Query 024293
Match_columns 269
No_of_seqs 165 out of 1194
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 05:44:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sy1_A UPF0001 protein YGGS; e 100.0 5.4E-53 1.8E-57 374.9 23.3 226 35-268 4-235 (245)
2 3r79_A Uncharacterized protein 100.0 6.8E-53 2.3E-57 373.8 21.7 217 35-265 5-224 (244)
3 1ct5_A Protein (yeast hypothet 100.0 4.4E-50 1.5E-54 358.4 26.3 226 35-266 13-250 (256)
4 3cpg_A Uncharacterized protein 100.0 2.4E-43 8.1E-48 318.6 28.4 226 36-266 25-274 (282)
5 4ecl_A Serine racemase, vantg; 100.0 1.3E-39 4.5E-44 305.0 20.9 208 31-266 11-231 (374)
6 4a3q_A Alanine racemase 1; iso 100.0 1E-39 3.4E-44 306.5 18.3 207 32-265 14-230 (382)
7 3e5p_A Alanine racemase; ALR, 100.0 1.4E-39 4.9E-44 304.5 16.5 209 32-266 14-234 (371)
8 3mub_A Alanine racemase; alpha 100.0 1.8E-38 6.1E-43 296.7 20.9 206 32-266 14-230 (367)
9 3kw3_A Alanine racemase; niaid 100.0 1.6E-38 5.5E-43 297.8 18.7 206 32-266 26-242 (376)
10 3hur_A Alanine racemase; struc 100.0 4.5E-38 1.5E-42 296.3 20.2 204 32-266 15-236 (395)
11 2vd8_A Alanine racemase; pyrid 100.0 1E-37 3.4E-42 293.4 22.4 211 31-265 16-237 (391)
12 1xfc_A Alanine racemase; alpha 100.0 4.8E-37 1.6E-41 287.9 23.8 211 31-265 16-239 (384)
13 1vfs_A Alanine racemase; TIM-b 100.0 3.9E-37 1.3E-41 288.8 22.4 211 31-265 12-235 (386)
14 1bd0_A Alanine racemase; isome 100.0 4.1E-37 1.4E-41 289.1 22.2 211 31-265 12-230 (388)
15 3llx_A Predicted amino acid al 100.0 6.5E-37 2.2E-41 286.5 14.2 212 32-265 20-245 (376)
16 2dy3_A Alanine racemase; alpha 100.0 1.6E-35 5.5E-40 275.1 21.4 208 31-265 8-225 (361)
17 3gwq_A D-serine deaminase; str 100.0 1.2E-35 4.1E-40 282.5 20.8 216 32-263 52-285 (426)
18 3co8_A Alanine racemase; prote 100.0 5E-35 1.7E-39 274.1 21.1 205 31-265 14-233 (380)
19 2rjg_A Alanine racemase; alpha 100.0 2.6E-35 9E-40 276.0 17.5 204 31-266 28-241 (379)
20 1rcq_A Catabolic alanine racem 100.0 1.8E-34 6.1E-39 267.8 20.0 202 31-265 8-219 (357)
21 3anu_A D-serine dehydratase; P 100.0 5.3E-34 1.8E-38 265.9 12.6 214 32-264 18-249 (376)
22 2p3e_A Diaminopimelate decarbo 100.0 1E-30 3.6E-35 247.1 16.5 210 31-264 39-276 (420)
23 1twi_A Diaminopimelate decarbo 99.9 1.2E-25 4.3E-30 213.2 19.8 217 31-260 35-278 (434)
24 2qgh_A Diaminopimelate decarbo 99.9 3.6E-25 1.2E-29 209.9 19.6 209 32-261 39-273 (425)
25 2j66_A BTRK, decarboxylase; bu 99.9 2E-25 6.8E-30 211.5 15.6 209 32-261 23-257 (428)
26 2o0t_A Diaminopimelate decarbo 99.9 2E-24 7E-29 207.2 14.5 213 31-262 47-294 (467)
27 2nva_A Arginine decarboxylase, 99.9 2E-24 6.9E-29 201.1 13.9 200 31-260 22-241 (372)
28 2plj_A Lysine/ornithine decarb 99.9 2.6E-24 8.9E-29 203.9 13.3 203 32-262 61-283 (419)
29 2yxx_A Diaminopimelate decarbo 99.9 1.8E-23 6.1E-28 195.6 8.0 198 31-261 18-241 (386)
30 1f3t_A ODC, ornithine decarbox 99.9 1.9E-22 6.7E-27 191.2 15.2 204 32-262 44-264 (425)
31 3vab_A Diaminopimelate decarbo 99.9 1.4E-21 4.8E-26 186.5 20.4 186 32-238 55-260 (443)
32 3n2b_A Diaminopimelate decarbo 99.9 1.6E-21 5.4E-26 186.0 19.8 187 32-239 58-264 (441)
33 3btn_A Antizyme inhibitor 1; T 99.9 6E-21 2.1E-25 182.3 16.1 201 32-260 44-259 (448)
34 2oo0_A ODC, ornithine decarbox 99.8 1.9E-20 6.5E-25 179.9 15.8 204 32-262 54-274 (471)
35 1knw_A Diaminopimelate decarbo 99.8 7E-20 2.4E-24 173.6 13.3 180 31-239 31-227 (425)
36 7odc_A Protein (ornithine deca 99.8 9.8E-19 3.3E-23 165.9 18.0 179 32-238 44-236 (424)
37 3nzp_A Arginine decarboxylase; 99.7 3.6E-15 1.2E-19 147.1 22.6 198 32-237 51-272 (619)
38 3nzq_A ADC, biosynthetic argin 99.7 4.4E-15 1.5E-19 147.4 21.4 200 32-238 92-311 (666)
39 3n2o_A ADC, biosynthetic argin 99.6 1.7E-14 5.7E-19 142.9 20.3 201 32-238 70-294 (648)
40 3mt1_A Putative carboxynorsper 99.5 3.5E-14 1.2E-18 132.0 10.0 180 32-238 10-198 (365)
41 3n29_A Carboxynorspermidine de 99.4 4.2E-13 1.4E-17 127.0 11.5 174 32-238 50-237 (418)
42 1tqj_A Ribulose-phosphate 3-ep 90.1 3 0.0001 35.4 11.0 167 73-262 21-207 (230)
43 3inp_A D-ribulose-phosphate 3- 77.6 27 0.00091 30.0 11.3 170 73-263 44-230 (246)
44 1h1y_A D-ribulose-5-phosphate 75.3 34 0.0012 28.4 12.4 177 62-262 8-207 (228)
45 3ctl_A D-allulose-6-phosphate 75.2 31 0.001 29.2 11.0 146 96-262 51-202 (231)
46 1x7f_A Outer surface protein; 65.2 7.1 0.00024 36.0 4.9 97 156-256 17-123 (385)
47 1tqx_A D-ribulose-5-phosphate 61.0 74 0.0025 26.7 11.0 164 73-262 22-207 (227)
48 1zud_1 Adenylyltransferase THI 55.5 44 0.0015 28.3 8.1 80 70-152 39-144 (251)
49 3cu2_A Ribulose-5-phosphate 3- 46.4 41 0.0014 28.5 6.3 71 189-262 147-223 (237)
50 1jw9_B Molybdopterin biosynthe 31.8 1.9E+02 0.0063 24.2 8.2 80 70-152 42-147 (249)
51 3ctl_A D-allulose-6-phosphate 30.6 2.3E+02 0.008 23.5 9.9 117 61-195 58-195 (231)
52 3o63_A Probable thiamine-phosp 30.0 2.3E+02 0.0079 23.8 8.5 61 62-123 136-210 (243)
53 3kru_A NADH:flavin oxidoreduct 26.9 3E+02 0.01 24.3 9.1 107 143-262 200-313 (343)
54 3epw_A IAG-nucleoside hydrolas 25.4 1.4E+02 0.0048 26.5 6.5 42 150-203 10-52 (338)
55 2ftp_A Hydroxymethylglutaryl-C 22.3 3.7E+02 0.013 23.0 9.5 57 135-200 156-212 (302)
56 1nvm_A HOA, 4-hydroxy-2-oxoval 22.2 4E+02 0.014 23.3 14.2 66 114-188 95-161 (345)
57 1vyr_A Pentaerythritol tetrani 20.9 2.1E+02 0.0073 25.5 6.9 93 36-131 207-320 (364)
58 2xvc_A ESCRT-III, SSO0910; cel 20.6 71 0.0024 21.2 2.6 27 168-195 33-59 (59)
No 1
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=100.00 E-value=5.4e-53 Score=374.94 Aligned_cols=226 Identities=40% Similarity=0.543 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHHHHHHHhCCCeeeeccHHHHHHHHHcCC----CCceeeee
Q 024293 35 VAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP----DDLEWHFI 110 (269)
Q Consensus 35 ~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i~~l~~~G~~~fgva~i~EA~~lr~~i~----~~I~~~~l 110 (269)
.|++|++.+++++.++|+.+||.|++++|+||||+||++.++.++++|+++||||++|||.+||+.+. ++|.||+|
T Consensus 4 ~i~~nl~~i~~~i~~a~~~~~r~~~~v~l~AV~Kahg~~~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~~i~w~~i 83 (245)
T 3sy1_A 4 DIAHNLAQVRDKISAAATRCGRSPEEITLVAVSKTKPASAIAEAIDAGQRQFSEHYVQEGVDKIRHFQELGVTGLEWNFA 83 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECTTCCHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCCCHHHHHHHHHcCCCEEEEecHHHHHHHHHhhhhccCCCeEEeec
Confidence 58999999999999999999999999999999999999888889999999999999999999998854 37899999
Q ss_pred cCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCC
Q 024293 111 GNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPN 190 (269)
Q Consensus 111 G~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~ 190 (269)
|++|+++++.++ +.++++++|||+++++.|++.+.+.++ +++|||+||||+||+|+||.|+++.++++.+. .+|+
T Consensus 84 G~lq~nk~~~~~---~~~~~i~sVds~~~a~~l~~~a~~~~~-~~~V~lqVntG~e~~R~G~~~ee~~~l~~~i~-~~~~ 158 (245)
T 3sy1_A 84 GPLQSNKSRLVA---EHFDWCITIDRLRIATRLNDQRPAELP-PLNVLIQINISDENSKSGIQLAELDELAAAVA-ELPR 158 (245)
T ss_dssp SCCCGGGHHHHH---HHCSEEEEECCHHHHHHHHHHSCTTSC-CEEEEEEBCCSCTTCCSSBCGGGHHHHHHHHT-TCTT
T ss_pred CCCChHHHHHHH---HHCCEEEecCCHHHHHHHHHHHHHcCC-CceEEEEEECCCCcCCcCCCHHHHHHHHHHHH-cCCC
Confidence 999999999988 358999999999999999999998888 99999999999999999999999999999998 9999
Q ss_pred eEEEEeEeeCCCCCC--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhhCCCCCCCC
Q 024293 191 LEFCGLMTIGMPDYT--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 268 (269)
Q Consensus 191 L~i~GlmTH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~alyG~~p~~~~ 268 (269)
|++.|||||++..++ .....|.++.++++.|++. +.+ +..+|||||+||+.++++|+|+||||++|||+++|..+
T Consensus 159 l~l~Glmt~~~~~~d~~~~~~~f~~l~~l~~~l~~~-~~~--~~~LSmGmS~d~~~Ai~~G~t~vRvGt~iFg~r~y~~~ 235 (245)
T 3sy1_A 159 LRLRGLSAIPAPESEYVRQFEVARQMAVAFAGLKTR-YPH--IDTLALGQSDDMEAAIAAGSTMVAIGTAIFGARDYSKK 235 (245)
T ss_dssp EEEEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT-STT--CCEEECCCSTTHHHHHHHTCCEEEESHHHHCC------
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHh-CCC--CCEEeccCcHhHHHHHHcCCCEEECchHHhCCCCCCCC
Confidence 999999999998665 4567899999999999875 443 48899999999999999999999999999999999653
No 2
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=100.00 E-value=6.8e-53 Score=373.75 Aligned_cols=217 Identities=42% Similarity=0.583 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHHHHHHHhCCCeeeeccHHHHHHHHHcCC---CCceeeeec
Q 024293 35 VAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP---DDLEWHFIG 111 (269)
Q Consensus 35 ~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i~~l~~~G~~~fgva~i~EA~~lr~~i~---~~I~~~~lG 111 (269)
.|..|++.+++++.++|+.+||.|++++|+||||+||++.++.++++|++.||||++|||.+||+.+. ++|.||+||
T Consensus 5 ~i~~nl~~v~~~i~~a~~~~~r~~~~v~l~AVvKahga~~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~i~wh~iG 84 (244)
T 3r79_A 5 EIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPALKEKTSDIELHLIG 84 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGSEEEEECTTCCHHHHHHHHHTTCCEEEESCHHHHHHHHHHHHHHSTTCEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcCHHHHHHHHHCCCCEEEEeeHHHHHHHHHhccccCCCeEEEecC
Confidence 48899999999999999999999889999999999999888889999999999999999999998854 468999999
Q ss_pred CCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCe
Q 024293 112 NLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNL 191 (269)
Q Consensus 112 ~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L 191 (269)
++|+++++.++ +.++++++|||+++++.|++.|.+.++ +++||||||||+||+|+||.|+++.++++.+. .+|+|
T Consensus 85 ~lq~nk~~~~v---~~~~~i~sVds~~~a~~L~~~a~~~g~-~~~V~LqVdtG~e~~R~Gv~~ee~~~l~~~i~-~l~~L 159 (244)
T 3r79_A 85 PLQSNKAADAV---ALFDVVESIDREKIARALSEECARQGR-SLRFYVQVNTGLEPQKAGIDPRETVAFVAFCR-DELKL 159 (244)
T ss_dssp CCCGGGHHHHH---HHCSEEEEECSHHHHHHHHHHHHHHTC-CCEEEEEBCTTCCTTSCSBCHHHHHHHHHHHH-HTSCC
T ss_pred CCCHHHHHHHH---HHCCEEEeeCCHHHHHHHHHHHHHcCC-CceEEEEEECCCCcCCCCCCHHHHHHHHHHHH-cCCCC
Confidence 99999999998 358999999999999999999999998 99999999999999999999999999999999 99999
Q ss_pred EEEEeEeeCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhhCCCCC
Q 024293 192 EFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 265 (269)
Q Consensus 192 ~i~GlmTH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~alyG~~p~ 265 (269)
+++|||||+++++++. .+|..|.++++.+ + ...+|||||+||+.++++|+|+||||++|||.+||
T Consensus 160 ~l~GlmTh~a~~dd~~-~~f~~l~~l~~~l----~----~~~lSmGmS~d~~~Ai~~G~t~vRvGtaIfg~r~~ 224 (244)
T 3r79_A 160 PVEGLMCIPPAEENPG-PHFALLAKLAGQC----G----LEKLSMGMSGDFETAVEFGATSVRVGSAIFGSRAE 224 (244)
T ss_dssp CCCEEECCCCTTSCSH-HHHHHHHHHHHHH----T----CCEEECCCTTTHHHHHHTTCSEEEECHHHHCCHHH
T ss_pred EEEEEEecCCCCCCHH-HHHHHHHHHHHhC----C----CCEEEeecchhHHHHHHcCCCEEEeeHHHhCCCch
Confidence 9999999999877665 6888888766543 2 26799999999999999999999999999999987
No 3
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=100.00 E-value=4.4e-50 Score=358.41 Aligned_cols=226 Identities=41% Similarity=0.623 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC--CCCcEEEEEeccCChHHHHHHHHhCCCeeeeccHHHHHHHHHcCCCCceeeeecC
Q 024293 35 VAATALRSVIQRVHQAAERSSRP--PDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGN 112 (269)
Q Consensus 35 ~l~~Nl~~i~~~i~~~~~~~~~~--~~~~~l~aVvKahg~~~i~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~lG~ 112 (269)
.|++|+..+++++..+++.+||. +++++|+||||+||++.++.++++|+++||||+++||++||+++..+|.||++|+
T Consensus 13 ~i~~nl~~v~~~i~~~~~~~~r~~~~~~v~l~aVvK~hg~~~i~~~~~aG~~~fgva~vqEa~~~r~~~~~~l~~h~iG~ 92 (256)
T 1ct5_A 13 QLIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGG 92 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-------CCEEEEECTTSCHHHHHHHHHHTCCEEEECCHHHHHHHHHHSCTTCEEEECSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEECCCCHHHHHHHHHcCCCEEEEEcHHHHHHHHHhcccCeeEeecCC
Confidence 48999999999999999999997 6789999999999998888889999999999999999999988766799999999
Q ss_pred CChhcHHhH--hhcCCCccEEEeeCcHHHHHHHHHHHHhcCCC--ceeEEEEEeCCCCCCccCCCh-hhHHHHHHHHH-h
Q 024293 113 LQSNKVKPL--LAGVPNLAMVESVDNEKIAGRLNRMVETMGRK--PLKVLVQVNTSGEESKSGVEP-SGCLELVKHVS-Q 186 (269)
Q Consensus 113 ~~~~~~~~l--v~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~--~i~V~lkIDtG~em~R~G~~~-ee~~~~~~~i~-~ 186 (269)
+|+++++.+ + ..++++++|||+++++.|++.+.+.++. +++||||||||+||+|+||.| +++.++++.+. .
T Consensus 93 lq~nk~~~~~~~---~~~~l~~sVds~~~a~~l~~~a~~~~~~~~~l~V~lqVdtG~e~~R~G~~~~~e~~~l~~~i~~~ 169 (256)
T 1ct5_A 93 LQTNKCKDLAKV---PNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSE 169 (256)
T ss_dssp CCGGGHHHHHHC---TTEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCCSSSCCSSSBCCHHHHHHHHHHHHST
T ss_pred CCHHHHHHHhcc---cccCEEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEECCCCCCCcCcCchHHHHHHHHHHHHc
Confidence 999999999 5 4689999999999999999999887631 589999999999999999999 99999999884 1
Q ss_pred cCCCeEEEEeEeeC--CCCCC--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhhCC
Q 024293 187 NCPNLEFCGLMTIG--MPDYT--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGA 262 (269)
Q Consensus 187 ~~~~L~i~GlmTH~--a~~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~alyG~ 262 (269)
.+|+|+++|||||+ +++++ .+..+|++|.++++.+++ ++. ++.|+|+|||+||+.+++.|+||||||++|||+
T Consensus 170 ~~~~L~l~Glmth~~~~~ad~~~~~~~~f~~~~~~~~~l~~--~~~-~~~~lS~Gms~d~~~ai~~g~t~VR~G~~lfG~ 246 (256)
T 1ct5_A 170 ECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDA--KFG-TSLKLSMGMSADFREAIRQGTAEVRIGTDIFGA 246 (256)
T ss_dssp TCCSEEEEEEECCCCCC---------HHHHHHHHHHHHHHH--HHC-CCCEEECCCTTTHHHHHHTTCSEEEESHHHHC-
T ss_pred cCCCeeEEEEEEECCcCCCCCHHHHHHHHHHHHHHHHHHHh--cCC-CCCEEEecccHhHHHHHHcCCCEEEecHHHhCC
Confidence 68999999999999 76543 456799999999998876 333 357899999999999889999999999999999
Q ss_pred CCCC
Q 024293 263 REYP 266 (269)
Q Consensus 263 ~p~~ 266 (269)
+||.
T Consensus 247 ~~~~ 250 (256)
T 1ct5_A 247 RPPK 250 (256)
T ss_dssp ----
T ss_pred CcCC
Confidence 9985
No 4
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=100.00 E-value=2.4e-43 Score=318.62 Aligned_cols=226 Identities=37% Similarity=0.584 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHHHHHHHhCCCeeeeccHHHHHHHHHcC--------------
Q 024293 36 AATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQL-------------- 101 (269)
Q Consensus 36 l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i~~l~~~G~~~fgva~i~EA~~lr~~i-------------- 101 (269)
+..|+..|++.++.+++.+++.+.+++++||+|+||...+..++++|+++|||++++||..+|+++
T Consensus 25 l~idl~ai~~Ni~~~~~~~~~~~~~~~l~avvK~hg~~~va~~~~~G~~~f~va~~~Ea~~lr~~l~~~~~~~g~~~~~~ 104 (282)
T 3cpg_A 25 ITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIMAAIDAGVRMIGENRPQEVTAKAEGLARRCAERGFSLGVA 104 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTSSEEEEECTTCCHHHHHHHHHTTCCCEEESCHHHHHHHHHHHHHHHHHTTEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCCHHHHHHHHHCCCCEEEEEeHHHHHHHHHhhhhhccccccccccc
Confidence 444444444444444445566556899999999999988855588999999999999999999872
Q ss_pred -------CCCceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCCh
Q 024293 102 -------PDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP 174 (269)
Q Consensus 102 -------~~~I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ 174 (269)
...|.|+++|+.++++++.++ +.++++++|||+++++.|++.+.+.++ +++|||+||||.+.+|+||.|
T Consensus 105 G~~~d~~~~~i~~~~iG~~~~~~~~~~~---~~~~l~~~Vds~~~l~~L~~~a~~~~~-~~~V~lkVdtGme~~R~G~~~ 180 (282)
T 3cpg_A 105 GAAPDAAAEHIPFHLIGQLQSNKIGKVL---PVVDTIESVDSIDLAEKISRRAVARGI-TVGVLLEVNESGEESKSGCDP 180 (282)
T ss_dssp ------CCEEECEEECSCCCGGGHHHHT---TTCSEEEEECCHHHHHHHHHHHHHHTC-CEEEEEEBCCSSCTTSSSBCG
T ss_pred cccccccccceeeeecChhHHHHHHHHH---HhCCEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEEECCCCCCCCCcCH
Confidence 224778899999999999988 358999999999999999999988888 999999999992229999999
Q ss_pred hhHHHHHHHHHhcCCCeEEEEeEeeCCCCCCC--cHHHHHHHHHHHHHHHHHcCCC-CCcceeecCCccCHHHHHHcCCC
Q 024293 175 SGCLELVKHVSQNCPNLEFCGLMTIGMPDYTS--TPENFKTLAKCRSEVCKALGIP-EEQCDLSMGMSGDFELAIEMGST 251 (269)
Q Consensus 175 ee~~~~~~~i~~~~~~L~i~GlmTH~a~~~~~--~~~~~~~~~~~~~~l~~~~g~~-~~~~~lS~G~s~~~~~~~~~~~~ 251 (269)
+++.++++.+. .+|+|++.|||||+++.+++ ...+|+++.++++.+++.+|+. .+..++|+|||++|+.+++.++|
T Consensus 181 ee~~~l~~~i~-~~~~l~l~Gl~th~~~~~~~~~~~~~~~~l~~~~~~l~~~~g~~~~~~~~lS~g~S~~~~~~~~~~~~ 259 (282)
T 3cpg_A 181 AHAIRIAQKIG-TLDGIELQGLMTIGAHVHDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSMGMTGDMELAIAEGST 259 (282)
T ss_dssp GGHHHHHHHHH-TCTTEEEEEEECCCCCSSCHHHHHHHHHHHHHHHHHHHHHCCTTCTTCCEEECCCTTTHHHHHHTTCS
T ss_pred HHHHHHHHHHH-hCCCceEEeEEEECCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCEEEecCcHhHHHHHHcCCC
Confidence 99999999999 99999999999999986653 3457888888888887643653 23467899999999988889999
Q ss_pred eeeeChhhhCCCCCC
Q 024293 252 NVRIGSTIFGAREYP 266 (269)
Q Consensus 252 ~VR~G~alyG~~p~~ 266 (269)
|||||++|||++|+.
T Consensus 260 ~VR~G~~lyG~~p~~ 274 (282)
T 3cpg_A 260 IVRVGTAIFGERAFI 274 (282)
T ss_dssp EEEESTTTC------
T ss_pred EEEeccHHhCCCCCC
Confidence 999999999999974
No 5
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=100.00 E-value=1.3e-39 Score=305.04 Aligned_cols=208 Identities=12% Similarity=0.174 Sum_probs=184.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCC
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDD 104 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~ 104 (269)
.|+++|++|++.+++.+ +++++++||+|+ ||+..+ +.+.++|++.|+|++++||..+|++ +..+
T Consensus 11 Idl~al~~N~~~l~~~~----------~~~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~~~~ 80 (374)
T 4ecl_A 11 INLNNLEHNVNTLQKAM----------SPKCELMAVVKAEAYGHGMYEVTTYLEQIGVSSFAVATIDEGIRLRKYGISSE 80 (374)
T ss_dssp ECHHHHHHHHHHHHHTS----------CTTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSE
T ss_pred EcHHHHHHHHHHHHHhc----------CCCCEEEEEEccCccCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHhcCCCCC
Confidence 39999999999999987 567899999999 999887 6778999999999999999999998 4456
Q ss_pred ceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHH
Q 024293 105 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV 184 (269)
Q Consensus 105 I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i 184 (269)
| +++|++++++++.++ .++++++|+|++++++|++. ++ +++|||||||| |+|+||. +++.++++.+
T Consensus 81 i--lvlg~~~~~~~~~~~----~~~i~~~v~s~~~l~~l~~~----~~-~~~v~lkvdtG--m~R~G~~-~e~~~~~~~i 146 (374)
T 4ecl_A 81 I--LILGYTSPSRAKELC----KYELTQTLIDYRYSLLLNKQ----GY-DIKAHIKIDTG--MHRLGFS-TEDKDKILAA 146 (374)
T ss_dssp E--EECSCCCGGGHHHHH----HTTCEEEECCHHHHHHHHTT----CC-CEEEEEEEESS--SCSSSEE-SSCHHHHHHH
T ss_pred E--EEEeCCCHHHHHHHH----HCCCEEEECCHHHHHHHHhc----CC-CccEEEEEcCC--CCcCccC-HHHHHHHHHH
Confidence 6 567999999999998 37899999999999999877 67 89999999999 9999999 8899999999
Q ss_pred HhcCCCeEEEEeEeeCCCCCC-------CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeCh
Q 024293 185 SQNCPNLEFCGLMTIGMPDYT-------STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGS 257 (269)
Q Consensus 185 ~~~~~~L~i~GlmTH~a~~~~-------~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~ 257 (269)
. .+|+|++.||||||+++++ ++..|+++|.++.+.+++ .|+++ ..+|+|||.++...++.++||||||+
T Consensus 147 ~-~~~~l~l~Gl~tH~~~ad~~~~~~~~~~~~q~~~f~~~~~~l~~-~g~~~--~~~~~~nSa~~~~~~~~~~d~vR~Gi 222 (374)
T 4ecl_A 147 F-SLKHIKVAGIFTHLCAADSLEENDVAFTNKQIGSFYKVLDWLKS-SGLNI--PKVHIQSSYGLLNYPELECDYIRVGV 222 (374)
T ss_dssp T-TCTTEEEEEEECCCSCTTCCSHHHHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCCHHHHHHCTTCCCSEEEESG
T ss_pred H-hCCCceEEEEEEECCccCcccCcCcHHHHHHHHHHHHHHHHHHH-cCCCC--CeEEecCCchhhcCcccCCCEEcccc
Confidence 8 9999999999999998655 235688999999888887 48865 67899999998877788999999999
Q ss_pred hhhCCCCCC
Q 024293 258 TIFGAREYP 266 (269)
Q Consensus 258 alyG~~p~~ 266 (269)
+|||.+|+.
T Consensus 223 ~lyG~~p~~ 231 (374)
T 4ecl_A 223 ALYGVLSST 231 (374)
T ss_dssp GGGTCCSSS
T ss_pred eeeCCCCcc
Confidence 999999874
No 6
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=100.00 E-value=1e-39 Score=306.54 Aligned_cols=207 Identities=15% Similarity=0.202 Sum_probs=172.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCCc
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDDL 105 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I 105 (269)
|+++|++|++ +++.+ +++++++||||+ ||+..+ +.+.++|++.|+|++++||+.+|++ +..+|
T Consensus 14 dl~al~~N~~-l~~~~----------~~~~~l~aVvKAnaYGhg~~~va~~l~~~G~~~f~Va~~~Ea~~lr~aGi~~~i 82 (382)
T 4a3q_A 14 DLNAVASNFK-VFSTL----------HPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHGITAKI 82 (382)
T ss_dssp EHHHHHHHHH-HHHHH----------CTTSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHTTTCCSEE
T ss_pred EHHHHHHHHH-HHhhc----------CCCCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhCCCCCCE
Confidence 9999999999 99998 667899999999 999887 6788999999999999999999988 55566
Q ss_pred eeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhh-HHHHHHHH
Q 024293 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSG-CLELVKHV 184 (269)
Q Consensus 106 ~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee-~~~~~~~i 184 (269)
+++|++++++++.++ .++++++|+|++++++|++.+.+.++.+++|||||||| |+|+||.|++ +.++++.+
T Consensus 83 --lvlg~~~~~~~~~~~----~~~i~~~V~s~~~l~~l~~~a~~~~~~~~~V~lkvDtG--m~R~G~~~~e~~~~~~~~i 154 (382)
T 4a3q_A 83 --LVLGVLPAKDIDKAI----QHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKLDTG--MGRLGIKDTNTYQEVIEII 154 (382)
T ss_dssp --EECSCCCGGGHHHHH----HTTCBEEECCHHHHHHHHHTCCTTCCSCEEEEEEBCSS--SSSSSBCCHHHHHHHHHHH
T ss_pred --EEEeCCCHHHHHHHH----HcCCEEEECCHHHHHHHHHHHHHcCCCceeEEEEECCC--CCcCCCChHHHHHHHHHHH
Confidence 677999999999998 47899999999999999998877663169999999999 9999999976 99999999
Q ss_pred HhcCCCeEEEEeEeeCCCCCCC---cHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhhC
Q 024293 185 SQNCPNLEFCGLMTIGMPDYTS---TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFG 261 (269)
Q Consensus 185 ~~~~~~L~i~GlmTH~a~~~~~---~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~alyG 261 (269)
. .+|+|++.||||||+++|++ +..|+++|.++.+.+ +.+ ..+|++||......++.++||||||++|||
T Consensus 155 ~-~~~~l~l~Gl~tH~a~ad~~~~~~~~Q~~~F~~~~~~l-----~~~--~~~h~aNSa~~l~~~~~~~d~vR~Gi~lYG 226 (382)
T 4a3q_A 155 Q-QYEQLVFEGVFTHFACADEPGDMTTEQYQRFKDMVNEA-----IKP--EYIHCQNSAGSLLMDCQFCNAIRPGISLYG 226 (382)
T ss_dssp H-HCTTEEEEEEECCC-------CHHHHHHHHHHHHHTTS-----CCC--SEEECCCHHHHHHCCCTTCSEECCCGGGGT
T ss_pred H-hCCCceEEEEEEECcCCCCCCchHHHHHHHHHHHHHhh-----CCC--CcEEEEcChhhhcCcccCCCeEeecceeEC
Confidence 8 99999999999999986643 456777776644432 232 557888887766656779999999999999
Q ss_pred CCCC
Q 024293 262 AREY 265 (269)
Q Consensus 262 ~~p~ 265 (269)
.+|.
T Consensus 227 ~~p~ 230 (382)
T 4a3q_A 227 YYPS 230 (382)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 9886
No 7
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=100.00 E-value=1.4e-39 Score=304.48 Aligned_cols=209 Identities=13% Similarity=0.165 Sum_probs=180.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCCc
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDDL 105 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I 105 (269)
|+++|++|++.+++.+ +++++++||+|+ ||+..+ +.+.++|++.|+|++++||..+|++ +..+|
T Consensus 14 dl~al~~N~~~l~~~~----------~~~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~~~~I 83 (371)
T 3e5p_A 14 DTQAITENVQKECQRL----------PEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAGVQDPI 83 (371)
T ss_dssp CHHHHHHHHHHHHHSS----------CSSSEEEEECHHHHHTTCHHHHHHHHHHTTCCCEEESSHHHHHHHHTTTCCSCE
T ss_pred EHHHHHHHHHHHHHhc----------CCCCEEEEEECcccccCCHHHHHHHHHHcCCCEEEEEeHHHHHHHHhcCCCCCE
Confidence 9999999999999987 567899999999 999887 6778999999999999999999988 55576
Q ss_pred eeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHH-HHHHHhcCCCceeEEEEEeCCCCCCccCCCh-hhHHHHHHH
Q 024293 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRL-NRMVETMGRKPLKVLVQVNTSGEESKSGVEP-SGCLELVKH 183 (269)
Q Consensus 106 ~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L-~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~-ee~~~~~~~ 183 (269)
+++|++++++++.++ .++++++|+|+++++.| ++.|.+.++ +++|||||||| |+|+||.| +++.++++.
T Consensus 84 --lvlg~~~~~~~~~~~----~~~i~~~V~s~~~l~~l~~~~a~~~~~-~~~V~lkvdtG--m~R~G~~~~ee~~~~~~~ 154 (371)
T 3e5p_A 84 --LILSVVDLAYVPLLI----QYDLSVTVATQEWLEAALQQLTPESNT-PLRVHLKVDTG--MGRIGFLTPEETKQAVRF 154 (371)
T ss_dssp --EEEEECCGGGHHHHH----HHTCEEEECCHHHHHHHHHHHCSCCSC-CBCEEEEBCSS--SCSSSBCSSHHHHHHHHH
T ss_pred --EEEcCCCHHHHHHHH----HCCCEEEECCHHHHHHHHHHHHHHcCC-ceEEEEEECCC--CCcCCCCCHHHHHHHHHH
Confidence 677999999999998 47899999999999999 999988888 99999999999 99999999 999999999
Q ss_pred HHhcCCCeEEEEeEeeCCCCCCC----cHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhh
Q 024293 184 VSQNCPNLEFCGLMTIGMPDYTS----TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTI 259 (269)
Q Consensus 184 i~~~~~~L~i~GlmTH~a~~~~~----~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~al 259 (269)
+. ++|+|++.||||||+++|++ +..|+++|.++.+.+.+ .+ ..+|++||......++.++||||||++|
T Consensus 155 i~-~~~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~----~~--~~~h~~NSa~~~~~~~~~~d~vR~Gi~l 227 (371)
T 3e5p_A 155 VQ-SHKEFLWEGIFTHFSTADEIDTSYFEKQAGRFKAVLAVLEE----LP--RYVHVSNSATALWHPDVPGNMIRYGVAM 227 (371)
T ss_dssp HH-HSTTBCCCEEECCCSCTTSSCCHHHHHHHHHHHTTSSSCSC----CC--SEEECBCHHHHHHCTTSSCSEEEECGGG
T ss_pred HH-hCCCccEEEEEEEcCCCCCCCcHHHHHHHHHHHHHHHHhhh----cC--CeEEEecChhHhcCcccCCCeEeeCcee
Confidence 98 99999999999999986643 45677777665443322 12 4568888877666567899999999999
Q ss_pred hCCCCCC
Q 024293 260 FGAREYP 266 (269)
Q Consensus 260 yG~~p~~ 266 (269)
||.+|..
T Consensus 228 YG~~p~~ 234 (371)
T 3e5p_A 228 YGLNPSG 234 (371)
T ss_dssp GTCCTTT
T ss_pred ECCCccc
Confidence 9999874
No 8
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=100.00 E-value=1.8e-38 Score=296.68 Aligned_cols=206 Identities=12% Similarity=0.113 Sum_probs=177.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCCc
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDDL 105 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I 105 (269)
|+++|++|++.+++.+ +++++++||+|+ ||+..+ +.+.++ ++.|+|++++||+.+|++ +..+|
T Consensus 14 dl~al~~N~~~l~~~~----------~~~~~l~aVvKanaYGhg~~~va~~l~~~-~~~f~va~~~Ea~~lr~~G~~~~i 82 (367)
T 3mub_A 14 HLGAIRQNIQQMGAHI----------PQGTLKLAVVKANAYGHGAVAVAKAIQDD-VDGFCVSNIDEAIELRQAGLSKPI 82 (367)
T ss_dssp CHHHHHHHHHHHHHTS----------CTTCEEEEECHHHHHTTCHHHHHHHHGGG-CSEEEESSHHHHHHHHHTTCCSCE
T ss_pred eHHHHHHHHHHHHHhC----------CCCCEEEEEECcccccCCHHHHHHHHHHh-CCeEEEeEHHHHHHHHHcCCCCCE
Confidence 9999999999999987 667899999999 999888 566678 999999999999999998 55576
Q ss_pred eeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCCh-hhHHHHHHHH
Q 024293 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP-SGCLELVKHV 184 (269)
Q Consensus 106 ~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~-ee~~~~~~~i 184 (269)
+++|++++++++.++ .++++++|+|+++++.|++.+.+. + +++|||||||| |+|+||.| +++.++++.+
T Consensus 83 --lvlg~~~~~~~~~~~----~~~l~~~V~s~~~l~~l~~~a~~~-~-~~~V~lkvdtG--m~R~G~~~~ee~~~~~~~i 152 (367)
T 3mub_A 83 --LILGVSEIEAVALAK----EYDFTLTVAGLEWIQALLDKEVDL-T-GLTVHLKIDSG--MGRIGFREASEVEQAQDLL 152 (367)
T ss_dssp --EEEEECCGGGHHHHH----HTTEEEEECCHHHHHHHHHTTCCC-T-TCEEEEEECSS--CCSSSBCSHHHHHHHHHHH
T ss_pred --EEEcCCCHHHHHHHH----HcCCEEEECCHHHHHHHHHHHHhc-C-CeeEEEEECCC--CCcCCCCcHHHHHHHHHHH
Confidence 677999999999998 478999999999999999988776 7 89999999999 99999999 9999999999
Q ss_pred HhcCCCeEEEEeEeeCCCCCC----CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhh
Q 024293 185 SQNCPNLEFCGLMTIGMPDYT----STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 260 (269)
Q Consensus 185 ~~~~~~L~i~GlmTH~a~~~~----~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~aly 260 (269)
. + |+|++.||||||+++|+ ++..|+++|.++.+.+.+ .+ ..+|++||......++.++||||||++||
T Consensus 153 ~-~-~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~----~~--~~~h~~NSa~~l~~~~~~~d~vR~Gi~lY 224 (367)
T 3mub_A 153 Q-Q-HGVCVEGIFTHFATADEESDDYFNAQLERFKTILASMKE----VP--ELVHASNSATTLWHVETIFNAVRMGDAMY 224 (367)
T ss_dssp H-H-TTCEEEEEEECCSSTTSSCCHHHHHHHHHHHHHHHTCSS----CC--SEEEEECHHHHHHCGGGCCSEEEECTTTT
T ss_pred c-c-CCcEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHHhhh----cC--CeEEEecChHHhcCcccCCCeEEhhhHhh
Confidence 9 8 99999999999998664 345788888776554432 12 45677777766655678999999999999
Q ss_pred CCCCCC
Q 024293 261 GAREYP 266 (269)
Q Consensus 261 G~~p~~ 266 (269)
|.+|..
T Consensus 225 G~~p~~ 230 (367)
T 3mub_A 225 GLNPSG 230 (367)
T ss_dssp TCCTTT
T ss_pred CCCCcc
Confidence 998874
No 9
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=100.00 E-value=1.6e-38 Score=297.77 Aligned_cols=206 Identities=16% Similarity=0.186 Sum_probs=176.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHcC-C-CC
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQL-P-DD 104 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i-~-~~ 104 (269)
|+++|++|++.+++.+ ++ ++++||+|+ ||+..+ +.+.++|++.|+|++++||+.+|+++ . .+
T Consensus 26 dl~al~~N~~~l~~~~----------~~-~~l~aVvKAnaYGHG~~~va~~l~~~G~~~f~Va~~~Ea~~lr~ag~~~~~ 94 (376)
T 3kw3_A 26 DVRAIVANYRTLAQHV----------AP-TECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLPENVM 94 (376)
T ss_dssp CHHHHHHHHHHHHHHH----------TT-SEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHSCSSCE
T ss_pred cHHHHHHHHHHHHHhC----------CC-CEEEEEECCccccCCHHHHHHHHHHcCCCEEEEeEHHHHHHHHhcCCCCCC
Confidence 9999999999999998 54 899999999 999887 67889999999999999999999875 3 45
Q ss_pred ceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHH
Q 024293 105 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV 184 (269)
Q Consensus 105 I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i 184 (269)
| +++|++++++++.++ .++++++|+|++++++|++.|.+.++ +++|||||||| |+|+||.|+++.++++.+
T Consensus 95 i--lvl~~~~~~~~~~~~----~~~i~~~V~s~~~l~~l~~~a~~~~~-~~~V~lkVdtG--m~R~G~~~~e~~~l~~~i 165 (376)
T 3kw3_A 95 I--ALLNGFPHKAEEFVA----QSGIIPLLNSWSTIEDWQTLCQKKNK-KFPAIIQVDTN--MSRLGLDKKELQKLIKNP 165 (376)
T ss_dssp E--EETTCCCTTCHHHHH----HTTCEEEECSHHHHHHHHHHHHHHTC-CCEEEEEBCSS--CCSSSBCHHHHHHHHHCC
T ss_pred E--EEEeCCCHHHHHHHH----HCCCEEEECCHHHHHHHHHHHHHcCC-CeEEEEEECCC--CCcccCCHHHHHHHHHHH
Confidence 5 678888999999888 47899999999999999999998888 99999999999 999999999999999998
Q ss_pred HhcCCCeEEEEeEeeCCCCCC----CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhh
Q 024293 185 SQNCPNLEFCGLMTIGMPDYT----STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 260 (269)
Q Consensus 185 ~~~~~~L~i~GlmTH~a~~~~----~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~aly 260 (269)
. .+|+|++.||||||+++|+ ++..|+++|.++.+.+. ++ . .|++||......++.++||||||++||
T Consensus 166 ~-~~~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~---~~----~-~h~aNSa~~l~~~~~~~d~vR~Gi~lY 236 (376)
T 3kw3_A 166 T-IFEKAEIKYILSHLANGEDASHSSNNKQLAAFKRVLAQLP---TC----K-VSFANSGGIFLGSDFYFDLVRPGIALY 236 (376)
T ss_dssp T-HHHHSEEEEEECCCSSTTCTTCHHHHHHHHHHHHHHTTSC---CC----C-EECCCHHHHTTCGGGTTTEECCSGGGG
T ss_pred H-hCCCCcEEEEEEECCCCCCCCcHHHHHHHHHHHHHHhhcc---CC----C-EEEEeChhhhcCccccCCEEecChhhc
Confidence 8 8899999999999998664 24567777766544321 21 2 677777665555567999999999999
Q ss_pred CCCCCC
Q 024293 261 GAREYP 266 (269)
Q Consensus 261 G~~p~~ 266 (269)
|.+|..
T Consensus 237 G~~p~~ 242 (376)
T 3kw3_A 237 GVDPHG 242 (376)
T ss_dssp TCCTTC
T ss_pred CCCCCc
Confidence 999874
No 10
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=100.00 E-value=4.5e-38 Score=296.28 Aligned_cols=204 Identities=17% Similarity=0.180 Sum_probs=171.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHh-CCCeeeeccHHHHHHHHHc-CCCC
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEA-GHRCFGENYVQEIVEKAAQ-LPDD 104 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~-G~~~fgva~i~EA~~lr~~-i~~~ 104 (269)
|+++|++|++.+++.- ++++++||||+ ||+..+ +.+.++ |++.|||++++||++||++ +..+
T Consensus 15 dl~al~~N~~~l~~~~-----------~~~~l~aVvKAnaYGHG~~~va~~l~~~~G~~~f~Va~~~Ea~~lr~aGi~~~ 83 (395)
T 3hur_A 15 DLDAAAHNLQEIREWT-----------KAKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELRQADLTLP 83 (395)
T ss_dssp EHHHHHHHHHHHHHHH-----------TCSEEEEECCHHHHHTCHHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCCSC
T ss_pred eHHHHHHHHHHHHhcC-----------CCCEEEEEECCCccCCCHHHHHHHHHhcCCCCEEEEeeHHHHHHHHhcCCCCC
Confidence 9999999999999872 36899999999 999887 678889 9999999999999999998 5567
Q ss_pred ceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhh-HHHHHHH
Q 024293 105 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSG-CLELVKH 183 (269)
Q Consensus 105 I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee-~~~~~~~ 183 (269)
| +++|++++++++.++ .++++++|+|++++++|++. . + +++|||||||| |+|+||.|++ +.++++.
T Consensus 84 I--lvlg~~~~~~~~~~~----~~~l~~~V~s~~~l~~l~~~-~--~--~~~V~lkvDtG--m~R~G~~~~e~~~~~~~~ 150 (395)
T 3hur_A 84 I--WVLGAWDYSDLKLFI----DHDIVITIPSLAWLQNLPDF-E--G--TLKVSLAIDTG--MTRIGFDKADEISAAKKI 150 (395)
T ss_dssp E--EESSCCCGGGHHHHH----HTTEEEEECCHHHHHTCCCC-S--S--CEEEEEEBCCS--SCSSSBCCHHHHHHHHHH
T ss_pred E--EEEcCCCHHHHHHHH----HcCCEEEECCHHHHHHHHHh-c--C--CCcEEEEEcCC--CCCcCCChHHHHHHHHHH
Confidence 6 677999999999998 48999999999999999876 3 4 68999999999 9999999976 9999999
Q ss_pred HHhcCCCeEEEEeEeeCCCCCCC-------cHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHH-cC--CCee
Q 024293 184 VSQNCPNLEFCGLMTIGMPDYTS-------TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIE-MG--STNV 253 (269)
Q Consensus 184 i~~~~~~L~i~GlmTH~a~~~~~-------~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~-~~--~~~V 253 (269)
+. .+|+|+++||||||+++|++ +..|+++|.++.+. +.++ ....|++||......++ .+ +|||
T Consensus 151 i~-~~~~l~l~Gl~TH~a~ad~~~~~~~~~~~~Q~~~F~~~~~~----l~~~--~~~~h~aNSa~~l~~~~~~~~~~d~v 223 (395)
T 3hur_A 151 ID-KNPQLDLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTIN----QGFD--PSLFSMANSATCIWHHDDPRISFAAI 223 (395)
T ss_dssp HH-HCTTEEEEEEECCCTTTTSCSHHHHHHHHHHHHHHHHHHTT----SCCC--GGGEECCCHHHHHHTTTCTTSCCSEE
T ss_pred HH-hCCCceEEEEEEeCcCCCCCCCcchHHHHHHHHHHHHHHHh----ccCC--CCeEEEcCCHHHhcCcccccccCceE
Confidence 98 99999999999999987653 34566666654432 2222 24568888877665556 67 9999
Q ss_pred eeChhhhCCCCCC
Q 024293 254 RIGSTIFGAREYP 266 (269)
Q Consensus 254 R~G~alyG~~p~~ 266 (269)
|||++|||.+|..
T Consensus 224 R~Gi~LYG~~p~~ 236 (395)
T 3hur_A 224 RPGQLISGVNVSN 236 (395)
T ss_dssp CCCGGGGTCCTTT
T ss_pred ecChhhcCCCCCc
Confidence 9999999998874
No 11
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=100.00 E-value=1e-37 Score=293.39 Aligned_cols=211 Identities=12% Similarity=0.145 Sum_probs=186.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCC
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDD 104 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~ 104 (269)
.|+++|++|++.+++.+ ++++++++|+|+ ||...+ +.+.++|+++|+|++++||..+|++ +..+
T Consensus 16 idl~ai~~N~~~l~~~~----------~~~~~l~~vvKanaYGhg~~~v~~~l~~~G~~~f~vas~~Ea~~lr~~G~~~~ 85 (391)
T 2vd8_A 16 VDLDAIYNNVTHIXEFI----------PSDVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAGITAP 85 (391)
T ss_dssp EEHHHHHHHHHHHHHHS----------CTTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSC
T ss_pred EcHHHHHHHHHHHHHhc----------CCCCEEEEEEEecccCCChHHHHHHHHHcCCCeEEeecHHHHHHHHhcCCCCc
Confidence 39999999999999987 557899999999 999887 5677999999999999999999998 6667
Q ss_pred ceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCCh-hhHHHHHHH
Q 024293 105 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP-SGCLELVKH 183 (269)
Q Consensus 105 I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~-ee~~~~~~~ 183 (269)
| +++|+.++++++.++ .++++++|+|+++++.|++ +.+.++ +++|||+|||| |+|+||.| +++.++++.
T Consensus 86 i--l~~g~~~~~~~~~~~----~~~i~~~vds~~~l~~l~~-a~~~~~-~~~V~lkvdtG--m~R~G~~~~~e~~~~~~~ 155 (391)
T 2vd8_A 86 I--LVLGPSPPRDINVAA----ENDVALTVFQXEWVDEAIX-LWDGSS-TMXYHINFDSG--MGRIGIRERXELXGFLXS 155 (391)
T ss_dssp E--EECSCCCGGGHHHHH----HTTEEEECCCHHHHHHHHH-HCCSSC-CEEEEEEBCSS--CCSSSBCCHHHHHHHHHH
T ss_pred e--EEecCCChHHHHHHH----HCCeEEEEcCHHHHHHHHH-HHhcCC-ceEEEEEEeCC--CCCCCCCchhhHHHHHHH
Confidence 6 466998999999998 4789999999999999999 877787 99999999999 99999997 899999999
Q ss_pred HHhcCCCeEEEEeEeeCCCCCC--C--cHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhh
Q 024293 184 VSQNCPNLEFCGLMTIGMPDYT--S--TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTI 259 (269)
Q Consensus 184 i~~~~~~L~i~GlmTH~a~~~~--~--~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~al 259 (269)
+. .+|+|++.|||||++++++ . +..|+++|.++.+.+++ .|+++ ..+|+|||.+++..++.++|+||||+++
T Consensus 156 i~-~~~~l~l~Gl~tH~~~~d~~~~~~~~~q~~~f~~~~~~l~~-~g~~~--~~~~~gnS~g~~~~~~~~~~~vR~G~~l 231 (391)
T 2vd8_A 156 LE-GAPFLELEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXE-FGVDP--XFVHTANSAATLRFQGITFNAVRIGIAM 231 (391)
T ss_dssp HT-TCTTEEEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHH-TTCCC--CSEECCCHHHHTTCTTCCTTEEEESTTT
T ss_pred Hh-hcCCceEEEeeeccccccCCCcHHHHHHHHHHHHHHHHHHh-ccCCc--ceEEecchhHhhcCcccCCCEEehhHHh
Confidence 98 9999999999999997543 2 56689999999888887 48765 5679999988776667789999999999
Q ss_pred hCCCCC
Q 024293 260 FGAREY 265 (269)
Q Consensus 260 yG~~p~ 265 (269)
||.+|+
T Consensus 232 yg~~p~ 237 (391)
T 2vd8_A 232 YGLSPS 237 (391)
T ss_dssp TTCCSC
T ss_pred cCCCCc
Confidence 999886
No 12
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.8e-37 Score=287.87 Aligned_cols=211 Identities=17% Similarity=0.171 Sum_probs=185.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCC
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDD 104 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~ 104 (269)
.|+++|++|++.+++.+ + ++++++|+|+ ||...+ +.+.++|++.|+|++++||..++++ +..+
T Consensus 16 idl~~i~~N~~~l~~~~----------~-~~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~~~ 84 (384)
T 1xfc_A 16 VDLGAIEHNVRVLREHA----------G-HAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAP 84 (384)
T ss_dssp EEHHHHHHHHHHHHHHH----------T-TSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESCHHHHHHHHHTTCCSC
T ss_pred EeHHHHHHHHHHHHHhC----------C-CCEEEEEEeeCCcCCChHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCCCC
Confidence 49999999999999988 5 7899999999 999887 5667899999999999999999998 5556
Q ss_pred ceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCCh---hhHHHHH
Q 024293 105 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP---SGCLELV 181 (269)
Q Consensus 105 I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~---ee~~~~~ 181 (269)
| +++|+.++++++.++ .++++++|||+++++.|++.+.+.++ +++|||+|||| |+|+||.+ +++.+++
T Consensus 85 I--l~~g~~~~~~~~~~~----~~~i~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vdtG--~~R~G~~~~~~~~~~~~~ 155 (384)
T 1xfc_A 85 V--LAWLHPPGIDFGPAL----LADVQVAVSSLRQLDELLHAVRRTGR-TATVTVKVDTG--LNRNGVGPAQFPAMLTAL 155 (384)
T ss_dssp E--EECCCCTTCCCHHHH----HTTCEEEECSHHHHHHHHHHHHHHCC-CEEEEEEBCSS--CCSSSBCTTTHHHHHHHH
T ss_pred E--EEEcCCCHHHHHHHH----HcCcEEEECCHHHHHHHHHHHHhcCC-ceEEEEEEECC--CCccCCCcCcHHHHHHHH
Confidence 6 578988899999998 37889999999999999999988888 99999999999 99999999 8999999
Q ss_pred HHHHhcCCCeEEEEeEeeCCCCCC----CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeCh
Q 024293 182 KHVSQNCPNLEFCGLMTIGMPDYT----STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGS 257 (269)
Q Consensus 182 ~~i~~~~~~L~i~GlmTH~a~~~~----~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~ 257 (269)
+.+. .+|+|++.|||||+++.++ ....|+++|.++++.+++ .|+++ ..+|+|||.+++.+++.++|+||||+
T Consensus 156 ~~i~-~~~~l~l~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~l~~g~s~~~~~~~~~~~~~vR~G~ 231 (384)
T 1xfc_A 156 RQAM-AEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQARE-QGVRF--EVAHLSNSSATMARPDLTFDLVRPGI 231 (384)
T ss_dssp HHHH-HTTSEEEEEEECCC-----CCSHHHHHHHHHHHHHHHHHHH-TTCCC--SEEECBCHHHHHHCGGGCCSEECCSG
T ss_pred HHHH-hCCCCcEEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHh-cCCCC--CeEEEecCHHHhcCccccCCEEccCH
Confidence 9998 9999999999999997442 245789999999998887 58865 67899999998877777999999999
Q ss_pred hhhCCCCC
Q 024293 258 TIFGAREY 265 (269)
Q Consensus 258 alyG~~p~ 265 (269)
++||..|+
T Consensus 232 ~lyg~~~~ 239 (384)
T 1xfc_A 232 AVYGLSPV 239 (384)
T ss_dssp GGGTCCSS
T ss_pred HhHCCCcc
Confidence 99999885
No 13
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=100.00 E-value=3.9e-37 Score=288.81 Aligned_cols=211 Identities=16% Similarity=0.140 Sum_probs=185.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCC
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDD 104 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~ 104 (269)
.|+++|++|++.+++.+ + ++++++|+|+ ||...+ +.+.++|++.|+|++++||..+|++ ++.+
T Consensus 12 idl~~i~~N~~~l~~~~----------~-~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~f~vas~~Ea~~~~~~G~~~~ 80 (386)
T 1vfs_A 12 IDLDAVRANVRALRARA----------P-RSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGR 80 (386)
T ss_dssp EEHHHHHHHHHHHHTTS----------T-TSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSE
T ss_pred EeHHHHHHHHHHHHHhC----------C-CcEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhcCCCCC
Confidence 39999999999998876 3 6799999999 999887 5677999999999999999999998 5556
Q ss_pred ceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHH---H
Q 024293 105 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLEL---V 181 (269)
Q Consensus 105 I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~---~ 181 (269)
| +++|++++++++.++ .++++++|||+++++.|++.|.+.++ +++|||+|||| |+|+||.|+++.++ +
T Consensus 81 i--l~~~~~~~~~~~~~~----~~~i~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vdtG--~~R~G~~~~e~~~~~~~~ 151 (386)
T 1vfs_A 81 I--MCWLWTPGGPWREAI----ETDIDVSVSGMWALDEVRAAARAAGR-TARIQLKADTG--LGRNGCQPADWAELVGAA 151 (386)
T ss_dssp E--EECCCCTTCCHHHHH----HTTCEEEECSHHHHHHHHHHHHHHTS-CEEEEEEBCSS--CCSSSBCHHHHHHHHHHH
T ss_pred E--EEECCCCHHHHHHHH----HcCCEEEECCHHHHHHHHHHHHhcCC-ceEEEEEEcCC--CCCCCCCHhHHHHHHHHH
Confidence 6 567888889999998 37889999999999999999988888 99999999999 99999999887554 8
Q ss_pred HHHHhcCCCeEEEEeEeeCCCCCC--C--cHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeCh
Q 024293 182 KHVSQNCPNLEFCGLMTIGMPDYT--S--TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGS 257 (269)
Q Consensus 182 ~~i~~~~~~L~i~GlmTH~a~~~~--~--~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~ 257 (269)
+.+. .+|+|++.|||||+++.++ . +..|+++|.++++.+++ .|+++ ..+|+|||.+++.+++.++|+||||+
T Consensus 152 ~~i~-~~~~l~l~Gl~tH~~~~~~~~~~~~~~~~~~f~~~~~~l~~-~g~~~--~~~~~g~s~g~~~~~~~~~~~vR~G~ 227 (386)
T 1vfs_A 152 VAAQ-AEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEK-EGVDP--EVRHIANSPATLTLPETHFDLVRTGL 227 (386)
T ss_dssp HHHH-HTTSEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHH-TTCCC--SEEEEECHHHHHHCGGGCSSEEEECG
T ss_pred HHHH-hCCCceEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHHHHh-cCCCC--CeEEecCCHHHHcCccccCCEEEeCh
Confidence 9998 9999999999999997543 2 46789999999988887 48765 67899999998877778999999999
Q ss_pred hhhCCCCC
Q 024293 258 TIFGAREY 265 (269)
Q Consensus 258 alyG~~p~ 265 (269)
++||.+|+
T Consensus 228 ~lyg~~p~ 235 (386)
T 1vfs_A 228 AVYGVSPS 235 (386)
T ss_dssp GGGTCCSC
T ss_pred hhhCCCcc
Confidence 99999886
No 14
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=100.00 E-value=4.1e-37 Score=289.13 Aligned_cols=211 Identities=13% Similarity=0.112 Sum_probs=179.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCc-EEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCC
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRI-RIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPD 103 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~-~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~ 103 (269)
.|+++|++|++.+++.+ + ++ ++++|+|+ ||...+ +.+.++|+++|+|++++||..+|++ ++.
T Consensus 12 idl~ai~~N~~~l~~~~----------~-~~~~l~~vvKAnaYG~g~~~v~~~l~~~G~~~f~vas~~Ea~~lr~aG~~~ 80 (388)
T 1bd0_A 12 VDLDAIYDNVENLRRLL----------P-DDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEA 80 (388)
T ss_dssp EEHHHHHHHHHHHHHHS----------C-TTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCS
T ss_pred EcHHHHHHHHHHHHHhC----------C-CCCEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhCCcCC
Confidence 39999999999999986 4 67 99999999 999887 5677999999999999999999998 556
Q ss_pred CceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCCh-hhHHHHHH
Q 024293 104 DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP-SGCLELVK 182 (269)
Q Consensus 104 ~I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~-ee~~~~~~ 182 (269)
+| +++|+.++++++.++ .++++++|+|+++++.|++.| +.++ +++|||+|||| |+|+||.| +++.++++
T Consensus 81 ~I--l~~g~~~~~~~~~~~----~~~i~~~vds~~~l~~l~~~a-~~~~-~~~V~lkvdtG--m~R~G~~~~~e~~~~~~ 150 (388)
T 1bd0_A 81 PI--LVLGASRPADAALAA----QQRIALTVFRSDWLEEASALY-SGPF-PIHFHLKMDTG--MGRLGVKDEEETKRIVA 150 (388)
T ss_dssp CE--EECSCCCGGGHHHHH----HTTEEEEECCHHHHHHHHHHC-CCSS-CEEEEEEBCSS--SCSSSBCSHHHHHHHHH
T ss_pred CE--EEECCCCHHHHHHHH----HcCCEEEECCHHHHHHHHHHh-ccCC-CeEEEEEEcCC--CCcCCCCCHHHHHHHHH
Confidence 77 567998999999998 478999999999999999988 7887 99999999999 99999997 89999999
Q ss_pred HHHhcCCCeEEEEeEeeCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhhCC
Q 024293 183 HVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGA 262 (269)
Q Consensus 183 ~i~~~~~~L~i~GlmTH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~alyG~ 262 (269)
.+. .+|+|++.|||||+++.+++....+......|..+++.+|+++ ..+|+|||.+++..++.++|+||||+++||.
T Consensus 151 ~i~-~~~~l~l~Gl~tH~~~~~~~~~~~~~~q~~~f~~l~~~~g~~~--~~~~~g~S~~~~~~~~~~~~~vR~G~~lyG~ 227 (388)
T 1bd0_A 151 LIE-RHPHFVLEGLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSRP--PLVHCANSAASLRFPDRTFNMVRFGIAMYGL 227 (388)
T ss_dssp HHH-HSTTEEEEEEECCCSSTTSSCCHHHHHHHHHHHHHHTTCSSCC--SEEECCCHHHHHHCTTSCTTEEEECGGGGTC
T ss_pred HHH-hCCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHHHhhcCCCC--CeEEecCCHHHhcCcccCCCEEehhHHHHCC
Confidence 998 9999999999999998554322223333333444655237654 6789999999887777799999999999999
Q ss_pred CCC
Q 024293 263 REY 265 (269)
Q Consensus 263 ~p~ 265 (269)
.|+
T Consensus 228 ~p~ 230 (388)
T 1bd0_A 228 APS 230 (388)
T ss_dssp CSC
T ss_pred Ccc
Confidence 885
No 15
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=100.00 E-value=6.5e-37 Score=286.46 Aligned_cols=212 Identities=17% Similarity=0.169 Sum_probs=175.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCceeeee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~l 110 (269)
|+++|++|++.+++.+.. .+++++||+|+||+..+ +.+.++|++.|+|++++||+.+|++...++. +.+
T Consensus 20 dl~al~~N~~~l~~~~~~---------~~~~l~~vvKah~~~~va~~l~~~G~~~~~va~~~Ea~~l~~~Gi~~~i-l~~ 89 (376)
T 3llx_A 20 DEAKLKSNINYLKQRVES---------LGSHLRPHLKTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYTDLL-YAV 89 (376)
T ss_dssp EHHHHHHHHHHHHHHHHH---------TTCCBCCBCTTTCBHHHHHHHCSSTTSCEEESSHHHHHHHHHTTCCEEE-EEE
T ss_pred cHHHHHHHHHHHHHHHHh---------CCCeEEEEecccCCHHHHHHHHhcCCCcEEEecHHHHHHHHhCCCCcEE-EeC
Confidence 999999999999999831 46899999999999887 6677899999999999999999998433332 355
Q ss_pred cCCChhcHHhHhhcC-CCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhh--HHHHHHHHHhc
Q 024293 111 GNLQSNKVKPLLAGV-PNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSG--CLELVKHVSQN 187 (269)
Q Consensus 111 G~~~~~~~~~lv~~~-~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee--~~~~~~~i~~~ 187 (269)
|.+ +++++.++++. +.++++++|||.++++.|++.+.+.++ +++|||+|||| |+|+||.|++ +..+++ .
T Consensus 90 ~~~-~~~~~~~~~l~~~~~~l~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~vdtG--~~R~G~~~~~~~l~~~~~----~ 161 (376)
T 3llx_A 90 GIA-PAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQ-DFSVFIEIDSD--DHRGGIKPSDSKLLTIAK----T 161 (376)
T ss_dssp ECC-GGGHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTC-CCEEEEEBCSS--SSSSCBCTTCTHHHHHHH----H
T ss_pred CCC-HHHHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEEECCC--CCCCCCCCchHHHHHHHH----H
Confidence 776 88898887211 137899999999999999999998888 99999999999 9999999976 444433 3
Q ss_pred CCCeEEEEeEeeCCCCCC---------CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHc-CCCeeeeCh
Q 024293 188 CPNLEFCGLMTIGMPDYT---------STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEM-GSTNVRIGS 257 (269)
Q Consensus 188 ~~~L~i~GlmTH~a~~~~---------~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~-~~~~VR~G~ 257 (269)
+ +|++.|||||+++.++ ....|++.|.++.+.+++ .|+++ ..+|+|||+++..+++. +.|+||||+
T Consensus 162 l-~l~l~Gl~th~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~l~~-~g~~~--~~vs~g~S~~~~~~~~~~~~~~vR~G~ 237 (376)
T 3llx_A 162 L-GEHFTGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLET-AGIHC--AITSVGSTPTAHFGEDFSDISEVRAGV 237 (376)
T ss_dssp H-GGGEEEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEEECCHHHHHHCSCCTTCSEECCCG
T ss_pred h-CCEEeEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEEcCChhhhhhhhcCCccEeccce
Confidence 3 8999999999997432 135688888888888887 48765 78899999998876665 789999999
Q ss_pred hhhCCCCC
Q 024293 258 TIFGAREY 265 (269)
Q Consensus 258 alyG~~p~ 265 (269)
++||+.||
T Consensus 238 ~lyg~~~~ 245 (376)
T 3llx_A 238 YTTFDLVM 245 (376)
T ss_dssp GGTCCHHH
T ss_pred EEeccHhH
Confidence 99999875
No 16
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=100.00 E-value=1.6e-35 Score=275.08 Aligned_cols=208 Identities=15% Similarity=0.147 Sum_probs=180.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCC
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDD 104 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~ 104 (269)
.|+++|++|++.+++.+ +. +++++|+|+ ||...+ +.+.++|++.|+|++++||..++++ +..+
T Consensus 8 idl~~l~~N~~~~~~~~----------~~-~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~E~~~~~~~G~~~~ 76 (361)
T 2dy3_A 8 IDLDAIAHNTRVLKQMA----------GP-AKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIGISQE 76 (361)
T ss_dssp ECHHHHHHHHHHHHHHH----------TT-SEEEEECHHHHHHTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSE
T ss_pred EeHHHHHHHHHHHHHhC----------CC-cEEEEEEEecCcCCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCCCC
Confidence 39999999999999988 54 899999999 999887 5667899999999999999999988 5556
Q ss_pred ceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHH
Q 024293 105 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV 184 (269)
Q Consensus 105 I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i 184 (269)
| +++|+.++++++.++ .++++++|||.++++.|++.+.+ +++|||+|||| |+|+||.++++.++++.+
T Consensus 77 i--l~~~~~~~~~~~~~~----~~~i~~~vds~~~l~~l~~~a~~----~~~v~l~vdtG--~~R~G~~~~~~~~~~~~~ 144 (361)
T 2dy3_A 77 V--LCWIWTPEQDFRAAI----DRNIDLAVISPAHAKALIETDAE----HIRVSIKIDSG--LHRSGVDEQEWEGVFSAL 144 (361)
T ss_dssp E--EECCCCTTSCHHHHH----TTTCEEEECSHHHHHHHHTSCCS----CEEEEEEBCCS--SCSSSBCHHHHHHHHHHH
T ss_pred E--EEECCCCHHHHHHHH----HcCCEEEECCHHHHHHHHHhCcc----CCEEEEEEeCC--CCCCCCCHHHHHHHHHHH
Confidence 6 577888899999998 47889999999999999886642 58999999999 999999999999999999
Q ss_pred HhcCCCeEEEEeEeeCCCCCC----CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhh
Q 024293 185 SQNCPNLEFCGLMTIGMPDYT----STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 260 (269)
Q Consensus 185 ~~~~~~L~i~GlmTH~a~~~~----~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~aly 260 (269)
. .+|+|++.|||||+++.++ ....|+++|.++++.+++ .|+++ ..+|+|||.+++..++.++|+||||+++|
T Consensus 145 ~-~~~~l~~~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~~~~g~s~~~~~~~~~~~~~vR~G~~l~ 220 (361)
T 2dy3_A 145 A-AAPHIEVTGMFTHLACADEPENPETDRQIIAFRRALALARK-HGLEC--PVNHVCNSPAFLTRSDLHMEMVRPGLAFY 220 (361)
T ss_dssp H-TCTTEEEEEEECCCC--------CHHHHHHHHHHHHHHHHH-TTCCC--CSCBCCCHHHHHHCGGGCTTEECCCGGGG
T ss_pred H-hCCCCCEEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHh-cCCCC--CeEEEeCCHHHhcCcccCCCEEecchHhh
Confidence 8 9999999999999997432 256789999999998887 58865 56899999998877777999999999999
Q ss_pred CCCCC
Q 024293 261 GAREY 265 (269)
Q Consensus 261 G~~p~ 265 (269)
|.+|+
T Consensus 221 g~~~~ 225 (361)
T 2dy3_A 221 GLEPV 225 (361)
T ss_dssp TCCSS
T ss_pred CCCcc
Confidence 99876
No 17
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=100.00 E-value=1.2e-35 Score=282.47 Aligned_cols=216 Identities=12% Similarity=0.120 Sum_probs=182.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCceeeee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~l 110 (269)
|+++|++|++.+++.+.. .+++++||+|+||+..+ +.++++|++.|+|++++||..++++...+| ++.
T Consensus 52 Dl~al~~N~~~l~~~~~~---------~gv~l~~vvKah~~~~va~~l~~~G~~g~~vas~~Ea~~l~~~Gi~~i--ll~ 120 (426)
T 3gwq_A 52 YADRVEHNLKWMQAFVAE---------YGVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHGGVSRV--LMA 120 (426)
T ss_dssp EHHHHHHHHHHHHHHHHH---------HCCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTCCEE--EEC
T ss_pred eHHHHHHHHHHHHHHHhh---------cCCEEEEEEccCCCHHHHHHHHHCCCCeEEEeCHHHHHHHHHCCCCeE--EEE
Confidence 999999999999998832 36899999999999887 677899999999999999999998843455 233
Q ss_pred -cCCChhcHHhHhhcCC--CccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCCh-hhHHHHHHHHHh
Q 024293 111 -GNLQSNKVKPLLAGVP--NLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP-SGCLELVKHVSQ 186 (269)
Q Consensus 111 -G~~~~~~~~~lv~~~~--~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~-ee~~~~~~~i~~ 186 (269)
+.+.+++++.++++.+ .++++++|||+++++.|++.+.+.++ +++|+|+|||| |+|+|+.+ +++.++++.+.
T Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~l~~~Vds~~~l~~L~~~a~~~~~-~~~V~l~VdtG--~~R~Gv~~~~e~~~l~~~i~- 196 (426)
T 3gwq_A 121 NQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNK-QLQVLLELGVP--GGRTGVRDAAQRNAVLEAIT- 196 (426)
T ss_dssp SCCCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC-CEEEEEEECCT--TSSSSBCSHHHHHHHHHHHH-
T ss_pred CCcCCHHHHHHHHHHhhcCCccEEEEeCCHHHHHHHHHHHHHCCC-eeEEEEEeCCC--CCcCCCCCHHHHHHHHHHHH-
Confidence 4445677777653212 26799999999999999999999998 99999999999 99999986 99999999999
Q ss_pred cCC-CeEEEEeEeeCCCCCC--CcHHHHHHHHHHHHHHHHHcCC-CCCcceeecCCccCHHHHHHc---------CCCee
Q 024293 187 NCP-NLEFCGLMTIGMPDYT--STPENFKTLAKCRSEVCKALGI-PEEQCDLSMGMSGDFELAIEM---------GSTNV 253 (269)
Q Consensus 187 ~~~-~L~i~GlmTH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~-~~~~~~lS~G~s~~~~~~~~~---------~~~~V 253 (269)
.+| +|++.|||||++..++ ....+|+++.++++++++. |+ ..+...+|+|||+||+.+.+. +.|+|
T Consensus 197 ~~~~~l~l~Gl~th~g~~~~~~~~~~~~~~l~~l~~~L~~~-g~~~~~~~~lS~G~S~~~~~a~~~~~~~~~~~~g~t~v 275 (426)
T 3gwq_A 197 RYPDTLKLAGVELYEGVLKEEHEVREFLQSAVAVTRELVEQ-ERFARAPAVLSGAGSAWYDVVAEEFVKASETGKVEVVL 275 (426)
T ss_dssp TSTTTEEEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHHHH-TCCSSSSEEEEECCSTTHHHHHHHTHHHHHSSSEEEEE
T ss_pred cCCCCEEEEeEEEEccccCCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCEEEecCChhHHHHHhhhhccccCCCcCEEE
Confidence 999 9999999999997543 4567899999999999874 75 212478999999999987764 88999
Q ss_pred eeChhhhCCC
Q 024293 254 RIGSTIFGAR 263 (269)
Q Consensus 254 R~G~alyG~~ 263 (269)
|+|+++||++
T Consensus 276 R~Gs~if~d~ 285 (426)
T 3gwq_A 276 RPGCYLTHDV 285 (426)
T ss_dssp CCCCSSSSCS
T ss_pred ecceEEEcCh
Confidence 9999999987
No 18
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=100.00 E-value=5e-35 Score=274.06 Aligned_cols=205 Identities=11% Similarity=0.103 Sum_probs=170.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCC
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDD 104 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~ 104 (269)
.|+++|++|++.+++.+ + ++++++|+|+ ||...+ +.+.++|++.|+|++++||..+|++ ++.+
T Consensus 14 idl~~l~~N~~~l~~~~----------~-~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~aG~~~~ 82 (380)
T 3co8_A 14 FSKSSLAYNVQYTKQVS----------G-AKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGIDDF 82 (380)
T ss_dssp ECHHHHHHHHHHHHHHH----------C-CSEEEEECHHHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTTCCCC
T ss_pred EcHHHHHHHHHHHHHhC----------C-CcEEEEEEEecccCCCHHHHHHHHHHcCCCEEEEeeHHHHHHHHhcCCCCC
Confidence 39999999999999987 4 6899999999 999887 5567899999999999999999998 5557
Q ss_pred ceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCC-hhhHHHHHHH
Q 024293 105 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVE-PSGCLELVKH 183 (269)
Q Consensus 105 I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~-~ee~~~~~~~ 183 (269)
| +++|+.++++++.++ .++++++|+|+++++.|++.+. .+ +++|||+|||| |+|+||. ++++.++++.
T Consensus 83 i--l~~g~~~~~~~~~~~----~~~i~~~vds~~~l~~l~~~a~-~~--~~~V~l~vdtG--~~R~G~~~~ee~~~~~~~ 151 (380)
T 3co8_A 83 I--LILGPIDVKYAPIAS----KYHFLTTVSSLDWLKSADKILG-KE--KLSVNLAVDTG--MNRIGVRSKKDLKDEIEF 151 (380)
T ss_dssp E--EECSCCCGGGHHHHH----HTTCEEEECCHHHHHHHHHHCT-TC--CEEEEEEBCSS--SCSSSBCSHHHHHHHHHH
T ss_pred E--EEECCCCHHHHHHHH----HCCCEEEECCHHHHHHHHHhcc-cC--CceEEEEEcCC--CCCCCCCCHHHHHHHHHH
Confidence 6 466999999999998 3688999999999999999887 55 68999999999 9999999 8999999999
Q ss_pred HHhc-CCCeEEEEeEeeCCCCCCC----cHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHc---CCCeeee
Q 024293 184 VSQN-CPNLEFCGLMTIGMPDYTS----TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEM---GSTNVRI 255 (269)
Q Consensus 184 i~~~-~~~L~i~GlmTH~a~~~~~----~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~---~~~~VR~ 255 (269)
+. . +|+|++.|||||+++.+++ +..|+..|.++.+. +..+ ..+|+|||++++..++. +.|+|||
T Consensus 152 i~-~~~~~l~l~Gl~tH~~~~~~~~~~~~~~q~~~f~~~~~~-----~~~~--~~~~~~nS~g~~~~~~~~~~~~~~vR~ 223 (380)
T 3co8_A 152 LQ-EHSDHFSYDGIFTHFASSDNPDDHYFQRQKNRWYELIDG-----LIMP--RYVHVMNSGAAMYHSKELPGCNSIARV 223 (380)
T ss_dssp HH-HCTTTEEEEEEECCCC---------CHHHHHHHHHHHTT-----SCCC--SEEECBCHHHHHHCGGGCTTSCSEEEE
T ss_pred HH-hhCCCceEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHhc-----cCCC--CcEEEeCCHHHhcCcccccCCCceEcc
Confidence 98 8 9999999999999975432 34456665553332 1122 45789999988876666 8999999
Q ss_pred ChhhhCCCCC
Q 024293 256 GSTIFGAREY 265 (269)
Q Consensus 256 G~alyG~~p~ 265 (269)
|++|||..|+
T Consensus 224 G~~lyG~~p~ 233 (380)
T 3co8_A 224 GTVVYGVEPS 233 (380)
T ss_dssp STTTTTCCTT
T ss_pred cHhhhCcCCC
Confidence 9999999886
No 19
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=100.00 E-value=2.6e-35 Score=276.02 Aligned_cols=204 Identities=17% Similarity=0.263 Sum_probs=172.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHHHHHHHhCCCeeeeccHHHHHHHHHc-CCCCc
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQVYEAGHRCFGENYVQEIVEKAAQ-LPDDL 105 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I 105 (269)
.|+++|++|++.+++.+ + ++++++|+|+ ||...+..++.. ++.|+|++++||..+|++ +..+|
T Consensus 28 idl~al~~N~~~l~~~~----------~-~~~l~~vvKanaYGhg~~~v~~~l~~-~~~~~va~~~Ea~~lr~~G~~~~I 95 (379)
T 2rjg_A 28 INRRALRHNLQRLRELA----------P-ASKMVAVVKANAYGHGLLETARTLPD-ADAFGVARLEEALRLRAGGITKPV 95 (379)
T ss_dssp EEHHHHHHHHHHHHHHS----------T-TSEEEEECHHHHHTTCHHHHHHHCTT-CSEEEESSHHHHHHHHHTTCCSCE
T ss_pred EeHHHHHHHHHHHHHhC----------C-CCEEEEEEeecccCCCHHHHHHHHHh-CCEEEEeEHHHHHHHHhCCcCCCE
Confidence 39999999999999876 4 7899999999 999888555444 899999999999999998 55577
Q ss_pred eeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHH
Q 024293 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVS 185 (269)
Q Consensus 106 ~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~ 185 (269)
. +++|+.++++++.++ .++++++|+|+++++.|++ + +.++ +++|||+|||| |+|+||.|+++.++++.+.
T Consensus 96 l-~~~g~~~~~~~~~~~----~~~i~~~vds~~~l~~l~~-a-~~~~-~~~V~l~vdtG--m~R~G~~~~e~~~~~~~i~ 165 (379)
T 2rjg_A 96 L-LLEGFFDARDLPTIS----AQHFHTAVHNEEQLAALEE-A-SLDE-PVTVWMKLDTG--MHRLGVRPEQAEAFYHRLT 165 (379)
T ss_dssp E-ETTCCSCGGGHHHHH----HTTEEEEECSHHHHHHHHH-C-CCSS-CBCEEEEBCSS--CCSSSBCHHHHHHHHHHHT
T ss_pred E-EEECCCCHHHHHHHH----HcCcEEEECCHHHHHHHHh-h-CCCC-CeEEEEEECCC--CCccCCCHHHHHHHHHHHH
Confidence 2 367988999999998 4789999999999999999 6 7777 89999999999 9999999999999999998
Q ss_pred hcCCC-eEEEEeEeeCCCCCCC----cHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhh
Q 024293 186 QNCPN-LEFCGLMTIGMPDYTS----TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 260 (269)
Q Consensus 186 ~~~~~-L~i~GlmTH~a~~~~~----~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~aly 260 (269)
.+|+ |++.|||||+++.+++ ...|+++|.+ +.+ .++. . +|+|||++++.+++.++|+||||++||
T Consensus 166 -~~~~~l~l~Gl~tH~~~~d~~~~~~~~~q~~~f~~----~~~--~l~~--~-~s~gnS~~~~~~~~~~~~~vR~G~~ly 235 (379)
T 2rjg_A 166 -QCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNT----FCE--GKPG--Q-RSIAASGGILLWPQSHFDWVRPGIILY 235 (379)
T ss_dssp -TCSSBCSSCEEECCCSSTTCTTSTHHHHHHHHHHH----HHT--TCCS--C-EECCCHHHHHHCGGGCSSEECCCGGGG
T ss_pred -hCCCcEEEEEEEEECCccCCCCcHHHHHHHHHHHH----HHh--ccCC--C-eEEEECcchhcCcccCCCEECccHHHH
Confidence 9999 9999999999975532 2334444444 332 2332 3 899999999887788999999999999
Q ss_pred CCCCCC
Q 024293 261 GAREYP 266 (269)
Q Consensus 261 G~~p~~ 266 (269)
|.+|+.
T Consensus 236 G~~p~~ 241 (379)
T 2rjg_A 236 GVSPLE 241 (379)
T ss_dssp TCCSSS
T ss_pred CCCccc
Confidence 999863
No 20
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=100.00 E-value=1.8e-34 Score=267.84 Aligned_cols=202 Identities=14% Similarity=0.143 Sum_probs=170.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEecc----CChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCC
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDD 104 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----hg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~ 104 (269)
.|+++|++|++.+++. . ++++++|+|+ ||...+ +.+.++ ++.|+|++++||..+|++ +..+
T Consensus 8 idl~~l~~N~~~l~~~-~-----------~~~l~~vvKanaYG~g~~~i~~~l~~~-~~~~~va~~~Ea~~~~~~G~~~~ 74 (357)
T 1rcq_A 8 IDLQALRHNYRLAREA-T-----------GARALAVIKADAYGHGAVRCAEALAAE-ADGFAVACIEEGLELREAGIRQP 74 (357)
T ss_dssp EEHHHHHHHHHHHHHH-H-----------CSEEEEECHHHHHTTCHHHHHHHHTTT-CSEEEESSHHHHHHHHHTTCCSC
T ss_pred EeHHHHHHHHHHHHhC-C-----------CCeEEEEEEeccccCCHHHHHHHHHHh-CCEEEEccHHHHHHHHhCCcCCC
Confidence 3999999999999886 1 4689999999 999888 455677 999999999999999998 5557
Q ss_pred ceeeeecCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHH
Q 024293 105 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV 184 (269)
Q Consensus 105 I~~~~lG~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i 184 (269)
|. +++|+.++++++.++ .++++++|+|+++++.|++ + +.++ +++|||+|||| |+|+||.++++.++++.+
T Consensus 75 Il-~~~g~~~~~~~~~~~----~~~i~~~vds~~~l~~l~~-a-~~~~-~~~V~l~vdtG--~~R~G~~~~~~~~~~~~i 144 (357)
T 1rcq_A 75 IL-LLEGFFEASELELIV----AHDFWCVVHCAWQLEAIER-A-SLAR-PLNVWLKMDSG--MHRVGFFPEDFRAAHERL 144 (357)
T ss_dssp EE-ETTCCSSGGGHHHHH----HTTEEEEECSHHHHHHHHH-C-CCSS-CEEEEEEBCSS--SCSSSBCHHHHHHHHHHH
T ss_pred EE-EEeCCCCHHHHHHHH----HcCCEEEECCHHHHHHHHh-h-ccCC-CeEEEEEEcCC--CCCCCCCHHHHHHHHHHH
Confidence 62 477998999999998 3789999999999999999 7 7787 99999999999 999999999999999999
Q ss_pred HhcCCCeEEEEeEeeCCCCCCC----cHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhh
Q 024293 185 SQNCPNLEFCGLMTIGMPDYTS----TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 260 (269)
Q Consensus 185 ~~~~~~L~i~GlmTH~a~~~~~----~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~aly 260 (269)
. .+|+|++.|||||+++.++. ...|++.|.+ +.+ .+.. . +|+|||++++..++.++|+||||+++|
T Consensus 145 ~-~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~f~~----~~~--~l~~--~-~s~~ns~~~~~~~~~~~~~vR~G~~ly 214 (357)
T 1rcq_A 145 R-ASGKVAKIVMMSHFSRADELDCPRTEEQLAAFSA----ASQ--GLEG--E-ISLRNSPAVLGWPKVPSDWVRPGILLY 214 (357)
T ss_dssp H-HTTCEEEEEEECCCSSTTCTTCTHHHHHHHHHHH----HHT--TCCS--C-EECCCHHHHHHCTTSCCSEECCCGGGG
T ss_pred H-hCCCCcEEEEEEcccCCCCCCcHHHHHHHHHHHH----HHh--ccCC--C-eEEEeCHHhhcCcccCCCEEccCHHhh
Confidence 8 99999999999999975432 2234555444 332 2222 3 899999998877778899999999999
Q ss_pred CCCCC
Q 024293 261 GAREY 265 (269)
Q Consensus 261 G~~p~ 265 (269)
|.+|+
T Consensus 215 g~~~~ 219 (357)
T 1rcq_A 215 GATPF 219 (357)
T ss_dssp TCCSS
T ss_pred CCCcc
Confidence 99886
No 21
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=100.00 E-value=5.3e-34 Score=265.87 Aligned_cols=214 Identities=15% Similarity=0.106 Sum_probs=176.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCceeeee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~l 110 (269)
|+++|++|++.+++.+.. .++++++|+|+||...+ +.+.++|++.|+|++++||..+++...+++. .+.
T Consensus 18 dl~~l~~N~~~l~~~~~~---------~~~~l~~~vKa~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~~ii-~~~ 87 (376)
T 3anu_A 18 DRTTARRNAERMRERCRA---------LGVRLRPHVKTHKTLEGGLLATGGTRRGIAVSTLAEARFFADGGFDDIL-LAY 87 (376)
T ss_dssp EHHHHHHHHHHHHHHHHH---------HTCEECCBCTTTCCHHHHHHHTTTCCEEEEESSHHHHHHHHHTTCEEEE-EEE
T ss_pred eHHHHHHHHHHHHHHHHH---------cCCcEEEEEhhhcCHHHHHHHHHCCCCeEEEccHHHHHHHHHCCCCeEE-EEC
Confidence 999999999999998831 26799999999999887 5666899999999999999999988433542 356
Q ss_pred cCCChhcHHhHhhcCCC-ccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhh--HHHHHHHHHhc
Q 024293 111 GNLQSNKVKPLLAGVPN-LAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSG--CLELVKHVSQN 187 (269)
Q Consensus 111 G~~~~~~~~~lv~~~~~-~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee--~~~~~~~i~~~ 187 (269)
|.. +++++.++++... ++++++|||.++++.|++.+.+.++ +++|+|+|||| |+|+|+.|++ +.++++.+. .
T Consensus 88 ~~~-~~~l~~~~~l~~~~~~i~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vd~g--~~R~G~~~~~~~~~~l~~~i~-~ 162 (376)
T 3anu_A 88 PVP-TARLEECAGLARRLDAFHVLLDRPEALASLRQRPLGHGK-RWLVWLKLDCG--NGRAGVRPTDPAALELAQAIA-N 162 (376)
T ss_dssp ECC-GGGHHHHHHHHHHSSCEEEEECCHHHHHHHHTSCCCTTC-CEEEEEEECCC----CSSBCTTSHHHHHHHHHHH-H
T ss_pred CCc-HHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHHhCCC-ceEEEEEECCC--CCcCCCCCCchhHHHHHHHHh-C
Confidence 887 8899988821001 6889999999999999998887787 99999999999 9999999987 999999998 8
Q ss_pred CC---CeEEEEeEeeCCC----CCC-----CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccC-HHHHHH-cCCCee
Q 024293 188 CP---NLEFCGLMTIGMP----DYT-----STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGD-FELAIE-MGSTNV 253 (269)
Q Consensus 188 ~~---~L~i~GlmTH~a~----~~~-----~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~-~~~~~~-~~~~~V 253 (269)
| +|++.|||||.++ +++ .+..+++.|.++++.+++ .|+++ ..+|+|+|++ +..+.+ .+.|+|
T Consensus 163 -~~~~~l~l~Gl~~h~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~vs~Ggs~~~~~~~~~~~~~~~v 238 (376)
T 3anu_A 163 -DAPEEVTLVGVYAHCGNTYGCSGADTIQAIARTTTNAVLSFVAALRQ-AGVPC--PQASIGSTPSCSHPIPEMSQLTEL 238 (376)
T ss_dssp -SCTTTEEEEEEEECCGGGC-CCSHHHHHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEEECCHHHHHSCCGGGGGSSEE
T ss_pred -CCCCceEEEEEEeeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEEccCHHHhhhhhhcCCceEe
Confidence 9 9999999999553 332 233578889998888887 48765 6789999998 776555 589999
Q ss_pred eeChhhhCCCC
Q 024293 254 RIGSTIFGARE 264 (269)
Q Consensus 254 R~G~alyG~~p 264 (269)
|+|+++||+.+
T Consensus 239 r~G~~l~~~~~ 249 (376)
T 3anu_A 239 HPGNYIFYDLQ 249 (376)
T ss_dssp CCCGGGTCCHH
T ss_pred ccceEEEeccc
Confidence 99999999764
No 22
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus}
Probab=99.97 E-value=1e-30 Score=247.07 Aligned_cols=210 Identities=13% Similarity=0.095 Sum_probs=167.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCCceee
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDDLEWH 108 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I~~~ 108 (269)
.|+++|++|++.+++.+ + ++++++|+|+++...+ +.+.++|+ .|+|++++||..++++ ++.+ .|+
T Consensus 39 idl~~l~~N~~~l~~~~----------~-~~~l~~vvKan~~~~v~~~l~~~G~-~~~vas~~E~~~~~~~G~~~~-~Il 105 (420)
T 2p3e_A 39 YSSNFIKERFEAYRKAF----------P-DALICYAVKANFNPHLVKLLGELGA-GADIVSGGELYLAKKAGIPPE-RIV 105 (420)
T ss_dssp EEHHHHHHHHHHHHHHS----------T-TSEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGG-GEE
T ss_pred EEHHHHHHHHHHHHHhC----------C-cCeEEEEEecCCCHHHHHHHHHcCC-eEEEeCHHHHHHHHHcCCChh-HEE
Confidence 49999999999999987 4 4699999999998777 77889999 9999999999999988 4433 237
Q ss_pred eecC-CChhcHHhHhhcCCCccE-EEeeCcHHHHHHHHHHHHhcCCCceeE------------EEEEeCCCCC--CccCC
Q 024293 109 FIGN-LQSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKV------------LVQVNTSGEE--SKSGV 172 (269)
Q Consensus 109 ~lG~-~~~~~~~~lv~~~~~~~l-~~~v~s~~~a~~L~~~a~~~~~~~i~V------------~lkIDtG~em--~R~G~ 172 (269)
++|+ .++++++.++ .+++ +++|+|+++++.|++.+.+.++ +++| |++|||| | +|+|+
T Consensus 106 ~~g~~~~~~~l~~a~----~~~i~~~~vds~~~l~~l~~~a~~~~~-~~~v~lRvn~~~~~~~~~~idtG--~~~~R~G~ 178 (420)
T 2p3e_A 106 YAGVGKTEKELTDAV----DSEILMFNVESRQELDVLNEIAGKLGK-KARIAIRVNPDVDPKTHPYIATG--MQKSKFGV 178 (420)
T ss_dssp ECSSCCCHHHHHHHH----HTTCSEEEECCHHHHHHHHHHHHHHTC-CEEEEEEEEC------------------CCSCE
T ss_pred EeCCCCCHHHHHHHH----HcCCCEEEeCCHHHHHHHHHHHHhcCC-CCcEEEEECCCCCCCCCcccccC--CCCCCCCC
Confidence 8898 5789999988 3677 6999999999999999988887 8999 9999999 8 99999
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEEeEeeCCCCC---CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHH----
Q 024293 173 EPSGCLELVKHVSQNCPNLEFCGLMTIGMPDY---TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELA---- 245 (269)
Q Consensus 173 ~~ee~~~~~~~i~~~~~~L~i~GlmTH~a~~~---~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~---- 245 (269)
.++++.++++.+. .+|+|++.|||||+++.+ +....++++|.++++.+++. |+++ .++|+|++...+..
T Consensus 179 ~~~e~~~~~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~--~~l~~Ggg~~~~~~~~~~ 254 (420)
T 2p3e_A 179 DIREAQKEYEYAS-KLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQK-GFDI--KYLDIGGGLGIKYKPEDK 254 (420)
T ss_dssp EGGGHHHHHHHHH-TCTTEEEEEEECCCCSSBSSCTHHHHHHHHHHHHHHHHHHT-TCCC--CEEECCCCBCCCCSTTCC
T ss_pred CHHHHHHHHHHHH-hCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCCC--CEEEECCCcCcCCCCCCC
Confidence 9999999999999 999999999999999743 23457899999999988874 8765 67788776543321
Q ss_pred ---HHcCCCeeeeChhhhCCCC
Q 024293 246 ---IEMGSTNVRIGSTIFGARE 264 (269)
Q Consensus 246 ---~~~~~~~VR~G~alyG~~p 264 (269)
++.+.|+||+|+++||..+
T Consensus 255 ~~~~~~~~~~vr~g~~~yg~~~ 276 (420)
T 2p3e_A 255 EPAPQDLADLLKDLLENVKAKI 276 (420)
T ss_dssp CCCHHHHHHHHTTTC--CCSEE
T ss_pred CCCHHHHHHHHHHHHHhcCCEE
Confidence 3446789999999999654
No 23
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=99.94 E-value=1.2e-25 Score=213.24 Aligned_cols=217 Identities=12% Similarity=0.083 Sum_probs=174.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCceeee
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHF 109 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~ 109 (269)
.|+++|++|++.+++.+.+++...+ .++++++|+|+++...+ +.+.++|+ +|.|++++|+..++++..++..|++
T Consensus 35 idl~~l~~n~~~l~~~~~~a~~~~~---~~~~~~~avKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I~~ 110 (434)
T 1twi_A 35 MSEEQIKINYNRYIEAFKRWEEETG---KEFIVAYAYKANANLAITRLLAKLGC-GADVVSGGELYIAKLSNVPSKKIVF 110 (434)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHS---CCEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCGGGEEE
T ss_pred EEHHHHHHHHHHHHHhhhhhhcccC---CCeEEEEEEccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHCCCCCCcEEE
Confidence 3999999999999999865555443 36899999999998777 66789999 9999999999999988433333488
Q ss_pred ecCC-ChhcHHhHhhcCCCccE-EEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCC------------CCCccCCChh
Q 024293 110 IGNL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSG------------EESKSGVEPS 175 (269)
Q Consensus 110 lG~~-~~~~~~~lv~~~~~~~l-~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~------------em~R~G~~~e 175 (269)
+|+. .+++++.++ .+++ +++|||.++++.|++.+.+.++ +++|+|+||+|. +|+|+|+.++
T Consensus 111 ~g~~k~~~~i~~a~----~~~i~~~~vds~~el~~l~~~a~~~~~-~~~v~lrvn~g~~~~~~~~~~tG~~~~rfG~~~~ 185 (434)
T 1twi_A 111 NGNCKTKEEIIMGI----EANIRAFNVDSISELILINETAKELGE-TANVAFRINPNVNPKTHPKISTGLKKNKFGLDVE 185 (434)
T ss_dssp CCSSCCHHHHHHHH----HTTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEEECCCCTTTCHHHHHHHHHSSCSEEST
T ss_pred ECCCCCHHHHHHHH----HCCCCEEEECCHHHHHHHHHHHHhcCC-CCeEEEEECCCCCCCCCcccccCCCCCCccCChh
Confidence 8986 468888887 3667 8999999999999999988888 999999999873 2699999998
Q ss_pred h--HHHHHHHHHhcCCCeEEEEeEeeCCCCC-C--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHH-HHcC
Q 024293 176 G--CLELVKHVSQNCPNLEFCGLMTIGMPDY-T--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELA-IEMG 249 (269)
Q Consensus 176 e--~~~~~~~i~~~~~~L~i~GlmTH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~-~~~~ 249 (269)
+ +.++++.+. .+|+|++.|||||+++.+ + ....+++++.++++.+++. |+++ ..+|+|++...+.. .+..
T Consensus 186 ~~~~~~~~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~--~~l~~GGg~~~~y~~~~~~ 261 (434)
T 1twi_A 186 SGIAMKAIKMAL-EMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE-GIEI--EDVNLGGGLGIPYYKDKQI 261 (434)
T ss_dssp TSHHHHHHHHHH-HCSSEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHT-TCCC--SEEECCCCBCCCSSSSSCC
T ss_pred hhHHHHHHHHHH-hCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCCC--CEEEECCCcCcCCCCCCCC
Confidence 8 999999999 999999999999998633 2 3356888999999998874 8765 67888766432210 0123
Q ss_pred CC------eeeeChhhh
Q 024293 250 ST------NVRIGSTIF 260 (269)
Q Consensus 250 ~~------~VR~G~aly 260 (269)
.| +||+|+..|
T Consensus 262 ~~~~~~~~~i~~~i~~~ 278 (434)
T 1twi_A 262 PTQKDLADAIINTMLKY 278 (434)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 44 688888887
No 24
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=99.93 E-value=3.6e-25 Score=209.88 Aligned_cols=209 Identities=14% Similarity=0.065 Sum_probs=167.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCC-CcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCCceee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPD-RIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDDLEWH 108 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~-~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I~~~ 108 (269)
|+++|++|++.+++.+ +. ++++++|+|+++...+ +.+.++|+ +|.|+++.|+..++++ ++.++ |+
T Consensus 39 dl~~i~~N~~~l~~~~----------~~~~~~l~~avKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~-i~ 106 (425)
T 2qgh_A 39 DFDKIKQAFLNYKEAF----------KGRKSLICYALKANSNLSILSLLAHLES-GADCVSIGEIQRALKAGIKPYR-IV 106 (425)
T ss_dssp EHHHHHHHHHHHHHTT----------CSSCEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGGG-EE
T ss_pred EHHHHHHHHHHHHHhc----------CcCCCEEEEEeccCCCHHHHHHHHHcCC-eEEEeCHHHHHHHHHcCCChhH-EE
Confidence 9999999999999987 43 6799999999998777 66779999 9999999999999988 54443 56
Q ss_pred eecCC-ChhcHHhHhhcCCCccE-EEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCC------------CCCCccCCCh
Q 024293 109 FIGNL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEESKSGVEP 174 (269)
Q Consensus 109 ~lG~~-~~~~~~~lv~~~~~~~l-~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG------------~em~R~G~~~ 174 (269)
+.|+. ++++++.+++ +++ ..+|||.++++.|++.+.+.++ +++|+|+||+| .+|+|+|+.+
T Consensus 107 ~~g~~k~~~~i~~a~~----~gv~~i~vds~~el~~l~~~a~~~~~-~~~v~lrvn~g~~~~~~~~~~tg~~~sRfG~~~ 181 (425)
T 2qgh_A 107 FSGVGKSAFEIEQALK----LNILFLNVESFMELKTIETIAQSLGI-KARISIRINPNIDAKTHPYISTGLKENKFGVGE 181 (425)
T ss_dssp ECCTTCCHHHHHHHHH----TTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEBCCCCCCCSCGGGBCCSTTSSSSBCH
T ss_pred EcCCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHHHHhcCC-CceEEEEEeCCCCCCCCcccccCCCCCCCcCCH
Confidence 77864 6789999883 555 4799999999999999988888 99999999986 4489999999
Q ss_pred hhHHHHHHHHHhcCCCeEEEEeEeeCCCCC-C--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCcc--CHHH----H
Q 024293 175 SGCLELVKHVSQNCPNLEFCGLMTIGMPDY-T--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSG--DFEL----A 245 (269)
Q Consensus 175 ee~~~~~~~i~~~~~~L~i~GlmTH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~--~~~~----~ 245 (269)
+++.++++.+. .+|+|++.|||||+++.+ + ....+++++.++++.+++ .|+++ ..+|+|+.. .|+. .
T Consensus 182 ~e~~~l~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~l~~GGG~~i~y~~~~~~~ 257 (425)
T 2qgh_A 182 KEALEMFLWAK-KSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIA-LGIDL--RFFDVGGGIGVSYENEETIK 257 (425)
T ss_dssp HHHHHHHHHHH-HCSSEEEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCCCBCCCTTSCCCCC
T ss_pred HHHHHHHHHHH-hCCCccEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEECCCcCcCCCCCCCCC
Confidence 99999999998 999999999999998643 3 345688899999998887 48765 678877553 2210 0
Q ss_pred HHcCCCeeeeChhhhC
Q 024293 246 IEMGSTNVRIGSTIFG 261 (269)
Q Consensus 246 ~~~~~~~VR~G~alyG 261 (269)
.+...++||+|+..||
T Consensus 258 ~~~~~~~v~~~i~~~~ 273 (425)
T 2qgh_A 258 LYDYAQGILNALQGLD 273 (425)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHhhcC
Confidence 0112456666666554
No 25
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=99.93 E-value=2e-25 Score=211.48 Aligned_cols=209 Identities=11% Similarity=0.050 Sum_probs=169.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCceeeee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~l 110 (269)
|+++|++|++.+++.+ +.++++++|+|+++...+ +.+.++| .+|.|+++.|+..++++..++-.|++.
T Consensus 23 d~~~l~~n~~~l~~~~----------~~~~~i~~avKan~~~~v~~~l~~~G-~g~~vas~~E~~~~~~~G~~~~~I~~~ 91 (428)
T 2j66_A 23 DGDFIEAHYRQLRSRT----------NPAIQFYLSLKANNNIHLAKLFRQWG-LGVEVASAGELALARHAGFSAENIIFS 91 (428)
T ss_dssp EHHHHHHHHHHHHHTS----------CTTEEEEEEGGGCCCHHHHHHHHHTT-CEEEESSHHHHHHHHHTTCCGGGEEEC
T ss_pred eHHHHHHHHHHHHHhc----------CCCcEEEEEeeeCCCHHHHHHHHHcC-CeEEEeCHHHHHHHHHcCCCcCeEEEe
Confidence 9999999999999987 557899999999998776 6677889 699999999999999884332234888
Q ss_pred cCCC-hhcHHhHhhcCCCccE-EEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCC-------------CccCCChh
Q 024293 111 GNLQ-SNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEE-------------SKSGVEPS 175 (269)
Q Consensus 111 G~~~-~~~~~~lv~~~~~~~l-~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em-------------~R~G~~~e 175 (269)
|+.+ +++++.++ .+++ +++|||.++++.|++.+.+.++ +++|+|+||+| | +|+|+.++
T Consensus 92 g~~k~~~~i~~a~----~~~v~~~~vds~~el~~l~~~a~~~~~-~~~V~lrvn~g--~~~~~~~~~~~~~~srfG~~~~ 164 (428)
T 2j66_A 92 GPGKKRSELEIAV----QSGIYCIIAESVEELFYIEELAEKENK-TARVAIRINPD--KSFGSTAIKMGGVPRQFGMDES 164 (428)
T ss_dssp CSCCCHHHHHHHH----HHTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEEECS--SCC--CCCSSSCCCCSSSEEGG
T ss_pred CCCCCHHHHHHHH----HCCCCEEEECCHHHHHHHHHHHHhhCC-CceEEEEEcCC--CCCCCCccccCCCCCCCCCCHH
Confidence 9865 57899888 3677 8999999999999999988888 89999999999 6 89999999
Q ss_pred hHHHHHHHHHhcCCCeEEEEeEeeCCCCC-C--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccC--HHH-----H
Q 024293 176 GCLELVKHVSQNCPNLEFCGLMTIGMPDY-T--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGD--FEL-----A 245 (269)
Q Consensus 176 e~~~~~~~i~~~~~~L~i~GlmTH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~--~~~-----~ 245 (269)
++.++++.+. .+|+|++.|||||+++.. + ....+++++.++++++++.+|+++ .++|+|++.. |.. .
T Consensus 165 e~~~~~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~l~~GGG~~i~y~~~~~~~~ 241 (428)
T 2j66_A 165 MLDAVMDAVR-SLQFTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVC--ECINLGGGFGVPYFSHEKALD 241 (428)
T ss_dssp GHHHHHHHHH-HCTTEEEEEEECCCCSCBCCHHHHHHHHHHHHHHHHHHHHHHCCCC--SEEECCCCBCCCCC--CCCCC
T ss_pred HHHHHHHHHH-hCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEeCCCcCcCCCCCCCCCC
Confidence 9999999999 999999999999988633 2 345678888888888854468765 6788776532 211 0
Q ss_pred HHcCCCeeeeChhhhC
Q 024293 246 IEMGSTNVRIGSTIFG 261 (269)
Q Consensus 246 ~~~~~~~VR~G~alyG 261 (269)
.+...++||+|+..|+
T Consensus 242 ~~~~~~~i~~~~~~~~ 257 (428)
T 2j66_A 242 IGKITRTVSDYVQEAR 257 (428)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 1123467888888774
No 26
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=99.91 E-value=2e-24 Score=207.18 Aligned_cols=213 Identities=15% Similarity=0.132 Sum_probs=168.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCceeee
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHF 109 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~ 109 (269)
.|+++|++|++.+++.+ ++++++++++|++....+ +.+.++|+ +|.|++..|+..++++.-++-.|++
T Consensus 47 id~~~l~~n~~~l~~~~----------~~~~~i~~avKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I~~ 115 (467)
T 2o0t_A 47 IDEDDFRSRCRETAAAF----------GSGANVHYAAKAFLCSEVARWISEEGL-CLDVCTGGELAVALHASFPPERITL 115 (467)
T ss_dssp EEHHHHHHHHHHHHHHT----------SSGGGBEEEGGGCCCHHHHHHHHHHTC-EEEECSHHHHHHHHHTTCCGGGEEE
T ss_pred EeHHHHHHHHHHHHHhc----------CCCcEEEEEeccCCCHHHHHHHHHcCC-eEEEeCHHHHHHHHHcCCCcccEEE
Confidence 39999999999999987 457899999999998776 66778999 9999999999999988333223478
Q ss_pred ecCCC-hhcHHhHhhcCCCccE-EEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCC------------CCCCccCCCh-
Q 024293 110 IGNLQ-SNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEESKSGVEP- 174 (269)
Q Consensus 110 lG~~~-~~~~~~lv~~~~~~~l-~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG------------~em~R~G~~~- 174 (269)
.|+.+ +++++.++ .+++ ..+|||+++++.|++.+.+.++ +++|+|+||+| .+|+|+|+.+
T Consensus 116 ~g~~k~~~~i~~a~----~~gv~~i~vds~~el~~l~~~a~~~~~-~~~v~lrvn~g~~~~~~~~~~~~~~~srfG~~~~ 190 (467)
T 2o0t_A 116 HGNNKSVSELTAAV----KAGVGHIVVDSMTEIERLDAIAGEAGI-VQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVA 190 (467)
T ss_dssp CCTTCCHHHHHHHH----HHTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEEECSEEEEETEEEEESSCCSSSSEETT
T ss_pred eCCCCCHHHHHHHH----HCCCCEEEECCHHHHHHHHHHHHhhCC-CCeEEEEEcCCCCCCCCcccccCCCCCCcCCcCC
Confidence 89864 58898888 3556 7899999999999999988888 89999999986 4589999987
Q ss_pred -hhHHHHHHHHHhcCCCeEEEEeEeeCCCC-C--CCcHHHHHHHHHHHHHHHHHcC----CCCCcceeecCCcc--CHHH
Q 024293 175 -SGCLELVKHVSQNCPNLEFCGLMTIGMPD-Y--TSTPENFKTLAKCRSEVCKALG----IPEEQCDLSMGMSG--DFEL 244 (269)
Q Consensus 175 -ee~~~~~~~i~~~~~~L~i~GlmTH~a~~-~--~~~~~~~~~~~~~~~~l~~~~g----~~~~~~~lS~G~s~--~~~~ 244 (269)
+++.++++.+. .+|+|++.|||+|+++. . +....+++++.++++++++.+| +++ ..+++|+.. +|+.
T Consensus 191 ~~e~~~~~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~--~~ln~GGG~~i~y~~ 267 (467)
T 2o0t_A 191 SGAAMAAVRRVF-ATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQI--ATVDLGGGLGISYLP 267 (467)
T ss_dssp TTHHHHHHHHHH-HCSSEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHSTTC--CEEECCCCBCCCSST
T ss_pred HHHHHHHHHHHH-hCCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CEEEeCCCcCcCCCC
Confidence 58999999998 99999999999998752 2 2345688889999888864467 765 677766543 3320
Q ss_pred -----HHHcCCCeeeeChh----hhCC
Q 024293 245 -----AIEMGSTNVRIGST----IFGA 262 (269)
Q Consensus 245 -----~~~~~~~~VR~G~a----lyG~ 262 (269)
..+...++||+|+. .||.
T Consensus 268 ~~~~~~~~~~~~~v~~~i~~~~~~~g~ 294 (467)
T 2o0t_A 268 SDDPPPIAELAAKLGTIVSDESTAVGL 294 (467)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 01123567788877 6665
No 27
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=99.91 E-value=2e-24 Score=201.07 Aligned_cols=200 Identities=12% Similarity=0.107 Sum_probs=160.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCC-Ccee
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPD-DLEW 107 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~-~I~~ 107 (269)
.|+++|++|++.+++.+ + ++++++|+|+++...+ +.+.++|+ +|+|++++|+..+|++ ++. +|
T Consensus 22 idl~~l~~N~~~l~~~~----------~-~~~~~~~vKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I-- 87 (372)
T 2nva_A 22 SSPKIVEDLIDQWTILF----------P-RVTPHYAVKCNNDEVLLKTMCDKNV-NFDCASSSEIKKVIQIGVSPSRI-- 87 (372)
T ss_dssp ECHHHHHHHHHHHHHHC----------T-TEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHHTCCGGGE--
T ss_pred EeHHHHHHHHHHHHHhC----------C-CCeEEEEeeeCCCHHHHHHHHHcCC-cEEEcCHHHHHHHHHcCCCHHHE--
Confidence 39999999999999876 3 6799999999998776 77789999 9999999999999988 444 35
Q ss_pred eeecCC-ChhcHHhHhhcCCCccEE-EeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCC--------CccCCChhhH
Q 024293 108 HFIGNL-QSNKVKPLLAGVPNLAMV-ESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEE--------SKSGVEPSGC 177 (269)
Q Consensus 108 ~~lG~~-~~~~~~~lv~~~~~~~l~-~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em--------~R~G~~~ee~ 177 (269)
++.|+. .+++++.++ .+++. .+|||.++++.|++.+. .++|+|+||+| | +|+|+.++++
T Consensus 88 ~~~~~~k~~~~l~~a~----~~~v~~~~vds~~~l~~l~~~~~-----~~~v~lrv~~~--~~~~~~~~~~R~G~~~~~~ 156 (372)
T 2nva_A 88 IFAHTMKTIDDLIFAK----DQGVDIATFDSSFELDKIHTYHP-----NCKMILRIRCD--DPNATVQLGNKFGANEDEI 156 (372)
T ss_dssp EECCSCCCHHHHHHHH----HHTCCEEEECSHHHHHHHHHHCT-----TCEEEEEBCCC--CTTCSBCCTTTSSBCGGGH
T ss_pred EECCCCCCHHHHHHHH----HCCCCEEEeCCHHHHHHHHHhCC-----CCeEEEEEecC--CCCCcccCCCCCCCCHHHH
Confidence 677876 568888888 35654 89999999999987653 47899999999 6 9999999999
Q ss_pred HHHHHHHHhcCCCeEEEEeEeeCCCCC-C--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCcc--CHH--HHHHcCC
Q 024293 178 LELVKHVSQNCPNLEFCGLMTIGMPDY-T--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSG--DFE--LAIEMGS 250 (269)
Q Consensus 178 ~~~~~~i~~~~~~L~i~GlmTH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~--~~~--~~~~~~~ 250 (269)
.++++.+. .+ +|++.|||||+++.+ + ....+++++.++++.+++ .|+++ ..+++|++. .|. ..++...
T Consensus 157 ~~~~~~~~-~~-~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~~~~GGg~~~~~~~~~~~~~~~ 231 (372)
T 2nva_A 157 RHLLEYAK-QL-DIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAIS-VGHKP--YILDIGGGLHADIDEGELSTYMS 231 (372)
T ss_dssp HHHHHHHH-HT-TCCEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHH-HTCCC--CEEECCSCBCCCCC---CCCHHH
T ss_pred HHHHHHHH-Hc-CCeEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--cEEEeCCCCCcCCCCCCCHHHHH
Confidence 99999998 77 999999999998744 2 234578888888888887 58875 566766553 220 0012346
Q ss_pred CeeeeChhhh
Q 024293 251 TNVRIGSTIF 260 (269)
Q Consensus 251 ~~VR~G~aly 260 (269)
++||+|+..|
T Consensus 232 ~~vr~~i~~y 241 (372)
T 2nva_A 232 DYINDAIKDF 241 (372)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8899999988
No 28
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=99.91 E-value=2.6e-24 Score=203.90 Aligned_cols=203 Identities=16% Similarity=0.213 Sum_probs=160.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCC-Cceee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPD-DLEWH 108 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~-~I~~~ 108 (269)
|+++|++|++.+++.+ + ++++++++|+++...+ +.+.++| .+|+|+++.|+..+|++ ++. +| +
T Consensus 61 dl~~l~~N~~~l~~~~----------~-~~~i~~avKAn~~~~v~~~l~~~G-~g~~vas~~E~~~~r~~G~~~~~I--l 126 (419)
T 2plj_A 61 DCDVIRQQYRALKNAL----------P-NVTLHYALKPLPHPVVVRTLLAEG-ASFDLATTGEVELVASEGVPADLT--I 126 (419)
T ss_dssp EHHHHHHHHHHHHHHS----------T-TEEEEEESTTCCCHHHHHHHHHHT-CEEEECSHHHHHHHHHTTCCGGGE--E
T ss_pred eHHHHHHHHHHHHHhC----------C-CCeEEEEeccCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChhhE--E
Confidence 9999999999999976 4 6899999999998776 7778899 89999999999999988 444 35 6
Q ss_pred eecCC-ChhcHHhHhhcCCCccEE-EeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCC------CCccCCChhhHHHH
Q 024293 109 FIGNL-QSNKVKPLLAGVPNLAMV-ESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------ESKSGVEPSGCLEL 180 (269)
Q Consensus 109 ~lG~~-~~~~~~~lv~~~~~~~l~-~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~e------m~R~G~~~ee~~~~ 180 (269)
+.|+. .+++++.++ .+++. ++|||.++++.|++.+. .++|+|+||||.+ |+|+|+.++++.++
T Consensus 127 ~~g~~k~~~~l~~a~----~~~v~~~~vds~~el~~l~~~a~-----~~~v~lrvd~g~~~~~~~~~~RfG~~~~e~~~~ 197 (419)
T 2plj_A 127 HTHPIKRDADIRDAL----AYGCNVFVVDNLNELEKFKAYRD-----DVELLVRLSFRNSEAFADLSKKFGCSPEQALVI 197 (419)
T ss_dssp ECCSSCCHHHHHHHH----HHTCCEEEECSHHHHHTTGGGTT-----TCEEEEEBCC---------CCCSCBCHHHHHHH
T ss_pred EeCCCCCHHHHHHHH----HCCCCEEEeCCHHHHHHHHHhcC-----CCCEEEEEcCCCCCCCCCCCCCCcCCHHHHHHH
Confidence 77874 568888887 35654 99999999999987652 4789999999865 89999999999999
Q ss_pred HHHHHhcCCCeEEEEeEeeCCCCC-C--CcHHHHHHHHHHHHHHHHHcCC-CCCcceeecCCcc--CHHH---HHHcCCC
Q 024293 181 VKHVSQNCPNLEFCGLMTIGMPDY-T--STPENFKTLAKCRSEVCKALGI-PEEQCDLSMGMSG--DFEL---AIEMGST 251 (269)
Q Consensus 181 ~~~i~~~~~~L~i~GlmTH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~-~~~~~~lS~G~s~--~~~~---~~~~~~~ 251 (269)
++.+. .+ +|++.|||||+++.+ + ....+++++.++++.+++ .|+ ++ ..+++|++. .|+. .++...+
T Consensus 198 ~~~~~-~~-~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~G~~~~--~~l~~GGG~~~~y~~~~~~~~~~~~ 272 (419)
T 2plj_A 198 IETAK-EW-NIRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVE-RGLPAL--STLDIGGGFPVNYTQQVMPIDQFCA 272 (419)
T ss_dssp HHHHH-HT-TCEEEEEECCCCTTCCCTHHHHHHHHHHHHHHHHHHH-TTCCCC--CEEECCCCCCCCSSSCCCCHHHHHH
T ss_pred HHHHH-hC-CCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCCC--CEEEECCCcCcCCCCCCCCHHHHHH
Confidence 99998 77 999999999999744 2 234578888888888886 588 54 567765543 2210 1123467
Q ss_pred eeeeChhhhCC
Q 024293 252 NVRIGSTIFGA 262 (269)
Q Consensus 252 ~VR~G~alyG~ 262 (269)
+||+|+..||.
T Consensus 273 ~vr~~i~~y~~ 283 (419)
T 2plj_A 273 PINEALSLLPE 283 (419)
T ss_dssp HHHHHHTTSCT
T ss_pred HHHHHHHhCCC
Confidence 89999999875
No 29
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima}
Probab=99.88 E-value=1.8e-23 Score=195.56 Aligned_cols=198 Identities=14% Similarity=0.156 Sum_probs=148.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCC-CcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCC-ce
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPD-RIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDD-LE 106 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~-~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~-I~ 106 (269)
.|+++|++|++.+++.+ +. ++++++|+|+++...+ +.+.++|+ +|+|++++||..+|++ ++.+ |
T Consensus 18 idl~~l~~N~~~l~~~~----------~~~~~~i~~avKAn~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I- 85 (386)
T 2yxx_A 18 YFEETLRKRSRLVKEVF----------EGVNLLPTFAVKANNNPVLLKILREEGF-GMDVVTKGELLAAKLAGVPSHTV- 85 (386)
T ss_dssp EEHHHHHHHHHHHHHHT----------TTSCEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCGGGE-
T ss_pred EEHHHHHHHHHHHHHhh----------ccCCceEEEEEeeCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHcCCChhhE-
Confidence 39999999999999987 44 5799999999998776 77789999 9999999999999988 5444 6
Q ss_pred eeeecCC-ChhcHHhHhhcCCCccE-EEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCC------------CCccCC
Q 024293 107 WHFIGNL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------------ESKSGV 172 (269)
Q Consensus 107 ~~~lG~~-~~~~~~~lv~~~~~~~l-~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~e------------m~R~G~ 172 (269)
++.|+. .+++++.++ .+++ ..+|+|.++++.|++.+.+ +++|+|+||+|.+ |+|+|+
T Consensus 86 -l~~~~~k~~~~l~~a~----~~~v~~~~vds~~el~~l~~~a~~----~~~v~lrv~~~~~~~~h~~i~tG~~~~RfG~ 156 (386)
T 2yxx_A 86 -VWNGNGKSRDQMEHFL----REDVRIVNVDSFEEMEIWRELNPE----GVEYFIRVNPEVDAKTHPHISTGLKKHKFGI 156 (386)
T ss_dssp -EECCSCCCHHHHHHHH----HTTCCEEEECCHHHHHHHHHHCCT----TCEEEEEEECCCCTTTSHHHHHHHHHSSSSE
T ss_pred -EEeCCCCCHHHHHHHH----HCCCCEEEeCCHHHHHHHHHhcCc----CCeEEEEECCCCCCCCCcccccCCCCCCCCC
Confidence 677874 678888888 4778 8999999999999887642 3678888775521 499999
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEEeEeeCCCCC-CC--cHHHHHHHHHHHHHHHHHcCCCCCcceeecCC-cc-CHH---H
Q 024293 173 EPSGCLELVKHVSQNCPNLEFCGLMTIGMPDY-TS--TPENFKTLAKCRSEVCKALGIPEEQCDLSMGM-SG-DFE---L 244 (269)
Q Consensus 173 ~~ee~~~~~~~i~~~~~~L~i~GlmTH~a~~~-~~--~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~-s~-~~~---~ 244 (269)
.+++ .++++ . .+|+|++.||+||+++.+ +. ...|+++|.++.+.+ + ..++++|+ .+ .|. .
T Consensus 157 ~~~~-~~~~~--~-~~~~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l------~--~~~~n~GGG~~~~~~~~~~ 224 (386)
T 2yxx_A 157 PLED-LDSFM--E-RFRSMNIRGLHVHIGSQITRVEPFVEAFSKVVRASERY------G--FEEINIGGGWGINYSGEEL 224 (386)
T ss_dssp EGGG-HHHHH--H-HHTTSCEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHH------T--CSEEECCCCBCCCSSSCCC
T ss_pred ChhH-HHHHh--h-ccCCCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhC------C--CCEEEECCCcCcCCCCCCC
Confidence 9988 88888 5 779999999999999754 22 234666666555544 1 24555333 22 110 0
Q ss_pred HHHcCCCeeeeChhhhC
Q 024293 245 AIEMGSTNVRIGSTIFG 261 (269)
Q Consensus 245 ~~~~~~~~VR~G~alyG 261 (269)
..+...++||+|+..|+
T Consensus 225 ~~~~~~~~vr~~i~~y~ 241 (386)
T 2yxx_A 225 DLSSYREKVVPDLKRFK 241 (386)
T ss_dssp CHHHHHHHTGGGGTTCS
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 01234678999999985
No 30
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=99.88 E-value=1.9e-22 Score=191.22 Aligned_cols=204 Identities=12% Similarity=0.069 Sum_probs=155.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCCceeee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDDLEWHF 109 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I~~~~ 109 (269)
|+++|++|++.+++.+ + ++++++++|+++...+ +.+.++| .+|+|+++.|+..++++ ++.++ +.+
T Consensus 44 dl~~l~~n~~~~~~~~----------~-~~~~~~avKAn~~~~v~~~l~~~G-~g~~vas~~E~~~~~~~G~~~~~-iv~ 110 (425)
T 1f3t_A 44 DLGDIVRKHETWKKCL----------P-RVTPFYAVKCNDDWRVLGTLAALG-TGFDCASNTEIQRVRGIGVPPEK-IIY 110 (425)
T ss_dssp EHHHHHHHHHHHHHHC----------T-TEEEEEEGGGCCCHHHHHHHHHTT-CEEEECSHHHHHHHHHTTCCGGG-EEE
T ss_pred eHHHHHHHHHHHHHhC----------C-CCeEEEEeeeCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChhh-EEE
Confidence 9999999999999876 4 5799999999998776 7778899 79999999999999988 55554 234
Q ss_pred ecCC-ChhcHHhHhhcCCCccE-EEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCC------CCccCCChhhHHHHH
Q 024293 110 IGNL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------ESKSGVEPSGCLELV 181 (269)
Q Consensus 110 lG~~-~~~~~~~lv~~~~~~~l-~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~e------m~R~G~~~ee~~~~~ 181 (269)
-|+. .+++++.++ .+++ ..+|||.++++.|++.+ . +++|||+||||.. |+|+|+.++++.+++
T Consensus 111 ~g~~k~~~~l~~a~----~~gv~~~~vds~~el~~l~~~~----~-~~~v~lrid~g~~~~~~~~~~RfG~~~~~~~~~~ 181 (425)
T 1f3t_A 111 ANPCKQISHIRYAR----DSGVDVMTFDCVDELEKVAKTH----P-KAKMVLRISTDDSLARCRLSVKFGAKVEDCRFIL 181 (425)
T ss_dssp CCSSCCHHHHHHHH----HTTCCEEEECSHHHHHHHHHHC----T-TCEEEEEBCC----------CCSCBCHHHHHHHH
T ss_pred cCCCCCHHHHHHHH----HCCCCEEEeCCHHHHHHHHHhC----C-CCcEEEEEcCCCCCccCCCCCcCCCCHHHHHHHH
Confidence 4765 467888887 3666 59999999999998764 3 6899999999822 799999999999999
Q ss_pred HHHHhcCCCeEEEEeEeeCCCCC-C--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHH----HHHHcCCCeee
Q 024293 182 KHVSQNCPNLEFCGLMTIGMPDY-T--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFE----LAIEMGSTNVR 254 (269)
Q Consensus 182 ~~i~~~~~~L~i~GlmTH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~----~~~~~~~~~VR 254 (269)
+.+. .+ +|++.||++|+++.+ + ....+++++..+++.+++ +|+++ ..+++|+..... ..++...++||
T Consensus 182 ~~~~-~~-~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~--~~l~iGGG~~~~~~~~~~~~~~~~~vr 256 (425)
T 1f3t_A 182 EQAK-KL-NIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTE-LGFNM--HILDIGGGFPGTRDAPLKFEEIAGVIN 256 (425)
T ss_dssp HHHH-HT-TCEEEEEECCCCSCCSCTHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCCCCCSSTTSSSCHHHHHHHHH
T ss_pred HHHH-hC-CCeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEeCCCcCCCCCCCCCHHHHHHHHH
Confidence 9998 76 999999999998743 2 223466677777777776 58875 566654432110 00234568999
Q ss_pred eChhhhCC
Q 024293 255 IGSTIFGA 262 (269)
Q Consensus 255 ~G~alyG~ 262 (269)
+|+..|..
T Consensus 257 ~~i~~~~~ 264 (425)
T 1f3t_A 257 NALEKHFP 264 (425)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhcC
Confidence 99999943
No 31
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=99.88 E-value=1.4e-21 Score=186.46 Aligned_cols=186 Identities=15% Similarity=0.140 Sum_probs=154.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCC-CcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCCceee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPD-RIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDDLEWH 108 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~-~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I~~~ 108 (269)
|+++|++|++.+++.+ +. ++++++++|+++...+ +.+.+.|+ +|.|+++.|+..++++ ++.+. ++
T Consensus 55 d~~~l~~n~~~l~~~~----------~~~~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~-I~ 122 (443)
T 3vab_A 55 SRATIERHFRVFHDAF----------ADMDTLVTYALKANSNQAVLTALAKLGA-GADTVSQGEIRRALAAGIPANR-IV 122 (443)
T ss_dssp EHHHHHHHHHHHHHHT----------TTSCEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGGG-EE
T ss_pred EHHHHHHHHHHHHHhh----------ccCCcEEEEEeccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCChhh-EE
Confidence 9999999999999987 43 5799999999988776 77788998 9999999999999988 44442 25
Q ss_pred eecC-CChhcHHhHhhcCCCccEE-EeeCcHHHHHHHHHHHHhcCCCceeEEEEEeC------------CCCCCccCCCh
Q 024293 109 FIGN-LQSNKVKPLLAGVPNLAMV-ESVDNEKIAGRLNRMVETMGRKPLKVLVQVNT------------SGEESKSGVEP 174 (269)
Q Consensus 109 ~lG~-~~~~~~~~lv~~~~~~~l~-~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDt------------G~em~R~G~~~ 174 (269)
+.|+ .++++++.++ .+++. .+|||.++++.|++.+.+.++ +++|+|+||+ |.+.+|+|+.+
T Consensus 123 ~~g~~k~~~ei~~a~----~~gv~~~~vds~~el~~l~~~a~~~~~-~~~V~lRVn~~~~~~~~~~i~tG~~~sRfGi~~ 197 (443)
T 3vab_A 123 FSGVGKTPREMDFAL----EAGIYCFNVESEPELEILSARAVAAGK-VAPVSLRINPDVDAKTHAKISTGKSENKFGIPR 197 (443)
T ss_dssp EECTTCCHHHHHHHH----HHTCSEEEECCHHHHHHHHHHHHHHTC-CEEEEEEEECCBCTTTCCBC---CCCCSSSEEG
T ss_pred EcCCCCCHHHHHHHH----HCCCCEEEECCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCCcccccCCCCCCCcCCH
Confidence 6787 4677888888 35654 899999999999999998888 9999999975 43449999999
Q ss_pred hhHHHHHHHHHhcCCCeEEEEeEeeCCCCC---CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCC
Q 024293 175 SGCLELVKHVSQNCPNLEFCGLMTIGMPDY---TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (269)
Q Consensus 175 ee~~~~~~~i~~~~~~L~i~GlmTH~a~~~---~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 238 (269)
+++.++++.+. .+|+|++.||++|+++.. +....+++++.++++++++ .|+++ .++++|+
T Consensus 198 ~e~~~ll~~~~-~~~~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~l~~-~G~~l--~~ldiGG 260 (443)
T 3vab_A 198 DKARAAYARAA-SLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQA-DGHNI--RHVDVGG 260 (443)
T ss_dssp GGHHHHHHHHH-HSTTEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCC
T ss_pred HHHHHHHHHHh-hCCCceEEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEeCC
Confidence 99999999998 999999999999998632 3456788899999998887 58765 7888764
No 32
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=99.88 E-value=1.6e-21 Score=186.00 Aligned_cols=187 Identities=17% Similarity=0.149 Sum_probs=156.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCC-CcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCCceee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPD-RIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDDLEWH 108 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~-~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I~~~ 108 (269)
|+++|++|++.+++.+ +. ++++++++|+++...+ +.+.+.|+ +|.|+++.|+..++++ ++.+. ++
T Consensus 58 dl~~l~~n~~~l~~~~----------~~~~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~-I~ 125 (441)
T 3n2b_A 58 SRATLERHWHAFDKSV----------GDYPHLICYAVKANSNLGVLNTLARLGS-GFDIVSVGELERVLAAGGDPSK-VV 125 (441)
T ss_dssp EHHHHHHHHHHHHHHT----------TTSCEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGGG-EE
T ss_pred EHHHHHHHHHHHHHhh----------ccCCcEEEEEeccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCCccc-EE
Confidence 9999999999999987 43 5799999999998776 77788998 9999999999999988 44442 25
Q ss_pred eecC-CChhcHHhHhhcCCCccE-EEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCC------------CCCCccCCCh
Q 024293 109 FIGN-LQSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEESKSGVEP 174 (269)
Q Consensus 109 ~lG~-~~~~~~~~lv~~~~~~~l-~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG------------~em~R~G~~~ 174 (269)
+.|+ .++++++.+++ +++ +.+|||.++++.|++.+.+.++ +++|+|+||+| .+++|+|+++
T Consensus 126 ~~g~~k~~~ei~~a~~----~gv~~~~vds~~el~~l~~~a~~~~~-~~~V~lRvn~~~~~~~~~~i~tG~~~sKfG~~~ 200 (441)
T 3n2b_A 126 FSGVGKTEAEMKRALQ----LKIKCFNVESEPELQRLNKVAGELGV-KAPISLRINPDVDAKTHPYISTGLRDNKFGITF 200 (441)
T ss_dssp ECCTTCCHHHHHHHHH----TTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEBCCCCCTTTCHHHHHHHHTSSSSBCG
T ss_pred EcCCCCCHHHHHHHHH----CCCCEEEEcCHHHHHHHHHHHHhcCC-CcEEEEEeccCCCcCCCcccccCCCCCcccCCH
Confidence 6686 45778888883 565 5899999999999999998888 99999999875 2369999999
Q ss_pred hhHHHHHHHHHhcCCCeEEEEeEeeCCCCC-C--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCc
Q 024293 175 SGCLELVKHVSQNCPNLEFCGLMTIGMPDY-T--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS 239 (269)
Q Consensus 175 ee~~~~~~~i~~~~~~L~i~GlmTH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s 239 (269)
+++.++++.+. .+|+|++.|||+|+++.. + ....+++++.++++++++ .|++. .++++|+-
T Consensus 201 ~~~~~~~~~~~-~~~~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~l~~-~G~~l--~~LdiGGG 264 (441)
T 3n2b_A 201 DRAAQVYRLAH-SLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKA-EGIHI--RHLDVGGG 264 (441)
T ss_dssp GGHHHHHHHHH-HCTTEEEEEEECCTTCSCCCHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCSC
T ss_pred HHHHHHHHHHh-cCCCeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEECCC
Confidence 99999999998 999999999999998642 2 445688889999998887 58765 78887653
No 33
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=99.85 E-value=6e-21 Score=182.27 Aligned_cols=201 Identities=14% Similarity=0.109 Sum_probs=156.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCCceeee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDDLEWHF 109 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I~~~~ 109 (269)
|+++|++|++.+++.+ + ++++++++|+++...+ +.+.++|+ +|.|+++.|+..++++ ++.++ +.+
T Consensus 44 d~~~l~~n~~~~~~~~----------~-~~~i~yavKAn~~~~v~~~l~~~G~-g~~vaS~~E~~~~~~aG~~~~~-iv~ 110 (448)
T 3btn_A 44 DLGKIVKKHSQWQTVV----------A-QIKPFYTVKCNSTPAVLEILAALGT-GFACSSKNEMALVQELGVSPEN-IIF 110 (448)
T ss_dssp EHHHHHHHHHHHHHHC----------T-TEEEEEEGGGCCCHHHHHHHHHHTC-EEEESSHHHHHHHHHTTCCGGG-EEE
T ss_pred eHHHHHHHHHHHHHhC----------C-CCeEEEEeeeCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCChhh-EEE
Confidence 9999999999999987 4 6799999999998776 77788995 9999999999999988 55554 234
Q ss_pred ecCC-ChhcHHhHhhcCCCccE-EEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCC------CCccCCChhhHHHHH
Q 024293 110 IGNL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------ESKSGVEPSGCLELV 181 (269)
Q Consensus 110 lG~~-~~~~~~~lv~~~~~~~l-~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~e------m~R~G~~~ee~~~~~ 181 (269)
-|+. ..++++.++ .+++ ..+|||.++++.|++.+ . +++|+|+||+|.+ |+|+|+.++++.+++
T Consensus 111 ~g~~k~~~ei~~a~----~~gv~~~~vds~~el~~l~~~~----~-~~~v~lRin~g~~~~~~~~~~RfG~~~~~~~~~~ 181 (448)
T 3btn_A 111 TSPCKQVSQIKYAA----KVGVNIMTCDNEIELKKIARNH----P-NAKVLLHIATEDNIGGEDGNMKFGTTLKNCRHLL 181 (448)
T ss_dssp CCSSCCHHHHHHHH----HHTCCEEEECSHHHHHHHHHHC----T-TCEEEEEBCCCC--------CCCCBCHHHHHHHH
T ss_pred cCCCCCHHHHHHHH----HcCCCEEEeCCHHHHHHHHHhC----C-CCeEEEEEecCCCccCCCCCCcCCCCHHHHHHHH
Confidence 4665 567788777 3666 58999999999998764 3 6899999999855 899999999999999
Q ss_pred HHHHhcCCCeEEEEeEeeCCCCC---CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCcc--CHHHHHHcCCCeeeeC
Q 024293 182 KHVSQNCPNLEFCGLMTIGMPDY---TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSG--DFELAIEMGSTNVRIG 256 (269)
Q Consensus 182 ~~i~~~~~~L~i~GlmTH~a~~~---~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~--~~~~~~~~~~~~VR~G 256 (269)
+.+. .+ +|++.||++|+++.+ +....+++++..+++.+++ +|+++ .++++|+.. .++ ..+...++||+|
T Consensus 182 ~~~~-~~-~l~~~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~~~~-~G~~~--~~ldiGGG~~~~~~-~~~~~~~~v~~~ 255 (448)
T 3btn_A 182 ECAK-EL-DVQIIGVKFHVSSACKEYQVYVHALSDARCVFDMAGE-FGFTM--NMLDIGGGFTGTEI-QLEEVNHVISPL 255 (448)
T ss_dssp HHHH-HH-TCEEEEEECCCCTTCCCTTHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCSCCCSCHH-HHHHHHHHHHHH
T ss_pred HHHH-hC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEeCCCcCCCCC-CHHHHHHHHHHH
Confidence 9988 77 899999999999743 2344577777788877776 68875 677654332 221 123456788888
Q ss_pred hhhh
Q 024293 257 STIF 260 (269)
Q Consensus 257 ~aly 260 (269)
+..|
T Consensus 256 i~~~ 259 (448)
T 3btn_A 256 LDIY 259 (448)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8877
No 34
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=179.92 Aligned_cols=204 Identities=14% Similarity=0.097 Sum_probs=156.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCCCceeee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDDLEWHF 109 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~~I~~~~ 109 (269)
|+++|++|++.+++.+ + +++++.++|+++...+ +.+.++| .+|.|+++.|+..++++ ++.++ +.+
T Consensus 54 Dl~~l~~n~~~l~~~~----------~-~~~i~yavKAn~~~~v~~~l~~~G-~g~dvaS~~E~~~~~~aG~~~~~-iv~ 120 (471)
T 2oo0_A 54 DLGDILKKHLRWLKAL----------P-RVTPFYAVKCNDSKAIVKTLAATG-TGFDCASKTEIQLVQSLGVPPER-IIY 120 (471)
T ss_dssp EHHHHHHHHHHHHHHC----------T-TEEEEEEGGGCCCHHHHHHHHHHT-CEEEECSHHHHHHHHHTTCCGGG-EEE
T ss_pred EHHHHHHHHHHHHHhC----------C-CCeEEEEEeeCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChhh-EEE
Confidence 9999999999999876 4 5799999999998776 7778899 89999999999999988 55444 234
Q ss_pred ecCC-ChhcHHhHhhcCCCccE-EEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCC------CCccCCChhhHHHHH
Q 024293 110 IGNL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------ESKSGVEPSGCLELV 181 (269)
Q Consensus 110 lG~~-~~~~~~~lv~~~~~~~l-~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~e------m~R~G~~~ee~~~~~ 181 (269)
-|+. ..++++.++ .+++ ..+|+|.++++.|++.+ . +++|+|+||||.. |+|+|+.++++.+++
T Consensus 121 ~g~~k~~~ei~~a~----~~gv~~~~vds~~el~~l~~~~----~-~~~V~lRvn~g~~~~~~~~~~RfG~~~~~~~~~~ 191 (471)
T 2oo0_A 121 ANPCKQVSQIKYAA----NNGVQMMTFDSEVELMKVARAH----P-KAKLVLRIATDDSKAVCRLSVKFGATLRTSRLLL 191 (471)
T ss_dssp CCSSCCHHHHHHHH----HTTCCEEEECSHHHHHHHHHHC----T-TCEEEEEECCCCTTSSBCCTTTSCBCHHHHHHHH
T ss_pred eCCCCCHHHHHHHH----HCCCCEEEECCHHHHHHHHHhC----C-CCeEEEEEcCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 4665 567788877 3566 48999999999998764 3 6899999999832 799999999999999
Q ss_pred HHHHhcCCCeEEEEeEeeCCCCC-C--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCH--H--HHHHcCCCeee
Q 024293 182 KHVSQNCPNLEFCGLMTIGMPDY-T--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDF--E--LAIEMGSTNVR 254 (269)
Q Consensus 182 ~~i~~~~~~L~i~GlmTH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~--~--~~~~~~~~~VR 254 (269)
+.+. .+ +|++.||++|+++.+ + ....+++++..+++.+++ +|+++ .+++.|+.... . ..++...++||
T Consensus 192 ~~~~-~~-~l~l~Glh~H~gs~~~~~~~~~~a~~~~~~~~~~~~~-~G~~~--~~ldiGGG~~~~~~~~~~~~~~~~~i~ 266 (471)
T 2oo0_A 192 ERAK-EL-NIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAE-VGFSM--YLLDIGGGFPGSEDVKLKFEEITGVIN 266 (471)
T ss_dssp HHHH-HT-TCEEEEEEECCCBSCCCTHHHHHHHHHHHHHHHHHHH-HTCCC--CEEECCCCCCSSSSSSSCHHHHHHHHH
T ss_pred HHHH-hC-CCcEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEECCCcCCCCCCCCCHHHHHHHHH
Confidence 9998 87 999999999999743 2 234567777778877776 58876 56665443211 0 00233457888
Q ss_pred eChhhhCC
Q 024293 255 IGSTIFGA 262 (269)
Q Consensus 255 ~G~alyG~ 262 (269)
+|+..|..
T Consensus 267 ~~l~~~~p 274 (471)
T 2oo0_A 267 PALDKYFP 274 (471)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHhc
Confidence 88888743
No 35
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=99.82 E-value=7e-20 Score=173.65 Aligned_cols=180 Identities=15% Similarity=0.130 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCC----C
Q 024293 31 ATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPD----D 104 (269)
Q Consensus 31 ~dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~----~ 104 (269)
.|+++|++|++.++ .+ + ++++++|++....+ +.+.++|+ .|+|+++.|+..++++ ++. +
T Consensus 31 idl~~l~~N~~~l~-~~----------~---~i~~avKAn~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~~~~ 95 (425)
T 1knw_A 31 YDAQIIRRQIAALK-QF----------D---VVRFAQKACSNIHILRLMREQGV-KVDSVSLGEIERALAAGYNPQTHPD 95 (425)
T ss_dssp EEHHHHHHHHHTTT-TS----------S---EEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCTTTCTT
T ss_pred EEHHHHHHHHHHHh-hC----------C---cceEeeecCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHcCCCCCCCcC
Confidence 39999999999998 76 4 89999999998776 77788996 7999999999999988 554 3
Q ss_pred ceeeeecC-CChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeE--------EEEEeCCCCCCccCCChh
Q 024293 105 LEWHFIGN-LQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKV--------LVQVNTSGEESKSGVEPS 175 (269)
Q Consensus 105 I~~~~lG~-~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V--------~lkIDtG~em~R~G~~~e 175 (269)
. +.+.|+ ..+++++.++ .+++..+|||.++++.|++.+.+.+. .++| |.++|||..|+|+|+.++
T Consensus 96 ~-Iv~~g~~k~~~~l~~a~----~~~i~~~vds~~el~~l~~~a~~~~v-~lRv~~~~~~~~h~~i~tG~~~~RfG~~~~ 169 (425)
T 1knw_A 96 D-IVFTADVIDQATLERVS----ELQIPVNAGSVDMLDQLGQVSPGHRV-WLRVNPGFGHGHSQKTNTGGENSKHGIWYT 169 (425)
T ss_dssp S-EEEEESCCCHHHHHHHH----HHTCCEEESSHHHHHHHHHHSTTCEE-EEEEECSCCSSCTTSCCSSSTTCCCSEEGG
T ss_pred e-EEEECCCCCHHHHHHHH----HcCCEEEECCHHHHHHHHHhhhhccE-EEEECCCCCCCCCcccccCCCCCCCcCCHH
Confidence 3 246675 5678888888 36777999999999999987653221 2222 333457766999999999
Q ss_pred hHHHHHHHHHhcCCCeEEEEeEeeCCCCCCC--cHHHHHHHHHHHHHHHHHcCCCCCcceeecCCc
Q 024293 176 GCLELVKHVSQNCPNLEFCGLMTIGMPDYTS--TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS 239 (269)
Q Consensus 176 e~~~~~~~i~~~~~~L~i~GlmTH~a~~~~~--~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s 239 (269)
++.++++.+. .+ +|++.||++|+++.++. ...+++++ ++.+.+ +|+++ ..+++|+.
T Consensus 170 ~~~~~~~~~~-~~-~l~l~Gl~~H~gs~~~~~~~~~~~~~~---~~~~~~-~G~~~--~~ln~GGG 227 (425)
T 1knw_A 170 DLPAALDVIQ-RH-HLQLVGIHMHIGSGVDYAHLEQVCGAM---VRQVIE-FGQDL--QAISAGGG 227 (425)
T ss_dssp GHHHHHHHHH-HT-TCEEEEEECCCCCTTCHHHHHHHHHHH---HHHHHH-HTCCC--SEEECCCC
T ss_pred HHHHHHHHHH-HC-CCCEEEEEEECCCCCCHHHHHHHHHHH---HHHHHH-hCCCC--cEEEeCCC
Confidence 9999999998 88 99999999999975532 12344444 333444 48765 56766543
No 36
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=99.80 E-value=9.8e-19 Score=165.91 Aligned_cols=179 Identities=14% Similarity=0.105 Sum_probs=141.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHc-CCC-Cceee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPD-DLEWH 108 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~-i~~-~I~~~ 108 (269)
|+++|++|++.+++.+ + ++++++++|++....+ +.+.+.|+ +|.|+++.|+..++++ ++. +| +
T Consensus 44 dl~~l~~n~~~~~~~~----------~-~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~I--i 109 (424)
T 7odc_A 44 DLGDILKKHLRWLKAL----------P-RVTPFYAVKCNDSRAIVSTLAAIGT-GFDCASKTEIQLVQGLGVPAERV--I 109 (424)
T ss_dssp EHHHHHHHHHHHHHHC----------T-TEEEEEEGGGCCCHHHHHHHHHHTC-EEEECSHHHHHHHHHTTCCGGGE--E
T ss_pred eHHHHHHHHHHHHHhC----------C-CCeEEEEeccCCcHHHHHHHHHcCC-cEEECCHHHHHHHHHcCCChhhE--E
Confidence 9999999999999987 4 6899999999998776 77788998 9999999999999888 544 35 5
Q ss_pred eecCC-ChhcHHhHhhcCCCccEE-EeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCC------CCCCccCCChhhHHHH
Q 024293 109 FIGNL-QSNKVKPLLAGVPNLAMV-ESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------GEESKSGVEPSGCLEL 180 (269)
Q Consensus 109 ~lG~~-~~~~~~~lv~~~~~~~l~-~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG------~em~R~G~~~ee~~~~ 180 (269)
+.|+. ..++++.++ .+++. .+|||.++++.|++.+ . .++|+|+||+| ..|+|+|++++++.++
T Consensus 110 ~~g~~k~~~ei~~a~----~~gv~~~~vds~~el~~l~~~~----~-~~~v~lRvn~~~~~~~~~~~skfG~~~~~~~~~ 180 (424)
T 7odc_A 110 YANPCKQVSQIKYAA----SNGVQMMTFDSEIELMKVARAH----P-KAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 180 (424)
T ss_dssp ECCSSCCHHHHHHHH----HTTCCEEEECSHHHHHHHHHHC----T-TCEEEEEBCC-----------CCCBCHHHHHHH
T ss_pred ECCCCCCHHHHHHHH----HCCCCEEEeCCHHHHHHHHHhC----C-CCeEEEEECCCCCCCCCCCCCCCCCCHHHHHHH
Confidence 67874 456888887 35553 6899999999998875 3 57899999996 2379999999999999
Q ss_pred HHHHHhcCCCeEEEEeEeeCCCCC-C--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCC
Q 024293 181 VKHVSQNCPNLEFCGLMTIGMPDY-T--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (269)
Q Consensus 181 ~~~i~~~~~~L~i~GlmTH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 238 (269)
++.+. . ++|++.||++|+++.. + ....+++.+.++++.+++ +|+++ .+++.|+
T Consensus 181 ~~~~~-~-~~l~l~Glh~H~gsq~~d~~~~~~a~~~~~~~~~~~~~-~G~~~--~~ldiGG 236 (424)
T 7odc_A 181 LERAK-E-LNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATE-VGFSM--HLLDIGG 236 (424)
T ss_dssp HHHHH-H-TTCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHHH-HTCCC--CEEECCC
T ss_pred HHHHH-h-CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEeCC
Confidence 99998 7 4899999999998632 2 344567777778877776 58875 6777653
No 37
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=99.68 E-value=3.6e-15 Score=147.14 Aligned_cols=198 Identities=10% Similarity=0.068 Sum_probs=148.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCC---CeeeeccHHHHHHHHHcCCCCcee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGH---RCFGENYVQEIVEKAAQLPDDLEW 107 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~---~~fgva~i~EA~~lr~~i~~~I~~ 107 (269)
|++.|++|++.+++.+..+.+..+- +.+.+++.++|++....+ +.+.+.|+ .+|.|++..|+...++++.++..+
T Consensus 51 D~d~L~~ni~~l~~af~~a~~~~~y-~g~~~i~YAVKAN~~~~Vl~~L~~~Ga~~g~G~dvaS~~El~~al~aG~~~~~I 129 (619)
T 3nzp_A 51 FPHLIQKQIENIYGNFNKARKEFGY-KGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPI 129 (619)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTC-CSCEEEEEEGGGCCCHHHHHHHHHHTGGGTCEEEECSHHHHHHHHHHSCTTSEE
T ss_pred cHHHHHHHHHHHHHHHHHHhhhccc-CCCEEEEEEEeccCcHHHHHHHHHhCCCCCceEEEeCHHHHHHHHhcCCCCCEE
Confidence 9999999999999998665444332 235789999999987665 77888897 589999999999888774433222
Q ss_pred eeecCCChhcHHhHh---hcCCCccEEEeeCcHHHHHHHHHHHHhcC-CCceeEEEEEe-----------CCCCCCccCC
Q 024293 108 HFIGNLQSNKVKPLL---AGVPNLAMVESVDNEKIAGRLNRMVETMG-RKPLKVLVQVN-----------TSGEESKSGV 172 (269)
Q Consensus 108 ~~lG~~~~~~~~~lv---~~~~~~~l~~~v~s~~~a~~L~~~a~~~~-~~~i~V~lkID-----------tG~em~R~G~ 172 (269)
.+-|+-..+.++.++ + ...++..+|||++.++.|.+.+.+.| + +.+|+|.|| ||+.++|+|+
T Consensus 130 v~nG~K~~e~I~~Al~a~~--~g~~v~ivVDS~~ELe~l~~~a~~~g~~-~~~V~LRInp~~~g~~~~~~TGg~~sKFGi 206 (619)
T 3nzp_A 130 TVNGFKDRELINIGFIAAE--MGHNITLTIEGLNELEAIIDIAKERFKP-KPNIGLRVRLHSAGVGIWAKSGGINSKFGL 206 (619)
T ss_dssp EECSCCCHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHTTSCSC-CCEEEEEBCCTTC-------------CCSB
T ss_pred EeCCCCCHHHHHHHHhhhh--cCCcEEEEECCHHHHHHHHHHHHHcCCC-CCEEEEEEecCCCCCcccccCCCCCccCcC
Confidence 344653444555543 1 12567899999999999999999888 7 899999997 4555799999
Q ss_pred ChhhHHHHHHHHHhcCCCe-EEEEeEeeCCCC--C-CCcHHHHHHHHHHHHHHHHHcCC-CCCcceeecC
Q 024293 173 EPSGCLELVKHVSQNCPNL-EFCGLMTIGMPD--Y-TSTPENFKTLAKCRSEVCKALGI-PEEQCDLSMG 237 (269)
Q Consensus 173 ~~ee~~~~~~~i~~~~~~L-~i~GlmTH~a~~--~-~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~lS~G 237 (269)
+++++.++++.+. +++++ .+.||++|.++. + +.....++.+.++++++++ .|+ +. .+++.|
T Consensus 207 ~~ee~~~ll~~l~-~~~~L~~l~GLHfHiGSqi~d~~~~~~al~~~~~l~~~L~~-~G~~~l--~~LDiG 272 (619)
T 3nzp_A 207 TSTELIEAVNLLK-ENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRK-MGAKNL--KAINLG 272 (619)
T ss_dssp CHHHHHHHHHHHH-HTTCTTTEEEEECCCCSCBCCSHHHHHHHHHHHHHHHHHHH-TTCTTC--CEEEEE
T ss_pred CHHHHHHHHHHHH-hCCCCCceeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH-hcCCCC--CEEEeC
Confidence 9999999999998 99999 599999999762 2 2345677788888888876 588 54 677654
No 38
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}
Probab=99.67 E-value=4.4e-15 Score=147.44 Aligned_cols=200 Identities=16% Similarity=0.126 Sum_probs=153.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCC-eeeeccHHHHHHHHHc-CCC-Ccee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHR-CFGENYVQEIVEKAAQ-LPD-DLEW 107 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~-~fgva~i~EA~~lr~~-i~~-~I~~ 107 (269)
|++.|++|++.+++.+..+....+- +.+.+++..+|++....+ +.+.+.|+. +|.|++..|+...+++ +.+ .+ +
T Consensus 92 D~d~Lr~ni~~l~~af~~a~~~~~Y-~~~~~i~YAvKAN~~~~Vl~~l~~~G~~~G~dvaS~gEl~~al~aG~~p~~i-I 169 (666)
T 3nzq_A 92 FPQILQHRLRSINAAFKRARESYGY-NGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLAHAGMTRSV-I 169 (666)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTC-CSCEEEEEEGGGCCCHHHHHHHHTSSSCEEEEESSHHHHHHHHHHHTTSCCE-E
T ss_pred CHHHHHHHHHHHHHHHHHhHHhhcc-cCCeEEEEEEeeCChHHHHHHHHHcCCCceEEEeCHHHHHHHHHcCCCCCcE-E
Confidence 9999999999999988654332221 235688889999987666 777889986 9999999999988887 554 33 2
Q ss_pred eeecCCChhcHHhHhhc-CCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEe-----------CCCCCCccCCChh
Q 024293 108 HFIGNLQSNKVKPLLAG-VPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVN-----------TSGEESKSGVEPS 175 (269)
Q Consensus 108 ~~lG~~~~~~~~~lv~~-~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkID-----------tG~em~R~G~~~e 175 (269)
.+-|.-..+.++.+++. ....++..+|||++.++.|.+.+.+.|+ +.+|+|.|+ ||++.+|+|+.++
T Consensus 170 v~nG~K~~eeI~~Al~~~~~G~~v~ivVDS~~ELe~L~~~A~~~g~-~~~V~LRVnp~~~~~~~~i~TG~~~SKFGi~~~ 248 (666)
T 3nzq_A 170 VCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNV-VPRLGVRARLASQGSGKWQSSGGEKSKFGLAAT 248 (666)
T ss_dssp EECSCCCHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHTTC-CCCEEEEBCCSSSCSSTTCSSSSSCCCSCBCHH
T ss_pred EEcCCCCHHHHHHHHHhhccCCCEEEEECCHHHHHHHHHHHHHcCC-CceEEEEEEecCCCCcCccccCCCCCcCcCCHH
Confidence 34465445667766520 0014677899999999999999999988 899999984 5645599999999
Q ss_pred hHHHHHHHHHhcCCCeE-EEEeEeeCCCCC---CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCC
Q 024293 176 GCLELVKHVSQNCPNLE-FCGLMTIGMPDY---TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (269)
Q Consensus 176 e~~~~~~~i~~~~~~L~-i~GlmTH~a~~~---~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 238 (269)
++.++++.+. ++++++ +.||++|.++.- +.....++.+.++++++++ .|++. ..+++|+
T Consensus 249 e~~~ll~~l~-~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~l~~~L~~-~G~~l--~~LDiGG 311 (666)
T 3nzq_A 249 QVLQLVETLR-EAGRLDSLQLLHFHLGSQMANIRDIATGVRESARFYVELHK-LGVNI--QCFDVGG 311 (666)
T ss_dssp HHHHHHHHHH-HTTCTTTEEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHT-TTCCC--CEEECCS
T ss_pred HHHHHHHHHH-hCCCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEeCC
Confidence 9999999998 999997 999999998632 2344567777788888875 58765 7787654
No 39
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=99.63 E-value=1.7e-14 Score=142.91 Aligned_cols=201 Identities=13% Similarity=0.128 Sum_probs=153.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCC------CeeeeccHHHHHHHHHc-CCC
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGH------RCFGENYVQEIVEKAAQ-LPD 103 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~------~~fgva~i~EA~~lr~~-i~~ 103 (269)
|++.|++|++.+++.+..+....+- +.+.+++..+|++....+ +.+.+.|+ .+|.|++..|+...+++ +++
T Consensus 70 D~d~L~~ni~~l~~af~~a~~~~~y-~~~~~i~YAvKAN~~~~Vl~~l~~~G~~~~~~g~GlDvaS~gEL~~al~aG~~~ 148 (648)
T 3n2o_A 70 FPQILHQRVHSICDAFNQAIEEYQY-PNKYLLVYPIKVNQQREVVDEILASQAQLETKQLGLEAGSKPELLAVLAMAQHA 148 (648)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTC-SSCEEECEEGGGCCCHHHHHHHHHHHHHSTTCCCEEEECSHHHHHHHHHHTSSS
T ss_pred eHHHHHHHHHHHHHHHHHHHHhhcc-cCCeEEEEEEeecCcHHHHHHHHHhCCccccCCceEEecCHHHHHHHHHcCCCC
Confidence 9999999999999988654322221 235789999999987665 77788874 88999999999988877 454
Q ss_pred CceeeeecCCChhcHHhHhhcC-CCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEe-----------CCCCCCccC
Q 024293 104 DLEWHFIGNLQSNKVKPLLAGV-PNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVN-----------TSGEESKSG 171 (269)
Q Consensus 104 ~I~~~~lG~~~~~~~~~lv~~~-~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkID-----------tG~em~R~G 171 (269)
+-.+.+-|.-..+.++.+++.. ...++..+|||++.++.|.+.|.+.|+ +.+|+|.|+ ||++.+|+|
T Consensus 149 e~iIv~nG~K~~eeI~~Al~~~~~G~~v~IvVDS~~EL~~I~~~A~~~g~-~~~V~LRInp~~~~~~~~i~TGg~~SKFG 227 (648)
T 3n2o_A 149 SSVIVCNGYKDREYIRLALIGEKLGHKVFIVLEKMSELDLVLREAKSLGV-TPRLGIRIRLASQGAGKWQASGGEKSKFG 227 (648)
T ss_dssp CCEEEECSCCCHHHHHHHHHHHHTTCEEEEEECSTHHHHHHHHHHHHHTC-CCEEEEEBCCSTTSTTTTCSSSSCCCCCC
T ss_pred CcEEEecCCCCHHHHHHHHHhhcCCCCEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEEECCCCCCCCccccCCCCCcCc
Confidence 3112344754555677665200 014577899999999999999999888 899999996 565569999
Q ss_pred CChhhHHHHHHHHHhcCCCeE-EEEeEeeCCCC--C-CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCC
Q 024293 172 VEPSGCLELVKHVSQNCPNLE-FCGLMTIGMPD--Y-TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (269)
Q Consensus 172 ~~~ee~~~~~~~i~~~~~~L~-i~GlmTH~a~~--~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 238 (269)
++++++.++++.+. .+++++ +.||++|.++. + +.....++.+.++++++++ .|++. ..+++|+
T Consensus 228 i~~~e~~~ll~~l~-~~~~L~~l~GLHfHiGSqi~d~~~~~~al~~~~~l~~~L~~-~G~~l--~~LDiGG 294 (648)
T 3n2o_A 228 LSASQVLNVISRLK-KENQLDTLQLVHFHLGSQMANIRDVRNGVNESARFYCELRT-LGANI--TYFDVGG 294 (648)
T ss_dssp BCHHHHHHHHHHHH-HTTCGGGEEEEECCCCSSBCCHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCS
T ss_pred CCHHHHHHHHHHHH-hCCCCCceEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--cEEEeCC
Confidence 99999999999998 999997 99999999763 2 2345567778888888876 58765 7787654
No 40
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=99.51 E-value=3.5e-14 Score=132.00 Aligned_cols=180 Identities=10% Similarity=-0.012 Sum_probs=115.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCceeeee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~l 110 (269)
|++.|++|++.+++.+.. ++++++.++|++....+ +.+.+.|+ .|.|+++.|+...++.++.+| ++.
T Consensus 10 d~~~l~~n~~~l~~~~~~---------~~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~~~~~i--i~~ 77 (365)
T 3mt1_A 10 DKAKLTRNMERIAHVREK---------SGAKALLALKCFATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKET--HAY 77 (365)
T ss_dssp EHHHHHHHHHHHHHHHHH---------HCCEEEEETTTCCCGGGHHHHTTTSC-EEEESSHHHHHHHHHHTCSEE--EEE
T ss_pred eHHHHHHHHHHHHHHHhh---------cCCEEEEEehhcCCHHHHHHHHHhCC-eEEECCHHHHHHHHhhCCCce--EEE
Confidence 899999999999998732 35799999999987665 67778887 799999999998877654445 667
Q ss_pred cCCC-hhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCC-------CceeEEEEEeCCCCCCccCCChhhHHHHHH
Q 024293 111 GNLQ-SNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-------KPLKVLVQVNTSGEESKSGVEPSGCLELVK 182 (269)
Q Consensus 111 G~~~-~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~-------~~i~V~lkIDtG~em~R~G~~~ee~~~~~~ 182 (269)
|+.. .++++.+++ .+...++||.++++.|.+.+.+... .....|.++|||...+|+|++++++.+.
T Consensus 78 ~~~k~~~el~~a~~----~g~~i~vds~~el~~l~~~a~~~~v~lRvnp~~~~~~~~~i~tg~~~sKFG~~~~~~~~~-- 151 (365)
T 3mt1_A 78 SVAYGDNEIDEVVS----HADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVER-- 151 (365)
T ss_dssp ESCCCTTTHHHHHH----HCSEEEESSHHHHHHHGGGGTTSEEEEEECCC----------------CCSBCCHHHHHT--
T ss_pred CCCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHhccCCEEEEEecCCCCCCCccccCCCCCCcCCCCHHHHhhh--
Confidence 7754 567888873 4556799999999999988764211 0223467788884449999999887642
Q ss_pred HHHhcCCCeEEEEeEeeCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCC
Q 024293 183 HVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (269)
Q Consensus 183 ~i~~~~~~L~i~GlmTH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 238 (269)
.++ ++.||++|.++.-. ..+.|.+..+...++...+|++. .++..|+
T Consensus 152 ----~l~--~~~Glh~HigSq~~-~~~~~~~~~~~~~~~~~~~g~~~--~~ldiGG 198 (365)
T 3mt1_A 152 ----VMD--RINGFMIHNNCENK-DFGLFDRMLGEIEERFGALIARV--DWVSLGG 198 (365)
T ss_dssp ----TGG--GCSEEEECCC--CC-SHHHHHHHHHHHHHHHHHHHTTS--SEEECCS
T ss_pred ----ccC--CeEEEEEeCCCCCC-CHHHHHHHHHHHHHHHHHhCCCC--CEEEeCC
Confidence 223 68999999986321 22334433333333322235543 6777654
No 41
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=99.44 E-value=4.2e-13 Score=127.03 Aligned_cols=174 Identities=9% Similarity=0.012 Sum_probs=123.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHH-HHHHHhCCCeeeeccHHHHHHHHHcCCCCceeeee
Q 024293 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (269)
Q Consensus 32 dl~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i-~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~l 110 (269)
|++.|++|++.+++.+.. .+++++.++|++....+ +.+.+.|+ .|.|+++.|+...++.++.+| ++.
T Consensus 50 d~~~l~~n~~~l~~~~~~---------~~~~i~yAvKAN~~~~vl~~l~~~G~-G~dvaS~~El~~a~~~~~~~I--i~~ 117 (418)
T 3n29_A 50 EEDKLRKNCELLASVGEK---------SGAKVLLALKGFAFSGAMKIVGEYLK-GCTCSGLWEAKFAKEYMDKEI--HTY 117 (418)
T ss_dssp EHHHHHHHHHHHHHHHHH---------HCCEEEEETTTCCCGGGHHHHHHHSC-EEEESSHHHHHHHHHHTCSEE--EEE
T ss_pred eHHHHHHHHHHHHHhhhh---------cCCEEEEEEccCCCHHHHHHHHHcCC-eEEECCHHHHHHHHhhCCCCE--EEE
Confidence 999999999999998832 25799999999887665 77778885 599999999998877654455 677
Q ss_pred cCCC-hhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEe------------CCCCCCccCCChhhH
Q 024293 111 GNLQ-SNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVN------------TSGEESKSGVEPSGC 177 (269)
Q Consensus 111 G~~~-~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkID------------tG~em~R~G~~~ee~ 177 (269)
|+.. .++++.+++ .++..++||+++++.|.+.+. +.+|.|+|| ||...+|+|++++++
T Consensus 118 ~~~k~~~el~~A~~----~g~~i~vds~~EL~~l~~~a~-----~~~v~lRvnp~~~~~~~~~i~tg~~~sKFGi~~~~~ 188 (418)
T 3n29_A 118 SPAFKEDEIGEIAS----LSHHIVFNSLAQFHKFQSKTQ-----KNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDF 188 (418)
T ss_dssp ESSCCHHHHHHHHH----HCSEEEESSHHHHHHHGGGCT-----TSEEEEEBCCCCC----------CTTCCSSBCGGGG
T ss_pred CCCCCHHHHHHHHH----cCCeEEECCHHHHHHHHHhcC-----CCCEEEEEeCCCCCCCCcccccCCCCCcCcCCHHHH
Confidence 7764 566887773 455679999999999987764 467788875 453349999999876
Q ss_pred HHHHHHHHhcCCCeEEEEeEeeCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCC
Q 024293 178 LELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (269)
Q Consensus 178 ~~~~~~i~~~~~~L~i~GlmTH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 238 (269)
.+ . .++ ++.||++|.++. .....|....+...++....|++. .++..|+
T Consensus 189 ~~-----~-~l~--~l~Glh~HigSq--~~~~~~~~~~~~~~~~~~~~g~~l--~~ldiGG 237 (418)
T 3n29_A 189 EN-----V-DLN--AIEGLHFHALCE--ESADALEAVLKVFEEKFGKWIGQM--KWVNFGG 237 (418)
T ss_dssp TT-----C-CCT--TCCEEECCCCSS--BCHHHHHHHHHHHHHHHGGGTTTC--SEEECCS
T ss_pred HH-----h-hcC--ceEEEEEecCCC--CCHHHHHHHHHHHHHHHHHhCCCC--CEEEeCC
Confidence 54 2 333 789999999865 233344443333333222245543 7777654
No 42
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=90.13 E-value=3 Score=35.38 Aligned_cols=167 Identities=17% Similarity=0.193 Sum_probs=85.4
Q ss_pred HHHHHHHHhCCCe--eeecc----------HHHHHHHHHcCCCCceeeeecCCCh-hcHHhHhhcCCCccEE-EeeC--c
Q 024293 73 SVIRQVYEAGHRC--FGENY----------VQEIVEKAAQLPDDLEWHFIGNLQS-NKVKPLLAGVPNLAMV-ESVD--N 136 (269)
Q Consensus 73 ~~i~~l~~~G~~~--fgva~----------i~EA~~lr~~i~~~I~~~~lG~~~~-~~~~~lv~~~~~~~l~-~~v~--s 136 (269)
+.++.+.+.|+++ +.+.- .+.+..+|+....++..|++.. ++ +.++.+.+. ..+.+ .-.. .
T Consensus 21 ~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~-dp~~~i~~~~~a--Gadgv~vh~e~~~ 97 (230)
T 1tqj_A 21 EEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIV-EPEKYVEDFAKA--GADIISVHVEHNA 97 (230)
T ss_dssp HHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESS-SGGGTHHHHHHH--TCSEEEEECSTTT
T ss_pred HHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEcc-CHHHHHHHHHHc--CCCEEEECccccc
Confidence 3456677788886 44420 2455555554443554466653 33 334444421 24443 2223 2
Q ss_pred HHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeEEEEeEeeCCC-C-CCCcHHHHHHH
Q 024293 137 EKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP-D-YTSTPENFKTL 214 (269)
Q Consensus 137 ~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~i~GlmTH~a~-~-~~~~~~~~~~~ 214 (269)
.+.....-+...+.|. .+-+. ++.+ .|.+. ++.+. ++..+.++||-++. + ..+....++++
T Consensus 98 ~~~~~~~~~~i~~~g~-~~gv~--~~p~--------t~~e~---~~~~~---~~~D~v~~msv~pg~ggq~~~~~~~~~i 160 (230)
T 1tqj_A 98 SPHLHRTLCQIRELGK-KAGAV--LNPS--------TPLDF---LEYVL---PVCDLILIMSVNPGFGGQSFIPEVLPKI 160 (230)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEE--ECTT--------CCGGG---GTTTG---GGCSEEEEESSCC----CCCCGGGHHHH
T ss_pred chhHHHHHHHHHHcCC-cEEEE--EeCC--------CcHHH---HHHHH---hcCCEEEEEEeccccCCccCcHHHHHHH
Confidence 2344555566666776 44443 4433 11111 22222 34568889998874 2 22333345555
Q ss_pred HHHHHHHHHHcCCCCCccee-ecCCc-cCHHHHHHcCCCeeeeChhhhCC
Q 024293 215 AKCRSEVCKALGIPEEQCDL-SMGMS-GDFELAIEMGSTNVRIGSTIFGA 262 (269)
Q Consensus 215 ~~~~~~l~~~~g~~~~~~~l-S~G~s-~~~~~~~~~~~~~VR~G~alyG~ 262 (269)
.++.+.+.+ .|++. ... -.|-+ .+.+.....|.|.+=+|++||+.
T Consensus 161 ~~lr~~~~~-~~~~~--~I~v~GGI~~~~~~~~~~aGad~vvvGSai~~a 207 (230)
T 1tqj_A 161 RALRQMCDE-RGLDP--WIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNA 207 (230)
T ss_dssp HHHHHHHHH-HTCCC--EEEEESSCCTTTTHHHHHHTCCEEEESHHHHTS
T ss_pred HHHHHHHHh-cCCCC--cEEEECCcCHHHHHHHHHcCCCEEEECHHHHCC
Confidence 555554444 35443 333 33322 23444456799999999999984
No 43
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=77.60 E-value=27 Score=29.99 Aligned_cols=170 Identities=11% Similarity=0.089 Sum_probs=87.7
Q ss_pred HHHHHHHHhCCCeeee----cc--------HHHHHHHHHcC-CCCceeeeecCCChhcHHhHhhcCCCccEEE-eeCcHH
Q 024293 73 SVIRQVYEAGHRCFGE----NY--------VQEIVEKAAQL-PDDLEWHFIGNLQSNKVKPLLAGVPNLAMVE-SVDNEK 138 (269)
Q Consensus 73 ~~i~~l~~~G~~~fgv----a~--------i~EA~~lr~~i-~~~I~~~~lG~~~~~~~~~lv~~~~~~~l~~-~v~s~~ 138 (269)
+.++.+.++|++++-+ .. .+--..+|+.. ..++-.|+.-.-+...++.+++. ..+++. -....+
T Consensus 44 ~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~a--GAd~itvH~Ea~~ 121 (246)
T 3inp_A 44 DDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKA--GATSIVFHPEASE 121 (246)
T ss_dssp HHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHH--TCSEEEECGGGCS
T ss_pred HHHHHHHHcCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHc--CCCEEEEccccch
Confidence 4567788889986543 11 12223345554 44555566533333455555531 245432 222223
Q ss_pred HHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeEEEEeEeeC-CCCC-CCcHHHHHHHHH
Q 024293 139 IAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG-MPDY-TSTPENFKTLAK 216 (269)
Q Consensus 139 ~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~i~GlmTH~-a~~~-~~~~~~~~~~~~ 216 (269)
.+.+.-+..++.|. ++-| -++.++ +.+.+. .+. +.+.+.-+||-. +.+. .+....++++.+
T Consensus 122 ~~~~~i~~ir~~G~-k~Gv--alnp~T-------p~e~l~----~~l---~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~ 184 (246)
T 3inp_A 122 HIDRSLQLIKSFGI-QAGL--ALNPAT-------GIDCLK----YVE---SNIDRVLIMSVNPGFGGQKFIPAMLDKAKE 184 (246)
T ss_dssp CHHHHHHHHHTTTS-EEEE--EECTTC-------CSGGGT----TTG---GGCSEEEEECSCTTC--CCCCTTHHHHHHH
T ss_pred hHHHHHHHHHHcCC-eEEE--EecCCC-------CHHHHH----HHH---hcCCEEEEeeecCCCCCcccchHHHHHHHH
Confidence 44455556677776 4444 566552 223322 222 234455577743 3332 233445666666
Q ss_pred HHHHHHHHcCCCCCcceeecCCcc-CHHHHHHcCCCeeeeChhhhCCC
Q 024293 217 CRSEVCKALGIPEEQCDLSMGMSG-DFELAIEMGSTNVRIGSTIFGAR 263 (269)
Q Consensus 217 ~~~~l~~~~g~~~~~~~lS~G~s~-~~~~~~~~~~~~VR~G~alyG~~ 263 (269)
+.+.+.+ .|.+.. ..+-.|-+. +.+...+.|.|.+=.|++||+..
T Consensus 185 lr~~~~~-~~~~~~-I~VDGGI~~~ti~~~~~aGAD~~V~GSaIf~a~ 230 (246)
T 3inp_A 185 ISKWISS-TDRDIL-LEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSD 230 (246)
T ss_dssp HHHHHHH-HTSCCE-EEEESSCCTTTHHHHHTTTCCEEEESHHHHTSS
T ss_pred HHHHHHh-cCCCee-EEEECCcCHHHHHHHHHcCCCEEEEehHHhCCC
Confidence 6665554 365421 223445443 34555678999999999999853
No 44
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=75.29 E-value=34 Score=28.37 Aligned_cols=177 Identities=16% Similarity=0.173 Sum_probs=87.4
Q ss_pred EEEEEecc--C-C-hHHHHHHHHhCCCeeeec--------c----HHHHHHHHHcCCCCceeeeecCCChhcHHhHhhcC
Q 024293 62 RIVAVSKT--K-P-VSVIRQVYEAGHRCFGEN--------Y----VQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGV 125 (269)
Q Consensus 62 ~l~aVvKa--h-g-~~~i~~l~~~G~~~fgva--------~----i~EA~~lr~~i~~~I~~~~lG~~~~~~~~~lv~~~ 125 (269)
.+.|=+=+ . . .+.++.+.+.|++++.+- . ++.+..+|+....++..|++..-+.+.+..+.+.
T Consensus 8 ~i~psi~a~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~~~a- 86 (228)
T 1h1y_A 8 KIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKA- 86 (228)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHH-
T ss_pred eEEEEeeeCCHHHHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEecCHHHHHHHHHHc-
Confidence 45555544 1 1 234567778899985444 1 5666667665533444455554233345555421
Q ss_pred CCccEE--EeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcC-CCeEEEEeEeeCCC
Q 024293 126 PNLAMV--ESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNC-PNLEFCGLMTIGMP 202 (269)
Q Consensus 126 ~~~~l~--~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~-~~L~i~GlmTH~a~ 202 (269)
..+.+ |.-.+.+.+...-+...+.|. + +.+-++.. -+.+. ++.+. .. ....+.++||.++.
T Consensus 87 -gad~v~vH~~~~~~~~~~~~~~i~~~g~-~--igv~~~p~-------t~~e~----~~~~~-~~~~~~d~vl~~sv~pg 150 (228)
T 1h1y_A 87 -GASGFTFHIEVSRDNWQELIQSIKAKGM-R--PGVSLRPG-------TPVEE----VFPLV-EAENPVELVLVMTVEPG 150 (228)
T ss_dssp -TCSEEEEEGGGCTTTHHHHHHHHHHTTC-E--EEEEECTT-------SCGGG----GHHHH-HSSSCCSEEEEESSCTT
T ss_pred -CCCEEEECCCCcccHHHHHHHHHHHcCC-C--EEEEEeCC-------CCHHH----HHHHH-hcCCCCCEEEEEeecCC
Confidence 25554 333332221333344455555 3 44445433 11122 22333 20 03457788887763
Q ss_pred -C-CCCcHHHHHHHHHHHHHHHHHc-CCCCCcceeecCCccC-HHHHHHcCCCeeeeChhhhCC
Q 024293 203 -D-YTSTPENFKTLAKCRSEVCKAL-GIPEEQCDLSMGMSGD-FELAIEMGSTNVRIGSTIFGA 262 (269)
Q Consensus 203 -~-~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~~lS~G~s~~-~~~~~~~~~~~VR~G~alyG~ 262 (269)
+ ..+....++.+.+ +++.. +++ ..+..|-+.+ .+.....|.|.+=+|+++|+.
T Consensus 151 ~~g~~~~~~~l~~i~~----~~~~~~~~p---i~v~GGI~~~ni~~~~~aGaD~vvvGsai~~~ 207 (228)
T 1h1y_A 151 FGGQKFMPEMMEKVRA----LRKKYPSLD---IEVDGGLGPSTIDVAASAGANCIVAGSSIFGA 207 (228)
T ss_dssp CSSCCCCGGGHHHHHH----HHHHCTTSE---EEEESSCSTTTHHHHHHHTCCEEEESHHHHTS
T ss_pred CCcccCCHHHHHHHHH----HHHhcCCCC---EEEECCcCHHHHHHHHHcCCCEEEECHHHHCC
Confidence 2 2222233344333 33322 111 2335555443 434456799999999999985
No 45
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=75.23 E-value=31 Score=29.17 Aligned_cols=146 Identities=14% Similarity=0.152 Sum_probs=74.5
Q ss_pred HHHHcCCCCceeeeecCCChhcHHhHhhcCCCccEEE-eeCc-HHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCC
Q 024293 96 EKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVE-SVDN-EKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVE 173 (269)
Q Consensus 96 ~lr~~i~~~I~~~~lG~~~~~~~~~lv~~~~~~~l~~-~v~s-~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~ 173 (269)
.+|+....++-.|+.-.-+...++.+++. ..+++. -... ...+.++-+.+++.|. ++-| -++.+ -+
T Consensus 51 ~lr~~~~~~~dvhLmv~dp~~~i~~~~~a--GAd~itvh~Ea~~~~~~~~i~~i~~~G~-k~gv--~lnp~-------tp 118 (231)
T 3ctl_A 51 QVKKLATKPLDCHLMVTRPQDYIAQLARA--GADFITLHPETINGQAFRLIDEIRRHDM-KVGL--ILNPE-------TP 118 (231)
T ss_dssp HHHTTCCSCEEEEEESSCGGGTHHHHHHH--TCSEEEECGGGCTTTHHHHHHHHHHTTC-EEEE--EECTT-------CC
T ss_pred HHHhccCCcEEEEEEecCHHHHHHHHHHc--CCCEEEECcccCCccHHHHHHHHHHcCC-eEEE--EEECC-------Cc
Confidence 34444334555566654223335555531 245432 2222 1235566667777776 5444 44554 12
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEeEeeCC-CCC-CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCc-cCHHHHHHcCC
Q 024293 174 PSGCLELVKHVSQNCPNLEFCGLMTIGM-PDY-TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS-GDFELAIEMGS 250 (269)
Q Consensus 174 ~ee~~~~~~~i~~~~~~L~i~GlmTH~a-~~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s-~~~~~~~~~~~ 250 (269)
.+.+ +.+. +.+.+.-+||--+ .+. .+....+++..++.+.+.+ .|...+ ..+-.|-+ .+.+.....|.
T Consensus 119 ~~~~----~~~l---~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~-~~~~~~-I~VdGGI~~~~~~~~~~aGA 189 (231)
T 3ctl_A 119 VEAM----KYYI---HKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWRER-EGLEYE-IEVDGSCNQATYEKLMAAGA 189 (231)
T ss_dssp GGGG----TTTG---GGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHH-HTCCCE-EEEESCCSTTTHHHHHHHTC
T ss_pred HHHH----HHHH---hcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhc-cCCCce-EEEECCcCHHHHHHHHHcCC
Confidence 2222 2222 2455666777554 332 3344456666665555544 255421 12234433 34555567899
Q ss_pred CeeeeC-hhhhCC
Q 024293 251 TNVRIG-STIFGA 262 (269)
Q Consensus 251 ~~VR~G-~alyG~ 262 (269)
|.+=.| +++|+.
T Consensus 190 d~~V~G~saif~~ 202 (231)
T 3ctl_A 190 DVFIVGTSGLFNH 202 (231)
T ss_dssp CEEEECTTTTGGG
T ss_pred CEEEEccHHHhCC
Confidence 999999 999984
No 46
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=65.18 E-value=7.1 Score=36.02 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=46.5
Q ss_pred eEEEEEeCCCCCCccCCC--hh--hHHHHHHHHHhcCCCeEEEEeEeeCCCCCCCcHHHHHHHHHHHHHHHHHcCCC---
Q 024293 156 KVLVQVNTSGEESKSGVE--PS--GCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIP--- 228 (269)
Q Consensus 156 ~V~lkIDtG~em~R~G~~--~e--e~~~~~~~i~~~~~~L~i~GlmTH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~--- 228 (269)
+...++|.- |.++||+ |+ ...+..++|. .....=+..|||=+-..++......++|.++.+..++ +|+.
T Consensus 17 ~~~~~~~~~--M~~LGiSvYp~~~~~~~~~~Yi~-~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~-~g~~vi~ 92 (385)
T 1x7f_A 17 NLYFQSNAM--ERKLGISLYPEHSTKEKDMAYIS-AAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKD-NNMEVIL 92 (385)
T ss_dssp --------C--CCEEEEEECGGGSCHHHHHHHHH-HHHTTTEEEEEEEECCC--------HHHHHHHHHHHH-TTCEEEE
T ss_pred ChhhhHHHH--HHheEEEEcCCCCCHHHHHHHHH-HHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHH-CCCEEEE
Confidence 456677777 9999997 33 3454445555 4444567889886632222223456667777776666 6863
Q ss_pred -CCccee-ecCCc-cCHHHHHHcCCCeeeeC
Q 024293 229 -EEQCDL-SMGMS-GDFELAIEMGSTNVRIG 256 (269)
Q Consensus 229 -~~~~~l-S~G~s-~~~~~~~~~~~~~VR~G 256 (269)
.+...+ -.|.| .++....+.|.+.+|.=
T Consensus 93 DVsp~~~~~Lg~s~~dl~~f~~lGi~gLRLD 123 (385)
T 1x7f_A 93 DVAPAVFDQLGISYSDLSFFAELGADGIRLD 123 (385)
T ss_dssp EECTTCC------CCCTHHHHHHTCSEEEES
T ss_pred ECCHHHHHHcCCCHHHHHHHHHcCCCEEEEc
Confidence 111333 25655 34444446799999964
No 47
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=60.98 E-value=74 Score=26.70 Aligned_cols=164 Identities=10% Similarity=0.050 Sum_probs=81.4
Q ss_pred HHHHHHHHhCCCeeeec--------c----HHHHHHHHHcC-CCCceeeeecCCChh-cHHhHhhcCCCccEEE-eeCcH
Q 024293 73 SVIRQVYEAGHRCFGEN--------Y----VQEIVEKAAQL-PDDLEWHFIGNLQSN-KVKPLLAGVPNLAMVE-SVDNE 137 (269)
Q Consensus 73 ~~i~~l~~~G~~~fgva--------~----i~EA~~lr~~i-~~~I~~~~lG~~~~~-~~~~lv~~~~~~~l~~-~v~s~ 137 (269)
+.++.+.++|++++-+- . +.....+|+.. +.++-.|+.-. ++. .+..++ . .+++. -....
T Consensus 22 ~~i~~~~~~g~d~iHvDvmDg~fvpn~t~G~~~v~~lr~~~p~~~~dvhLmv~-dp~~~i~~~~---~-Ad~itvH~ea~ 96 (227)
T 1tqx_A 22 EETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVE-YPEKYVPLLK---T-SNQLTFHFEAL 96 (227)
T ss_dssp HHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESS-CGGGGGGGCT---T-SSEEEEEGGGG
T ss_pred HHHHHHHHcCCCEEEEEEEeCCcCcchhcCHHHHHHHHHhCCCCcEEEEEEEc-CHHHHHHHHH---h-CCEEEEeecCC
Confidence 44567777888874221 1 33344455544 34444465543 333 333344 3 55442 22222
Q ss_pred H-HHHHHHH---HHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeEEEEeEeeCC-CCC-CCcHHHH
Q 024293 138 K-IAGRLNR---MVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM-PDY-TSTPENF 211 (269)
Q Consensus 138 ~-~a~~L~~---~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~i~GlmTH~a-~~~-~~~~~~~ 211 (269)
. ...+.-+ ..++.|. ++-| -++.+ -+.+. ++.+. .+..+.+.-+||-.+ .+. .+....+
T Consensus 97 ~~~~~~~i~~~~~i~~~G~-k~gv--alnp~-------tp~~~----~~~~l-~~g~~D~VlvmsV~pGf~gq~f~~~~l 161 (227)
T 1tqx_A 97 NEDTERCIQLAKEIRDNNL-WCGI--SIKPK-------TDVQK----LVPIL-DTNLINTVLVMTVEPGFGGQSFMHDMM 161 (227)
T ss_dssp TTCHHHHHHHHHHHHTTTC-EEEE--EECTT-------SCGGG----GHHHH-TTTCCSEEEEESSCTTCSSCCCCGGGH
T ss_pred ccCHHHHHHHHHHHHHcCC-eEEE--EeCCC-------CcHHH----HHHHh-hcCCcCEEEEeeeccCCCCcccchHHH
Confidence 2 3444445 6666776 4444 44544 12233 33444 322466777888655 332 2333445
Q ss_pred HHHHHHHHHHHHHcCCCCCcceeecCCcc-CHHHHHHcCCCeeeeChhhhCC
Q 024293 212 KTLAKCRSEVCKALGIPEEQCDLSMGMSG-DFELAIEMGSTNVRIGSTIFGA 262 (269)
Q Consensus 212 ~~~~~~~~~l~~~~g~~~~~~~lS~G~s~-~~~~~~~~~~~~VR~G~alyG~ 262 (269)
+++.++.+.+. ++. ..+..|-+. +.+...+.|.|.+=.|+++|+.
T Consensus 162 ~ki~~lr~~~~---~~~---I~VdGGI~~~ti~~~~~aGAd~~V~GsaIf~~ 207 (227)
T 1tqx_A 162 GKVSFLRKKYK---NLN---IQVDGGLNIETTEISASHGANIIVAGTSIFNA 207 (227)
T ss_dssp HHHHHHHHHCT---TCE---EEEESSCCHHHHHHHHHHTCCEEEESHHHHTC
T ss_pred HHHHHHHHhcc---CCe---EEEECCCCHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 55554333211 111 122444433 3444567899999999999985
No 48
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=55.46 E-value=44 Score=28.27 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=51.3
Q ss_pred CChHHHHHHHHhCCCeeee------------------------ccHHHHHHHHHcCCCCceeeee-cCCChhcHHhHhhc
Q 024293 70 KPVSVIRQVYEAGHRCFGE------------------------NYVQEIVEKAAQLPDDLEWHFI-GNLQSNKVKPLLAG 124 (269)
Q Consensus 70 hg~~~i~~l~~~G~~~fgv------------------------a~i~EA~~lr~~i~~~I~~~~l-G~~~~~~~~~lv~~ 124 (269)
.|...+..|..+|+..|.+ .+.+.+.+....+.+.+.+..+ ..+..+.+..++
T Consensus 39 lG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~-- 116 (251)
T 1zud_1 39 LGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAV-- 116 (251)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHH--
Confidence 5566567888899988876 4455554433334443322322 334455566666
Q ss_pred CCCccEEE-eeCcHHHHHHHHHHHHhcCC
Q 024293 125 VPNLAMVE-SVDNEKIAGRLNRMVETMGR 152 (269)
Q Consensus 125 ~~~~~l~~-~v~s~~~a~~L~~~a~~~~~ 152 (269)
..+|++. +.|+.+.-..|++.+.+.++
T Consensus 117 -~~~DvVi~~~d~~~~r~~l~~~~~~~~~ 144 (251)
T 1zud_1 117 -ARADVVLDCTDNMATRQEINAACVALNT 144 (251)
T ss_dssp -HHCSEEEECCSSHHHHHHHHHHHHHTTC
T ss_pred -hcCCEEEECCCCHHHHHHHHHHHHHhCC
Confidence 3578665 67899888889999988776
No 49
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=46.36 E-value=41 Score=28.54 Aligned_cols=71 Identities=8% Similarity=0.024 Sum_probs=41.5
Q ss_pred CCeEEEEeEeeCC-CCC-CCcHHHHHHHHHHHHHHHHHcCCCCCccee-ecCCcc-CHHHHHH--cCCCeeeeChhhhCC
Q 024293 189 PNLEFCGLMTIGM-PDY-TSTPENFKTLAKCRSEVCKALGIPEEQCDL-SMGMSG-DFELAIE--MGSTNVRIGSTIFGA 262 (269)
Q Consensus 189 ~~L~i~GlmTH~a-~~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~l-S~G~s~-~~~~~~~--~~~~~VR~G~alyG~ 262 (269)
+.+.+.++||--+ .+. .+....++++.++.+.+.+ .|... ... -.|-+. +.+.... .|.|.+=+|++||+.
T Consensus 147 ~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~-~~~~~--~I~vdGGI~~~~~~~~~~~~aGad~~VvGSaIf~~ 223 (237)
T 3cu2_A 147 DQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGN-RRVEK--LINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG 223 (237)
T ss_dssp TTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGG-GGGGC--EEEEESSCCHHHHHHHHHSSSCCCCEEECGGGGSS
T ss_pred hcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHh-cCCCc--eEEEECCcCHHHHHHHHHhCCCCcEEEEeeHHhCC
Confidence 4566777877554 332 3444566666665554433 23332 222 333332 3444568 899999999999985
No 50
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=31.80 E-value=1.9e+02 Score=24.16 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=47.1
Q ss_pred CChHHHHHHHHhCCCeeee------------------------ccHHHHHHHHHcCCCCceeeee-cCCChhcHHhHhhc
Q 024293 70 KPVSVIRQVYEAGHRCFGE------------------------NYVQEIVEKAAQLPDDLEWHFI-GNLQSNKVKPLLAG 124 (269)
Q Consensus 70 hg~~~i~~l~~~G~~~fgv------------------------a~i~EA~~lr~~i~~~I~~~~l-G~~~~~~~~~lv~~ 124 (269)
.|...+..|..+|+..+.+ .+.+.+.+....+.+.+.+..+ +.+..+.+..++
T Consensus 42 ~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~-- 119 (249)
T 1jw9_B 42 LGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALI-- 119 (249)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccCCHhHHHHHH--
Confidence 3445557778889877664 3444444333333333322222 334444555565
Q ss_pred CCCccEE-EeeCcHHHHHHHHHHHHhcCC
Q 024293 125 VPNLAMV-ESVDNEKIAGRLNRMVETMGR 152 (269)
Q Consensus 125 ~~~~~l~-~~v~s~~~a~~L~~~a~~~~~ 152 (269)
..+|++ .+.++.+.-..+++.+.+.++
T Consensus 120 -~~~DvVi~~~d~~~~~~~l~~~~~~~~~ 147 (249)
T 1jw9_B 120 -AEHDLVLDCTDNVAVRNQLNAGCFAAKV 147 (249)
T ss_dssp -HTSSEEEECCSSHHHHHHHHHHHHHHTC
T ss_pred -hCCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 357754 567888877789999888775
No 51
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=30.58 E-value=2.3e+02 Score=23.51 Aligned_cols=117 Identities=12% Similarity=0.091 Sum_probs=63.1
Q ss_pred cEEEEEeccCCh-HHHHHHHHhCCCeeee------ccHHHHHHHHHcCCCCceeeeecC-CChhcHHhHhhcCCCccEEE
Q 024293 61 IRIVAVSKTKPV-SVIRQVYEAGHRCFGE------NYVQEIVEKAAQLPDDLEWHFIGN-LQSNKVKPLLAGVPNLAMVE 132 (269)
Q Consensus 61 ~~l~aVvKahg~-~~i~~l~~~G~~~fgv------a~i~EA~~lr~~i~~~I~~~~lG~-~~~~~~~~lv~~~~~~~l~~ 132 (269)
..+-++.|.-.. ..+..+.++|++.+.+ ..+.+.++..+..+..+- ..+.| .+.+.+..++ ...|++.
T Consensus 58 ~~~dvhLmv~dp~~~i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~g-v~lnp~tp~~~~~~~l---~~~D~Vl 133 (231)
T 3ctl_A 58 KPLDCHLMVTRPQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVG-LILNPETPVEAMKYYI---HKADKIT 133 (231)
T ss_dssp SCEEEEEESSCGGGTHHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEE-EEECTTCCGGGGTTTG---GGCSEEE
T ss_pred CcEEEEEEecCHHHHHHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEE-EEEECCCcHHHHHHHH---hcCCEEE
Confidence 458888888443 3467888999999752 345566655444332221 22333 3444555554 2355443
Q ss_pred --eeC-----------cHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeEEEE
Q 024293 133 --SVD-----------NEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCG 195 (269)
Q Consensus 133 --~v~-----------s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~i~G 195 (269)
+|+ .++-++.|.+...+.|. ++.|.+|=| +.++.+..+++.= .++-+.|
T Consensus 134 vmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~---~~~I~VdGG-------I~~~~~~~~~~aG----Ad~~V~G 195 (231)
T 3ctl_A 134 VMTVDPGFAGQPFIPEMLDKLAELKAWREREGL---EYEIEVDGS-------CNQATYEKLMAAG----ADVFIVG 195 (231)
T ss_dssp EESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTC---CCEEEEESC-------CSTTTHHHHHHHT----CCEEEEC
T ss_pred EeeeccCcCCccccHHHHHHHHHHHHHHhccCC---CceEEEECC-------cCHHHHHHHHHcC----CCEEEEc
Confidence 222 23333445554443333 456778765 8888877665432 2455555
No 52
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=30.02 E-value=2.3e+02 Score=23.80 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=36.6
Q ss_pred EEEEEeccCChHHHHHHHHhCCCeeeeccH--------------HHHHHHHHcCCCCceeeeecCCChhcHHhHhh
Q 024293 62 RIVAVSKTKPVSVIRQVYEAGHRCFGENYV--------------QEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLA 123 (269)
Q Consensus 62 ~l~aVvKahg~~~i~~l~~~G~~~fgva~i--------------~EA~~lr~~i~~~I~~~~lG~~~~~~~~~lv~ 123 (269)
.++.++ .|..+++..+.+.|+++++++.+ +....+++....++.+..+|-+.++.+..+.+
T Consensus 136 ~~iG~S-~ht~~Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~ 210 (243)
T 3o63_A 136 TLIGRS-THDPDQVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGINAQRLPAVLD 210 (243)
T ss_dssp CEEEEE-ECSHHHHHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSCCTTTHHHHHH
T ss_pred CEEEEe-CCCHHHHHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCCCHHHHHHHHH
Confidence 355554 48888887777899999988542 11222222211233336678788888888874
No 53
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=26.92 E-value=3e+02 Score=24.34 Aligned_cols=107 Identities=12% Similarity=0.171 Sum_probs=57.5
Q ss_pred HHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeEEEEeEeeCCCCCC---CcHHHHHHHHHHHH
Q 024293 143 LNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYT---STPENFKTLAKCRS 219 (269)
Q Consensus 143 L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~i~GlmTH~a~~~~---~~~~~~~~~~~~~~ 219 (269)
+....+..|. .++|.+++...+ ....|...++...+++.+. .. +.+.-+ +|....+. ..... +..+..
T Consensus 200 v~aVr~avg~-d~pv~vRls~~~-~~~~g~~~~~~~~~a~~l~-~~--vd~i~v-s~g~~~~~~~~~~~~~---~~~~~~ 270 (343)
T 3kru_A 200 IDEVRKNWPE-NKPIFVRVSADD-YMEGGINIDMMVEYINMIK-DK--VDLIDV-SSGGLLNVDINLYPGY---QVKYAE 270 (343)
T ss_dssp HHHHHHTSCT-TSCEEEEEECCC-SSTTSCCHHHHHHHHHHHT-TT--CSEEEE-ECCCSSCCCCCCCTTT---THHHHH
T ss_pred HHHHHhcCCc-cCCeEEEeechh-hhccCccHHHHHHHHHHhh-cc--ccEEec-cCCceEeeeecccCce---eehHHH
Confidence 3333344454 578889998752 4455888889999999887 53 322211 23322110 00000 112233
Q ss_pred HHHHHcCCCCCcceeecCCccCHH---HHHHcC-CCeeeeChhhhCC
Q 024293 220 EVCKALGIPEEQCDLSMGMSGDFE---LAIEMG-STNVRIGSTIFGA 262 (269)
Q Consensus 220 ~l~~~~g~~~~~~~lS~G~s~~~~---~~~~~~-~~~VR~G~alyG~ 262 (269)
.+++..++ +.+..|...+.. ..+..| .|+|=+|..++.+
T Consensus 271 ~ir~~~~i----PVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~lan 313 (343)
T 3kru_A 271 TIKKRCNI----KTSAVGLITTQELAEEILSNERADLVALGRELLRN 313 (343)
T ss_dssp HHHHHHTC----EEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred HHHHhcCc----ccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhcC
Confidence 45543333 455556543332 234555 8999999998764
No 54
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} SCOP: c.70.1.1 PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A*
Probab=25.38 E-value=1.4e+02 Score=26.50 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=30.8
Q ss_pred cCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCC-eEEEEeEeeCCCC
Q 024293 150 MGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPN-LEFCGLMTIGMPD 203 (269)
Q Consensus 150 ~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~-L~i~GlmTH~a~~ 203 (269)
+|- .++|+|..|+| .+|+..++-.+ ..|. +++.||-|=+++.
T Consensus 10 ~~~-~~~vilD~DpG---------iDDa~AL~~al--~~p~~iel~gITtv~GN~ 52 (338)
T 3epw_A 10 HGS-AKNVVLDHDGN---------LDDFVAMVLLA--SNTEKVRLIGALCTDADC 52 (338)
T ss_dssp ----CEEEEEEECCS---------HHHHHHHHHHH--HCTTTEEEEEEEECSSSS
T ss_pred cCc-cceEEEECCCC---------hHHHHHHHHHH--hCCCCeEEEEEEEeCCCC
Confidence 344 78999999988 27777776665 5699 9999998877753
No 55
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=22.29 E-value=3.7e+02 Score=23.01 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=35.5
Q ss_pred CcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeEEEEeEeeC
Q 024293 135 DNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG 200 (269)
Q Consensus 135 ~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~i~GlmTH~ 200 (269)
.+++.+..+-+.+.+.|. . .+.|. ||-+ . ..|.+..++++.+.+..|++.+ |+.+|-
T Consensus 156 ~~~~~~~~~~~~~~~~G~-d-~i~l~-DT~G-~----~~P~~~~~lv~~l~~~~~~~~l-~~H~Hn 212 (302)
T 2ftp_A 156 VDPRQVAWVARELQQMGC-Y-EVSLG-DTIG-V----GTAGATRRLIEAVASEVPRERL-AGHFHD 212 (302)
T ss_dssp CCHHHHHHHHHHHHHTTC-S-EEEEE-ESSS-C----CCHHHHHHHHHHHTTTSCGGGE-EEEEBC
T ss_pred CCHHHHHHHHHHHHHcCC-C-EEEEe-CCCC-C----cCHHHHHHHHHHHHHhCCCCeE-EEEeCC
Confidence 567777777777777775 2 34444 7752 2 3688888888888735555543 454444
No 56
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=22.24 E-value=4e+02 Score=23.34 Aligned_cols=66 Identities=6% Similarity=0.037 Sum_probs=32.9
Q ss_pred ChhcHHhHhhc-CCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcC
Q 024293 114 QSNKVKPLLAG-VPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNC 188 (269)
Q Consensus 114 ~~~~~~~lv~~-~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~ 188 (269)
..+.++.+.+. .+...+...+...+.+...-+.+++.|. .+.+.+. |+. ..+|+.+.++++.+. .+
T Consensus 95 ~~~~i~~a~~aGvd~v~I~~~~s~~~~~~~~i~~ak~~G~-~v~~~~~-~a~------~~~~e~~~~ia~~~~-~~ 161 (345)
T 1nvm_A 95 SVHDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGM-DTVGFLM-MSH------MIPAEKLAEQGKLME-SY 161 (345)
T ss_dssp CHHHHHHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTC-EEEEEEE-STT------SSCHHHHHHHHHHHH-HH
T ss_pred cHHHHHHHHhCCcCEEEEEEeccHHHHHHHHHHHHHHCCC-EEEEEEE-eCC------CCCHHHHHHHHHHHH-HC
Confidence 34555555432 1112222333333455556666777776 5444432 221 245677777777776 54
No 57
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=20.92 E-value=2.1e+02 Score=25.48 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCC----------hHH-HHHHHHhCCCeeeecc----------HHHH
Q 024293 36 AATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKP----------VSV-IRQVYEAGHRCFGENY----------VQEI 94 (269)
Q Consensus 36 l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg----------~~~-i~~l~~~G~~~fgva~----------i~EA 94 (269)
+.+..+.+.+.++++.+.+|..+-.++|.+.-..++ ... ++.+.++|++++.+.. ++-+
T Consensus 207 lenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~ 286 (364)
T 1vyr_A 207 VENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFR 286 (364)
T ss_dssp HHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHH
T ss_pred hhcChhhHHHHHHHHHHhcCCCcEEEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCCcccHHHH
Confidence 566777777777777777763222233333221222 122 3566788999998864 2333
Q ss_pred HHHHHcCCCCceeeeecCCChhcHHhHhhcCCCccEE
Q 024293 95 VEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMV 131 (269)
Q Consensus 95 ~~lr~~i~~~I~~~~lG~~~~~~~~~lv~~~~~~~l~ 131 (269)
..+++....|+ ...|-+.++.+..+++. ...|++
T Consensus 287 ~~v~~~~~iPv--i~~Ggit~~~a~~~l~~-g~aD~V 320 (364)
T 1vyr_A 287 QKVRERFHGVI--IGAGAYTAEKAEDLIGK-GLIDAV 320 (364)
T ss_dssp HHHHHHCCSEE--EEESSCCHHHHHHHHHT-TSCSEE
T ss_pred HHHHHHCCCCE--EEECCcCHHHHHHHHHC-CCccEE
Confidence 44555555454 34466677777777641 125654
No 58
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=20.65 E-value=71 Score=21.23 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=21.8
Q ss_pred CccCCChhhHHHHHHHHHhcCCCeEEEE
Q 024293 168 SKSGVEPSGCLELVKHVSQNCPNLEFCG 195 (269)
Q Consensus 168 ~R~G~~~ee~~~~~~~i~~~~~~L~i~G 195 (269)
.++||+.+++..++..+. +-.-|++++
T Consensus 33 ~kygV~kdeV~~~LrrLe-~KGLI~le~ 59 (59)
T 2xvc_A 33 KVYGVEKQEVVKLLEALK-NKGLIAVES 59 (59)
T ss_dssp HHHCCCHHHHHHHHHHHH-HTTSEEEEC
T ss_pred HHhCCCHHHHHHHHHHHH-HCCCeeccC
Confidence 789999999999999997 655566653
Done!