Query 024294
Match_columns 269
No_of_seqs 137 out of 197
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2751 Beclin-like protein [S 100.0 7.8E-37 1.7E-41 293.5 20.1 234 33-269 1-235 (447)
2 PF04111 APG6: Autophagy prote 99.8 1.2E-18 2.6E-23 163.7 8.3 101 168-268 1-101 (314)
3 KOG2751 Beclin-like protein [S 97.2 0.002 4.4E-08 63.6 9.8 122 142-263 74-215 (447)
4 TIGR02894 DNA_bind_RsfA transc 96.1 0.14 3E-06 45.0 12.0 80 176-258 54-145 (161)
5 PRK11637 AmiB activator; Provi 95.4 0.23 5E-06 48.5 12.3 85 179-263 43-128 (428)
6 PRK10884 SH3 domain-containing 95.0 0.67 1.4E-05 41.9 12.8 81 176-265 93-173 (206)
7 COG4026 Uncharacterized protei 94.7 0.51 1.1E-05 43.9 11.3 106 150-264 73-189 (290)
8 PF15285 BH3: Beclin-1 BH3 dom 94.6 0.012 2.5E-07 36.6 0.4 20 143-162 6-25 (25)
9 PRK11637 AmiB activator; Provi 94.1 0.85 1.8E-05 44.6 12.3 83 175-257 46-129 (428)
10 COG4942 Membrane-bound metallo 93.9 0.97 2.1E-05 45.1 12.2 96 152-261 15-110 (420)
11 PF05700 BCAS2: Breast carcino 93.5 0.8 1.7E-05 41.3 10.1 110 143-262 111-220 (221)
12 PF04111 APG6: Autophagy prote 93.4 0.91 2E-05 43.3 11.0 44 212-255 59-102 (314)
13 PF10146 zf-C4H2: Zinc finger- 93.0 2 4.2E-05 39.6 12.0 74 174-253 30-103 (230)
14 PF04156 IncA: IncA protein; 92.9 4.1 8.8E-05 35.2 13.3 31 174-204 86-116 (191)
15 PF08317 Spc7: Spc7 kinetochor 92.9 1.8 4E-05 41.1 12.1 84 175-258 148-257 (325)
16 COG1579 Zn-ribbon protein, pos 92.3 1.6 3.5E-05 40.5 10.5 29 177-205 11-39 (239)
17 PF10146 zf-C4H2: Zinc finger- 91.9 2.8 6E-05 38.6 11.5 46 214-259 36-81 (230)
18 COG1579 Zn-ribbon protein, pos 91.3 4.2 9.2E-05 37.8 12.1 80 178-257 54-136 (239)
19 PF12325 TMF_TATA_bd: TATA ele 91.3 3.1 6.6E-05 34.8 10.2 32 175-206 15-46 (120)
20 PF07106 TBPIP: Tat binding pr 90.9 3 6.6E-05 35.7 10.2 70 170-239 66-138 (169)
21 PHA02562 46 endonuclease subun 90.1 2.1 4.5E-05 42.6 9.7 12 166-177 283-294 (562)
22 PF10186 Atg14: UV radiation r 89.5 13 0.00028 33.6 13.5 37 166-202 10-46 (302)
23 PF15035 Rootletin: Ciliary ro 89.3 11 0.00024 33.5 12.6 92 175-266 15-127 (182)
24 TIGR02231 conserved hypothetic 89.0 5.8 0.00013 39.8 12.0 82 178-259 80-173 (525)
25 PF05278 PEARLI-4: Arabidopsis 88.9 6.6 0.00014 37.2 11.4 39 145-183 95-140 (269)
26 KOG2129 Uncharacterized conser 88.8 4.6 0.0001 40.7 10.7 80 180-268 250-333 (552)
27 PHA02562 46 endonuclease subun 88.6 4.7 0.0001 40.0 10.9 85 178-264 183-274 (562)
28 KOG0250 DNA repair protein RAD 88.2 8.6 0.00019 42.5 13.1 50 217-266 379-429 (1074)
29 PRK03918 chromosome segregatio 88.0 6.1 0.00013 41.6 11.8 16 177-192 170-185 (880)
30 PF09789 DUF2353: Uncharacteri 87.9 7.7 0.00017 37.5 11.4 87 174-260 84-176 (319)
31 COG4026 Uncharacterized protei 87.8 3 6.5E-05 38.9 8.2 45 213-257 152-196 (290)
32 PF03962 Mnd1: Mnd1 family; I 87.4 11 0.00024 33.4 11.5 23 180-202 66-88 (188)
33 PRK04863 mukB cell division pr 87.2 6.9 0.00015 44.8 12.2 27 177-203 315-341 (1486)
34 smart00787 Spc7 Spc7 kinetocho 86.9 12 0.00025 35.9 12.0 85 174-258 142-252 (312)
35 PF08826 DMPK_coil: DMPK coile 86.8 5.7 0.00012 29.6 7.8 45 214-258 15-59 (61)
36 PRK10884 SH3 domain-containing 86.5 16 0.00034 33.1 12.0 68 178-254 102-169 (206)
37 PF04012 PspA_IM30: PspA/IM30 86.3 22 0.00049 31.4 12.9 109 152-262 3-136 (221)
38 PF04156 IncA: IncA protein; 86.2 19 0.00042 31.0 12.1 27 178-204 83-109 (191)
39 TIGR02473 flagell_FliJ flagell 85.9 17 0.00037 29.4 12.3 41 222-262 73-113 (141)
40 PF10473 CENP-F_leu_zip: Leuci 85.8 16 0.00035 31.4 11.1 48 213-260 55-102 (140)
41 PF11414 Suppressor_APC: Adeno 85.3 3.2 6.9E-05 32.7 6.1 53 216-268 6-60 (84)
42 PF12325 TMF_TATA_bd: TATA ele 85.2 7.5 0.00016 32.5 8.6 45 213-257 19-63 (120)
43 PRK03918 chromosome segregatio 84.9 11 0.00024 39.7 11.7 23 179-201 165-187 (880)
44 PF03961 DUF342: Protein of un 84.3 11 0.00024 37.2 10.9 78 173-250 331-408 (451)
45 PF14197 Cep57_CLD_2: Centroso 83.3 15 0.00033 27.8 8.8 32 175-206 4-35 (69)
46 PRK09039 hypothetical protein; 82.6 23 0.00049 34.2 12.0 84 174-257 79-184 (343)
47 KOG3119 Basic region leucine z 82.4 9.2 0.0002 35.8 8.9 54 214-267 205-258 (269)
48 PF11932 DUF3450: Protein of u 82.2 29 0.00063 31.6 12.0 44 215-258 54-97 (251)
49 COG1730 GIM5 Predicted prefold 82.2 32 0.0007 29.7 12.0 87 175-261 19-138 (145)
50 TIGR02169 SMC_prok_A chromosom 81.8 22 0.00048 38.1 12.7 13 180-192 354-366 (1164)
51 PRK03947 prefoldin subunit alp 81.5 29 0.00062 28.7 10.8 86 176-261 20-138 (140)
52 TIGR02169 SMC_prok_A chromosom 81.2 24 0.00052 37.9 12.6 20 178-197 260-279 (1164)
53 TIGR02894 DNA_bind_RsfA transc 81.1 24 0.00052 31.2 10.4 58 211-268 81-141 (161)
54 COG1196 Smc Chromosome segrega 81.1 21 0.00045 39.7 12.4 41 219-259 865-905 (1163)
55 PF14662 CCDC155: Coiled-coil 81.0 42 0.00092 30.4 12.2 49 212-260 69-117 (193)
56 PRK01156 chromosome segregatio 80.9 11 0.00023 40.2 9.9 19 167-185 452-470 (895)
57 TIGR03319 YmdA_YtgF conserved 80.9 28 0.0006 35.6 12.4 43 222-264 85-127 (514)
58 PF12718 Tropomyosin_1: Tropom 80.9 34 0.00073 29.1 11.5 84 176-259 35-122 (143)
59 PRK12704 phosphodiesterase; Pr 80.8 27 0.00058 35.8 12.3 16 229-244 98-113 (520)
60 COG5185 HEC1 Protein involved 80.6 27 0.00059 36.0 11.9 71 192-265 238-315 (622)
61 PF08317 Spc7: Spc7 kinetochor 80.5 41 0.00089 32.0 12.8 37 215-251 228-264 (325)
62 TIGR01069 mutS2 MutS2 family p 80.5 8.1 0.00018 41.2 8.8 20 21-40 295-318 (771)
63 COG4942 Membrane-bound metallo 80.3 30 0.00065 34.8 12.1 74 175-254 37-110 (420)
64 TIGR02168 SMC_prok_B chromosom 79.9 32 0.0007 36.6 13.0 20 179-198 189-208 (1179)
65 PF15070 GOLGA2L5: Putative go 79.3 18 0.00038 38.0 10.6 30 224-253 80-109 (617)
66 PF11932 DUF3450: Protein of u 79.2 36 0.00078 31.0 11.5 34 218-251 64-97 (251)
67 PRK00409 recombination and DNA 79.1 9.8 0.00021 40.7 8.9 52 215-266 518-569 (782)
68 PRK05689 fliJ flagellar biosyn 79.0 36 0.00077 28.2 12.3 46 221-266 75-120 (147)
69 TIGR03185 DNA_S_dndD DNA sulfu 78.9 39 0.00084 35.0 12.9 46 214-259 425-470 (650)
70 PF05529 Bap31: B-cell recepto 78.6 35 0.00076 29.7 10.8 36 224-259 154-189 (192)
71 PF10473 CENP-F_leu_zip: Leuci 78.4 43 0.00092 28.8 11.1 21 183-203 10-30 (140)
72 KOG0804 Cytoplasmic Zn-finger 78.0 26 0.00056 35.7 10.8 7 67-73 183-189 (493)
73 COG1196 Smc Chromosome segrega 77.9 24 0.00052 39.2 11.7 24 243-266 444-467 (1163)
74 PRK02224 chromosome segregatio 77.9 30 0.00065 36.6 12.0 51 213-263 649-699 (880)
75 COG1382 GimC Prefoldin, chaper 77.9 41 0.00089 28.3 10.6 79 179-257 16-110 (119)
76 PF05266 DUF724: Protein of un 77.7 34 0.00074 30.6 10.6 25 236-260 150-174 (190)
77 KOG2391 Vacuolar sorting prote 77.3 79 0.0017 31.2 15.5 27 214-240 243-269 (365)
78 PF10234 Cluap1: Clusterin-ass 76.9 33 0.00071 32.5 10.7 46 212-257 192-237 (267)
79 PF11365 DUF3166: Protein of u 76.6 14 0.0003 30.0 7.1 44 211-254 2-45 (96)
80 PF10498 IFT57: Intra-flagella 76.5 33 0.00072 33.6 11.0 15 19-33 48-62 (359)
81 KOG0995 Centromere-associated 76.5 26 0.00057 36.5 10.7 30 176-205 259-288 (581)
82 PRK13729 conjugal transfer pil 76.4 10 0.00023 38.5 7.7 39 215-253 81-119 (475)
83 PF01920 Prefoldin_2: Prefoldi 76.4 33 0.00071 26.4 11.0 75 178-255 14-100 (106)
84 PF14257 DUF4349: Domain of un 76.2 13 0.00028 33.9 7.7 27 173-200 130-156 (262)
85 PF08614 ATG16: Autophagy prot 76.1 31 0.00067 30.3 9.9 45 218-262 131-175 (194)
86 PF10037 MRP-S27: Mitochondria 76.0 50 0.0011 33.2 12.3 24 243-266 370-393 (429)
87 PF05529 Bap31: B-cell recepto 75.9 35 0.00075 29.7 10.1 37 217-253 154-190 (192)
88 PF07888 CALCOCO1: Calcium bin 75.8 50 0.0011 34.3 12.5 19 99-117 79-97 (546)
89 TIGR02680 conserved hypothetic 75.5 40 0.00086 38.3 12.7 10 150-159 180-189 (1353)
90 KOG0995 Centromere-associated 75.3 32 0.00069 35.9 10.9 12 176-187 221-232 (581)
91 PF05266 DUF724: Protein of un 75.0 38 0.00083 30.3 10.2 8 163-170 86-93 (190)
92 TIGR02338 gimC_beta prefoldin, 74.9 42 0.00091 26.9 10.8 80 178-257 19-107 (110)
93 KOG1853 LIS1-interacting prote 74.9 49 0.0011 31.7 11.1 80 177-260 92-179 (333)
94 PRK01156 chromosome segregatio 74.5 61 0.0013 34.6 13.2 20 170-189 167-186 (895)
95 PF02050 FliJ: Flagellar FliJ 74.4 36 0.00077 25.9 12.0 41 219-259 54-94 (123)
96 PRK00409 recombination and DNA 73.5 15 0.00033 39.2 8.5 21 20-40 299-323 (782)
97 PF04849 HAP1_N: HAP1 N-termin 73.2 57 0.0012 31.5 11.5 62 144-206 115-190 (306)
98 PF02996 Prefoldin: Prefoldin 73.2 26 0.00057 27.7 8.0 81 178-258 5-118 (120)
99 cd00632 Prefoldin_beta Prefold 73.2 45 0.00097 26.4 11.0 39 219-257 65-103 (105)
100 PF09726 Macoilin: Transmembra 72.7 43 0.00093 35.6 11.5 60 175-234 417-477 (697)
101 PF09726 Macoilin: Transmembra 72.5 51 0.0011 35.1 12.0 28 232-259 546-573 (697)
102 PRK09841 cryptic autophosphory 72.5 55 0.0012 34.5 12.2 35 171-205 262-296 (726)
103 KOG0163 Myosin class VI heavy 72.4 28 0.0006 38.0 9.8 12 193-204 903-914 (1259)
104 PRK09039 hypothetical protein; 72.3 66 0.0014 31.1 11.8 27 178-204 76-102 (343)
105 KOG0972 Huntingtin interacting 72.2 36 0.00078 33.2 9.8 42 215-256 257-298 (384)
106 PF14932 HAUS-augmin3: HAUS au 72.0 76 0.0016 29.3 11.8 80 174-259 66-149 (256)
107 PRK13729 conjugal transfer pil 71.9 12 0.00025 38.2 6.8 27 222-248 95-121 (475)
108 PF07106 TBPIP: Tat binding pr 71.4 20 0.00043 30.7 7.3 26 153-180 20-45 (169)
109 cd07666 BAR_SNX7 The Bin/Amphi 71.3 86 0.0019 29.2 11.9 58 144-201 86-153 (243)
110 PF07888 CALCOCO1: Calcium bin 71.3 69 0.0015 33.3 12.2 28 216-243 205-232 (546)
111 KOG0999 Microtubule-associated 71.2 66 0.0014 33.9 11.9 52 217-268 107-172 (772)
112 KOG1962 B-cell receptor-associ 71.0 53 0.0011 30.3 10.2 48 213-260 154-201 (216)
113 PF00038 Filament: Intermediat 70.8 88 0.0019 28.9 12.6 42 217-258 96-137 (312)
114 TIGR03185 DNA_S_dndD DNA sulfu 70.7 62 0.0013 33.6 12.0 11 185-195 184-194 (650)
115 PF13747 DUF4164: Domain of un 70.7 26 0.00056 27.7 7.2 38 213-250 35-72 (89)
116 PRK00888 ftsB cell division pr 70.7 16 0.00036 29.5 6.3 34 219-252 29-62 (105)
117 smart00787 Spc7 Spc7 kinetocho 70.5 64 0.0014 31.0 11.2 26 144-169 74-99 (312)
118 PF09755 DUF2046: Uncharacteri 70.4 38 0.00081 32.8 9.5 66 177-247 107-172 (310)
119 PRK09343 prefoldin subunit bet 69.9 61 0.0013 26.7 11.1 40 219-258 73-112 (121)
120 PF11559 ADIP: Afadin- and alp 69.2 67 0.0014 26.9 11.6 90 147-251 32-121 (151)
121 COG2433 Uncharacterized conser 69.1 51 0.0011 34.8 10.7 10 29-38 242-251 (652)
122 PF14257 DUF4349: Domain of un 68.7 26 0.00057 31.9 7.9 31 229-259 160-190 (262)
123 PRK07720 fliJ flagellar biosyn 68.5 67 0.0015 26.6 13.0 18 182-199 36-53 (146)
124 cd00890 Prefoldin Prefoldin is 68.2 59 0.0013 25.8 10.2 42 216-257 86-127 (129)
125 cd07653 F-BAR_CIP4-like The F- 68.1 71 0.0015 28.6 10.5 60 144-203 69-143 (251)
126 COG3883 Uncharacterized protei 68.0 63 0.0014 30.7 10.3 68 178-251 33-100 (265)
127 KOG0977 Nuclear envelope prote 67.9 72 0.0016 33.2 11.5 24 179-202 109-132 (546)
128 PRK00106 hypothetical protein; 67.8 1.1E+02 0.0024 31.7 12.8 38 222-259 106-143 (535)
129 TIGR03752 conj_TIGR03752 integ 67.7 58 0.0013 33.3 10.6 71 178-254 68-139 (472)
130 KOG0977 Nuclear envelope prote 67.7 82 0.0018 32.8 11.9 28 218-245 163-190 (546)
131 PRK11519 tyrosine kinase; Prov 67.6 1.1E+02 0.0025 32.1 13.3 32 173-204 264-295 (719)
132 KOG0161 Myosin class II heavy 67.4 55 0.0012 38.9 11.6 54 215-268 1102-1162(1930)
133 PF13805 Pil1: Eisosome compon 67.2 88 0.0019 29.8 11.2 28 177-204 108-135 (271)
134 COG4985 ABC-type phosphate tra 67.0 94 0.002 29.4 11.1 81 174-263 159-246 (289)
135 PRK04863 mukB cell division pr 66.7 74 0.0016 36.8 12.4 50 210-259 435-484 (1486)
136 PF07200 Mod_r: Modifier of ru 66.6 74 0.0016 26.4 10.1 14 187-200 11-24 (150)
137 TIGR00606 rad50 rad50. This fa 66.6 1E+02 0.0022 34.9 13.3 54 211-264 299-359 (1311)
138 COG4372 Uncharacterized protei 66.5 88 0.0019 31.7 11.4 42 217-258 137-178 (499)
139 PRK04778 septation ring format 66.3 55 0.0012 33.5 10.4 56 144-202 253-312 (569)
140 PF13851 GAS: Growth-arrest sp 66.3 99 0.0021 27.7 12.0 28 177-204 28-55 (201)
141 TIGR03319 YmdA_YtgF conserved 66.1 91 0.002 31.9 11.9 36 226-261 82-117 (514)
142 KOG4196 bZIP transcription fac 65.9 28 0.0006 29.9 6.8 41 218-258 75-115 (135)
143 PF12018 DUF3508: Domain of un 65.8 1.2E+02 0.0026 28.4 12.6 84 175-258 8-93 (281)
144 PF00769 ERM: Ezrin/radixin/mo 65.5 55 0.0012 30.2 9.4 37 222-258 59-95 (246)
145 PF08172 CASP_C: CASP C termin 65.5 26 0.00057 32.6 7.3 6 263-268 131-136 (248)
146 COG2433 Uncharacterized conser 65.4 1E+02 0.0022 32.7 12.0 7 14-20 248-254 (652)
147 PRK12704 phosphodiesterase; Pr 65.0 1.1E+02 0.0024 31.3 12.3 22 228-249 90-111 (520)
148 TIGR02231 conserved hypothetic 64.7 65 0.0014 32.4 10.5 28 177-204 72-99 (525)
149 PF10224 DUF2205: Predicted co 64.3 37 0.00081 26.6 6.8 41 227-268 19-59 (80)
150 TIGR01000 bacteriocin_acc bact 64.2 1.5E+02 0.0032 29.4 12.7 28 178-205 174-201 (457)
151 PF13851 GAS: Growth-arrest sp 64.1 1.1E+02 0.0024 27.4 11.8 8 188-195 10-17 (201)
152 PF10779 XhlA: Haemolysin XhlA 64.0 58 0.0013 24.3 8.5 53 214-266 3-55 (71)
153 cd00584 Prefoldin_alpha Prefol 64.0 77 0.0017 25.6 10.4 81 176-256 13-126 (129)
154 KOG0243 Kinesin-like protein [ 63.7 1.2E+02 0.0027 33.9 12.8 84 178-261 443-527 (1041)
155 KOG1760 Molecular chaperone Pr 63.4 92 0.002 26.6 9.4 73 179-254 33-118 (131)
156 TIGR00606 rad50 rad50. This fa 62.9 88 0.0019 35.3 12.0 34 231-264 231-264 (1311)
157 PF07716 bZIP_2: Basic region 62.8 33 0.00072 24.1 5.9 31 223-253 24-54 (54)
158 KOG0979 Structural maintenance 62.7 1.2E+02 0.0027 33.8 12.5 32 170-202 197-228 (1072)
159 PRK05771 V-type ATP synthase s 62.7 44 0.00096 34.6 9.1 36 223-258 92-127 (646)
160 PF06248 Zw10: Centromere/kine 62.6 96 0.0021 31.8 11.4 34 171-204 9-47 (593)
161 KOG2412 Nuclear-export-signal 62.2 1.6E+02 0.0035 30.9 12.7 21 174-194 188-208 (591)
162 KOG3433 Protein involved in me 62.0 1.2E+02 0.0026 27.6 10.5 89 175-267 80-169 (203)
163 KOG0612 Rho-associated, coiled 61.9 71 0.0015 36.3 10.7 87 178-264 463-555 (1317)
164 KOG0804 Cytoplasmic Zn-finger 61.8 68 0.0015 32.8 9.8 9 192-200 353-361 (493)
165 KOG0250 DNA repair protein RAD 61.7 1.1E+02 0.0023 34.4 11.9 9 25-33 50-58 (1074)
166 KOG3800 Predicted E3 ubiquitin 61.0 35 0.00076 32.8 7.3 15 164-178 22-36 (300)
167 PF15070 GOLGA2L5: Putative go 60.8 69 0.0015 33.7 10.1 52 213-264 125-176 (617)
168 PF03962 Mnd1: Mnd1 family; I 60.8 67 0.0015 28.5 8.7 60 175-234 68-127 (188)
169 TIGR03017 EpsF chain length de 60.5 1.6E+02 0.0035 28.4 12.1 20 177-196 255-274 (444)
170 KOG1962 B-cell receptor-associ 59.8 1.5E+02 0.0031 27.5 11.2 48 215-262 149-196 (216)
171 COG3074 Uncharacterized protei 59.8 81 0.0018 24.5 9.7 30 214-243 22-51 (79)
172 KOG2077 JNK/SAPK-associated pr 59.5 78 0.0017 33.6 9.9 94 154-260 274-372 (832)
173 PF09730 BicD: Microtubule-ass 59.4 1.1E+02 0.0024 32.9 11.3 73 179-251 37-117 (717)
174 KOG0964 Structural maintenance 59.4 1.2E+02 0.0025 34.2 11.5 57 211-267 412-475 (1200)
175 KOG3091 Nuclear pore complex, 59.2 39 0.00085 34.7 7.7 23 181-203 339-361 (508)
176 PF13815 Dzip-like_N: Iguana/D 58.8 37 0.0008 27.7 6.3 35 219-253 82-116 (118)
177 PTZ00464 SNF-7-like protein; P 58.7 1.4E+02 0.003 27.1 10.6 27 178-204 27-53 (211)
178 PF06120 Phage_HK97_TLTM: Tail 58.7 70 0.0015 30.8 9.0 68 180-248 38-105 (301)
179 PLN02678 seryl-tRNA synthetase 58.7 95 0.0021 31.4 10.3 19 229-247 83-101 (448)
180 PF06156 DUF972: Protein of un 58.5 65 0.0014 26.3 7.6 44 215-258 13-56 (107)
181 smart00502 BBC B-Box C-termina 58.5 83 0.0018 24.2 11.7 35 222-256 55-90 (127)
182 PF05667 DUF812: Protein of un 58.3 90 0.002 32.7 10.4 33 150-183 248-283 (594)
183 PF00170 bZIP_1: bZIP transcri 58.0 57 0.0012 23.5 6.6 30 229-258 31-60 (64)
184 PF00769 ERM: Ezrin/radixin/mo 58.0 1.3E+02 0.0029 27.7 10.5 25 229-253 80-104 (246)
185 KOG2072 Translation initiation 58.0 1.2E+02 0.0026 33.4 11.2 91 152-246 521-627 (988)
186 KOG0994 Extracellular matrix g 57.9 93 0.002 35.6 10.6 55 212-266 1691-1745(1758)
187 PF00038 Filament: Intermediat 57.6 1.6E+02 0.0034 27.2 14.1 47 214-260 227-277 (312)
188 PF10234 Cluap1: Clusterin-ass 57.6 92 0.002 29.5 9.4 56 213-268 179-241 (267)
189 PF04977 DivIC: Septum formati 57.5 34 0.00074 24.9 5.4 30 221-250 21-50 (80)
190 PF09340 NuA4: Histone acetylt 57.2 30 0.00064 26.8 5.2 33 231-266 2-34 (80)
191 KOG4360 Uncharacterized coiled 56.9 75 0.0016 33.0 9.2 20 185-204 190-209 (596)
192 COG5185 HEC1 Protein involved 56.8 1.4E+02 0.0031 30.9 11.1 25 180-204 299-323 (622)
193 KOG0810 SNARE protein Syntaxin 56.8 1.9E+02 0.004 27.8 11.5 91 178-268 35-150 (297)
194 TIGR01843 type_I_hlyD type I s 56.8 1.8E+02 0.0038 27.5 12.5 24 178-201 83-106 (423)
195 PRK05431 seryl-tRNA synthetase 56.8 50 0.0011 32.8 8.0 20 228-247 77-96 (425)
196 PF02403 Seryl_tRNA_N: Seryl-t 56.7 95 0.0021 24.4 10.3 19 217-235 74-92 (108)
197 KOG4657 Uncharacterized conser 56.4 1.8E+02 0.0038 27.4 10.9 7 262-268 151-157 (246)
198 PF08647 BRE1: BRE1 E3 ubiquit 56.3 99 0.0021 24.4 11.1 79 182-266 2-87 (96)
199 KOG4571 Activating transcripti 55.8 48 0.001 31.9 7.3 42 223-264 247-288 (294)
200 TIGR00570 cdk7 CDK-activating 55.7 1.3E+02 0.0028 29.2 10.2 25 143-168 66-90 (309)
201 PF05911 DUF869: Plant protein 55.7 1.4E+02 0.003 32.4 11.4 44 213-256 123-166 (769)
202 KOG0288 WD40 repeat protein Ti 55.4 1.3E+02 0.0029 30.5 10.5 14 180-193 10-23 (459)
203 PF06005 DUF904: Protein of un 55.3 92 0.002 23.8 8.4 45 211-255 19-63 (72)
204 KOG1899 LAR transmembrane tyro 55.3 1.4E+02 0.003 32.1 11.0 22 151-172 83-105 (861)
205 PRK08032 fliD flagellar cappin 55.2 20 0.00044 35.8 5.0 30 236-268 411-440 (462)
206 cd07648 F-BAR_FCHO The F-BAR ( 55.2 1.7E+02 0.0036 26.7 13.3 84 184-267 121-204 (261)
207 TIGR00634 recN DNA repair prot 55.2 94 0.002 31.7 9.8 26 226-251 348-373 (563)
208 PF10481 CENP-F_N: Cenp-F N-te 55.1 1.7E+02 0.0036 28.3 10.6 25 178-202 20-44 (307)
209 PF02388 FemAB: FemAB family; 54.9 46 0.00099 32.6 7.3 74 187-261 212-296 (406)
210 KOG3564 GTPase-activating prot 54.9 1E+02 0.0023 31.9 9.8 33 172-204 17-49 (604)
211 PRK05431 seryl-tRNA synthetase 54.8 1.2E+02 0.0026 30.1 10.3 14 234-247 76-89 (425)
212 KOG0933 Structural maintenance 54.8 1.2E+02 0.0025 34.2 10.7 17 72-88 571-587 (1174)
213 KOG4643 Uncharacterized coiled 54.7 64 0.0014 36.1 8.7 56 211-266 171-226 (1195)
214 PF06160 EzrA: Septation ring 54.7 1.1E+02 0.0025 31.3 10.4 52 143-196 40-95 (560)
215 TIGR03007 pepcterm_ChnLen poly 54.4 2E+02 0.0044 28.3 11.8 26 178-203 206-231 (498)
216 COG1730 GIM5 Predicted prefold 54.3 71 0.0015 27.6 7.5 46 211-256 95-140 (145)
217 PF13600 DUF4140: N-terminal d 54.1 33 0.00071 26.8 5.1 26 229-254 75-100 (104)
218 PF14282 FlxA: FlxA-like prote 54.0 89 0.0019 25.2 7.7 18 175-192 18-35 (106)
219 TIGR01000 bacteriocin_acc bact 54.0 2.3E+02 0.005 28.0 12.7 23 180-202 101-123 (457)
220 PF08286 Spc24: Spc24 subunit 53.8 4.6 0.0001 33.0 0.2 19 231-249 20-38 (118)
221 PF02050 FliJ: Flagellar FliJ 53.7 95 0.0021 23.5 12.1 54 212-265 61-115 (123)
222 PRK04778 septation ring format 53.7 2E+02 0.0044 29.5 12.0 51 217-267 355-405 (569)
223 smart00338 BRLZ basic region l 53.6 67 0.0014 23.2 6.3 26 232-257 34-59 (65)
224 COG3883 Uncharacterized protei 53.6 71 0.0015 30.3 8.0 17 235-251 70-86 (265)
225 PF04977 DivIC: Septum formati 53.5 38 0.00082 24.7 5.1 26 218-243 25-50 (80)
226 KOG4403 Cell surface glycoprot 53.5 58 0.0013 33.3 7.7 24 171-194 254-277 (575)
227 PF03961 DUF342: Protein of un 53.5 59 0.0013 32.2 7.9 76 179-261 330-405 (451)
228 TIGR02680 conserved hypothetic 53.5 1.7E+02 0.0036 33.5 12.2 20 181-200 242-261 (1353)
229 KOG0996 Structural maintenance 53.4 81 0.0018 35.8 9.4 30 227-256 461-490 (1293)
230 KOG4673 Transcription factor T 53.4 1.8E+02 0.0038 31.7 11.4 20 186-205 463-482 (961)
231 cd07674 F-BAR_FCHO1 The F-BAR 53.3 1.8E+02 0.004 26.6 13.0 87 181-267 118-204 (261)
232 TIGR01554 major_cap_HK97 phage 53.1 1.3E+02 0.0029 28.7 10.1 19 179-197 2-20 (378)
233 smart00338 BRLZ basic region l 53.1 58 0.0013 23.5 5.9 34 213-246 29-62 (65)
234 PF09755 DUF2046: Uncharacteri 53.0 2.3E+02 0.0049 27.6 12.9 29 228-256 139-167 (310)
235 PRK06798 fliD flagellar cappin 52.6 19 0.00042 35.9 4.4 33 233-268 381-413 (440)
236 PF12999 PRKCSH-like: Glucosid 52.5 60 0.0013 29.0 7.0 13 164-176 98-110 (176)
237 KOG4673 Transcription factor T 52.5 1.5E+02 0.0032 32.3 10.7 50 155-206 390-439 (961)
238 PF04201 TPD52: Tumour protein 52.4 60 0.0013 28.7 6.8 54 213-268 32-85 (162)
239 PF03234 CDC37_N: Cdc37 N term 52.4 49 0.0011 29.4 6.4 23 239-261 139-161 (177)
240 KOG0161 Myosin class II heavy 52.1 1.9E+02 0.004 34.7 12.4 62 178-239 1479-1541(1930)
241 PF05546 She9_MDM33: She9 / Md 52.0 1.9E+02 0.0042 26.5 12.0 114 144-267 13-145 (207)
242 PF15233 SYCE1: Synaptonemal c 52.0 88 0.0019 26.9 7.5 43 212-254 8-50 (134)
243 PRK15422 septal ring assembly 51.9 1.2E+02 0.0025 24.0 8.0 43 211-253 19-61 (79)
244 KOG1937 Uncharacterized conser 51.7 1.5E+02 0.0033 30.5 10.3 34 230-263 344-377 (521)
245 PF04201 TPD52: Tumour protein 51.4 51 0.0011 29.1 6.3 37 223-259 28-64 (162)
246 KOG0994 Extracellular matrix g 51.3 1.1E+02 0.0024 35.1 9.9 94 139-241 1197-1291(1758)
247 cd07666 BAR_SNX7 The Bin/Amphi 51.3 2.1E+02 0.0045 26.7 11.8 13 145-157 66-78 (243)
248 KOG1103 Predicted coiled-coil 51.3 2.2E+02 0.0048 28.6 11.2 29 144-172 56-85 (561)
249 PF10458 Val_tRNA-synt_C: Valy 51.2 95 0.0021 22.7 7.2 24 181-204 2-25 (66)
250 PRK10698 phage shock protein P 51.1 1.9E+02 0.0042 26.2 10.9 112 149-260 1-128 (222)
251 TIGR00414 serS seryl-tRNA synt 51.1 70 0.0015 31.7 8.0 14 181-194 35-48 (418)
252 PF09738 DUF2051: Double stran 50.8 1.5E+02 0.0032 28.6 9.8 49 212-260 121-169 (302)
253 TIGR00634 recN DNA repair prot 50.7 1.6E+02 0.0034 30.1 10.6 20 179-198 276-295 (563)
254 PF00170 bZIP_1: bZIP transcri 50.7 75 0.0016 22.9 6.2 31 215-245 31-61 (64)
255 PF07926 TPR_MLP1_2: TPR/MLP1/ 50.7 1.4E+02 0.0031 24.6 9.5 23 238-260 98-120 (132)
256 PF10168 Nup88: Nuclear pore c 50.6 1.9E+02 0.0042 30.9 11.5 15 166-180 530-544 (717)
257 COG3677 Transposase and inacti 50.5 8.8 0.00019 32.2 1.4 15 19-33 51-65 (129)
258 PF06120 Phage_HK97_TLTM: Tail 50.4 2.4E+02 0.0053 27.2 11.2 29 173-201 85-113 (301)
259 PF01496 V_ATPase_I: V-type AT 50.0 5.4 0.00012 42.0 0.0 81 179-259 34-116 (759)
260 PF14988 DUF4515: Domain of un 49.9 2E+02 0.0043 26.0 12.6 25 170-194 16-40 (206)
261 KOG1103 Predicted coiled-coil 49.9 2.4E+02 0.0052 28.4 11.2 37 225-261 239-275 (561)
262 TIGR03545 conserved hypothetic 49.8 2.6E+02 0.0057 29.0 12.1 59 191-251 192-257 (555)
263 KOG0980 Actin-binding protein 49.6 1.9E+02 0.0042 32.0 11.2 29 223-251 521-549 (980)
264 PLN02678 seryl-tRNA synthetase 49.5 67 0.0015 32.4 7.6 7 238-244 85-91 (448)
265 TIGR02449 conserved hypothetic 49.5 86 0.0019 23.7 6.4 42 214-255 11-52 (65)
266 PF00261 Tropomyosin: Tropomyo 49.3 2E+02 0.0044 26.0 13.3 26 178-203 136-161 (237)
267 PF11559 ADIP: Afadin- and alp 49.3 1.6E+02 0.0034 24.6 13.5 40 213-252 69-108 (151)
268 PF12072 DUF3552: Domain of un 49.1 1.9E+02 0.0041 25.6 12.2 40 222-261 87-126 (201)
269 KOG0239 Kinesin (KAR3 subfamil 49.0 1.7E+02 0.0036 31.2 10.7 38 230-267 240-277 (670)
270 KOG0996 Structural maintenance 48.9 1.9E+02 0.0042 33.0 11.3 47 219-265 530-576 (1293)
271 PF13815 Dzip-like_N: Iguana/D 48.8 1.4E+02 0.003 24.3 8.1 38 222-259 78-115 (118)
272 PRK10636 putative ABC transpor 48.7 1.2E+02 0.0027 31.4 9.6 6 22-27 313-318 (638)
273 TIGR02977 phageshock_pspA phag 48.7 2E+02 0.0044 25.7 11.7 48 151-200 3-55 (219)
274 PF05667 DUF812: Protein of un 48.4 3.1E+02 0.0068 28.8 12.4 27 177-203 329-355 (594)
275 PF04136 Sec34: Sec34-like fam 48.3 1.8E+02 0.0039 25.0 9.4 33 229-261 26-58 (157)
276 PF13874 Nup54: Nucleoporin co 48.3 1.4E+02 0.003 25.0 8.3 23 181-203 35-57 (141)
277 PF11471 Sugarporin_N: Maltopo 48.2 36 0.00077 25.2 4.1 16 236-251 37-52 (60)
278 TIGR03752 conj_TIGR03752 integ 48.1 2.2E+02 0.0048 29.2 10.9 45 213-257 83-128 (472)
279 COG3074 Uncharacterized protei 47.9 1.3E+02 0.0029 23.4 8.0 45 212-256 27-71 (79)
280 cd00632 Prefoldin_beta Prefold 47.7 84 0.0018 24.9 6.6 35 216-250 69-103 (105)
281 PF13166 AAA_13: AAA domain 47.7 2.4E+02 0.0053 29.0 11.6 29 175-203 362-390 (712)
282 KOG1029 Endocytic adaptor prot 47.6 2.4E+02 0.0053 31.1 11.5 27 175-201 471-497 (1118)
283 PRK13169 DNA replication intia 47.3 1E+02 0.0022 25.5 7.1 41 217-257 15-55 (110)
284 PRK00888 ftsB cell division pr 47.3 50 0.0011 26.7 5.2 25 214-238 38-62 (105)
285 TIGR02977 phageshock_pspA phag 47.2 2.1E+02 0.0046 25.6 11.6 20 180-199 56-75 (219)
286 PLN02320 seryl-tRNA synthetase 47.0 80 0.0017 32.5 7.8 28 222-249 135-162 (502)
287 PLN02320 seryl-tRNA synthetase 46.8 1.8E+02 0.0039 30.0 10.2 25 229-253 135-159 (502)
288 KOG4687 Uncharacterized coiled 46.6 2.9E+02 0.0063 27.0 11.8 54 143-204 5-58 (389)
289 PF14662 CCDC155: Coiled-coil 46.5 2.3E+02 0.005 25.8 10.7 45 215-259 86-130 (193)
290 PF09789 DUF2353: Uncharacteri 46.5 2.9E+02 0.0063 26.9 12.8 83 176-264 72-166 (319)
291 PF09730 BicD: Microtubule-ass 46.5 2.3E+02 0.0049 30.6 11.2 22 181-202 32-53 (717)
292 PF02671 PAH: Paired amphipath 46.3 53 0.0011 22.2 4.5 42 192-233 1-42 (47)
293 TIGR00293 prefoldin, archaeal 46.3 1.5E+02 0.0034 23.7 11.1 78 177-254 14-123 (126)
294 PF05701 WEMBL: Weak chloropla 46.2 3.4E+02 0.0074 27.7 13.4 29 171-199 64-92 (522)
295 PF11180 DUF2968: Protein of u 46.2 2.3E+02 0.005 25.8 11.8 40 221-260 144-183 (192)
296 PF06156 DUF972: Protein of un 46.1 1.6E+02 0.0034 24.1 8.0 38 214-251 19-56 (107)
297 KOG2391 Vacuolar sorting prote 46.1 1.1E+02 0.0024 30.3 8.2 33 222-254 244-276 (365)
298 COG5493 Uncharacterized conser 45.8 2.5E+02 0.0054 26.0 10.0 20 174-193 44-63 (231)
299 PF12128 DUF3584: Protein of u 45.7 3.8E+02 0.0083 30.2 13.4 113 145-259 748-869 (1201)
300 PF05557 MAD: Mitotic checkpoi 45.5 7 0.00015 41.0 0.0 74 180-256 309-382 (722)
301 PF13747 DUF4164: Domain of un 45.5 1.5E+02 0.0032 23.3 11.7 32 227-258 35-66 (89)
302 PRK03992 proteasome-activating 45.0 97 0.0021 30.1 7.8 45 214-258 5-49 (389)
303 PF15254 CCDC14: Coiled-coil d 44.9 2.2E+02 0.0047 31.2 10.7 42 221-262 505-546 (861)
304 PF06717 DUF1202: Protein of u 44.6 70 0.0015 30.9 6.4 45 211-255 132-176 (308)
305 KOG0964 Structural maintenance 44.6 2.3E+02 0.0049 32.0 10.9 42 223-264 320-361 (1200)
306 COG3416 Uncharacterized protei 44.3 1.5E+02 0.0032 27.6 8.2 73 189-261 3-78 (233)
307 TIGR02338 gimC_beta prefoldin, 44.3 93 0.002 24.9 6.4 31 227-257 70-100 (110)
308 PRK10246 exonuclease subunit S 44.2 3.7E+02 0.008 29.9 12.8 49 210-258 822-870 (1047)
309 PF05278 PEARLI-4: Arabidopsis 44.2 2E+02 0.0044 27.4 9.5 83 178-260 168-250 (269)
310 PF08946 Osmo_CC: Osmosensory 44.2 51 0.0011 23.5 4.1 27 233-259 14-40 (46)
311 PRK11281 hypothetical protein; 44.1 2.9E+02 0.0062 31.3 12.0 60 178-237 82-148 (1113)
312 PF13166 AAA_13: AAA domain 43.9 3.8E+02 0.0083 27.6 12.3 25 178-202 372-396 (712)
313 PF08826 DMPK_coil: DMPK coile 43.9 1.3E+02 0.0029 22.3 9.0 30 214-243 29-58 (61)
314 PF10212 TTKRSYEDQ: Predicted 43.9 1.5E+02 0.0033 30.7 9.2 22 175-196 412-433 (518)
315 PF13514 AAA_27: AAA domain 43.9 3.5E+02 0.0076 30.1 12.6 27 178-204 745-771 (1111)
316 PF06810 Phage_GP20: Phage min 43.8 2.1E+02 0.0046 24.6 9.8 47 181-227 18-68 (155)
317 PF05600 DUF773: Protein of un 43.7 2.8E+02 0.006 28.5 11.0 12 147-158 352-363 (507)
318 KOG4403 Cell surface glycoprot 43.5 1.2E+02 0.0026 31.2 8.1 17 147-163 212-228 (575)
319 PRK13182 racA polar chromosome 43.4 2.1E+02 0.0045 25.3 8.9 26 238-263 122-147 (175)
320 PF09728 Taxilin: Myosin-like 43.4 3E+02 0.0065 26.3 12.5 53 215-267 55-107 (309)
321 PRK12705 hypothetical protein; 43.3 3.7E+02 0.008 27.8 11.8 38 223-260 87-124 (508)
322 PF07195 FliD_C: Flagellar hoo 43.2 50 0.0011 29.8 5.2 35 231-268 193-227 (239)
323 PF13094 CENP-Q: CENP-Q, a CEN 43.1 2E+02 0.0044 24.2 9.1 37 215-251 46-82 (160)
324 PRK11091 aerobic respiration c 43.1 4E+02 0.0087 27.6 12.7 27 238-264 131-157 (779)
325 PRK00398 rpoP DNA-directed RNA 43.1 18 0.00039 24.6 1.8 25 9-33 9-33 (46)
326 PF12999 PRKCSH-like: Glucosid 42.9 1.3E+02 0.0027 27.0 7.5 12 165-176 94-107 (176)
327 PRK10869 recombination and rep 42.7 3.4E+02 0.0074 27.9 11.6 30 224-253 341-370 (553)
328 TIGR03831 YgiT_finger YgiT-typ 42.6 11 0.00023 24.9 0.6 15 16-30 27-41 (46)
329 PF00261 Tropomyosin: Tropomyo 42.4 2.6E+02 0.0057 25.3 14.0 16 236-251 202-217 (237)
330 PF15397 DUF4618: Domain of un 42.3 3E+02 0.0066 26.0 11.1 43 215-257 65-107 (258)
331 TIGR02209 ftsL_broad cell divi 42.3 72 0.0016 23.8 5.2 31 221-251 28-58 (85)
332 KOG0288 WD40 repeat protein Ti 42.0 2.7E+02 0.0058 28.4 10.3 39 218-256 84-122 (459)
333 PF14942 Muted: Organelle biog 41.9 2.3E+02 0.0049 24.4 13.1 102 148-259 38-139 (145)
334 PRK11519 tyrosine kinase; Prov 41.9 2.5E+02 0.0053 29.7 10.7 26 237-262 345-370 (719)
335 KOG0249 LAR-interacting protei 41.5 2.3E+02 0.005 30.9 10.2 41 218-258 217-257 (916)
336 PF07334 IFP_35_N: Interferon- 41.5 57 0.0012 25.5 4.5 18 224-241 7-24 (76)
337 PRK11448 hsdR type I restricti 41.4 1.8E+02 0.0038 32.9 9.9 25 178-202 151-175 (1123)
338 PF04880 NUDE_C: NUDE protein, 41.3 51 0.0011 29.1 4.8 10 179-188 3-12 (166)
339 TIGR02209 ftsL_broad cell divi 41.3 1.5E+02 0.0032 22.1 7.1 14 237-250 37-50 (85)
340 PF09744 Jnk-SapK_ap_N: JNK_SA 41.3 2.4E+02 0.0053 24.6 10.1 39 222-260 87-125 (158)
341 cd04779 HTH_MerR-like_sg4 Heli 41.2 1.3E+02 0.0027 25.4 6.9 29 232-260 82-110 (134)
342 PF15188 CCDC-167: Coiled-coil 41.2 1.8E+02 0.0039 23.1 7.6 60 182-245 4-64 (85)
343 PF15066 CAGE1: Cancer-associa 41.1 3.5E+02 0.0076 28.0 11.0 84 177-260 398-507 (527)
344 COG3879 Uncharacterized protei 41.1 1.3E+02 0.0029 28.2 7.7 31 214-244 54-84 (247)
345 COG5019 CDC3 Septin family pro 41.0 1.7E+02 0.0037 29.1 8.7 36 221-256 332-367 (373)
346 KOG0993 Rab5 GTPase effector R 41.0 3.4E+02 0.0074 27.8 10.8 47 212-258 136-182 (542)
347 KOG0999 Microtubule-associated 40.7 3E+02 0.0065 29.3 10.7 66 178-243 116-182 (772)
348 KOG4196 bZIP transcription fac 40.6 76 0.0016 27.3 5.5 25 234-258 77-101 (135)
349 PF05377 FlaC_arch: Flagella a 40.5 1.5E+02 0.0032 21.8 6.3 29 224-252 7-35 (55)
350 PRK10246 exonuclease subunit S 40.4 3.1E+02 0.0068 30.4 11.5 61 176-238 184-244 (1047)
351 TIGR01005 eps_transp_fam exopo 40.2 2.9E+02 0.0062 29.1 10.8 84 175-264 287-378 (754)
352 KOG4848 Extracellular matrix-a 40.2 3E+02 0.0065 25.4 9.9 74 170-243 140-219 (225)
353 PF03148 Tektin: Tektin family 40.1 3.7E+02 0.008 26.3 11.8 84 172-255 254-362 (384)
354 PF11221 Med21: Subunit 21 of 40.1 76 0.0017 26.8 5.5 33 211-243 98-130 (144)
355 KOG0976 Rho/Rac1-interacting s 40.1 3.2E+02 0.0069 30.5 11.0 12 181-192 104-115 (1265)
356 PF03811 Zn_Tnp_IS1: InsA N-te 40.1 12 0.00026 25.0 0.5 15 14-28 21-36 (36)
357 COG0419 SbcC ATPase involved i 40.1 4.3E+02 0.0093 28.7 12.4 36 165-200 160-195 (908)
358 PF13865 FoP_duplication: C-te 40.0 51 0.0011 25.0 4.0 13 255-267 58-70 (74)
359 PF13600 DUF4140: N-terminal d 39.9 74 0.0016 24.8 5.1 33 218-250 71-103 (104)
360 KOG0933 Structural maintenance 39.8 4.3E+02 0.0093 30.0 12.1 20 182-201 786-805 (1174)
361 COG5293 Predicted ATPase [Gene 39.8 4E+02 0.0086 27.8 11.2 18 221-238 383-400 (591)
362 PF09766 FimP: Fms-interacting 39.7 1.4E+02 0.0031 29.0 8.0 89 174-262 31-139 (355)
363 KOG0971 Microtubule-associated 39.7 6.1E+02 0.013 28.7 16.3 14 181-194 229-242 (1243)
364 KOG2264 Exostosin EXT1L [Signa 39.6 3.4E+02 0.0073 29.1 10.9 24 232-255 122-145 (907)
365 PRK05689 fliJ flagellar biosyn 39.5 2.2E+02 0.0047 23.5 12.9 57 191-253 65-121 (147)
366 PF05149 Flagellar_rod: Parafl 39.3 3.6E+02 0.0077 25.9 12.4 31 170-200 18-48 (289)
367 PF12128 DUF3584: Protein of u 39.3 4E+02 0.0087 30.0 12.3 87 178-264 241-339 (1201)
368 PF11221 Med21: Subunit 21 of 39.2 2.3E+02 0.0051 23.8 9.1 28 229-256 102-129 (144)
369 PF13842 Tnp_zf-ribbon_2: DDE_ 39.2 14 0.00029 24.0 0.6 15 20-34 15-29 (32)
370 PF10481 CENP-F_N: Cenp-F N-te 39.1 1.8E+02 0.004 28.0 8.3 85 175-262 42-126 (307)
371 PF03234 CDC37_N: Cdc37 N term 39.0 2.2E+02 0.0048 25.3 8.4 33 223-255 130-162 (177)
372 TIGR02473 flagell_FliJ flagell 38.8 2E+02 0.0044 23.0 10.6 49 194-248 65-113 (141)
373 PF09727 CortBP2: Cortactin-bi 38.7 3E+02 0.0066 24.9 11.3 12 170-181 93-104 (192)
374 PF10174 Cast: RIM-binding pro 38.7 2.8E+02 0.0061 30.2 10.6 37 215-251 463-499 (775)
375 PRK10361 DNA recombination pro 38.5 4.6E+02 0.0099 27.0 12.1 12 253-264 100-111 (475)
376 PF01920 Prefoldin_2: Prefoldi 38.5 1.8E+02 0.0038 22.2 8.0 33 226-258 64-96 (106)
377 PF07321 YscO: Type III secret 38.4 2.6E+02 0.0057 24.2 11.8 70 179-248 28-105 (152)
378 PTZ00454 26S protease regulato 38.4 1.3E+02 0.0029 29.6 7.7 38 220-257 25-62 (398)
379 PRK14160 heat shock protein Gr 38.4 2.2E+02 0.0048 26.0 8.5 35 217-251 61-95 (211)
380 KOG2002 TPR-containing nuclear 38.3 4.6E+02 0.01 29.5 12.1 35 147-181 783-823 (1018)
381 COG4477 EzrA Negative regulato 38.3 1.5E+02 0.0032 31.0 8.1 20 185-204 339-358 (570)
382 PRK02793 phi X174 lysis protei 38.2 1.7E+02 0.0038 22.0 8.5 43 215-257 6-48 (72)
383 PRK07737 fliD flagellar cappin 38.1 49 0.0011 33.6 4.7 31 235-268 445-475 (501)
384 PF04889 Cwf_Cwc_15: Cwf15/Cwc 38.1 92 0.002 29.0 6.1 14 212-225 148-161 (244)
385 PRK04406 hypothetical protein; 37.7 1.9E+02 0.004 22.2 8.0 43 215-257 9-51 (75)
386 PRK05771 V-type ATP synthase s 37.7 2.7E+02 0.0059 28.9 10.1 34 229-262 91-124 (646)
387 COG2088 SpoVG Uncharacterized 37.6 43 0.00094 27.0 3.4 33 163-195 58-90 (95)
388 KOG0249 LAR-interacting protei 37.3 4E+02 0.0086 29.2 11.1 48 217-264 209-256 (916)
389 PF13870 DUF4201: Domain of un 37.1 2.7E+02 0.0058 23.9 9.5 74 175-249 104-177 (177)
390 PF07851 TMPIT: TMPIT-like pro 37.1 4.1E+02 0.0089 26.0 10.8 54 178-237 6-59 (330)
391 PF10168 Nup88: Nuclear pore c 36.8 5.3E+02 0.011 27.7 12.2 36 213-248 582-617 (717)
392 PF07716 bZIP_2: Basic region 36.8 1.5E+02 0.0032 20.8 5.9 24 234-257 28-51 (54)
393 PF10174 Cast: RIM-binding pro 36.6 4.4E+02 0.0096 28.7 11.6 18 174-192 72-89 (775)
394 KOG0796 Spliceosome subunit [R 36.5 2.7E+02 0.0059 27.2 9.1 43 156-202 44-91 (319)
395 KOG4010 Coiled-coil protein TP 36.4 1.1E+02 0.0024 28.0 6.1 54 213-268 47-100 (208)
396 PRK15422 septal ring assembly 36.4 2.1E+02 0.0046 22.5 8.5 9 250-258 51-59 (79)
397 PF06160 EzrA: Septation ring 36.4 3.7E+02 0.0079 27.7 10.7 38 163-202 271-308 (560)
398 PF09403 FadA: Adhesion protei 36.3 2.3E+02 0.005 23.9 7.7 11 178-188 29-39 (126)
399 PF11853 DUF3373: Protein of u 36.3 34 0.00073 35.1 3.2 22 229-250 36-57 (489)
400 TIGR01554 major_cap_HK97 phage 36.2 1.9E+02 0.004 27.7 8.2 24 228-251 38-61 (378)
401 KOG4643 Uncharacterized coiled 36.2 1.7E+02 0.0037 33.0 8.5 55 210-264 177-231 (1195)
402 KOG0963 Transcription factor/C 36.0 5.7E+02 0.012 27.3 12.6 22 182-203 248-269 (629)
403 KOG4787 Uncharacterized conser 35.9 2.8E+02 0.0061 29.7 9.7 73 179-251 462-542 (852)
404 PF07956 DUF1690: Protein of U 35.9 2.8E+02 0.0061 23.7 8.7 42 217-258 42-95 (142)
405 PF09731 Mitofilin: Mitochondr 35.9 4.8E+02 0.011 26.5 12.7 25 166-190 248-272 (582)
406 PRK10476 multidrug resistance 35.7 3.8E+02 0.0082 25.2 11.8 17 180-196 125-141 (346)
407 PF06818 Fez1: Fez1; InterPro 35.4 3.1E+02 0.0067 25.1 8.9 7 260-266 163-169 (202)
408 PF02994 Transposase_22: L1 tr 35.2 1.6E+02 0.0035 28.8 7.6 42 214-255 141-182 (370)
409 PRK14127 cell division protein 35.2 69 0.0015 26.5 4.3 44 197-246 30-73 (109)
410 PF12777 MT: Microtubule-bindi 34.8 1.4E+02 0.0029 28.7 6.9 31 219-249 244-274 (344)
411 KOG0971 Microtubule-associated 34.6 3.8E+02 0.0083 30.2 10.7 42 219-260 398-439 (1243)
412 PF13514 AAA_27: AAA domain 34.5 5.1E+02 0.011 28.8 12.1 35 215-249 894-928 (1111)
413 KOG2837 Protein containing a U 34.4 7.1 0.00015 37.3 -1.8 12 20-31 24-35 (309)
414 PF06698 DUF1192: Protein of u 34.4 1.6E+02 0.0035 21.8 5.7 34 210-243 21-54 (59)
415 TIGR00618 sbcc exonuclease Sbc 34.4 6.7E+02 0.015 27.7 13.0 30 222-251 826-855 (1042)
416 PRK09343 prefoldin subunit bet 34.2 1.9E+02 0.0041 23.8 6.8 39 213-251 74-112 (121)
417 PRK13169 DNA replication intia 34.1 2.7E+02 0.0058 23.0 8.0 38 213-250 18-55 (110)
418 cd07667 BAR_SNX30 The Bin/Amph 34.1 3.9E+02 0.0085 24.9 12.0 54 150-203 89-152 (240)
419 PF13094 CENP-Q: CENP-Q, a CEN 33.9 2.7E+02 0.0058 23.5 8.0 34 220-253 44-77 (160)
420 PF14193 DUF4315: Domain of un 33.8 1.5E+02 0.0033 23.3 5.8 28 215-242 6-33 (83)
421 PRK02119 hypothetical protein; 33.8 2.1E+02 0.0046 21.7 8.1 40 218-257 10-49 (73)
422 PF07795 DUF1635: Protein of u 33.8 3.2E+02 0.007 25.2 8.8 40 216-255 25-64 (214)
423 PF15619 Lebercilin: Ciliary p 33.6 3.5E+02 0.0076 24.2 12.1 35 217-251 75-109 (194)
424 PF15458 NTR2: Nineteen comple 33.5 1.4E+02 0.003 27.8 6.5 38 216-253 214-251 (254)
425 TIGR03545 conserved hypothetic 33.4 2.5E+02 0.0053 29.3 8.9 13 211-223 192-204 (555)
426 KOG4674 Uncharacterized conser 33.3 5.6E+02 0.012 30.8 12.3 29 177-205 130-158 (1822)
427 COG2919 Septum formation initi 32.9 2.1E+02 0.0046 23.4 6.9 35 219-253 52-86 (117)
428 PF07028 DUF1319: Protein of u 32.7 2E+02 0.0044 24.5 6.8 17 142-158 19-35 (126)
429 PF05761 5_nucleotid: 5' nucle 32.5 1.3E+02 0.0029 30.3 6.7 28 176-204 322-349 (448)
430 PF08286 Spc24: Spc24 subunit 32.5 16 0.00034 29.8 0.2 39 222-260 4-42 (118)
431 PF05377 FlaC_arch: Flagella a 32.3 2.1E+02 0.0044 21.1 6.3 37 214-250 4-40 (55)
432 PF15188 CCDC-167: Coiled-coil 32.2 2.2E+02 0.0047 22.6 6.5 27 235-261 40-66 (85)
433 PTZ00454 26S protease regulato 32.1 2E+02 0.0044 28.3 7.8 32 229-260 27-58 (398)
434 PF07111 HCR: Alpha helical co 32.1 6E+02 0.013 27.6 11.5 77 180-257 475-554 (739)
435 KOG0243 Kinesin-like protein [ 32.0 5.3E+02 0.011 29.2 11.4 20 175-194 403-422 (1041)
436 PF04859 DUF641: Plant protein 31.9 1.5E+02 0.0033 25.2 6.0 49 149-197 11-66 (131)
437 KOG0163 Myosin class VI heavy 31.8 7.3E+02 0.016 27.7 12.1 13 171-183 902-914 (1259)
438 KOG3647 Predicted coiled-coil 31.8 4.9E+02 0.011 25.3 10.1 33 143-175 53-85 (338)
439 PF03980 Nnf1: Nnf1 ; InterPr 31.7 2.6E+02 0.0056 22.1 10.9 77 176-252 14-108 (109)
440 PRK10803 tol-pal system protei 31.5 2.9E+02 0.0062 25.6 8.3 44 213-256 57-100 (263)
441 PRK14162 heat shock protein Gr 31.5 1.9E+02 0.0041 26.1 6.9 38 216-253 38-75 (194)
442 TIGR01062 parC_Gneg DNA topois 31.3 3E+02 0.0065 29.7 9.3 33 218-250 417-450 (735)
443 PF04849 HAP1_N: HAP1 N-termin 31.3 5E+02 0.011 25.2 11.9 25 229-253 260-284 (306)
444 PF12718 Tropomyosin_1: Tropom 31.3 3.3E+02 0.0071 23.1 10.9 23 233-255 82-104 (143)
445 KOG1151 Tousled-like protein k 31.1 91 0.002 32.5 5.2 34 219-252 416-449 (775)
446 KOG4364 Chromatin assembly fac 31.1 4.5E+02 0.0097 28.5 10.3 20 21-40 121-140 (811)
447 PF11471 Sugarporin_N: Maltopo 31.0 1.2E+02 0.0025 22.5 4.5 27 223-249 31-57 (60)
448 KOG4010 Coiled-coil protein TP 30.7 2E+02 0.0044 26.3 6.8 21 180-200 48-68 (208)
449 PRK06664 fliD flagellar hook-a 30.6 72 0.0016 33.8 4.6 32 234-268 603-634 (661)
450 KOG4343 bZIP transcription fac 30.6 1.2E+02 0.0025 31.9 5.9 31 222-252 307-337 (655)
451 PF07334 IFP_35_N: Interferon- 30.5 1.1E+02 0.0024 23.9 4.5 23 236-258 5-27 (76)
452 PF05911 DUF869: Plant protein 30.5 7.5E+02 0.016 27.0 13.7 23 175-197 588-610 (769)
453 COG1842 PspA Phage shock prote 30.5 4.3E+02 0.0093 24.3 12.1 108 151-260 3-135 (225)
454 PF05565 Sipho_Gp157: Siphovir 30.4 3.5E+02 0.0076 23.2 9.5 26 233-258 49-74 (162)
455 PF14197 Cep57_CLD_2: Centroso 30.3 2.4E+02 0.0052 21.3 9.0 62 188-255 3-64 (69)
456 KOG0018 Structural maintenance 30.3 4.7E+02 0.01 29.8 10.6 14 50-64 627-640 (1141)
457 PF10359 Fmp27_WPPW: RNA pol I 30.3 3E+02 0.0065 27.7 8.8 66 176-245 163-228 (475)
458 PF12998 ING: Inhibitor of gro 30.1 2.5E+02 0.0054 21.4 8.0 76 177-259 23-100 (105)
459 PRK07720 fliJ flagellar biosyn 30.0 3.2E+02 0.0069 22.6 13.0 53 191-249 65-117 (146)
460 PRK03947 prefoldin subunit alp 30.0 3.1E+02 0.0068 22.5 10.6 38 223-260 93-130 (140)
461 TIGR01730 RND_mfp RND family e 30.0 3.2E+02 0.007 24.5 8.3 20 178-197 73-92 (322)
462 PF05103 DivIVA: DivIVA protei 30.0 20 0.00044 28.8 0.4 32 174-205 23-54 (131)
463 PF05384 DegS: Sensor protein 29.9 3.8E+02 0.0082 23.4 10.4 39 213-251 87-125 (159)
464 KOG0976 Rho/Rac1-interacting s 29.9 5.5E+02 0.012 28.7 10.8 42 159-200 237-283 (1265)
465 COG4985 ABC-type phosphate tra 29.9 5E+02 0.011 24.8 9.7 28 229-256 219-246 (289)
466 TIGR03007 pepcterm_ChnLen poly 29.7 5.6E+02 0.012 25.3 12.8 70 176-245 161-232 (498)
467 PF14335 DUF4391: Domain of un 29.6 1.5E+02 0.0033 26.6 6.0 37 217-253 182-220 (221)
468 KOG4603 TBP-1 interacting prot 29.6 2E+02 0.0044 26.0 6.6 46 217-262 79-124 (201)
469 PRK14148 heat shock protein Gr 29.6 2.9E+02 0.0062 25.0 7.7 34 218-251 41-74 (195)
470 KOG0978 E3 ubiquitin ligase in 29.3 7.6E+02 0.016 26.7 12.0 44 217-260 566-609 (698)
471 KOG4302 Microtubule-associated 29.3 1.5E+02 0.0033 31.6 6.7 40 222-261 101-140 (660)
472 PF12329 TMF_DNA_bd: TATA elem 29.3 2.5E+02 0.0055 21.2 9.1 34 219-252 35-68 (74)
473 PF10883 DUF2681: Protein of u 29.2 2.4E+02 0.0052 22.4 6.3 38 218-255 24-61 (87)
474 COG1345 FliD Flagellar capping 29.1 71 0.0015 32.6 4.1 30 236-268 427-456 (483)
475 PF04799 Fzo_mitofusin: fzo-li 29.0 4.1E+02 0.0089 23.7 8.4 65 187-260 102-166 (171)
476 PRK02195 V-type ATP synthase s 28.9 3E+02 0.0065 24.6 7.7 54 216-269 9-62 (201)
477 PF13863 DUF4200: Domain of un 28.8 3E+02 0.0065 21.9 11.7 73 179-264 35-107 (126)
478 PF15643 Tox-PL-2: Papain fold 28.8 39 0.00085 27.7 1.8 15 170-184 21-35 (100)
479 PF05557 MAD: Mitotic checkpoi 28.7 4.9E+02 0.011 27.5 10.3 82 178-259 505-627 (722)
480 KOG0612 Rho-associated, coiled 28.6 6.4E+02 0.014 29.2 11.4 94 174-269 589-683 (1317)
481 PF09787 Golgin_A5: Golgin sub 28.5 6.4E+02 0.014 25.6 11.8 93 174-268 219-325 (511)
482 KOG4593 Mitotic checkpoint pro 28.4 7.9E+02 0.017 26.7 11.8 90 178-267 421-511 (716)
483 PF04799 Fzo_mitofusin: fzo-li 28.1 4.3E+02 0.0094 23.6 8.6 54 212-269 115-168 (171)
484 KOG4674 Uncharacterized conser 28.1 6E+02 0.013 30.6 11.4 79 175-259 79-157 (1822)
485 cd07673 F-BAR_FCHO2 The F-BAR 28.1 4.9E+02 0.011 24.2 13.0 93 177-269 121-213 (269)
486 COG1340 Uncharacterized archae 28.1 5.6E+02 0.012 24.8 11.4 86 178-263 160-253 (294)
487 COG3334 Uncharacterized conser 28.1 2.8E+02 0.0061 25.2 7.3 45 219-263 65-109 (192)
488 PF11740 KfrA_N: Plasmid repli 28.0 2.8E+02 0.0061 21.8 6.7 45 212-256 76-120 (120)
489 KOG4809 Rab6 GTPase-interactin 27.9 3.6E+02 0.0078 28.5 8.8 79 177-257 276-371 (654)
490 PF06637 PV-1: PV-1 protein (P 27.7 6.2E+02 0.013 25.7 10.1 75 179-255 302-380 (442)
491 cd00890 Prefoldin Prefoldin is 27.6 2.5E+02 0.0054 22.2 6.4 39 212-250 89-127 (129)
492 PF12958 DUF3847: Protein of u 27.6 2.1E+02 0.0046 22.7 5.8 40 217-256 1-40 (86)
493 KOG3501 Molecular chaperone Pr 27.6 3.7E+02 0.0079 22.5 11.2 80 174-261 32-111 (114)
494 PF08785 Ku_PK_bind: Ku C term 27.6 45 0.00099 27.2 2.1 47 153-204 29-75 (120)
495 KOG2577 Transcription factor E 27.5 1.2E+02 0.0026 30.0 5.2 43 221-263 141-183 (354)
496 PF10498 IFT57: Intra-flagella 27.5 6E+02 0.013 25.0 13.7 110 137-256 210-319 (359)
497 PF10211 Ax_dynein_light: Axon 27.4 4.4E+02 0.0095 23.3 13.0 84 171-260 101-185 (189)
498 KOG4603 TBP-1 interacting prot 27.3 4.8E+02 0.01 23.7 13.5 91 174-268 84-182 (201)
499 PF10212 TTKRSYEDQ: Predicted 27.3 7.3E+02 0.016 25.9 10.9 72 175-252 412-483 (518)
500 COG0216 PrfA Protein chain rel 27.3 4.5E+02 0.0097 26.2 9.0 62 178-250 35-102 (363)
No 1
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-37 Score=293.50 Aligned_cols=234 Identities=47% Similarity=0.705 Sum_probs=211.5
Q ss_pred eeccccchhhhcccccCCcCCCCccccccccccCCCCCCceeeccCCCC-CCCCCCCCCCCCCCCcccccCCCCCCCceE
Q 024294 33 IVGVDSYADKYLNDSSRSTMHGSSIHASNSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRGSSAQSEASQSGKAMDESFV 111 (269)
Q Consensus 33 i~g~d~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~~md~s~vvlp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~eSfV 111 (269)
|||+|+|.++|+..|..+--.+.++|+..++.+..+|+++++|+|.+.+ ++.+.++++|++.. .++. ++..+.+|||
T Consensus 1 ~~g~~~s~~~~~q~~~~~~r~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~t~~~~a~~-~~~~-~~~~~~~~~~ 78 (447)
T KOG2751|consen 1 IVGVDSSANKFFQVPFPCQRCLQPIHLDNSLLGSDRMDISELVLPLHKPPQSQGGPTRPRGASS-GDAT-SGKTPQESSV 78 (447)
T ss_pred CcccccccccccCCChhhhhccchhhhhhhhccccccchhhccCCCCCCccccCCCccCccccC-cccc-CCcchhhccc
Confidence 5899999999999998888889999999999999999999999999976 99999999988876 5565 8889999999
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 024294 112 VIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRD 191 (269)
Q Consensus 112 vl~~s~~~~e~~g~~~~~~~~~~~~~~~~~~~~ls~~i~~l~~lFdILS~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E 191 (269)
+++...+-......|-++...+..+.-..+..+++.++++++++|+|+|++++||||+|.||+|.|++.|+++++.++.|
T Consensus 79 ~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e 158 (447)
T KOG2751|consen 79 VVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDE 158 (447)
T ss_pred eecccCcccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988765555555544444444445567778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 024294 192 IEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFFNIY 269 (269)
Q Consensus 192 ~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre~~ 269 (269)
+++|.+||+.|+.+..+ .+++++++|++.++.||.+|.++|++++++.+.++.+|..++.+..++.++|.+||++||
T Consensus 159 ~~~Y~~~l~~Le~~~~~-~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~ 235 (447)
T KOG2751|consen 159 VDTYKACLQRLEQQNQD-VSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYN 235 (447)
T ss_pred HHHHHHHHHHHhhcCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987654 489999999999999999999999999999999999999999999999999999999996
No 2
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=99.76 E-value=1.2e-18 Score=163.73 Aligned_cols=101 Identities=34% Similarity=0.580 Sum_probs=55.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 168 PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (269)
Q Consensus 168 PLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL 247 (269)
|||.||++.|+++|+.+++.+++|+++|..||++++.......+..++.+++.+|++||+++.++|++||++++++++||
T Consensus 1 PlC~eC~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 1 PLCQECTDLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQEL 80 (314)
T ss_dssp -----------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999853332346788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 024294 248 KELELKSKRFKELEERYFFNI 268 (269)
Q Consensus 248 ~~le~E~~~Ld~eEe~yWre~ 268 (269)
.+++.+.++|+++|++||++|
T Consensus 81 ~~le~e~~~l~~eE~~~~~~~ 101 (314)
T PF04111_consen 81 EELEEELEELDEEEEEYWREY 101 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986
No 3
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=97.22 E-value=0.002 Score=63.64 Aligned_cols=122 Identities=10% Similarity=-0.040 Sum_probs=80.5
Q ss_pred CCChhhhHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH----HHHhcccc
Q 024294 142 NSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYE----------ACL----QRLEGEAR 207 (269)
Q Consensus 142 ~~~ls~~i~~l~~lFdILS~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~----------~fL----~~L~~e~~ 207 (269)
..+++.....-...|+..+.++.+|||.|..|...+...+-+=...+....-.|. .|. .++..+..
T Consensus 74 ~~~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~ 153 (447)
T KOG2751|consen 74 QESSVVVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVE 153 (447)
T ss_pred hhccceecccCcccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHH
Confidence 3456666777788999999999999999999999887776555444444433332 222 22222211
Q ss_pred cc----CCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 208 DV----LSEADFLKEKLKI--EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER 263 (269)
Q Consensus 208 ~~----~seeel~~El~~L--e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~ 263 (269)
.. ...+.+...++.- ..++..+..+++.+..+..++-++|+.++++...++.++.+
T Consensus 154 ~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e 215 (447)
T KOG2751|consen 154 DAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKE 215 (447)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 1111122222221 22678899999999999999999999999999888876654
No 4
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.07 E-value=0.14 Score=44.96 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 176 VLSDKLDKEVDDVTRDI------------EAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (269)
Q Consensus 176 ~Lle~Ld~ql~~~~~E~------------d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l 243 (269)
.+-.++...++.+.++| +.-..||+.++.. .+....+..|...|+.+-..|.++++.|+++...+
T Consensus 54 ~VRkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~---~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 54 YVRKQYEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTT---NPSDQALQKENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888887 4567888888754 34567778888888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 024294 244 NAELKELELKSKRFK 258 (269)
Q Consensus 244 ~~EL~~le~E~~~Ld 258 (269)
..++..++++.+.|-
T Consensus 131 ~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 131 RQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888877664
No 5
>PRK11637 AmiB activator; Provisional
Probab=95.44 E-value=0.23 Score=48.52 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDV-LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~-~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
+.++++++.++++++....-++.++....+. .....+..++..+..+-..+.++|..++++...+..+|..++.+...+
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665554432110 123444555566666666666666666666666666666666665555
Q ss_pred HHHHHH
Q 024294 258 KELEER 263 (269)
Q Consensus 258 d~eEe~ 263 (269)
...-.+
T Consensus 123 ~~~l~~ 128 (428)
T PRK11637 123 ERLLAA 128 (428)
T ss_pred HHHHHH
Confidence 444433
No 6
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.97 E-value=0.67 Score=41.91 Aligned_cols=81 Identities=9% Similarity=0.090 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 176 ~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
..+..|++|+..++.+.+.-..=++ ....++++++...+....+|.++.++|.++.+.+..++..++.+..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~---------~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWN---------QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777777777655444221111 1234455666667777777888888888888888888888888888
Q ss_pred HHHHHHHHhh
Q 024294 256 RFKELEERYF 265 (269)
Q Consensus 256 ~Ld~eEe~yW 265 (269)
.++......|
T Consensus 164 ~~~~~~~~~w 173 (206)
T PRK10884 164 DKQRTIIMQW 173 (206)
T ss_pred HHHHHHHHHH
Confidence 8888777766
No 7
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.65 E-value=0.51 Score=43.93 Aligned_cols=106 Identities=20% Similarity=0.296 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcC--------CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--c-cCCHHHHHHH
Q 024294 150 TVLKRAFEIATS--------QTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR--D-VLSEADFLKE 218 (269)
Q Consensus 150 ~~l~~lFdILS~--------~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~--~-~~seeel~~E 218 (269)
+...++|+-|++ +.+|-|-+ +.+|-+|-.-+-+...-++=|+.|+.-.. + ...-+++...
T Consensus 73 eLA~kf~eeLrg~VGhiERmK~PiGHDv---------EhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kek 143 (290)
T COG4026 73 ELAEKFFEELRGMVGHIERMKIPIGHDV---------EHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEK 143 (290)
T ss_pred HHHHHHHHHHHHhhhhhheeccCCCCCc---------cccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 456688888886 34555543 22222222222222234455665553210 0 0122344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY 264 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~y 264 (269)
++.+.+|...|+.+|++++.+.++++..|+.++.|..+|.+.-.+.
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6667777778888888888888888888888888877776654443
No 8
>PF15285 BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB: 3BL2_C 2P1L_H 3DVU_C 2PON_A.
Probab=94.60 E-value=0.012 Score=36.61 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=16.9
Q ss_pred CChhhhHHHHHHHHHHhcCC
Q 024294 143 SGFHSTITVLKRAFEIATSQ 162 (269)
Q Consensus 143 ~~ls~~i~~l~~lFdILS~~ 162 (269)
.++|+++++...+|||+||+
T Consensus 6 e~ls~rlkvtg~lfdimsGq 25 (25)
T PF15285_consen 6 ENLSRRLKVTGDLFDIMSGQ 25 (25)
T ss_dssp HHHHHHHHHHHHHHCCTT--
T ss_pred cccchhheecccccccccCC
Confidence 46999999999999999985
No 9
>PRK11637 AmiB activator; Provisional
Probab=94.07 E-value=0.85 Score=44.62 Aligned_cols=83 Identities=8% Similarity=0.068 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV-LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~-~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
..=++.+++++...+.+......-++.+..+-... .....+..++..++.+...+..+|..++++.+.+.++|..++..
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666555555554432211 13445556666677777777777777777777777776666655
Q ss_pred HHHH
Q 024294 254 SKRF 257 (269)
Q Consensus 254 ~~~L 257 (269)
...+
T Consensus 126 l~~r 129 (428)
T PRK11637 126 LAAQ 129 (428)
T ss_pred HHHH
Confidence 5443
No 10
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.85 E-value=0.97 Score=45.11 Aligned_cols=96 Identities=17% Similarity=0.199 Sum_probs=68.5
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHH
Q 024294 152 LKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEA 231 (269)
Q Consensus 152 l~~lFdILS~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~ 231 (269)
..-++-+|++ -+|.|..| ....++++..+.+|...-..-+..... .-..|++++..++.+-+.+..
T Consensus 15 ~~~~~~~l~~----~~~~~s~s----~~a~~~~l~q~q~ei~~~~~~i~~~~~------~~~kL~~~lk~~e~~i~~~~~ 80 (420)
T COG4942 15 TILLASLLSA----AVLAAAFS----AAADDKQLKQIQKEIAALEKKIREQQD------QRAKLEKQLKSLETEIASLEA 80 (420)
T ss_pred HHHHHHHHHh----cccccchh----HHhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 3345556654 35677777 444457777777766555555444332 345677888888999899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 232 AIEETEKQNAEVNAELKELELKSKRFKELE 261 (269)
Q Consensus 232 eLeeLEkE~~~l~~EL~~le~E~~~Ld~eE 261 (269)
+|.+.+..+.++++.|..++..+..|..++
T Consensus 81 ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 81 QLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999888888888888888888887776
No 11
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=93.47 E-value=0.8 Score=41.35 Aligned_cols=110 Identities=18% Similarity=0.217 Sum_probs=73.9
Q ss_pred CChhhhHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHH
Q 024294 143 SGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKI 222 (269)
Q Consensus 143 ~~ls~~i~~l~~lFdILS~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~L 222 (269)
..+.|.-.++.+| ++|+.-..--.=+..+.-..++..|++++..+.++.+.=...-+.-+ .+...+|..|
T Consensus 111 a~lehq~~R~~NL-eLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q---------~~~~~~L~~L 180 (221)
T PF05700_consen 111 AQLEHQRLRLENL-ELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQ---------EEAGEELRYL 180 (221)
T ss_pred HHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhHHHHHHH
Confidence 3455555556666 56654222222344556666666666666666666665444433332 2345678889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe 262 (269)
+..=..+...--+++.....|++||.+++++..++++..+
T Consensus 181 e~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~~~ 220 (221)
T PF05700_consen 181 EQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKENQQ 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999888876543
No 12
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.45 E-value=0.91 Score=43.26 Aligned_cols=44 Identities=27% Similarity=0.398 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
++.+.+++..|+.|..++.++|..++.+.++++.+....-.+..
T Consensus 59 e~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n 102 (314)
T PF04111_consen 59 EEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYN 102 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666655555444443333
No 13
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.98 E-value=2 Score=39.61 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 174 td~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
.+.+|..+.++.+.+..|+..+..-|+.+.. +...++..+..++.|-.+....+..+..+...+..++..+..+
T Consensus 30 ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~------DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 30 EEKCLEEYRKEMEELLQERMAHVEELRQINQ------DINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666665553 2334455555555555555555555555555555555555544
No 14
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.91 E-value=4.1 Score=35.18 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 174 td~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
....+..+++++++..+........+..++.
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELEKLKE 116 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666555543
No 15
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.85 E-value=1.8 Score=41.07 Aligned_cols=84 Identities=15% Similarity=0.229 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------------------c--c---CCHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR---------------------D--V---LSEADFLKEKLKIEEEERK 228 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~---------------------~--~---~seeel~~El~~Le~EE~~ 228 (269)
+.|.+.|+..++.+..+.......+..+..-.. + . ...+.+..+|..+..+-+.
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~ 227 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEA 227 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777776666665543211 0 0 1123333455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
..++|.+++.++..+..+++++.++..++.
T Consensus 228 ~k~~l~el~~el~~l~~~i~~~~~~k~~l~ 257 (325)
T PF08317_consen 228 KKKELAELQEELEELEEKIEELEEQKQELL 257 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666666655555554443
No 16
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.29 E-value=1.6 Score=40.54 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024294 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e 205 (269)
.|..||.++......++.|..+|++++.+
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e 39 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAE 39 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 35567777777777777777777766554
No 17
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.87 E-value=2.8 Score=38.64 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
++.+|...|..|.....++|..+......|+..|++++.+..+..+
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~ 81 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQE 81 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555444444333
No 18
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.33 E-value=4.2 Score=37.78 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL---SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~---seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
++.|++|+...+.|.+.-..=+++++..-..+. .-.+|..|+..++.....|..+|..+..+.+.+..++..+..+.
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554444444432211111 22444566666666666666666666666666666666665544
Q ss_pred HHH
Q 024294 255 KRF 257 (269)
Q Consensus 255 ~~L 257 (269)
..+
T Consensus 134 ~~~ 136 (239)
T COG1579 134 ERL 136 (239)
T ss_pred HHH
Confidence 443
No 19
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.30 E-value=3.1 Score=34.78 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA 206 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~ 206 (269)
-.+++.|..++...+.|...+..-+.+|....
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r 46 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAER 46 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999998754
No 20
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.92 E-value=3 Score=35.73 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR---DVLSEADFLKEKLKIEEEERKLEAAIEETEKQ 239 (269)
Q Consensus 170 C~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~---~~~seeel~~El~~Le~EE~~L~~eLeeLEkE 239 (269)
+..|+.-=+..|+.++..+..+........+.|+.+-. ..++.+++...+..|+.+-..+...|..|...
T Consensus 66 ~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 66 LEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44455555556666666655555555555555443321 24788899999999999999999999888864
No 21
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.15 E-value=2.1 Score=42.56 Aligned_cols=12 Identities=17% Similarity=0.645 Sum_probs=7.1
Q ss_pred CCcchHHHHHHH
Q 024294 166 EQPLCLECMRVL 177 (269)
Q Consensus 166 DhPLC~ECtd~L 177 (269)
.+..|.-|...+
T Consensus 283 ~~~~Cp~C~~~~ 294 (562)
T PHA02562 283 KGGVCPTCTQQI 294 (562)
T ss_pred CCCCCCCCCCcC
Confidence 356777775444
No 22
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.51 E-value=13 Score=33.61 Aligned_cols=37 Identities=14% Similarity=0.321 Sum_probs=30.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 166 EQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRL 202 (269)
Q Consensus 166 DhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L 202 (269)
-...|..|+..=+-.+...+..+..+++....=+..+
T Consensus 10 ~~~~C~~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 10 RRFYCANCVNNRLLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred CCeECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999998877755544
No 23
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=89.29 E-value=11 Score=33.48 Aligned_cols=92 Identities=20% Similarity=0.303 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc----ccccCCHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRL---EGE----ARDVLSEADFLKEKLKIEEEERK----------LEAAIEETE 237 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L---~~e----~~~~~seeel~~El~~Le~EE~~----------L~~eLeeLE 237 (269)
..|+..|+.++.+-.+-|..+..-+..- ... ..+.....++..-+.+|++|..+ |...|+..-
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~ 94 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQAR 94 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3578889999888888888777777311 000 00111123344445555554433 666777778
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHhhh
Q 024294 238 KQNAEVNAELKELELKSKR----FKELEERYFF 266 (269)
Q Consensus 238 kE~~~l~~EL~~le~E~~~----Ld~eEe~yWr 266 (269)
.....|..+|..+..+... |...|..||.
T Consensus 95 ~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ 127 (182)
T PF15035_consen 95 KANEALQEDLQKLTQDWERLRDELEQKEAEWRE 127 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887766655 4444444443
No 24
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=89.04 E-value=5.8 Score=39.83 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHhccc---------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEA---CLQRLEGEA---------RDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~---fL~~L~~e~---------~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~ 245 (269)
|+.++.++..++.++++... ||+.+.... ....+.+++.+-+..+.++-.++..++.+++++++++++
T Consensus 80 l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (525)
T TIGR02231 80 IRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEK 159 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444 444443211 012255666666777777888888888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 024294 246 ELKELELKSKRFKE 259 (269)
Q Consensus 246 EL~~le~E~~~Ld~ 259 (269)
+|..++.+...+..
T Consensus 160 ~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 160 QLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHhhcc
Confidence 88888888777653
No 25
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=88.94 E-value=6.6 Score=37.19 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=22.0
Q ss_pred hhhhHHHHHHHH----HHhcC---CCCCCCcchHHHHHHHHHHHHH
Q 024294 145 FHSTITVLKRAF----EIATS---QTQVEQPLCLECMRVLSDKLDK 183 (269)
Q Consensus 145 ls~~i~~l~~lF----dILS~---~s~IDhPLC~ECtd~Lle~Ld~ 183 (269)
..+.+..+..|| ||.++ ++..=.-.+.+|-=.++..|+.
T Consensus 95 k~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~ 140 (269)
T PF05278_consen 95 KPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQS 140 (269)
T ss_pred cHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhc
Confidence 345556666777 45544 2333334466776667777755
No 26
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=88.83 E-value=4.6 Score=40.71 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 024294 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETE----KQNAEVNAELKELELKSK 255 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLE----kE~~~l~~EL~~le~E~~ 255 (269)
.+...++.++.|...|+.+|.+-+++. ..++.++.+||...+.++..+. .+.++-++--+.+.+...
T Consensus 250 ~~~~hi~~l~~EveRlrt~l~~Aqk~~---------~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEses 320 (552)
T KOG2129|consen 250 AEKLHIDKLQAEVERLRTYLSRAQKSY---------QEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESES 320 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 455667777888888999998776643 2344445555544444443332 222333333345566667
Q ss_pred HHHHHHHHhhhhc
Q 024294 256 RFKELEERYFFNI 268 (269)
Q Consensus 256 ~Ld~eEe~yWre~ 268 (269)
-|+-.|++|+.+|
T Consensus 321 slemdeery~Ne~ 333 (552)
T KOG2129|consen 321 SLEMDEERYLNEF 333 (552)
T ss_pred HHHHHHHHHHhhh
Confidence 8888999999887
No 27
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.63 E-value=4.7 Score=40.05 Aligned_cols=85 Identities=20% Similarity=0.313 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV-------NAELKEL 250 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l-------~~EL~~l 250 (269)
++.++.++.....+.+.|..++..++.... ...+++++++..+..+-..+..++..++.+...+ ++.|..+
T Consensus 183 i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~--~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l 260 (562)
T PHA02562 183 IQTLDMKIDHIQQQIKTYNKNIEEQRKKNG--ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKL 260 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 334455555555566666666666654322 2344555555555444444444444444443333 3344445
Q ss_pred HHHHHHHHHHHHHh
Q 024294 251 ELKSKRFKELEERY 264 (269)
Q Consensus 251 e~E~~~Ld~eEe~y 264 (269)
+.+...++..-..+
T Consensus 261 ~~~~~~~~~~l~~~ 274 (562)
T PHA02562 261 NTAAAKIKSKIEQF 274 (562)
T ss_pred HHHHHHHHHHHHHH
Confidence 55554444443333
No 28
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.17 E-value=8.6 Score=42.52 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=27.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024294 217 KEKLKIEEEE-RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFF 266 (269)
Q Consensus 217 ~El~~Le~EE-~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWr 266 (269)
+.+..++++. ..+..++.+++.+.+.|..|++.++.....|.++.+.+-.
T Consensus 379 k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~ 429 (1074)
T KOG0250|consen 379 KQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKE 429 (1074)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 4444555555555666666666666655566555555443
No 29
>PRK03918 chromosome segregation protein; Provisional
Probab=88.03 E-value=6.1 Score=41.56 Aligned_cols=16 Identities=6% Similarity=0.366 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 024294 177 LSDKLDKEVDDVTRDI 192 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~ 192 (269)
++..++.++..+....
T Consensus 170 ~~~~~~~~~~~l~~~l 185 (880)
T PRK03918 170 VIKEIKRRIERLEKFI 185 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 30
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=87.94 E-value=7.7 Score=37.54 Aligned_cols=87 Identities=16% Similarity=0.272 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV------LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (269)
Q Consensus 174 td~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~------~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL 247 (269)
...-++.|.++|.++..|++.++.=+.+.+...... ..-+++..+++++.+.-..|...+..+-.|++++..|.
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ER 163 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTER 163 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577899999999999999998888765543221 23466677888888888888888888889999999999
Q ss_pred HHHHHHHHHHHHH
Q 024294 248 KELELKSKRFKEL 260 (269)
Q Consensus 248 ~~le~E~~~Ld~e 260 (269)
.....+..+|..|
T Consensus 164 D~yk~K~~RLN~E 176 (319)
T PF09789_consen 164 DAYKCKAHRLNHE 176 (319)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888888765
No 31
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.82 E-value=3 Score=38.94 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
++|.+++..|+.+-.....+|+.|+.++..+++.++.+.-+...|
T Consensus 152 eeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 152 EELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 445566666666666666666666666666666666555444333
No 32
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=87.41 E-value=11 Score=33.39 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 180 KLDKEVDDVTRDIEAYEACLQRL 202 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d~Y~~fL~~L 202 (269)
.++.+++.+.++.+....-+..|
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l 88 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEEL 88 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 33
>PRK04863 mukB cell division protein MukB; Provisional
Probab=87.23 E-value=6.9 Score=44.82 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 177 LSDKLDKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
++.++..++..++++...+..|+....
T Consensus 315 iL~ELe~rL~kLEkQaEkA~kyleL~e 341 (1486)
T PRK04863 315 ELAELNEAESDLEQDYQAASDHLNLVQ 341 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348899999999999999999887543
No 34
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.90 E-value=12 Score=35.93 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------------------c--cCC---HHHHHHHHHHHHHHHH
Q 024294 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR---------------------D--VLS---EADFLKEKLKIEEEER 227 (269)
Q Consensus 174 td~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~---------------------~--~~s---eeel~~El~~Le~EE~ 227 (269)
.+.|.+.|+..++.++.|...-...+..+..-.. + .-+ ...+..++..+..+-.
T Consensus 142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~ 221 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIM 221 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777665555444432110 0 001 1222234444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 228 KLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
....+|.+++.++.++...|++..++..++.
T Consensus 222 ~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~ 252 (312)
T smart00787 222 IKVKKLEELEEELQELESKIEDLTNKKSELN 252 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666665555554443
No 35
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=86.82 E-value=5.7 Score=29.60 Aligned_cols=45 Identities=22% Similarity=0.418 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
.+..||.+.+..--.+...|++.++...++..+|..|+.+.+++.
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345567777777777778888888888888888888887776654
No 36
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.54 E-value=16 Score=33.14 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
++.++.++..+..+.+.-..=++.- .+...+.+.+|+++-++|.++|..+.++...+++++..++...
T Consensus 102 l~~l~~~l~~~~~~~~~~~~~l~~~---------~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 102 VKTLTDKLNNIDNTWNQRTAEMQQK---------VAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666776666655444433321 1223444555777777777788888888877777777777544
No 37
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=86.35 E-value=22 Score=31.40 Aligned_cols=109 Identities=22% Similarity=0.381 Sum_probs=62.9
Q ss_pred HHHHHHHhcCC-----CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------------cC
Q 024294 152 LKRAFEIATSQ-----TQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARD----------------VL 210 (269)
Q Consensus 152 l~~lFdILS~~-----s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~----------------~~ 210 (269)
+++||+|+.++ ..+.-|- .=.+..|..|+..|..+....-....--++++..-.. ..
T Consensus 3 f~Rl~~~~~a~~~~~ld~~EDP~--~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~ 80 (221)
T PF04012_consen 3 FKRLKTLVKANINELLDKAEDPE--KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAA 80 (221)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555432 2355576 6667777778888777777666655555555433110 00
Q ss_pred CHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 211 SEADF----LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (269)
Q Consensus 211 seeel----~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe 262 (269)
..++| ..++..++.+-..+.+.+..+......+...|..++.+...+...-.
T Consensus 81 g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 81 GREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 23445566666666777777777777777777777776666665543
No 38
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.18 E-value=19 Score=30.96 Aligned_cols=27 Identities=15% Similarity=0.432 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
+...++++..+.+|.+....++..+..
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~ 109 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELES 109 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666655555543
No 39
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=85.94 E-value=17 Score=29.42 Aligned_cols=41 Identities=12% Similarity=0.210 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe 262 (269)
|..........|..++.+.+.....+.....+.+.++..-+
T Consensus 73 l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~e 113 (141)
T TIGR02473 73 LDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEKLKE 113 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444333
No 40
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=85.78 E-value=16 Score=31.36 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
..+..++..+..+-+.|..+|..+-.++..|..++...+.+...|+..
T Consensus 55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 55 ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666666666666666666666666666665543
No 41
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=85.30 E-value=3.2 Score=32.73 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhhhc
Q 024294 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE--RYFFNI 268 (269)
Q Consensus 216 ~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe--~yWre~ 268 (269)
.+-++.|++|...|.+.|+.+|++++=...+|..+++....|-.-.. .||.|+
T Consensus 6 lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~Lg~~~~~~~~~~d~ 60 (84)
T PF11414_consen 6 LKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHLGRNGTQFDFQMDL 60 (84)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------HHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCccccc
Confidence 45677899999999999999999999999999999999998888777 777764
No 42
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.24 E-value=7.5 Score=32.47 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
+.+...+..++.|-..+..+|..+++++..+.+||-.+-.+...+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666666666666666666665555444
No 43
>PRK03918 chromosome segregation protein; Provisional
Probab=84.88 E-value=11 Score=39.72 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQR 201 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~ 201 (269)
+.+......+......+...+..
T Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~~ 187 (880)
T PRK03918 165 KNLGEVIKEIKRRIERLEKFIKR 187 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 44
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=84.27 E-value=11 Score=37.23 Aligned_cols=78 Identities=15% Similarity=0.312 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 173 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 173 Ctd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
-....++.|..++.....+.......|..+...........+..+.+.++.+.-..+.++|++++.+...+.+++...
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566777777777777777777777766653221112344455566666666666666666666666666665544
No 45
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=83.28 E-value=15 Score=27.80 Aligned_cols=32 Identities=25% Similarity=0.229 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA 206 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~ 206 (269)
+..+..|..+++.+.+....|..-++.|..+.
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ER 35 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRER 35 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999998888887653
No 46
>PRK09039 hypothetical protein; Validated
Probab=82.60 E-value=23 Score=34.24 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----------------------ccCCHHHHHHHHHHHHHHHHHHHH
Q 024294 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR----------------------DVLSEADFLKEKLKIEEEERKLEA 231 (269)
Q Consensus 174 td~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~----------------------~~~seeel~~El~~Le~EE~~L~~ 231 (269)
.+.-+..|..+++.++.+|..=...+........ ..+...-|..++..|+.+-+.+..
T Consensus 79 l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~ 158 (343)
T PRK09039 79 LQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEA 158 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777655544332211000 012234444555555555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 232 AIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 232 eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
+|..+|+..++...+|..++.+....
T Consensus 159 ~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 159 ALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665555544
No 47
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=82.39 E-value=9.2 Score=35.76 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFFN 267 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre 267 (269)
..++...+-+..+.+....+..|++|.+.+..++.+++.+...|.....+||..
T Consensus 205 A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~ 258 (269)
T KOG3119|consen 205 AVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKP 258 (269)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344444455556677778899999999999999999999999999999999975
No 48
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.22 E-value=29 Score=31.58 Aligned_cols=44 Identities=32% Similarity=0.370 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
+..++..|+.|...|....+.+++..+..++++..++.+.+.++
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444333
No 49
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=82.15 E-value=32 Score=29.69 Aligned_cols=87 Identities=17% Similarity=0.293 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cc--cc----------------------------CCHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE---AR--DV----------------------------LSEADFLKEKLK 221 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e---~~--~~----------------------------~seeel~~El~~ 221 (269)
+..++.|+.++..++.-+..+..+++.|+.- .. +. --+.++.+.+..
T Consensus 19 ~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~ 98 (145)
T COG1730 19 QSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEF 98 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHHHH
Confidence 3467778888777777777777776655431 10 10 012344445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eE 261 (269)
|++....|...++.++...+++...+..++.+.+++.+.+
T Consensus 99 l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 99 LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666666666666666666666555544
No 50
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=81.80 E-value=22 Score=38.08 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 024294 180 KLDKEVDDVTRDI 192 (269)
Q Consensus 180 ~Ld~ql~~~~~E~ 192 (269)
.+..++..++.+.
T Consensus 354 ~~~~~l~~~~~~~ 366 (1164)
T TIGR02169 354 KLTEEYAELKEEL 366 (1164)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444433333
No 51
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=81.51 E-value=29 Score=28.71 Aligned_cols=86 Identities=15% Similarity=0.283 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---c----------------c--------------CCHHHHHHHHHHH
Q 024294 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR---D----------------V--------------LSEADFLKEKLKI 222 (269)
Q Consensus 176 ~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~---~----------------~--------------~seeel~~El~~L 222 (269)
..++.|..++..+......|...+..|+.-.. . + --+..+.+.+..|
T Consensus 20 ~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l 99 (140)
T PRK03947 20 AQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEIL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEEecHHHHHHHH
Confidence 34667777777777777778777765543210 0 0 0012455556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eE 261 (269)
+.....+...++.++++...+..++..+.....++..+.
T Consensus 100 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 100 DKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777777777777777777766554
No 52
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=81.23 E-value=24 Score=37.86 Aligned_cols=20 Identities=15% Similarity=0.415 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEA 197 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~ 197 (269)
+..+..++..++.+......
T Consensus 260 l~~~~~~~~~~~~~~~~~~~ 279 (1164)
T TIGR02169 260 ISELEKRLEEIEQLLEELNK 279 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 53
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=81.09 E-value=24 Score=31.15 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024294 211 SEADFLKEKLKIEE---EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFFNI 268 (269)
Q Consensus 211 seeel~~El~~Le~---EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre~ 268 (269)
+.++.-.=|+.|+. ....+..+.+.++.+.+++..+++.|+.|...|.++=..|-.||
T Consensus 81 tl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 81 TLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred CHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433444433 35556666777777777777777777777777766554444443
No 54
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=81.07 E-value=21 Score=39.71 Aligned_cols=41 Identities=34% Similarity=0.518 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
+..++.+...+...|..++.++..++.+|..++.+..++..
T Consensus 865 l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~ 905 (1163)
T COG1196 865 LEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555554444443
No 55
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=81.00 E-value=42 Score=30.44 Aligned_cols=49 Identities=24% Similarity=0.286 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
.+++...+..|+++-+.|..+.+.+|+|...|-++|..|+++...+..+
T Consensus 69 ledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e 117 (193)
T PF14662_consen 69 LEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAE 117 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 4555555666777777777777777777777777777777766655443
No 56
>PRK01156 chromosome segregation protein; Provisional
Probab=80.95 E-value=11 Score=40.23 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=12.7
Q ss_pred CcchHHHHHHHHHHHHHHH
Q 024294 167 QPLCLECMRVLSDKLDKEV 185 (269)
Q Consensus 167 hPLC~ECtd~Lle~Ld~ql 185 (269)
.|+|.-|-+-+-+.+..++
T Consensus 452 ~~~Cp~c~~~~~~e~~~e~ 470 (895)
T PRK01156 452 QSVCPVCGTTLGEEKSNHI 470 (895)
T ss_pred CCCCCCCCCcCChhhHHHH
Confidence 7999999665555544444
No 57
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=80.91 E-value=28 Score=35.61 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY 264 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~y 264 (269)
|.+.+..|....+.|++....|+...+.++...+.|++.++++
T Consensus 85 L~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~ 127 (514)
T TIGR03319 85 LLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEEL 127 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444444433
No 58
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=80.90 E-value=34 Score=29.10 Aligned_cols=84 Identities=17% Similarity=0.244 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV----LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 176 ~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~----~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
.=|..|+.++..++.+.+.+...|..+....... ..-+.|...+..|+++-......|..+......++.....++
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~e 114 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFE 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3466788888888888888888888775432211 123456666666777666666666666655555555555555
Q ss_pred HHHHHHHH
Q 024294 252 LKSKRFKE 259 (269)
Q Consensus 252 ~E~~~Ld~ 259 (269)
.....|+.
T Consensus 115 Rkv~~le~ 122 (143)
T PF12718_consen 115 RKVKALEQ 122 (143)
T ss_pred HHHHHHHh
Confidence 55444443
No 59
>PRK12704 phosphodiesterase; Provisional
Probab=80.81 E-value=27 Score=35.76 Aligned_cols=16 Identities=31% Similarity=0.491 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVN 244 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~ 244 (269)
|.++.+.|++...+|+
T Consensus 98 Le~r~e~Lekke~eL~ 113 (520)
T PRK12704 98 LDRKLELLEKREEELE 113 (520)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 60
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=80.65 E-value=27 Score=35.96 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhccccccCCHHHHHHH----HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 192 IEAYEACLQRLEGEARDVLSEADFLKE----KLKIEEEERKLEAAIEETE---KQNAEVNAELKELELKSKRFKELEERY 264 (269)
Q Consensus 192 ~d~Y~~fL~~L~~e~~~~~seeel~~E----l~~Le~EE~~L~~eLeeLE---kE~~~l~~EL~~le~E~~~Ld~eEe~y 264 (269)
++.|..||+ .+....+.+++|..- ...+-.+-++|..++++|+ ++-.++.+-++.++++.+.|...+..|
T Consensus 238 ~~~Y~~fl~---~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~ 314 (622)
T COG5185 238 TESYKSFLK---LEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKY 314 (622)
T ss_pred HHHHHHHhc---CCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 578899987 332234566666532 2224445555555555444 555667888888888888888888877
Q ss_pred h
Q 024294 265 F 265 (269)
Q Consensus 265 W 265 (269)
-
T Consensus 315 ~ 315 (622)
T COG5185 315 E 315 (622)
T ss_pred H
Confidence 4
No 61
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.54 E-value=41 Score=31.98 Aligned_cols=37 Identities=43% Similarity=0.468 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
+.+++..++.+-..+..+++++..++.++.++|.+++
T Consensus 228 ~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 228 KKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555444
No 62
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=80.50 E-value=8.1 Score=41.24 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=13.7
Q ss_pred ceecccCCccee----eeccccch
Q 024294 21 RWVCQNCRHFLC----IVGVDSYA 40 (269)
Q Consensus 21 ~~~Cq~C~~~l~----i~g~d~~~ 40 (269)
.+...+-+|||. +|..|..+
T Consensus 295 ~i~l~~~rhPll~~~~~vp~di~l 318 (771)
T TIGR01069 295 KIILENARHPLLKEPKVVPFTLNL 318 (771)
T ss_pred CEEEccccCceecCCceEeceeEe
Confidence 577888888876 45555554
No 63
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.31 E-value=30 Score=34.81 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
+.=+++++++++..+++...=..-..+|+. ...+++.++..++.+-.+....|.++++..+.++..|.+++.+.
T Consensus 37 ~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~------~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 37 DKQLKQIQKEIAALEKKIREQQDQRAKLEK------QLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 355677777777777777776666666654 24556666666777766677777777777777777777776555
No 64
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=79.93 E-value=32 Score=36.65 Aligned_cols=20 Identities=20% Similarity=0.528 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEAC 198 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~f 198 (269)
..++.++..+.++......|
T Consensus 189 ~el~~ql~~L~~q~~~a~~~ 208 (1179)
T TIGR02168 189 DRLEDILNELERQLKSLERQ 208 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 65
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=79.29 E-value=18 Score=37.97 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 224 EEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 224 ~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
+.|..|..+++.|.++++.+..++.+....
T Consensus 80 e~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ 109 (617)
T PF15070_consen 80 EVEQQLQAEAEHLRKELESLEEQLQAQVEN 109 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666667777777766665433
No 66
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=79.20 E-value=36 Score=30.98 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
++..|+..-+.+...+..++++.+++..++..++
T Consensus 64 e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 64 EIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 67
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=79.11 E-value=9.8 Score=40.68 Aligned_cols=52 Identities=31% Similarity=0.326 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFF 266 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWr 266 (269)
+.+-+.+|++++..+.++.+++++.+++++...++++++.+.|+++.++.|.
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~ 569 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE 569 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555566666666666666655555666555555555555443
No 68
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=78.98 E-value=36 Score=28.21 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024294 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFF 266 (269)
Q Consensus 221 ~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWr 266 (269)
.|..........|..++.+.+.....+.+...+.+.|+..-++.+.
T Consensus 75 ~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek~~~ 120 (147)
T PRK05689 75 QLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEALETLQERYQT 120 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444433
No 69
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.86 E-value=39 Score=35.05 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
.+.+++..++.+-.++..++..++.+...+..++..++.+...+..
T Consensus 425 ~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (650)
T TIGR03185 425 QLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTK 470 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555666555555555555555555544433
No 70
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=78.58 E-value=35 Score=29.73 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 224 ~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
++.+.+.+|+++++++.++.+.++++++.+.+.|.+
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444445555555555555555555555554443
No 71
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=78.44 E-value=43 Score=28.79 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 024294 183 KEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 183 ~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
.+|..++++.+....-...|+
T Consensus 10 ~kLK~~~~e~dsle~~v~~LE 30 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLE 30 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHH
Confidence 344444444444444444443
No 72
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.96 E-value=26 Score=35.67 Aligned_cols=7 Identities=57% Similarity=0.691 Sum_probs=4.1
Q ss_pred CCCCCce
Q 024294 67 TRMDNSF 73 (269)
Q Consensus 67 ~~md~s~ 73 (269)
.|||.|.
T Consensus 183 ERMD~s~ 189 (493)
T KOG0804|consen 183 ERMDSST 189 (493)
T ss_pred hhcCccc
Confidence 4666655
No 73
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=77.88 E-value=24 Score=39.19 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 024294 243 VNAELKELELKSKRFKELEERYFF 266 (269)
Q Consensus 243 l~~EL~~le~E~~~Ld~eEe~yWr 266 (269)
++.++..+++..+.+...=...|+
T Consensus 444 ~~~~~~~l~~~~~~~~~~~~~~~~ 467 (1163)
T COG1196 444 LNEELEELEEQLEELRDRLKELER 467 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 74
>PRK02224 chromosome segregation protein; Provisional
Probab=77.87 E-value=30 Score=36.65 Aligned_cols=51 Identities=24% Similarity=0.391 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER 263 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~ 263 (269)
+.+..++..+......+...|..++.++..+..+|..++.+.+.++..+++
T Consensus 649 e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~e~~~~~~~~ 699 (880)
T PRK02224 649 EEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRER 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666777777777777777777777777777777666665544443
No 75
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=77.85 E-value=41 Score=28.29 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc-------ccC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRLEGEAR-------DVL---------SEADFLKEKLKIEEEERKLEAAIEETEKQNAE 242 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~-------~~~---------seeel~~El~~Le~EE~~L~~eLeeLEkE~~~ 242 (269)
..|+.++..+.-.++.+..-|+.++.... +.+ =.....+-...|++....|.-+++.|+++...
T Consensus 16 QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~ 95 (119)
T COG1382 16 QQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEK 95 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777765543211 100 00111233555777777788888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 024294 243 VNAELKELELKSKRF 257 (269)
Q Consensus 243 l~~EL~~le~E~~~L 257 (269)
+..++++++.+....
T Consensus 96 l~e~l~eLq~~i~~~ 110 (119)
T COG1382 96 LQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888776643
No 76
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=77.74 E-value=34 Score=30.59 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 236 TEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 236 LEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
+..+.++.+.+|.+++.....++++
T Consensus 150 ~~~~ke~~~~ei~~lks~~~~l~~~ 174 (190)
T PF05266_consen 150 LKEKKEAKDKEISRLKSEAEALKEE 174 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555666665555555443
No 77
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.29 E-value=79 Score=31.25 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQN 240 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~ 240 (269)
++..=.++|+.++.+|++++..|.++.
T Consensus 243 eL~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 243 ELNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 333344445555444444444444433
No 78
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=76.86 E-value=33 Score=32.48 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
+..|...+++-+.|-.+..+.|+.|.+-+=+--.|-+.+|+|++.|
T Consensus 192 e~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 192 EANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666666654444444444444444433
No 79
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=76.57 E-value=14 Score=29.96 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 211 seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
+..+|...|+..++|-.-+.+.|.++|.+...+..||.++..+.
T Consensus 2 ~~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 2 DSAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777777777777777778888888888888887776543
No 80
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=76.50 E-value=33 Score=33.59 Aligned_cols=15 Identities=7% Similarity=0.177 Sum_probs=11.0
Q ss_pred CcceecccCCcceee
Q 024294 19 VPRWVCQNCRHFLCI 33 (269)
Q Consensus 19 ~~~~~Cq~C~~~l~i 33 (269)
+-.|.++-|.+++.-
T Consensus 48 L~~WL~~~~g~~f~~ 62 (359)
T PF10498_consen 48 LCAWLISKAGRKFEQ 62 (359)
T ss_pred HHHHHHHhcCCCCCC
Confidence 456888888877764
No 81
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.49 E-value=26 Score=36.46 Aligned_cols=30 Identities=10% Similarity=0.324 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024294 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (269)
Q Consensus 176 ~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e 205 (269)
.=++-|.+....++.+..-|.+|+..++..
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k 288 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQMKSK 288 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 345667777888888999999998877654
No 82
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=76.39 E-value=10 Score=38.52 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
|+++|..|+.|...+.+.++.+++..++++.|++.|+.+
T Consensus 81 LEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 81 MQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 444444443333333333333333333344444444333
No 83
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=76.38 E-value=33 Score=26.38 Aligned_cols=75 Identities=28% Similarity=0.365 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDV------------LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~------------~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~ 245 (269)
+..+..++..++.+.+.+..-++.|..-..+. .+.++ -+..|+.....+..+++.+++....+..
T Consensus 14 l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~---~~~~L~~~~~~~~~~i~~l~~~~~~l~~ 90 (106)
T PF01920_consen 14 LQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEE---AIEELEERIEKLEKEIKKLEKQLKYLEK 90 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777776543221 12222 3344666666677777777777777777
Q ss_pred HHHHHHHHHH
Q 024294 246 ELKELELKSK 255 (269)
Q Consensus 246 EL~~le~E~~ 255 (269)
++..++....
T Consensus 91 ~l~~~~~~l~ 100 (106)
T PF01920_consen 91 KLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 84
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=76.19 E-value=13 Score=33.93 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 173 CMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (269)
Q Consensus 173 Ctd~Lle~Ld~ql~~~~~E~d~Y~~fL~ 200 (269)
=|+..+ -++.+++..+.+++.|..+|+
T Consensus 130 vT~~y~-D~~arl~~l~~~~~rl~~ll~ 156 (262)
T PF14257_consen 130 VTEQYV-DLEARLKNLEAEEERLLELLE 156 (262)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 344443 356667777777777777766
No 85
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=76.12 E-value=31 Score=30.30 Aligned_cols=45 Identities=22% Similarity=0.246 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe 262 (269)
++..++.+-+.....++.+..|...+..++..++.+...|..|-.
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555555555555555555554433
No 86
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=76.04 E-value=50 Score=33.23 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 024294 243 VNAELKELELKSKRFKELEERYFF 266 (269)
Q Consensus 243 l~~EL~~le~E~~~Ld~eEe~yWr 266 (269)
+.+.+...++...+++++|++.|.
T Consensus 370 ~~~rl~~ie~~~~~l~e~e~~lwf 393 (429)
T PF10037_consen 370 RKERLEEIEKEDKELYEQEQQLWF 393 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888888888899999998885
No 87
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=75.95 E-value=35 Score=29.74 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
++..++++|-+++..+|+..+++.+.+..|.+.+++|
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666666666766777777777776666655
No 88
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=75.83 E-value=50 Score=34.31 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=12.8
Q ss_pred cccCCCCCCCceEEEeccC
Q 024294 99 ASQSGKAMDESFVVIYKSE 117 (269)
Q Consensus 99 ~~~~~~~~~eSfVvl~~s~ 117 (269)
+.-.|++..+=|.|.|.+.
T Consensus 79 ayyLPk~~~e~YqfcYv~~ 97 (546)
T PF07888_consen 79 AYYLPKDDDEFYQFCYVDQ 97 (546)
T ss_pred cccCCCCCCCeEEEEEECC
Confidence 4445566667788888765
No 89
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=75.50 E-value=40 Score=38.33 Aligned_cols=10 Identities=0% Similarity=0.069 Sum_probs=6.3
Q ss_pred HHHHHHHHHh
Q 024294 150 TVLKRAFEIA 159 (269)
Q Consensus 150 ~~l~~lFdIL 159 (269)
.....||..|
T Consensus 180 ~ry~~l~~~l 189 (1353)
T TIGR02680 180 ERYAALLDLL 189 (1353)
T ss_pred HHHHHHHHHH
Confidence 4566666666
No 90
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.26 E-value=32 Score=35.89 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 024294 176 VLSDKLDKEVDD 187 (269)
Q Consensus 176 ~Lle~Ld~ql~~ 187 (269)
-|.-.|.+.+..
T Consensus 221 Elk~~l~~~~~~ 232 (581)
T KOG0995|consen 221 ELKHRLEKYFTS 232 (581)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 91
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=74.97 E-value=38 Score=30.27 Aligned_cols=8 Identities=13% Similarity=-0.159 Sum_probs=5.3
Q ss_pred CCCCCcch
Q 024294 163 TQVEQPLC 170 (269)
Q Consensus 163 s~IDhPLC 170 (269)
-+|-+|.|
T Consensus 86 FnV~~l~~ 93 (190)
T PF05266_consen 86 FNVKFLRS 93 (190)
T ss_pred CccHHHHH
Confidence 66777665
No 92
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=74.91 E-value=42 Score=26.93 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDV---------LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~---------~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~ 248 (269)
+..+..++...+.+..-...-++.|+.-..+. .=..+....+..|+..-..+...++.+++....+...+.
T Consensus 19 ~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~ 98 (110)
T TIGR02338 19 LQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLK 98 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555432211 001112223344555555566667777777777777777
Q ss_pred HHHHHHHHH
Q 024294 249 ELELKSKRF 257 (269)
Q Consensus 249 ~le~E~~~L 257 (269)
.++...+++
T Consensus 99 e~q~~l~~~ 107 (110)
T TIGR02338 99 ELQEKIQEA 107 (110)
T ss_pred HHHHHHHHH
Confidence 777665544
No 93
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=74.87 E-value=49 Score=31.68 Aligned_cols=80 Identities=14% Similarity=0.230 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEAR--------DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~--------~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~ 248 (269)
-+..|...+.++..-++.-..|+++|+.... .+-+.++|.+.|.+.-+.-+-|..||. |++.+...+.
T Consensus 92 q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELd----Eke~llesvq 167 (333)
T KOG1853|consen 92 QESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELD----EKEVLLESVQ 167 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHH
Confidence 3455666666666666666666666654322 123455566555555444444444443 3444555556
Q ss_pred HHHHHHHHHHHH
Q 024294 249 ELELKSKRFKEL 260 (269)
Q Consensus 249 ~le~E~~~Ld~e 260 (269)
.|..|.+.|-++
T Consensus 168 RLkdEardlrqe 179 (333)
T KOG1853|consen 168 RLKDEARDLRQE 179 (333)
T ss_pred HHHHHHHHHHHH
Confidence 666665555544
No 94
>PRK01156 chromosome segregation protein; Provisional
Probab=74.47 E-value=61 Score=34.63 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 024294 170 CLECMRVLSDKLDKEVDDVT 189 (269)
Q Consensus 170 C~ECtd~Lle~Ld~ql~~~~ 189 (269)
|.+.....+..+..++....
T Consensus 167 ~~~~~~~~~~~~~~ei~~le 186 (895)
T PRK01156 167 NYDKLKDVIDMLRAEISNID 186 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555444443
No 95
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=74.40 E-value=36 Score=25.88 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
+..|...-..+..+|..++++.......+.....+.+.++.
T Consensus 54 ~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~ 94 (123)
T PF02050_consen 54 ISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEK 94 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555544444444444444444443
No 96
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=73.46 E-value=15 Score=39.22 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=16.0
Q ss_pred cceecccCCccee----eeccccch
Q 024294 20 PRWVCQNCRHFLC----IVGVDSYA 40 (269)
Q Consensus 20 ~~~~Cq~C~~~l~----i~g~d~~~ 40 (269)
+.+...+-+|||. +|..|.++
T Consensus 299 ~~i~l~~~rHPll~~~~~Vpndi~l 323 (782)
T PRK00409 299 GKIDLRQARHPLLDGEKVVPKDISL 323 (782)
T ss_pred CcEEEcCcCCceeccCceECceeEE
Confidence 3577889999997 67777766
No 97
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=73.21 E-value=57 Score=31.53 Aligned_cols=62 Identities=10% Similarity=0.160 Sum_probs=40.8
Q ss_pred ChhhhHHHHHHHHHHhcCCCCCCCcchHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024294 144 GFHSTITVLKRAFEIATSQTQVEQPLCLECM--------------RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA 206 (269)
Q Consensus 144 ~ls~~i~~l~~lFdILS~~s~IDhPLC~ECt--------------d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~ 206 (269)
-|.|.+..-..|..|.|.-.+ +.-=+..|. -.-++.|++++..++.|...-+.=-.+|..++
T Consensus 115 qLrHeL~~kdeLL~~ys~~~e-e~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et 190 (306)
T PF04849_consen 115 QLRHELSMKDELLQIYSNDDE-ESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTET 190 (306)
T ss_pred HHHHHHHHHHHHHHhcCcHhh-hcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 466777777778888874332 111122232 34589999999999999888777666666443
No 98
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=73.20 E-value=26 Score=27.72 Aligned_cols=81 Identities=22% Similarity=0.387 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc---c----------------cC--------------CHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEAR---D----------------VL--------------SEADFLKEKLKIEE 224 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~---~----------------~~--------------seeel~~El~~Le~ 224 (269)
++.|+.++..+...+..|....+.|+.-.. + .+ -+..+.+.+.-+..
T Consensus 5 l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~~ 84 (120)
T PF02996_consen 5 LENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLKK 84 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHHH
Confidence 567888889998888888887776653211 0 00 12233445555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 225 EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
....+...++.++++...+..++..++...+++.
T Consensus 85 r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 85 RIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666777777777777777777777776666654
No 99
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=73.16 E-value=45 Score=26.44 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
+..|+..-..+..+++.++++...+..++..++.+...+
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556566666677777777777777777777666654
No 100
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=72.74 E-value=43 Score=35.64 Aligned_cols=60 Identities=13% Similarity=0.262 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARD-VLSEADFLKEKLKIEEEERKLEAAIE 234 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~-~~seeel~~El~~Le~EE~~L~~eLe 234 (269)
...+..|..+++.+..|...-+.....|+..-.. ..++..+..+|..++.+-..|...|-
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~ 477 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQ 477 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444578888888888888888777777654210 11233344444444444444433333
No 101
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=72.53 E-value=51 Score=35.11 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 232 AIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 232 eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
...+||.|...|..||+..+++...++.
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~ 573 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELES 573 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554444444
No 102
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=72.51 E-value=55 Score=34.50 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024294 171 LECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (269)
Q Consensus 171 ~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e 205 (269)
.+=+...++.|++|+..++.+-+.-..-|+..+..
T Consensus 262 ~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 262 AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888888888888777776666655543
No 103
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=72.41 E-value=28 Score=37.98 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhc
Q 024294 193 EAYEACLQRLEG 204 (269)
Q Consensus 193 d~Y~~fL~~L~~ 204 (269)
.+|..++++|..
T Consensus 903 ~~~e~~~~~l~s 914 (1259)
T KOG0163|consen 903 KNYEKLVKRLDS 914 (1259)
T ss_pred HHHHHHHHHhhh
Confidence 357777776653
No 104
>PRK09039 hypothetical protein; Validated
Probab=72.35 E-value=66 Score=31.10 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
...|+.++..+..+...-..--.+|+.
T Consensus 76 ~~~l~~~l~~l~~~l~~a~~~r~~Le~ 102 (343)
T PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQA 102 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666655554444443
No 105
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=72.21 E-value=36 Score=33.17 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
+-..|+++...|+-|-.+|+.|-++..++..++..+++...+
T Consensus 257 it~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q 298 (384)
T KOG0972|consen 257 ITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQ 298 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777877777777777777766654443
No 106
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=72.01 E-value=76 Score=29.27 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 024294 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIE----ETEKQNAEVNAELKE 249 (269)
Q Consensus 174 td~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLe----eLEkE~~~l~~EL~~ 249 (269)
.+.=++.|..+++...+.++.|..-+++++... .-+..++..|+..+.+....|+ .+..+...++.++.+
T Consensus 66 ~e~~le~Le~el~~l~~~~~~~~~~~~~lq~~~------~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~ 139 (256)
T PF14932_consen 66 EEEDLEALEEELEALQEYKELYEQLRNKLQQLD------SSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQ 139 (256)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999999999887532 1133344444443333333333 344455556666666
Q ss_pred HHHHHHHHHH
Q 024294 250 LELKSKRFKE 259 (269)
Q Consensus 250 le~E~~~Ld~ 259 (269)
+..+...+-.
T Consensus 140 l~~~v~~l~~ 149 (256)
T PF14932_consen 140 LLGEVSKLAS 149 (256)
T ss_pred HHHHHHHHHH
Confidence 6655555443
No 107
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=71.95 E-value=12 Score=38.20 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELK 248 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~ 248 (269)
+......+.++|++++.+.+.|.++++
T Consensus 95 ~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 95 LNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555543
No 108
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.35 E-value=20 Score=30.71 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=14.1
Q ss_pred HHHHHHhcCCCCCCCcchHHHHHHHHHH
Q 024294 153 KRAFEIATSQTQVEQPLCLECMRVLSDK 180 (269)
Q Consensus 153 ~~lFdILS~~s~IDhPLC~ECtd~Lle~ 180 (269)
+.||+-|-+ .|.-...+-|-|.|.+.
T Consensus 20 ~di~~nL~~--~~~K~~v~k~Ld~L~~~ 45 (169)
T PF07106_consen 20 QDIFDNLHN--KVGKTAVQKALDSLVEE 45 (169)
T ss_pred HHHHHHHHh--hccHHHHHHHHHHHHhC
Confidence 355555533 45555666666666553
No 109
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.35 E-value=86 Score=29.20 Aligned_cols=58 Identities=12% Similarity=0.364 Sum_probs=30.9
Q ss_pred ChhhhHHHHHHHHHHhcC-CCCCCCcc-----hHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 144 GFHSTITVLKRAFEIATS-QTQVEQPL-----CLE-CMRVL---SDKLDKEVDDVTRDIEAYEACLQR 201 (269)
Q Consensus 144 ~ls~~i~~l~~lFdILS~-~s~IDhPL-----C~E-Ctd~L---le~Ld~ql~~~~~E~d~Y~~fL~~ 201 (269)
.++........+|..+|+ ...+.-|| |.+ |+..+ +..|...+...-+|.-.|..-++.
T Consensus 86 ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~ 153 (243)
T cd07666 86 EYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMG 153 (243)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555667788888765 35566665 444 33233 334444455555555555444443
No 110
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=71.29 E-value=69 Score=33.33 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 216 LKEKLKIEEEERKLEAAIEETEKQNAEV 243 (269)
Q Consensus 216 ~~El~~Le~EE~~L~~eLeeLEkE~~~l 243 (269)
.+|...|..+...+.+.+..||.+...+
T Consensus 205 ~~E~~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 205 KEERESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 111
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.24 E-value=66 Score=33.94 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQNA--------------EVNAELKELELKSKRFKELEERYFFNI 268 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~~--------------~l~~EL~~le~E~~~Ld~eEe~yWre~ 268 (269)
..+.+|+.|-+.++++|.....|++ .++.+...+..|.+..+-.|.+...+|
T Consensus 107 ~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseY 172 (772)
T KOG0999|consen 107 QKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEY 172 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444443 344455566677777777777777776
No 112
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=71.01 E-value=53 Score=30.28 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
....+++.+|+.|-++...+|+.+++...++..+.+.+..|..+|-++
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 444556667777777777777777777777777777777777766654
No 113
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=70.82 E-value=88 Score=28.86 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
.....++.+-..+...|...-..+..++.++..|+.+..-+.
T Consensus 96 ~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 96 AERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 344456666666667777766777777777777777666544
No 114
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=70.70 E-value=62 Score=33.56 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 024294 185 VDDVTRDIEAY 195 (269)
Q Consensus 185 l~~~~~E~d~Y 195 (269)
++.+..+...|
T Consensus 184 ~~~L~~dl~~~ 194 (650)
T TIGR03185 184 IDRLAGDLTNV 194 (650)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 115
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=70.69 E-value=26 Score=27.67 Aligned_cols=38 Identities=11% Similarity=0.356 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
.++..+++.|.....+|.++|...+.....++.--..+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Ev 72 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREV 72 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45666677777777777777776666555544433333
No 116
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=70.67 E-value=16 Score=29.52 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~ 252 (269)
..+++++.+.+.+++++++++.++|..|+..++.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4445555566666666666666666666666654
No 117
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=70.46 E-value=64 Score=30.95 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=18.3
Q ss_pred ChhhhHHHHHHHHHHhcCCCCCCCcc
Q 024294 144 GFHSTITVLKRAFEIATSQTQVEQPL 169 (269)
Q Consensus 144 ~ls~~i~~l~~lFdILS~~s~IDhPL 169 (269)
-|..+|.--.++|.=+...+.++.|.
T Consensus 74 EL~~~I~egr~~~~~~E~et~~~nPp 99 (312)
T smart00787 74 ELKKYISEGRDLFKEIEEETLINNPP 99 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcH
Confidence 46666777777777777777777764
No 118
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=70.37 E-value=38 Score=32.84 Aligned_cols=66 Identities=14% Similarity=0.291 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL 247 (269)
|...|.++|..+..|+..-..-|..=+.. -...|...+..|+.+......+|+.|.+++-+++..|
T Consensus 107 ltn~L~rkl~qLr~EK~~lE~~Le~EqE~-----~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~L 172 (310)
T PF09755_consen 107 LTNDLSRKLNQLRQEKVELENQLEQEQEY-----LVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTL 172 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Confidence 44555556666666655433333311100 1122334444444444444444444444444444333
No 119
>PRK09343 prefoldin subunit beta; Provisional
Probab=69.92 E-value=61 Score=26.68 Aligned_cols=40 Identities=28% Similarity=0.357 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
+..|++.-..+..+|+.+++....+...+..++...+++-
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555667777777777777777777777666553
No 120
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=69.24 E-value=67 Score=26.85 Aligned_cols=90 Identities=19% Similarity=0.357 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHH
Q 024294 147 STITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEE 226 (269)
Q Consensus 147 ~~i~~l~~lFdILS~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE 226 (269)
....+++-||++|-.. +. .-...+.|..++.....|...-.....+|+.. .++++.++..++..+
T Consensus 32 ~~~~vin~i~~Ll~~~---~r------~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~------~~~~ere~~~~~~~~ 96 (151)
T PF11559_consen 32 NDVRVINCIYDLLQQR---DR------DMEQREDLSDKLRRLRSDIERLQNDVERLKEQ------LEELERELASAEEKE 96 (151)
T ss_pred cHHHHHHHHHHHHHHH---HH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 4557777788888431 11 12345666667777777777777777777642 344555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 227 RKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 227 ~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
+.+..+++.++........|+..+.
T Consensus 97 ~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 97 RQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555555555544444
No 121
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.08 E-value=51 Score=34.83 Aligned_cols=10 Identities=40% Similarity=0.534 Sum_probs=7.5
Q ss_pred cceeeecccc
Q 024294 29 HFLCIVGVDS 38 (269)
Q Consensus 29 ~~l~i~g~d~ 38 (269)
.++.|||+|-
T Consensus 242 r~~lIVGIDP 251 (652)
T COG2433 242 RRSLIVGIDP 251 (652)
T ss_pred ccceEEEeCC
Confidence 3488999984
No 122
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=68.70 E-value=26 Score=31.92 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
-.+++-++|++..+++.||+.++.+.+.|++
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777666654
No 123
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=68.54 E-value=67 Score=26.62 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024294 182 DKEVDDVTRDIEAYEACL 199 (269)
Q Consensus 182 d~ql~~~~~E~d~Y~~fL 199 (269)
..+|..+...+..|..-+
T Consensus 36 ~~~L~~L~~~~~~~~~~~ 53 (146)
T PRK07720 36 AEKLYELLKQKEDLEQAK 53 (146)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 124
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=68.21 E-value=59 Score=25.84 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 216 ~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
.+.+..++.....+..+++.++++...+..++..++...+++
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 86 EEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666666667777777777777777777777665543
No 125
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=68.06 E-value=71 Score=28.62 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=42.3
Q ss_pred ChhhhHHHHHHHHHHhcCC--CCCCCcc-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 144 GFHSTITVLKRAFEIATSQ--TQVEQPL-------------CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 144 ~ls~~i~~l~~lFdILS~~--s~IDhPL-------------C~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
.+-..+..+++.+..++.. ++|-.|| |.+-...|...+.+.+..+.+-++.|...-+...
T Consensus 69 ~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~ 143 (251)
T cd07653 69 SILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAE 143 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666777777653 4566666 7777777888888888888888888887776543
No 126
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.98 E-value=63 Score=30.66 Aligned_cols=68 Identities=13% Similarity=0.265 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
+..=|.+|..++.+......=++.|..+ .+++..+...++++-.++.++|+.++++.+.+.+.|...+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~q------i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQ------IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777777777766543 3455566666666666666666666666666655555443
No 127
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=67.86 E-value=72 Score=33.20 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRL 202 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L 202 (269)
..++.++..+..|.+.|..-+.+.
T Consensus 109 a~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 109 AKLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345556666666666666555544
No 128
>PRK00106 hypothetical protein; Provisional
Probab=67.75 E-value=1.1e+02 Score=31.73 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
|.+.+..|.+..+.|++...+|+...+.++...+.|++
T Consensus 106 L~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee 143 (535)
T PRK00106 106 LTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDE 143 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555554444444444444433333333
No 129
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.74 E-value=58 Score=33.31 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLK-IEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~-Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
+.+|.+++..+.++.+.-+.--++|++.. ..+...++. +..+..++.++.+.|..++.++...|..|+.++
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~------~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKRE------QSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777766666665432 122222222 445555566666666666666666666665544
No 130
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=67.69 E-value=82 Score=32.79 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNA 245 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~ 245 (269)
.+..++.+...|.++...|..+...+..
T Consensus 163 r~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 163 RIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3444444444444444444444443333
No 131
>PRK11519 tyrosine kinase; Provisional
Probab=67.56 E-value=1.1e+02 Score=32.15 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 173 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 173 Ctd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
=+...++.|++|+..++.+-+.-..-|+..+.
T Consensus 264 ~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 264 EASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777776665555554443
No 132
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=67.39 E-value=55 Score=38.86 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhc
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF-------KELEERYFFNI 268 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L-------d~eEe~yWre~ 268 (269)
++..+.+|+++....+.....+++.+.++..++.++..+.... .+...+.|.+|
T Consensus 1102 L~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~ 1162 (1930)
T KOG0161|consen 1102 LEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEV 1162 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3344444444444445555566677777777777766655543 23335666665
No 133
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=67.22 E-value=88 Score=29.78 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 177 LSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
|+.++-.....--.--+.|+..||.+..
T Consensus 108 Ll~e~ge~e~~~a~~~d~yR~~LK~IR~ 135 (271)
T PF13805_consen 108 LLYEIGELEDQYADRLDQYRIHLKSIRN 135 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444456789999998865
No 134
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=67.02 E-value=94 Score=29.43 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 024294 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLE-------AAIEETEKQNAEVNAE 246 (269)
Q Consensus 174 td~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~-------~eLeeLEkE~~~l~~E 246 (269)
-|.|.-+|++++-.++. -..-+.++.... ..-+...++.|..++++|. +....+-.|+.++.++
T Consensus 159 Gd~l~~eLqkr~~~v~~----l~~q~~k~~~~q-----v~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r 229 (289)
T COG4985 159 GDPLERELQKRLLEVET----LRDQVDKMVEQQ-----VRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKR 229 (289)
T ss_pred CcHHHHHHHHHHHHHHH----HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 46677777777776654 333344444331 2234445555555554442 1233455566666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024294 247 LKELELKSKRFKELEER 263 (269)
Q Consensus 247 L~~le~E~~~Ld~eEe~ 263 (269)
++.++.++..|..+-++
T Consensus 230 ~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 230 LAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHhhhhhh
Confidence 66666666666655554
No 135
>PRK04863 mukB cell division protein MukB; Provisional
Probab=66.74 E-value=74 Score=36.82 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 210 LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 210 ~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
.+.++|+..+.........+..+|.+++.+...+.++++.++.+...+-.
T Consensus 435 ~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~ 484 (1486)
T PRK04863 435 LTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRK 484 (1486)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778887777888888888888888888888888888777776665543
No 136
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=66.64 E-value=74 Score=26.42 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 024294 187 DVTRDIEAYEACLQ 200 (269)
Q Consensus 187 ~~~~E~d~Y~~fL~ 200 (269)
..-.+-+.+..|+.
T Consensus 11 ~Ll~d~~~l~~~v~ 24 (150)
T PF07200_consen 11 ELLSDEEKLDAFVK 24 (150)
T ss_dssp HHHHH-HHHHHHGG
T ss_pred HHHcCHHHHHHHHH
Confidence 33333344444444
No 137
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.62 E-value=1e+02 Score=34.87 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=26.1
Q ss_pred CHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 211 SEADFLKEKLK-------IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY 264 (269)
Q Consensus 211 seeel~~El~~-------Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~y 264 (269)
+.++|...+.. ++.+..++..++..+..++..+..+...+..+...|..+.+.|
T Consensus 299 s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~ 359 (1311)
T TIGR00606 299 TDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRH 359 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556543333 3444444444444444445555555555555555555554444
No 138
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=66.52 E-value=88 Score=31.65 Aligned_cols=42 Identities=14% Similarity=0.366 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
+++..+.+.-..|..+|+.|-.++..++++...+..+.++|.
T Consensus 137 Q~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 137 QELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566666666666666666666665555555554
No 139
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=66.27 E-value=55 Score=33.53 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=35.2
Q ss_pred ChhhhHHHHHHHHHH----hcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 144 GFHSTITVLKRAFEI----ATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRL 202 (269)
Q Consensus 144 ~ls~~i~~l~~lFdI----LS~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L 202 (269)
.+...|..+..-..= |.+ .+++. ..+=.+.+-+.+|.=++..++|..++....+..
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~-l~l~~--~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~ 312 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEE-LDLDE--AEEKNEEIQERIDQLYDILEREVKARKYVEKNS 312 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHh-cChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355566555544333 322 44444 666777777888888888888888876665544
No 140
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=66.26 E-value=99 Score=27.69 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 177 LSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
||..|+.++.+..+--.....-+..+..
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~ 55 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQ 55 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777766666666555555544
No 141
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=66.14 E-value=91 Score=31.93 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (269)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eE 261 (269)
|.+|.+..+.|++..+.|+...+.|+.+.+.|++.+
T Consensus 82 E~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re 117 (514)
T TIGR03319 82 ERRLLQREETLDRKMESLDKKEENLEKKEKELSNKE 117 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444443333333333
No 142
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=65.89 E-value=28 Score=29.88 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
....||.+...|.++|+.|-.|.+.+..|+.+++.+.++|.
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457888888888888888888888888888888777764
No 143
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=65.76 E-value=1.2e+02 Score=28.43 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARD--VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~--~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~ 252 (269)
-.+.+.++.+++.+..-+..|..+|..+...... .....-+..+|-.+.+=|.-+..-+.++..=.+.|+..+.+++.
T Consensus 8 ~~t~~~i~~eL~~~~~l~~~yta~l~~~~~~~~~~~~~~~~~lke~L~n~RQ~e~fLr~ll~dl~~~~~~V~~l~~~~~~ 87 (281)
T PF12018_consen 8 PATTEHIDTELEEAQELCYRYTAVLEKQSQSPQMESELPPELLKEELYNRRQYEIFLRILLSDLITCAQRVEELIKRFEA 87 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999988642211 11123345666666666666666666666555566666666666
Q ss_pred HHHHHH
Q 024294 253 KSKRFK 258 (269)
Q Consensus 253 E~~~Ld 258 (269)
..++|.
T Consensus 88 ~l~~L~ 93 (281)
T PF12018_consen 88 QLEKLK 93 (281)
T ss_pred HHHHHH
Confidence 555554
No 144
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=65.51 E-value=55 Score=30.19 Aligned_cols=37 Identities=32% Similarity=0.517 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
++.+..+|...-...+.++..|..++..++.+..+|.
T Consensus 59 aee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ 95 (246)
T PF00769_consen 59 AEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLE 95 (246)
T ss_dssp HHHHHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555556666666655555443
No 145
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=65.51 E-value=26 Score=32.59 Aligned_cols=6 Identities=33% Similarity=0.672 Sum_probs=3.3
Q ss_pred Hhhhhc
Q 024294 263 RYFFNI 268 (269)
Q Consensus 263 ~yWre~ 268 (269)
+|++.|
T Consensus 131 RylqSY 136 (248)
T PF08172_consen 131 RYLQSY 136 (248)
T ss_pred HHHhhC
Confidence 466555
No 146
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=65.36 E-value=1e+02 Score=32.67 Aligned_cols=7 Identities=29% Similarity=0.923 Sum_probs=3.5
Q ss_pred ccCCCCc
Q 024294 14 SVDPNVP 20 (269)
Q Consensus 14 ~~~~~~~ 20 (269)
|+||-..
T Consensus 248 GIDPGiT 254 (652)
T COG2433 248 GIDPGIT 254 (652)
T ss_pred EeCCCce
Confidence 5555543
No 147
>PRK12704 phosphodiesterase; Provisional
Probab=65.04 E-value=1.1e+02 Score=31.30 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024294 228 KLEAAIEETEKQNAEVNAELKE 249 (269)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~EL~~ 249 (269)
+|.+..+.|++....|+...+.
T Consensus 90 rL~~Ree~Le~r~e~Lekke~e 111 (520)
T PRK12704 90 RLLQKEENLDRKLELLEKREEE 111 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 148
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=64.73 E-value=65 Score=32.40 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 177 LSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
=+..|+++++.++.+......=++.++.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 99 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKA 99 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655554443
No 149
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=64.32 E-value=37 Score=26.58 Aligned_cols=41 Identities=15% Similarity=0.300 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024294 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFFNI 268 (269)
Q Consensus 227 ~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre~ 268 (269)
.+|.+++..|...+..|-..+...+.|...|+. |.+|.++|
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~-EN~~Lq~Y 59 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLES-ENEYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345666666666666666677777766666654 34455554
No 150
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=64.19 E-value=1.5e+02 Score=29.35 Aligned_cols=28 Identities=14% Similarity=0.412 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e 205 (269)
+..++.++..++.+...|...++.++..
T Consensus 174 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 201 (457)
T TIGR01000 174 KAQLDQQISKTDQKLQDYQALKNAISNG 201 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556777777777888887777766553
No 151
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=64.14 E-value=1.1e+02 Score=27.42 Aligned_cols=8 Identities=25% Similarity=0.617 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 024294 188 VTRDIEAY 195 (269)
Q Consensus 188 ~~~E~d~Y 195 (269)
+=.|++.|
T Consensus 10 af~~iK~Y 17 (201)
T PF13851_consen 10 AFQEIKNY 17 (201)
T ss_pred HHHHHHHH
Confidence 33444444
No 152
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=64.00 E-value=58 Score=24.26 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFF 266 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWr 266 (269)
++++++..++..-..+...+..+|+..+..+.+++.+......+..-=.=+|+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666667777777777777777777776666655544444
No 153
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=63.97 E-value=77 Score=25.65 Aligned_cols=81 Identities=21% Similarity=0.310 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------------------------c---------cCCHHHHHHHHHHH
Q 024294 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR------------------------D---------VLSEADFLKEKLKI 222 (269)
Q Consensus 176 ~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~------------------------~---------~~seeel~~El~~L 222 (269)
..++.|.+++..+...+..|...++.|+.-.. + .--+..+.+.+.-+
T Consensus 13 ~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~eA~~~l 92 (129)
T cd00584 13 QEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDLEEAIEFL 92 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecHHHHHHHH
Confidence 45677788888888888888777776643221 0 00123344455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
+.....|...++.++++...+.+++..++...++
T Consensus 93 ~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 93 DKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777777777777777777777665554
No 154
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=63.71 E-value=1.2e+02 Score=33.87 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDV-LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~-~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
...+..+++..+.|.+++..-|+.++..-... ..-..+.+++.+++..-..-..+|+.++.+..++...|+..+.-..+
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~ 522 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQ 522 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444321100 11223334445555554444555555555555555554444443444
Q ss_pred HHHHH
Q 024294 257 FKELE 261 (269)
Q Consensus 257 Ld~eE 261 (269)
++.-|
T Consensus 523 ~~~se 527 (1041)
T KOG0243|consen 523 QEKSE 527 (1041)
T ss_pred HHHHH
Confidence 44333
No 155
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=63.42 E-value=92 Score=26.65 Aligned_cols=73 Identities=26% Similarity=0.357 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc---cC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARD---VL----------SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~---~~----------seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~ 245 (269)
..++..+..+..+++.-..-...+.--+.+ +| +.+ +-..+|++-...+..+|..||.+.+.+.+
T Consensus 33 ~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~---~~~~~LEe~ke~l~k~i~~les~~e~I~~ 109 (131)
T KOG1760|consen 33 DDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLD---KLQDQLEEKKETLEKEIEELESELESISA 109 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777666666543322 11 112 22345788888899999999999999999
Q ss_pred HHHHHHHHH
Q 024294 246 ELKELELKS 254 (269)
Q Consensus 246 EL~~le~E~ 254 (269)
+|.+|..-+
T Consensus 110 ~m~~LK~~L 118 (131)
T KOG1760|consen 110 RMDELKKVL 118 (131)
T ss_pred HHHHHHHHH
Confidence 998887543
No 156
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.87 E-value=88 Score=35.32 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERY 264 (269)
Q Consensus 231 ~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~y 264 (269)
.+++.+..+...++.+|..++++..++...+..|
T Consensus 231 ~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~ 264 (1311)
T TIGR00606 231 AQLESSREIVKSYENELDPLKNRLKEIEHNLSKI 264 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444
No 157
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=62.82 E-value=33 Score=24.12 Aligned_cols=31 Identities=29% Similarity=0.551 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
+..+..+..++..|+.+...|..++..|+.|
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444455666666666666666666666543
No 158
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=62.73 E-value=1.2e+02 Score=33.84 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRL 202 (269)
Q Consensus 170 C~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L 202 (269)
|..|+.. +..|.++.+...++...|..+.+.+
T Consensus 197 ~~~~~~~-l~~L~~~~~~l~kdVE~~rer~~~~ 228 (1072)
T KOG0979|consen 197 LTTKTEK-LNRLEDEIDKLEKDVERVRERERKK 228 (1072)
T ss_pred HHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566654 3566777777777777776666544
No 159
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=62.69 E-value=44 Score=34.61 Aligned_cols=36 Identities=42% Similarity=0.590 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
+.+-.++.+++.++.+++.++++++++++++.++|+
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555566666666666666666665555444
No 160
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=62.63 E-value=96 Score=31.79 Aligned_cols=34 Identities=15% Similarity=0.375 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhc
Q 024294 171 LECMRVLSDKLDKEVDDVTRDIE-----AYEACLQRLEG 204 (269)
Q Consensus 171 ~ECtd~Lle~Ld~ql~~~~~E~d-----~Y~~fL~~L~~ 204 (269)
.|=....+..|.+++++++.|.. .|..|...++.
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~ 47 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQS 47 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666777777777776654 47777776654
No 161
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=62.18 E-value=1.6e+02 Score=30.85 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024294 174 MRVLSDKLDKEVDDVTRDIEA 194 (269)
Q Consensus 174 td~Lle~Ld~ql~~~~~E~d~ 194 (269)
...++..++.++....++.+.
T Consensus 188 Q~qv~qsl~~el~~i~~~~q~ 208 (591)
T KOG2412|consen 188 QNQVLQSLDTELQAIQREKQR 208 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544444444443
No 162
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=62.02 E-value=1.2e+02 Score=27.62 Aligned_cols=89 Identities=7% Similarity=0.115 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL-SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~-seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
...+..|+.+|+......-+-.....+.+......+ ..+++.+++..|++++..+..+|..++...-++-..+.+++.+
T Consensus 80 ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~ 159 (203)
T KOG3433|consen 80 KSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKT 159 (203)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 345677888888777766655554444433222111 2235666666676666666666666655444444444444332
Q ss_pred HHHHHHHHHHhhhh
Q 024294 254 SKRFKELEERYFFN 267 (269)
Q Consensus 254 ~~~Ld~eEe~yWre 267 (269)
-.++..-|.|
T Consensus 160 ----~~eaanrwtD 169 (203)
T KOG3433|consen 160 ----MAEAANRWTD 169 (203)
T ss_pred ----HHHHHhhhhh
Confidence 3345555654
No 163
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=61.90 E-value=71 Score=36.32 Aligned_cols=87 Identities=25% Similarity=0.346 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----Hhccc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQR-----LEGEA-RDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~-----L~~e~-~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
++.++++|+++...+..=..-|++ ++.+- ....-..+..+++++|+.+-+.+..+|+.+++....+...+..+.
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~ 542 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVN 542 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 445555665555555444444443 00000 000122333445666777777777777777777666666666666
Q ss_pred HHHHHHHHHHHHh
Q 024294 252 LKSKRFKELEERY 264 (269)
Q Consensus 252 ~E~~~Ld~eEe~y 264 (269)
...++|+..+..|
T Consensus 543 ~~rk~le~~~~d~ 555 (1317)
T KOG0612|consen 543 SLRKQLEEAELDM 555 (1317)
T ss_pred HHHHHHHHhhhhh
Confidence 6666666554433
No 164
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.83 E-value=68 Score=32.81 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 024294 192 IEAYEACLQ 200 (269)
Q Consensus 192 ~d~Y~~fL~ 200 (269)
+..|..-+.
T Consensus 353 k~~~e~~~~ 361 (493)
T KOG0804|consen 353 KQYYELLIT 361 (493)
T ss_pred HHHHHHHHH
Confidence 333433333
No 165
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=61.72 E-value=1.1e+02 Score=34.42 Aligned_cols=9 Identities=33% Similarity=0.390 Sum_probs=6.3
Q ss_pred ccCCcceee
Q 024294 25 QNCRHFLCI 33 (269)
Q Consensus 25 q~C~~~l~i 33 (269)
=+||-.|.|
T Consensus 50 FMCHsnL~I 58 (1074)
T KOG0250|consen 50 FMCHSNLLI 58 (1074)
T ss_pred eccccccee
Confidence 367777766
No 166
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=60.98 E-value=35 Score=32.84 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=11.0
Q ss_pred CCCCcchHHHHHHHH
Q 024294 164 QVEQPLCLECMRVLS 178 (269)
Q Consensus 164 ~IDhPLC~ECtd~Ll 178 (269)
.--|+||..|.|.|-
T Consensus 22 ~C~H~lCEsCvd~iF 36 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIF 36 (300)
T ss_pred cccchHHHHHHHHHH
Confidence 566888888887764
No 167
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=60.77 E-value=69 Score=33.67 Aligned_cols=52 Identities=15% Similarity=0.318 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY 264 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~y 264 (269)
.+++..+..++.+..+..+-|+.++.++..+...+.+-.+=..+|.+.++.|
T Consensus 125 ~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~F 176 (617)
T PF15070_consen 125 AELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAF 176 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444444444444444455555444444444444444444444444444
No 168
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=60.77 E-value=67 Score=28.49 Aligned_cols=60 Identities=20% Similarity=0.377 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIE 234 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLe 234 (269)
..-++.|+++++.++.++..-..=+........+...-..+.+++..|+.+.+.|..+|+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777776666654433322233334444444444444444444
No 169
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=60.54 E-value=1.6e+02 Score=28.43 Aligned_cols=20 Identities=5% Similarity=0.265 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024294 177 LSDKLDKEVDDVTRDIEAYE 196 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~Y~ 196 (269)
.+..|..++..++.+.....
T Consensus 255 ~i~~l~~~l~~le~~l~~l~ 274 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAELS 274 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777766653
No 170
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=59.82 E-value=1.5e+02 Score=27.45 Aligned_cols=48 Identities=19% Similarity=0.323 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe 262 (269)
+++|...+.++-..|..+|++..++.+..+..-.+++.+.+.++.|=.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eyd 196 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYD 196 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 444555555555555555555555555555555555555555544433
No 171
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.75 E-value=81 Score=24.54 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l 243 (269)
-|+.|+..|++.-..|.++...+...++++
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL 51 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREAL 51 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 334444455444444444444444433333
No 172
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=59.48 E-value=78 Score=33.57 Aligned_cols=94 Identities=18% Similarity=0.260 Sum_probs=51.6
Q ss_pred HHHHHhcCC-----CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHH
Q 024294 154 RAFEIATSQ-----TQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERK 228 (269)
Q Consensus 154 ~lFdILS~~-----s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~ 228 (269)
.+|+-||.- .+||-| +|+| .|-++++.+..|.-....--..|+-- --+|-.....|--|..-
T Consensus 274 sl~eels~aGs~liGdvdeg-----Adll--GMGrEVeNLilENsqLLetKNALNiV------KNDLIakVDeL~~E~~v 340 (832)
T KOG2077|consen 274 SLFEELSSAGSGLIGDVDEG-----ADLL--GMGREVENLILENSQLLETKNALNIV------KNDLIAKVDELTCEKDV 340 (832)
T ss_pred chhhhhhhccccccccccch-----hhhh--cchHHHHHHHHhhHHHHhhhhHHHHH------HHHHHHHHHhhccHHHH
Confidence 566666532 355544 5666 88888888777765544333333221 12233444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
|+-||+...+-...+++.|+++++|++.++.+
T Consensus 341 LrgElea~kqak~Klee~i~elEEElk~~k~e 372 (832)
T KOG2077|consen 341 LRGELEAVKQAKLKLEEKIRELEEELKKAKAE 372 (832)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566655555555555555555555555543
No 173
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=59.38 E-value=1.1e+02 Score=32.91 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDV--------LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~--------~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
..|+.++..+..+...+..=.++|.....+. .....+..+++.++..|.+|++.-.+||.|.-.+..++..|
T Consensus 37 ~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~L 116 (717)
T PF09730_consen 37 LELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVL 116 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444444443321110 01233446777788888888888888887777666665544
Q ss_pred H
Q 024294 251 E 251 (269)
Q Consensus 251 e 251 (269)
.
T Consensus 117 k 117 (717)
T PF09730_consen 117 K 117 (717)
T ss_pred H
Confidence 3
No 174
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=59.37 E-value=1.2e+02 Score=34.15 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024294 211 SEADFLKEKLKIEEEERKLEAAIEETEKQN-------AEVNAELKELELKSKRFKELEERYFFN 267 (269)
Q Consensus 211 seeel~~El~~Le~EE~~L~~eLeeLEkE~-------~~l~~EL~~le~E~~~Ld~eEe~yWre 267 (269)
.+..++.++..++.+-.+...++++++... .++++++..+..+..++...-...||+
T Consensus 412 ~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWRE 475 (1200)
T KOG0964|consen 412 QENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWRE 475 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777666666666666666544 445555555566666666666777875
No 175
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.18 E-value=39 Score=34.68 Aligned_cols=23 Identities=4% Similarity=0.174 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024294 181 LDKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 181 Ld~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
|.+++.--..+.+.|+..|+.+.
T Consensus 339 L~~R~K~Q~q~~~~~r~ri~~i~ 361 (508)
T KOG3091|consen 339 LRQRLKVQDQEVKQHRIRINAIG 361 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555443
No 176
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=58.82 E-value=37 Score=27.67 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
+..++++-+.+.++.+.+++......++++.+.+|
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444445444443
No 177
>PTZ00464 SNF-7-like protein; Provisional
Probab=58.74 E-value=1.4e+02 Score=27.15 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
++.|++++..++.|...|+.++++...
T Consensus 27 ~~~l~kKi~~ld~E~~~ak~~~k~~~~ 53 (211)
T PTZ00464 27 SEVVDARINKIDAELMKLKEQIQRTRG 53 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567788888889999999999886643
No 178
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=58.69 E-value=70 Score=30.82 Aligned_cols=68 Identities=16% Similarity=0.284 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~ 248 (269)
.|-++.+++..+--.|..-|+.+...-.+ -+...+...+.++...-......|++++++.+.+..+|+
T Consensus 38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~-Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 38 YFYQNAEQARQEAIEFADSLDELKEKLKE-MSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999988654321 244444444444444444444444444444444444443
No 179
>PLN02678 seryl-tRNA synthetase
Probab=58.66 E-value=95 Score=31.35 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAEL 247 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL 247 (269)
|.++|+.++.+..+++++|
T Consensus 83 Lk~ei~~le~~~~~~~~~l 101 (448)
T PLN02678 83 LKKEITEKEAEVQEAKAAL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333
No 180
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=58.46 E-value=65 Score=26.34 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
+.+.+..|-.+-..|...+.+|..|..+|.-|...|.+...++.
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555666666666666666666665555443
No 181
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=58.46 E-value=83 Score=24.23 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQ-NAEVNAELKELELKSKR 256 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE-~~~l~~EL~~le~E~~~ 256 (269)
|++++..|+.+|+....+ ...+..++..++.....
T Consensus 55 L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~ 90 (127)
T smart00502 55 LNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEK 90 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666554433 23344444444444333
No 182
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=58.30 E-value=90 Score=32.69 Aligned_cols=33 Identities=24% Similarity=0.138 Sum_probs=20.8
Q ss_pred HHHHHHHHHhc---CCCCCCCcchHHHHHHHHHHHHH
Q 024294 150 TVLKRAFEIAT---SQTQVEQPLCLECMRVLSDKLDK 183 (269)
Q Consensus 150 ~~l~~lFdILS---~~s~IDhPLC~ECtd~Lle~Ld~ 183 (269)
.+-.++.+++. .....+++-+ .+.+.+.+.|..
T Consensus 248 ~l~~~l~e~lr~~~~~~~~~~~~~-~s~~dl~~~l~~ 283 (594)
T PF05667_consen 248 RLQKRLAEQLRQAASASSDNHFRA-SSSDDLADVLHK 283 (594)
T ss_pred HHHHHHHHHHHHhhcccccccccc-cchhHHHHHHHh
Confidence 33356666663 3344556666 888888888777
No 183
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=58.03 E-value=57 Score=23.53 Aligned_cols=30 Identities=37% Similarity=0.564 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
|...+..|+.+...+..++..+..+...|.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 184
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=57.97 E-value=1.3e+02 Score=27.65 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
|.+++.+++.+...+..+....+.|
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~E 104 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEE 104 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444433333333333333333
No 185
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=57.95 E-value=1.2e+02 Score=33.44 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCCCCCCc--chHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhccccccCCHHHHH---
Q 024294 152 LKRAFEIATSQTQVEQP--LCLECMRVLSDKLDKEVDDVTRDIE----------AYEACLQRLEGEARDVLSEADFL--- 216 (269)
Q Consensus 152 l~~lFdILS~~s~IDhP--LC~ECtd~Lle~Ld~ql~~~~~E~d----------~Y~~fL~~L~~e~~~~~seeel~--- 216 (269)
++.+...||+.-.+-.| +|.+=.....-.+..=+..+.+|.+ .|...+++++.+... ++.+
T Consensus 521 L~~m~~~L~~~~e~~dp~~~r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~re~----Eea~~q~ 596 (988)
T KOG2072|consen 521 LTAMAESLSKVVEELDPVIIRNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVEREA----EEAQEQA 596 (988)
T ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHH
Confidence 45666677776666677 4777666655555444444444443 355555555433211 1111
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 217 KE-KLKIEEEERKLEAAIEETEKQNAEVNAE 246 (269)
Q Consensus 217 ~E-l~~Le~EE~~L~~eLeeLEkE~~~l~~E 246 (269)
++ .+.-+.|+.+|.+++.+=|+++-..+.+
T Consensus 597 ~e~~~~r~aE~kRl~ee~~Ere~~R~l~E~e 627 (988)
T KOG2072|consen 597 KEQRQAREAEEKRLIEEKKEREAKRILREKE 627 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1223566777777777666655554444
No 186
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=57.89 E-value=93 Score=35.63 Aligned_cols=55 Identities=9% Similarity=0.053 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFF 266 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWr 266 (269)
.+.|+.|..+|..+-.+.++.|++||.+...-+..|..+++++..|+.+=++..+
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 4555666677777777778888899988888888888888888777776665544
No 187
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=57.58 E-value=1.6e+02 Score=27.17 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETE----KQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLE----kE~~~l~~EL~~le~E~~~Ld~e 260 (269)
.+..++..|+.....|...|.+++ .+.......|..++.+...+..+
T Consensus 227 ~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~ 277 (312)
T PF00038_consen 227 SLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREE 277 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Confidence 344444555555555555554443 23333444444555544444443
No 188
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=57.55 E-value=92 Score=29.55 Aligned_cols=56 Identities=16% Similarity=0.228 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhc
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE-------LKSKRFKELEERYFFNI 268 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le-------~E~~~Ld~eEe~yWre~ 268 (269)
+..++.+..+..+|+.|...|+.-..|.+....-|+.|+ .|.+.|+.|=.+.|..|
T Consensus 179 ~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y 241 (267)
T PF10234_consen 179 QQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIY 241 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666665555555555555555 45555555544444443
No 189
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=57.47 E-value=34 Score=24.92 Aligned_cols=30 Identities=33% Similarity=0.575 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 221 KIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 221 ~Le~EE~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
.+..+-..+..+++.+.++.+++.++++.+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444445555555555555555544
No 190
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=57.18 E-value=30 Score=26.83 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024294 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYFF 266 (269)
Q Consensus 231 ~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWr 266 (269)
++|+++-+.+.+|+.+|.++|.+ .-..|..|+.
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~q---Iy~~Et~YL~ 34 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQ---IYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 45666666666666666666644 3444555665
No 191
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=56.88 E-value=75 Score=33.05 Aligned_cols=20 Identities=15% Similarity=0.458 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 024294 185 VDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 185 l~~~~~E~d~Y~~fL~~L~~ 204 (269)
+.-..+|...|--|+++|..
T Consensus 190 ~~~~~keq~~y~~~~Kelrd 209 (596)
T KOG4360|consen 190 LTYEEKEQQLYGDCVKELRD 209 (596)
T ss_pred cchhHHHHHHHHHHHHHHHH
Confidence 34556777888888888864
No 192
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=56.83 E-value=1.4e+02 Score=30.92 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 180 KLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
.|+.+...+..+-..|.++.+.++.
T Consensus 299 ~l~ek~r~l~~D~nk~~~~~~~mk~ 323 (622)
T COG5185 299 TLREKWRALKSDSNKYENYVNAMKQ 323 (622)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444445555556666665544
No 193
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.81 E-value=1.9e+02 Score=27.82 Aligned_cols=91 Identities=18% Similarity=0.289 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc----cCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-----
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARD----VLSEADFLKEKLK----IEEEERKLEAAIEETEKQNAEVN----- 244 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~----~~seeel~~El~~----Le~EE~~L~~eLeeLEkE~~~l~----- 244 (269)
++.+-.+++....+.+.+...+++|...... ...+..+..+|+. +...-+.+...|+.++++.++..
T Consensus 35 l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~ 114 (297)
T KOG0810|consen 35 LEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRS 114 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 4555566666666666666666666554321 1233444444443 34444445555666665544443
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHhhhhc
Q 024294 245 ------------AELKELELKSKRFKELEERYFFNI 268 (269)
Q Consensus 245 ------------~EL~~le~E~~~Ld~eEe~yWre~ 268 (269)
.-.+.+.+.-..+.+....||.+|
T Consensus 115 ~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~ 150 (297)
T KOG0810|consen 115 SAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEY 150 (297)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777778888889999876
No 194
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=56.80 E-value=1.8e+02 Score=27.47 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQR 201 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~ 201 (269)
+..++.++..+..+...+..+++.
T Consensus 83 l~~l~~~~~~l~a~~~~l~~~~~~ 106 (423)
T TIGR01843 83 AAELESQVLRLEAEVARLRAEADS 106 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344555555555555555555543
No 195
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=56.78 E-value=50 Score=32.78 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024294 228 KLEAAIEETEKQNAEVNAEL 247 (269)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~EL 247 (269)
.+.++|++++++...+++++
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 77 ELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333
No 196
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=56.66 E-value=95 Score=24.35 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEE 235 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLee 235 (269)
.+...+..+-..+..++..
T Consensus 74 ~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 74 AEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 197
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.41 E-value=1.8e+02 Score=27.37 Aligned_cols=7 Identities=0% Similarity=0.354 Sum_probs=5.4
Q ss_pred HHhhhhc
Q 024294 262 ERYFFNI 268 (269)
Q Consensus 262 e~yWre~ 268 (269)
..||++|
T Consensus 151 a~wy~dy 157 (246)
T KOG4657|consen 151 ASWYNDY 157 (246)
T ss_pred HHHHHHh
Confidence 6788877
No 198
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=56.33 E-value=99 Score=24.42 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 024294 182 DKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE-------LKS 254 (269)
Q Consensus 182 d~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le-------~E~ 254 (269)
..+|..++.+++.-..-+.....+ ...+++.+.+|..|-....++...+++....+..|++.|. .-.
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~~~------~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i 75 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKVKE------LTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELI 75 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHH
Confidence 455666666655555555544332 2345555666666666666666666666666666666555 344
Q ss_pred HHHHHHHHHhhh
Q 024294 255 KRFKELEERYFF 266 (269)
Q Consensus 255 ~~Ld~eEe~yWr 266 (269)
.+|.+-|..|-+
T Consensus 76 ~~L~~~E~~~~~ 87 (96)
T PF08647_consen 76 EQLKETEKEFVR 87 (96)
T ss_pred HHHHHHHHHHHH
Confidence 566666666543
No 199
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=55.77 E-value=48 Score=31.87 Aligned_cols=42 Identities=29% Similarity=0.349 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY 264 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~y 264 (269)
+.|-..|+.+|+.|++...+|..+...+++|.+.|++.=..+
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456788888999999999999999998888887754433
No 200
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.67 E-value=1.3e+02 Score=29.23 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=17.5
Q ss_pred CChhhhHHHHHHHHHHhcCCCCCCCc
Q 024294 143 SGFHSTITVLKRAFEIATSQTQVEQP 168 (269)
Q Consensus 143 ~~ls~~i~~l~~lFdILS~~s~IDhP 168 (269)
..+...|.+-.+++.|. +++.-|.|
T Consensus 66 ~~vekEV~iRkrv~~i~-Nk~e~dF~ 90 (309)
T TIGR00570 66 PTVEKEVDIRKRVLKIY-NKREEDFP 90 (309)
T ss_pred HHHHHHHHHHHHHHHHH-ccchhccC
Confidence 44666777777888887 55666766
No 201
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=55.66 E-value=1.4e+02 Score=32.41 Aligned_cols=44 Identities=34% Similarity=0.382 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
.+|.++....+.+-..|...|+.+|++...|.-|+.-+.+|++-
T Consensus 123 ~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kelei 166 (769)
T PF05911_consen 123 AELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEI 166 (769)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555667777788888888899988888888888877653
No 202
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=55.39 E-value=1.3e+02 Score=30.49 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 024294 180 KLDKEVDDVTRDIE 193 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d 193 (269)
+.|+++.+++.++.
T Consensus 10 ~~dqr~~~~~~~la 23 (459)
T KOG0288|consen 10 ENDQRLIDLNTELA 23 (459)
T ss_pred hhhhHHHHHHHHHH
Confidence 34455555555443
No 203
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=55.33 E-value=92 Score=23.76 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 211 seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
++..|+.|+..|+++-..|..+-..|..+...+..+..+.+....
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666665555555555555555555555544444333
No 204
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=55.28 E-value=1.4e+02 Score=32.05 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=13.6
Q ss_pred HHHHHHHHhcC-CCCCCCcchHH
Q 024294 151 VLKRAFEIATS-QTQVEQPLCLE 172 (269)
Q Consensus 151 ~l~~lFdILS~-~s~IDhPLC~E 172 (269)
+.++|-+-|++ -+.++|+-|-+
T Consensus 83 taa~i~eWles~~p~~~~~s~~~ 105 (861)
T KOG1899|consen 83 TAARIAEWLESPSPSMSTVSCPE 105 (861)
T ss_pred HHHHHHHHHhccCCCCCCccCCc
Confidence 44556666644 36777877765
No 205
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=55.23 E-value=20 Score=35.82 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024294 236 TEKQNAEVNAELKELELKSKRFKELEERYFFNI 268 (269)
Q Consensus 236 LEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre~ 268 (269)
+.++...++.+++.++ .+|+..|++||++|
T Consensus 411 l~~~i~~l~~~i~~~~---~rl~~~e~rl~~qF 440 (462)
T PRK08032 411 VNKTLKKLTKQYNAVS---DSIDATIARYKAQF 440 (462)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4444444444554444 46677888999887
No 206
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=55.19 E-value=1.7e+02 Score=26.67 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 184 EVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER 263 (269)
Q Consensus 184 ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~ 263 (269)
.+..+.+-++.|...-+.++....+..+..++.+-..++++-...-...+..+...+.....++...=...++|+++=-.
T Consensus 121 ~~~~l~KaK~~Y~~~c~e~e~~~~~~~s~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~ 200 (261)
T cd07648 121 TTAALQKAKEAYHARCLELERLRRENASPKEIEKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLR 200 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444333222112234444444444444455566666666666666666666555555555554444
Q ss_pred hhhh
Q 024294 264 YFFN 267 (269)
Q Consensus 264 yWre 267 (269)
|-++
T Consensus 201 ~~k~ 204 (261)
T cd07648 201 QMKE 204 (261)
T ss_pred HHHH
Confidence 4443
No 207
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=55.18 E-value=94 Score=31.70 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 226 ERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
...|.+++..++++..++..+|.+.+
T Consensus 348 le~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 348 LEALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 208
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=55.06 E-value=1.7e+02 Score=28.34 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRL 202 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L 202 (269)
|.+|..|++.+.+|++.-.=-|+.|
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSl 44 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESL 44 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5667777777777776544444444
No 209
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=54.93 E-value=46 Score=32.63 Aligned_cols=74 Identities=23% Similarity=0.307 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhccccc-----c---CCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 024294 187 DVTRDIEAYEACLQRLEGEARD-----V---LSEADFLKEKLKIEEEERKLEAAIEE---TEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~e~~~-----~---~seeel~~El~~Le~EE~~L~~eLee---LEkE~~~l~~EL~~le~E~~ 255 (269)
-.-+..+-|..+++.+ .+... . .-.+.+++++.+++++.+++...|++ ..+.+.++..++..++.+..
T Consensus 212 f~~r~~~Yf~~l~~~f-~d~a~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~ 290 (406)
T PF02388_consen 212 FSIRSLEYFENLYDAF-GDKAKFFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIE 290 (406)
T ss_dssp -----HHHHHHHHHHC-CCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHhc-CCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHH
Confidence 3446677788888888 33221 0 12344455566666665555555432 34456666777777777666
Q ss_pred HHHHHH
Q 024294 256 RFKELE 261 (269)
Q Consensus 256 ~Ld~eE 261 (269)
++++.-
T Consensus 291 ~~~~~~ 296 (406)
T PF02388_consen 291 EAEELI 296 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 210
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=54.90 E-value=1e+02 Score=31.93 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 172 ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
-|+..|-+.=..|+....+..+.|..-.+++..
T Consensus 17 r~~~~l~~g~e~ef~rl~k~fed~~ek~~r~~a 49 (604)
T KOG3564|consen 17 RDIEILGEGNEDEFIRLRKDFEDFEEKWKRTDA 49 (604)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHhhhhH
Confidence 466666666666666666666666655555543
No 211
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=54.81 E-value=1.2e+02 Score=30.08 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHH
Q 024294 234 EETEKQNAEVNAEL 247 (269)
Q Consensus 234 eeLEkE~~~l~~EL 247 (269)
+++.++...+++++
T Consensus 76 ~~l~~~~~~~~~~~ 89 (425)
T PRK05431 76 KELKEEIKALEAEL 89 (425)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 212
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.77 E-value=1.2e+02 Score=34.16 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=8.6
Q ss_pred ceeeccCCCCCCCCCCC
Q 024294 72 SFVVLPKQRPQSHGVPP 88 (269)
Q Consensus 72 s~vvlp~~~~~~~~~~~ 88 (269)
-+.+||=.+-+...++|
T Consensus 571 RvTiIPLnKI~s~~~s~ 587 (1174)
T KOG0933|consen 571 RVTIIPLNKIQSFVLSP 587 (1174)
T ss_pred eeEEEechhhhhccCCH
Confidence 34566666554444443
No 213
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=54.67 E-value=64 Score=36.08 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024294 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFF 266 (269)
Q Consensus 211 seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWr 266 (269)
+.-.+..++..+++--+.|.++|++-=...-++..||..+++|...|.++-..|..
T Consensus 171 ~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ 226 (1195)
T KOG4643|consen 171 KNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLD 226 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777777777766666667777777777777777766666554
No 214
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=54.65 E-value=1.1e+02 Score=31.31 Aligned_cols=52 Identities=10% Similarity=0.062 Sum_probs=31.9
Q ss_pred CChhhhHHHHHHHHHHhcCCCCCCCcchHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 024294 143 SGFHSTITVLKRAFEIATSQTQVEQPLCLECMRV----LSDKLDKEVDDVTRDIEAYE 196 (269)
Q Consensus 143 ~~ls~~i~~l~~lFdILS~~s~IDhPLC~ECtd~----Lle~Ld~ql~~~~~E~d~Y~ 196 (269)
.++...+..+.+| -|+|+|.-..=-|..--+- -+-.++..|.+++...+.|+
T Consensus 40 ~pv~~el~kvk~l--~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~r 95 (560)
T PF06160_consen 40 LPVADELSKVKKL--NLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYR 95 (560)
T ss_pred CCHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccc
Confidence 4566677777777 4677766555555544433 34566677777776666554
No 215
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=54.41 E-value=2e+02 Score=28.34 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
+..++.++..++.++..-..-++.|+
T Consensus 206 l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 206 ISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777666555555444
No 216
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=54.30 E-value=71 Score=27.60 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 211 seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
..+-+.+++++|++....+.++|.+|.+....+.+++.++..+..+
T Consensus 95 Aie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 95 AIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888889999999999999999998888776543
No 217
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=54.13 E-value=33 Score=26.84 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
|.++|+.++++++.+..++..++.+.
T Consensus 75 l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 75 LEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555554443
No 218
>PF14282 FlxA: FlxA-like protein
Probab=54.03 E-value=89 Score=25.18 Aligned_cols=18 Identities=11% Similarity=0.366 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDI 192 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~ 192 (269)
+..++.|.+|+..+..+.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql 35 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQL 35 (106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666777777777666554
No 219
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=53.98 E-value=2.3e+02 Score=27.97 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 180 KLDKEVDDVTRDIEAYEACLQRL 202 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d~Y~~fL~~L 202 (269)
.++.++..+..+...+..+++.+
T Consensus 101 ~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 101 LLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555544
No 220
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=53.76 E-value=4.6 Score=32.96 Aligned_cols=19 Identities=26% Similarity=0.449 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024294 231 AAIEETEKQNAEVNAELKE 249 (269)
Q Consensus 231 ~eLeeLEkE~~~l~~EL~~ 249 (269)
.+|..++.+.+++.+++.+
T Consensus 20 ~~l~~l~~el~~L~~~l~e 38 (118)
T PF08286_consen 20 SELESLQSELEELKEELEE 38 (118)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 221
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=53.74 E-value=95 Score=23.46 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL-KSKRFKELEERYF 265 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~-E~~~Ld~eEe~yW 265 (269)
......++..++.+-..+...|.....+...++.-...... ........|..+-
T Consensus 61 i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq~~l 115 (123)
T PF02050_consen 61 IQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRREEYQQEEERREQKEL 115 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777777777666666666554443332 2224444444443
No 222
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=53.69 E-value=2e+02 Score=29.48 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFFN 267 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre 267 (269)
+++..++.+-..+...+.........+..++..+..+...+..+...+|..
T Consensus 355 keL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~ 405 (569)
T PRK04778 355 KQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEM 405 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344333333444444444445566677777777777777777766653
No 223
>smart00338 BRLZ basic region leucin zipper.
Probab=53.65 E-value=67 Score=23.18 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 232 AIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 232 eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
++..|+.+...|..++..++.+...|
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444443333
No 224
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.58 E-value=71 Score=30.30 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024294 235 ETEKQNAEVNAELKELE 251 (269)
Q Consensus 235 eLEkE~~~l~~EL~~le 251 (269)
++.++..++.++|+.++
T Consensus 70 ~~~~~i~~~~~eik~l~ 86 (265)
T COG3883 70 ELQKEIDQSKAEIKKLQ 86 (265)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 225
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=53.55 E-value=38 Score=24.70 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEV 243 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l 243 (269)
++..|+.+-+.+.++.+.|+++.+.+
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444
No 226
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=53.53 E-value=58 Score=33.30 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 171 LECMRVLSDKLDKEVDDVTRDIEA 194 (269)
Q Consensus 171 ~ECtd~Lle~Ld~ql~~~~~E~d~ 194 (269)
.-|++.=++.|+++|+.+..|..+
T Consensus 254 Lq~aEqsl~dlQk~Lekar~e~rn 277 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKAREEQRN 277 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 357778888888888888777433
No 227
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=53.51 E-value=59 Score=32.18 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
..+..++..+.++......-+.+|+.. ...+.+. ........+..+.+..+.+.+..+.+++++++++...|.
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~------l~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKN------LKKLKKL-KKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhhh-cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777787777777777766542 1111110 000011122334444555555555555555555555554
Q ss_pred HHH
Q 024294 259 ELE 261 (269)
Q Consensus 259 ~eE 261 (269)
++=
T Consensus 403 ~~l 405 (451)
T PF03961_consen 403 EEL 405 (451)
T ss_pred HHH
Confidence 443
No 228
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=53.48 E-value=1.7e+02 Score=33.53 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024294 181 LDKEVDDVTRDIEAYEACLQ 200 (269)
Q Consensus 181 Ld~ql~~~~~E~d~Y~~fL~ 200 (269)
+...+..+++=+..|..|.+
T Consensus 242 l~~~~~~l~~i~~~y~~y~~ 261 (1353)
T TIGR02680 242 LEALERALRNFLQRYRRYAR 261 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444555555
No 229
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.42 E-value=81 Score=35.77 Aligned_cols=30 Identities=17% Similarity=0.388 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 227 RKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 227 ~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
+.|...+..+.++-+.+.+++..++++...
T Consensus 461 ~~l~e~~~~l~~~t~~~~~e~~~~ekel~~ 490 (1293)
T KOG0996|consen 461 RELDEILDSLKQETEGIREEIEKLEKELMP 490 (1293)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 333333444444445555555555544443
No 230
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=53.38 E-value=1.8e+02 Score=31.69 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 024294 186 DDVTRDIEAYEACLQRLEGE 205 (269)
Q Consensus 186 ~~~~~E~d~Y~~fL~~L~~e 205 (269)
+.+.++.-.-...+++|...
T Consensus 463 EkLSK~ql~qs~iIkKLRAk 482 (961)
T KOG4673|consen 463 EKLSKKQLAQSAIIKKLRAK 482 (961)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 33333444444455555543
No 231
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=53.26 E-value=1.8e+02 Score=26.64 Aligned_cols=87 Identities=16% Similarity=0.228 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 181 Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
++..+..+.+-++.|..-.+..+.......+..++.+-..++.+-.......++.+++.+.....++...=...++++++
T Consensus 118 ~q~~~~~l~kaK~~Y~~~cke~e~a~~~~~s~k~leK~~~K~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~ 197 (261)
T cd07674 118 LQVQSQHLQKSRENYHSKCVEQERLRREGVPQKELEKAELKTKKAAESLRGSVEKYNRARGDFEQKMLESAQKFQDIEET 197 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666777776666554332112244555544444555455566667777777777766665555555555554
Q ss_pred HHHhhhh
Q 024294 261 EERYFFN 267 (269)
Q Consensus 261 Ee~yWre 267 (269)
=-.|-++
T Consensus 198 Ri~~lk~ 204 (261)
T cd07674 198 HLRHMKL 204 (261)
T ss_pred HHHHHHH
Confidence 4444444
No 232
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=53.12 E-value=1.3e+02 Score=28.71 Aligned_cols=19 Identities=11% Similarity=0.354 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEA 197 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~ 197 (269)
.+|..++.....|.+....
T Consensus 2 ~el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 4566666666666555544
No 233
>smart00338 BRLZ basic region leucin zipper.
Probab=53.05 E-value=58 Score=23.50 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~E 246 (269)
.+|+.++..|+.+-..|..++..|+.+...+..+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544443
No 234
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=52.96 E-value=2.3e+02 Score=27.60 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 228 KLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
+|...|..|+++......++..|..|.-.
T Consensus 139 kL~k~i~~Le~e~~~~q~~le~Lr~EKVd 167 (310)
T PF09755_consen 139 KLQKKIERLEKEKSAKQEELERLRREKVD 167 (310)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 45555666666665555666666555443
No 235
>PRK06798 fliD flagellar capping protein; Validated
Probab=52.60 E-value=19 Score=35.90 Aligned_cols=33 Identities=3% Similarity=0.206 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024294 233 IEETEKQNAEVNAELKELELKSKRFKELEERYFFNI 268 (269)
Q Consensus 233 LeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre~ 268 (269)
.+.++.+...++.+++.++ .+++..|++||++|
T Consensus 381 ~~~l~~~i~~l~~~~~~~e---~rl~~~e~~l~~qf 413 (440)
T PRK06798 381 SKSIDNRVSKLDLKITDID---TQNKQKQDNIVDKY 413 (440)
T ss_pred hhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3344455555555544444 45667788999887
No 236
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=52.50 E-value=60 Score=28.98 Aligned_cols=13 Identities=8% Similarity=0.215 Sum_probs=8.1
Q ss_pred CCCCcchHHHHHH
Q 024294 164 QVEQPLCLECMRV 176 (269)
Q Consensus 164 ~IDhPLC~ECtd~ 176 (269)
-=||++|=|++|-
T Consensus 98 ICDy~~CCDGSDE 110 (176)
T PF12999_consen 98 ICDYDICCDGSDE 110 (176)
T ss_pred cCcccccCCCCCC
Confidence 3467777676654
No 237
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=52.47 E-value=1.5e+02 Score=32.26 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=35.1
Q ss_pred HHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024294 155 AFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA 206 (269)
Q Consensus 155 lFdILS~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~ 206 (269)
.|-.-+..+.| .|+-.|-+.. +..|++++..+.+|||+-+.-.+.|+.+.
T Consensus 390 ~~~~k~~~s~~-ssl~~e~~QR-va~lEkKvqa~~kERDalr~e~kslk~el 439 (961)
T KOG4673|consen 390 DLKRKSNESEV-SSLREEYHQR-VATLEKKVQALTKERDALRREQKSLKKEL 439 (961)
T ss_pred HHHHHhhcccc-cchHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444444444 4666666655 45688999999999999999988887654
No 238
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=52.37 E-value=60 Score=28.72 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFFNI 268 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre~ 268 (269)
+++..||.++|+|...|.+-|..-|+...+|...|-- .-...|.+.=.+-|+++
T Consensus 32 eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGi--t~l~elkqnlskg~~~v 85 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGI--TPLSELKQNLSKGWHDV 85 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC--chHHHHHHHHHHHhHhh
Confidence 4455666667776666666666666655555544310 01233444445556553
No 239
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=52.36 E-value=49 Score=29.44 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 239 QNAEVNAELKELELKSKRFKELE 261 (269)
Q Consensus 239 E~~~l~~EL~~le~E~~~Ld~eE 261 (269)
.++.|....+.+..++++|..+|
T Consensus 139 H~~kl~~~~ke~~~kLeeLekEe 161 (177)
T PF03234_consen 139 HRAKLEKEQKELKKKLEELEKEE 161 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 240
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=52.07 E-value=1.9e+02 Score=34.72 Aligned_cols=62 Identities=24% Similarity=0.386 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARD-VLSEADFLKEKLKIEEEERKLEAAIEETEKQ 239 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~-~~seeel~~El~~Le~EE~~L~~eLeeLEkE 239 (269)
++.+..+++.+.++...+..=+..|.....+ .-+..++++.+..++.+-.+|...|+++|.+
T Consensus 1479 lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~ 1541 (1930)
T KOG0161|consen 1479 LEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAA 1541 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444446666666666666666555443211 1234445555555666656666666665543
No 241
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=52.01 E-value=1.9e+02 Score=26.52 Aligned_cols=114 Identities=22% Similarity=0.348 Sum_probs=62.8
Q ss_pred ChhhhHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcccc---------ccC
Q 024294 144 GFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEA----YEACLQRLEGEAR---------DVL 210 (269)
Q Consensus 144 ~ls~~i~~l~~lFdILS~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~----Y~~fL~~L~~e~~---------~~~ 210 (269)
+|..+|-.+++.++=++|=+.|+ =...-+..++.+|..+..+.+. |..-..+-..... +.=
T Consensus 13 ~lq~~i~~as~~lNd~TGYs~Ie------~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sW 86 (207)
T PF05546_consen 13 SLQETIFTASQALNDVTGYSEIE------KLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSW 86 (207)
T ss_pred HHHHHHHHHHHHHHhccChHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 45667777788888888855543 2455556666666666555444 3332221111100 011
Q ss_pred CHHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024294 211 SEADFLK--E----KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFFN 267 (269)
Q Consensus 211 seeel~~--E----l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre 267 (269)
+..++.. + --.++.+|.++...|.++|...+++..+|.+.... ---||+-|.|
T Consensus 87 s~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~L~~~Il~----RYHEEQiWSD 145 (207)
T PF05546_consen 87 SPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVEEAFDDLMRAILT----RYHEEQIWSD 145 (207)
T ss_pred ChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3333331 1 11257777777778887777777766666554422 2467778865
No 242
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=51.96 E-value=88 Score=26.89 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
++++-..+.+|.+-.+..-.+|.++..-.+++..||..|..|.
T Consensus 8 iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~Ek 50 (134)
T PF15233_consen 8 IEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEK 50 (134)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3444444444444444444444444444444444444444333
No 243
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=51.90 E-value=1.2e+02 Score=23.96 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 211 seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
++.=|+.|+..|++.-..|.++...+-..+..|..+..+++.+
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4455667777777777777777777666666666666555544
No 244
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.66 E-value=1.5e+02 Score=30.50 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEER 263 (269)
Q Consensus 230 ~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~ 263 (269)
...|+++|++...+++|+..-++..+.|-.+=++
T Consensus 344 ~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~ 377 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIESNEELAEKLRSELEK 377 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 6788888899989988888777777766655443
No 245
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=51.44 E-value=51 Score=29.14 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
++|.++|+.||..+|.|..-|.+-|.+.+.....|++
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKr 64 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKR 64 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4455667888888888888888888888877777764
No 246
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=51.33 E-value=1.1e+02 Score=35.09 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=53.8
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHH-HHHH
Q 024294 139 QPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEA-DFLK 217 (269)
Q Consensus 139 ~~~~~~ls~~i~~l~~lFdILS~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~see-el~~ 217 (269)
.+..+.|.+--+.|..|-+|||+.+--- .=+++|...++.++++..+-..-|-.++..-+++.+.- -..+
T Consensus 1197 gay~s~f~~me~kl~~ir~il~~~svs~---------~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~ 1267 (1758)
T KOG0994|consen 1197 GAYASRFLDMEEKLEEIRAILSAPSVSA---------EDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGK 1267 (1758)
T ss_pred hhhHhHHHHHHHHHHHHHHHhcCCCccH---------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhh
Confidence 4555778888888999999998865432 23567777777777777766666665543322211111 1124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNA 241 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~ 241 (269)
+|..|+.+-..|...+++|+.+.+
T Consensus 1268 ~LesLq~~~~~l~~~~keL~e~~~ 1291 (1758)
T KOG0994|consen 1268 DLESLQREFNGLLTTYKELREQLE 1291 (1758)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544554444433
No 247
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=51.31 E-value=2.1e+02 Score=26.68 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=4.9
Q ss_pred hhhhHHHHHHHHH
Q 024294 145 FHSTITVLKRAFE 157 (269)
Q Consensus 145 ls~~i~~l~~lFd 157 (269)
|...|..+-+++.
T Consensus 66 L~~~L~~ieki~~ 78 (243)
T cd07666 66 FSQKINVLDKISQ 78 (243)
T ss_pred HHHHhhhhHHHHH
Confidence 3333333333333
No 248
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=51.27 E-value=2.2e+02 Score=28.63 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=21.1
Q ss_pred ChhhhHHHHHHHHHHhcCCCC-CCCcchHH
Q 024294 144 GFHSTITVLKRAFEIATSQTQ-VEQPLCLE 172 (269)
Q Consensus 144 ~ls~~i~~l~~lFdILS~~s~-IDhPLC~E 172 (269)
+++.-+.+|.+=|.||-.+.+ -..|.|.+
T Consensus 56 NinDP~~ALqRDf~~l~Ek~D~EK~p~ct~ 85 (561)
T KOG1103|consen 56 NINDPFAALQRDFAILGEKIDEEKIPQCTE 85 (561)
T ss_pred ccCChHHHHHHHHHHHhccccccccceecc
Confidence 567778899999999966532 23577766
No 249
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=51.24 E-value=95 Score=22.73 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 181 LDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 181 Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
++.++..++++..-+...+.+++.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~ 25 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEK 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777776654
No 250
>PRK10698 phage shock protein PspA; Provisional
Probab=51.13 E-value=1.9e+02 Score=26.21 Aligned_cols=112 Identities=14% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCC--CCCCCcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHH---
Q 024294 149 ITVLKRAFEIATSQ--TQVEQPLCLE-CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKI--- 222 (269)
Q Consensus 149 i~~l~~lFdILS~~--s~IDhPLC~E-Ctd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~L--- 222 (269)
|..+.+|++|+.++ .-+|---=.+ =.+.++..|...+..+....-....--++++..-.......+-......+
T Consensus 1 M~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~ 80 (222)
T PRK10698 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR 80 (222)
T ss_pred CCHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 223 ----------EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 223 ----------e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
..+.......+..++.+.......+..|+....+|...
T Consensus 81 ~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~k 128 (222)
T PRK10698 81 KEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENK 128 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 251
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=51.06 E-value=70 Score=31.66 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 024294 181 LDKEVDDVTRDIEA 194 (269)
Q Consensus 181 Ld~ql~~~~~E~d~ 194 (269)
||++...+..+.+.
T Consensus 35 ld~~~r~~~~~~~~ 48 (418)
T TIGR00414 35 LDDERKKLLSEIEE 48 (418)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 252
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=50.82 E-value=1.5e+02 Score=28.58 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
.+++++.+..+..+-.+...+|+.+......|..++..++.+..+.++.
T Consensus 121 lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdel 169 (302)
T PF09738_consen 121 LEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDEL 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555566667777777777777787777777766653
No 253
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=50.73 E-value=1.6e+02 Score=30.08 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEAC 198 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~f 198 (269)
+....+++++..+.+.|..-
T Consensus 276 ~~~~~~l~d~~~~l~~~~~~ 295 (563)
T TIGR00634 276 GNALTEVEEATRELQNYLDE 295 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555543
No 254
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.69 E-value=75 Score=22.88 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~ 245 (269)
|+..+..|+.+-..|..++..|..+...|..
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444433
No 255
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=50.66 E-value=1.4e+02 Score=24.61 Aligned_cols=23 Identities=30% Similarity=0.474 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 238 KQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 238 kE~~~l~~EL~~le~E~~~Ld~e 260 (269)
.++..+..++..++.....|..+
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666544
No 256
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.64 E-value=1.9e+02 Score=30.93 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=8.7
Q ss_pred CCcchHHHHHHHHHH
Q 024294 166 EQPLCLECMRVLSDK 180 (269)
Q Consensus 166 DhPLC~ECtd~Lle~ 180 (269)
..|.=.||...|...
T Consensus 530 ~~p~~~E~l~lL~~a 544 (717)
T PF10168_consen 530 SSPSPQECLELLSQA 544 (717)
T ss_pred cCCCCHHHHHHHHHH
Confidence 445566777666543
No 257
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=50.47 E-value=8.8 Score=32.24 Aligned_cols=15 Identities=20% Similarity=0.700 Sum_probs=14.5
Q ss_pred CcceecccCCcceee
Q 024294 19 VPRWVCQNCRHFLCI 33 (269)
Q Consensus 19 ~~~~~Cq~C~~~l~i 33 (269)
.+||+|+.|+..+.+
T Consensus 51 ~qRyrC~~C~~tf~~ 65 (129)
T COG3677 51 HQRYKCKSCGSTFTV 65 (129)
T ss_pred ccccccCCcCcceee
Confidence 899999999999998
No 258
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=50.41 E-value=2.4e+02 Score=27.18 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 173 CMRVLSDKLDKEVDDVTRDIEAYEACLQR 201 (269)
Q Consensus 173 Ctd~Lle~Ld~ql~~~~~E~d~Y~~fL~~ 201 (269)
=....|+.++++++.++...+.|...+..
T Consensus 85 ~q~~~i~~l~~~i~~l~~~i~~y~~~~~~ 113 (301)
T PF06120_consen 85 AQKRAIEDLQKKIDSLKDQIKNYQQQLAE 113 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567888888899888888888877664
No 259
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=50.01 E-value=5.4 Score=42.04 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRLEGEAR--DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~--~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
++|++++...+.+.+.+...+........ ......+++.++.+++++-+++.+.++.|.++..++.+++..++.+...
T Consensus 34 de~erkL~~le~~I~k~~~~~~~~~~~~~~~~~~~i~~le~~l~~le~~l~e~~~~~e~L~~~~~~L~E~~~~L~~~~~~ 113 (759)
T PF01496_consen 34 DEMERKLRFLEEEIKKLKIPLPEKNDKPDAPKPKEIDELEEELEELEEELRELNENLEKLEEELNELEEEKNVLEEEIEF 113 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666665555555552111100 0012333444455555555555555555555555555555555555555
Q ss_pred HHH
Q 024294 257 FKE 259 (269)
Q Consensus 257 Ld~ 259 (269)
+++
T Consensus 114 l~~ 116 (759)
T PF01496_consen 114 LEE 116 (759)
T ss_dssp ---
T ss_pred HHh
Confidence 544
No 260
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=49.88 E-value=2e+02 Score=26.00 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 170 CLECMRVLSDKLDKEVDDVTRDIEA 194 (269)
Q Consensus 170 C~ECtd~Lle~Ld~ql~~~~~E~d~ 194 (269)
|..=.+.|-+.+..+...+..+++.
T Consensus 16 ~~~~i~~L~~q~~~~~~~i~~~r~~ 40 (206)
T PF14988_consen 16 KEKKIEKLWKQYIQQLEEIQRERQE 40 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566667777777777777765
No 261
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=49.88 E-value=2.4e+02 Score=28.39 Aligned_cols=37 Identities=32% Similarity=0.332 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (269)
Q Consensus 225 EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eE 261 (269)
-|+.....|+++..|++.|.+++..++...+.|++|-
T Consensus 239 teaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEm 275 (561)
T KOG1103|consen 239 TEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEM 275 (561)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666655555554443
No 262
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=49.76 E-value=2.6e+02 Score=29.01 Aligned_cols=59 Identities=22% Similarity=0.422 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhccccccCCHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 024294 191 DIEAYEACLQRLEGEARDVLSEADFL---KEKLKIEEEERKLEAAIE----ETEKQNAEVNAELKELE 251 (269)
Q Consensus 191 E~d~Y~~fL~~L~~e~~~~~seeel~---~El~~Le~EE~~L~~eLe----eLEkE~~~l~~EL~~le 251 (269)
+.+.|+.=++.|+.. +..+..++. +++++|+.+-+...+.++ +|+...+++.+++++++
T Consensus 192 ~~~~yk~~v~~i~~~--~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 192 DLEEYKKRLEAIKKK--DIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred hHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334566556666553 233555444 456666665555444444 34444555555555554
No 263
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=49.57 E-value=1.9e+02 Score=32.02 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
.+......++|+.+++++..+-+++..-+
T Consensus 521 ~qs~~~~~~~l~~~l~~KD~~~~~~~~~~ 549 (980)
T KOG0980|consen 521 AQSHNNQLAQLEDLLKQKDRLAAELVARE 549 (980)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444444455555555555444444333
No 264
>PLN02678 seryl-tRNA synthetase
Probab=49.50 E-value=67 Score=32.41 Aligned_cols=7 Identities=29% Similarity=0.264 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 024294 238 KQNAEVN 244 (269)
Q Consensus 238 kE~~~l~ 244 (269)
++...++
T Consensus 85 ~ei~~le 91 (448)
T PLN02678 85 KEITEKE 91 (448)
T ss_pred HHHHHHH
Confidence 3333333
No 265
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=49.46 E-value=86 Score=23.71 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
.|......|+.|=..|.+++..+..|++.+-+-+.......+
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666666666666555554444433
No 266
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=49.31 E-value=2e+02 Score=25.97 Aligned_cols=26 Identities=12% Similarity=0.403 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
++.+..++..++.+...-..-|+.|+
T Consensus 136 ~e~~E~ki~eLE~el~~~~~~lk~lE 161 (237)
T PF00261_consen 136 AEAAESKIKELEEELKSVGNNLKSLE 161 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhchhHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444443
No 267
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=49.30 E-value=1.6e+02 Score=24.63 Aligned_cols=40 Identities=20% Similarity=0.388 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~ 252 (269)
+.+......|+.+-+.+..++..++.....+..+++.++.
T Consensus 69 ~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~ 108 (151)
T PF11559_consen 69 ERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA 108 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555554444444444444443
No 268
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=49.07 E-value=1.9e+02 Score=25.60 Aligned_cols=40 Identities=28% Similarity=0.512 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eE 261 (269)
|.+.|..|....+.|++....|+.....+......|+..+
T Consensus 87 l~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~ 126 (201)
T PF12072_consen 87 LQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEERE 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555444444444444443333344333
No 269
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=49.02 E-value=1.7e+02 Score=31.21 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024294 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYFFN 267 (269)
Q Consensus 230 ~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre 267 (269)
.++|..|.++...+.+++..+......+.++-+..|+.
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~ 277 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKELNDQVSLLTREVQEALKE 277 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444455555555543
No 270
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.95 E-value=1.9e+02 Score=33.00 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYF 265 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yW 265 (269)
|..+...-.+...+|..++.+...+..|+++.+.+...+..++..+.
T Consensus 530 L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~ 576 (1293)
T KOG0996|consen 530 LLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLK 576 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333333334445555555555555566666666666666665443
No 271
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=48.77 E-value=1.4e+02 Score=24.33 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
|-..-..+.++++.+.++.+++...++...++.+.|.+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555666666666666655555543
No 272
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=48.69 E-value=1.2e+02 Score=31.37 Aligned_cols=6 Identities=0% Similarity=-0.042 Sum_probs=2.4
Q ss_pred eecccC
Q 024294 22 WVCQNC 27 (269)
Q Consensus 22 ~~Cq~C 27 (269)
+.+.+.
T Consensus 313 l~~~~l 318 (638)
T PRK10636 313 LKMEKV 318 (638)
T ss_pred EEEEee
Confidence 344443
No 273
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=48.66 E-value=2e+02 Score=25.73 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCC-----CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 151 VLKRAFEIATSQ-----TQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (269)
Q Consensus 151 ~l~~lFdILS~~-----s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~ 200 (269)
.+.+|++|+.++ -.+.-|. .=.+.++..|...|..+....-....--+
T Consensus 3 if~Rl~~iv~a~~n~~~dk~EDP~--~~l~q~irem~~~l~~ar~~lA~~~a~~k 55 (219)
T TIGR02977 3 IFSRFADIVNSNLNALLDKAEDPE--KMIRLIIQEMEDTLVEVRTTSARTIADKK 55 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666543 1233354 24677777777777766655544444333
No 274
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=48.43 E-value=3.1e+02 Score=28.79 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 177 LSDKLDKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
=++.|+.+++.+..+...+...++.+.
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~ 355 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLK 355 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666555555554
No 275
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=48.31 E-value=1.8e+02 Score=25.02 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eE 261 (269)
....|..|......|...-..+....++|=.+.
T Consensus 26 ~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq 58 (157)
T PF04136_consen 26 ILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQ 58 (157)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444444444455444444444444444433
No 276
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=48.30 E-value=1.4e+02 Score=25.03 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024294 181 LDKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 181 Ld~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
|.++++.-..+...+..+|+.+.
T Consensus 35 L~~R~~~Q~~~~~~~~~~l~~i~ 57 (141)
T PF13874_consen 35 LKKRVEAQEEEIAQHRERLKEIN 57 (141)
T ss_dssp -----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555554
No 277
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=48.18 E-value=36 Score=25.18 Aligned_cols=16 Identities=13% Similarity=0.127 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 024294 236 TEKQNAEVNAELKELE 251 (269)
Q Consensus 236 LEkE~~~l~~EL~~le 251 (269)
||+...+.+++..+.+
T Consensus 37 LE~rL~~ae~ra~~ae 52 (60)
T PF11471_consen 37 LEQRLQAAEQRAQAAE 52 (60)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 278
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=48.14 E-value=2.2e+02 Score=29.24 Aligned_cols=45 Identities=13% Similarity=0.396 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIE-ETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLe-eLEkE~~~l~~EL~~le~E~~~L 257 (269)
+.|.+|.+.|++.|...-+.+. .++.++.++..++++++.+..++
T Consensus 83 ~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~ 128 (472)
T TIGR03752 83 EALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQL 128 (472)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3455566666666665555554 33344555555555555444433
No 279
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.94 E-value=1.3e+02 Score=23.41 Aligned_cols=45 Identities=11% Similarity=0.204 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
.++|.++-..|.+|...+....+.|+.+...+..|-..-++..+.
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566666777767777777777777766666555554443
No 280
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=47.74 E-value=84 Score=24.86 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 216 ~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
...+..++.+-.++...++.++++..++..+|..+
T Consensus 69 e~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 69 KERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555544
No 281
>PF13166 AAA_13: AAA domain
Probab=47.65 E-value=2.4e+02 Score=29.04 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
...+..+...+..+...++.+....+.+.
T Consensus 362 ~~~~~~l~~~i~~~n~~i~~~n~~~~~~~ 390 (712)
T PF13166_consen 362 NEDIDELNSIIDELNELIEEHNEKIDNLK 390 (712)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555444443
No 282
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.57 E-value=2.4e+02 Score=31.13 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQR 201 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~ 201 (269)
..-|+.|.++.+....|++.-..-|+.
T Consensus 471 kt~ie~~~~q~e~~isei~qlqarikE 497 (1118)
T KOG1029|consen 471 KTEIEEVTKQRELMISEIDQLQARIKE 497 (1118)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 445666666665555555554444443
No 283
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=47.27 E-value=1e+02 Score=25.46 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
+.+..+-.+-..|.+.+.+|..|...|..|-..|.+...++
T Consensus 15 ~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 15 QNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444445555555555555555555554444443
No 284
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=47.26 E-value=50 Score=26.71 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEK 238 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEk 238 (269)
++++++.+++.+.+.|..+++.|..
T Consensus 38 ~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 38 AQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444445555555555555554443
No 285
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=47.17 E-value=2.1e+02 Score=25.58 Aligned_cols=20 Identities=10% Similarity=0.355 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024294 180 KLDKEVDDVTRDIEAYEACL 199 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d~Y~~fL 199 (269)
.+++++.........|...-
T Consensus 56 ~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 56 ELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544433
No 286
>PLN02320 seryl-tRNA synthetase
Probab=46.97 E-value=80 Score=32.48 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKE 249 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~ 249 (269)
|.++-+.+.++|..+|.+..++++++..
T Consensus 135 l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 135 LVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555544444444443
No 287
>PLN02320 seryl-tRNA synthetase
Probab=46.78 E-value=1.8e+02 Score=29.98 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
|.++.+.|.++...+++++..++.+
T Consensus 135 l~~~~k~lk~~i~~le~~~~~~~~~ 159 (502)
T PLN02320 135 LVEEGKNLKEGLVTLEEDLVKLTDE 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 288
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=46.59 E-value=2.9e+02 Score=26.96 Aligned_cols=54 Identities=20% Similarity=0.339 Sum_probs=42.0
Q ss_pred CChhhhHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 143 SGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 143 ~~ls~~i~~l~~lFdILS~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
.+|..+|..+..-|.-| |--|..=||.+ -.|-+.|+..+.|++.|..--+.|+.
T Consensus 5 hgfga~iae~k~e~sAl-------hqK~~aKtdai-riL~QdLEkfe~Ekd~~a~~aETLel 58 (389)
T KOG4687|consen 5 HGFGAEIAELKKEFSAL-------HQKCGAKTDAI-RILGQDLEKFENEKDGLAARAETLEL 58 (389)
T ss_pred ccccHHHHHHHHHHHHH-------HHHhcccHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 56888889888888777 44577667765 47889999999999999887665543
No 289
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=46.53 E-value=2.3e+02 Score=25.80 Aligned_cols=45 Identities=29% Similarity=0.423 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
|..+...++.|-..|..++..|..+...+-.+...+.....+|..
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELAT 130 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 445555667777777777777777777777777666666666643
No 290
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=46.52 E-value=2.9e+02 Score=26.93 Aligned_cols=83 Identities=13% Similarity=0.213 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Q 024294 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKI------------EEEERKLEAAIEETEKQNAEV 243 (269)
Q Consensus 176 ~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~L------------e~EE~~L~~eLeeLEkE~~~l 243 (269)
.|+.....+-..+..|.+.+..=|..++.+ ..-|.+.+.+. -.|...|+.+|+.+..+.+.+
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD------~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL 145 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGD------IKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL 145 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhch------HHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888888888887777653 22233222221 156778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 024294 244 NAELKELELKSKRFKELEERY 264 (269)
Q Consensus 244 ~~EL~~le~E~~~Ld~eEe~y 264 (269)
+.++.++-.|.+++..|-..|
T Consensus 146 e~d~qs~lDEkeEl~~ERD~y 166 (319)
T PF09789_consen 146 ERDLQSLLDEKEELVTERDAY 166 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888776655
No 291
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=46.48 E-value=2.3e+02 Score=30.62 Aligned_cols=22 Identities=9% Similarity=0.314 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024294 181 LDKEVDDVTRDIEAYEACLQRL 202 (269)
Q Consensus 181 Ld~ql~~~~~E~d~Y~~fL~~L 202 (269)
|..++..++.|.+.-+..+.+.
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~ 53 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNV 53 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555544444444433
No 292
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=46.34 E-value=53 Score=22.19 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 024294 192 IEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAI 233 (269)
Q Consensus 192 ~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eL 233 (269)
.+.|..||+-|+.-.....+..++..++..|-..--.|..+.
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F 42 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEF 42 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHH
Confidence 368999999998766556677888777777755555555543
No 293
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=46.29 E-value=1.5e+02 Score=23.75 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----c--------------cC--------------CHHHHHHHHHHHHH
Q 024294 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEAR----D--------------VL--------------SEADFLKEKLKIEE 224 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~----~--------------~~--------------seeel~~El~~Le~ 224 (269)
-++.|..++..+......|...++-|+.-.. + .+ -+..+.+.+..|+.
T Consensus 14 ~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~~~l~~ 93 (126)
T TIGR00293 14 QVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFLKK 93 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHH
Confidence 4566667777777777777766665532110 0 00 01445555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 225 EERKLEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 225 EE~~L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
....+...++.+++....+..++..+....
T Consensus 94 ~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 94 RIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777766666666544
No 294
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=46.24 E-value=3.4e+02 Score=27.69 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 171 LECMRVLSDKLDKEVDDVTRDIEAYEACL 199 (269)
Q Consensus 171 ~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL 199 (269)
.++|..+++.|..+|+.+..+.+.+..-.
T Consensus 64 Le~akr~veel~~kLe~~~~~~~~a~~~~ 92 (522)
T PF05701_consen 64 LESAKRTVEELKLKLEKAQAEEKQAEEDS 92 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999888877665443
No 295
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=46.22 E-value=2.3e+02 Score=25.75 Aligned_cols=40 Identities=10% Similarity=0.307 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 221 ~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
..-..-.....+...|+.++.+..++|.+++.....|..+
T Consensus 144 ~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 144 QVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677888889999999999999999988888754
No 296
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.13 E-value=1.6e+02 Score=24.10 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
.+..++..|+..-..|++|=..|.-|...|...|..++
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555555555443
No 297
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.09 E-value=1.1e+02 Score=30.26 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
|.+--++|..+++.||++...|+..+.-|..+.
T Consensus 244 L~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 244 LNIGKQKLVAMKETLEQQLQSLQKNIDILKSKV 276 (365)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 333344455555555555555555555554433
No 298
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=45.76 E-value=2.5e+02 Score=26.01 Aligned_cols=20 Identities=15% Similarity=0.332 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024294 174 MRVLSDKLDKEVDDVTRDIE 193 (269)
Q Consensus 174 td~Lle~Ld~ql~~~~~E~d 193 (269)
+...++.+.++++..+++..
T Consensus 44 tk~dve~l~~e~E~~~k~l~ 63 (231)
T COG5493 44 TKQDVEELRKETEQRQKELA 63 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555554443
No 299
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=45.72 E-value=3.8e+02 Score=30.21 Aligned_cols=113 Identities=19% Similarity=0.314 Sum_probs=56.7
Q ss_pred hhhhHHHHHHHHHH-hcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcccc-ccCCHHHHHHHH
Q 024294 145 FHSTITVLKRAFEI-ATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEA---YEACLQRLEGEAR-DVLSEADFLKEK 219 (269)
Q Consensus 145 ls~~i~~l~~lFdI-LS~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~---Y~~fL~~L~~e~~-~~~seeel~~El 219 (269)
+..+++.+..-|+- |++ ..|| |-=..+.+.=++.|+++|..++..+.- |..|++..=.... -......+..++
T Consensus 748 ~~~~~~~le~~~~~eL~~-~GvD-~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~ 825 (1201)
T PF12128_consen 748 AKEQLKELEQQYNQELAG-KGVD-PERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQL 825 (1201)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCC-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 34455555555543 444 5577 445667777777888887777766654 6666654321100 011223344444
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 220 LKIEEEERKLEAAIE----ETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 220 ~~Le~EE~~L~~eLe----eLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
..++.+-..+.+++. +++..+.+++.++..++....+++.
T Consensus 826 ~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~ 869 (1201)
T PF12128_consen 826 RDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEE 869 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333333 3334444444455555544444443
No 300
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=45.50 E-value=7 Score=41.01 Aligned_cols=74 Identities=19% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
.++-+...++.|+..|..|++.... +..+.+++...+..+..+...|..++..+..+...++..+..++.+...
T Consensus 309 ~lq~e~~~Le~el~sW~sl~~~~~~---~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~ 382 (722)
T PF05557_consen 309 ELQLENEKLEDELNSWESLLQDIGL---EFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQ 382 (722)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888889888886432 1224455555566666655555555555555555555555555544433
No 301
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=45.46 E-value=1.5e+02 Score=23.34 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 227 ~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
..+..++..|...+..|+++|.+.+.+...|+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le 66 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLE 66 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Confidence 45566666666666666666666666655554
No 302
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=45.02 E-value=97 Score=30.09 Aligned_cols=45 Identities=24% Similarity=0.436 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
.+.+.+..++.+-..+...++++..+...+..++..++++.+.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 5 ALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555666666666666666666666666666554
No 303
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=44.87 E-value=2.2e+02 Score=31.22 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (269)
Q Consensus 221 ~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe 262 (269)
......+.+.-.|+..|+|..-|.-.|++-.+|..+|.+.-.
T Consensus 505 eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR 546 (861)
T PF15254_consen 505 EALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTR 546 (861)
T ss_pred HHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHH
Confidence 333334444455677778887777777777777777766543
No 304
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=44.58 E-value=70 Score=30.89 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 211 seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
+...|...+.+|+.+-.+....|..|+++..+|+.++..++++..
T Consensus 132 n~~~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid 176 (308)
T PF06717_consen 132 NDQDFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKID 176 (308)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777778777777777777777777777777766665543
No 305
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.58 E-value=2.3e+02 Score=31.98 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY 264 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~y 264 (269)
++.+..++..|+.++.+..+...||.+.+-+...|..+|.++
T Consensus 320 ~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~ 361 (1200)
T KOG0964|consen 320 EQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRL 361 (1200)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHH
Confidence 344444555556666666666666666666666666666554
No 306
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.34 E-value=1.5e+02 Score=27.63 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhcccccc--CCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 189 TRDIEAYEACLQRLEGEARDV--LSEADFLKEKLKIEE-EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (269)
Q Consensus 189 ~~E~d~Y~~fL~~L~~e~~~~--~seeel~~El~~Le~-EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eE 261 (269)
-.|.+.-..|+.+|++..... +.-+.|-.+..+-.= --==|.+.+--+|+-++.+..+|++|+.+...|+..|
T Consensus 3 peE~qlle~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~~ 78 (233)
T COG3416 3 PEEKQLLENLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAGE 78 (233)
T ss_pred HHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 357778888999887643221 112222222111000 0001234444555666666677777777777766653
No 307
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.33 E-value=93 Score=24.91 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 227 RKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 227 ~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
..+...++.++.....++..+..++.+...+
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKEL 100 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 308
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=44.22 E-value=3.7e+02 Score=29.85 Aligned_cols=49 Identities=8% Similarity=0.083 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 210 LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 210 ~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
++.+.+...+..++.+-..+...+..+......+..-...+..-..++.
T Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 870 (1047)
T PRK10246 822 VTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIA 870 (1047)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777666666666666555555444444444333443
No 309
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=44.21 E-value=2e+02 Score=27.37 Aligned_cols=83 Identities=23% Similarity=0.287 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
++||...|+.+..-+..|..+-..........-..+....|+..++++.++..++++++.....++...|..++.+..++
T Consensus 168 V~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l 247 (269)
T PF05278_consen 168 VDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRL 247 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777666665443221110000012223345555555666666666666666666666677777766666
Q ss_pred HHH
Q 024294 258 KEL 260 (269)
Q Consensus 258 d~e 260 (269)
.+.
T Consensus 248 ~k~ 250 (269)
T PF05278_consen 248 SKT 250 (269)
T ss_pred HHH
Confidence 553
No 310
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=44.19 E-value=51 Score=23.46 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 233 IEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 233 LeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
-..+|+..+.|+++|.+|+++-+.|-.
T Consensus 14 ~d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 14 YDNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777666643
No 311
>PRK11281 hypothetical protein; Provisional
Probab=44.11 E-value=2.9e+02 Score=31.33 Aligned_cols=60 Identities=12% Similarity=0.226 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARD-------VLSEADFLKEKLKIEEEERKLEAAIEETE 237 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~-------~~seeel~~El~~Le~EE~~L~~eLeeLE 237 (269)
.+.|++++.++.++.+...+=|+++++.... ..+..++++.+.+++.+-.+..+.|..+.
T Consensus 82 ~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~N 148 (1113)
T PRK11281 82 TEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYN 148 (1113)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777766653211 12334444444444444444444444443
No 312
>PF13166 AAA_13: AAA domain
Probab=43.92 E-value=3.8e+02 Score=27.63 Aligned_cols=25 Identities=16% Similarity=0.326 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRL 202 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L 202 (269)
++.+...++...+..+.+..-+..+
T Consensus 372 i~~~n~~i~~~n~~~~~~~~~~~~~ 396 (712)
T PF13166_consen 372 IDELNELIEEHNEKIDNLKKEQNEL 396 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 313
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.91 E-value=1.3e+02 Score=22.33 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l 243 (269)
.+...|+..+..-+.|.++|+.|+++.+++
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555666666666666666655544
No 314
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=43.91 E-value=1.5e+02 Score=30.69 Aligned_cols=22 Identities=5% Similarity=0.302 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYE 196 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~ 196 (269)
+++-..+..++.++..+++.+.
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~ad 433 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHAD 433 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666655543
No 315
>PF13514 AAA_27: AAA domain
Probab=43.88 E-value=3.5e+02 Score=30.09 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
+..+..+++..+.+.+.|..=+..|-.
T Consensus 745 ~~~~~~ri~~~~~~~~~f~~~~~~L~~ 771 (1111)
T PF13514_consen 745 IRELRRRIEQMEADLAAFEEQVAALAE 771 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888877776643
No 316
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=43.82 E-value=2.1e+02 Score=24.62 Aligned_cols=47 Identities=11% Similarity=0.261 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc----cccCCHHHHHHHHHHHHHHHH
Q 024294 181 LDKEVDDVTRDIEAYEACLQRLEGEA----RDVLSEADFLKEKLKIEEEER 227 (269)
Q Consensus 181 Ld~ql~~~~~E~d~Y~~fL~~L~~e~----~~~~seeel~~El~~Le~EE~ 227 (269)
.+.++..+..+++.|..=|.....+- ....+.++|++++..|+.+-.
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 44555555556666555554332210 012345666666666654443
No 317
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=43.74 E-value=2.8e+02 Score=28.49 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHH
Q 024294 147 STITVLKRAFEI 158 (269)
Q Consensus 147 ~~i~~l~~lFdI 158 (269)
.|-..+..||++
T Consensus 352 ~R~~fldeL~EL 363 (507)
T PF05600_consen 352 TRNQFLDELLEL 363 (507)
T ss_pred HHHHHHHHHHHH
Confidence 444556666666
No 318
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=43.49 E-value=1.2e+02 Score=31.17 Aligned_cols=17 Identities=6% Similarity=-0.210 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHhcCCC
Q 024294 147 STITVLKRAFEIATSQT 163 (269)
Q Consensus 147 ~~i~~l~~lFdILS~~s 163 (269)
.+++-.--.|-||++-.
T Consensus 212 n~~KD~iLv~lili~v~ 228 (575)
T KOG4403|consen 212 NWTKDFILVVLILIGVG 228 (575)
T ss_pred chhhhHHHHHHHHHHhh
Confidence 34444445566666533
No 319
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=43.45 E-value=2.1e+02 Score=25.32 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 238 KQNAEVNAELKELELKSKRFKELEER 263 (269)
Q Consensus 238 kE~~~l~~EL~~le~E~~~Ld~eEe~ 263 (269)
+.+.++++-++.++.=..++.++|..
T Consensus 122 ~hr~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 122 QHRREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444443
No 320
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=43.44 E-value=3e+02 Score=26.28 Aligned_cols=53 Identities=28% Similarity=0.177 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFFN 267 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre 267 (269)
+.++...+..|-.++...-..||.=+.++..+-+.+.++..++..+|+.-+.+
T Consensus 55 l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~e 107 (309)
T PF09728_consen 55 LQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKE 107 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555566666666666666666666555443
No 321
>PRK12705 hypothetical protein; Provisional
Probab=43.29 E-value=3.7e+02 Score=27.77 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
.+.|..|....+.|++....++.....+..+...++..
T Consensus 87 ~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 124 (508)
T PRK12705 87 VQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL 124 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444433
No 322
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=43.19 E-value=50 Score=29.84 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024294 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYFFNI 268 (269)
Q Consensus 231 ~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre~ 268 (269)
.....++++...++.+|..++ ++++..|++||.+|
T Consensus 193 ~~~~~l~~~~~~~~~~i~~~~---~rl~~~~~~l~~qf 227 (239)
T PF07195_consen 193 SRIDSLNSQIKSLDKQIEDLE---ERLESKEERLRKQF 227 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 334444455555555555554 34566666677665
No 323
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=43.14 E-value=2e+02 Score=24.24 Aligned_cols=37 Identities=24% Similarity=0.169 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
|++|+.+.+..-+.-...|++|++.-.....+++...
T Consensus 46 Lq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~ 82 (160)
T PF13094_consen 46 LQEEIEKEEAALERDYEYLQELEKNAKALEREREEEE 82 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444333333333444444444444444444333
No 324
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=43.14 E-value=4e+02 Score=27.63 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 238 KQNAEVNAELKELELKSKRFKELEERY 264 (269)
Q Consensus 238 kE~~~l~~EL~~le~E~~~Ld~eEe~y 264 (269)
.....+..++.+.++..++|.+.++.|
T Consensus 131 ~~~~~L~~~i~~r~~~~~~l~~~~~~l 157 (779)
T PRK11091 131 EAFEQLKNEIKEREETQIELEQQSSLL 157 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555556666665554
No 325
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=43.11 E-value=18 Score=24.63 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=19.1
Q ss_pred CCCccccCCCCcceecccCCcceee
Q 024294 9 KGRTLSVDPNVPRWVCQNCRHFLCI 33 (269)
Q Consensus 9 ~~~~~~~~~~~~~~~Cq~C~~~l~i 33 (269)
=|..+..|+....++|..|..++.+
T Consensus 9 CG~~~~~~~~~~~~~Cp~CG~~~~~ 33 (46)
T PRK00398 9 CGREVELDEYGTGVRCPYCGYRILF 33 (46)
T ss_pred CCCEEEECCCCCceECCCCCCeEEE
Confidence 3556677777778888888888887
No 326
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=42.90 E-value=1.3e+02 Score=26.97 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=5.6
Q ss_pred CCCcchH--HHHHH
Q 024294 165 VEQPLCL--ECMRV 176 (269)
Q Consensus 165 IDhPLC~--ECtd~ 176 (269)
|.--+|. .|+|-
T Consensus 94 VnDGICDy~~CCDG 107 (176)
T PF12999_consen 94 VNDGICDYDICCDG 107 (176)
T ss_pred hcCCcCcccccCCC
Confidence 4444553 35544
No 327
>PRK10869 recombination and repair protein; Provisional
Probab=42.68 E-value=3.4e+02 Score=27.89 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 224 EEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 224 ~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
.....|.++++.+.++..++.++|.+.+.+
T Consensus 341 ~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 341 DDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555544
No 328
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=42.59 E-value=11 Score=24.90 Aligned_cols=15 Identities=40% Similarity=0.702 Sum_probs=12.4
Q ss_pred CCCCcceecccCCcc
Q 024294 16 DPNVPRWVCQNCRHF 30 (269)
Q Consensus 16 ~~~~~~~~Cq~C~~~ 30 (269)
=+++|.|+|..|---
T Consensus 27 i~~vp~~~C~~CGE~ 41 (46)
T TIGR03831 27 IENVPALVCPQCGEE 41 (46)
T ss_pred EeCCCccccccCCCE
Confidence 368999999999754
No 329
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=42.38 E-value=2.6e+02 Score=25.26 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 024294 236 TEKQNAEVNAELKELE 251 (269)
Q Consensus 236 LEkE~~~l~~EL~~le 251 (269)
|+++...|..+|....
T Consensus 202 Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 202 LEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 330
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=42.35 E-value=3e+02 Score=26.01 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
++....+|.+=+.+....+..|+++..+|++.|....++..-|
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344544455556677777788888888887777776654
No 331
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=42.33 E-value=72 Score=23.83 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 221 ~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
.+..+...+.++++.++.+..+|..|+..+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444455555555555555554443
No 332
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=41.96 E-value=2.7e+02 Score=28.40 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
....++.++.+...+|+++..+.+++..-.-+++++.++
T Consensus 84 ~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~ 122 (459)
T KOG0288|consen 84 DVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRK 122 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence 344455555555556665555555555444444444433
No 333
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=41.94 E-value=2.3e+02 Score=24.41 Aligned_cols=102 Identities=17% Similarity=0.252 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHH
Q 024294 148 TITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEER 227 (269)
Q Consensus 148 ~i~~l~~lFdILS~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~ 227 (269)
.+.+|.++-..++....-..|-|.+=+..-|..+..+|..+..=+..-. .+-... .....+.+-.+..+.+
T Consensus 38 E~~~L~~~~~~~~e~~e~~lp~~~~~~~~~L~~l~~~l~~a~~~~~~l~---~~e~~~----~~~~~l~~~~~~~~~~-- 108 (145)
T PF14942_consen 38 EVRVLENLTEMISETNEHILPRCIELMQQNLEQLLERLQAANSMCSRLQ---QKEQEK----QKDDYLQANREQRKQE-- 108 (145)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----hhhHHHHHHHHHHHHH--
Confidence 4555666666666655566788877777677777777777665444322 111110 0112222221122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
-..-++++...+++|+.+-.....+++....
T Consensus 109 -we~f~~e~~~~~~~vdee~~~~~~~l~e~Y~ 139 (145)
T PF14942_consen 109 -WEEFMKEQQQKKQRVDEEFREKEERLKEQYS 139 (145)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234666677888888888777776665543
No 334
>PRK11519 tyrosine kinase; Provisional
Probab=41.88 E-value=2.5e+02 Score=29.70 Aligned_cols=26 Identities=8% Similarity=0.137 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 237 EKQNAEVNAELKELELKSKRFKELEE 262 (269)
Q Consensus 237 EkE~~~l~~EL~~le~E~~~Ld~eEe 262 (269)
..++..+.+++..++.+...+-+.|.
T Consensus 345 ~~~~~~L~~~~~~l~~~~~~lp~~e~ 370 (719)
T PRK11519 345 LEKRKALEDEKAKLNGRVTAMPKTQQ 370 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34444455555555444444444443
No 335
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=41.50 E-value=2.3e+02 Score=30.91 Aligned_cols=41 Identities=15% Similarity=0.394 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
.+..|.++++.+.+.|.++.+.++.+...++.|..+.++|.
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34456777777777788888777777777777777766665
No 336
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=41.48 E-value=57 Score=25.47 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024294 224 EEERKLEAAIEETEKQNA 241 (269)
Q Consensus 224 ~EE~~L~~eLeeLEkE~~ 241 (269)
+|-.+|..+|+.+|.++.
T Consensus 7 eEn~~Lk~eiqkle~ELq 24 (76)
T PF07334_consen 7 EENARLKEEIQKLEAELQ 24 (76)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444443333
No 337
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=41.36 E-value=1.8e+02 Score=32.88 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRL 202 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L 202 (269)
+..|+.+|+...+++..|...+...
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~~~~~~ 175 (1123)
T PRK11448 151 VLTLKQQLELQAREKAQSQALAEAQ 175 (1123)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHH
Confidence 3456666666667777777776654
No 338
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=41.32 E-value=51 Score=29.12 Aligned_cols=10 Identities=0% Similarity=0.474 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 024294 179 DKLDKEVDDV 188 (269)
Q Consensus 179 e~Ld~ql~~~ 188 (269)
+-|+.+|..+
T Consensus 3 eD~EsklN~A 12 (166)
T PF04880_consen 3 EDFESKLNQA 12 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 339
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=41.29 E-value=1.5e+02 Score=22.09 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHH
Q 024294 237 EKQNAEVNAELKEL 250 (269)
Q Consensus 237 EkE~~~l~~EL~~l 250 (269)
+++.+++..+-.+|
T Consensus 37 ~~~~~~l~~en~~L 50 (85)
T TIGR02209 37 QLEIDKLQKEWRDL 50 (85)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 340
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=41.29 E-value=2.4e+02 Score=24.57 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
++.+.+.|...+..|+.+...+...++.+.....+|.+.
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~ 125 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEER 125 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchh
Confidence 444444555555555555555544444333333334333
No 341
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=41.24 E-value=1.3e+02 Score=25.36 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 232 AIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 232 eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
+++.+.+..+.+++.+..++.-...++..
T Consensus 82 ~~~~l~~~i~~Le~~l~~L~~~~~~l~~~ 110 (134)
T cd04779 82 EVQLVCDQIDGLEHRLKQLKPIASQTDRA 110 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 342
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=41.15 E-value=1.8e+02 Score=23.08 Aligned_cols=60 Identities=23% Similarity=0.346 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 182 DKEVDDVTRDIEAYEACLQRLEGEARD-VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (269)
Q Consensus 182 d~ql~~~~~E~d~Y~~fL~~L~~e~~~-~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~ 245 (269)
..|++.+++....|..=|+.++..-.. ..+.+ .-..|++|...+...|...|++...+..
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e----~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPE----ARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChH----HHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 456777777777777777766543211 11211 1223445555555555555554444444
No 343
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=41.14 E-value=3.5e+02 Score=28.03 Aligned_cols=84 Identities=13% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------------------------cCCHHHHHHH-HHHHH-HHHHHHH
Q 024294 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARD------------------------VLSEADFLKE-KLKIE-EEERKLE 230 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~------------------------~~seeel~~E-l~~Le-~EE~~L~ 230 (269)
.+...+++|.....|+++..--|++++..-.. ..+..+-.-+ |+.|+ +-|+...
T Consensus 398 ~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~ 477 (527)
T PF15066_consen 398 ALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATT 477 (527)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 231 AAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 231 ~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
..|..|.+|++..++|+..|++|..+-+++
T Consensus 478 SALdlLkrEKe~~EqefLslqeEfQk~eke 507 (527)
T PF15066_consen 478 SALDLLKREKETREQEFLSLQEEFQKHEKE 507 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 344
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.06 E-value=1.3e+02 Score=28.24 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~ 244 (269)
.+.+++..+++...+|..+++.+++..+.+.
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777777666665
No 345
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=41.03 E-value=1.7e+02 Score=29.13 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 221 ~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
.+++-|..+.++++++..+..+...+++.++..+..
T Consensus 332 ~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~ 367 (373)
T COG5019 332 RLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEK 367 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555555555444433
No 346
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.97 E-value=3.4e+02 Score=27.85 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
..+|.++..+..+.+.+|..-.--++++.+++..-+...+....+|.
T Consensus 136 ~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 136 QLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45677788888777777777777777877777777777766666655
No 347
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.74 E-value=3e+02 Score=29.29 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDV-LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~-~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l 243 (269)
|.++...|..+..|++....--..+....... ..---+..|++.++..|.+|+++-.+||.|.-.+
T Consensus 116 LKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsL 182 (772)
T KOG0999|consen 116 LKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISL 182 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 45555566666666655544444443222111 0112234678888889999998888887554433
No 348
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=40.63 E-value=76 Score=27.28 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 234 EETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 234 eeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
.+||+++..+.+|++.|.+|..++.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLR 101 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443
No 349
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=40.48 E-value=1.5e+02 Score=21.84 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 224 EEERKLEAAIEETEKQNAEVNAELKELEL 252 (269)
Q Consensus 224 ~EE~~L~~eLeeLEkE~~~l~~EL~~le~ 252 (269)
.+-.++...+..+++|..+|..++..+++
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444443
No 350
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=40.43 E-value=3.1e+02 Score=30.42 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEK 238 (269)
Q Consensus 176 ~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEk 238 (269)
.+.+.+..+......+.+.-..-|..+..-+ ....+.+..++..+......+..+++.++.
T Consensus 184 ~~~~~l~er~k~~~~~l~~l~~~l~~~~~ls--~e~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 244 (1047)
T PRK10246 184 QISAMVFEQHKSARTELEKLQAQASGVALLT--PEQVQSLTASLQVLTDEEKQLLTAQQQQQQ 244 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566555555555554444443222111 112233444455555555554444444443
No 351
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=40.22 E-value=2.9e+02 Score=29.06 Aligned_cols=84 Identities=8% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEE--------ERKLEAAIEETEKQNAEVNAE 246 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~E--------E~~L~~eLeeLEkE~~~l~~E 246 (269)
+.++..|..++..++.+...... .-....|....++.++..|+.+ -..+..++..+.+..+.++.+
T Consensus 287 ~~~i~~L~~~l~~l~~~~~~l~~------~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~ 360 (754)
T TIGR01005 287 EDLIQRLRERQAELRATIADLST------TMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSD 360 (754)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH------hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 024294 247 LKELELKSKRFKELEERY 264 (269)
Q Consensus 247 L~~le~E~~~Ld~eEe~y 264 (269)
+.+++.+...+-..|.+|
T Consensus 361 l~~~~~~~~~~~~~~~e~ 378 (754)
T TIGR01005 361 VNQLKAASAQAGEQQVDL 378 (754)
T ss_pred HHHHHHHHHhCcHhHHHH
No 352
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=40.21 E-value=3e+02 Score=25.36 Aligned_cols=74 Identities=20% Similarity=0.202 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARD------VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (269)
Q Consensus 170 C~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~------~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l 243 (269)
|.+=.-..+-.++.++..-+.+.++-..-+.+|..+-.+ .+-..-|+.=|+++++||+....+-+.-+++.+..
T Consensus 140 ~m~K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~eiqe~fGy~vDprd~RF~emLqqkEkeekK~~KeaKrk~k~ekr~ 219 (225)
T KOG4848|consen 140 NMKKYPQTLAKYEASLVKQEQEADAKEVRLERLIREIQEYFGYWVDPRDPRFEEMLQQKEKEEKKAVKEAKRKEKQEKRF 219 (225)
T ss_pred HHHHhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555566666666666666665555555443211 23445556666677777777666666555554443
No 353
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=40.13 E-value=3.7e+02 Score=26.31 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----------------ccC--------CHHHHHHHHHHHHHHH
Q 024294 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR-----------------DVL--------SEADFLKEKLKIEEEE 226 (269)
Q Consensus 172 ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~-----------------~~~--------seeel~~El~~Le~EE 226 (269)
.+|.....+|+.|+..+..|+..-..-+..|+..-. .-| ....|..|...|..--
T Consensus 254 ~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i 333 (384)
T PF03148_consen 254 HETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESI 333 (384)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHH
Confidence 345556667777777777777665555555543210 011 2233446666676666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 227 RKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 227 ~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
..|.+.|.+.+.....|..-...|+.+..
T Consensus 334 ~~L~~~L~~a~~~l~~L~~~~~~Le~di~ 362 (384)
T PF03148_consen 334 EALQEKLDEAEASLQKLERTRLRLEEDIA 362 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777666666666666655554443
No 354
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=40.13 E-value=76 Score=26.77 Aligned_cols=33 Identities=33% Similarity=0.464 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (269)
Q Consensus 211 seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l 243 (269)
++++-.+.+..|++|-+.+.++|++.-++.+++
T Consensus 98 see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~l 130 (144)
T PF11221_consen 98 SEEEQLKRIKELEEENEEAEEELQEAVKEAEEL 130 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555444444444444444444333
No 355
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=40.08 E-value=3.2e+02 Score=30.49 Aligned_cols=12 Identities=0% Similarity=0.089 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 024294 181 LDKEVDDVTRDI 192 (269)
Q Consensus 181 Ld~ql~~~~~E~ 192 (269)
++.|+..++.-|
T Consensus 104 ~~sQiriLQn~c 115 (1265)
T KOG0976|consen 104 HESQIRILQNKC 115 (1265)
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 356
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=40.08 E-value=12 Score=24.98 Aligned_cols=15 Identities=33% Similarity=0.970 Sum_probs=11.4
Q ss_pred ccCCC-CcceecccCC
Q 024294 14 SVDPN-VPRWVCQNCR 28 (269)
Q Consensus 14 ~~~~~-~~~~~Cq~C~ 28 (269)
+.+|+ -+||+|+.|+
T Consensus 21 G~~~~G~qryrC~~C~ 36 (36)
T PF03811_consen 21 GKSPSGHQRYRCKDCR 36 (36)
T ss_pred CCCCCCCEeEecCcCC
Confidence 44555 4899999997
No 357
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.07 E-value=4.3e+02 Score=28.66 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=26.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 165 VEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (269)
Q Consensus 165 IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~ 200 (269)
++--+=.++-+.+...+...+..++.....+...+.
T Consensus 160 l~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 160 LDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556777888888888888888888887777
No 358
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=40.03 E-value=51 Score=25.01 Aligned_cols=13 Identities=8% Similarity=0.248 Sum_probs=8.7
Q ss_pred HHHHHHHHHhhhh
Q 024294 255 KRFKELEERYFFN 267 (269)
Q Consensus 255 ~~Ld~eEe~yWre 267 (269)
..||.+=+.||..
T Consensus 58 ~~LD~~Ld~Y~~~ 70 (74)
T PF13865_consen 58 SKLDAELDSYMSK 70 (74)
T ss_pred HHHHHHHHHHHHc
Confidence 4677777778753
No 359
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=39.90 E-value=74 Score=24.80 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
++..|+++.+.+..++..+..++..++++++-+
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555555566666666666666555543
No 360
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.85 E-value=4.3e+02 Score=29.99 Aligned_cols=20 Identities=10% Similarity=0.388 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024294 182 DKEVDDVTRDIEAYEACLQR 201 (269)
Q Consensus 182 d~ql~~~~~E~d~Y~~fL~~ 201 (269)
..++.++++|.+.|..-++.
T Consensus 786 e~rlkdl~keik~~k~~~e~ 805 (1174)
T KOG0933|consen 786 ERRLKDLEKEIKTAKQRAEE 805 (1174)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 45666677777666665553
No 361
>COG5293 Predicted ATPase [General function prediction only]
Probab=39.78 E-value=4e+02 Score=27.78 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024294 221 KIEEEERKLEAAIEETEK 238 (269)
Q Consensus 221 ~Le~EE~~L~~eLeeLEk 238 (269)
-|.+|-.+++.+|.+++.
T Consensus 383 ~l~ee~~~~~~elae~~~ 400 (591)
T COG5293 383 TLCEEIIALRGELAELEY 400 (591)
T ss_pred HHHHHHHHHhhhHHHHHH
Confidence 344444445555555543
No 362
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=39.72 E-value=1.4e+02 Score=28.97 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hccc--cc--cCCHHHH-HHHHHHHHHHHHHHHHHH
Q 024294 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRL---------------EGEA--RD--VLSEADF-LKEKLKIEEEERKLEAAI 233 (269)
Q Consensus 174 td~Lle~Ld~ql~~~~~E~d~Y~~fL~~L---------------~~e~--~~--~~seeel-~~El~~Le~EE~~L~~eL 233 (269)
..+-+..|-=+..-.++|++.+..|--+= -..- .+ ..++-++ .+.|..=..+.++|..++
T Consensus 31 ~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~~~~~~~~H~lml~RL~~EL~~Rk~L~~~~ 110 (355)
T PF09766_consen 31 LHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDPELTEDDEHQLMLARLEFELEQRKRLEEQL 110 (355)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhccccccCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666677778888766663311 0000 00 0111111 222332244556677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 234 EETEKQNAEVNAELKELELKSKRFKELEE 262 (269)
Q Consensus 234 eeLEkE~~~l~~EL~~le~E~~~Ld~eEe 262 (269)
++|++.++.+.++++..+..+..|...=+
T Consensus 111 ~el~~~k~~l~~~~~~k~~~L~~l~~~L~ 139 (355)
T PF09766_consen 111 KELEQRKKKLQQENKKKKKFLDSLPPQLK 139 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88888888888888888877777665433
No 363
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.69 E-value=6.1e+02 Score=28.72 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 024294 181 LDKEVDDVTRDIEA 194 (269)
Q Consensus 181 Ld~ql~~~~~E~d~ 194 (269)
|..|+.+++.+-.+
T Consensus 229 Lr~QvrdLtEkLet 242 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLET 242 (1243)
T ss_pred HHHHHHHHHHHHHH
Confidence 55566555554433
No 364
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=39.59 E-value=3.4e+02 Score=29.12 Aligned_cols=24 Identities=8% Similarity=0.207 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 232 AIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 232 eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
.|..-..|..++..++++.+...+
T Consensus 122 ~i~~~q~eL~~Lk~~ieqaq~~~~ 145 (907)
T KOG2264|consen 122 LIPQKQLELSALKGEIEQAQRQLE 145 (907)
T ss_pred HHHHhHHHHHHHHhHHHHHHHHHH
Confidence 333333333444444444443333
No 365
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=39.53 E-value=2.2e+02 Score=23.48 Aligned_cols=57 Identities=11% Similarity=0.077 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 191 DIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 191 E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
+...|..|+.+|.. .+......+..++.+.......+.+..+++..++.-+.....+
T Consensus 65 ~l~~~~~fi~~L~~------~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek~~~~ 121 (147)
T PRK05689 65 WWINYQQFLQQLEK------AITQQRQQLTQWTQKVDNARKYWQEKKQRLEALETLQERYQTE 121 (147)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555543 2333445566666666666666766666666666555544433
No 366
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=39.30 E-value=3.6e+02 Score=25.94 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (269)
Q Consensus 170 C~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~ 200 (269)
|.+=...+-+.+.+.-..-.+-++.|....+
T Consensus 18 ~~~Dl~~i~e~~~~~~~~~~~~~~~~~~~~~ 48 (289)
T PF05149_consen 18 CEEDLERIKEKIQNTDAEDAAQRKRYAAQRK 48 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333333333333333333334444333
No 367
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=39.30 E-value=4e+02 Score=30.04 Aligned_cols=87 Identities=22% Similarity=0.308 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------cCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARD--------VLSEADFLKEKLKIEEEERKLEAAIE----ETEKQNAEVNA 245 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~--------~~seeel~~El~~Le~EE~~L~~eLe----eLEkE~~~l~~ 245 (269)
++.+..+++.+......+...+++|..-... ......+..++.++..+...+..+++ ++.+++..+++
T Consensus 241 ~~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~ 320 (1201)
T PF12128_consen 241 FEKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNA 320 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777542211 01222333333333333333333333 33466666677
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 024294 246 ELKELELKSKRFKELEERY 264 (269)
Q Consensus 246 EL~~le~E~~~Ld~eEe~y 264 (269)
++..++.++..+++....|
T Consensus 321 ~l~~~~~~L~~i~~~~~~y 339 (1201)
T PF12128_consen 321 DLARIKSELDEIEQQKKDY 339 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777776666666665555
No 368
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=39.19 E-value=2.3e+02 Score=23.80 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
-.+.|++|+.|.+.+++|+.+.-.+.+.
T Consensus 102 Q~~~i~~L~~E~~~~~~el~~~v~e~e~ 129 (144)
T PF11221_consen 102 QLKRIKELEEENEEAEEELQEAVKEAEE 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666655555544443
No 369
>PF13842 Tnp_zf-ribbon_2: DDE_Tnp_1-like zinc-ribbon
Probab=39.17 E-value=14 Score=23.98 Aligned_cols=15 Identities=33% Similarity=1.001 Sum_probs=13.6
Q ss_pred cceecccCCcceeee
Q 024294 20 PRWVCQNCRHFLCIV 34 (269)
Q Consensus 20 ~~~~Cq~C~~~l~i~ 34 (269)
.+|.|+.|..+|++.
T Consensus 15 T~~~C~~C~v~lC~~ 29 (32)
T PF13842_consen 15 TRYMCSKCDVPLCVE 29 (32)
T ss_pred eEEEccCCCCcccCC
Confidence 799999999999983
No 370
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=39.05 E-value=1.8e+02 Score=28.03 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
|.|=.-|++|-..++.|+..|...-+....- .+..+.+.+..++|.-+-......+--||.+......+|..|+.+.
T Consensus 42 eSlEAaLqKQKqK~e~ek~e~s~LkREnq~l---~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqel 118 (307)
T PF10481_consen 42 ESLEAALQKQKQKVEEEKNEYSALKRENQSL---MESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQEL 118 (307)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH---HHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666665543322211 1244555555555544444444445555555555555555555555
Q ss_pred HHHHHHHH
Q 024294 255 KRFKELEE 262 (269)
Q Consensus 255 ~~Ld~eEe 262 (269)
.++..+=+
T Consensus 119 kr~KsELE 126 (307)
T PF10481_consen 119 KRCKSELE 126 (307)
T ss_pred HHHHHHHH
Confidence 55554443
No 371
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=38.99 E-value=2.2e+02 Score=25.30 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
......+...+..|.+...++..+|.+|+.|..
T Consensus 130 ~~~~~~l~~H~~kl~~~~ke~~~kLeeLekEe~ 162 (177)
T PF03234_consen 130 KAELEELQEHRAKLEKEQKELKKKLEELEKEEK 162 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555566666666666666666666654
No 372
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=38.84 E-value=2e+02 Score=23.00 Aligned_cols=49 Identities=10% Similarity=0.154 Sum_probs=27.3
Q ss_pred HHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 194 AYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (269)
Q Consensus 194 ~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~ 248 (269)
.|..|+..|.. .+......+..++.+.......|.+..+++..++.-..
T Consensus 65 ~~~~f~~~l~~------~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~e 113 (141)
T TIGR02473 65 NYQRFIRQLDQ------RIQQQQQELALLQQEVEAKRERLLEARRELKALEKLKE 113 (141)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554443 22334445666666666666666666666666655544
No 373
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=38.74 E-value=3e+02 Score=24.94 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHH
Q 024294 170 CLECMRVLSDKL 181 (269)
Q Consensus 170 C~ECtd~Lle~L 181 (269)
|-+|-..++.+|
T Consensus 93 qk~~q~Rm~~qL 104 (192)
T PF09727_consen 93 QKKMQRRMLEQL 104 (192)
T ss_pred HHHHHHHHHHHH
Confidence 666666655544
No 374
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=38.71 E-value=2.8e+02 Score=30.18 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
...++..++.+-..+...+..|+++..+...+|..+.
T Consensus 463 ~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~k 499 (775)
T PF10174_consen 463 RQEELETYQKELKELKAKLESLQKELSEKELQLEDAK 499 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 3344444444555555555555555444444444333
No 375
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=38.50 E-value=4.6e+02 Score=26.96 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHh
Q 024294 253 KSKRFKELEERY 264 (269)
Q Consensus 253 E~~~Ld~eEe~y 264 (269)
+.+.|++-++++
T Consensus 100 k~~~l~~~~~~L 111 (475)
T PRK10361 100 KIRQMINSEQRL 111 (475)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 376
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=38.50 E-value=1.8e+02 Score=22.20 Aligned_cols=33 Identities=39% Similarity=0.443 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
...|...++.++.+...+..++..++.+...+.
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554443
No 377
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=38.44 E-value=2.6e+02 Score=24.18 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc--------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRLEGE--------ARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L~~e--------~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~ 248 (269)
......+..+..+...|..+...-+.. .......+.++.++..|..-|+.|.+.+.++......-...+.
T Consensus 28 ~~a~~~~~~a~~~l~dyr~wr~~ee~rly~~~~~~~v~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~ 105 (152)
T PF07321_consen 28 QEARAALQQAEQELADYRQWRQREEERLYAEIQGKVVSLKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALE 105 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667777777777665532221 1111234445566666666676666666655544444333333
No 378
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=38.41 E-value=1.3e+02 Score=29.57 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 220 ~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
..++.+-..+..+.+.++.+...+..|+..++.+.++|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 25 KELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444443
No 379
>PRK14160 heat shock protein GrpE; Provisional
Probab=38.36 E-value=2.2e+02 Score=26.04 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
.++..|+++...|.+++.++......+.++..-++
T Consensus 61 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~R 95 (211)
T PRK14160 61 DENNKLKEENKKLENELEALKDRLLRTVAEYDNYR 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333
No 380
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=38.33 E-value=4.6e+02 Score=29.47 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHhcCCCC--CCCcchH----HHHHHHHHHH
Q 024294 147 STITVLKRAFEIATSQTQ--VEQPLCL----ECMRVLSDKL 181 (269)
Q Consensus 147 ~~i~~l~~lFdILS~~s~--IDhPLC~----ECtd~Lle~L 181 (269)
..++..-++|.-||...+ |+--+|. .|-++|-..+
T Consensus 783 ~~le~a~r~F~~ls~~~d~r~~~~~~~~~a~~c~~ll~~a~ 823 (1018)
T KOG2002|consen 783 KELEEARRLFTELSKNGDKRISKTVIAQEAQLCKDLLKQAL 823 (1018)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445667788888886544 3433443 3555444433
No 381
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=38.25 E-value=1.5e+02 Score=31.03 Aligned_cols=20 Identities=5% Similarity=0.032 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 024294 185 VDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 185 l~~~~~E~d~Y~~fL~~L~~ 204 (269)
+.-++.|...|+.|-++|+.
T Consensus 339 Y~l~e~e~~~vr~~e~eL~e 358 (570)
T COG4477 339 YRLAETELGSVRKFEKELKE 358 (570)
T ss_pred hccChhHHHHHHHHHHHHHH
Confidence 33445566667777776654
No 382
>PRK02793 phi X174 lysis protein; Provisional
Probab=38.20 E-value=1.7e+02 Score=22.05 Aligned_cols=43 Identities=16% Similarity=0.107 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
+...+.+||..-+-+..-+++|-+...+-..+|..++++.+.|
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444544444444445555544444444444444444444
No 383
>PRK07737 fliD flagellar capping protein; Validated
Probab=38.12 E-value=49 Score=33.60 Aligned_cols=31 Identities=19% Similarity=0.561 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024294 235 ETEKQNAEVNAELKELELKSKRFKELEERYFFNI 268 (269)
Q Consensus 235 eLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre~ 268 (269)
.|.++...++.++..++ .+|+..|++||+.|
T Consensus 445 ~l~~~i~~l~~~i~~~~---~rl~~~e~ry~~qf 475 (501)
T PRK07737 445 AIGKDLNQIETQIDRFQ---DRLKQIEDRYYKKF 475 (501)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34455555555665555 35555677888877
No 384
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=38.05 E-value=92 Score=28.96 Aligned_cols=14 Identities=43% Similarity=0.539 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEE 225 (269)
Q Consensus 212 eeel~~El~~Le~E 225 (269)
.+.|..||+++++|
T Consensus 148 ~~~Ll~ELekIKkE 161 (244)
T PF04889_consen 148 TAALLRELEKIKKE 161 (244)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555555443
No 385
>PRK04406 hypothetical protein; Provisional
Probab=37.71 E-value=1.9e+02 Score=22.19 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
+...+..||..-+-+..-+++|-+...+-..+|..++++.+.|
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444433
No 386
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=37.65 E-value=2.7e+02 Score=28.87 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe 262 (269)
...++.+++++..++.+++++++++.+++.++.+
T Consensus 91 ~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~ 124 (646)
T PRK05771 91 VEEELEKIEKEIKELEEEISELENEIKELEQEIE 124 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666665554444
No 387
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=37.63 E-value=43 Score=27.04 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=26.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 163 TQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAY 195 (269)
Q Consensus 163 s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y 195 (269)
.+|-||+|.+--+.+.+-.-++++.+..|..++
T Consensus 58 rDI~HPI~~~~R~kIq~aVl~~Y~~~~~e~~~~ 90 (95)
T COG2088 58 RDIAHPINSDTREKIQDAVLKEYERLDEEAEAV 90 (95)
T ss_pred hhccCcCCHHHHHHHHHHHHHHHHHhchhhhhh
Confidence 478899999998888888888877776655544
No 388
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=37.26 E-value=4e+02 Score=29.23 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY 264 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~y 264 (269)
+|.....++...|.++++.+.+..+++..+-+.+....+.|-+++++.
T Consensus 209 kermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 209 KERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444455566666777777777777777777777777777776666654
No 389
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=37.12 E-value=2.7e+02 Score=23.87 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~ 249 (269)
...+..+..++..+..+++.+..-..+|..... ...-..+.........+-..+...+..++...+.+...+++
T Consensus 104 ~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~-~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i~~ 177 (177)
T PF13870_consen 104 EEELAKLREELYRVKKERDKLRKQNKKLRQQGG-LLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRIKQ 177 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 390
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=37.09 E-value=4.1e+02 Score=26.01 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETE 237 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLE 237 (269)
.+.|++++.++++..+.|..=++.+.+-. ......+.+-+..-+.+...|+.++
T Consensus 6 W~eL~~efq~Lqethr~Y~qKleel~~lQ------~~C~ssI~~QkkrLk~L~~sLk~~~ 59 (330)
T PF07851_consen 6 WEELQKEFQELQETHRSYKQKLEELSKLQ------DKCSSSISHQKKRLKELKKSLKRCK 59 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36788888999988888888777765421 2222333333444444555555553
No 391
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=36.83 E-value=5.3e+02 Score=27.72 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~ 248 (269)
.+++++++.|.+.-.+|...++++....+.|.+-++
T Consensus 582 ~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 582 QELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555544444555555555544444444333
No 392
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=36.77 E-value=1.5e+02 Score=20.77 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 234 EETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 234 eeLEkE~~~l~~EL~~le~E~~~L 257 (269)
..++.+...|..+...|..+...|
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333333
No 393
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=36.60 E-value=4.4e+02 Score=28.71 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024294 174 MRVLSDKLDKEVDDVTRDI 192 (269)
Q Consensus 174 td~Lle~Ld~ql~~~~~E~ 192 (269)
+...+..|+.+| .+..|.
T Consensus 72 ~~~ei~~LqeEL-r~q~e~ 89 (775)
T PF10174_consen 72 AQEEIQALQEEL-RAQREL 89 (775)
T ss_pred HHHHHHHHHHHH-HHhhHH
Confidence 445667777777 444443
No 394
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=36.50 E-value=2.7e+02 Score=27.22 Aligned_cols=43 Identities=14% Similarity=0.323 Sum_probs=29.2
Q ss_pred HHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Q 024294 156 FEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEA-----YEACLQRL 202 (269)
Q Consensus 156 FdILS~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~-----Y~~fL~~L 202 (269)
|||+.+ |..| =-.|...--+.|+.+|+.+.++++. |..||..+
T Consensus 44 HDlF~n-Tk~d---lg~C~kvHd~~lk~~Ye~~~k~~~~~~E~d~~~~l~~~ 91 (319)
T KOG0796|consen 44 HDLFQN-TKMD---LGPCPKVHDEALKADYERASKERDYGYEWDALEILERF 91 (319)
T ss_pred HHHhhh-hhcc---cCcccchhhHHHHHHHhhchHhhhhhhhHHHHHHHHHH
Confidence 566644 4555 1357888889999999999888776 44455444
No 395
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=36.44 E-value=1.1e+02 Score=27.96 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFFNI 268 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre~ 268 (269)
++|..||.++|+|...|++-|..-|+...+|..-|-- .-..+|.+.=.+-|+++
T Consensus 47 eelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGl--t~~~EL~qnisksw~d~ 100 (208)
T KOG4010|consen 47 EELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGL--TVLKELKQNISKSWKDV 100 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--chHHHHHHHHHHHHhhh
Confidence 3455666666666666666666655555544333221 11245566666777764
No 396
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=36.42 E-value=2.1e+02 Score=22.52 Aligned_cols=9 Identities=33% Similarity=0.523 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 024294 250 LELKSKRFK 258 (269)
Q Consensus 250 le~E~~~Ld 258 (269)
|+.+..+|.
T Consensus 51 L~~en~qLk 59 (79)
T PRK15422 51 LERENNHLK 59 (79)
T ss_pred HHHHHHHHH
Confidence 444444443
No 397
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=36.37 E-value=3.7e+02 Score=27.70 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=25.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 163 TQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRL 202 (269)
Q Consensus 163 s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L 202 (269)
.+++. +.+=.+.+-+.+|.=++.+++|.+++....+.+
T Consensus 271 l~l~~--~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~ 308 (560)
T PF06160_consen 271 LELDE--VEEENEEIEERIDQLYDILEKEVEAKKYVEKNL 308 (560)
T ss_pred CCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444 666677777777777778888887776655543
No 398
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=36.33 E-value=2.3e+02 Score=23.91 Aligned_cols=11 Identities=18% Similarity=0.425 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 024294 178 SDKLDKEVDDV 188 (269)
Q Consensus 178 le~Ld~ql~~~ 188 (269)
++.|+.++..+
T Consensus 29 l~~LEae~q~L 39 (126)
T PF09403_consen 29 LNQLEAEYQQL 39 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 399
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=36.31 E-value=34 Score=35.10 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~l 250 (269)
|.++|++|+++..++...+.+.
T Consensus 36 L~kql~~Lk~q~~~l~~~v~k~ 57 (489)
T PF11853_consen 36 LKKQLEELKAQQDDLNDRVDKV 57 (489)
T ss_pred HHHHHHHHHHhhcccccccchh
Confidence 3444444444444444333333
No 400
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=36.23 E-value=1.9e+02 Score=27.75 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 228 KLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
++..+++.++++++.+..+++.++
T Consensus 38 ~l~~~~~~~~~~~~~~~~~~~~~~ 61 (378)
T TIGR01554 38 ELETDVEKLKEEIKLLEDAIADLE 61 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 401
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=36.22 E-value=1.7e+02 Score=32.97 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 210 LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY 264 (269)
Q Consensus 210 ~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~y 264 (269)
...+++.+.+..|++|-.+....|.+++.+...+.+|+..++.|...+-.+-.+|
T Consensus 177 velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra 231 (1195)
T KOG4643|consen 177 VELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRA 231 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677888888888777766667788888888888888888888877776655444
No 402
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=36.00 E-value=5.7e+02 Score=27.30 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024294 182 DKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 182 d~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
+..+..+++|+..-..-|...+
T Consensus 248 q~ri~~lE~e~e~L~~ql~~~N 269 (629)
T KOG0963|consen 248 QQRIVFLEREVEQLREQLAKAN 269 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4566777777776666666444
No 403
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.88 E-value=2.8e+02 Score=29.69 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc-cc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRLEGEAR-DV-------LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~-~~-------~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
..|.++|+++.+-|....--|+++..... .. .-+.-|+.++.--+.=-.+|..||+.++.-.++++..+..|
T Consensus 462 ~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL 541 (852)
T KOG4787|consen 462 ISLATKLEQANKQCRILNERLNKLHRKQVRDGEIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVL 541 (852)
T ss_pred HHHHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHH
Confidence 35677888888888887777777654321 00 11222222222223333456666776666666655555444
Q ss_pred H
Q 024294 251 E 251 (269)
Q Consensus 251 e 251 (269)
.
T Consensus 542 ~ 542 (852)
T KOG4787|consen 542 A 542 (852)
T ss_pred H
Confidence 3
No 404
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=35.87 E-value=2.8e+02 Score=23.70 Aligned_cols=42 Identities=31% Similarity=0.293 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHH-HH-HHH----------HHHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAI-EE-TEK----------QNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eL-ee-LEk----------E~~~l~~EL~~le~E~~~Ld 258 (269)
+||.+|++++....++. +. +.. -...+.++|..|.++.+...
T Consensus 42 ~eL~~L~~~~~~~~~~~l~~~~~~ed~~~~~~~lSs~~v~~~i~~L~~kLe~~~ 95 (142)
T PF07956_consen 42 EELKRLEEEELKKFEEALEKSLLSEDEKDQDPGLSSKSVNEEIEKLREKLEERK 95 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 56777777765554443 21 111 24567888888888877544
No 405
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=35.85 E-value=4.8e+02 Score=26.47 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=13.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHH
Q 024294 166 EQPLCLECMRVLSDKLDKEVDDVTR 190 (269)
Q Consensus 166 DhPLC~ECtd~Lle~Ld~ql~~~~~ 190 (269)
+...=......=+..|.++|..+..
T Consensus 248 ~~~~~i~~a~~~i~~L~~~l~~l~~ 272 (582)
T PF09731_consen 248 DLNSLIAHAKERIDALQKELAELKE 272 (582)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666665554444
No 406
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=35.73 E-value=3.8e+02 Score=25.17 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024294 180 KLDKEVDDVTRDIEAYE 196 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d~Y~ 196 (269)
..+.+++.++++.+.|.
T Consensus 125 ~a~~~l~~a~~~~~R~~ 141 (346)
T PRK10476 125 RARANAKLATRTLERLE 141 (346)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 407
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=35.44 E-value=3.1e+02 Score=25.07 Aligned_cols=7 Identities=29% Similarity=0.297 Sum_probs=3.3
Q ss_pred HHHHhhh
Q 024294 260 LEERYFF 266 (269)
Q Consensus 260 eEe~yWr 266 (269)
.|.+-|.
T Consensus 163 ~ER~~W~ 169 (202)
T PF06818_consen 163 QERRTWQ 169 (202)
T ss_pred HHHHHHH
Confidence 3444454
No 408
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=35.17 E-value=1.6e+02 Score=28.75 Aligned_cols=42 Identities=31% Similarity=0.331 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
.|...+..+++.-..+...+.++++....+..+++.++....
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~ 182 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLD 182 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666666665554433
No 409
>PRK14127 cell division protein GpsB; Provisional
Probab=35.16 E-value=69 Score=26.45 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 197 ACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (269)
Q Consensus 197 ~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~E 246 (269)
.||+.+.. +-+.+.+|+..|+++-++|.++|.+++.........
T Consensus 30 ~FLd~V~~------dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~ 73 (109)
T PRK14127 30 KFLDDVIK------DYEAFQKEIEELQQENARLKAQVDELTKQVSVGASS 73 (109)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
No 410
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=34.78 E-value=1.4e+02 Score=28.68 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~ 249 (269)
+..++..-..|..+++...++...+..++..
T Consensus 244 l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~ 274 (344)
T PF12777_consen 244 LAELEEKLAALQKEYEEAQKEKQELEEEIEE 274 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444333
No 411
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.59 E-value=3.8e+02 Score=30.20 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
.+++.+|-..+..|+.+|.+.++.|..++..+|.....|+++
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666777777777777777777777666666553
No 412
>PF13514 AAA_27: AAA domain
Probab=34.52 E-value=5.1e+02 Score=28.81 Aligned_cols=35 Identities=34% Similarity=0.473 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~ 249 (269)
+..++..++.+-..+..++.++..++..+..+|..
T Consensus 894 l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~ 928 (1111)
T PF13514_consen 894 LEAELEELEEELEELEEELEELQEERAELEQELEA 928 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443
No 413
>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]
Probab=34.43 E-value=7.1 Score=37.32 Aligned_cols=12 Identities=42% Similarity=1.027 Sum_probs=9.9
Q ss_pred cceecccCCcce
Q 024294 20 PRWVCQNCRHFL 31 (269)
Q Consensus 20 ~~~~Cq~C~~~l 31 (269)
.||+||+|++-.
T Consensus 24 lRwyCqmCQkQc 35 (309)
T KOG2837|consen 24 LRWYCQMCQKQC 35 (309)
T ss_pred HHHHHHHHHHHh
Confidence 589999998754
No 414
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=34.39 E-value=1.6e+02 Score=21.85 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 210 LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (269)
Q Consensus 210 ~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l 243 (269)
.+.++|...+..|+.|..++.+++..-...++..
T Consensus 21 lSv~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AA 54 (59)
T PF06698_consen 21 LSVEELEERIALLEAEIARLEAAIAKKSASRAAA 54 (59)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777776666666555544443
No 415
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.37 E-value=6.7e+02 Score=27.66 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
+..+-..+..++..+......+...+..++
T Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 855 (1042)
T TIGR00618 826 LVQEEEQFLSRLEEKSATLGEITHQLLKYE 855 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444333333
No 416
>PRK09343 prefoldin subunit beta; Provisional
Probab=34.18 E-value=1.9e+02 Score=23.80 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
.++.+.++.++.+...+....+.+++...++...|.++-
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555556666665555555555543
No 417
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=34.14 E-value=2.7e+02 Score=23.00 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
..+.+++..|+..-..++.|=..|.-|...|..-|..+
T Consensus 18 ~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 18 GVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555556655555555554
No 418
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.10 E-value=3.9e+02 Score=24.91 Aligned_cols=54 Identities=13% Similarity=0.289 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCC-CCCCCcch--HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 150 TVLKRAFEIATSQ-TQVEQPLC--LECMR-------VLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 150 ~~l~~lFdILS~~-s~IDhPLC--~ECtd-------~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
.-++.+|.-+|+- ..+.-||= -.|++ .|++.++..+-..-+|...|..-|+.+-
T Consensus 89 ~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~vl 152 (240)
T cd07667 89 REYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILYSESMKNVL 152 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667666642 44555652 12333 3333344456666677777777777554
No 419
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=33.90 E-value=2.7e+02 Score=23.51 Aligned_cols=34 Identities=32% Similarity=0.287 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 220 ~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
..|++|-++....|+.-......++.-++.++.+
T Consensus 44 ~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e 77 (160)
T PF13094_consen 44 ELLQEEIEKEEAALERDYEYLQELEKNAKALERE 77 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 420
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=33.85 E-value=1.5e+02 Score=23.31 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAE 242 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~ 242 (269)
+..++.+.+.....+...|+.|++++.+
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le~qk~E 33 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELEAQKTE 33 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555544433
No 421
>PRK02119 hypothetical protein; Provisional
Probab=33.84 E-value=2.1e+02 Score=21.70 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
.+..||..-+-+...|++|-....+-..+|..++++.+.|
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333333444444444444444444444444333
No 422
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=33.83 E-value=3.2e+02 Score=25.20 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 216 ~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
.+|+++-+++-..|..-|+.+-+||.+...++..+-.+..
T Consensus 25 ~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~~ 64 (214)
T PF07795_consen 25 NEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLLEKL 64 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4467777777778888888888999998888888875543
No 423
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=33.57 E-value=3.5e+02 Score=24.19 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
..+.+.+..+..+...|.+.+.+...+..++..++
T Consensus 75 ~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~ 109 (194)
T PF15619_consen 75 ERLRKSQEQERELERKLKDKDEELLKTKDELKHLK 109 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555554444444444443
No 424
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=33.50 E-value=1.4e+02 Score=27.76 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 216 ~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
...|..++..-+.+...|+.|++|+..|......++..
T Consensus 214 ~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~ 251 (254)
T PF15458_consen 214 RESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQEL 251 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555443
No 425
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=33.43 E-value=2.5e+02 Score=29.25 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=6.1
Q ss_pred CHHHHHHHHHHHH
Q 024294 211 SEADFLKEKLKIE 223 (269)
Q Consensus 211 seeel~~El~~Le 223 (269)
..+++++.++.|+
T Consensus 192 ~~~~yk~~v~~i~ 204 (555)
T TIGR03545 192 DLEEYKKRLEAIK 204 (555)
T ss_pred hHHHHHHHHHHHH
Confidence 3444554444443
No 426
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=33.27 E-value=5.6e+02 Score=30.78 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024294 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e 205 (269)
++++.+.+++..+.+...|..-|+.+...
T Consensus 130 ~le~~~~ele~l~~~n~~l~~ql~ss~~~ 158 (1822)
T KOG4674|consen 130 LLERQKAELEALESENKDLNDQLKSSTKT 158 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888889999998888877654
No 427
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=32.88 E-value=2.1e+02 Score=23.35 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
...+..+.+.+.++++.|.++...+.+|++.|+..
T Consensus 52 ~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 52 VLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34455555566677777777777777777777665
No 428
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=32.66 E-value=2e+02 Score=24.50 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=7.7
Q ss_pred CCChhhhHHHHHHHHHH
Q 024294 142 NSGFHSTITVLKRAFEI 158 (269)
Q Consensus 142 ~~~ls~~i~~l~~lFdI 158 (269)
++.|.|.+.+...--|+
T Consensus 19 ~~dLahNL~v~~~R~dL 35 (126)
T PF07028_consen 19 NSDLAHNLRVTCYRSDL 35 (126)
T ss_pred HHHHHhhhhhhhhHhhH
Confidence 34455555544443333
No 429
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=32.48 E-value=1.3e+02 Score=30.31 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 176 ~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
+++.+|..++......+..... |+.|+.
T Consensus 322 ~Ii~ELe~Ei~~~~~~~~~~~~-l~~L~~ 349 (448)
T PF05761_consen 322 AIIPELEQEIEIWNSKKYRFEE-LQELEE 349 (448)
T ss_dssp EE-TTHHHHHHHHHHTHHHHHH-HHHHHH
T ss_pred EEehhhhhhhhhhhhcchhhhH-HHHHHH
Confidence 4578899999998888888777 776654
No 430
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=32.46 E-value=16 Score=29.80 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
|+.+--++.+++..||.+...+..++..+..+..+|..+
T Consensus 4 Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~ 42 (118)
T PF08286_consen 4 LDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQ 42 (118)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444455555555555555555555554444443
No 431
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.31 E-value=2.1e+02 Score=21.09 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
+++.++-+++-.-..++.+++++-.+.+.+++-++.+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555444433
No 432
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=32.17 E-value=2.2e+02 Score=22.62 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 235 ETEKQNAEVNAELKELELKSKRFKELE 261 (269)
Q Consensus 235 eLEkE~~~l~~EL~~le~E~~~Ld~eE 261 (269)
.+|+|...|...+...+.+...|.++-
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 556777777777777777777777653
No 433
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=32.11 E-value=2e+02 Score=28.29 Aligned_cols=32 Identities=31% Similarity=0.276 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
+..++..++.+...+..++..++.+...++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEE 58 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333
No 434
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=32.09 E-value=6e+02 Score=27.61 Aligned_cols=77 Identities=17% Similarity=0.202 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 180 KLDKEVDDVTRDIEAYEACLQRL---EGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d~Y~~fL~~L---~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
.|..+|..+..|||.-..=|+-. -..... ..-+....|+..|.+.-..|.++|.......+.+..++...+.....
T Consensus 475 dL~~ELqqLReERdRl~aeLqlSa~liqqeV~-~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqe 553 (739)
T PF07111_consen 475 DLSLELQQLREERDRLDAELQLSARLIQQEVG-RAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQE 553 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34666666666666655555411 101000 02233344455555555555555555555555555555444443333
Q ss_pred H
Q 024294 257 F 257 (269)
Q Consensus 257 L 257 (269)
.
T Consensus 554 s 554 (739)
T PF07111_consen 554 S 554 (739)
T ss_pred H
Confidence 3
No 435
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=32.00 E-value=5.3e+02 Score=29.18 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEA 194 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~ 194 (269)
+.|+..|-.+++.+.+|..+
T Consensus 403 ~~llKd~~~EIerLK~dl~A 422 (1041)
T KOG0243|consen 403 KTLLKDLYEEIERLKRDLAA 422 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665544
No 436
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=31.94 E-value=1.5e+02 Score=25.22 Aligned_cols=49 Identities=10% Similarity=0.214 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCC-------CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 149 ITVLKRAFEIATSQ-------TQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEA 197 (269)
Q Consensus 149 i~~l~~lFdILS~~-------s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~ 197 (269)
-..+.+||+..|+- ..--+|-..|=...-=..+=.+|+.+..=++.|..
T Consensus 11 eali~~lFa~VSalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~ 66 (131)
T PF04859_consen 11 EALIAKLFATVSALKAAYAQLQQAHSPYDPDKIQAADEAVVSELRRLSELKRRYRK 66 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35688899988861 12234555554443333444455555555555554
No 437
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=31.83 E-value=7.3e+02 Score=27.74 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 024294 171 LECMRVLSDKLDK 183 (269)
Q Consensus 171 ~ECtd~Lle~Ld~ 183 (269)
+-|.+-|+..||.
T Consensus 902 ~~~~e~~~~~l~s 914 (1259)
T KOG0163|consen 902 VKNYEKLVKRLDS 914 (1259)
T ss_pred HHHHHHHHHHhhh
Confidence 3444555554443
No 438
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=31.75 E-value=4.9e+02 Score=25.29 Aligned_cols=33 Identities=30% Similarity=0.311 Sum_probs=24.4
Q ss_pred CChhhhHHHHHHHHHHhcCCCCCCCcchHHHHH
Q 024294 143 SGFHSTITVLKRAFEIATSQTQVEQPLCLECMR 175 (269)
Q Consensus 143 ~~ls~~i~~l~~lFdILS~~s~IDhPLC~ECtd 175 (269)
+-+++.|.-+...-++.|.-++--.-||.=-..
T Consensus 53 ~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~ 85 (338)
T KOG3647|consen 53 SLIGDKIEELRKARELATDLTQRGTTICEMLSK 85 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 357888888888778887777777778864443
No 439
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=31.67 E-value=2.6e+02 Score=22.08 Aligned_cols=77 Identities=25% Similarity=0.368 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHhccc--------c------ccCC-HHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 024294 176 VLSDKLDKEVDDVTRDIEAYEACL--QRLEGEA--------R------DVLS-EADFLKEKLK-IEEEERKLEAAIEETE 237 (269)
Q Consensus 176 ~Lle~Ld~ql~~~~~E~d~Y~~fL--~~L~~e~--------~------~~~s-eeel~~El~~-Le~EE~~L~~eLeeLE 237 (269)
.|-+...++++..-+|++....|= +.|-.+. . +..+ .+.+..-+-. ++.+...|...|..++
T Consensus 14 ~l~~~~~~Ef~~I~~Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~ 93 (109)
T PF03980_consen 14 FLEENCKKEFEEILEERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELE 93 (109)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344556677888888888877653 3332211 0 1122 3333333333 4667777888899999
Q ss_pred HHHHHHHHHHHHHHH
Q 024294 238 KQNAEVNAELKELEL 252 (269)
Q Consensus 238 kE~~~l~~EL~~le~ 252 (269)
++...+..+|.++++
T Consensus 94 ~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 94 EENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999988888887764
No 440
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.51 E-value=2.9e+02 Score=25.63 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
-+++..+..|+.|-.+|+-.++++.-+..++.+..+++-.+...
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777776666666655544443
No 441
>PRK14162 heat shock protein GrpE; Provisional
Probab=31.47 E-value=1.9e+02 Score=26.07 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 216 ~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
..++..|+.+...|.+++.++......+.++..-++..
T Consensus 38 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR 75 (194)
T PRK14162 38 QNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNR 75 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555544433
No 442
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=31.29 E-value=3e+02 Score=29.71 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=17.2
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKI-EEEERKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 218 El~~L-e~EE~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
.|.+| ..|+.++.+|+++|+++.+.+..-|..-
T Consensus 417 rL~~L~~le~~~i~~E~~~l~~e~~~l~~~L~~~ 450 (735)
T TIGR01062 417 RLRHLAKLEEHAIIDEQSELEKERAILEKILKSE 450 (735)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 34444 3455555666666666655555544433
No 443
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=31.29 E-value=5e+02 Score=25.23 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
|.+.|.........|.+|+..++.+
T Consensus 260 L~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 260 LQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444433
No 444
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=31.27 E-value=3.3e+02 Score=23.10 Aligned_cols=23 Identities=30% Similarity=0.305 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 233 IEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 233 LeeLEkE~~~l~~EL~~le~E~~ 255 (269)
|..||.+.+..+.-|.....+.+
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333
No 445
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=31.13 E-value=91 Score=32.54 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~ 252 (269)
+..|++||+++..||+.||+++.---.||+.+-.
T Consensus 416 lgHLkKEEaeiqaElERLErvrnlHiRELKRi~N 449 (775)
T KOG1151|consen 416 LGHLKKEEAEIQAELERLERVRNLHIRELKRIHN 449 (775)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4456778888888888888777665556655443
No 446
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=31.05 E-value=4.5e+02 Score=28.54 Aligned_cols=20 Identities=20% Similarity=0.009 Sum_probs=12.8
Q ss_pred ceecccCCcceeeeccccch
Q 024294 21 RWVCQNCRHFLCIVGVDSYA 40 (269)
Q Consensus 21 ~~~Cq~C~~~l~i~g~d~~~ 40 (269)
+-.-+.|+..-++-.||.-.
T Consensus 121 ~~~s~~~~~~s~~e~~d~p~ 140 (811)
T KOG4364|consen 121 AVVSVGQRVSSGVENVDAPV 140 (811)
T ss_pred ccccccccccccccccCCcc
Confidence 33456777777776677544
No 447
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=31.02 E-value=1.2e+02 Score=22.47 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKE 249 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~ 249 (269)
|+.-+.|+++|.+.|++-...+.+++.
T Consensus 31 EqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455555554444444444
No 448
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=30.69 E-value=2e+02 Score=26.31 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024294 180 KLDKEVDDVTRDIEAYEACLQ 200 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d~Y~~fL~ 200 (269)
+|..+|..++.|+.+-+.-|.
T Consensus 48 elr~EL~kvEeEI~TLrqVLa 68 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLA 68 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666655555554
No 449
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=30.56 E-value=72 Score=33.76 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024294 234 EETEKQNAEVNAELKELELKSKRFKELEERYFFNI 268 (269)
Q Consensus 234 eeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre~ 268 (269)
+.|+++...++.+++.++ .+|+..|++||+.|
T Consensus 603 ~~l~~~i~~l~~~i~~~e---~rl~~~e~rl~~QF 634 (661)
T PRK06664 603 KGLDERIADNNKKIEEYE---KKLESKERKLKGKY 634 (661)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 344444444554544444 46677788888877
No 450
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=30.55 E-value=1.2e+02 Score=31.94 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~ 252 (269)
||..-.+|++|=+.|.+|.+.|..+|..+..
T Consensus 307 Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 307 LEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 3333333333333344444444444444333
No 451
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=30.50 E-value=1.1e+02 Score=23.89 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 236 TEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 236 LEkE~~~l~~EL~~le~E~~~Ld 258 (269)
+.+|.++|..+|+++++|+.++.
T Consensus 5 i~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 5 IQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455554444444433
No 452
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=30.50 E-value=7.5e+02 Score=27.02 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEA 197 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~ 197 (269)
......+..+|+.++.++..-..
T Consensus 588 ~~~~~el~eelE~le~eK~~Le~ 610 (769)
T PF05911_consen 588 TSEKKELEEELEKLESEKEELEM 610 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666654444
No 453
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=30.48 E-value=4.3e+02 Score=24.25 Aligned_cols=108 Identities=19% Similarity=0.333 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCC-----CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhccccc------------c
Q 024294 151 VLKRAFEIATSQ-----TQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAY----EACLQRLEGEARD------------V 209 (269)
Q Consensus 151 ~l~~lFdILS~~-----s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y----~~fL~~L~~e~~~------------~ 209 (269)
.+.++++++.++ ..+.-|- .=.+..|..|+.+|..+....-.- ..|.+++...... .
T Consensus 3 i~~r~~~~~~a~~~~~~dk~EDp~--~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~ 80 (225)
T COG1842 3 IFSRLKDLVKANINELLDKAEDPE--KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQ 80 (225)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666543 2345565 556666777777776665543321 1222222111000 0
Q ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 210 LSEADF----LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 210 ~seeel----~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
...++| ..++..|+..-..+.+.+..+....+.|...+.+|+.+..++...
T Consensus 81 ~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~ 135 (225)
T COG1842 81 AGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAK 135 (225)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011222 234555566556666666666666666666666666665555543
No 454
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=30.41 E-value=3.5e+02 Score=23.20 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 233 IEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 233 LeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
++.++.+.+.+.+|++.+.+..+..+
T Consensus 49 Ik~~ea~~e~~k~E~krL~~rkk~~e 74 (162)
T PF05565_consen 49 IKNLEADIEAIKAEIKRLQERKKSIE 74 (162)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 455
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=30.32 E-value=2.4e+02 Score=21.26 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 188 VTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 188 ~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
++.++.+...-|+.+... .+....++..|-.|-......|..+-.+..+|.+|+..++.|.+
T Consensus 3 Lea~~~~Lr~rLd~~~rk------~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRK------NSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666655432 12233455556666666666676666666666666666666533
No 456
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.31 E-value=4.7e+02 Score=29.77 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=10.8
Q ss_pred CcCCCCccccccccc
Q 024294 50 STMHGSSIHASNSVL 64 (269)
Q Consensus 50 ~~~~~s~~~~~~s~~ 64 (269)
-+++|...|++| +|
T Consensus 627 valdGtl~~ksG-lm 640 (1141)
T KOG0018|consen 627 VALDGTLIHKSG-LM 640 (1141)
T ss_pred EEeeeeEEeccc-ee
Confidence 357889999988 55
No 457
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=30.28 E-value=3e+02 Score=27.71 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (269)
Q Consensus 176 ~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~ 245 (269)
.=++.++.++..++.++.....-|..++. .....++..+++.++.+-..|.+.++-|+.....+..
T Consensus 163 vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~ 228 (475)
T PF10359_consen 163 VQIELIQERLDELEEQIEKHEEKLGELEL----NPDDPELKSDIEELERHISSLKERIEFLENMLEDLED 228 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33567888899999999888888887765 1234455566666666655566666555555544443
No 458
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=30.12 E-value=2.5e+02 Score=21.42 Aligned_cols=76 Identities=12% Similarity=0.233 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 024294 177 LSDKLDKEVDDVTRDIEA-YEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE-LELKS 254 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~-Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~-le~E~ 254 (269)
+|.+||.+......+.+. +..|++..... . .... +...+..+-+....++..+-.|+-.|...+-. +....
T Consensus 23 ~irelD~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~----~~~~~~~~I~~~~~~~~~l~deKv~lA~~~~d~v~~hi 95 (105)
T PF12998_consen 23 LIRELDAKSQDLLEELDQQIQKFIKNHGSP--S-LSPE----KRRELLKEIQEEYERALELSDEKVALAQQAYDLVDRHI 95 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCTTS-----S-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcccc--c-CChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777666666654 44454433220 0 0111 22223333344455555555555555554432 33444
Q ss_pred HHHHH
Q 024294 255 KRFKE 259 (269)
Q Consensus 255 ~~Ld~ 259 (269)
++||.
T Consensus 96 ~rLD~ 100 (105)
T PF12998_consen 96 RRLDQ 100 (105)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 45544
No 459
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=30.02 E-value=3.2e+02 Score=22.56 Aligned_cols=53 Identities=11% Similarity=0.192 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 191 DIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (269)
Q Consensus 191 E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~ 249 (269)
+...|..|+.+|... +......+..++.+-......+.+..+++..++.-...
T Consensus 65 ~l~~~~~fl~~L~~~------i~~q~~~v~~~~~~ve~~r~~~~ea~~~~k~~ekLker 117 (146)
T PRK07720 65 EIRHYQQFVTNLERT------IDHYQLLVMQAREQMNRKQQDLTEKNIEVKKYEKMKEK 117 (146)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777542 23333444445555555555555555555555544443
No 460
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=30.00 E-value=3.1e+02 Score=22.48 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
.+....+...++.|++....+..++..++.+...+.+.
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 130 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQE 130 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666666666666665555443
No 461
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=29.96 E-value=3.2e+02 Score=24.54 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEA 197 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~ 197 (269)
+..++.++..++.+.+.+..
T Consensus 73 ~~~~~~~~~~~~~~~~r~~~ 92 (322)
T TIGR01730 73 LAAAEAQLELAQRSFERAER 92 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344445555444444433
No 462
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=29.96 E-value=20 Score=28.76 Aligned_cols=32 Identities=16% Similarity=0.359 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024294 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (269)
Q Consensus 174 td~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e 205 (269)
.|..|+.|..++..+..+......-+..|+..
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~ 54 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQ 54 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57788888888888888888888877777654
No 463
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=29.93 E-value=3.8e+02 Score=23.44 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
.+++.+|.-+.++|..|...-.+||.....+..-+...+
T Consensus 87 ~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE 125 (159)
T PF05384_consen 87 HELQVRLAMLREREKQLRERRDELERRLRNLEETIERAE 125 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777777777777777666666655544
No 464
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=29.89 E-value=5.5e+02 Score=28.74 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=26.3
Q ss_pred hcCCCCCCCcchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 159 ATSQTQVEQPLCLECMR-----VLSDKLDKEVDDVTRDIEAYEACLQ 200 (269)
Q Consensus 159 LS~~s~IDhPLC~ECtd-----~Lle~Ld~ql~~~~~E~d~Y~~fL~ 200 (269)
||++.+.=.|+=..|+. .-++.+-+.++...++.+++..-|.
T Consensus 237 Lss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~ 283 (1265)
T KOG0976|consen 237 LSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLG 283 (1265)
T ss_pred HHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666788888873 3344455566666666666665554
No 465
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=29.86 E-value=5e+02 Score=24.76 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
+..++.+|++..+.+..+|..|..|..+
T Consensus 219 ~~ae~seLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 219 YVAEKSELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4455566666666666666666665543
No 466
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=29.68 E-value=5.6e+02 Score=25.28 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARD-VL-SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (269)
Q Consensus 176 ~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~-~~-seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~ 245 (269)
...+.|++|+..++.+-+.-..-|...+....- .+ ....+..++..+..+...+..++..++.....+.+
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKR 232 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666544444433322110 11 12223344555555555555555555444444443
No 467
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=29.61 E-value=1.5e+02 Score=26.56 Aligned_cols=37 Identities=32% Similarity=0.483 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEETE--KQNAEVNAELKELELK 253 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLE--kE~~~l~~EL~~le~E 253 (269)
.++.+|+.|-.+|..+++.-- ..+.++..||++++.|
T Consensus 182 ~~i~~L~kei~~L~~~~~kEkq~nrkveln~elk~l~~e 220 (221)
T PF14335_consen 182 EQIEKLEKEIAKLKKKIKKEKQFNRKVELNTELKKLKKE 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 445555666555555555221 4455666666666554
No 468
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=29.60 E-value=2e+02 Score=26.02 Aligned_cols=46 Identities=22% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe 262 (269)
+++..|..+-.+|.+.+..|.++...+++||+.|..-+.--+-+|+
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~ 124 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEE 124 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
No 469
>PRK14148 heat shock protein GrpE; Provisional
Probab=29.58 E-value=2.9e+02 Score=24.96 Aligned_cols=34 Identities=12% Similarity=0.301 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
++..++.+...|.++++++......+.++..-++
T Consensus 41 e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~r 74 (195)
T PRK14148 41 QLERAKDTIKELEDSCDQFKDEALRAKAEMENIR 74 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555544444444444444444
No 470
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=29.33 E-value=7.6e+02 Score=26.73 Aligned_cols=44 Identities=32% Similarity=0.362 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
+.+..|+.+-....+.|+.++....++..+|........+++++
T Consensus 566 ~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE 609 (698)
T KOG0978|consen 566 QSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEE 609 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555544444444444444444444443
No 471
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.31 E-value=1.5e+02 Score=31.57 Aligned_cols=40 Identities=30% Similarity=0.321 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eE 261 (269)
|+++...+...|+.|.+++.+=.+|+..+..+.+.|-.+.
T Consensus 101 Lke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l 140 (660)
T KOG4302|consen 101 LKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEEL 140 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666677777777777777777776666665543
No 472
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=29.28 E-value=2.5e+02 Score=21.23 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~ 252 (269)
+.+|......+...+..+-+..+.+..++..++.
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443
No 473
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=29.16 E-value=2.4e+02 Score=22.45 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
.+.+++++-++|.++.+.+..|.+..++|++-.+...+
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqk 61 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQK 61 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=29.05 E-value=71 Score=32.58 Aligned_cols=30 Identities=33% Similarity=0.529 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024294 236 TEKQNAEVNAELKELELKSKRFKELEERYFFNI 268 (269)
Q Consensus 236 LEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre~ 268 (269)
+.++...++.+++.+. ++|+..|++||+.|
T Consensus 427 l~~~i~~l~~~i~~~~---~rl~~~e~~~~~qf 456 (483)
T COG1345 427 LNKQIKSLDKDIKSLD---KRLEAAEERYKTQF 456 (483)
T ss_pred hhHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
No 475
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=28.97 E-value=4.1e+02 Score=23.72 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 187 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
++..|......-|...-.. ...+++.|+.+|+.+. +.|+.+...-..+...-.-++.+++.+.+.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~-----~~~eL~~eI~~L~~~i----~~le~~~~~~k~LrnKa~~L~~eL~~F~~~ 166 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQ-----TKNELEDEIKQLEKEI----QRLEEIQSKSKTLRNKANWLESELERFQEQ 166 (171)
T ss_dssp --------HHHHHHHHHHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=28.94 E-value=3e+02 Score=24.64 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 024294 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFFNIY 269 (269)
Q Consensus 216 ~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre~~ 269 (269)
..+|..++...+-+..=+.-|+.-+..|-.|+.++..+..++.++=++.|.++|
T Consensus 9 K~eL~~lk~~L~~a~rg~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~ 62 (201)
T PRK02195 9 KNSLKKQKKQLKMLERYLPTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIE 62 (201)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=28.81 E-value=3e+02 Score=21.89 Aligned_cols=73 Identities=23% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
+.|...-..+....-.|..||+.-.. ...................+++...+..+|..++.+...+.
T Consensus 35 ~~L~~~e~~l~~~~~~f~~flken~~-------------k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e 101 (126)
T PF13863_consen 35 EELEKKEQELEEDVIKFDKFLKENEA-------------KRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLE 101 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHh
Q 024294 259 ELEERY 264 (269)
Q Consensus 259 ~eEe~y 264 (269)
..=..|
T Consensus 102 ~~l~~~ 107 (126)
T PF13863_consen 102 EKLEEY 107 (126)
T ss_pred HHHHHH
No 478
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=28.77 E-value=39 Score=27.68 Aligned_cols=15 Identities=33% Similarity=0.784 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHH
Q 024294 170 CLECMRVLSDKLDKE 184 (269)
Q Consensus 170 C~ECtd~Lle~Ld~q 184 (269)
|.+|++.|.+.|.++
T Consensus 21 C~~cA~Al~~~L~~~ 35 (100)
T PF15643_consen 21 CVECASALKQFLKQA 35 (100)
T ss_pred hHHHHHHHHHHHHHC
No 479
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=28.66 E-value=4.9e+02 Score=27.51 Aligned_cols=82 Identities=29% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------------ccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGE----------------------ARDVLSEADFLKEKLKIEEEERKLEAAIEE 235 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e----------------------~~~~~seeel~~El~~Le~EE~~L~~eLee 235 (269)
+..|+.++..++.|.+....-+..|+.. .+...........+..|++|-++|++.|..
T Consensus 505 ~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~ 584 (722)
T PF05557_consen 505 LNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRS 584 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HH-------------------HHHHHHHHHHHHHHHHHHHHHH
Q 024294 236 TE-------------------KQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 236 LE-------------------kE~~~l~~EL~~le~E~~~Ld~ 259 (269)
|+ ++..++.+++..++....+|.+
T Consensus 585 le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLke 627 (722)
T PF05557_consen 585 LEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKE 627 (722)
T ss_dssp HTTTT----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
No 480
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=28.63 E-value=6.4e+02 Score=29.16 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 024294 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL- 252 (269)
Q Consensus 174 td~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~- 252 (269)
+-.+++.-..++....+.-..+..-+++......+ ...+++.++..|+.....+..+|..++..+....+.+...+.
T Consensus 589 ~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e--~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~ 666 (1317)
T KOG0612|consen 589 KLSLLEESKSKLSKENKKLRSELEKERRQRTEISE--IIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKE 666 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhcC
Q 024294 253 KSKRFKELEERYFFNIY 269 (269)
Q Consensus 253 E~~~Ld~eEe~yWre~~ 269 (269)
..+..-+-+-++|.+.+
T Consensus 667 ~~e~~~e~~lk~~q~~~ 683 (1317)
T KOG0612|consen 667 ALEIKLERKLKMLQNEL 683 (1317)
T ss_pred HHHHHHHHHHHHHHHHH
No 481
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=28.47 E-value=6.4e+02 Score=25.59 Aligned_cols=93 Identities=18% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHH---H-----------HHHHHHHHHHHHHHHHHHHHH
Q 024294 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLK---E-----------KLKIEEEERKLEAAIEETEKQ 239 (269)
Q Consensus 174 td~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~---E-----------l~~Le~EE~~L~~eLeeLEkE 239 (269)
.+.+++.+...++..+.|-..|+..-.++-..... -++.|+. . +..|..|-.-+..++..++.+
T Consensus 219 ~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEk--lI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Q 296 (511)
T PF09787_consen 219 LQEQLELLKAEGESEEAELQQYKQKAQRILQSKEK--LIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQ 296 (511)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024294 240 NAEVNAELKELELKSKRFKELEERYFFNI 268 (269)
Q Consensus 240 ~~~l~~EL~~le~E~~~Ld~eEe~yWre~ 268 (269)
...+..|+..++.+...-.+..+++-++.
T Consensus 297 i~~l~~e~~d~e~~~~~~~~~~~~~~~~~ 325 (511)
T PF09787_consen 297 IEQLRAELQDLEAQLEGEQESFREQPQEL 325 (511)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
No 482
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.43 E-value=7.9e+02 Score=26.66 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDV-LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~-~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
.+.+...+..+.++++-|....+.+.+...+. .+.++...++..-++.-..+.-+++.|..+.....+.+...+++..-
T Consensus 421 ~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~ 500 (716)
T KOG4593|consen 421 EKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESEL 500 (716)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHhhhh
Q 024294 257 FKELEERYFFN 267 (269)
Q Consensus 257 Ld~eEe~yWre 267 (269)
+++-=+.|-++
T Consensus 501 ~~e~i~~~~ke 511 (716)
T KOG4593|consen 501 LREKIEQYLKE 511 (716)
T ss_pred hhhHHHHHHHH
No 483
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=28.15 E-value=4.3e+02 Score=23.55 Aligned_cols=54 Identities=22% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFFNIY 269 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre~~ 269 (269)
......-..+|+.|-++|..++..||. +....+.++.+...|+.+=+.|=..|.
T Consensus 115 ~~~Vd~~~~eL~~eI~~L~~~i~~le~----~~~~~k~LrnKa~~L~~eL~~F~~~yL 168 (171)
T PF04799_consen 115 CQQVDQTKNELEDEIKQLEKEIQRLEE----IQSKSKTLRNKANWLESELERFQEQYL 168 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc
No 484
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=28.12 E-value=6e+02 Score=30.55 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
...+..+..+|..+..++..|..-+.++.. ....+..+...+.++-+.|+..|+.+.++.+.+..++..+..+.
T Consensus 79 ~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~------~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql 152 (1822)
T KOG4674|consen 79 RNELSDLRNELEQLSSERSNLSWEIDALKL------ENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQL 152 (1822)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 024294 255 KRFKE 259 (269)
Q Consensus 255 ~~Ld~ 259 (269)
..+..
T Consensus 153 ~ss~~ 157 (1822)
T KOG4674|consen 153 KSSTK 157 (1822)
T ss_pred HHHHH
No 485
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=28.11 E-value=4.9e+02 Score=24.16 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
....+...+..+.+=++.|..--+..+.-.....+..++++-..++..-...-...|+.+...+..-..++...=...++
T Consensus 121 ~~~~~~~~~~~~~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~ 200 (269)
T cd07673 121 AVQNIQSITQALQKSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATESYKLYVEKYALAKADFEQKMTETAQKFQD 200 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhcC
Q 024294 257 FKELEERYFFNIY 269 (269)
Q Consensus 257 Ld~eEe~yWre~~ 269 (269)
++++=-.|-++++
T Consensus 201 ~Ee~Ri~~~k~~l 213 (269)
T cd07673 201 IEETHLIRIKEII 213 (269)
T ss_pred HHHHHHHHHHHHH
No 486
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=28.10 E-value=5.6e+02 Score=24.79 Aligned_cols=86 Identities=26% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDV--------LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~--------~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~ 249 (269)
+.+|..++.....+...|..=+..|..+.... ...+++.++...+-++--.+..++.++..+...+..+|..
T Consensus 160 ~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre 239 (294)
T COG1340 160 LKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRE 239 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 024294 250 LELKSKRFKELEER 263 (269)
Q Consensus 250 le~E~~~Ld~eEe~ 263 (269)
++.....|...+..
T Consensus 240 ~~k~ik~l~~~~~~ 253 (294)
T COG1340 240 LEKKIKALRAKEKA 253 (294)
T ss_pred HHHHHHHHHHHHHH
No 487
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=28.10 E-value=2.8e+02 Score=25.17 Aligned_cols=45 Identities=36% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER 263 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~ 263 (269)
...+..+-..+..++.+.+++.+.+++.++.++.+..+++..+++
T Consensus 65 ~da~~dq~~~~q~e~~~~lk~~a~~~E~lk~lE~~kae~k~~~e~ 109 (192)
T COG3334 65 ADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLEEE 109 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=28.02 E-value=2.8e+02 Score=21.79 Aligned_cols=45 Identities=27% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
......-...+......+.+++.+++.+..++..++..++.+..+
T Consensus 76 ~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~ 120 (120)
T PF11740_consen 76 EAAQEEAEEELEAARAELEQERAAAEAELAEAEAQAEELEAELAE 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 489
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.90 E-value=3.6e+02 Score=28.55 Aligned_cols=79 Identities=15% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 177 LSDKLDKEVDDVTRDIEAYEAC-----------------LQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQ 239 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~Y~~f-----------------L~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE 239 (269)
|++.|+.+-=....+...|..- +++|.....- ++.+..+++...+.|-++|.+.+..|..+
T Consensus 276 LlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~~er~IerLkeqr~r--derE~~EeIe~~~ke~kdLkEkv~~lq~~ 353 (654)
T KOG4809|consen 276 LLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMKVERIIERLKEQRER--DERERLEEIESFRKENKDLKEKVNALQAE 353 (654)
T ss_pred HHHHHHHhhcccccchhhHHHHHHhHHHHHhhhchHHHHHHHhcchhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024294 240 NAEVNAELKELELKSKRF 257 (269)
Q Consensus 240 ~~~l~~EL~~le~E~~~L 257 (269)
..+-.+.+..++++...|
T Consensus 354 l~eke~sl~dlkehassL 371 (654)
T KOG4809|consen 354 LTEKESSLIDLKEHASSL 371 (654)
T ss_pred HHHHHHHHHHHHHHHHHH
No 490
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=27.74 E-value=6.2e+02 Score=25.70 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLK----IEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~----Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
..|+.|-..++..-++-..--++..++... .+..++.+-.. ..+|...|..+=+.|.++.++-..|+++++.+.
T Consensus 302 s~LqrQKle~e~~l~a~qeakek~~KEAqa--reaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql~~q~ 379 (442)
T PF06637_consen 302 SDLQRQKLEAEQGLQASQEAKEKAGKEAQA--REAKLQAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQLKMQL 379 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 024294 255 K 255 (269)
Q Consensus 255 ~ 255 (269)
.
T Consensus 380 ~ 380 (442)
T PF06637_consen 380 A 380 (442)
T ss_pred H
No 491
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.63 E-value=2.5e+02 Score=22.18 Aligned_cols=39 Identities=28% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
.+.+.+.+..|+.+-..+..+|..+.++...+...+..+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 492
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=27.62 E-value=2.1e+02 Score=22.68 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
+.|+.|.+|-.....+|+..+.....+...++.++.+.+.
T Consensus 1 k~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK 40 (86)
T PF12958_consen 1 KTLEELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERK 40 (86)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.59 E-value=3.7e+02 Score=22.50 Aligned_cols=80 Identities=16% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 174 td~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
+...++.-++++..+-.|...|...-+..-.++-.. ..-.++++-+.+.+.++.|++.+.=++......|.-
T Consensus 32 ~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a--------~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~n 103 (114)
T KOG3501|consen 32 AKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAA--------VRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQN 103 (114)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHH--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 024294 254 SKRFKELE 261 (269)
Q Consensus 254 ~~~Ld~eE 261 (269)
+++|-+.+
T Consensus 104 Lrellqs~ 111 (114)
T KOG3501|consen 104 LRELLQSR 111 (114)
T ss_pred HHHHHHhh
No 494
>PF08785 Ku_PK_bind: Ku C terminal domain like; InterPro: IPR014893 The non-homologous end joining (NHEJ) pathway is one method by which double stranded breaks in chromosomal DNA are repaired. Ku is a component of a multi-protein complex that is involved in the NHEJ. Ku has affinity for DNA ends and recruits the DNA-dependent protein kinase catalytic subunit (DNA-PKcs). This domain is found at the C-terminal of Ku which binds to DNA-PKcs []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 1RW2_A 1Q2Z_A 3ISM_C.
Probab=27.57 E-value=45 Score=27.23 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 153 KRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 153 ~~lFdILS~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
..|+.++....+..|+-+.+|...|-+..-..=+ -+.|..||++|+.
T Consensus 29 ~vI~~Lv~~s~~~~y~kalecl~~lR~~~i~~~e-----p~~yN~Fl~~LK~ 75 (120)
T PF08785_consen 29 NVIEQLVSDSGDQNYDKALECLRALREECIEEEE-----PDEYNDFLRKLKK 75 (120)
T ss_dssp HHHHHHHHCSHCHHHHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHH
No 495
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=27.49 E-value=1.2e+02 Score=29.97 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER 263 (269)
Q Consensus 221 ~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~ 263 (269)
...++.+.|.++++.|.+++.+|++.|..+++.++.|.+..+.
T Consensus 141 ~~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lted~~n 183 (354)
T KOG2577|consen 141 GVPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLTEDVEN 183 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhc
No 496
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.49 E-value=6e+02 Score=24.96 Aligned_cols=110 Identities=15% Similarity=0.240 Sum_probs=0.0
Q ss_pred CCCCCCCChhhhHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHH
Q 024294 137 PMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFL 216 (269)
Q Consensus 137 ~~~~~~~~ls~~i~~l~~lFdILS~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~ 216 (269)
....+....-.|+..+..+..-+++ ...=+..-|+.|..++..+-..+.....||..--..... .-...+
T Consensus 210 ~~~~d~kDWR~hleqm~~~~~~I~~--------~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~--eYr~~~ 279 (359)
T PF10498_consen 210 TIRADAKDWRSHLEQMKQHKKSIES--------ALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQ--EYRSAQ 279 (359)
T ss_pred eccCCcchHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
.++..++++=+.+-.-+.++-+++++|..+|++.+.+.++
T Consensus 280 ~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 280 DELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=27.36 E-value=4.4e+02 Score=23.32 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 024294 171 LECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEE-TEKQNAEVNAELKE 249 (269)
Q Consensus 171 ~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLee-LEkE~~~l~~EL~~ 249 (269)
..+....+..--++.-+.+..+..+...+..|+. ...+|..++..++.....+.+...+ ...+.+....|+..
T Consensus 101 ~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~------e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~ 174 (189)
T PF10211_consen 101 QTLYESSIAFGMRKALQAEQGKQELEEEIEELEE------EKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDF 174 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 024294 250 LELKSKRFKEL 260 (269)
Q Consensus 250 le~E~~~Ld~e 260 (269)
++.....|+.+
T Consensus 175 lk~~~~ql~~~ 185 (189)
T PF10211_consen 175 LKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHH
No 498
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=27.34 E-value=4.8e+02 Score=23.74 Aligned_cols=91 Identities=12% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 024294 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETE--------KQNAEVNA 245 (269)
Q Consensus 174 td~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLE--------kE~~~l~~ 245 (269)
.|.=+-.|..++.....++..-.+-++.|.. ..+.++++++++.|.++=+.-...|+.+. .+.+++..
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s----~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~ 159 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSS----ALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYR 159 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 024294 246 ELKELELKSKRFKELEERYFFNI 268 (269)
Q Consensus 246 EL~~le~E~~~Ld~eEe~yWre~ 268 (269)
+-...-.+-+....--...|..+
T Consensus 160 ~y~~~~~~wrk~krmf~ei~d~~ 182 (201)
T KOG4603|consen 160 EYQKYCKEWRKRKRMFREIIDKL 182 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=27.26 E-value=7.3e+02 Score=25.92 Aligned_cols=72 Identities=13% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~ 252 (269)
+++-..+..++.++..+++.+..=...... ....+.+.+...+++...+..+|+.+......+..||..-+.
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~------Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~ 483 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHADSKAVHFYA------ECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRR 483 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 500
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=27.26 E-value=4.5e+02 Score=26.16 Aligned_cols=62 Identities=31% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEE------RKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE------~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
+..|-+++..++.=..+|..|.+.... .+..+.+..++ .-+..||.+++.....++++|+.|
T Consensus 35 ~~~lske~a~l~~iv~~~~~~~~~~~~-----------l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 35 YRKLSKEYAELEPIVEKYREYKKAQED-----------LEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!