Query 024294
Match_columns 269
No_of_seqs 137 out of 197
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 05:45:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024294.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024294hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efka1 a.238.1.4 (A:10-288) C 77.9 8.8 0.00064 30.3 10.3 26 175-200 112-137 (279)
2 d1seta1 a.2.7.1 (A:1-110) Sery 65.3 18 0.0013 25.8 8.5 23 180-202 32-54 (110)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 64.3 23 0.0017 25.7 10.1 41 217-257 88-128 (133)
4 d2azeb1 e.63.1.2 (B:201-301) T 63.2 6.5 0.00048 28.8 5.6 32 229-260 6-37 (101)
5 d1fxka_ a.2.5.1 (A:) Prefoldin 59.5 26 0.0019 24.9 9.7 34 222-255 70-103 (107)
6 d1wu9a1 a.245.1.1 (A:191-249) 52.5 9.4 0.00068 25.6 4.4 26 178-203 10-35 (59)
7 d1nkpa_ a.38.1.1 (A:) Myc prot 50.2 15 0.0011 25.3 5.5 32 219-250 54-85 (88)
8 d2azeb1 e.63.1.2 (B:201-301) T 42.0 29 0.0021 25.1 6.1 33 213-245 4-36 (101)
9 d2cora2 g.39.1.3 (A:8-42) Pinc 40.6 4.4 0.00032 24.7 1.0 13 19-31 6-18 (35)
10 d1ykhb1 a.252.1.1 (B:2-130) RN 38.5 71 0.0052 23.7 9.9 67 176-248 56-122 (129)
11 d1nkpb_ a.38.1.1 (B:) Max prot 38.3 18 0.0013 24.6 4.2 31 219-249 49-79 (83)
12 d1ivsa1 a.2.7.3 (A:797-862) Va 38.1 42 0.0031 21.7 6.0 24 181-204 2-25 (66)
13 d1ykhb1 a.252.1.1 (B:2-130) RN 35.9 52 0.0038 24.5 7.0 35 226-260 86-120 (129)
14 d1seta1 a.2.7.1 (A:1-110) Sery 35.1 68 0.0049 22.4 8.5 12 181-192 40-51 (110)
15 d1qvra2 c.37.1.20 (A:149-535) 34.6 78 0.0057 27.3 9.0 14 179-192 256-269 (387)
16 d1fxka_ a.2.5.1 (A:) Prefoldin 34.4 62 0.0045 22.7 6.9 35 214-248 69-103 (107)
17 d2inca1 a.25.1.2 (A:2-492) Tol 33.7 7.9 0.00057 35.6 2.0 21 13-34 386-406 (491)
18 d1fxkc_ a.2.5.1 (C:) Prefoldin 32.9 70 0.0051 22.9 7.2 35 213-247 4-38 (133)
19 d1nkpa_ a.38.1.1 (A:) Myc prot 29.6 76 0.0056 21.4 6.7 30 228-257 56-85 (88)
20 d1vd4a_ g.41.3.1 (A:) Transcri 27.3 11 0.00082 25.4 1.4 19 15-33 33-51 (62)
21 d2fupa1 a.47.5.1 (A:1-130) Hyp 27.0 99 0.0072 21.8 8.6 57 187-247 10-68 (130)
22 d1bjta_ e.11.1.1 (A:) DNA topo 26.4 58 0.0043 30.9 7.0 45 218-262 710-756 (760)
23 d1gqea_ e.38.1.1 (A:) Polypept 26.0 1.9E+02 0.014 24.7 10.8 16 146-161 5-20 (362)
24 d1rw2a_ a.118.19.1 (A:) C-term 25.5 16 0.0011 28.4 2.2 47 154-205 61-107 (152)
25 d2ap3a1 a.24.27.1 (A:12-196) H 25.0 97 0.0071 21.0 9.1 29 227-255 154-182 (185)
26 d1ab4a_ e.11.1.1 (A:) DNA Gyra 24.4 1.6E+02 0.012 25.9 9.5 19 227-245 443-461 (493)
27 d1mtyd_ a.25.1.2 (D:) Methane 21.3 13 0.00093 34.4 1.0 22 16-37 396-417 (512)
28 d1d4ua2 g.39.1.5 (A:1-36) DNA 21.3 11 0.00079 23.0 0.3 13 163-175 22-34 (36)
29 d1twfi2 g.41.3.1 (I:50-121) RB 21.1 17 0.0013 24.9 1.4 21 13-33 13-35 (72)
No 1
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.86 E-value=8.8 Score=30.32 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 175 RVLSDKLDKEVDDVTRDIEAYEACLQ 200 (269)
Q Consensus 175 d~Lle~Ld~ql~~~~~E~d~Y~~fL~ 200 (269)
..+...++.....+.+-+..|....+
T Consensus 112 ~~~~k~l~~~~~~~~k~k~~y~~~~~ 137 (279)
T d2efka1 112 RRAQQQLENGFKQLENSKRKFERDCR 137 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444433
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=65.30 E-value=18 Score=25.78 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 180 KLDKEVDDVTRDIEAYEACLQRL 202 (269)
Q Consensus 180 ~Ld~ql~~~~~E~d~Y~~fL~~L 202 (269)
.|+.+...+..+.+.-..=-+.+
T Consensus 32 ~ld~~rr~l~~~~e~l~~~rN~~ 54 (110)
T d1seta1 32 ALDREVQELKKRLQEVQTERNQV 54 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444444433
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=64.32 E-value=23 Score=25.74 Aligned_cols=41 Identities=10% Similarity=0.241 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 217 ~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
+.+.-+......+...++.+.++...+.+++..++.+.+++
T Consensus 88 eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l 128 (133)
T d1fxkc_ 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666666666666666666666655554
No 4
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.20 E-value=6.5 Score=28.84 Aligned_cols=32 Identities=6% Similarity=0.132 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 229 LEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 229 L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
|.+||+.|+.+...|+..|..++...+.|.+.
T Consensus 6 L~~El~~L~~~E~~LD~li~~~~~~L~~lted 37 (101)
T d2azeb1 6 LTQDLRQLQESEQQLDHLMNICTTQLRLLSED 37 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45555566666666666666666665555543
No 5
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=59.54 E-value=26 Score=24.87 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 222 Le~EE~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
|...-..+..+++.+++....+..++..++.+..
T Consensus 70 l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555666666666666665555443
No 6
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.54 E-value=9.4 Score=25.59 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024294 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (269)
Q Consensus 178 le~Ld~ql~~~~~E~d~Y~~fL~~L~ 203 (269)
+..|+..++.+++|||-|..=|+.++
T Consensus 10 i~elk~~v~~lEkERdFYF~KLRdIE 35 (59)
T d1wu9a1 10 VNVLKLTVEDLEKERDFYFGKLRNIE 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999775
No 7
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.17 E-value=15 Score=25.31 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~l 250 (269)
+..|+.+...|..+++.+.++...+..++..|
T Consensus 54 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666666555555544
No 8
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.01 E-value=29 Score=25.11 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~ 245 (269)
..|++|+..|+.+|++|-+-+..+.+....+..
T Consensus 4 ~~L~~El~~L~~~E~~LD~li~~~~~~L~~lte 36 (101)
T d2azeb1 4 EGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 36 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 457788888888888888777777766655543
No 9
>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.62 E-value=4.4 Score=24.70 Aligned_cols=13 Identities=23% Similarity=1.030 Sum_probs=10.2
Q ss_pred CcceecccCCcce
Q 024294 19 VPRWVCQNCRHFL 31 (269)
Q Consensus 19 ~~~~~Cq~C~~~l 31 (269)
+-+++||.||.-+
T Consensus 6 lGk~vC~KCh~iI 18 (35)
T d2cora2 6 LGKYICQKCHAII 18 (35)
T ss_dssp CCCCBCTTTCCBC
T ss_pred hhhHHHHHHHhhh
Confidence 4578999999743
No 10
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.52 E-value=71 Score=23.70 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (269)
Q Consensus 176 ~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e~~~~~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~ 248 (269)
..+.+|-.-+-...+.++....-|=-+. .++++-.+.+.+|++|-..+.++|++.-++.+.+-..+.
T Consensus 56 ~~~~elA~dii~kakqId~LI~sLP~~~------~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~ 122 (129)
T d1ykhb1 56 NTIDELSTDIILKTRQINKLIDSLPGVD------VSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTT------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhCCCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555544433221 255555566777766666655555555554444444333
No 11
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.28 E-value=18 Score=24.62 Aligned_cols=31 Identities=13% Similarity=0.286 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (269)
Q Consensus 219 l~~Le~EE~~L~~eLeeLEkE~~~l~~EL~~ 249 (269)
+..|+.++..+..+++.+.++...+..++.+
T Consensus 49 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 79 (83)
T d1nkpb_ 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666555544
No 12
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=38.15 E-value=42 Score=21.74 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 024294 181 LDKEVDDVTRDIEAYEACLQRLEG 204 (269)
Q Consensus 181 Ld~ql~~~~~E~d~Y~~fL~~L~~ 204 (269)
++.++..+.++.+.+...+.+++.
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~ 25 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQR 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777788877777777654
No 13
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.92 E-value=52 Score=24.50 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (269)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~EL~~le~E~~~Ld~e 260 (269)
|+.-.+.|.+|+.|...+++|+...-.+.+.|-+.
T Consensus 86 ee~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~ 120 (129)
T d1ykhb1 86 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRH 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888888888887766666655443
No 14
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=35.07 E-value=68 Score=22.45 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 024294 181 LDKEVDDVTRDI 192 (269)
Q Consensus 181 Ld~ql~~~~~E~ 192 (269)
+..+++.+..++
T Consensus 40 l~~~~e~l~~~r 51 (110)
T d1seta1 40 LKKRLQEVQTER 51 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 15
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=34.58 E-value=78 Score=27.32 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 024294 179 DKLDKEVDDVTRDI 192 (269)
Q Consensus 179 e~Ld~ql~~~~~E~ 192 (269)
+.++.++...+.|+
T Consensus 256 ~~ler~I~qLe~E~ 269 (387)
T d1qvra2 256 DALERKKLQLEIER 269 (387)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 16
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=34.36 E-value=62 Score=22.70 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (269)
Q Consensus 214 el~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL~ 248 (269)
++.+.+..|+.+-..+...++.++++..++...|.
T Consensus 69 ~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666666666666666554
No 17
>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]}
Probab=33.69 E-value=7.9 Score=35.61 Aligned_cols=21 Identities=24% Similarity=0.599 Sum_probs=17.7
Q ss_pred cccCCCCcceecccCCcceeee
Q 024294 13 LSVDPNVPRWVCQNCRHFLCIV 34 (269)
Q Consensus 13 ~~~~~~~~~~~Cq~C~~~l~i~ 34 (269)
....+.+|. .||.|+.|++++
T Consensus 386 ~~~~~~lp~-~C~~cq~P~~~~ 406 (491)
T d2inca1 386 LTVPETLPT-ICNMCNLPIAHT 406 (491)
T ss_dssp GGSCSSCBC-BCTTTCSBCBCC
T ss_pred cccCCCCCC-ccccCCCCcccC
Confidence 356688888 999999999986
No 18
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=32.89 E-value=70 Score=22.86 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (269)
Q Consensus 213 eel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL 247 (269)
++|..+++.|+.+...|.++|..+.....++..-+
T Consensus 4 ~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~ 38 (133)
T d1fxkc_ 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILE 38 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444444443333
No 19
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.64 E-value=76 Score=21.37 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 228 KLEAAIEETEKQNAEVNAELKELELKSKRF 257 (269)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~EL~~le~E~~~L 257 (269)
.|.+++..+..+.+.+..+...|..+..+|
T Consensus 56 ~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 56 SVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555554443
No 20
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.28 E-value=11 Score=25.36 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=15.8
Q ss_pred cCCCCcceecccCCcceee
Q 024294 15 VDPNVPRWVCQNCRHFLCI 33 (269)
Q Consensus 15 ~~~~~~~~~Cq~C~~~l~i 33 (269)
+||....|+|-.|+..|+=
T Consensus 33 ~d~~~~~F~C~~C~~el~e 51 (62)
T d1vd4a_ 33 FDPMTGTFRCTFCHTEVEE 51 (62)
T ss_dssp EETTTTEEBCSSSCCBCEE
T ss_pred cCcCCCeEEecCCCCEEec
Confidence 6888888888888888766
No 21
>d2fupa1 a.47.5.1 (A:1-130) Hypothetical protein PA3352 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=26.95 E-value=99 Score=21.81 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhcccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 187 DVTRDIEAYEACLQRLEGEARDV--LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (269)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~e~~~~--~seeel~~El~~Le~EE~~L~~eLeeLEkE~~~l~~EL 247 (269)
....|...|..++.=|+.+..-. -+. .++..+-.++..+...|..++..+.++-..+
T Consensus 10 ~L~~e~~~~~~L~~LL~~e~~aL~~~d~----~~Le~l~~~k~~ll~~l~~~~~~R~~~l~~~ 68 (130)
T d2fupa1 10 LFAEDIGHANQLLQLVDEEFQALERREL----PVLQQLLGAKQPLMQQLERNGRARAEILREA 68 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456778888888776653210 011 3566677777777888888777776665543
No 22
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.39 E-value=58 Score=30.91 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 024294 218 EKLKIEEEERKLEAAIEETEKQ--NAEVNAELKELELKSKRFKELEE 262 (269)
Q Consensus 218 El~~Le~EE~~L~~eLeeLEkE--~~~l~~EL~~le~E~~~Ld~eEe 262 (269)
+..+|++|-.++.++|+.|++. ..-...+|.+++++..++.+++.
T Consensus 710 ei~kL~~E~~~l~~Ei~~L~~~t~~~lW~~DL~~l~~~y~k~~~~~~ 756 (760)
T d1bjta_ 710 RYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDA 756 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666666666542 22235667777766666655443
No 23
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=26.02 E-value=1.9e+02 Score=24.70 Aligned_cols=16 Identities=13% Similarity=0.187 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHHHhcC
Q 024294 146 HSTITVLKRAFEIATS 161 (269)
Q Consensus 146 s~~i~~l~~lFdILS~ 161 (269)
..+|+.+.+.++.|.+
T Consensus 5 ~~~i~eL~~rl~~Lr~ 20 (362)
T d1gqea_ 5 NNRIQDLTERSDVLRG 20 (362)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555544
No 24
>d1rw2a_ a.118.19.1 (A:) C-terminal domain of Ku80 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.51 E-value=16 Score=28.40 Aligned_cols=47 Identities=11% Similarity=0.220 Sum_probs=35.5
Q ss_pred HHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024294 154 RAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (269)
Q Consensus 154 ~lFdILS~~s~IDhPLC~ECtd~Lle~Ld~ql~~~~~E~d~Y~~fL~~L~~e 205 (269)
.|+.++-+..+..|+-+.||...|.+..=. ..|-..|..||..|+..
T Consensus 61 vI~~lv~s~~~~~y~Ka~ecL~~lRe~ci~-----~~ep~~yN~FL~~LK~~ 107 (152)
T d1rw2a_ 61 HIEQFLDTNETPYFMKSIDCIRAFREEAIK-----FSEEQRFNNFLKALQEK 107 (152)
T ss_dssp HHHHHHHSSCSHHHHHHHHHHHHHHHHHHH-----HTCSHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHH
Confidence 467778556777899999999888776532 34567899999999753
No 25
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=24.97 E-value=97 Score=21.03 Aligned_cols=29 Identities=7% Similarity=0.216 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024294 227 RKLEAAIEETEKQNAEVNAELKELELKSK 255 (269)
Q Consensus 227 ~~L~~eLeeLEkE~~~l~~EL~~le~E~~ 255 (269)
..+...+..++.....+...+..+..+..
T Consensus 154 ~~l~~~~~~~~~~~~~~~~~~~~~~~ek~ 182 (185)
T d2ap3a1 154 KAIEQNYKKLKEVSDKYTKVLNKVQKEKQ 182 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444444444433
No 26
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=24.39 E-value=1.6e+02 Score=25.92 Aligned_cols=19 Identities=32% Similarity=0.162 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024294 227 RKLEAAIEETEKQNAEVNA 245 (269)
Q Consensus 227 ~~L~~eLeeLEkE~~~l~~ 245 (269)
.+|.+|+++++++.+++..
T Consensus 443 ~kL~~E~~~l~~ei~eL~~ 461 (493)
T d1ab4a_ 443 EKLLDEYKELLDQIAELLR 461 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 27
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]}
Probab=21.27 E-value=13 Score=34.41 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=16.6
Q ss_pred CCCCcceecccCCcceeeeccc
Q 024294 16 DPNVPRWVCQNCRHFLCIVGVD 37 (269)
Q Consensus 16 ~~~~~~~~Cq~C~~~l~i~g~d 37 (269)
...+|.+.||-|+.|+|++..+
T Consensus 396 ~~~~p~~~c~~cq~p~~~~~~~ 417 (512)
T d1mtyd_ 396 ENNHPIYIDRVSQVPFCPSLAK 417 (512)
T ss_dssp HTTCCCEECTTTCCEECTTTCS
T ss_pred cccCCcccccccCCCccccCCC
Confidence 4567778999999998865333
No 28
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.26 E-value=11 Score=22.97 Aligned_cols=13 Identities=23% Similarity=0.728 Sum_probs=9.8
Q ss_pred CCCCCcchHHHHH
Q 024294 163 TQVEQPLCLECMR 175 (269)
Q Consensus 163 s~IDhPLC~ECtd 175 (269)
...|||+|..|-|
T Consensus 22 ~~Fd~~vCD~CRD 34 (36)
T d1d4ua2 22 DHFDLPTCDDCRD 34 (36)
T ss_dssp TTTSCCCCTTTCS
T ss_pred HcCCchhcccccC
Confidence 3578899988854
No 29
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.10 E-value=17 Score=24.94 Aligned_cols=21 Identities=29% Similarity=0.713 Sum_probs=16.4
Q ss_pred cccCCCCcc--eecccCCcceee
Q 024294 13 LSVDPNVPR--WVCQNCRHFLCI 33 (269)
Q Consensus 13 ~~~~~~~~~--~~Cq~C~~~l~i 33 (269)
.+.||.+|+ +.|.+|.+.=.+
T Consensus 13 ~~~DPtlp~t~~~CpkCg~~~a~ 35 (72)
T d1twfi2 13 IGSDPTLPRSDRECPKCHSRENV 35 (72)
T ss_dssp GGGCTTSCCCCCCCTTTCCCCEE
T ss_pred cccCCCCCccCCCCCCCCCCeEE
Confidence 367888876 789999987655
Done!