Query 024294
Match_columns 269
No_of_seqs 137 out of 197
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 05:45:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8t_A Beclin-1; autophagy, AT 99.0 8.6E-10 2.9E-14 87.0 9.2 58 211-268 5-62 (96)
2 2p1l_B Beclin 1; apoptosis, au 98.7 6.4E-09 2.2E-13 66.6 1.8 26 143-168 6-31 (31)
3 3q8t_A Beclin-1; autophagy, AT 90.8 3.3 0.00011 32.0 10.7 42 212-253 20-61 (96)
4 2v66_B Nuclear distribution pr 90.1 5 0.00017 32.1 11.5 69 179-249 6-74 (111)
5 3na7_A HP0958; flagellar bioge 90.0 4.4 0.00015 35.7 12.3 8 215-222 95-102 (256)
6 3oja_B Anopheles plasmodium-re 89.4 2.6 8.9E-05 40.4 11.1 22 230-251 536-557 (597)
7 3oja_B Anopheles plasmodium-re 88.9 4.2 0.00014 39.0 12.1 29 175-203 462-490 (597)
8 2dfs_A Myosin-5A; myosin-V, in 88.6 0.91 3.1E-05 48.4 7.8 13 181-193 933-945 (1080)
9 1ic2_A Tropomyosin alpha chain 87.8 6.1 0.00021 29.2 9.9 71 179-255 2-72 (81)
10 2v71_A Nuclear distribution pr 87.6 11 0.00038 32.7 12.7 31 175-205 16-46 (189)
11 3hnw_A Uncharacterized protein 87.3 7.3 0.00025 31.9 11.0 43 216-258 88-130 (138)
12 3ajw_A Flagellar FLIJ protein; 87.0 7.6 0.00026 30.6 10.7 49 219-267 76-124 (150)
13 2v71_A Nuclear distribution pr 86.3 8.9 0.00031 33.3 11.5 68 182-251 62-129 (189)
14 3hnw_A Uncharacterized protein 85.6 13 0.00043 30.5 11.6 40 215-254 94-133 (138)
15 3mq9_A Bone marrow stromal ant 85.3 8.2 0.00028 36.1 11.7 100 154-258 360-470 (471)
16 3nmd_A CGMP dependent protein 84.7 3.3 0.00011 30.9 6.8 47 211-257 20-66 (72)
17 3u1c_A Tropomyosin alpha-1 cha 83.8 13 0.00045 28.6 12.1 26 178-203 4-29 (101)
18 3na7_A HP0958; flagellar bioge 83.0 12 0.00043 32.8 11.2 39 218-256 91-129 (256)
19 1wt6_A Myotonin-protein kinase 82.0 6.4 0.00022 29.9 7.6 44 215-258 29-72 (81)
20 2w83_C C-JUN-amino-terminal ki 81.7 11 0.00038 28.4 8.7 72 179-256 5-76 (77)
21 2dfs_A Myosin-5A; myosin-V, in 81.3 14 0.00049 39.3 12.7 18 234-251 1026-1043(1080)
22 1ci6_A Transcription factor AT 81.1 6.5 0.00022 28.0 7.1 37 223-259 22-58 (63)
23 2v66_B Nuclear distribution pr 81.1 19 0.00066 28.7 11.5 70 173-255 32-101 (111)
24 3u1c_A Tropomyosin alpha-1 cha 81.0 17 0.00058 28.0 10.8 39 220-258 61-99 (101)
25 3oja_A Leucine-rich immune mol 79.6 23 0.00077 33.2 12.4 64 190-253 414-478 (487)
26 2zqm_A Prefoldin beta subunit 79.0 19 0.00065 27.4 12.3 77 178-257 22-110 (117)
27 3mq7_A Bone marrow stromal ant 78.6 25 0.00085 28.5 10.8 29 232-260 72-100 (121)
28 1m1j_C Fibrinogen gamma chain; 78.1 40 0.0014 32.2 13.7 80 178-257 43-124 (409)
29 3oja_A Leucine-rich immune mol 77.0 21 0.00073 33.4 11.4 12 188-199 365-376 (487)
30 3vkg_A Dynein heavy chain, cyt 76.9 18 0.00062 43.0 12.7 35 219-253 2016-2050(3245)
31 1l8d_A DNA double-strand break 76.7 22 0.00077 26.9 11.9 75 181-255 22-102 (112)
32 2jee_A YIIU; FTSZ, septum, coi 76.3 18 0.00063 27.4 8.6 45 212-256 22-66 (81)
33 3tnu_A Keratin, type I cytoske 75.9 11 0.00037 30.2 7.8 90 179-268 13-107 (131)
34 3tnu_B Keratin, type II cytosk 75.8 25 0.00086 27.9 9.9 73 183-268 29-105 (129)
35 1ik9_A DNA repair protein XRCC 75.8 26 0.00089 30.6 10.8 10 150-159 121-130 (213)
36 3ghg_A Fibrinogen alpha chain; 75.8 7.8 0.00027 38.6 8.0 40 214-253 114-153 (562)
37 3u59_A Tropomyosin beta chain; 75.5 25 0.00085 26.9 10.3 26 178-203 4-29 (101)
38 3qh9_A Liprin-beta-2; coiled-c 74.7 15 0.00051 27.9 7.6 11 185-195 4-14 (81)
39 1hjb_A Ccaat/enhancer binding 73.4 12 0.0004 28.7 6.9 38 222-259 34-71 (87)
40 2l5g_B Putative uncharacterize 72.8 9.8 0.00033 25.6 5.5 32 228-259 6-37 (42)
41 3u59_A Tropomyosin beta chain; 72.7 29 0.001 26.4 12.0 31 227-257 68-98 (101)
42 2ve7_A Kinetochore protein HEC 71.3 7.8 0.00027 35.5 6.6 9 192-200 152-160 (315)
43 1fxk_A Prefoldin; archaeal pro 71.2 30 0.001 25.9 11.1 74 179-255 18-103 (107)
44 3o0z_A RHO-associated protein 70.5 33 0.0011 29.2 9.8 24 180-203 10-33 (168)
45 1t2k_D Cyclic-AMP-dependent tr 70.5 15 0.00052 25.6 6.6 34 226-259 24-57 (61)
46 4etp_A Kinesin-like protein KA 70.4 12 0.00042 35.3 7.9 48 212-259 5-52 (403)
47 3mq7_A Bone marrow stromal ant 69.6 43 0.0015 27.1 12.9 30 219-248 73-102 (121)
48 3nmd_A CGMP dependent protein 69.4 25 0.00085 26.1 7.7 46 219-264 21-66 (72)
49 3i00_A HIP-I, huntingtin-inter 69.2 26 0.00089 28.1 8.5 20 175-194 14-33 (120)
50 2fxo_A Myosin heavy chain, car 69.1 41 0.0014 26.7 11.0 35 223-257 82-116 (129)
51 3iv1_A Tumor susceptibility ge 68.7 35 0.0012 25.7 10.0 38 222-259 37-74 (78)
52 3iv1_A Tumor susceptibility ge 68.1 33 0.0011 25.8 8.2 65 175-245 10-74 (78)
53 1deq_A Fibrinogen (alpha chain 67.8 31 0.001 33.0 9.9 58 143-205 63-121 (390)
54 1gu4_A CAAT/enhancer binding p 67.4 16 0.00054 27.3 6.4 37 222-258 34-70 (78)
55 3u06_A Protein claret segregat 67.1 18 0.00061 34.4 8.3 46 213-258 6-51 (412)
56 1g6u_A Domain swapped dimer; d 66.7 26 0.00089 23.5 6.9 20 228-247 24-43 (48)
57 1gk4_A Vimentin; intermediate 66.4 34 0.0012 25.3 8.1 19 185-203 3-21 (84)
58 2jee_A YIIU; FTSZ, septum, coi 65.8 41 0.0014 25.4 10.1 11 178-188 8-18 (81)
59 3plt_A Sphingolipid long chain 65.5 68 0.0023 28.6 11.2 28 177-204 74-101 (234)
60 4dzn_A Coiled-coil peptide CC- 64.9 15 0.00053 22.9 4.8 16 242-257 13-28 (33)
61 2ocy_A RAB guanine nucleotide 64.5 45 0.0015 28.0 9.3 11 187-197 38-48 (154)
62 3swk_A Vimentin; cytoskeleton, 64.3 43 0.0015 25.1 8.6 73 178-256 2-81 (86)
63 2wt7_A Proto-oncogene protein 63.7 23 0.00078 24.9 6.4 32 228-259 27-58 (63)
64 3ol1_A Vimentin; structural ge 62.9 54 0.0018 25.8 12.1 78 175-258 19-103 (119)
65 3s9g_A Protein hexim1; cyclin 62.2 55 0.0019 25.8 8.7 55 211-266 31-92 (104)
66 3ghg_A Fibrinogen alpha chain; 61.3 30 0.001 34.5 8.7 29 175-203 88-116 (562)
67 3a7p_A Autophagy protein 16; c 60.7 56 0.0019 27.4 9.2 26 215-240 101-126 (152)
68 1x8y_A Lamin A/C; structural p 60.4 50 0.0017 24.6 9.9 62 181-251 15-76 (86)
69 1go4_E MAD1 (mitotic arrest de 59.9 48 0.0016 25.9 8.1 36 166-205 6-41 (100)
70 3mq9_A Bone marrow stromal ant 59.6 64 0.0022 29.9 10.5 23 235-257 433-455 (471)
71 1l8d_A DNA double-strand break 59.3 55 0.0019 24.7 10.3 34 228-261 68-101 (112)
72 1ses_A Seryl-tRNA synthetase; 59.0 44 0.0015 31.6 9.4 25 180-204 32-56 (421)
73 2eqb_B RAB guanine nucleotide 58.9 48 0.0016 25.8 7.9 27 178-204 7-33 (97)
74 1jnm_A Proto-oncogene C-JUN; B 58.6 14 0.00047 25.9 4.4 32 227-258 25-56 (62)
75 3ljm_A Coil Ser L9C; de novo d 58.4 15 0.00051 22.7 3.9 25 234-258 4-28 (31)
76 2wt7_B Transcription factor MA 58.4 26 0.00088 27.0 6.2 40 218-257 49-88 (90)
77 2dq0_A Seryl-tRNA synthetase; 58.1 66 0.0023 30.8 10.5 19 229-247 81-99 (455)
78 2aze_B Transcription factor E2 58.1 22 0.00075 27.8 5.9 33 228-260 10-42 (106)
79 2p22_A Suppressor protein STP2 57.5 89 0.003 26.6 10.3 42 216-257 48-89 (174)
80 3m9b_A Proteasome-associated A 57.3 14 0.00049 33.3 5.3 38 214-251 58-95 (251)
81 2efr_A General control protein 56.8 86 0.0029 26.2 12.6 11 178-188 2-12 (155)
82 3qne_A Seryl-tRNA synthetase, 56.8 62 0.0021 31.6 10.1 18 230-247 84-101 (485)
83 3bbp_D GRIP and coiled-coil do 56.7 7.5 0.00025 28.8 2.8 52 212-263 17-68 (71)
84 1wle_A Seryl-tRNA synthetase; 55.6 66 0.0023 31.4 10.2 11 181-191 75-85 (501)
85 3bas_A Myosin heavy chain, str 55.6 57 0.002 24.4 7.8 45 213-257 38-82 (89)
86 1t3j_A Mitofusin 1; coiled coi 55.5 50 0.0017 25.7 7.5 26 243-268 69-94 (96)
87 4dzn_A Coiled-coil peptide CC- 55.1 29 0.00099 21.7 4.8 24 228-251 6-29 (33)
88 3ra3_B P2F; coiled coil domain 54.5 11 0.00038 22.8 2.8 17 240-256 9-25 (28)
89 1nlw_A MAD protein, MAX dimeri 54.3 18 0.0006 26.9 4.6 31 219-249 49-79 (80)
90 1ci6_A Transcription factor AT 53.9 45 0.0015 23.5 6.5 34 213-246 26-59 (63)
91 1g6u_A Domain swapped dimer; d 53.6 40 0.0014 22.6 5.7 26 231-256 20-45 (48)
92 3a7p_A Autophagy protein 16; c 53.3 80 0.0027 26.5 8.9 45 217-261 82-126 (152)
93 1gd2_E Transcription factor PA 53.2 28 0.00097 25.4 5.4 23 233-255 45-67 (70)
94 2xv5_A Lamin-A/C; structural p 52.8 66 0.0022 23.6 8.6 51 188-251 3-53 (74)
95 3iox_A AGI/II, PA; alpha helix 52.8 1E+02 0.0035 30.4 10.8 27 178-204 11-41 (497)
96 3qh9_A Liprin-beta-2; coiled-c 52.7 73 0.0025 24.1 8.3 36 221-256 23-58 (81)
97 1ykh_B RNA polymerase II holoe 51.9 91 0.0031 25.0 11.7 33 226-258 87-119 (132)
98 1x8y_A Lamin A/C; structural p 51.8 23 0.0008 26.5 5.0 23 228-250 32-54 (86)
99 3vkg_A Dynein heavy chain, cyt 51.6 1.2E+02 0.0042 36.3 13.0 35 171-205 1898-1932(3245)
100 3efg_A Protein SLYX homolog; x 51.4 67 0.0023 23.7 7.4 46 213-258 10-55 (78)
101 1yke_B RNA polymerase II holoe 51.2 1E+02 0.0035 25.4 9.5 65 179-249 60-124 (151)
102 3hhm_B NISH2 P85alpha; PI3KCA, 51.2 1.2E+02 0.004 28.5 10.8 49 216-264 211-259 (373)
103 1nkp_A C-MYC, MYC proto-oncoge 51.2 24 0.00081 26.5 4.9 33 219-251 54-86 (88)
104 3qne_A Seryl-tRNA synthetase, 50.9 25 0.00085 34.4 6.3 21 231-251 78-98 (485)
105 1nkp_B MAX protein, MYC proto- 50.6 19 0.00065 26.4 4.2 31 219-249 49-79 (83)
106 1m1j_A Fibrinogen alpha subuni 50.5 1.6E+02 0.0055 28.9 11.7 58 143-205 61-119 (491)
107 3ibp_A Chromosome partition pr 50.4 1.6E+02 0.0054 27.3 11.3 75 177-251 25-103 (302)
108 1go4_E MAD1 (mitotic arrest de 50.4 32 0.0011 26.9 5.7 24 217-240 19-42 (100)
109 2lw1_A ABC transporter ATP-bin 50.0 75 0.0026 23.5 8.7 13 222-234 27-39 (89)
110 2v0o_A FCHO2, FCH domain only 49.8 1.2E+02 0.0041 25.7 14.0 89 178-266 128-216 (276)
111 1lwu_C Fibrinogen gamma chain; 49.7 52 0.0018 30.5 8.0 46 213-258 8-53 (323)
112 2wt7_A Proto-oncogene protein 49.5 59 0.002 22.7 6.5 34 213-246 26-59 (63)
113 2yy0_A C-MYC-binding protein; 49.4 18 0.00063 25.0 3.7 25 222-246 24-48 (53)
114 1x79_B RAB GTPase binding effe 49.4 70 0.0024 25.5 7.6 29 176-204 13-41 (112)
115 2no2_A HIP-I, huntingtin-inter 49.0 93 0.0032 24.2 9.6 34 225-258 69-102 (107)
116 2efr_A General control protein 48.7 1.2E+02 0.004 25.3 13.3 28 176-203 35-62 (155)
117 2w6a_A ARF GTPase-activating p 48.4 73 0.0025 22.9 7.6 42 222-263 18-59 (63)
118 1t2k_D Cyclic-AMP-dependent tr 47.7 57 0.002 22.5 6.2 32 214-245 26-57 (61)
119 1fxk_C Protein (prefoldin); ar 47.3 98 0.0033 24.0 11.2 85 175-259 14-130 (133)
120 2fup_A Hypothetical protein PA 47.3 1E+02 0.0034 24.2 8.5 56 187-246 11-68 (157)
121 3iox_A AGI/II, PA; alpha helix 46.6 2.2E+02 0.0077 28.0 12.7 47 189-237 8-54 (497)
122 1a93_B MAX protein, coiled coi 46.6 33 0.0011 22.0 4.2 25 227-251 10-34 (34)
123 2k48_A Nucleoprotein; viral pr 46.5 96 0.0033 24.6 7.9 24 176-199 35-58 (107)
124 1gd2_E Transcription factor PA 45.6 51 0.0017 24.0 5.8 35 229-263 34-68 (70)
125 2v4h_A NF-kappa-B essential mo 45.5 1.1E+02 0.0038 24.3 8.1 51 218-268 25-78 (110)
126 1gmj_A ATPase inhibitor; coile 45.5 98 0.0034 23.5 7.9 29 231-259 51-79 (84)
127 3s9g_A Protein hexim1; cyclin 45.4 1.1E+02 0.0038 24.1 11.2 43 218-260 52-94 (104)
128 1hjb_A Ccaat/enhancer binding 44.9 48 0.0016 25.2 5.8 39 212-250 38-76 (87)
129 1ykh_B RNA polymerase II holoe 44.7 1.2E+02 0.0041 24.3 9.9 67 178-250 59-125 (132)
130 3cve_A Homer protein homolog 1 44.1 94 0.0032 22.9 7.9 22 181-202 5-26 (72)
131 3ga8_A HTH-type transcriptiona 43.5 3.6 0.00012 30.0 -0.8 22 9-31 25-46 (78)
132 2ve7_A Kinetochore protein HEC 43.0 48 0.0016 30.2 6.6 28 218-245 186-213 (315)
133 2yy0_A C-MYC-binding protein; 42.3 46 0.0016 22.9 4.9 31 211-241 20-50 (53)
134 1deq_A Fibrinogen (alpha chain 42.3 2.1E+02 0.0073 27.3 11.0 41 214-254 117-157 (390)
135 3ra3_B P2F; coiled coil domain 42.2 23 0.00077 21.4 2.8 23 221-243 4-26 (28)
136 3rrk_A V-type ATPase 116 kDa s 42.1 1.9E+02 0.0064 25.8 11.4 32 222-253 97-128 (357)
137 3ajw_A Flagellar FLIJ protein; 41.7 1.2E+02 0.0041 23.5 10.8 35 214-248 85-119 (150)
138 3cvf_A Homer-3, homer protein 41.2 72 0.0025 23.9 6.1 8 185-192 15-22 (79)
139 3m91_A Proteasome-associated A 41.0 86 0.0029 21.6 6.6 10 229-238 28-37 (51)
140 3m9b_A Proteasome-associated A 40.6 36 0.0012 30.7 5.2 39 219-257 56-94 (251)
141 3lss_A Seryl-tRNA synthetase; 40.5 1.4E+02 0.0049 29.0 9.8 23 180-202 48-70 (484)
142 2xu6_A MDV1 coiled coil; prote 40.4 68 0.0023 23.8 5.8 43 212-254 23-65 (72)
143 3mov_A Lamin-B1; LMNB1, B-type 39.7 33 0.0011 26.3 4.2 21 229-249 42-62 (95)
144 2i1j_A Moesin; FERM, coiled-co 39.4 15 0.00051 36.4 2.7 45 214-258 339-383 (575)
145 3gp4_A Transcriptional regulat 39.1 1.4E+02 0.0049 23.6 9.9 39 221-259 85-123 (142)
146 3gp4_A Transcriptional regulat 39.1 1.4E+02 0.0049 23.6 8.6 34 219-252 90-123 (142)
147 4fi5_A Nucleoprotein; structur 39.0 1.5E+02 0.0051 23.7 8.6 27 211-237 23-49 (113)
148 3uux_B Mitochondrial division 38.6 85 0.0029 28.2 7.2 44 212-255 179-222 (242)
149 3tq7_B Microtubule-associated 38.5 40 0.0014 25.4 4.4 28 177-204 9-36 (82)
150 4emc_A Monopolin complex subun 38.3 1.1E+02 0.0039 26.4 7.7 34 222-255 25-58 (190)
151 3i00_A HIP-I, huntingtin-inter 38.2 1.5E+02 0.0052 23.6 11.0 20 183-202 15-34 (120)
152 1t6f_A Geminin; coiled-coil, c 38.1 77 0.0026 20.6 5.0 28 231-258 7-34 (37)
153 3opc_A Uncharacterized protein 38.1 97 0.0033 24.6 7.0 58 187-245 12-69 (154)
154 4e61_A Protein BIM1; EB1-like 37.8 86 0.0029 24.8 6.4 34 218-251 19-52 (106)
155 4b4t_K 26S protease regulatory 37.8 58 0.002 31.0 6.5 43 214-256 46-88 (428)
156 3gpv_A Transcriptional regulat 37.4 1.6E+02 0.0053 23.5 8.4 6 190-195 77-82 (148)
157 3o0z_A RHO-associated protein 36.7 1.9E+02 0.0067 24.4 11.1 25 220-244 114-138 (168)
158 1yke_B RNA polymerase II holoe 35.6 1E+02 0.0035 25.4 6.8 35 225-259 86-120 (151)
159 2dq3_A Seryl-tRNA synthetase; 35.1 52 0.0018 31.1 5.7 20 229-248 80-99 (425)
160 3he5_B Synzip2; heterodimeric 35.0 1E+02 0.0036 20.8 6.7 18 236-253 29-46 (52)
161 2aze_B Transcription factor E2 34.7 78 0.0027 24.6 5.7 34 212-245 8-41 (106)
162 2i1j_A Moesin; FERM, coiled-co 34.5 43 0.0015 33.1 5.1 17 187-203 332-348 (575)
163 3f2b_A DNA-directed DNA polyme 34.5 16 0.00056 39.0 2.2 34 14-47 495-553 (1041)
164 2dgc_A Protein (GCN4); basic d 34.4 60 0.0021 22.9 4.6 24 229-252 35-58 (63)
165 3r4h_A Coiled coil helix CC-TE 34.4 64 0.0022 20.2 4.1 15 239-253 10-24 (34)
166 2fxo_A Myosin heavy chain, car 34.3 1.7E+02 0.0058 23.0 12.9 42 219-260 71-112 (129)
167 2oto_A M protein; helical coil 34.3 1.8E+02 0.0062 23.4 12.6 8 188-195 34-41 (155)
168 2eqb_B RAB guanine nucleotide 34.3 1.6E+02 0.0056 22.8 11.8 15 180-194 16-30 (97)
169 2xnx_M M protein, M1-BC1; cell 34.2 22 0.00076 29.7 2.5 29 229-257 78-106 (146)
170 3viq_B Mating-type switching p 33.4 41 0.0014 25.7 3.7 26 213-238 4-29 (85)
171 3cvf_A Homer-3, homer protein 33.2 61 0.0021 24.3 4.6 33 218-250 14-46 (79)
172 2wt7_B Transcription factor MA 32.9 1.3E+02 0.0046 22.9 6.6 30 231-260 48-77 (90)
173 1jnm_A Proto-oncogene C-JUN; B 32.8 49 0.0017 23.0 3.9 28 215-242 27-54 (62)
174 4b4t_J 26S protease regulatory 32.6 62 0.0021 30.7 5.7 41 218-258 26-66 (405)
175 2dq3_A Seryl-tRNA synthetase; 32.6 29 0.00098 33.0 3.4 20 219-238 77-96 (425)
176 2lw1_A ABC transporter ATP-bin 32.1 1.5E+02 0.0052 21.8 8.8 22 178-199 24-45 (89)
177 2ld7_B Paired amphipathic heli 31.8 56 0.0019 23.9 4.2 53 177-233 14-66 (75)
178 2pms_C Pneumococcal surface pr 31.1 1.3E+02 0.0045 24.4 6.6 26 180-205 10-35 (125)
179 4e61_A Protein BIM1; EB1-like 30.6 2E+02 0.0068 22.7 7.5 22 217-238 32-53 (106)
180 2zdi_C Prefoldin subunit alpha 30.1 1.7E+02 0.0058 23.4 7.2 82 178-259 25-140 (151)
181 1fmh_A General control protein 30.0 93 0.0032 19.4 4.2 14 237-250 14-27 (33)
182 3haj_A Human pacsin2 F-BAR; pa 30.0 3.5E+02 0.012 25.5 10.6 41 227-267 206-246 (486)
183 4dk0_A Putative MACA; alpha-ha 29.5 2.2E+02 0.0077 25.0 8.7 17 231-247 129-145 (369)
184 2ic9_A Nucleocapsid protein; h 29.4 2E+02 0.0068 22.3 8.6 22 213-234 8-29 (96)
185 3ra3_A P1C; coiled coil domain 29.4 28 0.00097 21.0 1.7 22 236-257 5-26 (28)
186 2b5u_A Colicin E3; high resolu 29.3 1.3E+02 0.0045 29.8 7.4 18 178-195 293-310 (551)
187 1x3a_A Synapse associated prot 29.1 12 0.00042 29.0 0.1 25 245-269 57-81 (100)
188 1wt6_A Myotonin-protein kinase 28.9 1.9E+02 0.0064 21.8 8.8 28 215-242 43-70 (81)
189 2ic6_A Nucleocapsid protein; h 28.5 1.9E+02 0.0063 21.7 7.9 23 213-235 8-30 (78)
190 4emc_A Monopolin complex subun 28.1 2.1E+02 0.0073 24.7 7.8 41 212-252 22-62 (190)
191 2zqm_A Prefoldin beta subunit 28.0 1.9E+02 0.0064 21.6 10.1 37 223-259 69-105 (117)
192 2dgc_A Protein (GCN4); basic d 27.9 1.1E+02 0.0038 21.5 5.1 29 231-259 30-58 (63)
193 3bas_A Myosin heavy chain, str 27.8 1.9E+02 0.0064 21.5 11.4 35 218-252 50-84 (89)
194 4dk0_A Putative MACA; alpha-ha 27.8 2.9E+02 0.0098 24.3 9.0 26 231-256 122-147 (369)
195 3oa7_A Head morphogenesis prot 27.8 3.1E+02 0.011 24.0 9.9 62 194-258 10-71 (206)
196 3rrk_A V-type ATPase 116 kDa s 27.5 2.3E+02 0.0077 25.3 8.4 18 144-161 64-81 (357)
197 4ani_A Protein GRPE; chaperone 27.4 2.3E+02 0.0078 24.7 8.0 35 219-253 61-95 (213)
198 2xu6_A MDV1 coiled coil; prote 27.2 1.9E+02 0.0065 21.4 7.0 28 215-242 40-67 (72)
199 3mi9_C Protein TAT; P-TEFB, HI 26.7 24 0.00083 27.0 1.4 10 14-23 3-12 (86)
200 4ad8_A DNA repair protein RECN 26.6 2.7E+02 0.0092 26.2 9.1 6 31-36 43-48 (517)
201 1f5n_A Interferon-induced guan 26.5 4.8E+02 0.016 25.8 11.6 12 21-32 179-190 (592)
202 1gu4_A CAAT/enhancer binding p 26.1 75 0.0026 23.6 4.0 32 213-244 39-70 (78)
203 1tac_A TAT protein; transcript 25.9 76 0.0026 24.2 4.0 9 14-22 3-11 (86)
204 3uux_B Mitochondrial division 25.7 3E+02 0.01 24.6 8.5 30 214-243 195-224 (242)
205 1d7m_A Cortexillin I; coiled-c 25.7 2.3E+02 0.008 21.9 11.4 29 229-257 72-100 (101)
206 2e7s_A RAB guanine nucleotide 25.4 2.8E+02 0.0095 22.7 8.3 18 182-199 21-38 (135)
207 1nkp_B MAX protein, MYC proto- 25.2 1.4E+02 0.0049 21.5 5.4 26 229-254 52-77 (83)
208 4b4t_M 26S protease regulatory 24.8 74 0.0025 30.3 4.8 36 220-255 35-70 (434)
209 1fxk_C Protein (prefoldin); ar 24.7 2.4E+02 0.0082 21.7 7.2 38 213-250 4-41 (133)
210 3twe_A Alpha4H; unknown functi 23.9 97 0.0033 18.5 3.4 12 215-226 6-17 (27)
211 3t97_C Nuclear pore glycoprote 23.7 61 0.0021 23.3 3.0 42 213-254 15-56 (64)
212 1zxa_A CGMP-dependent protein 23.7 1.6E+02 0.0054 21.4 5.3 25 233-257 27-51 (67)
213 3mov_A Lamin-B1; LMNB1, B-type 23.7 2.4E+02 0.0082 21.4 10.1 38 214-251 48-85 (95)
214 3q0x_A Centriole protein; cent 23.6 3.8E+02 0.013 23.6 9.1 44 217-260 171-214 (228)
215 1gmj_A ATPase inhibitor; coile 23.3 2.4E+02 0.0084 21.3 6.7 28 224-251 51-78 (84)
216 2ve7_C Kinetochore protein NUF 23.2 38 0.0013 30.1 2.2 12 148-159 93-104 (250)
217 1deb_A APC protein, adenomatou 23.1 1.9E+02 0.0066 20.1 7.9 44 213-256 6-49 (54)
218 3viq_B Mating-type switching p 23.0 2.5E+02 0.0085 21.3 6.7 22 230-251 7-28 (85)
219 3s4r_A Vimentin; alpha-helix, 23.0 2.4E+02 0.0083 21.1 9.9 38 222-259 54-91 (93)
220 2wuj_A Septum site-determining 23.0 77 0.0026 21.8 3.4 14 236-249 39-52 (57)
221 2p22_A Suppressor protein STP2 22.9 2.6E+02 0.009 23.6 7.3 35 214-248 53-87 (174)
222 3n5l_A Binding protein compone 22.6 3.2E+02 0.011 23.7 8.2 83 175-259 215-303 (310)
223 1fxk_A Prefoldin; archaeal pro 22.4 2.3E+02 0.008 20.7 10.6 34 225-258 66-99 (107)
224 1gk6_A Vimentin; intermediate 22.2 2E+02 0.0068 19.8 7.1 39 213-251 10-48 (59)
225 2p4w_A Transcriptional regulat 22.1 3.5E+02 0.012 22.6 8.2 25 175-199 121-145 (202)
226 2xdj_A Uncharacterized protein 22.1 2.5E+02 0.0084 20.9 9.2 35 215-249 25-59 (83)
227 3lss_A Seryl-tRNA synthetase; 22.1 4.9E+02 0.017 25.2 10.0 25 180-204 41-65 (484)
228 3opc_A Uncharacterized protein 21.6 2.9E+02 0.01 21.7 7.1 12 186-197 25-36 (154)
229 2inc_A Toluene, O-xylene monoo 21.6 38 0.0013 33.0 2.1 23 14-38 387-409 (491)
230 3a2a_A Voltage-gated hydrogen 21.2 2.2E+02 0.0077 20.1 6.7 38 218-255 12-49 (58)
231 3d5a_X RF1, peptide chain rele 21.1 2.5E+02 0.0084 26.4 7.4 25 179-203 32-56 (354)
232 4h22_A Leucine-rich repeat fli 21.1 3E+02 0.01 21.5 9.4 38 218-255 45-82 (103)
233 3m91_A Proteasome-associated A 20.5 2.1E+02 0.0073 19.5 7.2 32 229-260 14-45 (51)
234 1bb1_B Designed, thermostable 20.5 1.7E+02 0.0059 18.4 4.7 21 238-258 9-29 (36)
235 1m1j_C Fibrinogen gamma chain; 20.3 2.5E+02 0.0086 26.7 7.4 23 231-253 105-127 (409)
236 2w83_C C-JUN-amino-terminal ki 20.3 2.8E+02 0.0094 20.7 8.1 44 215-258 21-64 (77)
237 2wvr_A Geminin; DNA replicatio 20.3 3.1E+02 0.011 24.0 7.3 43 220-264 99-141 (209)
238 2ve7_C Kinetochore protein NUF 20.2 1.3E+02 0.0046 26.5 5.2 35 217-251 148-182 (250)
239 2aze_A Transcription factor DP 20.1 3.8E+02 0.013 22.3 7.7 27 220-246 8-34 (155)
240 1dh3_A Transcription factor CR 20.0 1.9E+02 0.0063 19.8 4.8 17 234-250 32-48 (55)
241 1a92_A Delta antigen; leucine 20.0 1.7E+02 0.0059 20.1 4.5 21 231-251 14-34 (50)
No 1
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=99.04 E-value=8.6e-10 Score=86.96 Aligned_cols=58 Identities=21% Similarity=0.351 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024294 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFFNI 268 (269)
Q Consensus 211 seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre~ 268 (269)
+.+.+.++|..|+.+|++|+++|+.||++++.|+.+|.+++.++++|+.+|++||++|
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~ey 62 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREY 62 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3577889999999999999999999999999999999999999999999999999997
No 2
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=98.66 E-value=6.4e-09 Score=66.63 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=18.1
Q ss_pred CChhhhHHHHHHHHHHhcCCCCCCCc
Q 024294 143 SGFHSTITVLKRAFEIATSQTQVEQP 168 (269)
Q Consensus 143 ~~ls~~i~~l~~lFdILS~~s~IDhP 168 (269)
.+||++++++++||||||++++||||
T Consensus 6 ~~ls~~~~~~~~lFdILS~~sdIDhP 31 (31)
T 2p1l_B 6 ENLSRRLKVTGDLFDIMSGQTDVDHP 31 (31)
T ss_dssp HHHHHHHHHHHHHHHHTTC-------
T ss_pred ccHHHHHHHHHHHHHHHhCCCcCCCC
Confidence 57999999999999999999999999
No 3
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=90.77 E-value=3.3 Score=32.02 Aligned_cols=42 Identities=12% Similarity=0.302 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
+..+..+|..|+.+++.+..+|..++.+...++.+-...-.+
T Consensus 20 E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~e 61 (96)
T 3q8t_A 20 EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQRE 61 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 455666666677777666666666666666665554443333
No 4
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.11 E-value=5 Score=32.11 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~ 249 (269)
..|..+...+..|++.|+.=++....+... ....|+.++..|......+...|.+||.....++..-+.
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~--~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYK--QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 457777788888888888777766554322 356677788888777777777888887777776655443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=89.99 E-value=4.4 Score=35.72 Aligned_cols=8 Identities=13% Similarity=-0.214 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 024294 215 FLKEKLKI 222 (269)
Q Consensus 215 l~~El~~L 222 (269)
+.+|+..+
T Consensus 95 L~kEie~~ 102 (256)
T 3na7_A 95 LNIEEDIA 102 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33343333
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.42 E-value=2.6 Score=40.44 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024294 230 EAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 230 ~~eLeeLEkE~~~l~~EL~~le 251 (269)
.++++.++++..+++..++..+
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~ 557 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKR 557 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHHHHhhhh
Confidence 3334434444444444333333
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.89 E-value=4.2 Score=39.00 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
+..+..++.++...++........++...
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i~~~~ 490 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTNL 490 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 36777777777777777776666666543
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.61 E-value=0.91 Score=48.40 Aligned_cols=13 Identities=15% Similarity=0.621 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 024294 181 LDKEVDDVTRDIE 193 (269)
Q Consensus 181 Ld~ql~~~~~E~d 193 (269)
|+.+++..++++.
T Consensus 933 Lq~rL~~~e~~n~ 945 (1080)
T 2dfs_A 933 LQRKIDEQNKEYK 945 (1080)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3444444333433
No 9
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.77 E-value=6.1 Score=29.23 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
+.+++++..+..|.+.+..=+..++.. ..+..+...+++.+-..|...+..||.+...+...+.....++.
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~------l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAEAD------KKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777776666655432 23344455566677777777777777777777666666654443
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=87.56 E-value=11 Score=32.67 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e 205 (269)
..+...+..++.+++.|-+-|..+=+.|+.+
T Consensus 16 k~~~~~~~q~~~~le~El~EFqesSrELE~E 46 (189)
T 2v71_A 16 KELSMKYKQSFQEARDELVEFQEGSRELEAE 46 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778889999999988888888877653
No 11
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.33 E-value=7.3 Score=31.92 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 216 ~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
.+|+..|+.+-..+..+++.+.++.+++..++..++.+..+|+
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555553
No 12
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=86.99 E-value=7.6 Score=30.64 Aligned_cols=49 Identities=8% Similarity=0.083 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFFN 267 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre 267 (269)
+..|..........|..++.+.+....++.+...+.+.++...++.+.+
T Consensus 76 i~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~~~ 124 (150)
T 3ajw_A 76 IQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTAA 124 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666666666666666666666666665555555443
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.29 E-value=8.9 Score=33.26 Aligned_cols=68 Identities=10% Similarity=0.148 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 182 DKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 182 d~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
..++..+..|.+.|+.=++.+..+... ....|+.++..|...-..+...|.+||.....++...+...
T Consensus 62 ~~~~~~L~~E~e~~k~K~~~~~~e~~~--~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~ 129 (189)
T 2v71_A 62 QADNQRLKYEVEALKEKLEHQYAQSYK--QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI 129 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333334444444444444433332111 24555666666766666677777777766666665555444
No 14
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.65 E-value=13 Score=30.51 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
+..++..+..+...+.++++++.++...+..++..|+.+.
T Consensus 94 lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 94 LKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555444
No 15
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=85.28 E-value=8.2 Score=36.09 Aligned_cols=100 Identities=14% Similarity=0.218 Sum_probs=54.9
Q ss_pred HHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-Hhccccc-------cCCHHHHHHH-HHHH
Q 024294 154 RAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRD--IEAYEACLQR-LEGEARD-------VLSEADFLKE-KLKI 222 (269)
Q Consensus 154 ~lFdILS~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E--~d~Y~~fL~~-L~~e~~~-------~~seeel~~E-l~~L 222 (269)
.+-.+++|+..+ .+-.+.+.+.+++.|.....+ +..|...|++ |...... .-+.---... ...|
T Consensus 360 ~~~~vl~G~~t~-----eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (471)
T 3mq9_A 360 AVINAASGRQTV-----DEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASL 434 (471)
T ss_dssp HHHHHHHSSSCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCH-----HHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHH
Confidence 345677776543 455666666666666655443 4455555552 2111000 0000000011 1235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
+++-....+.++++|.|...++.+|+.++++.+++.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 435 DAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566666667788888888888888888888877764
No 16
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=84.67 E-value=3.3 Score=30.88 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 211 seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
+..+|+..+++-.+|-+.....|+++|++..+.+++|+.|+.+...|
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555655555555556666667888888888888888777766554
No 17
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.77 E-value=13 Score=28.64 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
++.+++++..+..|.+.+..-...++
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e 29 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAE 29 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777776665555444
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.04 E-value=12 Score=32.77 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
++..|..|...+..++..+|.+..++..++..++.+...
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~ 129 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQED 129 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666665555555555544433
No 19
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=82.04 E-value=6.4 Score=29.95 Aligned_cols=44 Identities=16% Similarity=0.388 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
+..||.++...--.+..+|++.++....|..||+.++.+.+.|.
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555667777888888888888888887777764
No 20
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=81.66 E-value=11 Score=28.37 Aligned_cols=72 Identities=14% Similarity=0.235 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
..|-++++.+..|...-..--..|+-. -.+|-..+..|-.|-..|..||..+..-+.+++..++.+++|+++
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvv------k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIV------KNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355666666666654433333333321 245667777788888888888888888888888888888877664
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=81.28 E-value=14 Score=39.34 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024294 234 EETEKQNAEVNAELKELE 251 (269)
Q Consensus 234 eeLEkE~~~l~~EL~~le 251 (269)
..|+++...|++++.+++
T Consensus 1026 ~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1026 SELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 22
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=81.12 E-value=6.5 Score=27.99 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
..+...|..+++.|+++..+|..++..|+.|...|.+
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567778888888888888888888877776654
No 23
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=81.05 E-value=19 Score=28.67 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 173 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (269)
Q Consensus 173 Ctd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~ 252 (269)
.....+..|++++..+...++.|..+++.|+... .+|+..++....-|+.+|.-....-+...=|+.
T Consensus 32 e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N-------------DDLER~~R~t~~SLeD~E~k~n~aiErnalLE~ 98 (111)
T 2v66_B 32 QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN-------------DDLERAKRATIVSLEDFEQRLNQAIERNAFLES 98 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999987643 234444444444555555444444333334444
Q ss_pred HHH
Q 024294 253 KSK 255 (269)
Q Consensus 253 E~~ 255 (269)
|..
T Consensus 99 El~ 101 (111)
T 2v66_B 99 ELD 101 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 24
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=81.01 E-value=17 Score=28.00 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 220 ~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
.+++..-..+...|+..++.....+.++..|......|.
T Consensus 61 d~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 61 DQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333344445555555555666666666666555543
No 25
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.61 E-value=23 Score=33.22 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhcccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 190 RDIEAYEACLQRLEGEARDV-LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 190 ~E~d~Y~~fL~~L~~e~~~~-~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
+-.+.|....++++.+.... -..+....+.+++++|.+++..+|.++.+..++..+.++++-..
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 44455666666555432110 12233334444444444444444444444444444444444433
No 26
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=79.03 E-value=19 Score=27.35 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDV------------LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~------------~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~ 245 (269)
+..+..++...+.+......-++.|..-..+. .+.++ .+..|+.....+..+++.|++....+..
T Consensus 22 ~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~e---a~~~L~~~~e~ie~~i~~le~~~~~l~~ 98 (117)
T 2zqm_A 22 LQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDK---AVAELKEKIETLEVRLNALERQEKKLNE 98 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666665432211 12233 3334555556667777777777777777
Q ss_pred HHHHHHHHHHHH
Q 024294 246 ELKELELKSKRF 257 (269)
Q Consensus 246 EL~~le~E~~~L 257 (269)
++..++.+..++
T Consensus 99 ~l~~lk~~l~~~ 110 (117)
T 2zqm_A 99 KLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666543
No 27
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=78.59 E-value=25 Score=28.49 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 232 AIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 232 eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
.+++|+.|...+..+|..+.+|.++|..+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555555555443
No 28
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=78.13 E-value=40 Score=32.22 Aligned_cols=80 Identities=16% Similarity=0.064 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEA--RDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~--~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
|+.+-++++.+..+...|+..++..-... ....+.+...+..+++.++-.++...+...+.+...|+..+..++.+..
T Consensus 43 LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~ 122 (409)
T 1m1j_C 43 IEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKIT 122 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHH
Confidence 45566677777888888888888764332 1112333333344444444444444444444444444444444444444
Q ss_pred HH
Q 024294 256 RF 257 (269)
Q Consensus 256 ~L 257 (269)
.|
T Consensus 123 ~l 124 (409)
T 1m1j_C 123 QL 124 (409)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 29
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.05 E-value=21 Score=33.38 Aligned_cols=12 Identities=8% Similarity=0.205 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 024294 188 VTRDIEAYEACL 199 (269)
Q Consensus 188 ~~~E~d~Y~~fL 199 (269)
.+.+++.+...+
T Consensus 365 l~~~~~~le~~~ 376 (487)
T 3oja_A 365 LEQKKKALDEQV 376 (487)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 30
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=76.92 E-value=18 Score=42.99 Aligned_cols=35 Identities=9% Similarity=0.127 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
+..++++-+.+.++|.+++++.++|++.|.+++++
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~ 2050 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEE 2050 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444433
No 31
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=76.66 E-value=22 Score=26.95 Aligned_cols=75 Identities=11% Similarity=0.235 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 181 LDKEVDDVTRDIEAYEACLQRLEGEAR------DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 181 Ld~ql~~~~~E~d~Y~~fL~~L~~e~~------~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
|..+......+...+..-+..+..... ...+.......+...+.+-..+..+|..+..+...++.++..++.+.
T Consensus 22 L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 22 ITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555543111 01133322333444555555555666666666666666666555554
Q ss_pred H
Q 024294 255 K 255 (269)
Q Consensus 255 ~ 255 (269)
.
T Consensus 102 ~ 102 (112)
T 1l8d_A 102 K 102 (112)
T ss_dssp H
T ss_pred H
Confidence 4
No 32
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.28 E-value=18 Score=27.36 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
+.-++.|+..|+++-..|.++..++...++.++.|...++.|...
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777666666666666666655443
No 33
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.95 E-value=11 Score=30.17 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDV-LSEADFLKEKLKIEEEERKLEAAIEETE----KQNAEVNAELKELELK 253 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~-~seeel~~El~~Le~EE~~L~~eLeeLE----kE~~~l~~EL~~le~E 253 (269)
.+++.+++.+.........-|+..+.+-.+. -....|..++..++..-..|...|.++| .+...+...|..++.+
T Consensus 13 ~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~e 92 (131)
T 3tnu_A 13 EWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQ 92 (131)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhc
Q 024294 254 SKRFKELEERYFFNI 268 (269)
Q Consensus 254 ~~~Ld~eEe~yWre~ 268 (269)
..++..+=.+..++|
T Consensus 93 L~~~r~em~~ql~EY 107 (131)
T 3tnu_A 93 LAQLRCEMEQQNQEY 107 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
No 34
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.85 E-value=25 Score=27.88 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 024294 183 KEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETE----KQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 183 ~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLE----kE~~~l~~EL~~le~E~~~Ld 258 (269)
..+..+..|...++.-+..|+. ++..++..-..|...|.++| .+...+...|..++.+..++.
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~-------------el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r 95 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRA-------------EIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAK 95 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHhhhhc
Q 024294 259 ELEERYFFNI 268 (269)
Q Consensus 259 ~eEe~yWre~ 268 (269)
.+=.+..++|
T Consensus 96 ~e~~~ql~EY 105 (129)
T 3tnu_B 96 QDMARLLREY 105 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 35
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=75.79 E-value=26 Score=30.56 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=6.7
Q ss_pred HHHHHHHHHh
Q 024294 150 TVLKRAFEIA 159 (269)
Q Consensus 150 ~~l~~lFdIL 159 (269)
.++..|||.+
T Consensus 121 e~i~elfd~~ 130 (213)
T 1ik9_A 121 EVIRELIAYA 130 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4566788764
No 36
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=75.76 E-value=7.8 Score=38.62 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
+|+..+..|+++-...++.|..|++..+++..+|++||..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666677777666666666666644
No 37
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=75.49 E-value=25 Score=26.87 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
++.+++.+..+..|.+.+..-...++
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e 29 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAE 29 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655555444
No 38
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=74.67 E-value=15 Score=27.93 Aligned_cols=11 Identities=0% Similarity=0.084 Sum_probs=0.5
Q ss_pred HHHHHHHHHHH
Q 024294 185 VDDVTRDIEAY 195 (269)
Q Consensus 185 l~~~~~E~d~Y 195 (269)
|..+++++..|
T Consensus 4 L~~~Ekd~~~~ 14 (81)
T 3qh9_A 4 LVGMEKEQREQ 14 (81)
T ss_dssp ----------C
T ss_pred hhHHhhhhhhh
Confidence 34445555444
No 39
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=73.36 E-value=12 Score=28.65 Aligned_cols=38 Identities=8% Similarity=0.182 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
-...+..+..+...|+++...|..++..|+.|...|..
T Consensus 34 rk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677888888888888888888888777764
No 40
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=72.82 E-value=9.8 Score=25.59 Aligned_cols=32 Identities=16% Similarity=0.384 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
+|++.+..+.+|.+.+++.|..++.+.+.|.+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777777788877777766654
No 41
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=72.71 E-value=29 Score=26.45 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 227 RKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 227 ~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
..+...|+..++.....+.+...|.+....|
T Consensus 68 ~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 68 KEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555666665555444
No 42
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=71.26 E-value=7.8 Score=35.54 Aligned_cols=9 Identities=33% Similarity=0.755 Sum_probs=6.7
Q ss_pred HHHHHHHHH
Q 024294 192 IEAYEACLQ 200 (269)
Q Consensus 192 ~d~Y~~fL~ 200 (269)
.++|..||+
T Consensus 152 ~~~Y~~fl~ 160 (315)
T 2ve7_A 152 IKCYESFMS 160 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 457888887
No 43
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=71.20 E-value=30 Score=25.85 Aligned_cols=74 Identities=18% Similarity=0.319 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccc------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDV------------LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~------------~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~E 246 (269)
..+..++...+.+......-++.|..-..+. .+.++. +..|+.....+..+++.++++...+..+
T Consensus 18 ~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~---~~~L~~~~e~i~~~i~~le~~~~~~~~~ 94 (107)
T 1fxk_A 18 QAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDEL---TEELQEKLETLQLREKTIERQEERVMKK 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666665432211 123333 3335555555667777777777777777
Q ss_pred HHHHHHHHH
Q 024294 247 LKELELKSK 255 (269)
Q Consensus 247 L~~le~E~~ 255 (269)
+..++....
T Consensus 95 l~~lk~~l~ 103 (107)
T 1fxk_A 95 LQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776554
No 44
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=70.52 E-value=33 Score=29.20 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 180 KLDKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
.|++||.++..-.++=..--.+++
T Consensus 10 ~LekQL~E~n~kLk~EsE~~~rlk 33 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTAVRLR 33 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 355666665554444333333333
No 45
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=70.50 E-value=15 Score=25.57 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
...|..+.+.|+.+...|..++..|+.|...|.+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777777777666654
No 46
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=70.36 E-value=12 Score=35.31 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
.+.+..++..|+++-+++.++++.++.+..++.+++...+.+.++|..
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n 52 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHN 52 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777777777777777777766666665543
No 47
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=69.64 E-value=43 Score=27.09 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~ 248 (269)
+++|+.|...|.++|++++.+.+++..+..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 444444444444444444444444444443
No 48
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=69.44 E-value=25 Score=26.11 Aligned_cols=46 Identities=9% Similarity=0.118 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY 264 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~y 264 (269)
+.+|+..-....++|...+.-.++++.+|...+.+.+.|..+=.+|
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555566666666667777777777777777776666555
No 49
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=69.19 E-value=26 Score=28.12 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEA 194 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~ 194 (269)
|.+|+.|..+++.+..+.+.
T Consensus 14 D~~Ie~Lkreie~lk~ele~ 33 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLEN 33 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777777766666655443
No 50
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=69.07 E-value=41 Score=26.68 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
+..-..+...|++.+.....+.++-+.++.+...|
T Consensus 82 e~~l~el~~rleeeee~~~~L~~~kkkle~e~~~L 116 (129)
T 2fxo_A 82 EAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSEL 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444433
No 51
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=68.73 E-value=35 Score=25.66 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
|..--..|..-+.+|++|.+.++..|..++.+.++|+.
T Consensus 37 L~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 37 LKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445556777778888888888888877777654
No 52
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=68.07 E-value=33 Score=25.77 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~ 245 (269)
|.|--.|...+.+...|.++-..--..|.... ..|..-+.+|+.|+..+..++.-+....++|..
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~------~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGH------QKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666665555554432 234445667788888888888777776666553
No 53
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=67.80 E-value=31 Score=33.05 Aligned_cols=58 Identities=9% Similarity=0.168 Sum_probs=37.6
Q ss_pred CChhhhHHHHHHHHHHhc-CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024294 143 SGFHSTITVLKRAFEIAT-SQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (269)
Q Consensus 143 ~~ls~~i~~l~~lFdILS-~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e 205 (269)
..|..+|..|.+.-+-++ ..+++. -=+..|.+.|.+.+.++..--..|..|...|+..
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~-----~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~ 121 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSN-----TLTKNIVELMRGDFAKANNNDNTFKQINEDLRSR 121 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 567777777665444443 333333 2467777778888877777777788887777653
No 54
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=67.40 E-value=16 Score=27.31 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
-...+..+......|+++...|..++..|+.|...|.
T Consensus 34 rk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555677888899999999999999988877665
No 55
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=67.08 E-value=18 Score=34.43 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
..|..|+..+++...++.++++.+..+.+.+.++|.+.+.+.++|.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~ 51 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELH 51 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666666555555544
No 56
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=66.73 E-value=26 Score=23.49 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024294 228 KLEAAIEETEKQNAEVNAEL 247 (269)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~EL 247 (269)
.|..+|..+|+..+.+...+
T Consensus 24 aleselqalekklaalkskl 43 (48)
T 1g6u_A 24 ALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 57
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=66.39 E-value=34 Score=25.33 Aligned_cols=19 Identities=26% Similarity=0.393 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 024294 185 VDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 185 l~~~~~E~d~Y~~fL~~L~ 203 (269)
++.+..-+.....-|..++
T Consensus 3 l~~l~~~~~sLE~~l~e~e 21 (84)
T 1gk4_A 3 VDALKGTNESLERQMREME 21 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444544444444443
No 58
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=65.84 E-value=41 Score=25.43 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 024294 178 SDKLDKEVDDV 188 (269)
Q Consensus 178 le~Ld~ql~~~ 188 (269)
++.|+.++..+
T Consensus 8 leqLE~KIq~a 18 (81)
T 2jee_A 8 FEKLEAKVQQA 18 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 59
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=65.49 E-value=68 Score=28.63 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 177 LSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
|+.++-.....-..--+.|+..||.+..
T Consensus 74 Ll~e~ge~e~~~a~~~d~yR~~LK~IR~ 101 (234)
T 3plt_A 74 LIYELGELQDQFIDKYDQYRVTLKSIRN 101 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445556678889988865
No 60
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=64.87 E-value=15 Score=22.90 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 024294 242 EVNAELKELELKSKRF 257 (269)
Q Consensus 242 ~l~~EL~~le~E~~~L 257 (269)
.+..||.++.-|...|
T Consensus 13 alkkeiaalkfeiaal 28 (33)
T 4dzn_A 13 ALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444443333
No 61
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.51 E-value=45 Score=27.97 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 024294 187 DVTRDIEAYEA 197 (269)
Q Consensus 187 ~~~~E~d~Y~~ 197 (269)
..+..++.|..
T Consensus 38 ~lE~~r~~~~~ 48 (154)
T 2ocy_A 38 NYNQLKEDYNT 48 (154)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 62
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=64.26 E-value=43 Score=25.10 Aligned_cols=73 Identities=14% Similarity=0.213 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFL----KE---KLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~----~E---l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
|..|..|+..+..|+..-..=++.+... .+++. .| -..++.+-..|.+.+..+--.+.+++.++..|
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~------~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL 75 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAED------IMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESL 75 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3567778888877777766666655432 12222 22 12356666666777777777777788888777
Q ss_pred HHHHHH
Q 024294 251 ELKSKR 256 (269)
Q Consensus 251 e~E~~~ 256 (269)
.+|..=
T Consensus 76 ~eEl~f 81 (86)
T 3swk_A 76 QEEIAF 81 (86)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
No 63
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=63.74 E-value=23 Score=24.94 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
.|..+.+.|+.+...|..++..|+.+...|..
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666655543
No 64
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=62.88 E-value=54 Score=25.79 Aligned_cols=78 Identities=14% Similarity=0.211 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFL----KE---KLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~----~E---l~~Le~EE~~L~~eLeeLEkE~~~l~~EL 247 (269)
..-|..|.+|++.+..|+.....=+++++... +++. .| -..++.+-..|.+.+..+--.+.+++.++
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~------edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~i 92 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDI------MRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKV 92 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 34566777777777777766666555554321 2222 11 22345555556666666666677777777
Q ss_pred HHHHHHHHHHH
Q 024294 248 KELELKSKRFK 258 (269)
Q Consensus 248 ~~le~E~~~Ld 258 (269)
..|++|..=|+
T Consensus 93 esL~eEl~FLK 103 (119)
T 3ol1_A 93 ESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766444
No 65
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=62.21 E-value=55 Score=25.78 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024294 211 SEADFLKEKLKIEEEERKL-------EAAIEETEKQNAEVNAELKELELKSKRFKELEERYFF 266 (269)
Q Consensus 211 seeel~~El~~Le~EE~~L-------~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWr 266 (269)
+-.+|-+|-..|+..-..+ ...-...-....+|+.++..|..|...|-+ |...|+
T Consensus 31 SKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~-e~~~~~ 92 (104)
T 3s9g_A 31 SKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT-ENELHR 92 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH-HHHhhc
Confidence 4455555544444444444 333333334555566666666666655544 444565
No 66
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=61.29 E-value=30 Score=34.53 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
..+.+.|..++.........|..|-..|+
T Consensus 88 k~~~E~Lr~rq~q~~dNdNtynE~S~ELR 116 (562)
T 3ghg_A 88 TNIMEILRGDFSSANNRDNTYNRVSEDLR 116 (562)
T ss_dssp HHHHHTTSSHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 44444454444444444444444444444
No 67
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=60.68 E-value=56 Score=27.41 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQN 240 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~ 240 (269)
+..|+..|..+-..+...+..|++|.
T Consensus 101 l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 101 LNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 68
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=60.43 E-value=50 Score=24.60 Aligned_cols=62 Identities=8% Similarity=0.058 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 181 Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
|+..+.+++. .|..-++.++. ....+..++.+++.+-....++.+.|-.-+-.++.||....
T Consensus 15 Le~~l~e~E~---~~~~~l~~~q~------~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 15 KEAKLRDLED---SLARERDTSRR------LLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4555555544 44444444432 23455667777777777777777888888888888887766
No 69
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=59.91 E-value=48 Score=25.94 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=25.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024294 166 EQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (269)
Q Consensus 166 DhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e 205 (269)
+.|++-+ =+..|.++++.++.|++.-....+.|+..
T Consensus 6 ~~~~~~e----~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 6 SFLFSRE----EADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp ---CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455444 57788889999999999999888877653
No 70
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=59.65 E-value=64 Score=29.95 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 235 ETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 235 eLEkE~~~l~~EL~~le~E~~~L 257 (269)
.||++..+-.+.++++|.|...|
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~ 455 (471)
T 3mq9_A 433 SLDAEKAQGQKKVEELEGEITTL 455 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333444444443333
No 71
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=59.34 E-value=55 Score=24.70 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (269)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eE 261 (269)
....++..+..+...+..++..++.+...|..+-
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666665543
No 72
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=58.99 E-value=44 Score=31.63 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 180 KLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
.|+.+...+..+.+.-+.--+.+.+
T Consensus 32 ~~~~~~r~~~~~~~~l~~~~n~~sk 56 (421)
T 1ses_A 32 ALDREVQELKKRLQEVQTERNQVAK 56 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555555555544
No 73
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.94 E-value=48 Score=25.84 Aligned_cols=27 Identities=15% Similarity=0.402 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
++.+..+|..++.+...+..=+.+|..
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~ 33 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLRE 33 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 356677777777777776666666653
No 74
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=58.58 E-value=14 Score=25.95 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 227 ~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
..|..+.+.|+.+...|..++..|+.+...|.
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777777777777666554
No 75
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=58.38 E-value=15 Score=22.66 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 234 EETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 234 eeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
+.||+..+.++..+.+++.+.+.|+
T Consensus 4 ealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655553
No 76
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=58.36 E-value=26 Score=26.98 Aligned_cols=40 Identities=20% Similarity=0.383 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
+...|+.+-..|..+++.|..|...+..|+..+..+.+.|
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666666777777777777777777666655443
No 77
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=58.06 E-value=66 Score=30.83 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAEL 247 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL 247 (269)
+..+|+.++++..++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 81 IVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444433333333
No 78
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=58.06 E-value=22 Score=27.84 Aligned_cols=33 Identities=6% Similarity=0.117 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
.|.+||..|+++...|+..|+.++...+.+.++
T Consensus 10 ~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 10 GLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455556666666666666666666666666544
No 79
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=57.50 E-value=89 Score=26.57 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 216 ~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
.+--..|.....++..+++.|++++..++.++..++.....+
T Consensus 48 ~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 48 ARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445666677777777788888888888887777744443
No 80
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=57.29 E-value=14 Score=33.33 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
+++.++..|.+..+.|.++|+++.+|...+.+|+++|.
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555666666666666666666666666666655543
No 81
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=56.84 E-value=86 Score=26.17 Aligned_cols=11 Identities=18% Similarity=0.595 Sum_probs=7.0
Q ss_pred HHHHHHHHHHH
Q 024294 178 SDKLDKEVDDV 188 (269)
Q Consensus 178 le~Ld~ql~~~ 188 (269)
++.|+.||..+
T Consensus 2 ~~~lE~qlkea 12 (155)
T 2efr_A 2 MKQLEDKVEEL 12 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45666666666
No 82
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=56.81 E-value=62 Score=31.60 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024294 230 EAAIEETEKQNAEVNAEL 247 (269)
Q Consensus 230 ~~eLeeLEkE~~~l~~EL 247 (269)
..+|++++.+..++++++
T Consensus 84 ~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 84 SNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 83
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=56.73 E-value=7.5 Score=28.85 Aligned_cols=52 Identities=21% Similarity=0.338 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER 263 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~ 263 (269)
-+++..++..+.+.-.-+..-|.+.|...+.+-.+++-|+.|.++|+..+++
T Consensus 17 ~eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERnqeR 68 (71)
T 3bbp_D 17 KEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQER 68 (71)
T ss_dssp ------------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 3445555555555545556667777888888888888888888888776553
No 84
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=55.64 E-value=66 Score=31.37 Aligned_cols=11 Identities=9% Similarity=0.121 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 024294 181 LDKEVDDVTRD 191 (269)
Q Consensus 181 Ld~ql~~~~~E 191 (269)
|+.+...+..+
T Consensus 75 ld~~~r~~~~~ 85 (501)
T 1wle_A 75 TWQELRQLREQ 85 (501)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 85
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=55.62 E-value=57 Score=24.37 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
.++......|.++...|...|.+++.-++.+.+.-..|+.+...|
T Consensus 38 kele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 38 KELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666665555555555555555555555554444
No 86
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=55.55 E-value=50 Score=25.70 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024294 243 VNAELKELELKSKRFKELEERYFFNI 268 (269)
Q Consensus 243 l~~EL~~le~E~~~Ld~eEe~yWre~ 268 (269)
+....+.+..+..-|..+=+.|-..|
T Consensus 69 iqs~aK~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 69 MQNNSKLLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666777766666655
No 87
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=55.12 E-value=29 Score=21.66 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 228 KLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
.|.+++..|.+|.+.+.=||.++.
T Consensus 6 alkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555443
No 88
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=54.50 E-value=11 Score=22.78 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024294 240 NAEVNAELKELELKSKR 256 (269)
Q Consensus 240 ~~~l~~EL~~le~E~~~ 256 (269)
.+.+.+||.+++-|...
T Consensus 9 narlkqeiaaleyeiaa 25 (28)
T 3ra3_B 9 NARLKQEIAALEYEIAA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33333444444433333
No 89
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=54.29 E-value=18 Score=26.88 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~ 249 (269)
+..|+.++..+..+++.|.++...+.++|.+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5557777777777777777776666666553
No 90
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=53.93 E-value=45 Score=23.48 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~E 246 (269)
.++..+...|+.+=..|..++..|+.|...+..-
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555544433
No 91
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=53.59 E-value=40 Score=22.58 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 231 AAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 231 ~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
++|..+|.|...++..+.++..+.+.
T Consensus 20 eelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555444443
No 92
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=53.32 E-value=80 Score=26.48 Aligned_cols=45 Identities=16% Similarity=0.044 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eE 261 (269)
.++.+|+.+-+.....++.+..|...+..++..++.+...|.+|-
T Consensus 82 ~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 82 QEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555555555555555555555555443
No 93
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=53.16 E-value=28 Score=25.44 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 233 IEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 233 LeeLEkE~~~l~~EL~~le~E~~ 255 (269)
...+..+...|..++..|..|..
T Consensus 45 ~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 45 HSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 94
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=52.79 E-value=66 Score=23.62 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 188 VTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 188 ~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
+..|++.|..-+..|+ .++.+++.+-.....+-+.|-.-+-.++.||....
T Consensus 3 l~~e~~~~~~~i~~lE-------------~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 3 SARERDTSRRLLAEKE-------------REMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666766666554 35666666666667777777777778888887665
No 95
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=52.77 E-value=1e+02 Score=30.37 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHhc
Q 024294 178 SDKLDKEVDDVTRDIE----AYEACLQRLEG 204 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d----~Y~~fL~~L~~ 204 (269)
|..++++|..+++... +|..-|..++.
T Consensus 11 la~yq~elarvqkana~aka~Ye~~~ae~~a 41 (497)
T 3iox_A 11 LTAYQTELARVQKANADAKAAYEAAVAANNA 41 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555554432 35555554443
No 96
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=52.69 E-value=73 Score=24.11 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 221 ~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
.|-+|-+.|.-.+.++|.|+-+.+..|++-.+|...
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~ 58 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQ 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344444444444555554444444444444333333
No 97
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=51.93 E-value=91 Score=25.01 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
|+.-.+.|.+|++|..++..|+...-++.+.|-
T Consensus 87 ee~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll 119 (132)
T 1ykh_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLM 119 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677777777777777776666665543
No 98
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=51.76 E-value=23 Score=26.47 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 228 KLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
.+...|..+|.+...+..++...
T Consensus 32 ~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 32 TSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 99
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=51.57 E-value=1.2e+02 Score=36.25 Aligned_cols=35 Identities=11% Similarity=0.220 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024294 171 LECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (269)
Q Consensus 171 ~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e 205 (269)
.|-.......|.++-.++...++.|..=|.+|...
T Consensus 1898 Leli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et 1932 (3245)
T 3vkg_A 1898 LDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDT 1932 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677788888888899999999999754
No 100
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=51.41 E-value=67 Score=23.72 Aligned_cols=46 Identities=11% Similarity=0.029 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
.++...+..||..-+-+...|++|-....+-..+|..++.+.+.|.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~ 55 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 55 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566555555555566666555555555555555555544
No 101
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=51.25 E-value=1e+02 Score=25.40 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~ 249 (269)
.+|-..|-...+.++....-|= .. ..++++-.+.+..|++|-+.+.++|++.-++.+.+-..+..
T Consensus 60 ~ela~dli~kakqIe~LIdsLP---g~---~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~ 124 (151)
T 1yke_B 60 DELSTDIILKTRQINKLIDSLP---GV---DVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDS 124 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT---TS---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCC---CC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455554443332 21 13566677777777777666666666665555555444443
No 102
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=51.21 E-value=1.2e+02 Score=28.48 Aligned_cols=49 Identities=12% Similarity=0.331 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY 264 (269)
Q Consensus 216 ~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~y 264 (269)
+..+..|..--..|.++|+.......+++.+|..+.-+.-+|.+.-.+|
T Consensus 211 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~ 259 (373)
T 3hhm_B 211 KSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQY 259 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 3334444444445555555544555555555555555555554443333
No 103
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=51.17 E-value=24 Score=26.54 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
+..|+.++..+..+++.|.++...|..+|.+|+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556777777777777777777777777776653
No 104
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=50.93 E-value=25 Score=34.40 Aligned_cols=21 Identities=19% Similarity=0.223 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024294 231 AAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 231 ~eLeeLEkE~~~l~~EL~~le 251 (269)
++.++|..+.+++++++.+++
T Consensus 78 ~~~~~l~~~i~~le~~~~~~~ 98 (485)
T 3qne_A 78 AEKEKLSNEKKEIIEKEAEAD 98 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 105
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=50.65 E-value=19 Score=26.39 Aligned_cols=31 Identities=13% Similarity=0.286 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~ 249 (269)
+..|+.+...|..+++.|.++...+.++|.+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555543
No 106
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=50.54 E-value=1.6e+02 Score=28.91 Aligned_cols=58 Identities=9% Similarity=0.122 Sum_probs=41.7
Q ss_pred CChhhhHHHHHHHHHHhc-CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024294 143 SGFHSTITVLKRAFEIAT-SQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (269)
Q Consensus 143 ~~ls~~i~~l~~lFdILS-~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e 205 (269)
.++..+|..|.+.-+=++ ..+++. -=+..|.+.|.+.+.+++.--..|..|...|+..
T Consensus 61 rdv~~rI~kLkn~L~~~s~s~~~s~-----~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~r 119 (491)
T 1m1j_A 61 QNYSQRIDNIRQQLADSQNKYKTSN-----RVIVETINILKPGLEGAQQLDENYGHVSTELRRR 119 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhcchHH-----HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 467777777765444443 334443 3478888999999999998888999998888753
No 107
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=50.43 E-value=1.6e+02 Score=27.28 Aligned_cols=75 Identities=17% Similarity=0.246 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHhcccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 177 LSDKLDKEVDDVTR---DIEAYEACLQRLEGEAR-DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 177 Lle~Ld~ql~~~~~---E~d~Y~~fL~~L~~e~~-~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
-.++|+.++..++. .+-+|...|.+|..... ..++..++-..++...+.|+.+..+-.++...+.+|+.+|..|-
T Consensus 25 ~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~Ere~~~~Rd~~a~~k~~Le~~ierLs 103 (302)
T 3ibp_A 25 EQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLS 103 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566666555554 45566777778876532 23455677677766555556666666666666777777776654
No 108
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=50.43 E-value=32 Score=26.93 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQN 240 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~ 240 (269)
+++..|+.|-.+|.++++.||.+.
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 109
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=50.01 E-value=75 Score=23.49 Aligned_cols=13 Identities=31% Similarity=0.394 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIE 234 (269)
Q Consensus 222 Le~EE~~L~~eLe 234 (269)
|+.+...|.+++.
T Consensus 27 le~~Ie~LE~~i~ 39 (89)
T 2lw1_A 27 LPQLLEDLEAKLE 39 (89)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 110
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=49.75 E-value=1.2e+02 Score=25.70 Aligned_cols=89 Identities=12% Similarity=0.128 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
...++..+..+.+-++.|..--+.++....+..+..++.+-..++.+-.......+..++..+.....++..+=...+.+
T Consensus 128 ~~~~~~~~~~l~Kak~~Y~~~c~e~e~~~~~~~s~k~~eK~~~k~~ka~~~Y~~~v~~~n~~~~~~~~~~~~~~~~lQ~l 207 (276)
T 2v0o_A 128 VQTIQSITQALQKSKENYNAKCVEQERLKKEGATQREIEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDI 207 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666666665555443321111234444444444444444555556666666666655665555555555
Q ss_pred HHHHHHhhh
Q 024294 258 KELEERYFF 266 (269)
Q Consensus 258 d~eEe~yWr 266 (269)
+.+=-.+++
T Consensus 208 e~~R~~~lk 216 (276)
T 2v0o_A 208 EETHLIHIK 216 (276)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444443
No 111
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=49.71 E-value=52 Score=30.49 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
..++.++.+|+..-.....+|..|+...+.++..|.+|+.+...|.
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444555566666666666666666655544443
No 112
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.54 E-value=59 Score=22.75 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~E 246 (269)
.+|+.+...|+.+-..|..++..|..+...+..-
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544433
No 113
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.42 E-value=18 Score=25.01 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAE 246 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~E 246 (269)
|+.|-.+|.+++..|.++.+++.+.
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444433
No 114
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=49.40 E-value=70 Score=25.49 Aligned_cols=29 Identities=7% Similarity=0.276 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 176 ~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
..+.+|+.+|..+..+++.-..|++.-..
T Consensus 13 ~~~~ql~~qL~k~~~~r~~Le~~w~~k~E 41 (112)
T 1x79_B 13 LMLRQANDQLEKTMKDKQELEDFIKQSSE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888888775443
No 115
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=48.96 E-value=93 Score=24.24 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 225 EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
|-..+...|..++.+...+...+..++.+...|.
T Consensus 69 el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 69 ELQVLQGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333555666666666666666666666655543
No 116
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=48.71 E-value=1.2e+02 Score=25.33 Aligned_cols=28 Identities=11% Similarity=0.225 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 176 VLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 176 ~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
-=++.-..++..++.+.+.-..-|+.|+
T Consensus 35 ERae~aE~k~~eLEeeL~~v~~nlKsLE 62 (155)
T 2efr_A 35 ERAELSEGKSAELEEELKTVTNNLKSLE 62 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 3334444444444444444444455454
No 117
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=48.42 E-value=73 Score=22.91 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER 263 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~ 263 (269)
++..-..-.+.+..|-+-...+..||+-++.+...|..|--.
T Consensus 18 vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~ 59 (63)
T 2w6a_A 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQ 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhh
Confidence 444444445566677777778888888888888888776543
No 118
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=47.73 E-value=57 Score=22.53 Aligned_cols=32 Identities=9% Similarity=0.170 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~ 245 (269)
+++.+...|+.+=..|..++..|..+...|..
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555444433
No 119
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=47.33 E-value=98 Score=24.04 Aligned_cols=85 Identities=11% Similarity=0.207 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--c--c--------------cC--------------CHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA--R--D--------------VL--------------SEADFLKEKLKI 222 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~--~--~--------------~~--------------seeel~~El~~L 222 (269)
+..++.+..++..+......|...++.|+.-. . + ++ -+..+.+.+..|
T Consensus 14 ~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l 93 (133)
T 1fxk_C 14 QSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESI 93 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHH
Confidence 34566777777777777778888777665411 1 0 00 012333455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
+.....+...++.+++....+.+++..++.+.+++-+
T Consensus 94 ~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6667777777888888888888888888777766643
No 120
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=47.32 E-value=1e+02 Score=24.18 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhcccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 187 DVTRDIEAYEACLQRLEGEARDV--LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (269)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~e~~~~--~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~E 246 (269)
.+..+...|..++.-|+.+..-. -+. ..|..+.+++..+...|..+++++..+-..
T Consensus 11 ~L~~~~~~l~~L~~lL~~E~~~L~~~d~----~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~ 68 (157)
T 2fup_A 11 LFAEDIGHANQLLQLVDEEFQALERREL----PVLQQLLGAKQPLMQQLERNGRARAEILRE 68 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677888888777653210 011 266677778888888888888887766543
No 121
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=46.63 E-value=2.2e+02 Score=27.99 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 189 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETE 237 (269)
Q Consensus 189 ~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLE 237 (269)
+.+..+|..-|.++++...+ ..++-++.+..+..+-++..+|.+.+.
T Consensus 8 q~~la~yq~elarvqkana~--aka~Ye~~~ae~~a~n~~i~aeNeaik 54 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANAD--AKAAYEAAVAANNAANAALTAENTAIK 54 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34555677777777664322 223333334444443333444444333
No 122
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=46.63 E-value=33 Score=22.04 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 227 RKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 227 ~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
....+.+++|+++.+.|+.++..||
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 3445667777777777777776553
No 123
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=46.51 E-value=96 Score=24.56 Aligned_cols=24 Identities=8% Similarity=0.120 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 176 VLSDKLDKEVDDVTRDIEAYEACL 199 (269)
Q Consensus 176 ~Lle~Ld~ql~~~~~E~d~Y~~fL 199 (269)
.=|++|+.++...+..--.=..=|
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKL 58 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKL 58 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554444333333
No 124
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.59 E-value=51 Score=24.05 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEER 263 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~ 263 (269)
|..++..|+.....+..|...|..+...|..+=+.
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555556666666666666665555433
No 125
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=45.51 E-value=1.1e+02 Score=24.34 Aligned_cols=51 Identities=10% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhc
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL---KSKRFKELEERYFFNI 268 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~---E~~~Ld~eEe~yWre~ 268 (269)
++..|...-..+.+.|.....+..++.+++.+.++ ...-|..+=+-|-.||
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF 78 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADF 78 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 126
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=45.47 E-value=98 Score=23.51 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 231 AAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 231 ~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
.+|..-.++.+.++.+|.........|+.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444444444444443
No 127
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=45.42 E-value=1.1e+02 Score=24.07 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
|-..|.......-..+.+|+.+...|..|-..|..|.+.-.++
T Consensus 52 e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 52 ENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3334444445555667777777777777777666665544433
No 128
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=44.88 E-value=48 Score=25.17 Aligned_cols=39 Identities=15% Similarity=0.332 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
+.++..+...|+.|=..|..++..|++|...+..-+.++
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 345566677777777777777777777777666655543
No 129
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=44.66 E-value=1.2e+02 Score=24.29 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
+..|-..|-...+.++....-|=.+ ..++++-.+.+..|++|-+.+.++|++.-++.+.+-..+..+
T Consensus 59 ~~ela~dli~k~kqIe~LIdsLP~~------~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 59 IDELSTDIILKTRQINKLIDSLPGV------DVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTT------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555444443322 136677777888887777777777776666666555555443
No 130
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=44.13 E-value=94 Score=22.90 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024294 181 LDKEVDDVTRDIEAYEACLQRL 202 (269)
Q Consensus 181 Ld~ql~~~~~E~d~Y~~fL~~L 202 (269)
+..++..++.+.+....-+..+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~l 26 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEM 26 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3444555555544444444443
No 131
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=43.53 E-value=3.6 Score=29.99 Aligned_cols=22 Identities=18% Similarity=0.548 Sum_probs=17.0
Q ss_pred CCCccccCCCCcceecccCCcce
Q 024294 9 KGRTLSVDPNVPRWVCQNCRHFL 31 (269)
Q Consensus 9 ~~~~~~~~~~~~~~~Cq~C~~~l 31 (269)
+|.+..| +++|.|+|+.|---+
T Consensus 25 ~G~~~~I-~~Vp~~~C~~CGE~~ 46 (78)
T 3ga8_A 25 RGRKTVL-KGIHGLYCVHCEESI 46 (78)
T ss_dssp TTEEEEE-EEEEEEEETTTCCEE
T ss_pred CCEEEEE-cCceeEECCCCCCEE
Confidence 5666666 799999999997644
No 132
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=43.00 E-value=48 Score=30.22 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNA 245 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~ 245 (269)
+++.|+++.++|.+++++||+++.....
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555555556666666666555444433
No 133
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.35 E-value=46 Score=22.92 Aligned_cols=31 Identities=10% Similarity=-0.004 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNA 241 (269)
Q Consensus 211 seeel~~El~~Le~EE~~L~~eLeeLEkE~~ 241 (269)
+.+.|+.|...|+.+-..|.++++++.+...
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777777777777777776665543
No 134
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.29 E-value=2.1e+02 Score=27.27 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
+|++.+.-|++--..-+..|+.|+...+.+..+|+.||...
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555677777777777777777776544
No 135
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=42.23 E-value=23 Score=21.42 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 221 KIEEEERKLEAAIEETEKQNAEV 243 (269)
Q Consensus 221 ~Le~EE~~L~~eLeeLEkE~~~l 243 (269)
.|++.-++|.+++..||-|.+.+
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 45555566666666666555444
No 136
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=42.13 E-value=1.9e+02 Score=25.83 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
++..-..+..++.++++++.++++++..++..
T Consensus 97 ~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 97 AEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444455566666666666666666666666
No 137
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=41.74 E-value=1.2e+02 Score=23.46 Aligned_cols=35 Identities=3% Similarity=-0.113 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~ 248 (269)
.....+..++.+-......|.+..+++..++.-..
T Consensus 85 ~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~e 119 (150)
T 3ajw_A 85 QHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQD 119 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555556666666666665554443
No 138
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=41.20 E-value=72 Score=23.91 Aligned_cols=8 Identities=25% Similarity=0.310 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 024294 185 VDDVTRDI 192 (269)
Q Consensus 185 l~~~~~E~ 192 (269)
+..++.+.
T Consensus 15 lq~~E~rN 22 (79)
T 3cvf_A 15 VQDLETRN 22 (79)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 33333333
No 139
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=40.95 E-value=86 Score=21.57 Aligned_cols=10 Identities=20% Similarity=0.425 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 024294 229 LEAAIEETEK 238 (269)
Q Consensus 229 L~~eLeeLEk 238 (269)
|...|++.-.
T Consensus 28 L~~~L~~AR~ 37 (51)
T 3m91_A 28 LMETLKEARQ 37 (51)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 140
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=40.62 E-value=36 Score=30.74 Aligned_cols=39 Identities=18% Similarity=0.145 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
+..|+.+-..|.+..+.|..++.++..||..+++|.++|
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444455555555555555555555555544
No 141
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=40.54 E-value=1.4e+02 Score=29.01 Aligned_cols=23 Identities=4% Similarity=-0.021 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 180 KLDKEVDDVTRDIEAYEACLQRL 202 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d~Y~~fL~~L 202 (269)
.+..+++.++.++..-..-+.++
T Consensus 48 ~~~~~~~~l~~~rN~~sk~i~~~ 70 (484)
T 3lss_A 48 RTQFLTEASKKLINICSKAVGAK 70 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444333
No 142
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=40.42 E-value=68 Score=23.77 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
+.++..++..|..-.+-....|..+|++...|+..|..++...
T Consensus 23 I~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rl 65 (72)
T 2xu6_A 23 IRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444555555555555566666666666666666666655443
No 143
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=39.67 E-value=33 Score=26.30 Aligned_cols=21 Identities=14% Similarity=0.400 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKE 249 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~ 249 (269)
+...|..+|.+...+..++..
T Consensus 42 ~q~~i~~lE~eL~~~r~e~~~ 62 (95)
T 3mov_A 42 SRRMLTDKEREMAEIRDQMQQ 62 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 144
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=39.44 E-value=15 Score=36.38 Aligned_cols=45 Identities=13% Similarity=0.313 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
++...+..++++-+.+..+|.+.+..-..|+++++.+++|...|.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~ 383 (575)
T 2i1j_A 339 EYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELE 383 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555444444444444444444443
No 145
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=39.14 E-value=1.4e+02 Score=23.64 Aligned_cols=39 Identities=8% Similarity=0.165 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 221 ~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
.|++....+.+++.+|++.++.|+..+...+......++
T Consensus 85 ~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~ 123 (142)
T 3gp4_A 85 LLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQE 123 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666666654443333
No 146
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=39.11 E-value=1.4e+02 Score=23.64 Aligned_cols=34 Identities=6% Similarity=0.185 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~ 252 (269)
+..|+++.++|.+.+..|+...+..+..+...+.
T Consensus 90 ~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~ 123 (142)
T 3gp4_A 90 RIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQE 123 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333333
No 147
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=38.97 E-value=1.5e+02 Score=23.71 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 211 SEADFLKEKLKIEEEERKLEAAIEETE 237 (269)
Q Consensus 211 seeel~~El~~Le~EE~~L~~eLeeLE 237 (269)
+.++|+.|+...|.+--.+.+.|+..+
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~ 49 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAE 49 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666555
No 148
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=38.60 E-value=85 Score=28.17 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
+.++...++.|..-.+.+.+.|..+|++...|+.+|..++....
T Consensus 179 I~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rie 222 (242)
T 3uux_B 179 IRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLD 222 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34455566666666666666677777777777777666665543
No 149
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=38.45 E-value=40 Score=25.43 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 177 LSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
-+..|+..++.+++||+-|-.=|+.++-
T Consensus 9 ei~eLk~~ve~lEkERDFYF~KLRdIEi 36 (82)
T 3tq7_B 9 QLVDLKLTVDGLEKERDFYFSKLRDIEL 36 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999999999999998753
No 150
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=38.31 E-value=1.1e+02 Score=26.45 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
|..|-..|.++|+..+.|.+.|..++..++....
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444444444444444444444444444444443
No 151
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=38.20 E-value=1.5e+02 Score=23.58 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024294 183 KEVDDVTRDIEAYEACLQRL 202 (269)
Q Consensus 183 ~ql~~~~~E~d~Y~~fL~~L 202 (269)
..++.+.+|.+.-..-|+++
T Consensus 15 ~~Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 152
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=38.08 E-value=77 Score=20.58 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 231 AAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 231 ~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
+|=+.|.++.+.-+.||..|+.+..+|.
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3334444555555555555555555443
No 153
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=38.08 E-value=97 Score=24.60 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 187 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (269)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~ 245 (269)
.+..+...|..++.-|+.+..-....-+. ..|..+-++...+...|..++..+..+-.
T Consensus 12 ~L~~~~~~l~~L~~lL~~E~~~L~~~~d~-~~L~~i~~~K~~ll~~L~~~~~~R~~~l~ 69 (154)
T 3opc_A 12 CLERENALVVEFLHALEAETEALMDRRAH-ESLQAAVQRKETLADDLAQLGAERDALLS 69 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777776553211110111 25666777777778888888777776644
No 154
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=37.78 E-value=86 Score=24.78 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
++..|.++-..|...++.||+||.=.=.-|+.++
T Consensus 19 ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 19 TIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555443333333333
No 155
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.77 E-value=58 Score=30.96 Aligned_cols=43 Identities=23% Similarity=0.246 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
++..++++|+.+-.-|..+-+.++.+...+..++..++++.++
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~ 88 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKR 88 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444454444444444444444444444444444444433
No 156
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=37.36 E-value=1.6e+02 Score=23.52 Aligned_cols=6 Identities=17% Similarity=0.672 Sum_probs=2.2
Q ss_pred HHHHHH
Q 024294 190 RDIEAY 195 (269)
Q Consensus 190 ~E~d~Y 195 (269)
+|+..|
T Consensus 77 ~eIk~~ 82 (148)
T 3gpv_A 77 QKIKQF 82 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 157
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=36.69 E-value=1.9e+02 Score=24.43 Aligned_cols=25 Identities=20% Similarity=0.427 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 220 LKIEEEERKLEAAIEETEKQNAEVN 244 (269)
Q Consensus 220 ~~Le~EE~~L~~eLeeLEkE~~~l~ 244 (269)
.+++.+-+.|...|-.||++++.++
T Consensus 114 ~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 114 EKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344455555555666666666665
No 158
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=35.58 E-value=1e+02 Score=25.44 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 225 EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
-|+...+.|.+|++|..++..|+.+.-++.+.|-+
T Consensus 86 seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~ 120 (151)
T 1yke_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLR 120 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888888888888777666665443
No 159
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=35.09 E-value=52 Score=31.13 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELK 248 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~ 248 (269)
+..+|++++++..++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~ 99 (425)
T 2dq3_A 80 LKEEIDRLEEELRKVEEELK 99 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 160
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=35.04 E-value=1e+02 Score=20.83 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024294 236 TEKQNAEVNAELKELELK 253 (269)
Q Consensus 236 LEkE~~~l~~EL~~le~E 253 (269)
||+-.+.+..||..++.|
T Consensus 29 lekiianlrdeiarlene 46 (52)
T 3he5_B 29 LEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 161
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=34.66 E-value=78 Score=24.61 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~ 245 (269)
...|++|+..|+.+|+.|-+.+..+.+....+-.
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567788888888888888877777776665554
No 162
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=34.54 E-value=43 Score=33.08 Aligned_cols=17 Identities=12% Similarity=0.417 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 024294 187 DVTRDIEAYEACLQRLE 203 (269)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~ 203 (269)
.+++++..|..=|..++
T Consensus 332 ~~~~~~~~~~~~~~~~~ 348 (575)
T 2i1j_A 332 RAEKKQQEYQDRLRQMQ 348 (575)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 34445555555555444
No 163
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=34.50 E-value=16 Score=38.96 Aligned_cols=34 Identities=32% Similarity=0.608 Sum_probs=26.1
Q ss_pred ccCCCCcceecccCCcceeee-------------------------ccccchhhhcccc
Q 024294 14 SVDPNVPRWVCQNCRHFLCIV-------------------------GVDSYADKYLNDS 47 (269)
Q Consensus 14 ~~~~~~~~~~Cq~C~~~l~i~-------------------------g~d~~~~~~~~~~ 47 (269)
-|||=.|+|+|.+|++.=.+. |-|...++|.+--
T Consensus 495 eVDPl~phy~c~~c~~~ef~~~~~~~~g~dlp~k~cp~cg~~~~~dg~~LlFERFLnpe 553 (1041)
T 3f2b_A 495 EVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTKYKKDGHDIPFETFLGFK 553 (1041)
T ss_dssp SCCCSCSEEECTTTCCEEECCSSCCSCGGGSCCCBCTTTCCBCEEECCCCCTHHHHTTT
T ss_pred CcCCCcccccCccccccccccccccccccCCccccCccccccccccCCCcChhhccCCC
Confidence 489999999999999743332 4677789998864
No 164
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=34.40 E-value=60 Score=22.94 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELEL 252 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~ 252 (269)
|..+++.|+.+...|..++..|..
T Consensus 35 Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 35 LEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555543
No 165
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=34.36 E-value=64 Score=20.19 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 024294 239 QNAEVNAELKELELK 253 (269)
Q Consensus 239 E~~~l~~EL~~le~E 253 (269)
|.+.+..|+.++.-|
T Consensus 10 elaaikkelaaikfe 24 (34)
T 3r4h_A 10 ELAAIKKELAAIKFE 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 166
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=34.30 E-value=1.7e+02 Score=23.02 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
...|......|...|.+++...+........+..+.+.+..+
T Consensus 71 ~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e 112 (129)
T 2fxo_A 71 CDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDE 112 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555443
No 167
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=34.29 E-value=1.8e+02 Score=23.39 Aligned_cols=8 Identities=13% Similarity=0.206 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 024294 188 VTRDIEAY 195 (269)
Q Consensus 188 ~~~E~d~Y 195 (269)
+..+.+.|
T Consensus 34 Lk~e~e~l 41 (155)
T 2oto_A 34 LKARLENA 41 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 168
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.26 E-value=1.6e+02 Score=22.81 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 024294 180 KLDKEVDDVTRDIEA 194 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d~ 194 (269)
.|+.++..++.|...
T Consensus 16 ~le~~~~~~~~e~~~ 30 (97)
T 2eqb_B 16 TLKRELSDRDDEVKR 30 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHH
Confidence 334444444444333
No 169
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=34.18 E-value=22 Score=29.69 Aligned_cols=29 Identities=7% Similarity=0.221 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
....++.++.+.+.+.+++.+++.+...|
T Consensus 78 sr~akk~~ea~la~l~~~~~~LeAE~aKL 106 (146)
T 2xnx_M 78 NRNLLGNAKLELDQLSSEKEQLTIEKAKL 106 (146)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444445555555555555555544444
No 170
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=33.43 E-value=41 Score=25.66 Aligned_cols=26 Identities=12% Similarity=0.300 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEK 238 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEk 238 (269)
+.|+.++..|+.+..+|.++|..++.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566555555555555544
No 171
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=33.18 E-value=61 Score=24.30 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
.++.++.+=..|...+..++...+.-..+-..+
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~ 46 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAERERA 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433333333333
No 172
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=32.88 E-value=1.3e+02 Score=22.93 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 231 AAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 231 ~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
.+...||.+...+..++..+..|..++..+
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e 77 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARE 77 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555444443
No 173
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=32.81 E-value=49 Score=23.00 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAE 242 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~ 242 (269)
|+.+...|+.+-..|..++..|..+...
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 174
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.60 E-value=62 Score=30.75 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
.++.++...+...+.++.|+.++..++.+...+++|...|+
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~ 66 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQ 66 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666666667777788888888877777776665543
No 175
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=32.56 E-value=29 Score=32.97 Aligned_cols=20 Identities=25% Similarity=0.420 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEK 238 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEk 238 (269)
...|..+-+.+.+++.+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 2dq3_A 77 VKELKEEIDRLEEELRKVEE 96 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 176
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=32.08 E-value=1.5e+02 Score=21.78 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAYEACL 199 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL 199 (269)
++.|..+++.++.++.....-|
T Consensus 24 le~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444
No 177
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=31.81 E-value=56 Score=23.88 Aligned_cols=53 Identities=26% Similarity=0.249 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 024294 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAI 233 (269)
Q Consensus 177 Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eL 233 (269)
..+..++.+ ..++.|..||+-|..-+.+..+..++......+-..-.+|+...
T Consensus 14 Ff~kVK~~l----~~~~~Y~eFLk~lnlf~q~~Id~~eLv~~V~~~lg~~pdL~~~F 66 (75)
T 2ld7_B 14 FFDKVRKAL----RSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELFNWF 66 (75)
T ss_dssp HHHHHHHHH----CSHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHTTCHHHHHHH
T ss_pred HHHHHHHHc----CCHHHHHHHHHHHHHhhhcCcCHHHHHHHHHHHHccCHHHHHHH
Confidence 345555555 34689999999998877677788888876666543333444443
No 178
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=31.09 E-value=1.3e+02 Score=24.39 Aligned_cols=26 Identities=8% Similarity=0.277 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024294 180 KLDKEVDDVTRDIEAYEACLQRLEGE 205 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d~Y~~fL~~L~~e 205 (269)
.|...+..++++...|..-|+.+..+
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~ 35 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDES 35 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 46778888888888777766655443
No 179
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=30.65 E-value=2e+02 Score=22.67 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEETEK 238 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEk 238 (269)
..+..|++|..---..|+.+|-
T Consensus 32 ~~ve~lEkERDFYF~KLRdIEi 53 (106)
T 4e61_A 32 GTVSTLEIEREFYFNKLRDIEI 53 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554444455554443
No 180
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=30.09 E-value=1.7e+02 Score=23.35 Aligned_cols=82 Identities=15% Similarity=0.265 Sum_probs=51.8
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHhccc-cc--c--------------C--------------CHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDV---TRDIEAYEACLQRLEGEA-RD--V--------------L--------------SEADFLKEKLKIE 223 (269)
Q Consensus 178 le~Ld~ql~~~---~~E~d~Y~~fL~~L~~e~-~~--~--------------~--------------seeel~~El~~Le 223 (269)
++.|..++..+ ......|...++.|+.-. .+ + + -+..+.+.+..++
T Consensus 25 ~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~ 104 (151)
T 2zdi_C 25 AQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLE 104 (151)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeEEEecHHHHHHHHH
Confidence 34555566666 777777777777765432 11 0 0 0133445555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 224 ~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
.....+...++.+++..+.+.+++..++...+++.+
T Consensus 105 ~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 105 KRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777888888888888888887777766654
No 181
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=30.05 E-value=93 Score=19.35 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 024294 237 EKQNAEVNAELKEL 250 (269)
Q Consensus 237 EkE~~~l~~EL~~l 250 (269)
|.+.-++++|..++
T Consensus 14 eaenyqleqevaql 27 (33)
T 1fmh_A 14 EAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHH
Confidence 33333333333333
No 182
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=29.99 E-value=3.5e+02 Score=25.49 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024294 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYFFN 267 (269)
Q Consensus 227 ~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~yWre 267 (269)
..-...|..+.+.+.....++..+=...+.|+++=-.|+++
T Consensus 206 ~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~ 246 (486)
T 3haj_A 206 EKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFRE 246 (486)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555555555554455544
No 183
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=29.53 E-value=2.2e+02 Score=25.01 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024294 231 AAIEETEKQNAEVNAEL 247 (269)
Q Consensus 231 ~eLeeLEkE~~~l~~EL 247 (269)
.+|+.++.+...+..++
T Consensus 129 a~~~~~~~~l~~~~~~l 145 (369)
T 4dk0_A 129 AEMDVVQENIKQAEIEV 145 (369)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 184
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=29.42 E-value=2e+02 Score=22.33 Aligned_cols=22 Identities=5% Similarity=-0.028 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIE 234 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLe 234 (269)
++|+.|+...|.+--.+.+.|+
T Consensus 8 ~eLq~e~~~~E~QL~~A~QKLk 29 (96)
T 2ic9_A 8 KEVQDNITLHEQRLVTTRQKLK 29 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443333333333333333
No 185
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.39 E-value=28 Score=20.98 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024294 236 TEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 236 LEkE~~~l~~EL~~le~E~~~L 257 (269)
||=|...+++.|.++..+...|
T Consensus 5 lefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444433
No 186
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=29.33 E-value=1.3e+02 Score=29.84 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024294 178 SDKLDKEVDDVTRDIEAY 195 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y 195 (269)
..++++|.+...+-++.+
T Consensus 293 ~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 293 PDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 477887777655555544
No 187
>1x3a_A Synapse associated protein 1; BSD domain, homolog of the drosophila SAP47, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=29.12 E-value=12 Score=29.01 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcC
Q 024294 245 AELKELELKSKRFKELEERYFFNIY 269 (269)
Q Consensus 245 ~EL~~le~E~~~Ld~eEe~yWre~~ 269 (269)
..|+.+..++---.-.|+.||+-||
T Consensus 57 p~L~~l~~~LVP~~v~e~~FW~rYF 81 (100)
T 1x3a_A 57 ELLSKMRFALVPKLVKEEVFWRNYF 81 (100)
T ss_dssp HHHHHHHHHTTTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCHHHHHHHHH
Confidence 4555566555555567888999885
No 188
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=28.94 E-value=1.9e+02 Score=21.85 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAE 242 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~ 242 (269)
++.+|+..+..-..|..+++.++++..+
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344554544444454444444444333
No 189
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=28.54 E-value=1.9e+02 Score=21.69 Aligned_cols=23 Identities=4% Similarity=0.013 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEE 235 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLee 235 (269)
++|+.|+...|.+--.+.+.|+.
T Consensus 8 ~eLq~e~~~~E~QL~~A~QKLkd 30 (78)
T 2ic6_A 8 KEVQDNITLHEQRLVTTRQKLKD 30 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333444433
No 190
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=28.14 E-value=2.1e+02 Score=24.68 Aligned_cols=41 Identities=27% Similarity=0.390 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (269)
Q Consensus 212 eeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~ 252 (269)
...|..|...|.++-....++++.|.++.+.+.++....+.
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~ 62 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKT 62 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 45566666666666666666666666666666666655443
No 191
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=27.99 E-value=1.9e+02 Score=21.57 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 223 e~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
..-...|...++.++.+.+.++.++..++.+...+..
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555666666666666666666666555543
No 192
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=27.95 E-value=1.1e+02 Score=21.49 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 231 AAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 231 ~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
+.+.+|+.+.+.|..+-..|..+...|.+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666666666666655543
No 193
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=27.84 E-value=1.9e+02 Score=21.48 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~ 252 (269)
+...|...-+.+......|.+.+.+++..|..++.
T Consensus 50 ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 50 QKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444555555555555555543
No 194
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=27.81 E-value=2.9e+02 Score=24.29 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 231 AAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 231 ~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
.++..++.+.+.+.++++.++.+.+.
T Consensus 122 ~~~~~a~a~~~~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 122 ATLNNAKAEMDVVQENIKQAEIEVNT 147 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544433
No 195
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=27.78 E-value=3.1e+02 Score=23.98 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=43.6
Q ss_pred HHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 194 AYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 194 ~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
-....|.+|..- ...-.+-.+.+++|+.+-.....+-.+|++-.+.+.+|+..|+...+.|+
T Consensus 10 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 10 EHEDILNKLLDP---ELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 344556666432 12334444567778888888888888899999999999998887776664
No 196
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=27.51 E-value=2.3e+02 Score=25.30 Aligned_cols=18 Identities=0% Similarity=0.219 Sum_probs=12.2
Q ss_pred ChhhhHHHHHHHHHHhcC
Q 024294 144 GFHSTITVLKRAFEIATS 161 (269)
Q Consensus 144 ~ls~~i~~l~~lFdILS~ 161 (269)
.+...+..+..+.++|..
T Consensus 64 ~~~~~~~k~~~~~~~L~~ 81 (357)
T 3rrk_A 64 RWEAVVSQAEQSLTVVGL 81 (357)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 455666777777777753
No 197
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=27.42 E-value=2.3e+02 Score=24.67 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E 253 (269)
+..|+.+...|.+++.++.....++.++..-++..
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR 95 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRR 95 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 198
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=27.23 E-value=1.9e+02 Score=21.35 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAE 242 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~ 242 (269)
+...+..||++|..|...|..++...+.
T Consensus 40 vldRlA~lEqdE~~LE~~l~~i~~rle~ 67 (72)
T 2xu6_A 40 LLGKIANIEQNQLMLEDNLKQIDDRLDF 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888877765443
No 199
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=26.75 E-value=24 Score=27.02 Aligned_cols=10 Identities=40% Similarity=0.976 Sum_probs=8.9
Q ss_pred ccCCCCccee
Q 024294 14 SVDPNVPRWV 23 (269)
Q Consensus 14 ~~~~~~~~~~ 23 (269)
+|||++.-|.
T Consensus 3 pvdp~lepw~ 12 (86)
T 3mi9_C 3 PVDPRLEPWK 12 (86)
T ss_dssp CCCTTSCGGG
T ss_pred CCCCCccccc
Confidence 7999999886
No 200
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=26.56 E-value=2.7e+02 Score=26.24 Aligned_cols=6 Identities=33% Similarity=0.290 Sum_probs=2.6
Q ss_pred eeeecc
Q 024294 31 LCIVGV 36 (269)
Q Consensus 31 l~i~g~ 36 (269)
|.|.|.
T Consensus 43 L~i~nf 48 (517)
T 4ad8_A 43 LEIRNL 48 (517)
T ss_dssp EEEESB
T ss_pred eecccc
Confidence 444443
No 201
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=26.48 E-value=4.8e+02 Score=25.76 Aligned_cols=12 Identities=17% Similarity=0.224 Sum_probs=5.8
Q ss_pred ceecccCCccee
Q 024294 21 RWVCQNCRHFLC 32 (269)
Q Consensus 21 ~~~Cq~C~~~l~ 32 (269)
.|+......++.
T Consensus 179 ~wvvRD~~l~~~ 190 (592)
T 1f5n_A 179 VWTLRDFSLDLE 190 (592)
T ss_dssp EEEEETCCCCCC
T ss_pred EEEEecccchhc
Confidence 355555544443
No 202
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=26.14 E-value=75 Score=23.55 Aligned_cols=32 Identities=13% Similarity=0.314 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~ 244 (269)
.++..+...|+.|=..|..++..|.+|...|.
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555556666665555554443
No 203
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=25.90 E-value=76 Score=24.24 Aligned_cols=9 Identities=56% Similarity=1.324 Sum_probs=7.6
Q ss_pred ccCCCCcce
Q 024294 14 SVDPNVPRW 22 (269)
Q Consensus 14 ~~~~~~~~~ 22 (269)
+|||++.-|
T Consensus 3 pvDp~lepw 11 (86)
T 1tac_A 3 PVDPNIEPW 11 (86)
T ss_dssp SSSSSSCCC
T ss_pred CcCCCCCcc
Confidence 799998777
No 204
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=25.67 E-value=3e+02 Score=24.65 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l 243 (269)
-+.+.|..|+++|..|..+|..++.-.+.+
T Consensus 195 ~vl~RLA~lEqdEl~LE~eL~~V~~Rief~ 224 (242)
T 3uux_B 195 KLLGKIANIEQNQLLLEDNLKQIDDRLDFL 224 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 356678889999999888888777654443
No 205
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=25.67 E-value=2.3e+02 Score=21.90 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
|...|..+|+.++-++--+.....+..+|
T Consensus 72 LE~RLsKtEKDkAiLELkLaE~~Dek~rL 100 (101)
T 1d7m_A 72 LEARLAKTEKDRAILELKLAEAIDEKSKL 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHhhhhhhhc
Confidence 45566677777777766666655555444
No 206
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.41 E-value=2.8e+02 Score=22.67 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024294 182 DKEVDDVTRDIEAYEACL 199 (269)
Q Consensus 182 d~ql~~~~~E~d~Y~~fL 199 (269)
..++...+..+..|...-
T Consensus 21 ~~~~~~le~l~~~l~~l~ 38 (135)
T 2e7s_A 21 KAAIENYNQLKEDYNTLK 38 (135)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 207
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=25.20 E-value=1.4e+02 Score=21.49 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
|..++..++.+...+..+...|+.+.
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 208
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.80 E-value=74 Score=30.32 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 220 ~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
+.|+.|.+.+..++..++.+...+..+++..+++.+
T Consensus 35 ~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~ 70 (434)
T 4b4t_M 35 KLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIK 70 (434)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555544443
No 209
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.75 E-value=2.4e+02 Score=21.71 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
..+...+++++.++..+.+.+..++....++..-+..+
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l 41 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTL 41 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555544444444433
No 210
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.85 E-value=97 Score=18.48 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEE 226 (269)
Q Consensus 215 l~~El~~Le~EE 226 (269)
+-+|+++|++.-
T Consensus 6 lykeledlqerl 17 (27)
T 3twe_A 6 LYKELEDLQERL 17 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 211
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=23.71 E-value=61 Score=23.28 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~ 254 (269)
..|-.+..+++.+-.++.++|.-++.+..+|+.=|..+|++.
T Consensus 15 ~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v 56 (64)
T 3t97_C 15 TSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESV 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666666666677777777776666666666555443
No 212
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=23.70 E-value=1.6e+02 Score=21.38 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 233 IEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 233 LeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
+.+||.+...-+++|..|+.++.++
T Consensus 27 I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 27 IKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555666666555444
No 213
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=23.69 E-value=2.4e+02 Score=21.36 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
.++.++..++.+-.....+-+.|-.-+-.++.||....
T Consensus 48 ~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYr 85 (95)
T 3mov_A 48 DKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYR 85 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666667777777777776654
No 214
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=23.59 E-value=3.8e+02 Score=23.58 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
..+..++++-..|.+.|+.+..|+....+.|.+.....+++.+.
T Consensus 171 ~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~ 214 (228)
T 3q0x_A 171 FRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQ 214 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777777777777666655543
No 215
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.30 E-value=2.4e+02 Score=21.29 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 224 EEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 224 ~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
.|-..-.++|+.+|++......-|+.|+
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444455555555555555555444
No 216
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=23.25 E-value=38 Score=30.05 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHh
Q 024294 148 TITVLKRAFEIA 159 (269)
Q Consensus 148 ~i~~l~~lFdIL 159 (269)
-.+.+.+++.++
T Consensus 93 ~~r~l~~~l~~~ 104 (250)
T 2ve7_C 93 LVTHLDSFLPIC 104 (250)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 445555666666
No 217
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=23.13 E-value=1.9e+02 Score=20.07 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~ 256 (269)
+.|....+.|+.|-.-|++||+.--.....++.|-..+.+=.+.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~ 49 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQ 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence 44555556666666666666665555555555555444443333
No 218
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=23.04 E-value=2.5e+02 Score=21.26 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024294 230 EAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 230 ~~eLeeLEkE~~~l~~EL~~le 251 (269)
..++..|+.+..++++++..++
T Consensus 7 ~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 7 ESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333
No 219
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=23.01 E-value=2.4e+02 Score=21.15 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~ 259 (269)
.+.+-..|...|..+..+++.+..|+..+..+...+..
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36666777888888888888888888888877776653
No 220
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.00 E-value=77 Score=21.84 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 024294 236 TEKQNAEVNAELKE 249 (269)
Q Consensus 236 LEkE~~~l~~EL~~ 249 (269)
+.++..++..++..
T Consensus 39 l~~e~~~L~~~~~~ 52 (57)
T 2wuj_A 39 VLRKKTELEAKVNE 52 (57)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 221
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.87 E-value=2.6e+02 Score=23.61 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~ 248 (269)
++.....+|..+...|.++...|+.+...+.+.+.
T Consensus 53 ~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~ 87 (174)
T 2p22_A 53 IIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRA 87 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555444444333
No 222
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=22.59 E-value=3.2e+02 Score=23.68 Aligned_cols=83 Identities=16% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAI------EETEKQNAEVNAELK 248 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eL------eeLEkE~~~l~~EL~ 248 (269)
.-+++.+.+-|..+..+ ..|...|+.+....-...+.+++.. +.+|+.-..+...+- .+-.+..++++++|.
T Consensus 215 ~~l~~~l~~al~~~~~d-~~~~~~l~~~g~~gf~~~~~~~y~~-ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (310)
T 3n5l_A 215 DEQKNKLRDFFFKYGAN-AEQKKVLADLQWSKFQASDDDQLLP-IRQLELFKQRTDVANNANLGAEEKAAKLKALDEELA 292 (310)
T ss_dssp HHHHHHHHHHHHHCCCS-HHHHHHHHHTTEEEEEECCGGGGHH-HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC-hhHHHHHHhcCccCceeCCHHHHHH-HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 024294 249 ELELKSKRFKE 259 (269)
Q Consensus 249 ~le~E~~~Ld~ 259 (269)
+|+.....|+.
T Consensus 293 ~~~~~~~~~~~ 303 (310)
T 3n5l_A 293 KLEKRMAEREQ 303 (310)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
No 223
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.35 E-value=2.3e+02 Score=20.71 Aligned_cols=34 Identities=9% Similarity=0.180 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 225 EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
-...|...++.++.+.+.++.++..++.+...+.
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555566655555555555444
No 224
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=22.21 E-value=2e+02 Score=19.82 Aligned_cols=39 Identities=13% Similarity=0.308 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
..++.++.+++.+-+...++-+.|-.-+-.++.||....
T Consensus 10 ~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 10 EELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344556666666666666666777777777777776655
No 225
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=22.13 E-value=3.5e+02 Score=22.62 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACL 199 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL 199 (269)
+.+++.+..++.........+..-+
T Consensus 121 ~~~~~~l~~~L~~l~~~l~~le~~~ 145 (202)
T 2p4w_A 121 NVKMRELAEFLHELNERIREIIEEK 145 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777776666666554433
No 226
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=22.12 E-value=2.5e+02 Score=20.90 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~ 249 (269)
+...+..|..|-++|.-.++++..+...+....++
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555544444444443333
No 227
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.09 E-value=4.9e+02 Score=25.21 Aligned_cols=25 Identities=16% Similarity=0.005 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 180 KLDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
.||.+...+..+.+.-+.-.+.+.+
T Consensus 41 ~ld~~~r~~~~~~~~l~~~rN~~sk 65 (484)
T 3lss_A 41 EADKKWRRTQFLTEASKKLINICSK 65 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666665555555544443
No 228
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=21.60 E-value=2.9e+02 Score=21.67 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 024294 186 DDVTRDIEAYEA 197 (269)
Q Consensus 186 ~~~~~E~d~Y~~ 197 (269)
..+++|+.++..
T Consensus 25 ~lL~~E~~~L~~ 36 (154)
T 3opc_A 25 HALEAETEALMD 36 (154)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 334445555433
No 229
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A
Probab=21.56 E-value=38 Score=33.05 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=18.3
Q ss_pred ccCCCCcceecccCCcceeeecccc
Q 024294 14 SVDPNVPRWVCQNCRHFLCIVGVDS 38 (269)
Q Consensus 14 ~~~~~~~~~~Cq~C~~~l~i~g~d~ 38 (269)
...+.+| ..||.||.|++.+ .|.
T Consensus 387 ~~~~~lp-~~c~~cq~P~~~~-~~~ 409 (491)
T 2inc_A 387 TVPETLP-TICNMCNLPIAHT-PGN 409 (491)
T ss_dssp GSCSSCB-CBCTTTCSBCBCC-CGG
T ss_pred ccCCCCC-CccCCCCCccCcC-CCC
Confidence 4568888 5999999998887 554
No 230
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=21.19 E-value=2.2e+02 Score=20.07 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
.+.+|++---.|...+..||....+-++||..|.+-++
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777888888888888888888887775443
No 231
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=21.09 E-value=2.5e+02 Score=26.39 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 179 DKLDKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 179 e~Ld~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
..+-+++..++.-.+.|..|.+.++
T Consensus 32 ~~~~ke~~~l~~~v~~~~~~~~~~~ 56 (354)
T 3d5a_X 32 QSLSRRYAEMGEVIGLIREYRKVLE 56 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666655443
No 232
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.08 E-value=3e+02 Score=21.54 Aligned_cols=38 Identities=8% Similarity=0.105 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
.+..+..|-++.-.+++.+......+..++..++...+
T Consensus 45 ~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 45 QLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555555555555544433
No 233
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.53 E-value=2.1e+02 Score=19.54 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
|..++..|-+...+|.+.|++...++..|.++
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555544
No 234
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=20.50 E-value=1.7e+02 Score=18.45 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024294 238 KQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 238 kE~~~l~~EL~~le~E~~~Ld 258 (269)
.+.+.+++|+.+..+|....+
T Consensus 9 eeqaaieeeiqaikeeiaaik 29 (36)
T 1bb1_B 9 EEQAAIEEEIQAIKEEIAAIK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 235
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.35 E-value=2.5e+02 Score=26.71 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 231 AAIEETEKQNAEVNAELKELELK 253 (269)
Q Consensus 231 ~eLeeLEkE~~~l~~EL~~le~E 253 (269)
.+|..|+.....++..|..|+.+
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~ 127 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQK 127 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444444444444444444333
No 236
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=20.26 E-value=2.8e+02 Score=20.73 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (269)
Q Consensus 215 l~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld 258 (269)
|..-...|.--...|+..+++|--|++.+..|+.+++.-..+++
T Consensus 21 Ll~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~ 64 (77)
T 2w83_C 21 LLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLE 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566677888888888888888888888876666554
No 237
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.25 E-value=3.1e+02 Score=24.01 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY 264 (269)
Q Consensus 220 ~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~eEe~y 264 (269)
++.-.|+++ ..|.+.-.|...|-.+|..+++|...|.++-+..
T Consensus 99 Wk~lAE~RR--~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eL 141 (209)
T 2wvr_A 99 WKEVAEKRR--KALYEALKENEKLHKEIEQKDNEIARLKKENKEL 141 (209)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 238
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=20.23 E-value=1.3e+02 Score=26.46 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le 251 (269)
++.+.+..+-+.+..++++++++.+++..++.+.+
T Consensus 148 ~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~ 182 (250)
T 2ve7_C 148 WQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT 182 (250)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333333334444444444444444444443333
No 239
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=20.12 E-value=3.8e+02 Score=22.34 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 220 LKIEEEERKLEAAIEETEKQNAEVNAE 246 (269)
Q Consensus 220 ~~Le~EE~~L~~eLeeLEkE~~~l~~E 246 (269)
+.|+.|..+++..|+.-.+++.+|..+
T Consensus 8 ~~Le~Ek~~~~~rI~~K~~~LqeL~~Q 34 (155)
T 2aze_A 8 QNLEVERQRRLERIKQKQSQLQELILQ 34 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433333343333333333333
No 240
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.04 E-value=1.9e+02 Score=19.77 Aligned_cols=17 Identities=41% Similarity=0.413 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024294 234 EETEKQNAEVNAELKEL 250 (269)
Q Consensus 234 eeLEkE~~~l~~EL~~l 250 (269)
..|+.+...|..++..+
T Consensus 32 ~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 32 AVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 241
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.02 E-value=1.7e+02 Score=20.12 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024294 231 AAIEETEKQNAEVNAELKELE 251 (269)
Q Consensus 231 ~eLeeLEkE~~~l~~EL~~le 251 (269)
..+++||+....+...|+.++
T Consensus 14 kk~eeler~lrk~kk~iKklE 34 (50)
T 1a92_A 14 KKLEELERDLRKLKKKIKKLE 34 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444444444444
Done!