BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024294
(269 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M367|BECN1_ARATH Beclin-1-like protein OS=Arabidopsis thaliana GN=At3g61710 PE=2
SV=2
Length = 517
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/267 (72%), Positives = 222/267 (83%), Gaps = 2/267 (0%)
Query: 1 MKKEDAPDKGRTLSVDPNVPRWVCQNCRHFLCIVGVDSYADKYLNDSSRSTMHGSSIHAS 60
M+KE+ PDK RT+ +DPN+P+WVCQNC H L IVGVDSYA K+ ND S GSSIH +
Sbjct: 1 MRKEEIPDKSRTIPIDPNLPKWVCQNCHHSLTIVGVDSYAGKFFNDPPPSATQGSSIHGA 60
Query: 61 NSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRG-SSAQSEASQSGKAMDESFVVIYKSES 118
NSVLGSTRMDNSFVVLP+ +P QS G+PPRPRG SS Q +A+QSGKAM+ESFVV+YKSE
Sbjct: 61 NSVLGSTRMDNSFVVLPRHKPPQSQGIPPRPRGASSPQPDATQSGKAMEESFVVVYKSEP 120
Query: 119 ASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLS 178
SD GG H E G NGP+ N SGF++TI VL RAF+IA +QTQVEQPLCLECMRVLS
Sbjct: 121 VSDSGGSHNLSLEVGQNGPLHSNTSGFNATINVLTRAFDIARTQTQVEQPLCLECMRVLS 180
Query: 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEK 238
DKL+KEV+DVTRD+EAYEAC+QRLEGE +DVLSEADFLKEK KIEEEERKL AAIEETEK
Sbjct: 181 DKLEKEVEDVTRDVEAYEACVQRLEGETQDVLSEADFLKEKKKIEEEERKLVAAIEETEK 240
Query: 239 QNAEVNAELKELELKSKRFKELEERYF 265
QNAEVN +LKELE K RF ELE+RY+
Sbjct: 241 QNAEVNHQLKELEFKGNRFNELEDRYW 267
>sp|Q6GP52|BECN1_XENLA Beclin-1 OS=Xenopus laevis GN=becn1 PE=2 SV=1
Length = 445
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 97/214 (45%), Gaps = 29/214 (13%)
Query: 68 RMDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHI 127
++D SF +L K Q P + + + ++E+F +E+ +DG +
Sbjct: 23 KLDTSFKILDKVTMQELTAPLVTTAAVKPGDIQEVDSNIEETF-----AENRTDGVSRRL 77
Query: 128 PPP----------------EGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCL 171
PP E G M+ + V F+I + QT V+ PLC
Sbjct: 78 IPPARMMSTESATSFTLIGEASDGGTME----NLSRRLKVTGDLFDIMSGQTDVDHPLCE 133
Query: 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLK-IEEEERKLE 230
EC L D+LD +++ + + Y+ CL+ LE D + + L+ KLK + E+E +L
Sbjct: 134 ECTDTLLDQLDTQLNITENECQNYKRCLEILERMNED---DKEKLEAKLKELAEDEERLI 190
Query: 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERY 264
+EE E+ V +++++ +++R ++ E RY
Sbjct: 191 QELEEVERNRELVAKDIEKVREEAERLEQEEARY 224
>sp|Q4A1L3|BECN1_XENTR Beclin-1 OS=Xenopus tropicalis GN=becn1 PE=2 SV=1
Length = 445
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 97/214 (45%), Gaps = 29/214 (13%)
Query: 68 RMDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHI 127
++D SF +L K Q P + + + ++E+F +E+ +DG +
Sbjct: 23 KLDTSFKILDKVTMQELTAPLVTTAAVKPGDIQEVDSNIEETF-----AENRTDGVSRRL 77
Query: 128 PPP----------------EGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCL 171
PP E G M+ + V F+I + QT V+ PLC
Sbjct: 78 IPPARMMSTESATSFTLIGEASDGGTME----NLSRRLKVTGDLFDIMSGQTDVDHPLCE 133
Query: 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLK-IEEEERKLE 230
EC L D+LD +++ + + Y+ CL+ LE D + + L+ KLK + E+E +L
Sbjct: 134 ECTDTLLDQLDTQLNITENECQNYKRCLEILERMNED---DKEKLEAKLKELAEDEDRLI 190
Query: 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERY 264
+EE E+ V +++++ +++R ++ E RY
Sbjct: 191 QELEEVERNRELVAKDIEKVREEAERLEQEEARY 224
>sp|Q54JI9|BECNB_DICDI Beclin-1-like protein B OS=Dictyostelium discoideum GN=atg6B PE=3
SV=1
Length = 855
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 156 FEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE-GEARDVLSEAD 214
F+IAT + PLCLEC ++ +L+ E + ++ Y A L++LE G+ + L E
Sbjct: 491 FKIATDLINYDLPLCLECTKLTIGELEDEGSILDGEVSIYSAYLKQLEKGKTEEDLEELG 550
Query: 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYF 265
KE + EEE +L IE T ++ EV +L+ + K LE+ Y+
Sbjct: 551 --KEMTLLCEEEEQLRLMIENTHQERKEVEQLTLQLQDRIATLKSLEDSYW 599
>sp|Q5ZKS6|BECN1_CHICK Beclin-1 OS=Gallus gallus GN=BECN1 PE=2 SV=1
Length = 447
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 25/152 (16%)
Query: 68 RMDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHI 127
++D SF +L + Q PP + +A + +E+F +E DG
Sbjct: 25 KLDTSFKILDRLTIQELTAPPLTAAPARPGDAQEESALSEEAF-----TEGRQDGVSRRF 79
Query: 128 PPP----------------EGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCL 171
PP E G M+ + V F+I + QT V+ PLC
Sbjct: 80 IPPARMMSTESANSFTLIGEASDGGTME----NLSRRLKVTGDLFDIMSGQTDVDHPLCE 135
Query: 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE 203
EC L D+LD +++ + + Y+ CL+ LE
Sbjct: 136 ECTDTLLDQLDTQLNITENECQNYKRCLEILE 167
>sp|Q02948|VPS30_YEAST Vacuolar protein sorting-associated protein 30 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS30 PE=1
SV=1
Length = 557
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%)
Query: 135 NGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEA 194
N +Q N+ + + + F I +SQT ++ P+C +C +L ++L E DD ++ +
Sbjct: 147 NQQIQLNSKTLSTQVNAMTNVFNILSSQTNIDFPICQDCCNILINRLKSEYDDAIKERDT 206
Query: 195 YEACLQRLEGEARDV 209
Y L +LE + +++
Sbjct: 207 YAQFLSKLESQNKEI 221
>sp|A8MW95|BECP1_HUMAN Putative beclin-1-like protein OS=Homo sapiens GN=BECN1P1 PE=5 SV=2
Length = 431
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 82 QSHGVPPRPRGSSAQSEASQS---GKAMDESFVVIYKSESASDGGGPHIPPPEGGTNG-- 136
+S +P P +S Q+E + G E + +E DG PP +G +
Sbjct: 22 ESRSLPAAPAPTSGQAEPGDTREPGVTTRE----VTDAEEQQDGASSRSPPGDGSVSKGH 77
Query: 137 ----PMQPNNSGFHSTITVLKRA---FEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVT 189
+ H ++ K A F+I + Q V+ PLC EC L ++LD ++
Sbjct: 78 ANIFTLLGELGAMHMLSSIQKAAGDIFDIVSGQAVVDHPLCEECTDSLLEQLDIQLALTE 137
Query: 190 RDIEAYEACLQRLEGEARDVLSEADFLKEKLK-IEEEERKLEAAIEETEKQNA 241
D + Y+ CL+ GE EA L+ +L+ +E EE +L +E+ ++ NA
Sbjct: 138 ADSQNYQRCLE--TGELATSEDEAAALRAELRDLELEEARLVQELEDVDRNNA 188
>sp|Q91XJ1|BECN1_RAT Beclin-1 OS=Rattus norvegicus GN=Becn1 PE=1 SV=1
Length = 448
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 32/156 (20%)
Query: 68 RMDNSFVVLPKQRPQSHGVP----PRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGG 123
++D SF +L + Q P + + +Q E + SG +E F+ E+ DG
Sbjct: 25 KLDTSFKILDRVTIQELTAPLLTTAQAKPGESQEEEANSG---EEPFI-----ETRQDGV 76
Query: 124 GPHIPPP----------------EGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQ 167
PP E G M+ + V F+I + QT V+
Sbjct: 77 SRRFIPPARMMSTESANSFTLIGEASDGGTME----NLSRRLKVTGDLFDIMSGQTDVDH 132
Query: 168 PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE 203
PLC EC L D+LD +++ + + Y+ CL+ LE
Sbjct: 133 PLCEECTDTLLDQLDTQLNVTENECQNYKRCLEMLE 168
>sp|O88597|BECN1_MOUSE Beclin-1 OS=Mus musculus GN=Becn1 PE=1 SV=3
Length = 448
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 32/156 (20%)
Query: 68 RMDNSFVVLPKQRPQSHGVP----PRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGG 123
++D SF +L + Q P + + Q E + SG +E F+ E+ DG
Sbjct: 25 KLDTSFKILDRVTIQELTAPLLTTAQAKPGETQEEEANSG---EEPFI-----ETRQDGV 76
Query: 124 GPHIPPP----------------EGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQ 167
PP E G M+ + V F+I + QT V+
Sbjct: 77 SRRFIPPARMMSTESANSFTLIGEASDGGTME----NLSRRLKVTGDLFDIMSGQTDVDH 132
Query: 168 PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE 203
PLC EC L D+LD +++ + + Y+ CL+ LE
Sbjct: 133 PLCEECTDTLLDQLDTQLNVTENECQNYKRCLEILE 168
>sp|P87117|YDKA_SCHPO Vacuolar protein sorting-associated protein atg6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=atg6 PE=3 SV=4
Length = 464
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 35/145 (24%)
Query: 115 KSESASDGGGPHIPPPEGGT--------------------NGPMQPNNSGFHSTITVLKR 154
K+ S D ++PPPE T N P + N+ F I + R
Sbjct: 69 KTISEGDYNFDNVPPPELRTPTLDSFVVLPAAKDGYEEEKNSPEEVNDL-FSWKIEIYNR 127
Query: 155 AFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEAD 214
F++ +S+T+V+ PLC+EC +L++++ K L+ L+ E + + +
Sbjct: 128 IFDLLSSKTKVDHPLCVECAELLTEEMSK--------------TLRALKEEKKMYFNYDN 173
Query: 215 FLKEKLKIEEEERKLEAAIEETEKQ 239
FL + EE L++ I+E KQ
Sbjct: 174 FLSSQTVHEENTAALDSEIDELMKQ 198
>sp|Q4A1L4|BECN1_BOVIN Beclin-1 OS=Bos taurus GN=BECN1 PE=2 SV=1
Length = 448
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 32/156 (20%)
Query: 68 RMDNSFVVLPKQRPQSHGVP----PRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGG 123
++D SF +L + Q P + + Q E + SG +E F+ E+ DG
Sbjct: 25 KLDTSFKILDRVTIQELTAPLLATAQLKPGETQEEEANSG---EEPFI-----ETRQDGV 76
Query: 124 GPHIPPP----------------EGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQ 167
PP E G M+ + V F+I + QT V+
Sbjct: 77 SRRFIPPARMMSTESANSFTLIGEASDGGTME----NLSRRLKVTGDLFDIMSGQTDVDH 132
Query: 168 PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE 203
PLC EC L D+LD +++ + + Y+ CL+ LE
Sbjct: 133 PLCEECTDTLLDQLDTQLNVTENECQNYKRCLEILE 168
>sp|Q4A1L5|BECN1_PIG Beclin-1 OS=Sus scrofa GN=BECN1 PE=2 SV=1
Length = 448
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 101/243 (41%), Gaps = 46/243 (18%)
Query: 47 SSRSTMHGSSIHASNSVLGSTRMDNSFVVLPKQRPQSHGVP----PRPRGSSAQSEASQS 102
+S STM S + S ++D SF +L + Q P + + Q E +
Sbjct: 6 TSSSTMQVSFVCQRCS--QPLKLDTSFKILDRVTIQELTAPLLATAQVKPGETQEEEANP 63
Query: 103 GKAMDESFVVIYKSESASDGGGPHIPPP----------------EGGTNGPMQPNNSGFH 146
G +E F+ E+ DG PP E G M+
Sbjct: 64 G---EEPFI-----ETRQDGVSRRFIPPARMMSTESANSFTLIGEASDGGTME----NLS 111
Query: 147 STITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA 206
+ V F+I + QT V+ PLC EC L D+LD +++ + + Y+ CL+ LE
Sbjct: 112 RRLKVTGDLFDIMSGQTDVDHPLCEECTDTLLDQLDTQLNVTENECQNYKRCLEILEQ-- 169
Query: 207 RDVLSEADFLKEKLKIEEEERKLEAA-----IEETEKQNAEVNAELKELELKSKRFKELE 261
+ E D E+L++E E LE +EE EK V L++++ +++R + E
Sbjct: 170 ---MHEDD--SEQLRMELRELALEEERLIQELEEVEKNRKIVAENLEKVQAEAERLDQEE 224
Query: 262 ERY 264
+Y
Sbjct: 225 AQY 227
>sp|Q5R878|BECN1_PONAB Beclin-1 OS=Pongo abelii GN=BECN1 PE=2 SV=1
Length = 450
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 29/155 (18%)
Query: 68 RMDNSFVVLPKQRPQSHGVP----PRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGG 123
++D SF +L + Q P + + Q E + SG +E F+ + + S
Sbjct: 26 KLDTSFKILDRVTIQELTAPLLTTAQAKPGETQEEETNSG---EEPFIETPRQDGVSR-- 80
Query: 124 GPHIPPP---------------EGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQP 168
IPP E G M+ + V F+I + QT V+ P
Sbjct: 81 -RFIPPARMMSTESANSFTLIGEASDGGTME----NLSRRLKVTGDLFDIMSGQTDVDHP 135
Query: 169 LCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE 203
LC EC L D+LD +++ + + Y+ CL+ LE
Sbjct: 136 LCEECTDTLLDQLDTQLNVTENECQNYKRCLEILE 170
>sp|Q14457|BECN1_HUMAN Beclin-1 OS=Homo sapiens GN=BECN1 PE=1 SV=2
Length = 450
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 29/155 (18%)
Query: 68 RMDNSFVVLPKQRPQSHGVP----PRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGG 123
++D SF +L + Q P + + Q E + SG +E F+ + + S
Sbjct: 26 KLDTSFKILDRVTIQELTAPLLTTAQAKPGETQEEETNSG---EEPFIETPRQDGVSR-- 80
Query: 124 GPHIPPP---------------EGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQP 168
IPP E G M+ + V F+I + QT V+ P
Sbjct: 81 -RFIPPARMMSTESANSFTLIGEASDGGTME----NLSRRLKVTGDLFDIMSGQTDVDHP 135
Query: 169 LCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE 203
LC EC L D+LD +++ + + Y+ CL+ LE
Sbjct: 136 LCEECTDTLLDQLDTQLNVTENECQNYKRCLEILE 170
>sp|A5DIV5|BECN1_PICGU Autophagy-related protein 6 OS=Meyerozyma guilliermondii (strain
ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 /
NRRL Y-324) GN=ATG6 PE=2 SV=2
Length = 461
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 22/136 (16%)
Query: 128 PPPEGG-TNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVD 186
P PE +GP P + H+ L++ F+I +++ +V P+C EC +L + + D
Sbjct: 109 PSPESSEADGP-NPISGRIHT----LEKIFDILSNKGEVNHPMCDECAELLIENYKLKFD 163
Query: 187 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLK--IEE-------------EERKLEA 231
R+ ++Y L++L+ + + E+D L KL+ I+E E R LE
Sbjct: 164 QNQREKDSYMTFLKKLKLKDDSDIKESD-LDTKLRDSIQECRDLAASEQEKLQELRSLEQ 222
Query: 232 AIEETEKQNAEVNAEL 247
EE K+ +V EL
Sbjct: 223 NREELSKELQDVKMEL 238
>sp|A2ABV5|MED14_MOUSE Mediator of RNA polymerase II transcription subunit 14 OS=Mus
musculus GN=Med14 PE=1 SV=1
Length = 1459
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 46 DSSRSTMHGSS---IHASNSVLGSTRMDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQS 102
+ S S MH S +HA++S G+ R + +P P SHG+ P S A +
Sbjct: 1038 NQSPSMMHTQSPGNLHAASSPSGALRAPSPASFVPTPPPSSHGISIGPGASFASPHGT-- 1095
Query: 103 GKAMDESFVVIYKSESASDG---GGPHIPPPEGGTNGP-MQPNNSGFHSTI 149
+D S S S G G P + P T P M P N HS +
Sbjct: 1096 ---LDPSSPYTMVSPSGRAGNWPGSPQVSGPSPATRLPGMSPANPSLHSPV 1143
>sp|Q8IDG7|YPF01_PLAF7 Uncharacterized protein PF13_0277 OS=Plasmodium falciparum (isolate
3D7) GN=PF13_0277 PE=4 SV=1
Length = 2068
Score = 35.4 bits (80), Expect = 0.46, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEK 238
+ D +DDV RD+E Y+ + ++ DV + D + K+EE +E + E+
Sbjct: 1035 ENYDNYIDDVDRDVENYDKGIANVDHHLNDVHKDLD---DHKKVEEVIADIEKEDKNVER 1091
Query: 239 QNAEVNAELKELELKSKRFKELEERYFFNI 268
+N + + E + + K+L+ NI
Sbjct: 1092 KNVNLKGAQNKTEYQQELVKKLDTDQNINI 1121
>sp|Q5RDM4|HSP74_PONAB Heat shock 70 kDa protein 4 OS=Pongo abelii GN=HSPA4 PE=2 SV=1
Length = 840
Score = 34.7 bits (78), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 176 VLSDKLDKEVDDVTRDIEAYEACLQ-RLEGEARDVLSEADFLKEKLKIEEEERKLEAAIE 234
++ DKL+KE +D +E Y ++ +L GE +SE D LK+E+ E L E
Sbjct: 605 IMQDKLEKERNDAKNAVEEYVYEMRDKLSGEYEKFVSEDDRNSFTLKLEDTENWLYEDGE 664
Query: 235 ETEKQ-NAEVNAELKELELKSK-RFKELEER 263
+ KQ + AELK L K RF+E EER
Sbjct: 665 DQPKQVYVDKLAELKNLGQPIKIRFQESEER 695
>sp|P34932|HSP74_HUMAN Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4
Length = 840
Score = 34.7 bits (78), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 176 VLSDKLDKEVDDVTRDIEAYEACLQ-RLEGEARDVLSEADFLKEKLKIEEEERKLEAAIE 234
++ DKL+KE +D +E Y ++ +L GE +SE D LK+E+ E L E
Sbjct: 605 IMQDKLEKERNDAKNAVEEYVYEMRDKLSGEYEKFVSEDDRNSFTLKLEDTENWLYEDGE 664
Query: 235 ETEKQ-NAEVNAELKELELKSK-RFKELEER 263
+ KQ + AELK L K RF+E EER
Sbjct: 665 DQPKQVYVDKLAELKNLGQPIKIRFQESEER 695
>sp|Q61316|HSP74_MOUSE Heat shock 70 kDa protein 4 OS=Mus musculus GN=Hspa4 PE=1 SV=1
Length = 841
Score = 34.7 bits (78), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 176 VLSDKLDKEVDDVTRDIEAYEACLQ-RLEGEARDVLSEADFLKEKLKIEEEERKLEAAIE 234
++ DKL+KE +D +E Y ++ +L GE +SE D LK+E+ E L E
Sbjct: 606 IMQDKLEKERNDAKNAVEEYVYEMRDKLSGEYEKFVSEDDRNTFTLKLEDTENWLYEDGE 665
Query: 235 ETEKQ-NAEVNAELKELELKSK-RFKELEER 263
+ KQ + AELK L K RF+E EER
Sbjct: 666 DQPKQVYVDKLAELKSLGQPIKTRFQESEER 696
>sp|Q4I877|NDE1_GIBZE Nuclear distribution protein nudE homolog 1 OS=Gibberella zeae
(strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
GN=NDE1 PE=3 SV=1
Length = 583
Score = 34.7 bits (78), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 157 EIATSQTQVEQPLCL--ECMRVLSDKL-DKEV--DDVTRDIEAYEACLQRLEGEARDVLS 211
E + SQ +E+ + + R L KL D EV DD R + L+ +E + +
Sbjct: 86 EASASQNALEKEITTLRDTNRTLQLKLRDIEVANDDFERQARNTTSSLEDMESKYNQAIE 145
Query: 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFFNI 268
A ++E++KI E+ER E E+++ E+ E EL +FK+ E R+ I
Sbjct: 146 RAVMMEEEIKIGEQER--EQLRIESQRLREELGDLKIEAELLQDKFKKQESRHLSTI 200
>sp|Q9VCE1|BECN1_DROME Beclin-1-like protein OS=Drosophila melanogaster GN=Atg6 PE=2 SV=1
Length = 422
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 141 NNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200
+N + + F+ +S ++++ PLC EC + + +D+E+ + + Y+A L
Sbjct: 83 DNKKMSAAFKLKAELFDCLSSNSEIDHPLCEECADSMLEIMDRELRIAEDEWDVYKAYLD 142
Query: 201 RLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 244
LE + EA KE +++ E++L + ++E +K+ +N
Sbjct: 143 ELEQQRVAPNVEA-LDKELDELKRSEQQLLSELKELKKEEQSLN 185
>sp|O88600|HSP74_RAT Heat shock 70 kDa protein 4 OS=Rattus norvegicus GN=Hspa4 PE=1 SV=1
Length = 840
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 176 VLSDKLDKEVDDVTRDIEAYEACLQ-RLEGEARDVLSEADFLKEKLKIEEEERKLEAAIE 234
++ DKL+KE +D +E Y ++ +L GE +SE D LK+E+ E L E
Sbjct: 605 IMQDKLEKERNDAKNAVEEYVYEMRDKLSGEYEKFVSEDDRNNFTLKLEDTENWLYEDGE 664
Query: 235 ETEKQ-NAEVNAELKELELKSK-RFKELEER 263
+ KQ + AEL+ L K RF+E EER
Sbjct: 665 DQPKQVYVDKLAELRTLGQPIKTRFQESEER 695
>sp|Q2TFN9|HSP74_CANFA Heat shock 70 kDa protein 4 OS=Canis familiaris GN=HSPA4 PE=1 SV=1
Length = 840
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 176 VLSDKLDKEVDDVTRDIEAYEACLQ-RLEGEARDVLSEADFLKEKLKIEEEERKLEAAIE 234
++ DKL KE +D +E Y ++ +L GE +SE D LK+E+ E L E
Sbjct: 605 IMQDKLKKERNDAKNAVEEYVYEMRDKLSGEYEKFVSEDDRNSFTLKLEDTENWLYEDGE 664
Query: 235 ETEKQ-NAEVNAELKELELKSK-RFKELEER 263
+ KQ + AELK L K RF+E EER
Sbjct: 665 DQPKQVYVDKLAELKNLGQPIKMRFQESEER 695
>sp|Q8CGB3|UACA_MOUSE Uveal autoantigen with coiled-coil domains and ankyrin repeats OS=Mus
musculus GN=Uaca PE=1 SV=2
Length = 1411
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 67/132 (50%), Gaps = 16/132 (12%)
Query: 153 KRAFEIATSQTQVE-QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQR---------- 201
K+A EI +Q ++ QP+ LE + L L+ ++ + ++ + + CL+R
Sbjct: 1097 KQASEILAAQNLLQKQPVPLEQVEALKKSLNGTIEQLKEELRSKQRCLEREQQTVSQLQQ 1156
Query: 202 -LEGEARDVLSEADFLKEKLKIEEEERKLEAAI----EETEKQNAEVNAELKELELKSKR 256
LE + ++ A+ LK K +E+E ++A++ EE++K+ EV+ E++ +
Sbjct: 1157 LLENQKNSSVTLAEHLKLKEALEKEVGIMKASLREKEEESQKKTKEVSKLQTEVQTTKQA 1216
Query: 257 FKELEERYFFNI 268
K LE R ++
Sbjct: 1217 LKNLETREVVDM 1228
>sp|P22312|PU92_SCICO Puff II/9-2 protein OS=Sciara coprophila GN=II/9-2 PE=2 SV=1
Length = 286
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 28/140 (20%)
Query: 139 QPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSD------KLDKEVDDVTRDI 192
Q N TI LK+ E+A +Q +E+ C + L+D KL +++++ I
Sbjct: 107 QKNTENLKETIEQLKK--ELAEAQKALEK-----CKKELADCKKENAKLLNKIEELNCTI 159
Query: 193 EAYEACLQRLEGEARDVLSEADFLKEKLKI-----------EEEER----KLEAAIEETE 237
+ L+R G RD+ + D K+KL I +EE R +L IE+
Sbjct: 160 TQLQEKLERCRGRERDLQCQLDECKKKLNICNNELIACRKQQEELRCKIERLNTEIEKLR 219
Query: 238 KQNAEVNAELKELELKSKRF 257
KQNA +L L ++ F
Sbjct: 220 KQNAACEKDLNTLRCETSEF 239
>sp|Q5XK92|CIP2A_XENLA Protein CIP2A homolog OS=Xenopus laevis PE=2 SV=1
Length = 906
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 202 LEGEARDVLSEADFLK-----EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256
LE +A LS+AD L ++ + E E RKL A +++TE++N E++ LK +++S+R
Sbjct: 645 LEAKAL-ALSQADRLIAQYRCQRAQAEAEARKLAALLKDTERRNEELSLLLKSQQIESER 703
Query: 257 FKELEERYF 265
K E+ F
Sbjct: 704 AKSDIEQLF 712
>sp|Q5VT25|MRCKA_HUMAN Serine/threonine-protein kinase MRCK alpha OS=Homo sapiens
GN=CDC42BPA PE=1 SV=1
Length = 1732
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 157 EIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFL 216
EI + QV + LE ++ + +E+DD R I+AYE ++ L+ E D+ E
Sbjct: 495 EIEKLRKQVTESSHLEQQLEEANAVRQELDDAFRQIKAYEKQIKTLQQEREDLNKELVQA 554
Query: 217 KEKLKIEEEERKLEAAIEETEKQN-AEVNAELKELELKSKRF 257
E+LK + +E K + Q E+N L EL + ++
Sbjct: 555 SERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQKQKL 596
>sp|Q7T005|RFIP3_DANRE Rab11 family-interacting protein 3 OS=Danio rerio GN=rab11fip3 PE=3
SV=1
Length = 1183
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 159 ATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKE 218
A ++ Q E+ L +E ++ +LD+E ++ + A ++RLE E R + EAD + +
Sbjct: 956 ALNKLQRERDLEIENLQARLHQLDEENSELRSCVPCLRANIERLEEEKRKLQDEADDITQ 1015
Query: 219 KLKIEEEERK 228
+L E E R+
Sbjct: 1016 RLNEESESRR 1025
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,784,864
Number of Sequences: 539616
Number of extensions: 4460353
Number of successful extensions: 27967
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 922
Number of HSP's that attempted gapping in prelim test: 24431
Number of HSP's gapped (non-prelim): 4152
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)