ +.+. .+ +..+.|
T Consensus 88 ~~~~~~--Gad~v~l~~~~~~~~~~~~~~~~~~~~g~---~~~v~v~----------~~~e~----~~~~-~~-g~~~i~ 146 (217)
T cd00331 88 YEARAA--GADAVLLIVAALDDEQLKELYELARELGM---EVLVEVH----------DEEEL----ERAL-AL-GAKIIG 146 (217)
T ss_pred HHHHHc--CCCEEEEeeccCCHHHHHHHHHHHHHcCC---eEEEEEC----------CHHHH----HHHH-Hc-CCCEEE
Confidence 766531 23433 222344666666666665554 3333332 22332 3233 32 233444
Q ss_pred eEeeCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCcceee-cCCcc--CHHHHHHcCCCeeeeChhhhCC
Q 024293 196 LMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLS-MGMSG--DFELAIEMGSTNVRIGSTIFGA 262 (269)
Q Consensus 196 lmTH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS-~G~s~--~~~~~~~~~~~~VR~G~alyG~ 262 (269)
+. +.+.......+..+ .++.+. ++...+.+. .|-+. +.......|.+-|=+|++||..
T Consensus 147 ~t---~~~~~~~~~~~~~~----~~l~~~--~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~ 207 (217)
T cd00331 147 IN---NRDLKTFEVDLNTT----ERLAPL--IPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRA 207 (217)
T ss_pred Ee---CCCccccCcCHHHH----HHHHHh--CCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 32 21111111112222 234432 111124454 44332 4444457799999999999964
No 101
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=20.34 E-value=6e+02 Score=22.40 Aligned_cols=138 Identities=14% Similarity=0.177 Sum_probs=71.5
Q ss_pred CceeeeecCCChhcHHhHhhcCCCccEE-EeeCcH-HHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHH
Q 024293 104 DLEWHFIGNLQSNKVKPLLAGVPNLAMV-ESVDNE-KIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELV 181 (269)
Q Consensus 104 ~I~~~~lG~~~~~~~~~lv~~~~~~~l~-~~v~s~-~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~ 181 (269)
++-.|++-.-+...++.+++. ..+++ .=.+.. ....++-+..++.|. +.-+-|.-+|- .+.+..++
T Consensus 61 ~~DvHLMv~~P~~~i~~~~~a--Gad~it~H~Ea~~~~~~~~i~~Ik~~G~-kaGlalnP~T~---------~~~l~~~l 128 (229)
T PRK09722 61 PLDVHLMVTDPQDYIDQLADA--GADFITLHPETINGQAFRLIDEIRRAGM-KVGLVLNPETP---------VESIKYYI 128 (229)
T ss_pred CeEEEEEecCHHHHHHHHHHc--CCCEEEECccCCcchHHHHHHHHHHcCC-CEEEEeCCCCC---------HHHHHHHH
Confidence 333366544344555555521 23432 222211 123334345566666 55554433332 24444333
Q ss_pred HHHHhcCCCeEEEEeEeeCC-C-CCCCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCc-cCHHHHHHcCCCeeeeCh-
Q 024293 182 KHVSQNCPNLEFCGLMTIGM-P-DYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS-GDFELAIEMGSTNVRIGS- 257 (269)
Q Consensus 182 ~~i~~~~~~L~i~GlmTH~a-~-~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s-~~~~~~~~~~~~~VR~G~- 257 (269)
.. +...=+||.-+ . +..+....+++..++.+.+.+ .|++. ...+-.|-+ .+.+...+.|.|.+=.|+
T Consensus 129 ~~-------vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~-~~~~~-~IeVDGGI~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 129 HL-------LDKITVMTVDPGFAGQPFIPEMLDKIAELKALRER-NGLEY-LIEVDGSCNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred Hh-------cCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHh-cCCCe-EEEEECCCCHHHHHHHHHcCCCEEEEChH
Confidence 33 34555788766 3 335667788888887766554 35432 012234433 234444578999999995
Q ss_pred hhhCC
Q 024293 258 TIFGA 262 (269)
Q Consensus 258 alyG~ 262 (269)
+||+.
T Consensus 200 ~iF~~ 204 (229)
T PRK09722 200 GLFNL 204 (229)
T ss_pred HHcCC
Confidence 59984
No 102
>PTZ00154 40S ribosomal protein S17; Provisional
Probab=20.31 E-value=44 Score=27.07 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=13.7
Q ss_pred hhHHHHHhhhhhhhHHH
Q 024293 5 EHEEERKRRENHINEQV 21 (269)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (269)
-+||||.||.|.+-|--
T Consensus 73 lqeeererr~~yvPe~s 89 (134)
T PTZ00154 73 LQEEERERRMDYVPEKS 89 (134)
T ss_pred hhHHHHHHhhccCCcch
Confidence 36899999999987654
No 103
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=20.19 E-value=5.6e+02 Score=21.99 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=46.3
Q ss_pred CChHHHHHHHHhCCCee-----------------------eeccHHHHHHHHHcCCCCceeeee-cCCChhcHHhHhhcC
Q 024293 70 KPVSVIRQVYEAGHRCF-----------------------GENYVQEIVEKAAQLPDDLEWHFI-GNLQSNKVKPLLAGV 125 (269)
Q Consensus 70 hg~~~i~~l~~~G~~~f-----------------------gva~i~EA~~lr~~i~~~I~~~~l-G~~~~~~~~~lv~~~ 125 (269)
.|+..+..|..+|+..| |-.+.+.+.+....+.+.+.+... ..+..+.+..++
T Consensus 39 lGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~--- 115 (212)
T PRK08644 39 LGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKIDEDNIEELF--- 115 (212)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeecCHHHHHHHH---
Confidence 55555566777777633 344555444433334333322222 344455555555
Q ss_pred CCccEEE-eeCcHHHHHHHHHHHHhc-CC
Q 024293 126 PNLAMVE-SVDNEKIAGRLNRMVETM-GR 152 (269)
Q Consensus 126 ~~~~l~~-~v~s~~~a~~L~~~a~~~-~~ 152 (269)
+.+|++. .+|+.+.-..+++.+.+. ++
T Consensus 116 ~~~DvVI~a~D~~~~r~~l~~~~~~~~~~ 144 (212)
T PRK08644 116 KDCDIVVEAFDNAETKAMLVETVLEHPGK 144 (212)
T ss_pred cCCCEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 4688776 668998777788888876 65
Done!