Query 024295
Match_columns 269
No_of_seqs 122 out of 1819
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 03:31:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1062 AdhC Zn-dependent alco 100.0 4.4E-41 9.5E-46 271.5 23.1 263 1-269 101-366 (366)
2 KOG0022 Alcohol dehydrogenase, 100.0 2.4E-40 5.1E-45 263.3 23.0 265 2-269 108-375 (375)
3 COG1064 AdhP Zn-dependent alco 100.0 3.3E-40 7.2E-45 271.6 21.4 236 17-269 93-337 (339)
4 COG0604 Qor NADPH:quinone redu 100.0 1.7E-38 3.7E-43 267.0 21.7 247 14-269 70-326 (326)
5 KOG0024 Sorbitol dehydrogenase 100.0 1.1E-37 2.4E-42 249.7 22.6 254 7-268 67-351 (354)
6 cd08281 liver_ADH_like1 Zinc-d 100.0 4.3E-37 9.4E-42 265.1 26.2 226 37-267 144-370 (371)
7 TIGR03451 mycoS_dep_FDH mycoth 100.0 1.6E-36 3.5E-41 260.4 26.2 229 36-268 128-357 (358)
8 KOG1197 Predicted quinone oxid 100.0 7.6E-37 1.7E-41 236.4 17.5 247 13-268 76-329 (336)
9 PLN02740 Alcohol dehydrogenase 100.0 1E-35 2.2E-40 257.4 25.4 231 36-269 150-381 (381)
10 TIGR02818 adh_III_F_hyde S-(hy 100.0 1.3E-35 2.8E-40 255.6 25.6 230 37-269 138-368 (368)
11 cd08239 THR_DH_like L-threonin 100.0 1.3E-35 2.8E-40 253.2 25.1 244 14-269 67-339 (339)
12 PLN02827 Alcohol dehydrogenase 100.0 3.2E-35 6.9E-40 253.7 25.6 230 37-269 146-376 (378)
13 cd08300 alcohol_DH_class_III c 100.0 6.7E-35 1.4E-39 251.3 25.6 229 37-268 139-368 (368)
14 cd08277 liver_alcohol_DH_like 100.0 1.3E-34 2.8E-39 249.2 25.1 230 36-268 136-365 (365)
15 cd08301 alcohol_DH_plants Plan 100.0 2.2E-34 4.8E-39 248.3 25.9 229 37-268 140-369 (369)
16 PRK09880 L-idonate 5-dehydroge 100.0 2E-34 4.2E-39 246.2 24.9 220 36-269 123-343 (343)
17 PRK10309 galactitol-1-phosphat 100.0 1.6E-33 3.4E-38 241.1 25.3 247 14-269 66-346 (347)
18 PLN03154 putative allyl alcoho 100.0 3.3E-33 7.2E-38 238.7 21.6 245 13-269 86-345 (348)
19 KOG0023 Alcohol dehydrogenase, 100.0 4.7E-33 1E-37 222.7 20.7 218 37-269 135-354 (360)
20 TIGR03201 dearomat_had 6-hydro 100.0 2E-32 4.4E-37 234.3 24.5 226 36-269 113-349 (349)
21 cd08231 MDR_TM0436_like Hypoth 100.0 4.3E-32 9.4E-37 233.4 26.5 251 14-269 67-361 (361)
22 PLN02586 probable cinnamyl alc 100.0 3.3E-32 7.1E-37 233.6 24.8 238 14-269 79-353 (360)
23 cd08233 butanediol_DH_like (2R 100.0 4E-32 8.7E-37 232.7 25.3 243 15-268 78-351 (351)
24 PLN02178 cinnamyl-alcohol dehy 100.0 5.3E-32 1.2E-36 233.1 24.5 238 14-269 73-348 (375)
25 COG1063 Tdh Threonine dehydrog 100.0 6.1E-32 1.3E-36 230.2 24.0 247 16-269 88-350 (350)
26 TIGR02822 adh_fam_2 zinc-bindi 100.0 8.6E-32 1.9E-36 228.4 23.5 231 14-267 69-328 (329)
27 cd08295 double_bond_reductase_ 100.0 8E-32 1.7E-36 229.7 22.1 245 13-269 81-338 (338)
28 TIGR03366 HpnZ_proposed putati 100.0 5E-32 1.1E-36 225.0 19.5 205 36-250 72-280 (280)
29 TIGR02819 fdhA_non_GSH formald 100.0 3.9E-31 8.4E-36 228.9 24.7 248 13-269 73-390 (393)
30 cd05279 Zn_ADH1 Liver alcohol 100.0 6.8E-31 1.5E-35 226.1 25.0 227 36-268 135-365 (365)
31 cd08278 benzyl_alcohol_DH Benz 100.0 8E-31 1.7E-35 225.7 25.2 227 36-268 138-365 (365)
32 cd08291 ETR_like_1 2-enoyl thi 100.0 7.9E-31 1.7E-35 222.4 23.4 242 15-268 74-324 (324)
33 cd08230 glucose_DH Glucose deh 100.0 1.2E-30 2.7E-35 223.8 24.0 237 15-269 71-355 (355)
34 PLN02514 cinnamyl-alcohol dehy 100.0 1.5E-30 3.3E-35 223.2 24.0 237 15-269 77-350 (357)
35 cd08299 alcohol_DH_class_I_II_ 100.0 4.2E-30 9E-35 221.7 26.1 230 36-269 142-373 (373)
36 TIGR01202 bchC 2-desacetyl-2-h 100.0 8.1E-31 1.8E-35 220.5 20.5 226 16-268 73-308 (308)
37 cd08238 sorbose_phosphate_red 100.0 3.2E-30 7E-35 225.0 24.2 249 13-269 74-368 (410)
38 cd08285 NADP_ADH NADP(H)-depen 100.0 7.1E-30 1.5E-34 218.8 25.3 247 15-269 67-351 (351)
39 cd08237 ribitol-5-phosphate_DH 100.0 9.4E-31 2E-35 223.2 19.6 230 19-269 74-339 (341)
40 TIGR02825 B4_12hDH leukotriene 100.0 2.2E-30 4.7E-35 219.8 21.7 244 13-268 66-325 (325)
41 KOG1198 Zinc-binding oxidoredu 100.0 1.4E-30 3E-35 219.3 19.1 239 21-269 89-345 (347)
42 cd08292 ETR_like_2 2-enoyl thi 100.0 8.1E-30 1.7E-34 216.1 23.4 244 15-268 72-324 (324)
43 cd08279 Zn_ADH_class_III Class 100.0 2.6E-29 5.7E-34 216.2 26.2 228 36-267 134-362 (363)
44 cd08294 leukotriene_B4_DH_like 100.0 8.1E-30 1.7E-34 216.6 22.0 244 13-269 68-329 (329)
45 cd08286 FDH_like_ADH2 formalde 100.0 3.1E-29 6.6E-34 214.5 25.5 244 16-269 69-345 (345)
46 cd08293 PTGR2 Prostaglandin re 100.0 1.6E-29 3.4E-34 216.2 23.2 244 15-269 82-345 (345)
47 cd08263 Zn_ADH10 Alcohol dehyd 100.0 5.2E-29 1.1E-33 214.7 24.9 227 36-268 139-367 (367)
48 cd08296 CAD_like Cinnamyl alco 100.0 5.2E-29 1.1E-33 212.0 24.3 236 16-268 69-333 (333)
49 cd08246 crotonyl_coA_red croto 100.0 3.6E-29 7.8E-34 217.6 23.5 244 15-267 95-391 (393)
50 COG2130 Putative NADP-dependen 100.0 2.1E-29 4.6E-34 200.3 19.6 240 17-269 85-338 (340)
51 cd05284 arabinose_DH_like D-ar 100.0 7.1E-29 1.5E-33 211.7 24.3 241 14-269 70-340 (340)
52 cd08283 FDH_like_1 Glutathione 100.0 1.7E-28 3.8E-33 212.6 25.0 226 36-269 135-386 (386)
53 cd08261 Zn_ADH7 Alcohol dehydr 100.0 3.4E-28 7.3E-33 207.4 25.6 241 16-269 68-337 (337)
54 PRK10083 putative oxidoreducta 100.0 2.3E-28 5.1E-33 208.5 24.4 241 15-269 67-337 (339)
55 cd08240 6_hydroxyhexanoate_dh_ 100.0 2.8E-28 6.1E-33 208.9 24.3 243 15-269 80-350 (350)
56 cd08284 FDH_like_2 Glutathione 100.0 3.4E-28 7.3E-33 207.9 24.7 245 14-268 66-343 (344)
57 cd05278 FDH_like Formaldehyde 100.0 2.3E-28 4.9E-33 209.2 23.3 245 15-269 68-347 (347)
58 cd08262 Zn_ADH8 Alcohol dehydr 100.0 3.8E-28 8.3E-33 207.3 24.3 243 15-268 77-341 (341)
59 cd08244 MDR_enoyl_red Possible 100.0 3.9E-28 8.4E-33 205.7 23.8 244 16-269 74-324 (324)
60 cd08256 Zn_ADH2 Alcohol dehydr 100.0 5.8E-28 1.3E-32 206.9 24.9 240 16-267 77-350 (350)
61 cd08260 Zn_ADH6 Alcohol dehydr 100.0 5.7E-28 1.2E-32 206.6 24.7 244 16-268 69-344 (345)
62 cd05285 sorbitol_DH Sorbitol d 100.0 7.2E-28 1.6E-32 205.8 24.8 241 16-268 69-342 (343)
63 cd08265 Zn_ADH3 Alcohol dehydr 100.0 7.6E-28 1.6E-32 208.5 25.1 247 15-267 101-383 (384)
64 cd05282 ETR_like 2-enoyl thioe 100.0 4.4E-28 9.5E-33 205.3 22.7 245 15-268 70-323 (323)
65 cd08235 iditol_2_DH_like L-idi 100.0 1E-27 2.2E-32 204.8 25.0 243 16-268 68-343 (343)
66 cd08297 CAD3 Cinnamyl alcohol 100.0 9.2E-28 2E-32 205.0 24.6 243 14-269 69-341 (341)
67 TIGR01751 crot-CoA-red crotony 100.0 5.9E-28 1.3E-32 210.2 23.6 246 15-269 91-387 (398)
68 cd08269 Zn_ADH9 Alcohol dehydr 100.0 1.4E-27 3E-32 201.3 25.0 245 14-267 64-311 (312)
69 PTZ00354 alcohol dehydrogenase 100.0 6E-28 1.3E-32 205.3 22.9 246 15-269 72-328 (334)
70 cd08274 MDR9 Medium chain dehy 100.0 7.7E-28 1.7E-32 206.1 22.8 240 14-269 90-350 (350)
71 cd08287 FDH_like_ADH3 formalde 100.0 1.7E-27 3.8E-32 203.6 24.9 246 14-269 66-345 (345)
72 KOG0025 Zn2+-binding dehydroge 100.0 3.3E-28 7.1E-33 191.9 18.6 233 15-256 91-337 (354)
73 TIGR00692 tdh L-threonine 3-de 100.0 2.6E-27 5.5E-32 202.2 24.7 244 15-269 69-340 (340)
74 cd08254 hydroxyacyl_CoA_DH 6-h 100.0 3E-27 6.5E-32 201.4 24.3 240 16-269 71-338 (338)
75 PRK05396 tdh L-threonine 3-deh 100.0 3.5E-27 7.6E-32 201.4 24.6 244 14-269 70-340 (341)
76 cd08236 sugar_DH NAD(P)-depend 100.0 5.4E-27 1.2E-31 200.4 24.9 244 16-267 67-343 (343)
77 cd08290 ETR 2-enoyl thioester 100.0 1.9E-27 4E-32 203.1 21.6 246 14-269 76-341 (341)
78 PRK10754 quinone oxidoreductas 100.0 1.1E-27 2.4E-32 203.3 19.3 248 15-269 71-327 (327)
79 cd08232 idonate-5-DH L-idonate 100.0 1.1E-26 2.4E-31 198.1 24.3 239 15-269 67-339 (339)
80 cd08282 PFDH_like Pseudomonas 100.0 2E-26 4.3E-31 199.1 25.9 245 14-269 66-375 (375)
81 cd08234 threonine_DH_like L-th 100.0 1.5E-26 3.3E-31 196.9 24.2 240 15-267 66-333 (334)
82 TIGR02817 adh_fam_1 zinc-bindi 100.0 7.6E-27 1.7E-31 198.9 22.0 241 14-268 71-334 (336)
83 PRK09422 ethanol-active dehydr 100.0 1.8E-26 3.9E-31 196.8 24.1 240 15-269 67-336 (338)
84 cd08270 MDR4 Medium chain dehy 100.0 9.6E-27 2.1E-31 195.6 21.3 237 14-269 64-305 (305)
85 PLN02702 L-idonate 5-dehydroge 100.0 2.9E-26 6.3E-31 197.4 24.8 244 16-269 88-364 (364)
86 cd05283 CAD1 Cinnamyl alcohol 100.0 1.2E-26 2.6E-31 197.8 22.2 234 16-268 68-337 (337)
87 KOG1202 Animal-type fatty acid 100.0 7.2E-28 1.6E-32 218.0 14.4 236 27-269 1495-1741(2376)
88 cd05281 TDH Threonine dehydrog 100.0 4E-26 8.6E-31 194.9 24.3 242 16-269 72-341 (341)
89 cd05286 QOR2 Quinone oxidoredu 100.0 5.3E-26 1.1E-30 191.7 24.2 245 16-269 69-320 (320)
90 cd08276 MDR7 Medium chain dehy 100.0 5.5E-26 1.2E-30 193.4 24.0 244 15-269 71-336 (336)
91 cd08242 MDR_like Medium chain 99.9 5.3E-26 1.2E-30 192.4 22.3 211 36-269 109-319 (319)
92 cd08289 MDR_yhfp_like Yhfp put 99.9 4.4E-26 9.5E-31 193.4 21.4 240 19-269 73-326 (326)
93 cd05280 MDR_yhdh_yhfp Yhdh and 99.9 8.5E-26 1.8E-30 191.5 22.2 239 19-269 73-325 (325)
94 cd08243 quinone_oxidoreductase 99.9 9.7E-26 2.1E-30 190.5 21.3 234 21-267 74-319 (320)
95 cd08249 enoyl_reductase_like e 99.9 1.6E-25 3.4E-30 191.1 22.7 239 14-269 67-339 (339)
96 cd08250 Mgc45594_like Mgc45594 99.9 1.1E-25 2.3E-30 191.3 21.3 242 15-268 74-329 (329)
97 cd05276 p53_inducible_oxidored 99.9 2.1E-25 4.6E-30 188.2 22.9 243 16-267 72-323 (323)
98 TIGR02823 oxido_YhdH putative 99.9 3E-25 6.5E-30 188.1 23.2 238 19-269 72-323 (323)
99 cd08255 2-desacetyl-2-hydroxye 99.9 2E-25 4.4E-30 185.1 21.5 234 13-267 32-277 (277)
100 PRK13771 putative alcohol dehy 99.9 2.5E-25 5.5E-30 189.4 21.3 235 16-269 69-333 (334)
101 cd08266 Zn_ADH_like1 Alcohol d 99.9 9.7E-25 2.1E-29 185.9 23.4 242 16-269 72-342 (342)
102 cd08298 CAD2 Cinnamyl alcohol 99.9 1.1E-24 2.3E-29 185.2 23.1 229 15-267 72-329 (329)
103 cd08251 polyketide_synthase po 99.9 7.9E-25 1.7E-29 183.4 21.9 242 15-267 51-303 (303)
104 smart00829 PKS_ER Enoylreducta 99.9 4.6E-25 9.9E-30 183.2 20.3 242 15-267 37-288 (288)
105 cd08258 Zn_ADH4 Alcohol dehydr 99.9 5.3E-25 1.2E-29 185.2 20.7 208 15-233 69-306 (306)
106 TIGR02824 quinone_pig3 putativ 99.9 8E-25 1.7E-29 185.0 21.9 245 16-269 72-325 (325)
107 cd08252 AL_MDR Arginate lyase 99.9 1.2E-24 2.5E-29 185.4 22.9 242 16-268 74-336 (336)
108 cd08259 Zn_ADH5 Alcohol dehydr 99.9 1.4E-24 3.1E-29 184.5 23.2 235 16-268 69-332 (332)
109 cd05288 PGDH Prostaglandin deh 99.9 6.4E-25 1.4E-29 186.5 20.8 233 22-267 83-329 (329)
110 cd08253 zeta_crystallin Zeta-c 99.9 1.5E-24 3.3E-29 183.2 22.9 244 16-269 72-325 (325)
111 cd08245 CAD Cinnamyl alcohol d 99.9 1.9E-24 4.2E-29 183.7 22.7 234 16-267 68-330 (330)
112 cd05195 enoyl_red enoyl reduct 99.9 1.7E-24 3.6E-29 180.1 20.3 243 14-267 40-293 (293)
113 KOG1196 Predicted NAD-dependen 99.9 8.8E-25 1.9E-29 173.5 16.8 243 15-269 83-340 (343)
114 cd08241 QOR1 Quinone oxidoredu 99.9 6.1E-24 1.3E-28 179.4 22.7 244 16-268 72-323 (323)
115 cd08272 MDR6 Medium chain dehy 99.9 5.8E-24 1.3E-28 179.9 21.4 239 16-269 72-326 (326)
116 cd08268 MDR2 Medium chain dehy 99.9 1.1E-23 2.4E-28 178.3 22.2 245 16-269 72-328 (328)
117 cd08247 AST1_like AST1 is a cy 99.9 1.3E-23 2.9E-28 180.1 22.8 246 15-269 72-352 (352)
118 cd08288 MDR_yhdh Yhdh putative 99.9 1.2E-23 2.7E-28 178.2 22.1 239 18-269 72-324 (324)
119 cd08264 Zn_ADH_like2 Alcohol d 99.9 7.9E-24 1.7E-28 179.6 20.8 225 15-262 68-320 (325)
120 cd05188 MDR Medium chain reduc 99.9 1.1E-23 2.5E-28 173.6 20.1 205 15-229 43-270 (271)
121 cd08273 MDR8 Medium chain dehy 99.9 2.7E-23 5.9E-28 176.6 21.0 240 14-267 70-330 (331)
122 cd08271 MDR5 Medium chain dehy 99.9 2.2E-23 4.9E-28 176.4 20.2 240 16-269 71-325 (325)
123 cd08275 MDR3 Medium chain dehy 99.9 8.9E-23 1.9E-27 173.6 23.6 243 16-269 71-337 (337)
124 cd08248 RTN4I1 Human Reticulon 99.9 1.9E-23 4.2E-28 178.9 18.3 239 15-268 87-350 (350)
125 cd08267 MDR1 Medium chain dehy 99.9 5E-23 1.1E-27 173.8 20.6 239 14-267 71-319 (319)
126 cd05289 MDR_like_2 alcohol deh 99.9 1.2E-22 2.6E-27 170.6 19.2 231 16-267 74-309 (309)
127 PF00107 ADH_zinc_N: Zinc-bind 99.8 7.6E-20 1.6E-24 134.5 12.8 129 95-231 1-129 (130)
128 cd00401 AdoHcyase S-adenosyl-L 99.6 1.2E-13 2.6E-18 118.7 18.0 174 73-268 189-375 (413)
129 PRK09424 pntA NAD(P) transhydr 99.5 2.5E-13 5.4E-18 119.6 12.9 156 82-242 162-339 (509)
130 PF13602 ADH_zinc_N_2: Zinc-bi 99.4 1.5E-13 3.3E-18 100.4 4.1 120 128-267 1-127 (127)
131 PRK11873 arsM arsenite S-adeno 98.8 2.8E-08 6.1E-13 82.2 9.9 163 79-257 72-246 (272)
132 TIGR00561 pntA NAD(P) transhyd 98.7 2E-07 4.3E-12 82.5 12.1 108 83-192 162-288 (511)
133 PRK05476 S-adenosyl-L-homocyst 98.5 2.1E-06 4.5E-11 74.6 13.1 102 73-191 199-302 (425)
134 TIGR00936 ahcY adenosylhomocys 98.4 5.4E-06 1.2E-10 71.7 13.2 93 82-191 192-285 (406)
135 cd05213 NAD_bind_Glutamyl_tRNA 98.4 1.3E-06 2.8E-11 73.6 8.6 109 48-169 139-251 (311)
136 COG2518 Pcm Protein-L-isoaspar 98.4 2E-06 4.4E-11 66.8 8.8 122 53-187 43-168 (209)
137 PRK08306 dipicolinate synthase 98.4 1E-05 2.2E-10 67.7 13.2 95 84-192 151-245 (296)
138 PLN02494 adenosylhomocysteinas 98.3 1.4E-05 3E-10 69.9 12.4 102 73-191 241-344 (477)
139 PRK00517 prmA ribosomal protei 98.3 3.8E-05 8.2E-10 62.8 13.8 151 19-191 63-216 (250)
140 TIGR00518 alaDH alanine dehydr 98.1 3.3E-05 7.3E-10 66.6 11.2 99 84-192 166-271 (370)
141 PRK12771 putative glutamate sy 98.0 6.7E-06 1.4E-10 75.1 5.4 80 81-168 133-234 (564)
142 PTZ00075 Adenosylhomocysteinas 98.0 9E-05 1.9E-09 65.1 11.8 93 82-191 251-344 (476)
143 PRK00045 hemA glutamyl-tRNA re 98.0 1.7E-05 3.7E-10 69.7 7.1 90 68-169 162-255 (423)
144 TIGR02853 spore_dpaA dipicolin 98.0 0.00017 3.7E-09 60.0 11.8 110 68-191 130-243 (287)
145 PF01488 Shikimate_DH: Shikima 97.9 3.3E-05 7.2E-10 56.8 6.7 97 84-191 11-112 (135)
146 TIGR00406 prmA ribosomal prote 97.9 0.00015 3.3E-09 60.4 11.4 98 82-190 157-261 (288)
147 PRK08324 short chain dehydroge 97.9 0.00013 2.8E-09 68.3 11.7 115 37-165 385-507 (681)
148 PRK11705 cyclopropane fatty ac 97.8 0.00014 3.1E-09 63.0 10.0 109 68-188 151-267 (383)
149 PF01135 PCMT: Protein-L-isoas 97.8 3.9E-05 8.6E-10 60.6 5.8 114 63-187 53-171 (209)
150 COG2242 CobL Precorrin-6B meth 97.8 0.00028 6.1E-09 53.9 10.0 104 78-190 28-137 (187)
151 PRK00377 cbiT cobalt-precorrin 97.8 0.00043 9.4E-09 54.4 11.2 102 78-187 34-144 (198)
152 COG4122 Predicted O-methyltran 97.8 0.0004 8.6E-09 54.9 10.5 107 77-188 52-166 (219)
153 TIGR01035 hemA glutamyl-tRNA r 97.7 0.00011 2.4E-09 64.5 7.4 113 36-169 137-253 (417)
154 COG2230 Cfa Cyclopropane fatty 97.7 0.00014 3.1E-09 59.5 7.4 105 72-191 60-179 (283)
155 PRK13942 protein-L-isoaspartat 97.7 0.0002 4.3E-09 57.0 8.1 101 76-187 68-175 (212)
156 PRK13943 protein-L-isoaspartat 97.7 0.00066 1.4E-08 57.3 11.4 102 77-187 73-179 (322)
157 TIGR00438 rrmJ cell division p 97.7 0.0011 2.4E-08 51.7 11.5 101 79-188 27-146 (188)
158 PF12847 Methyltransf_18: Meth 97.7 0.00025 5.5E-09 50.0 7.2 93 84-186 1-109 (112)
159 COG2264 PrmA Ribosomal protein 97.6 0.00083 1.8E-08 55.6 10.8 151 23-191 109-266 (300)
160 COG0300 DltE Short-chain dehyd 97.6 0.0016 3.5E-08 53.1 12.2 80 83-166 4-94 (265)
161 PRK04148 hypothetical protein; 97.6 0.00062 1.4E-08 49.4 8.4 86 83-179 15-100 (134)
162 KOG1209 1-Acyl dihydroxyaceton 97.6 0.00095 2.1E-08 51.9 9.7 106 84-192 6-142 (289)
163 PRK13944 protein-L-isoaspartat 97.6 0.0008 1.7E-08 53.2 9.8 101 76-187 64-172 (205)
164 PF02353 CMAS: Mycolic acid cy 97.6 8.1E-05 1.8E-09 61.4 4.1 98 76-188 54-166 (273)
165 COG3967 DltE Short-chain dehyd 97.5 0.00056 1.2E-08 52.9 7.8 78 85-166 5-88 (245)
166 PF06325 PrmA: Ribosomal prote 97.5 0.0017 3.7E-08 54.0 11.3 134 39-192 120-263 (295)
167 PRK05786 fabG 3-ketoacyl-(acyl 97.5 0.0025 5.4E-08 51.3 11.8 104 84-191 4-138 (238)
168 TIGR00080 pimt protein-L-isoas 97.5 0.00064 1.4E-08 54.2 8.0 101 76-187 69-176 (215)
169 PF02826 2-Hacid_dh_C: D-isome 97.4 0.0011 2.5E-08 51.1 8.9 91 83-190 34-129 (178)
170 TIGR02469 CbiT precorrin-6Y C5 97.4 0.0035 7.7E-08 44.8 10.9 101 77-187 12-121 (124)
171 COG2227 UbiG 2-polyprenyl-3-me 97.4 0.0011 2.3E-08 52.7 8.5 96 83-188 58-161 (243)
172 PRK00107 gidB 16S rRNA methylt 97.4 0.0012 2.7E-08 51.2 8.7 99 80-188 41-145 (187)
173 PF11017 DUF2855: Protein of u 97.4 0.016 3.5E-07 48.4 15.6 97 84-191 135-234 (314)
174 PRK07402 precorrin-6B methylas 97.4 0.0057 1.2E-07 48.0 12.4 103 76-188 32-142 (196)
175 PRK14967 putative methyltransf 97.4 0.011 2.3E-07 47.4 14.0 98 78-188 30-159 (223)
176 COG1748 LYS9 Saccharopine dehy 97.4 0.0025 5.4E-08 54.8 10.7 96 86-191 2-102 (389)
177 COG4221 Short-chain alcohol de 97.4 0.0014 2.9E-08 52.3 8.4 80 84-166 5-91 (246)
178 PF01262 AlaDh_PNT_C: Alanine 97.3 0.00084 1.8E-08 51.3 6.8 102 85-190 20-141 (168)
179 COG0686 Ald Alanine dehydrogen 97.3 0.0017 3.6E-08 53.5 8.3 97 85-192 168-272 (371)
180 COG2226 UbiE Methylase involve 97.3 0.0042 9.1E-08 49.9 10.3 105 78-191 45-159 (238)
181 PF01596 Methyltransf_3: O-met 97.3 0.00067 1.4E-08 53.5 5.7 105 79-188 40-155 (205)
182 COG2519 GCD14 tRNA(1-methylade 97.2 0.0031 6.7E-08 50.6 9.0 105 76-189 86-196 (256)
183 PRK05993 short chain dehydroge 97.2 0.0033 7.1E-08 52.1 9.7 78 84-165 3-85 (277)
184 PF13460 NAD_binding_10: NADH( 97.2 0.0065 1.4E-07 46.8 10.6 94 88-191 1-100 (183)
185 PRK11207 tellurite resistance 97.2 0.0021 4.5E-08 50.5 7.8 99 78-188 24-134 (197)
186 PRK08177 short chain dehydroge 97.2 0.0033 7.1E-08 50.3 9.0 77 86-166 2-81 (225)
187 PLN02781 Probable caffeoyl-CoA 97.2 0.004 8.7E-08 50.3 9.5 105 77-186 61-176 (234)
188 PF00670 AdoHcyase_NAD: S-aden 97.2 0.0072 1.6E-07 45.4 10.0 102 82-203 20-122 (162)
189 PRK13940 glutamyl-tRNA reducta 97.1 0.0039 8.5E-08 54.6 9.8 98 83-192 179-277 (414)
190 PRK05693 short chain dehydroge 97.1 0.004 8.7E-08 51.4 9.5 78 86-166 2-82 (274)
191 PLN02589 caffeoyl-CoA O-methyl 97.1 0.0056 1.2E-07 49.7 9.7 104 78-186 73-188 (247)
192 PLN02476 O-methyltransferase 97.1 0.0074 1.6E-07 49.8 10.2 105 77-186 111-226 (278)
193 PRK00312 pcm protein-L-isoaspa 97.1 0.0036 7.9E-08 49.7 8.2 112 63-187 59-174 (212)
194 cd01080 NAD_bind_m-THF_DH_Cycl 97.1 0.0098 2.1E-07 45.3 10.1 98 62-191 21-119 (168)
195 PRK12742 oxidoreductase; Provi 97.0 0.017 3.8E-07 46.4 12.2 77 84-166 5-85 (237)
196 PRK03369 murD UDP-N-acetylmura 97.0 0.0049 1.1E-07 55.5 9.6 74 82-168 9-82 (488)
197 PRK06182 short chain dehydroge 97.0 0.0044 9.4E-08 51.2 8.7 80 84-166 2-84 (273)
198 PRK12549 shikimate 5-dehydroge 97.0 0.0082 1.8E-07 50.0 10.0 43 84-126 126-168 (284)
199 cd05311 NAD_bind_2_malic_enz N 97.0 0.023 5E-07 45.6 12.2 94 83-190 23-130 (226)
200 PRK07060 short chain dehydroge 97.0 0.0064 1.4E-07 49.1 9.1 77 84-166 8-87 (245)
201 PRK08017 oxidoreductase; Provi 96.9 0.0037 8.1E-08 50.9 7.5 77 86-166 3-84 (256)
202 PRK00811 spermidine synthase; 96.9 0.0058 1.3E-07 50.9 8.6 99 83-188 75-191 (283)
203 PRK01683 trans-aconitate 2-met 96.9 0.013 2.8E-07 48.0 10.6 99 78-188 25-130 (258)
204 PLN03209 translocon at the inn 96.9 0.016 3.5E-07 52.5 11.7 47 78-125 73-120 (576)
205 PRK06139 short chain dehydroge 96.9 0.0047 1E-07 52.6 8.2 80 84-166 6-94 (330)
206 COG0169 AroE Shikimate 5-dehyd 96.9 0.0044 9.5E-08 51.2 7.4 44 84-127 125-168 (283)
207 COG4106 Tam Trans-aconitate me 96.9 0.0088 1.9E-07 46.8 8.4 95 80-185 26-126 (257)
208 KOG1205 Predicted dehydrogenas 96.9 0.021 4.6E-07 47.0 11.2 106 84-192 11-153 (282)
209 PRK07326 short chain dehydroge 96.9 0.018 3.9E-07 46.2 10.9 80 84-166 5-92 (237)
210 TIGR02356 adenyl_thiF thiazole 96.9 0.01 2.2E-07 46.8 9.0 35 84-118 20-54 (202)
211 PRK14103 trans-aconitate 2-met 96.8 0.021 4.6E-07 46.7 11.2 97 77-187 22-125 (255)
212 PRK04266 fibrillarin; Provisio 96.8 0.026 5.6E-07 45.3 11.2 102 78-187 66-175 (226)
213 cd01075 NAD_bind_Leu_Phe_Val_D 96.8 0.033 7.2E-07 43.8 11.7 110 84-211 27-137 (200)
214 TIGR01318 gltD_gamma_fam gluta 96.8 0.0073 1.6E-07 54.1 8.9 77 84-167 140-237 (467)
215 PF08704 GCD14: tRNA methyltra 96.8 0.0057 1.2E-07 49.6 7.3 108 76-189 32-147 (247)
216 PRK07502 cyclohexadienyl dehyd 96.8 0.013 2.8E-07 49.4 9.8 91 86-189 7-101 (307)
217 PLN03075 nicotianamine synthas 96.8 0.013 2.8E-07 48.7 9.4 97 84-187 123-232 (296)
218 PRK04457 spermidine synthase; 96.8 0.02 4.3E-07 47.1 10.6 94 83-186 65-175 (262)
219 PRK00258 aroE shikimate 5-dehy 96.8 0.0093 2E-07 49.5 8.7 45 83-127 121-165 (278)
220 PRK06057 short chain dehydroge 96.8 0.0079 1.7E-07 49.1 8.2 80 84-166 6-89 (255)
221 PF03446 NAD_binding_2: NAD bi 96.8 0.027 5.9E-07 42.7 10.5 88 86-189 2-95 (163)
222 TIGR00477 tehB tellurite resis 96.7 0.0089 1.9E-07 46.9 7.9 100 76-188 22-133 (195)
223 TIGR01809 Shik-DH-AROM shikima 96.7 0.0067 1.4E-07 50.5 7.4 75 84-166 124-200 (282)
224 PRK08265 short chain dehydroge 96.7 0.042 9.1E-07 45.0 12.2 80 84-166 5-90 (261)
225 PRK07806 short chain dehydroge 96.7 0.035 7.7E-07 44.9 11.6 102 84-189 5-135 (248)
226 PTZ00098 phosphoethanolamine N 96.7 0.01 2.2E-07 48.8 8.4 105 76-189 44-157 (263)
227 PRK08287 cobalt-precorrin-6Y C 96.7 0.032 6.9E-07 43.3 10.8 98 77-187 24-130 (187)
228 PRK12809 putative oxidoreducta 96.7 0.013 2.7E-07 54.7 9.9 77 84-167 309-406 (639)
229 TIGR00138 gidB 16S rRNA methyl 96.7 0.0057 1.2E-07 47.3 6.4 94 84-187 42-141 (181)
230 PRK07109 short chain dehydroge 96.7 0.024 5.3E-07 48.4 10.8 80 84-166 7-95 (334)
231 PRK06949 short chain dehydroge 96.7 0.01 2.2E-07 48.4 8.3 81 83-166 7-96 (258)
232 PRK14175 bifunctional 5,10-met 96.7 0.027 6E-07 46.6 10.5 96 63-191 136-233 (286)
233 PRK08261 fabG 3-ketoacyl-(acyl 96.7 0.027 5.9E-07 50.1 11.5 79 84-166 209-294 (450)
234 PLN02366 spermidine synthase 96.7 0.031 6.6E-07 47.1 11.0 104 82-188 89-206 (308)
235 TIGR01470 cysG_Nterm siroheme 96.7 0.013 2.9E-07 46.2 8.4 92 84-188 8-100 (205)
236 PRK00536 speE spermidine synth 96.7 0.009 2E-07 48.8 7.6 99 84-190 72-173 (262)
237 TIGR02752 MenG_heptapren 2-hep 96.7 0.01 2.3E-07 47.7 8.0 102 77-189 38-152 (231)
238 PRK07825 short chain dehydroge 96.7 0.012 2.6E-07 48.5 8.5 79 85-166 5-88 (273)
239 PRK08217 fabG 3-ketoacyl-(acyl 96.7 0.013 2.9E-07 47.4 8.7 79 84-165 4-91 (253)
240 PLN02244 tocopherol O-methyltr 96.6 0.0083 1.8E-07 51.3 7.6 97 83-188 117-223 (340)
241 PRK00121 trmB tRNA (guanine-N( 96.6 0.041 8.9E-07 43.4 11.0 99 84-188 40-156 (202)
242 PRK06841 short chain dehydroge 96.6 0.012 2.6E-07 47.9 8.3 80 84-166 14-99 (255)
243 PRK08261 fabG 3-ketoacyl-(acyl 96.6 0.0066 1.4E-07 54.0 7.2 94 78-191 27-126 (450)
244 PRK08618 ornithine cyclodeamin 96.6 0.061 1.3E-06 45.7 12.7 102 83-199 125-232 (325)
245 PRK06953 short chain dehydroge 96.6 0.02 4.4E-07 45.6 9.3 77 86-166 2-80 (222)
246 cd01065 NAD_bind_Shikimate_DH 96.6 0.017 3.7E-07 43.2 8.3 75 83-167 17-92 (155)
247 PRK08339 short chain dehydroge 96.6 0.016 3.5E-07 47.6 8.8 80 84-166 7-95 (263)
248 PRK07831 short chain dehydroge 96.6 0.017 3.6E-07 47.3 8.8 82 82-166 14-107 (262)
249 PRK05447 1-deoxy-D-xylulose 5- 96.6 0.054 1.2E-06 46.7 11.9 100 86-188 2-121 (385)
250 PLN02780 ketoreductase/ oxidor 96.6 0.015 3.3E-07 49.3 8.7 81 84-166 52-142 (320)
251 PRK08317 hypothetical protein; 96.6 0.033 7.2E-07 44.7 10.4 102 76-188 11-124 (241)
252 PF13241 NAD_binding_7: Putati 96.5 0.0056 1.2E-07 42.6 4.9 89 84-191 6-94 (103)
253 PRK07340 ornithine cyclodeamin 96.5 0.021 4.6E-07 48.0 9.3 103 83-200 123-229 (304)
254 PRK05872 short chain dehydroge 96.5 0.017 3.6E-07 48.4 8.7 80 84-166 8-95 (296)
255 PRK06196 oxidoreductase; Provi 96.5 0.016 3.6E-07 48.9 8.7 80 84-166 25-109 (315)
256 PRK12829 short chain dehydroge 96.5 0.015 3.2E-07 47.5 8.3 81 83-166 9-96 (264)
257 PRK06200 2,3-dihydroxy-2,3-dih 96.5 0.016 3.4E-07 47.5 8.4 80 84-166 5-90 (263)
258 TIGR03325 BphB_TodD cis-2,3-di 96.5 0.016 3.4E-07 47.6 8.3 79 84-165 4-88 (262)
259 PRK07574 formate dehydrogenase 96.5 0.04 8.7E-07 47.8 11.0 90 84-189 191-285 (385)
260 TIGR02354 thiF_fam2 thiamine b 96.5 0.012 2.6E-07 46.3 7.2 35 84-118 20-54 (200)
261 PRK07231 fabG 3-ketoacyl-(acyl 96.5 0.014 2.9E-07 47.4 7.9 80 84-166 4-91 (251)
262 TIGR03215 ac_ald_DH_ac acetald 96.5 0.032 6.9E-07 46.3 9.9 88 87-188 3-94 (285)
263 PF03435 Saccharop_dh: Sacchar 96.5 0.021 4.6E-07 49.8 9.4 91 88-187 1-97 (386)
264 PRK15116 sulfur acceptor prote 96.5 0.039 8.5E-07 45.3 10.2 35 84-118 29-63 (268)
265 PLN00203 glutamyl-tRNA reducta 96.5 0.017 3.7E-07 52.1 8.8 98 84-192 265-373 (519)
266 PRK06500 short chain dehydroge 96.5 0.017 3.7E-07 46.8 8.3 80 84-166 5-90 (249)
267 PRK07904 short chain dehydroge 96.5 0.029 6.2E-07 45.8 9.6 82 82-166 5-97 (253)
268 PRK12548 shikimate 5-dehydroge 96.5 0.027 5.8E-07 47.1 9.4 36 84-119 125-160 (289)
269 COG0421 SpeE Spermidine syntha 96.5 0.031 6.7E-07 46.3 9.6 99 86-188 78-190 (282)
270 PRK05866 short chain dehydroge 96.5 0.016 3.4E-07 48.5 8.1 80 84-166 39-127 (293)
271 PRK12769 putative oxidoreducta 96.5 0.021 4.5E-07 53.4 9.6 76 84-166 326-422 (654)
272 PRK07814 short chain dehydroge 96.4 0.016 3.6E-07 47.5 8.0 79 84-166 9-97 (263)
273 PRK12828 short chain dehydroge 96.4 0.021 4.5E-07 45.8 8.5 80 84-166 6-92 (239)
274 cd00755 YgdL_like Family of ac 96.4 0.034 7.3E-07 44.7 9.3 35 84-118 10-44 (231)
275 PRK09072 short chain dehydroge 96.4 0.025 5.4E-07 46.3 8.9 80 84-166 4-90 (263)
276 COG2910 Putative NADH-flavin r 96.4 0.019 4.1E-07 43.8 7.3 93 87-191 2-107 (211)
277 PRK06180 short chain dehydroge 96.4 0.021 4.5E-07 47.3 8.4 80 84-166 3-88 (277)
278 PRK06505 enoyl-(acyl carrier p 96.4 0.022 4.8E-07 47.0 8.5 80 84-166 6-95 (271)
279 PRK06718 precorrin-2 dehydroge 96.4 0.016 3.4E-07 45.7 7.1 92 84-189 9-101 (202)
280 PRK11036 putative S-adenosyl-L 96.4 0.043 9.4E-07 44.9 10.0 93 83-187 43-148 (255)
281 cd05211 NAD_bind_Glu_Leu_Phe_V 96.4 0.084 1.8E-06 42.1 11.2 77 84-167 22-108 (217)
282 PRK05867 short chain dehydroge 96.4 0.021 4.7E-07 46.4 8.2 80 84-166 8-96 (253)
283 TIGR03840 TMPT_Se_Te thiopurin 96.3 0.059 1.3E-06 42.8 10.2 104 82-189 32-153 (213)
284 PLN02233 ubiquinone biosynthes 96.3 0.078 1.7E-06 43.6 11.3 103 78-191 67-185 (261)
285 TIGR00563 rsmB ribosomal RNA s 96.3 0.049 1.1E-06 48.2 10.7 102 78-188 232-368 (426)
286 PRK09291 short chain dehydroge 96.3 0.027 5.7E-07 45.9 8.5 73 85-165 2-82 (257)
287 CHL00194 ycf39 Ycf39; Provisio 96.3 0.026 5.6E-07 47.8 8.6 95 87-190 2-111 (317)
288 PRK01581 speE spermidine synth 96.3 0.1 2.2E-06 44.7 11.9 104 82-189 148-269 (374)
289 KOG4022 Dihydropteridine reduc 96.3 0.024 5.3E-07 42.3 7.1 99 86-191 4-132 (236)
290 PRK07677 short chain dehydroge 96.3 0.023 4.9E-07 46.2 7.9 79 85-166 1-88 (252)
291 TIGR01832 kduD 2-deoxy-D-gluco 96.3 0.039 8.5E-07 44.6 9.3 80 84-166 4-90 (248)
292 PRK05690 molybdopterin biosynt 96.3 0.033 7.2E-07 45.3 8.7 35 84-118 31-65 (245)
293 COG0373 HemA Glutamyl-tRNA red 96.3 0.043 9.3E-07 47.7 9.7 101 80-192 173-278 (414)
294 cd00757 ThiF_MoeB_HesA_family 96.3 0.055 1.2E-06 43.5 9.9 35 84-118 20-54 (228)
295 PRK08300 acetaldehyde dehydrog 96.3 0.052 1.1E-06 45.3 9.9 91 86-187 5-99 (302)
296 PF01408 GFO_IDH_MocA: Oxidore 96.3 0.1 2.3E-06 37.0 10.5 90 87-191 2-95 (120)
297 PRK07533 enoyl-(acyl carrier p 96.3 0.032 6.9E-07 45.7 8.7 80 84-166 9-98 (258)
298 PRK06849 hypothetical protein; 96.3 0.29 6.3E-06 42.7 15.2 95 84-179 3-99 (389)
299 PF00899 ThiF: ThiF family; I 96.3 0.019 4.1E-07 42.0 6.7 34 85-118 2-35 (135)
300 PRK08267 short chain dehydroge 96.3 0.029 6.2E-07 45.9 8.4 78 86-166 2-87 (260)
301 PRK12475 thiamine/molybdopteri 96.3 0.031 6.8E-07 47.7 8.8 36 84-119 23-58 (338)
302 PRK13394 3-hydroxybutyrate deh 96.3 0.038 8.3E-07 45.1 9.1 80 84-166 6-94 (262)
303 COG3288 PntA NAD/NADP transhyd 96.2 0.049 1.1E-06 45.0 9.3 130 82-213 161-308 (356)
304 PRK07478 short chain dehydroge 96.2 0.03 6.4E-07 45.6 8.4 80 84-166 5-93 (254)
305 COG1179 Dinucleotide-utilizing 96.2 0.04 8.6E-07 44.0 8.5 105 84-192 29-157 (263)
306 PLN03139 formate dehydrogenase 96.2 0.06 1.3E-06 46.7 10.4 90 84-189 198-292 (386)
307 PRK12939 short chain dehydroge 96.2 0.03 6.5E-07 45.3 8.3 79 84-166 6-94 (250)
308 cd01483 E1_enzyme_family Super 96.2 0.052 1.1E-06 40.1 8.8 32 87-118 1-32 (143)
309 PRK05884 short chain dehydroge 96.2 0.041 8.9E-07 44.0 8.9 74 87-165 2-78 (223)
310 PRK08762 molybdopterin biosynt 96.2 0.053 1.2E-06 47.1 10.1 35 84-118 134-168 (376)
311 TIGR02355 moeB molybdopterin s 96.2 0.036 7.8E-07 44.9 8.5 35 84-118 23-57 (240)
312 PRK07024 short chain dehydroge 96.2 0.03 6.6E-07 45.7 8.2 79 85-166 2-88 (257)
313 PRK08644 thiamine biosynthesis 96.2 0.038 8.3E-07 43.9 8.5 35 84-118 27-61 (212)
314 PRK11188 rrmJ 23S rRNA methylt 96.2 0.11 2.5E-06 41.1 11.1 98 82-187 49-164 (209)
315 PRK13243 glyoxylate reductase; 96.2 0.083 1.8E-06 45.1 11.0 88 84-189 149-241 (333)
316 PRK06128 oxidoreductase; Provi 96.2 0.071 1.5E-06 44.7 10.6 80 84-166 54-144 (300)
317 TIGR00507 aroE shikimate 5-deh 96.2 0.05 1.1E-06 45.0 9.4 70 83-166 115-188 (270)
318 PRK08328 hypothetical protein; 96.2 0.026 5.7E-07 45.5 7.5 35 84-118 26-60 (231)
319 PRK08862 short chain dehydroge 96.2 0.038 8.1E-07 44.4 8.5 79 84-165 4-92 (227)
320 PRK06198 short chain dehydroge 96.2 0.039 8.4E-07 45.0 8.7 81 84-166 5-94 (260)
321 PRK07062 short chain dehydroge 96.2 0.031 6.8E-07 45.8 8.1 80 84-166 7-97 (265)
322 PRK05653 fabG 3-ketoacyl-(acyl 96.2 0.045 9.7E-07 44.0 9.0 80 84-166 4-92 (246)
323 PRK10258 biotin biosynthesis p 96.1 0.3 6.4E-06 39.8 13.8 99 78-189 36-141 (251)
324 PF01209 Ubie_methyltran: ubiE 96.1 0.0033 7.1E-08 50.7 2.2 102 78-191 41-156 (233)
325 PRK08264 short chain dehydroge 96.1 0.043 9.3E-07 44.1 8.7 75 84-166 5-83 (238)
326 PF03807 F420_oxidored: NADP o 96.1 0.091 2E-06 35.7 9.1 76 87-177 1-81 (96)
327 PRK08703 short chain dehydroge 96.1 0.044 9.6E-07 44.1 8.7 41 84-125 5-46 (239)
328 PTZ00146 fibrillarin; Provisio 96.1 0.1 2.2E-06 43.4 10.6 101 78-187 126-236 (293)
329 PRK15469 ghrA bifunctional gly 96.1 0.049 1.1E-06 46.0 9.1 89 84-190 135-228 (312)
330 PRK07576 short chain dehydroge 96.1 0.041 8.8E-07 45.2 8.5 79 84-165 8-95 (264)
331 PLN02823 spermine synthase 96.1 0.061 1.3E-06 45.8 9.6 100 84-187 103-219 (336)
332 PRK08340 glucose-1-dehydrogena 96.1 0.043 9.3E-07 44.8 8.6 77 87-166 2-86 (259)
333 TIGR00452 methyltransferase, p 96.1 0.037 8E-07 46.7 8.2 99 76-187 113-224 (314)
334 PRK06125 short chain dehydroge 96.1 0.054 1.2E-06 44.2 9.1 77 84-166 6-91 (259)
335 PLN02490 MPBQ/MSBQ methyltrans 96.1 0.049 1.1E-06 46.4 8.9 99 83-189 112-216 (340)
336 PRK07454 short chain dehydroge 96.1 0.047 1E-06 44.0 8.6 80 84-166 5-93 (241)
337 PRK06483 dihydromonapterin red 96.1 0.058 1.2E-06 43.4 9.1 79 85-166 2-84 (236)
338 PRK07523 gluconate 5-dehydroge 96.1 0.048 1E-06 44.4 8.8 80 84-166 9-97 (255)
339 cd01078 NAD_bind_H4MPT_DH NADP 96.0 0.07 1.5E-06 41.7 9.3 75 84-167 27-108 (194)
340 PF00106 adh_short: short chai 96.0 0.033 7.1E-07 42.0 7.2 81 86-166 1-90 (167)
341 PRK07774 short chain dehydroge 96.0 0.047 1E-06 44.2 8.6 80 84-166 5-93 (250)
342 PRK08213 gluconate 5-dehydroge 96.0 0.045 9.8E-07 44.6 8.5 80 84-166 11-99 (259)
343 PRK07688 thiamine/molybdopteri 96.0 0.044 9.6E-07 46.8 8.5 35 84-118 23-57 (339)
344 PRK07063 short chain dehydroge 96.0 0.044 9.5E-07 44.8 8.3 80 84-166 6-96 (260)
345 PRK05717 oxidoreductase; Valid 96.0 0.046 1E-06 44.5 8.3 80 84-166 9-94 (255)
346 PF08241 Methyltransf_11: Meth 96.0 0.0082 1.8E-07 40.5 3.3 86 89-186 1-95 (95)
347 TIGR03206 benzo_BadH 2-hydroxy 96.0 0.047 1E-06 44.2 8.3 79 84-165 2-89 (250)
348 PF07021 MetW: Methionine bios 96.0 0.06 1.3E-06 41.6 8.2 72 81-162 10-81 (193)
349 PRK06181 short chain dehydroge 96.0 0.045 9.8E-07 44.7 8.3 78 86-166 2-88 (263)
350 cd01492 Aos1_SUMO Ubiquitin ac 96.0 0.059 1.3E-06 42.3 8.5 35 84-118 20-54 (197)
351 PF13659 Methyltransf_26: Meth 96.0 0.04 8.6E-07 39.0 7.0 96 85-187 1-114 (117)
352 PRK06194 hypothetical protein; 96.0 0.034 7.3E-07 46.2 7.5 80 84-166 5-93 (287)
353 PRK05875 short chain dehydroge 96.0 0.048 1.1E-06 44.9 8.5 79 84-165 6-95 (276)
354 PRK06172 short chain dehydroge 96.0 0.038 8.2E-07 44.9 7.7 80 84-166 6-94 (253)
355 PRK14192 bifunctional 5,10-met 96.0 0.12 2.5E-06 43.0 10.5 76 83-190 157-233 (283)
356 PRK06138 short chain dehydroge 96.0 0.049 1.1E-06 44.1 8.3 80 84-166 4-91 (252)
357 PRK12367 short chain dehydroge 96.0 0.062 1.3E-06 43.7 8.9 73 84-166 13-89 (245)
358 PRK07577 short chain dehydroge 95.9 0.042 9E-07 44.0 7.8 75 84-166 2-78 (234)
359 PRK07035 short chain dehydroge 95.9 0.049 1.1E-06 44.2 8.3 79 84-165 7-94 (252)
360 PRK05854 short chain dehydroge 95.9 0.056 1.2E-06 45.7 8.9 40 84-124 13-53 (313)
361 PRK06101 short chain dehydroge 95.9 0.055 1.2E-06 43.7 8.4 42 86-128 2-44 (240)
362 TIGR01505 tartro_sem_red 2-hyd 95.9 0.11 2.4E-06 43.4 10.4 70 87-171 1-70 (291)
363 PRK14903 16S rRNA methyltransf 95.9 0.15 3.3E-06 45.1 11.7 102 78-189 231-367 (431)
364 PRK08643 acetoin reductase; Va 95.9 0.052 1.1E-06 44.2 8.3 79 85-166 2-89 (256)
365 PRK06079 enoyl-(acyl carrier p 95.9 0.062 1.3E-06 43.8 8.8 79 84-165 6-92 (252)
366 PRK06179 short chain dehydroge 95.9 0.03 6.4E-07 46.1 6.9 77 85-166 4-83 (270)
367 PRK07890 short chain dehydroge 95.9 0.061 1.3E-06 43.7 8.7 80 84-166 4-92 (258)
368 PRK08277 D-mannonate oxidoredu 95.9 0.054 1.2E-06 44.7 8.5 79 84-165 9-96 (278)
369 PF02670 DXP_reductoisom: 1-de 95.9 0.13 2.9E-06 37.1 9.3 87 88-179 1-113 (129)
370 KOG1014 17 beta-hydroxysteroid 95.9 0.068 1.5E-06 44.3 8.6 78 84-166 48-136 (312)
371 PRK08219 short chain dehydroge 95.9 0.11 2.5E-06 41.2 10.1 75 86-166 4-81 (227)
372 PRK12481 2-deoxy-D-gluconate 3 95.9 0.078 1.7E-06 43.1 9.2 80 84-166 7-93 (251)
373 PF02254 TrkA_N: TrkA-N domain 95.9 0.14 3E-06 36.2 9.5 92 88-187 1-95 (116)
374 TIGR00417 speE spermidine synt 95.9 0.16 3.4E-06 42.1 11.0 101 84-188 72-186 (270)
375 PRK06719 precorrin-2 dehydroge 95.9 0.064 1.4E-06 40.4 7.9 81 84-179 12-92 (157)
376 PRK06484 short chain dehydroge 95.8 0.059 1.3E-06 48.9 9.2 104 84-191 268-403 (520)
377 PRK08690 enoyl-(acyl carrier p 95.8 0.059 1.3E-06 44.2 8.4 80 84-166 5-94 (261)
378 PRK08628 short chain dehydroge 95.8 0.053 1.1E-06 44.2 8.1 80 84-166 6-93 (258)
379 cd01487 E1_ThiF_like E1_ThiF_l 95.8 0.041 8.9E-07 42.3 6.9 33 87-119 1-33 (174)
380 PRK07417 arogenate dehydrogena 95.8 0.083 1.8E-06 43.9 9.2 87 87-188 2-91 (279)
381 PRK11579 putative oxidoreducta 95.8 0.18 4E-06 43.2 11.5 130 87-235 6-142 (346)
382 PRK06914 short chain dehydroge 95.8 0.063 1.4E-06 44.4 8.5 78 85-166 3-91 (280)
383 TIGR00446 nop2p NOL1/NOP2/sun 95.8 0.36 7.7E-06 39.8 12.7 101 79-188 66-199 (264)
384 PRK12335 tellurite resistance 95.8 0.028 6.1E-07 46.9 6.3 91 84-188 120-223 (287)
385 PRK12550 shikimate 5-dehydroge 95.8 0.05 1.1E-06 45.0 7.6 47 81-127 118-164 (272)
386 PRK07067 sorbitol dehydrogenas 95.8 0.079 1.7E-06 43.2 8.9 80 84-166 5-90 (257)
387 PRK06484 short chain dehydroge 95.8 0.045 9.7E-07 49.7 8.1 80 84-166 4-89 (520)
388 PRK06197 short chain dehydroge 95.8 0.067 1.5E-06 45.0 8.6 79 84-165 15-104 (306)
389 PRK06603 enoyl-(acyl carrier p 95.8 0.07 1.5E-06 43.7 8.5 79 84-165 7-95 (260)
390 PRK05876 short chain dehydroge 95.8 0.051 1.1E-06 45.0 7.7 80 84-166 5-93 (275)
391 PRK12384 sorbitol-6-phosphate 95.8 0.059 1.3E-06 43.9 8.1 39 85-124 2-41 (259)
392 PRK08415 enoyl-(acyl carrier p 95.8 0.074 1.6E-06 44.0 8.7 104 84-191 4-146 (274)
393 PRK06398 aldose dehydrogenase; 95.7 0.013 2.7E-07 48.0 4.1 76 84-166 5-82 (258)
394 PRK06114 short chain dehydroge 95.7 0.087 1.9E-06 42.9 9.0 80 84-166 7-96 (254)
395 PRK09242 tropinone reductase; 95.7 0.081 1.8E-06 43.1 8.8 80 84-166 8-98 (257)
396 PRK06482 short chain dehydroge 95.7 0.069 1.5E-06 44.0 8.5 78 86-166 3-86 (276)
397 PRK10538 malonic semialdehyde 95.7 0.058 1.3E-06 43.8 7.9 77 87-166 2-84 (248)
398 PRK14027 quinate/shikimate deh 95.7 0.045 9.8E-07 45.5 7.2 44 84-127 126-169 (283)
399 PRK14901 16S rRNA methyltransf 95.7 0.14 3E-06 45.5 10.7 103 79-188 247-384 (434)
400 PLN02336 phosphoethanolamine N 95.7 0.05 1.1E-06 48.9 8.0 102 78-188 260-369 (475)
401 PRK14904 16S rRNA methyltransf 95.7 0.17 3.6E-06 45.1 11.2 100 78-189 244-378 (445)
402 PF01113 DapB_N: Dihydrodipico 95.7 0.1 2.2E-06 37.6 8.2 93 87-192 2-101 (124)
403 PRK05562 precorrin-2 dehydroge 95.7 0.085 1.8E-06 42.1 8.3 92 84-188 24-116 (223)
404 PRK08263 short chain dehydroge 95.7 0.076 1.6E-06 43.8 8.6 79 85-166 3-87 (275)
405 PLN02928 oxidoreductase family 95.7 0.11 2.4E-06 44.6 9.7 97 84-190 158-264 (347)
406 PRK08085 gluconate 5-dehydroge 95.7 0.1 2.2E-06 42.4 9.2 80 84-166 8-96 (254)
407 TIGR00091 tRNA (guanine-N(7)-) 95.7 0.24 5.2E-06 38.7 10.9 98 84-189 16-133 (194)
408 PRK07453 protochlorophyllide o 95.7 0.066 1.4E-06 45.4 8.3 79 84-165 5-92 (322)
409 PRK09186 flagellin modificatio 95.7 0.085 1.8E-06 42.9 8.7 79 84-165 3-92 (256)
410 PRK15451 tRNA cmo(5)U34 methyl 95.7 0.039 8.4E-07 45.0 6.5 98 82-190 54-166 (247)
411 PRK12826 3-ketoacyl-(acyl-carr 95.7 0.054 1.2E-06 43.8 7.4 80 84-166 5-93 (251)
412 PRK08589 short chain dehydroge 95.7 0.068 1.5E-06 44.1 8.1 79 84-166 5-92 (272)
413 PRK08251 short chain dehydroge 95.6 0.095 2.1E-06 42.4 8.9 78 85-165 2-90 (248)
414 PRK13255 thiopurine S-methyltr 95.6 0.15 3.2E-06 40.7 9.6 101 81-187 34-154 (218)
415 PRK07066 3-hydroxybutyryl-CoA 95.6 0.31 6.7E-06 41.3 12.0 39 86-125 8-46 (321)
416 PRK07832 short chain dehydroge 95.6 0.12 2.5E-06 42.7 9.4 77 87-166 2-88 (272)
417 PRK14902 16S rRNA methyltransf 95.6 0.13 2.8E-06 45.8 10.3 103 78-188 244-379 (444)
418 KOG1610 Corticosteroid 11-beta 95.6 0.18 3.9E-06 42.0 10.1 109 83-192 27-168 (322)
419 PF02558 ApbA: Ketopantoate re 95.6 0.034 7.3E-07 41.5 5.7 97 88-190 1-103 (151)
420 PRK11559 garR tartronate semia 95.6 0.2 4.4E-06 41.9 11.0 70 87-171 4-73 (296)
421 PRK06940 short chain dehydroge 95.6 0.095 2.1E-06 43.3 8.9 78 85-166 2-86 (275)
422 KOG2017 Molybdopterin synthase 95.6 0.022 4.8E-07 47.6 4.9 33 84-116 65-97 (427)
423 PRK12823 benD 1,6-dihydroxycyc 95.6 0.065 1.4E-06 43.7 7.8 79 84-165 7-93 (260)
424 PRK08993 2-deoxy-D-gluconate 3 95.6 0.084 1.8E-06 43.0 8.4 80 84-166 9-95 (253)
425 PRK05597 molybdopterin biosynt 95.6 0.074 1.6E-06 45.8 8.3 35 84-118 27-61 (355)
426 PRK12429 3-hydroxybutyrate deh 95.6 0.096 2.1E-06 42.5 8.8 80 84-166 3-91 (258)
427 PRK06124 gluconate 5-dehydroge 95.6 0.095 2.1E-06 42.6 8.7 80 84-166 10-98 (256)
428 PF13847 Methyltransf_31: Meth 95.6 0.043 9.3E-07 41.0 6.1 96 83-189 2-111 (152)
429 PF08240 ADH_N: Alcohol dehydr 95.6 0.0091 2E-07 41.9 2.3 39 14-53 44-109 (109)
430 PRK14618 NAD(P)H-dependent gly 95.6 0.15 3.4E-06 43.3 10.2 95 86-189 5-105 (328)
431 PLN02396 hexaprenyldihydroxybe 95.6 0.073 1.6E-06 45.1 8.0 96 83-188 130-235 (322)
432 PRK01438 murD UDP-N-acetylmura 95.6 0.11 2.5E-06 46.6 9.8 70 84-167 15-89 (480)
433 PRK10901 16S rRNA methyltransf 95.6 0.2 4.3E-06 44.4 11.0 102 78-188 238-372 (427)
434 COG0569 TrkA K+ transport syst 95.5 0.12 2.7E-06 41.4 8.9 74 87-167 2-77 (225)
435 PRK07984 enoyl-(acyl carrier p 95.5 0.11 2.4E-06 42.7 8.9 79 84-165 5-93 (262)
436 PRK13403 ketol-acid reductoiso 95.5 0.25 5.3E-06 41.7 10.8 86 84-187 15-104 (335)
437 PRK08278 short chain dehydroge 95.5 0.068 1.5E-06 44.1 7.7 36 84-120 5-41 (273)
438 PRK07856 short chain dehydroge 95.5 0.079 1.7E-06 43.0 8.0 78 84-166 5-85 (252)
439 PF01564 Spermine_synth: Sperm 95.5 0.082 1.8E-06 43.0 7.9 96 84-188 76-191 (246)
440 PRK06141 ornithine cyclodeamin 95.5 0.28 6.1E-06 41.5 11.4 102 83-199 123-230 (314)
441 PLN02253 xanthoxin dehydrogena 95.5 0.078 1.7E-06 43.8 8.0 80 84-166 17-104 (280)
442 PRK07074 short chain dehydroge 95.5 0.096 2.1E-06 42.6 8.4 79 85-166 2-87 (257)
443 PRK07666 fabG 3-ketoacyl-(acyl 95.5 0.11 2.4E-06 41.8 8.6 80 84-166 6-94 (239)
444 PRK05708 2-dehydropantoate 2-r 95.5 0.097 2.1E-06 44.1 8.5 95 87-188 4-104 (305)
445 PRK10669 putative cation:proto 95.5 0.12 2.6E-06 47.5 9.7 75 86-167 418-492 (558)
446 PRK03612 spermidine synthase; 95.5 0.18 4E-06 45.8 10.7 102 83-188 296-415 (521)
447 PRK06935 2-deoxy-D-gluconate 3 95.5 0.075 1.6E-06 43.3 7.7 79 84-166 14-101 (258)
448 PF01210 NAD_Gly3P_dh_N: NAD-d 95.5 0.084 1.8E-06 39.8 7.3 85 87-179 1-91 (157)
449 PRK08159 enoyl-(acyl carrier p 95.4 0.12 2.5E-06 42.8 8.8 80 83-165 8-97 (272)
450 PRK14194 bifunctional 5,10-met 95.4 0.25 5.4E-06 41.3 10.5 95 63-190 137-233 (301)
451 PRK06463 fabG 3-ketoacyl-(acyl 95.4 0.11 2.3E-06 42.3 8.5 80 84-166 6-89 (255)
452 PRK00216 ubiE ubiquinone/menaq 95.4 0.23 5E-06 39.9 10.3 104 79-190 46-160 (239)
453 PRK03562 glutathione-regulated 95.4 0.12 2.6E-06 48.0 9.6 77 85-169 400-477 (621)
454 PRK14968 putative methyltransf 95.4 0.069 1.5E-06 41.2 7.0 43 82-127 21-63 (188)
455 PRK06997 enoyl-(acyl carrier p 95.4 0.1 2.2E-06 42.8 8.2 80 84-166 5-94 (260)
456 PRK08594 enoyl-(acyl carrier p 95.4 0.12 2.7E-06 42.2 8.7 79 84-165 6-96 (257)
457 PRK06720 hypothetical protein; 95.4 0.17 3.7E-06 38.6 8.9 39 84-123 15-54 (169)
458 PRK07102 short chain dehydroge 95.4 0.12 2.7E-06 41.6 8.7 38 86-124 2-40 (243)
459 PRK15068 tRNA mo(5)U34 methylt 95.4 0.096 2.1E-06 44.5 8.2 99 79-187 117-225 (322)
460 PRK08226 short chain dehydroge 95.4 0.15 3.4E-06 41.6 9.3 80 84-166 5-92 (263)
461 COG0673 MviM Predicted dehydro 95.4 0.29 6.3E-06 41.7 11.3 133 87-235 5-145 (342)
462 cd01484 E1-2_like Ubiquitin ac 95.4 0.09 1.9E-06 42.4 7.5 32 87-118 1-32 (234)
463 PRK14189 bifunctional 5,10-met 95.4 0.23 4.9E-06 41.2 10.0 95 64-191 137-233 (285)
464 PRK12480 D-lactate dehydrogena 95.3 0.25 5.5E-06 42.1 10.6 87 84-190 145-236 (330)
465 TIGR02622 CDP_4_6_dhtase CDP-g 95.3 0.1 2.2E-06 44.8 8.3 76 84-166 3-85 (349)
466 PRK07411 hypothetical protein; 95.3 0.069 1.5E-06 46.6 7.3 35 84-118 37-71 (390)
467 PRK08223 hypothetical protein; 95.3 0.1 2.2E-06 43.2 7.9 35 84-118 26-60 (287)
468 PF10727 Rossmann-like: Rossma 95.3 0.086 1.9E-06 38.1 6.6 78 86-179 11-90 (127)
469 PF10294 Methyltransf_16: Puta 95.3 0.045 9.7E-07 42.0 5.5 110 65-184 21-152 (173)
470 PRK12749 quinate/shikimate deh 95.3 0.079 1.7E-06 44.2 7.3 37 84-120 123-159 (288)
471 PF08003 Methyltransf_9: Prote 95.3 0.15 3.1E-06 42.5 8.6 92 84-186 115-217 (315)
472 PRK12936 3-ketoacyl-(acyl-carr 95.3 0.12 2.6E-06 41.6 8.2 80 84-166 5-90 (245)
473 PF00070 Pyr_redox: Pyridine n 95.3 0.063 1.4E-06 35.3 5.5 32 87-119 1-32 (80)
474 PRK06436 glycerate dehydrogena 95.3 0.18 3.8E-06 42.5 9.3 35 84-119 121-155 (303)
475 PF05368 NmrA: NmrA-like famil 95.3 0.14 2.9E-06 41.2 8.5 70 88-165 1-73 (233)
476 PRK03659 glutathione-regulated 95.3 0.17 3.8E-06 46.8 10.1 92 86-186 401-496 (601)
477 PRK06077 fabG 3-ketoacyl-(acyl 95.3 0.34 7.3E-06 39.2 10.9 104 84-191 5-143 (252)
478 PLN00016 RNA-binding protein; 95.3 0.26 5.7E-06 42.8 10.8 96 85-189 52-165 (378)
479 PRK07985 oxidoreductase; Provi 95.3 0.4 8.6E-06 40.1 11.5 80 84-166 48-138 (294)
480 PRK12747 short chain dehydroge 95.2 0.38 8.3E-06 39.0 11.2 38 84-122 3-42 (252)
481 PLN00141 Tic62-NAD(P)-related 95.2 0.13 2.8E-06 41.9 8.4 100 84-190 16-133 (251)
482 PRK07097 gluconate 5-dehydroge 95.2 0.11 2.4E-06 42.6 8.0 80 84-166 9-97 (265)
483 cd01485 E1-1_like Ubiquitin ac 95.2 0.21 4.6E-06 39.2 9.1 35 84-118 18-52 (198)
484 KOG1252 Cystathionine beta-syn 95.2 0.24 5.2E-06 41.5 9.6 59 78-137 96-158 (362)
485 TIGR01963 PHB_DH 3-hydroxybuty 95.2 0.12 2.6E-06 41.9 8.1 78 86-166 2-88 (255)
486 PRK07791 short chain dehydroge 95.2 0.21 4.7E-06 41.5 9.7 36 83-119 4-40 (286)
487 PRK06113 7-alpha-hydroxysteroi 95.2 0.13 2.8E-06 41.9 8.3 80 84-166 10-98 (255)
488 PRK14106 murD UDP-N-acetylmura 95.2 0.12 2.5E-06 46.1 8.6 70 84-166 4-78 (450)
489 TIGR00872 gnd_rel 6-phosphoglu 95.2 0.62 1.4E-05 39.1 12.5 43 87-130 2-44 (298)
490 PRK09260 3-hydroxybutyryl-CoA 95.2 0.3 6.6E-06 40.7 10.6 40 86-126 2-41 (288)
491 PRK05650 short chain dehydroge 95.2 0.13 2.9E-06 42.2 8.3 77 87-166 2-87 (270)
492 PRK10206 putative oxidoreducta 95.2 0.18 3.8E-06 43.3 9.3 132 87-235 3-142 (344)
493 COG2084 MmsB 3-hydroxyisobutyr 95.2 0.38 8.2E-06 39.9 10.7 73 87-174 2-75 (286)
494 PRK05600 thiamine biosynthesis 95.2 0.16 3.4E-06 44.0 8.9 35 84-118 40-74 (370)
495 KOG3010 Methyltransferase [Gen 95.2 0.055 1.2E-06 43.2 5.5 102 78-187 26-135 (261)
496 PRK08293 3-hydroxybutyryl-CoA 95.1 0.36 7.7E-06 40.3 10.8 40 86-126 4-43 (287)
497 TIGR01532 E4PD_g-proteo D-eryt 95.1 0.19 4E-06 42.7 9.1 100 87-191 1-123 (325)
498 KOG1201 Hydroxysteroid 17-beta 95.1 0.11 2.5E-06 42.8 7.5 78 84-166 37-124 (300)
499 COG0031 CysK Cysteine synthase 95.1 0.48 1E-05 39.5 11.1 60 77-137 54-116 (300)
500 TIGR02632 RhaD_aldol-ADH rhamn 95.1 0.13 2.8E-06 48.4 8.8 80 84-166 413-503 (676)
No 1
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=100.00 E-value=4.4e-41 Score=271.46 Aligned_cols=263 Identities=40% Similarity=0.713 Sum_probs=242.8
Q ss_pred CCCCCCCCcccc-cccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHh
Q 024295 1 MTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKE 79 (269)
Q Consensus 1 ~~~~c~~~~~~~-~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~ 79 (269)
++++|....-+- .|..-+|..++.-+|..++.+...++|+||.++++..+++++++.+++.++++.|...|.+.+..+.
T Consensus 101 k~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nt 180 (366)
T COG1062 101 KPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNT 180 (366)
T ss_pred CcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCCCCccceEEEeeeeccChHHhhhc
Confidence 367787666555 6777788888876688888888888999999999999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCc-cHHHHHHhhhCCCCcc
Q 024295 80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNK-SISELVKGITHGMGVD 158 (269)
Q Consensus 80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~-~~~~~i~~~~~~~~~d 158 (269)
+++++|++|.|.|.|++|++++|-|+..|+++++++|.+++|+++++++|+++++|.++ . +..+.+++++++ ++|
T Consensus 181 a~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~---~~~vv~~i~~~T~g-G~d 256 (366)
T COG1062 181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKE---VDDVVEAIVELTDG-GAD 256 (366)
T ss_pred ccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchh---hhhHHHHHHHhcCC-CCC
Confidence 99999999999999999999999999999999999999999999999999999999987 5 699999999998 999
Q ss_pred EEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCC
Q 024295 159 YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237 (269)
Q Consensus 159 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 237 (269)
++|||+|+...++.++.++.++ |+.+.+|.... ...++++..+. .+++++|++++....+.+++.+++++.+|++.+
T Consensus 257 ~~~e~~G~~~~~~~al~~~~~~-G~~v~iGv~~~~~~i~~~~~~lv-~gr~~~Gs~~G~~~p~~diP~lv~~y~~Gkl~~ 334 (366)
T COG1062 257 YAFECVGNVEVMRQALEATHRG-GTSVIIGVAGAGQEISTRPFQLV-TGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPL 334 (366)
T ss_pred EEEEccCCHHHHHHHHHHHhcC-CeEEEEecCCCCceeecChHHee-ccceEEEEeecCCccccchhHHHHHHHcCCCch
Confidence 9999999999999999999995 99999998875 56667777777 559999999999988999999999999999999
Q ss_pred CcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295 238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269 (269)
Q Consensus 238 ~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~ 269 (269)
++++++.++|++++|||+.|.+++.+|.||+|
T Consensus 335 d~lvt~~~~Le~INeaf~~m~~G~~IR~Vi~~ 366 (366)
T COG1062 335 DRLVTHTIPLEDINEAFDLMHEGKSIRSVIRF 366 (366)
T ss_pred hHHhhccccHHHHHHHHHHHhCCceeeEEecC
Confidence 99999999999999999999999999999875
No 2
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.4e-40 Score=263.28 Aligned_cols=265 Identities=46% Similarity=0.789 Sum_probs=244.5
Q ss_pred CCCCCCCcccc--cccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHh
Q 024295 2 TNLCLKYPIAL--NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKE 79 (269)
Q Consensus 2 ~~~c~~~~~~~--~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~ 79 (269)
.|+|.+..... ....-++.++|.-.|+.++.+..-.+|+||.+++...++++++..+++.++++.|..+|+|.|..+.
T Consensus 108 tNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~ 187 (375)
T KOG0022|consen 108 TNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNT 187 (375)
T ss_pred CChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecCCCCChhheeEeeccccccchhhhhh
Confidence 47888888766 3334488889876699999887778999999999999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295 80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 159 (269)
Q Consensus 80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~ 159 (269)
+.+++|+++.|.|.|++|+++++-+|+.|+++++++|.+++|.+.++++|+++++|+.+ ......+.+++.|++ |+|+
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d-~~~~i~evi~EmTdg-GvDy 265 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKD-LKKPIQEVIIEMTDG-GVDY 265 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhh-ccccHHHHHHHHhcC-CceE
Confidence 99999999999999999999999999999999999999999999999999999999874 224688889999998 9999
Q ss_pred EEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCC
Q 024295 160 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLH 238 (269)
Q Consensus 160 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 238 (269)
.|||+|+...+++++.+.+.|+|+-+.+|.... ...+++++.++ +++++.|+.++.++.+.+++.+.+.+.++++.++
T Consensus 266 sfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~-~GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l~ld 344 (375)
T KOG0022|consen 266 SFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLV-TGRTWKGSAFGGFKSKSDIPKLVKDYMKKKLNLD 344 (375)
T ss_pred EEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhc-cccEEEEEecccccchhhhhHHHHHHHhCccchh
Confidence 999999999999999999998899999998876 77888888888 8999999999999999999999999999999999
Q ss_pred cceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295 239 QLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269 (269)
Q Consensus 239 ~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~ 269 (269)
.+++|.+|++++++||+.|.+++.+|.||.+
T Consensus 345 ~~ITh~l~f~~In~AF~ll~~GksiR~vl~~ 375 (375)
T KOG0022|consen 345 EFITHELPFEEINKAFDLLHEGKSIRCVLWM 375 (375)
T ss_pred hhhhcccCHHHHHHHHHHHhCCceEEEEEeC
Confidence 9999999999999999999999999999875
No 3
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=100.00 E-value=3.3e-40 Score=271.60 Aligned_cols=236 Identities=27% Similarity=0.391 Sum_probs=208.4
Q ss_pred cCCceeeeecCeEE-------eeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEE
Q 024295 17 LDSTSRMSVRGQKL-------YHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVA 89 (269)
Q Consensus 17 g~~~~~~~~~Gd~v-------~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vl 89 (269)
+|+.|.+|..|... .+++.+|+||||+++++++++++|++++++.||.+.|+..|+|++|. ..+++||++|+
T Consensus 93 ~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~alk-~~~~~pG~~V~ 171 (339)
T COG1064 93 SCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALK-KANVKPGKWVA 171 (339)
T ss_pred CCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeehh-hcCCCCCCEEE
Confidence 46666666666442 35666799999999999999999999999999999999999999975 59999999999
Q ss_pred EEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH
Q 024295 90 VLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL 169 (269)
Q Consensus 90 I~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~ 169 (269)
|+|.|++|.+++|+|+.+|+ +|++++++++|++.++++|++++++.++ ++..+.+++ .+|+++|+++ +..
T Consensus 172 I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~i~~~~---~~~~~~~~~-----~~d~ii~tv~-~~~ 241 (339)
T COG1064 172 VVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVINSSD---SDALEAVKE-----IADAIIDTVG-PAT 241 (339)
T ss_pred EECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEEEEcCC---chhhHHhHh-----hCcEEEECCC-hhh
Confidence 99999999999999999998 9999999999999999999999999776 777777765 3999999999 779
Q ss_pred HHHHHHHcccCCcEEEEEccCC-CccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehh
Q 024295 170 LSEALETTKVGKGKVIVIGVGV-DAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLE 248 (269)
Q Consensus 170 ~~~~~~~l~~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 248 (269)
++.+++.++++ |+++++|.+. ....+++.+.++.+++++.|+..++ +.++++++++..+|++++. +.+.++++
T Consensus 242 ~~~~l~~l~~~-G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~---~~d~~e~l~f~~~g~Ikp~--i~e~~~l~ 315 (339)
T COG1064 242 LEPSLKALRRG-GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT---RADLEEALDFAAEGKIKPE--ILETIPLD 315 (339)
T ss_pred HHHHHHHHhcC-CEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCC---HHHHHHHHHHHHhCCceee--EEeeECHH
Confidence 99999999996 9999999984 3445677888888999999998876 4789999999999997765 54689999
Q ss_pred hHHHHHHHhcCCCe-eeEEeeC
Q 024295 249 EIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 249 ~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++++||+.|++++. +|+||++
T Consensus 316 ~in~A~~~m~~g~v~gR~Vi~~ 337 (339)
T COG1064 316 EINEAYERMEKGKVRGRAVIDM 337 (339)
T ss_pred HHHHHHHHHHcCCeeeEEEecC
Confidence 99999999999887 6999875
No 4
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=100.00 E-value=1.7e-38 Score=267.01 Aligned_cols=247 Identities=26% Similarity=0.366 Sum_probs=210.7
Q ss_pred ccccCCceeeeecCeEEeeee---ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEE
Q 024295 14 GLMLDSTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAV 90 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI 90 (269)
-.+|+++..+++ ||+|+... .+|+||||+.+|++.++++|+++++++||++++.++|||+++....+++++++|||
T Consensus 70 ~avG~~V~~~~~-GdrV~~~~~~~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV 148 (326)
T COG0604 70 VAVGSGVTGFKV-GDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLV 148 (326)
T ss_pred EEeCCCCCCcCC-CCEEEEccCCCCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 346899999988 99999886 67999999999999999999999999999999999999999999999999999999
Q ss_pred Ec-CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH
Q 024295 91 LG-LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL 169 (269)
Q Consensus 91 ~G-~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~ 169 (269)
+| +|++|.+++|+||.+|+ .++++..++++.+.++++|+++++++++ .++.+.+++++++.++|+|||++|+. .
T Consensus 149 ~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~---~~~~~~v~~~t~g~gvDvv~D~vG~~-~ 223 (326)
T COG0604 149 HGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYRE---EDFVEQVRELTGGKGVDVVLDTVGGD-T 223 (326)
T ss_pred ecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCc---ccHHHHHHHHcCCCCceEEEECCCHH-H
Confidence 98 59999999999999998 6777766778888999999999999988 88999999999998999999999987 7
Q ss_pred HHHHHHHcccCCcEEEEEccCC-CccccchhHhhhhCCceEEeeeccCC---CCCCcHHHHHHHHHCCCCCCCcceeEEe
Q 024295 170 LSEALETTKVGKGKVIVIGVGV-DAMVPLNVIALACGGRTLKGTTFGGI---KTKSDLPTLLDKCKNKEFKLHQLLTHHV 245 (269)
Q Consensus 170 ~~~~~~~l~~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 245 (269)
+..+++.++++ |+++.+|... ....+++...++.+.+...+...... ...+.+.++++++.+|++++ .++.+|
T Consensus 224 ~~~~l~~l~~~-G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~--~i~~~~ 300 (326)
T COG0604 224 FAASLAALAPG-GRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLKP--VIDRVY 300 (326)
T ss_pred HHHHHHHhccC-CEEEEEecCCCCCccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHHHHHcCCCcc--eeccEe
Confidence 78899999996 9999999887 35555666777778888888765533 11245777999999999654 477899
Q ss_pred ehhhHHHHHH--HhcCCCeeeEEeeC
Q 024295 246 KLEEIDKAIQ--LLKQPDCVKVLITI 269 (269)
Q Consensus 246 ~~~~~~~a~~--~~~~~~~~k~vl~~ 269 (269)
|+++..++.. .+.....+|+||++
T Consensus 301 ~l~e~~~a~a~~~~~~~~~GKvvl~~ 326 (326)
T COG0604 301 PLAEAPAAAAHLLLERRTTGKVVLKV 326 (326)
T ss_pred chhhhHHHHHHHHcccCCcceEEEeC
Confidence 9999655554 44412347999975
No 5
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-37 Score=249.67 Aligned_cols=254 Identities=25% Similarity=0.400 Sum_probs=217.3
Q ss_pred CCcccccccccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCC
Q 024295 7 KYPIALNGLMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSID 58 (269)
Q Consensus 7 ~~~~~~~~~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~ 58 (269)
|....++-++|+++..+++ ||||..-. .+|++++|++.++++++|+|+++|
T Consensus 67 HEssGiV~evG~~Vk~LkV-GDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs 145 (354)
T KOG0024|consen 67 HESSGIVEEVGDEVKHLKV-GDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVS 145 (354)
T ss_pred cccccchhhhccccccccc-CCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCc
Confidence 3344446778999999999 99985110 139999999999999999999999
Q ss_pred cccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCC
Q 024295 59 PSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDD 138 (269)
Q Consensus 59 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~ 138 (269)
++++|++. ++++++||. +++.+++|++|||+|+|++|+.+...||.+|+++|+.++..++|++.++++|++.+.+...
T Consensus 146 ~eeGAl~e-PLsV~~HAc-r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~ 223 (354)
T KOG0024|consen 146 FEEGALIE-PLSVGVHAC-RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSH 223 (354)
T ss_pred hhhccccc-chhhhhhhh-hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccc
Confidence 99999997 899999995 7899999999999999999999999999999999999999999999999999998776654
Q ss_pred CC-CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC
Q 024295 139 EP-NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI 217 (269)
Q Consensus 139 ~~-~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (269)
.. ++.+.+.+.+..++..+|+.|||+|....++.++..++.+ |++++.|... ...+|+......|++.+.|+. .
T Consensus 224 ~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~g-Gt~vlvg~g~-~~~~fpi~~v~~kE~~~~g~f---r 298 (354)
T KOG0024|consen 224 KSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSG-GTVVLVGMGA-EEIQFPIIDVALKEVDLRGSF---R 298 (354)
T ss_pred cccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccC-CEEEEeccCC-CccccChhhhhhheeeeeeee---e
Confidence 11 3445555555555456999999999988999999999996 9999998766 577888888888999999985 1
Q ss_pred CCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCC--eeeEEee
Q 024295 218 KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD--CVKVLIT 268 (269)
Q Consensus 218 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~k~vl~ 268 (269)
+...+++.+++++.+|++++++++++.|++++..+||+.+..++ .+|+++.
T Consensus 299 y~~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~ 351 (354)
T KOG0024|consen 299 YCNGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIIT 351 (354)
T ss_pred eccccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEEe
Confidence 22358999999999999999999999999999999999887765 4699886
No 6
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=100.00 E-value=4.3e-37 Score=265.14 Aligned_cols=226 Identities=35% Similarity=0.547 Sum_probs=202.0
Q ss_pred CcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295 37 STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID 116 (269)
Q Consensus 37 g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~ 116 (269)
|+|+||+.++++.++++|+++++++++++++++++||+++...++++++++|||+|+|++|++++|+||..|+++|++++
T Consensus 144 G~~aey~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~ 223 (371)
T cd08281 144 SAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVD 223 (371)
T ss_pred ccceeeEEecccceEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 68999999999999999999999999999999999999988888999999999999999999999999999996799999
Q ss_pred CCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccc
Q 024295 117 KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMV 195 (269)
Q Consensus 117 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~ 195 (269)
++++|++.++++|+++++++.+ .++.+.+++.+++ ++|++|||+|.+..+..++++++++ |+++.+|.... ...
T Consensus 224 ~~~~r~~~a~~~Ga~~~i~~~~---~~~~~~i~~~~~~-g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~ 298 (371)
T cd08281 224 LNEDKLALARELGATATVNAGD---PNAVEQVRELTGG-GVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEARL 298 (371)
T ss_pred CCHHHHHHHHHcCCceEeCCCc---hhHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHHHhcC-CEEEEEccCCCCcee
Confidence 9999999999999999999876 7888889888877 8999999999877889999999996 99999997643 345
Q ss_pred cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEe
Q 024295 196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267 (269)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl 267 (269)
+++...++.+++++.+++...+..++++.++++++.+|+++++++++++|+++++++||+.+.+++..|.||
T Consensus 299 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi 370 (371)
T cd08281 299 SVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVI 370 (371)
T ss_pred eecHHHHhhcCCEEEEEecCCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeee
Confidence 677777888999999988765444567899999999999998888999999999999999999887764443
No 7
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=100.00 E-value=1.6e-36 Score=260.43 Aligned_cols=229 Identities=29% Similarity=0.540 Sum_probs=203.6
Q ss_pred cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295 36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI 115 (269)
Q Consensus 36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~ 115 (269)
.|+|+||+.+++.+++++|+++++++++++++.+++||+++...+.++++++|||+|+|++|++++|+|+..|+++|+++
T Consensus 128 ~G~~aey~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~ 207 (358)
T TIGR03451 128 IGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAV 207 (358)
T ss_pred cccccceEEEehhheEECCCCCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 48999999999999999999999999999999999999988888899999999999999999999999999999669999
Q ss_pred cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-cc
Q 024295 116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AM 194 (269)
Q Consensus 116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~ 194 (269)
++++++++.++++|+++++++.+ .++.+.+++.+++.++|++||++|++..+..++++++++ |+++.+|.... ..
T Consensus 208 ~~~~~~~~~~~~~Ga~~~i~~~~---~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~-G~iv~~G~~~~~~~ 283 (358)
T TIGR03451 208 DIDDRKLEWAREFGATHTVNSSG---TDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLA-GTVVLVGVPTPDMT 283 (358)
T ss_pred cCCHHHHHHHHHcCCceEEcCCC---cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCce
Confidence 99999999999999999999876 788888888888778999999999877889999999996 99999997653 23
Q ss_pred ccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295 195 VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268 (269)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~ 268 (269)
.+++...++.++.++.+++.+....++.+.++++++.+|+++++++++++||++++++||+.+++++..|+++.
T Consensus 284 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~ 357 (358)
T TIGR03451 284 LELPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVLRSVVE 357 (358)
T ss_pred eeccHHHHhhcCCEEEEeecCCCCcHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcceeEEe
Confidence 55666677779999998865543345678999999999999888889999999999999999988877788875
No 8
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=7.6e-37 Score=236.42 Aligned_cols=247 Identities=22% Similarity=0.261 Sum_probs=216.4
Q ss_pred cccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295 13 NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG 92 (269)
Q Consensus 13 ~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G 92 (269)
+-.+|+|++++.+ ||+|.-++..|.|||+..+|...++++|+.+++++||++...++|||..+.+...+++|++||++.
T Consensus 76 VvAvG~gvtdrkv-GDrVayl~~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvha 154 (336)
T KOG1197|consen 76 VVAVGEGVTDRKV-GDRVAYLNPFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHA 154 (336)
T ss_pred EEEecCCcccccc-ccEEEEeccchhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 3456999999999 999988888899999999999999999999999999999999999999999999999999999996
Q ss_pred -CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295 93 -LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS 171 (269)
Q Consensus 93 -~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~ 171 (269)
+|++|+++.|+++..|+ .++++..+.+|++.+++.|+.|.++++. +|+.+++.+++++.|+|+++|.+|.. .+.
T Consensus 155 AAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~h~I~y~~---eD~v~~V~kiTngKGVd~vyDsvG~d-t~~ 229 (336)
T KOG1197|consen 155 AAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAEHPIDYST---EDYVDEVKKITNGKGVDAVYDSVGKD-TFA 229 (336)
T ss_pred ccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCcceeeccc---hhHHHHHHhccCCCCceeeeccccch-hhH
Confidence 59999999999999999 9999999999999999999999999998 99999999999888999999999987 889
Q ss_pred HHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC-CC----cHHHHHHHHHCCCCCCCcceeEEee
Q 024295 172 EALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT-KS----DLPTLLDKCKNKEFKLHQLLTHHVK 246 (269)
Q Consensus 172 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~l~~~g~~~~~~~~~~~~~ 246 (269)
..+.+|++. |++|.+|..++...+++...+..+++++..-.+-.|.. +. ...+++.++.+|.++++ |.|+||
T Consensus 230 ~sl~~Lk~~-G~mVSfG~asgl~~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~--I~~~yp 306 (336)
T KOG1197|consen 230 KSLAALKPM-GKMVSFGNASGLIDPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLKIH--IDHVYP 306 (336)
T ss_pred HHHHHhccC-ceEEEeccccCCCCCeehhhcChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhcCcccee--eeeecc
Confidence 999999995 99999998887555555556666666665433333322 22 24468888899997766 999999
Q ss_pred hhhHHHHHHHhcCCCe-eeEEee
Q 024295 247 LEEIDKAIQLLKQPDC-VKVLIT 268 (269)
Q Consensus 247 ~~~~~~a~~~~~~~~~-~k~vl~ 268 (269)
++++.+|++++++++. +|+++-
T Consensus 307 ls~vadA~~diesrktvGkvlLl 329 (336)
T KOG1197|consen 307 LSKVADAHADIESRKTVGKVLLL 329 (336)
T ss_pred hHHHHHHHHHHHhhhccceEEEe
Confidence 9999999999999887 698874
No 9
>PLN02740 Alcohol dehydrogenase-like
Probab=100.00 E-value=1e-35 Score=257.37 Aligned_cols=231 Identities=45% Similarity=0.812 Sum_probs=199.4
Q ss_pred cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295 36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI 115 (269)
Q Consensus 36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~ 115 (269)
+|+|+||++++.+.++++|+++++++++++++++.|||+++...++++++++|||+|+|++|++++|+|+.+|+++|+++
T Consensus 150 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~ 229 (381)
T PLN02740 150 TSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGV 229 (381)
T ss_pred CccceeEEEEehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEE
Confidence 48999999999999999999999999999999999999988888999999999999999999999999999999679999
Q ss_pred cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-cc
Q 024295 116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AM 194 (269)
Q Consensus 116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~ 194 (269)
++++++.+.++++|+++++++.+ ...++.+.+++.+++ ++|++||++|.+..+..+++++++++|+++.+|.... ..
T Consensus 230 ~~~~~r~~~a~~~Ga~~~i~~~~-~~~~~~~~v~~~~~~-g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~ 307 (381)
T PLN02740 230 DINPEKFEKGKEMGITDFINPKD-SDKPVHERIREMTGG-GVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKM 307 (381)
T ss_pred cCChHHHHHHHHcCCcEEEeccc-ccchHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCce
Confidence 99999999999999999998764 112477888888877 8999999999877889999999882299999997653 22
Q ss_pred ccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295 195 VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269 (269)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~ 269 (269)
.+++...++ +++++.|+..+.+....++.++++++.++++++.++++++|+++++++||+.+.+++.+|++|+.
T Consensus 308 ~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~~k~~~~~ 381 (381)
T PLN02740 308 LPLHPMELF-DGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKALRCLLHL 381 (381)
T ss_pred ecccHHHHh-cCCeEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCceeEEEeC
Confidence 344444344 78999998776554445789999999999998888899999999999999999888778999864
No 10
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=100.00 E-value=1.3e-35 Score=255.56 Aligned_cols=230 Identities=40% Similarity=0.710 Sum_probs=195.9
Q ss_pred CcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295 37 STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID 116 (269)
Q Consensus 37 g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~ 116 (269)
|+|+||+++|++.++++|+++++++++++++++.+||+++...++++++++|||+|+|++|++++|+||.+|+++|++++
T Consensus 138 G~~aey~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~ 217 (368)
T TIGR02818 138 STFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAID 217 (368)
T ss_pred ccceeeEEechhheEECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 68999999999999999999999999999999999999988888999999999999999999999999999997799999
Q ss_pred CCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccc
Q 024295 117 KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMV 195 (269)
Q Consensus 117 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~ 195 (269)
+++++++.++++|+++++++.+ .+.++.+.+++++++ ++|++||++|++..+..+++++++++|+++.+|.... ...
T Consensus 218 ~~~~~~~~a~~~Ga~~~i~~~~-~~~~~~~~v~~~~~~-g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~ 295 (368)
T TIGR02818 218 INPAKFELAKKLGATDCVNPND-YDKPIQEVIVEITDG-GVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEI 295 (368)
T ss_pred CCHHHHHHHHHhCCCeEEcccc-cchhHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcc
Confidence 9999999999999999998763 114566778888877 8999999999877889999999872399999997642 234
Q ss_pred cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295 196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269 (269)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~ 269 (269)
+++...+. ++..+.++..+....+.++.++++++.+++++++++++++||++++++||+.+.+++.+|++|+|
T Consensus 296 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~k~~v~~ 368 (368)
T TIGR02818 296 STRPFQLV-TGRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKSIRTVIHY 368 (368)
T ss_pred cccHHHHh-ccceEEEeeccCCCcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCceeEEeeC
Confidence 44444444 45567777654433345789999999999998888999999999999999999887778999975
No 11
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=100.00 E-value=1.3e-35 Score=253.19 Aligned_cols=244 Identities=27% Similarity=0.432 Sum_probs=210.7
Q ss_pred ccccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCCccccccc
Q 024295 14 GLMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFL 65 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~ 65 (269)
-.+|+++..+.+ ||+|+... .+|+|+||+.++++.++++|+++++++++++
T Consensus 67 ~~vG~~v~~~~~-Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l 145 (339)
T cd08239 67 VAVGPGVTHFRV-GDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALL 145 (339)
T ss_pred EEECCCCccCCC-CCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhh
Confidence 345788888998 99997532 2589999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHH
Q 024295 66 SCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS 145 (269)
Q Consensus 66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~ 145 (269)
++++.|||+++ ....++++++|||+|+|++|++++|+++.+|+++|+++++++++.+.++++|+++++++++ .+ .
T Consensus 146 ~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~---~~-~ 220 (339)
T cd08239 146 LCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQ---DD-V 220 (339)
T ss_pred cchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCc---ch-H
Confidence 99999999997 5678899999999999999999999999999955999999999999999999999999876 55 6
Q ss_pred HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchh-HhhhhCCceEEeeeccCCCCCCcHH
Q 024295 146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNV-IALACGGRTLKGTTFGGIKTKSDLP 224 (269)
Q Consensus 146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (269)
+.+++.+++.++|++||++|++..+..++++++++ |+++.+|..... +++. ..++.+++++.+++... .+++.
T Consensus 221 ~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~i~g~~~~~---~~~~~ 294 (339)
T cd08239 221 QEIRELTSGAGADVAIECSGNTAARRLALEAVRPW-GRLVLVGEGGEL--TIEVSNDLIRKQRTLIGSWYFS---VPDME 294 (339)
T ss_pred HHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcCCCCc--ccCcHHHHHhCCCEEEEEecCC---HHHHH
Confidence 77777777778999999999887778899999996 999999975532 2332 34667999999987543 36799
Q ss_pred HHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295 225 TLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269 (269)
Q Consensus 225 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~ 269 (269)
++++++.+|++++.++++++|+++++++||+.+.++..+|+||+|
T Consensus 295 ~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~gKvvi~~ 339 (339)
T cd08239 295 ECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVFVF 339 (339)
T ss_pred HHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCCceEEEEeC
Confidence 999999999998888999999999999999999887778999976
No 12
>PLN02827 Alcohol dehydrogenase-like
Probab=100.00 E-value=3.2e-35 Score=253.73 Aligned_cols=230 Identities=45% Similarity=0.808 Sum_probs=198.1
Q ss_pred CcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295 37 STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID 116 (269)
Q Consensus 37 g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~ 116 (269)
|+|+||+.+++..++++|+++++++++++.+.+.++++++...++++++++|||+|+|++|++++|+++.+|++.|++++
T Consensus 146 G~~aeyv~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~ 225 (378)
T PLN02827 146 SSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVD 225 (378)
T ss_pred ccceeeEEechhheEECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 79999999999999999999999999999889999998877778899999999999999999999999999996788999
Q ss_pred CCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCcccc
Q 024295 117 KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVP 196 (269)
Q Consensus 117 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~ 196 (269)
+++++.+.++++|+++++++++ ...++.+.+++.+++ ++|++||++|.+..+..+++.+++++|+++.+|.+.. ..+
T Consensus 226 ~~~~~~~~a~~lGa~~~i~~~~-~~~~~~~~v~~~~~~-g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~-~~~ 302 (378)
T PLN02827 226 INPEKAEKAKTFGVTDFINPND-LSEPIQQVIKRMTGG-GADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKA-KPE 302 (378)
T ss_pred CCHHHHHHHHHcCCcEEEcccc-cchHHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCC-Ccc
Confidence 8999999999999999998764 113677788888877 8999999999876789999999992299999997653 233
Q ss_pred chh-HhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295 197 LNV-IALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269 (269)
Q Consensus 197 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~ 269 (269)
++. ..++.+++++.|+....+....++.++++++.+|+++++++++++|+++++.+||+.+.+++..|+||.+
T Consensus 303 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~~k~vi~~ 376 (378)
T PLN02827 303 VSAHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKCLRCVIHM 376 (378)
T ss_pred ccccHHHHhcCceEEeeecCCCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCceEEEEEe
Confidence 333 3466699999998766554446788999999999998877899999999999999999988878999875
No 13
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=100.00 E-value=6.7e-35 Score=251.29 Aligned_cols=229 Identities=41% Similarity=0.732 Sum_probs=196.1
Q ss_pred CcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295 37 STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID 116 (269)
Q Consensus 37 g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~ 116 (269)
|+|+||+.++++.++++|+++++++++++++++.+||+++...++++++++|||+|+|++|++++|+|+.+|+++|++++
T Consensus 139 G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~ 218 (368)
T cd08300 139 STFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGID 218 (368)
T ss_pred ccceeEEEEchhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 68999999999999999999999999999999999999988888999999999999999999999999999997799999
Q ss_pred CCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccc
Q 024295 117 KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMV 195 (269)
Q Consensus 117 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~ 195 (269)
+++++.+.++++|+++++++.+ .++++.+.+++++++ ++|++||++|++..+..+++++++++|+++.+|.... ...
T Consensus 219 ~~~~~~~~~~~lGa~~~i~~~~-~~~~~~~~v~~~~~~-g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~ 296 (368)
T cd08300 219 INPDKFELAKKFGATDCVNPKD-HDKPIQQVLVEMTDG-GVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEI 296 (368)
T ss_pred CCHHHHHHHHHcCCCEEEcccc-cchHHHHHHHHHhCC-CCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCcc
Confidence 9999999999999999998865 112578888888877 9999999999877889999999873399999997642 233
Q ss_pred cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295 196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268 (269)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~ 268 (269)
+++...+. ++..+.++..+.+..++++.++++++.++++++.++++++|+++++++||+.+.+++..|++++
T Consensus 297 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~~k~~~~ 368 (368)
T cd08300 297 STRPFQLV-TGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKSIRTVVK 368 (368)
T ss_pred ccCHHHHh-hcCeEEEEEecccCcHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCCceeeeC
Confidence 33444444 4557777766555555778999999999999888889999999999999999988877899875
No 14
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=100.00 E-value=1.3e-34 Score=249.23 Aligned_cols=230 Identities=52% Similarity=0.897 Sum_probs=198.4
Q ss_pred cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295 36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI 115 (269)
Q Consensus 36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~ 115 (269)
.|+|+||++++++.++++|++++++++++++++++|||+++...++++++++|||+|+|++|++++|+|+..|+++|+++
T Consensus 136 ~g~~ae~~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~ 215 (365)
T cd08277 136 TSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGV 215 (365)
T ss_pred cccceeeEEEchhheEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 47899999999999999999999999999999999999998888899999999999999999999999999999779999
Q ss_pred cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccc
Q 024295 116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMV 195 (269)
Q Consensus 116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~ 195 (269)
++++++++.++++|++++++..+ .+.++.+.+++.+++ ++|++||++|.+..+..+++++++++|+++.+|...+...
T Consensus 216 ~~~~~~~~~~~~~ga~~~i~~~~-~~~~~~~~~~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~ 293 (365)
T cd08277 216 DINEDKFEKAKEFGATDFINPKD-SDKPVSEVIREMTGG-GVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAEL 293 (365)
T ss_pred eCCHHHHHHHHHcCCCcEecccc-ccchHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCcccc
Confidence 99999999999999999998764 112356778877774 8999999999877889999999872399999997653334
Q ss_pred cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295 196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268 (269)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~ 268 (269)
+++...++ +++++.++..+.+..+.+++++++++.+++++++++++++|+++++++||+.+.+++.+|++++
T Consensus 294 ~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~i~ 365 (365)
T cd08277 294 SIRPFQLI-LGRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGECIRTVIT 365 (365)
T ss_pred ccCHhHHh-hCCEEEeeecCCCChHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCCCceEeeC
Confidence 55665666 4889999887765545678999999999999888899999999999999999988877899874
No 15
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=100.00 E-value=2.2e-34 Score=248.25 Aligned_cols=229 Identities=45% Similarity=0.822 Sum_probs=198.6
Q ss_pred CcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295 37 STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID 116 (269)
Q Consensus 37 g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~ 116 (269)
|+|+||+++++.+++++|+++++++++++++.+.+||+++....+++++++|||+|+|++|++++|+|+.+|+++|++++
T Consensus 140 G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~ 219 (369)
T cd08301 140 STFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVD 219 (369)
T ss_pred ccceeEEEEecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 78999999999999999999999999999999999999988888999999999999999999999999999987799999
Q ss_pred CCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccc
Q 024295 117 KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMV 195 (269)
Q Consensus 117 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~ 195 (269)
+++++.+.++++|++.++++.+ ....+.+.+++.+++ ++|++||++|.+..+..+++++++++|+++.+|.... ...
T Consensus 220 ~~~~~~~~~~~~Ga~~~i~~~~-~~~~~~~~v~~~~~~-~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~ 297 (369)
T cd08301 220 LNPSKFEQAKKFGVTEFVNPKD-HDKPVQEVIAEMTGG-GVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVF 297 (369)
T ss_pred CCHHHHHHHHHcCCceEEcccc-cchhHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCccc
Confidence 9999999999999998888763 113466778887776 8999999999877788999999992299999997653 344
Q ss_pred cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295 196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268 (269)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~ 268 (269)
+++...++ +++++.|+....+..+++++++++++.+++++++++++++||++++++||+.+.+++.+|++|.
T Consensus 298 ~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~ 369 (369)
T cd08301 298 STHPMNLL-NGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECLRCILH 369 (369)
T ss_pred ccCHHHHh-cCCeEEEEecCCCChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCceeEEeC
Confidence 55554454 7899999887666555678999999999999888889999999999999999999888899874
No 16
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=100.00 E-value=2e-34 Score=246.18 Aligned_cols=220 Identities=22% Similarity=0.334 Sum_probs=187.8
Q ss_pred cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295 36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI 115 (269)
Q Consensus 36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~ 115 (269)
+|+|+||++++++.++++|++++++++++ ..++++||+++. .....++++|||+|+|++|++++|+++.+|+++|+++
T Consensus 123 ~G~~aey~~v~~~~~~~~P~~l~~~~aa~-~~~~~~a~~al~-~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~ 200 (343)
T PRK09880 123 DGGFTRYKVVDTAQCIPYPEKADEKVMAF-AEPLAVAIHAAH-QAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCA 200 (343)
T ss_pred CCceeeeEEechHHeEECCCCCCHHHHHh-hcHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence 59999999999999999999999877664 458889999875 4566689999999999999999999999999779999
Q ss_pred cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccc
Q 024295 116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMV 195 (269)
Q Consensus 116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~ 195 (269)
++++++++.++++|+++++++++ +++.+.. +. .+ ++|++||++|.+..+..++++++++ |+++.+|... ...
T Consensus 201 ~~~~~~~~~a~~lGa~~vi~~~~---~~~~~~~-~~-~g-~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~ 272 (343)
T PRK09880 201 DVSPRSLSLAREMGADKLVNPQN---DDLDHYK-AE-KG-YFDVSFEVSGHPSSINTCLEVTRAK-GVMVQVGMGG-APP 272 (343)
T ss_pred eCCHHHHHHHHHcCCcEEecCCc---ccHHHHh-cc-CC-CCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCC-CCC
Confidence 99999999999999999999876 5554322 22 23 6999999999877889999999996 9999999755 345
Q ss_pred cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
+++...++.+++++.++... .++++++++++++|++++.++++++|+++++++||+.+.++.. +|++|.+
T Consensus 273 ~~~~~~~~~k~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 343 (343)
T PRK09880 273 EFPMMTLIVKEISLKGSFRF----TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF 343 (343)
T ss_pred ccCHHHHHhCCcEEEEEeec----cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence 67777777899999988632 3679999999999999888889999999999999999987765 7999875
No 17
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-33 Score=241.06 Aligned_cols=247 Identities=21% Similarity=0.273 Sum_probs=205.4
Q ss_pred ccccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295 14 GLMLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS 66 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~ 66 (269)
-.+|+++.++++ ||+|+... ..|+|+||+.++++.++++|+++++++++++.
T Consensus 66 ~~vG~~v~~~~v-Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~ 144 (347)
T PRK10309 66 EAVGSGVDDLHP-GDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE 144 (347)
T ss_pred EEeCCCCCCCCC-CCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh
Confidence 345788888999 99997642 25899999999999999999999999998774
Q ss_pred cchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH
Q 024295 67 CGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE 146 (269)
Q Consensus 67 ~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~ 146 (269)
+++++++++ ....++++++|||+|+|++|++++|+|+.+|++.|+++++++++.+.++++|+++++++++ .+ .+
T Consensus 145 -~~~~~~~~~-~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~---~~-~~ 218 (347)
T PRK10309 145 -PITVGLHAF-HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSRE---MS-AP 218 (347)
T ss_pred -HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcc---cC-HH
Confidence 566788874 5678899999999999999999999999999956899999999999999999999998875 44 45
Q ss_pred HHHhhhCCCCcc-EEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccch---hHhhhhCCceEEeeeccCCC--CC
Q 024295 147 LVKGITHGMGVD-YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLN---VIALACGGRTLKGTTFGGIK--TK 220 (269)
Q Consensus 147 ~i~~~~~~~~~d-~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~ 220 (269)
.+.+.+++.++| ++|||+|++..+..++++++++ |+++.+|.... ..+++ ...++.+++++.|++..... .+
T Consensus 219 ~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~ 296 (347)
T PRK10309 219 QIQSVLRELRFDQLILETAGVPQTVELAIEIAGPR-AQLALVGTLHH-DLHLTSATFGKILRKELTVIGSWMNYSSPWPG 296 (347)
T ss_pred HHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC-CcccChhhhhHHhhcCcEEEEEeccccCCcch
Confidence 677777666898 9999999887889999999996 99999997653 22232 23466789999998754221 23
Q ss_pred CcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 221 SDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 221 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++++++++++++|+++++++++++|+++++++||+.+.++.. +|+|+++
T Consensus 297 ~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 346 (347)
T PRK10309 297 QEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQI 346 (347)
T ss_pred hHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeC
Confidence 678899999999999888899999999999999999988765 6999875
No 18
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-33 Score=238.72 Aligned_cols=245 Identities=21% Similarity=0.247 Sum_probs=202.2
Q ss_pred cccccCCceeeeecCeEEeeeeccCcccceEeeccCc--eEE--cCCCCCcc-cccccccchhhhHHHHHHhcCCCCCCe
Q 024295 13 NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANY--VVK--VDPSIDPS-DASFLSCGFTTGYGAAWKEAKVEKGSS 87 (269)
Q Consensus 13 ~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~--~~~--vp~~~~~~-~aa~~~~~~~~a~~~l~~~~~~~~~~~ 87 (269)
+..+|+++.++++ ||+|+++ |+|+||..++... +.+ +|++++++ +++.++++++|||+++...++++++++
T Consensus 86 v~~vg~~v~~~~~-Gd~V~~~---~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~ 161 (348)
T PLN03154 86 SKVVDSDDPNFKP-GDLISGI---TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDS 161 (348)
T ss_pred EEEEecCCCCCCC-CCEEEec---CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCE
Confidence 4567888888999 9999865 6799999998753 544 58999986 688899999999999988889999999
Q ss_pred EEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295 88 VAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG 165 (269)
Q Consensus 88 vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g 165 (269)
|||+|+ |++|++++|+||..|+ +|+++++++++.+.++ ++|+++++++++ ..++.+.+++.+++ ++|++||++|
T Consensus 162 VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~--~~~~~~~i~~~~~~-gvD~v~d~vG 237 (348)
T PLN03154 162 VFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKLGFDEAFNYKE--EPDLDAALKRYFPE-GIDIYFDNVG 237 (348)
T ss_pred EEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhcCCCEEEECCC--cccHHHHHHHHCCC-CcEEEEECCC
Confidence 999997 9999999999999999 8999999999999987 799999999864 13677888887765 8999999999
Q ss_pred ChhHHHHHHHHcccCCcEEEEEccCCCccc-----cchhHhhhhCCceEEeeeccCCC--CCCcHHHHHHHHHCCCCCCC
Q 024295 166 VPSLLSEALETTKVGKGKVIVIGVGVDAMV-----PLNVIALACGGRTLKGTTFGGIK--TKSDLPTLLDKCKNKEFKLH 238 (269)
Q Consensus 166 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~ 238 (269)
+. .+..++++++++ |+++.+|....... .++...++.+++++.|+....+. ..+.++++++++++|++++
T Consensus 238 ~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~- 314 (348)
T PLN03154 238 GD-MLDAALLNMKIH-GRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVY- 314 (348)
T ss_pred HH-HHHHHHHHhccC-CEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccC-
Confidence 75 889999999996 99999997543211 12455677789999988654321 1245788999999999764
Q ss_pred cceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 239 QLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 239 ~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
.+..+|+++++++||+.+++++. +|+||++
T Consensus 315 -~~~~~~~L~~~~~A~~~l~~g~~~GKvVl~~ 345 (348)
T PLN03154 315 -IEDMSEGLESAPAALVGLFSGKNVGKQVIRV 345 (348)
T ss_pred -ceecccCHHHHHHHHHHHHcCCCCceEEEEe
Confidence 36678999999999999988876 6999874
No 19
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.7e-33 Score=222.68 Aligned_cols=218 Identities=24% Similarity=0.410 Sum_probs=193.3
Q ss_pred CcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295 37 STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID 116 (269)
Q Consensus 37 g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~ 116 (269)
|+||+|+++++.+++++|++++.+.||.+.|+..|+|..| ...++.||+++-|.|+|++|.+++|+||++|. +|++++
T Consensus 135 ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis 212 (360)
T KOG0023|consen 135 GGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVIS 212 (360)
T ss_pred CccceeEEEeeeeEEECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEe
Confidence 6699999999999999999999999999999999999987 56788899999999997799999999999999 999999
Q ss_pred CCc-chHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccc
Q 024295 117 KNP-WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMV 195 (269)
Q Consensus 117 ~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~ 195 (269)
++. +|.+.++.+|+++.++..+ ++++.+.+.+.+++ ++|-+.+. ....+..++++++.+ |++|++|.+.. +.
T Consensus 213 ~~~~kkeea~~~LGAd~fv~~~~--d~d~~~~~~~~~dg-~~~~v~~~--a~~~~~~~~~~lk~~-Gt~V~vg~p~~-~~ 285 (360)
T KOG0023|consen 213 TSSKKKEEAIKSLGADVFVDSTE--DPDIMKAIMKTTDG-GIDTVSNL--AEHALEPLLGLLKVN-GTLVLVGLPEK-PL 285 (360)
T ss_pred CCchhHHHHHHhcCcceeEEecC--CHHHHHHHHHhhcC-cceeeeec--cccchHHHHHHhhcC-CEEEEEeCcCC-cc
Confidence 887 5666677799999988773 38899999988776 77777665 445788999999996 99999999885 88
Q ss_pred cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
.++.+++..+.+++.||..++ +++.++++++..++.++++ .+..+++++++||+.|++++. .|.|+++
T Consensus 286 ~~~~~~lil~~~~I~GS~vG~---~ket~E~Ldf~a~~~ik~~---IE~v~~~~v~~a~erm~kgdV~yRfVvD~ 354 (360)
T KOG0023|consen 286 KLDTFPLILGRKSIKGSIVGS---RKETQEALDFVARGLIKSP---IELVKLSEVNEAYERMEKGDVRYRFVVDV 354 (360)
T ss_pred cccchhhhcccEEEEeecccc---HHHHHHHHHHHHcCCCcCc---eEEEehhHHHHHHHHHHhcCeeEEEEEEc
Confidence 899999999999999999887 4789999999999998775 468999999999999999987 4888864
No 20
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=2e-32 Score=234.32 Aligned_cols=226 Identities=25% Similarity=0.350 Sum_probs=193.7
Q ss_pred cCcccceEeeccCceEEcCC------CCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC
Q 024295 36 CSTWSEYMVIDANYVVKVDP------SIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA 109 (269)
Q Consensus 36 ~g~~a~~~~v~~~~~~~vp~------~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~ 109 (269)
+|+|+||+.++++.++++|+ ++++++++.+++++.+||+++. ...++++++|+|+|+|++|++++|+|+..|+
T Consensus 113 ~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~~-~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~ 191 (349)
T TIGR03201 113 QGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAV-QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA 191 (349)
T ss_pred CCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 58999999999999999999 8999999999999999999875 5789999999999999999999999999999
Q ss_pred CeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCcc----EEEEccCChhHHHHHHHHcccCCcEEE
Q 024295 110 AKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVD----YCFECTGVPSLLSEALETTKVGKGKVI 185 (269)
Q Consensus 110 ~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d----~v~d~~g~~~~~~~~~~~l~~~~G~~v 185 (269)
+|+++++++++.+.++++|+++++++.+.+.+++.+.+++++++.++| ++|||+|++..++.++++++++ |+++
T Consensus 192 -~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~-G~iv 269 (349)
T TIGR03201 192 -AVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHG-GTLV 269 (349)
T ss_pred -eEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcC-CeEE
Confidence 899999999999999999999999876511235777788888777886 8999999887788899999996 9999
Q ss_pred EEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-ee
Q 024295 186 VIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VK 264 (269)
Q Consensus 186 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k 264 (269)
.+|.... ..+++...++.++.++.+++... .++++++++++.+|++++.++++ +||++++++||+.+.+++. +|
T Consensus 270 ~~G~~~~-~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~i~~g~i~~~~~i~-~~~l~~~~~A~~~~~~~~~~~k 344 (349)
T TIGR03201 270 VVGYTMA-KTEYRLSNLMAFHARALGNWGCP---PDRYPAALDLVLDGKIQLGPFVE-RRPLDQIEHVFAAAHHHKLKRR 344 (349)
T ss_pred EECcCCC-CcccCHHHHhhcccEEEEEecCC---HHHHHHHHHHHHcCCCCcccceE-EecHHHHHHHHHHHHcCCccce
Confidence 9997653 34566667777888898876432 36799999999999998777775 6999999999999988775 59
Q ss_pred EEeeC
Q 024295 265 VLITI 269 (269)
Q Consensus 265 ~vl~~ 269 (269)
+++++
T Consensus 345 ~~~~~ 349 (349)
T TIGR03201 345 AILTP 349 (349)
T ss_pred EEecC
Confidence 88864
No 21
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=100.00 E-value=4.3e-32 Score=233.41 Aligned_cols=251 Identities=26% Similarity=0.403 Sum_probs=209.0
Q ss_pred ccccCCcee------eeecCeEEeeee----------------------------------ccCcccceEeeccC-ceEE
Q 024295 14 GLMLDSTSR------MSVRGQKLYHIF----------------------------------SCSTWSEYMVIDAN-YVVK 52 (269)
Q Consensus 14 ~~vg~~~~~------~~~~Gd~v~~~~----------------------------------~~g~~a~~~~v~~~-~~~~ 52 (269)
-.+|+++.+ +++ ||+|+... ..|+|+||+.++++ .+++
T Consensus 67 ~~vG~~v~~~~~~~~~~~-Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~ 145 (361)
T cd08231 67 VALGGGVTTDVAGEPLKV-GDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVR 145 (361)
T ss_pred EEeCCCccccccCCccCC-CCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEE
Confidence 345777765 888 99998652 24899999999996 7999
Q ss_pred cCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce
Q 024295 53 VDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD 132 (269)
Q Consensus 53 vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~ 132 (269)
+|++++.+++++++++++|||+++......+++++|||+|+|++|++++++|+..|+++|+++++++++.+.++++|++.
T Consensus 146 lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~ 225 (361)
T cd08231 146 VPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADA 225 (361)
T ss_pred CCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCe
Confidence 99999999999998999999999877777779999999999999999999999999978999999999999999999999
Q ss_pred eeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEe
Q 024295 133 FINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKG 211 (269)
Q Consensus 133 v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~ 211 (269)
++++++....++.+.+.+.+++.++|++||++|+...+..++++++++ |+++.+|.... ...+++...++.+++++.+
T Consensus 226 vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~ 304 (361)
T cd08231 226 TIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVAPAGTVPLDPERIVRKNLTIIG 304 (361)
T ss_pred EEcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccC-CEEEEEcCCCCCCccccCHHHHhhcccEEEE
Confidence 888765111223356778887779999999998766789999999996 99999996642 3445565566779999988
Q ss_pred eeccCCCCCCcHHHHHHHHHCC--CCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295 212 TTFGGIKTKSDLPTLLDKCKNK--EFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269 (269)
Q Consensus 212 ~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~ 269 (269)
+.... .+++.++++++.++ .++++++++++|+++++++||+.+.++..+|+||++
T Consensus 305 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~~~k~vi~~ 361 (361)
T cd08231 305 VHNYD---PSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGTALKVVIDP 361 (361)
T ss_pred cccCC---chhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCCceEEEeCC
Confidence 86432 46789999999988 666777889999999999999999887778999875
No 22
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=100.00 E-value=3.3e-32 Score=233.61 Aligned_cols=238 Identities=22% Similarity=0.375 Sum_probs=195.8
Q ss_pred ccccCCceeeeecCeEEeee-----------------------------------eccCcccceEeeccCceEEcCCCCC
Q 024295 14 GLMLDSTSRMSVRGQKLYHI-----------------------------------FSCSTWSEYMVIDANYVVKVDPSID 58 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~-----------------------------------~~~g~~a~~~~v~~~~~~~vp~~~~ 58 (269)
-.+|+++.++++ ||+|+.. ..+|+|+||++++++.++++|++++
T Consensus 79 ~~vG~~v~~~~v-GdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls 157 (360)
T PLN02586 79 TKLGKNVKKFKE-GDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLP 157 (360)
T ss_pred EEECCCCCccCC-CCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCC
Confidence 335788888898 9998631 1158999999999999999999999
Q ss_pred cccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHhCCCceeeCCC
Q 024295 59 PSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKK-EKGKAFGMTDFINPD 137 (269)
Q Consensus 59 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~-~~~~~~g~~~v~~~~ 137 (269)
+++++++++.+.|||+++.....++++++|||.|+|++|++++|+||.+|+ +|++++.++++. +.++++|+++++++.
T Consensus 158 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~Ga~~vi~~~ 236 (360)
T PLN02586 158 LDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRLGADSFLVST 236 (360)
T ss_pred HHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhCCCcEEEcCC
Confidence 999999999999999988766777899999999999999999999999999 788887666554 456789999999875
Q ss_pred CCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC
Q 024295 138 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI 217 (269)
Q Consensus 138 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (269)
+ . +.+++.++ ++|++||++|.+..+..++++++++ |+++.+|.... ..+++...++.++..+.++..+.
T Consensus 237 ~---~---~~~~~~~~--~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~vG~~~~-~~~~~~~~~~~~~~~i~g~~~~~- 305 (360)
T PLN02586 237 D---P---EKMKAAIG--TMDYIIDTVSAVHALGPLLGLLKVN-GKLITLGLPEK-PLELPIFPLVLGRKLVGGSDIGG- 305 (360)
T ss_pred C---H---HHHHhhcC--CCCEEEECCCCHHHHHHHHHHhcCC-cEEEEeCCCCC-CCccCHHHHHhCCeEEEEcCcCC-
Confidence 4 2 24445443 6999999999876889999999996 99999997642 45667777777888888876543
Q ss_pred CCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 218 KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 218 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
.++++++++++.+|++++. + ++|+++++++||+.+.+++. +|+|+++
T Consensus 306 --~~~~~~~~~li~~g~i~~~--~-~~~~l~~~~~A~~~~~~~~~~gkvvi~~ 353 (360)
T PLN02586 306 --IKETQEMLDFCAKHNITAD--I-ELIRMDEINTAMERLAKSDVRYRFVIDV 353 (360)
T ss_pred --HHHHHHHHHHHHhCCCCCc--E-EEEeHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 3578999999999998753 4 58999999999999988876 6999864
No 23
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=100.00 E-value=4e-32 Score=232.75 Aligned_cols=243 Identities=23% Similarity=0.396 Sum_probs=210.7
Q ss_pred cccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295 15 LMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS 66 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~ 66 (269)
.+|+++.++++ ||+|++.. .+|+|+||+.++.+.++++|+++++++++.+
T Consensus 78 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~- 155 (351)
T cd08233 78 EVGSGVTGFKV-GDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALV- 155 (351)
T ss_pred EeCCCCCCCCC-CCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhc-
Confidence 35778888999 99998521 1589999999999999999999999998876
Q ss_pred cchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH
Q 024295 67 CGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE 146 (269)
Q Consensus 67 ~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~ 146 (269)
.++.+||+++ ...+++++++|||+|+|++|++++|+|+..|+++|+++++++++.+.++++|++.++++++ .++.+
T Consensus 156 ~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~---~~~~~ 231 (351)
T cd08233 156 EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTE---VDVVA 231 (351)
T ss_pred cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCc---cCHHH
Confidence 5888999998 7888999999999999999999999999999978999999999999999999999999887 78888
Q ss_pred HHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHH
Q 024295 147 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTL 226 (269)
Q Consensus 147 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (269)
.+++.+++.++|++||++|.+..+..++++++++ |+++.+|... ...+++...++.+++++.++... .++.++++
T Consensus 232 ~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~ 306 (351)
T cd08233 232 EVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPR-GTAVNVAIWE-KPISFNPNDLVLKEKTLTGSICY---TREDFEEV 306 (351)
T ss_pred HHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-CEEEEEccCC-CCCccCHHHHHhhCcEEEEEecc---CcchHHHH
Confidence 8988887768999999999776889999999996 9999999765 35567777777899999988643 24789999
Q ss_pred HHHHHCCCCCCCcceeEEeehhhH-HHHHHHhcCCCe--eeEEee
Q 024295 227 LDKCKNKEFKLHQLLTHHVKLEEI-DKAIQLLKQPDC--VKVLIT 268 (269)
Q Consensus 227 ~~l~~~g~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~--~k~vl~ 268 (269)
+++++++++++.+.++++|+++++ ++||+.+.++.. +|+||.
T Consensus 307 ~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~~ 351 (351)
T cd08233 307 IDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILVS 351 (351)
T ss_pred HHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEeC
Confidence 999999999877888999999996 799998877764 799873
No 24
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=5.3e-32 Score=233.10 Aligned_cols=238 Identities=20% Similarity=0.350 Sum_probs=196.5
Q ss_pred ccccCCceeeeecCeEEeee-----------------------------------eccCcccceEeeccCceEEcCCCCC
Q 024295 14 GLMLDSTSRMSVRGQKLYHI-----------------------------------FSCSTWSEYMVIDANYVVKVDPSID 58 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~-----------------------------------~~~g~~a~~~~v~~~~~~~vp~~~~ 58 (269)
-.+|+++.++++ ||+|... ..+|+|+||++++++.++++|++++
T Consensus 73 v~vG~~v~~~~v-GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls 151 (375)
T PLN02178 73 TKVGKNVTKFKE-GDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLP 151 (375)
T ss_pred EEECCCCCccCC-CCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCC
Confidence 345788888998 9998631 0158999999999999999999999
Q ss_pred cccccccccchhhhHHHHHHhcC-CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHhCCCceeeCC
Q 024295 59 PSDASFLSCGFTTGYGAAWKEAK-VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK-KEKGKAFGMTDFINP 136 (269)
Q Consensus 59 ~~~aa~~~~~~~~a~~~l~~~~~-~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~-~~~~~~~g~~~v~~~ 136 (269)
+++++++++...|||+++..... .+++++|+|.|+|++|++++|+|+.+|+ +|+++++++++ .+.++++|+++++++
T Consensus 152 ~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~~i~~ 230 (375)
T PLN02178 152 SDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADSFLVT 230 (375)
T ss_pred HHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcEEEcC
Confidence 99999999999999998755433 3689999999999999999999999999 78888876554 677889999999987
Q ss_pred CCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccC
Q 024295 137 DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG 216 (269)
Q Consensus 137 ~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (269)
.+ . +.+.+.++ ++|++||++|.+..+..++++++++ |+++.+|... .+.+++...++.+++++.|+....
T Consensus 231 ~~---~---~~v~~~~~--~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~vG~~~-~~~~~~~~~~~~~~~~i~g~~~~~ 300 (375)
T PLN02178 231 TD---S---QKMKEAVG--TMDFIIDTVSAEHALLPLFSLLKVS-GKLVALGLPE-KPLDLPIFPLVLGRKMVGGSQIGG 300 (375)
T ss_pred cC---H---HHHHHhhC--CCcEEEECCCcHHHHHHHHHhhcCC-CEEEEEccCC-CCCccCHHHHHhCCeEEEEeCccC
Confidence 53 2 34555543 7999999999876789999999996 9999999764 345667777778999999987543
Q ss_pred CCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 217 IKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 217 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
.+++.++++++.+|++++. + ++||++++++||+.+.+++. +|+|+.+
T Consensus 301 ---~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gkvvi~~ 348 (375)
T PLN02178 301 ---MKETQEMLEFCAKHKIVSD--I-ELIKMSDINSAMDRLAKSDVRYRFVIDV 348 (375)
T ss_pred ---HHHHHHHHHHHHhCCCccc--E-EEEeHHHHHHHHHHHHcCCCceEEEEEe
Confidence 3578999999999997754 4 57999999999999988876 6999864
No 25
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=6.1e-32 Score=230.17 Aligned_cols=247 Identities=26% Similarity=0.402 Sum_probs=199.5
Q ss_pred ccCCceeeeecCeEEeee-------e-----ccCcccceEeeccCceEE-cCCCCCcccccccccchhhhHHHHHHhcCC
Q 024295 16 MLDSTSRMSVRGQKLYHI-------F-----SCSTWSEYMVIDANYVVK-VDPSIDPSDASFLSCGFTTGYGAAWKEAKV 82 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~-------~-----~~g~~a~~~~v~~~~~~~-vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~ 82 (269)
+.|+.|.+|..|.+.++- . .+|+|+||+++|.+++++ +|++++ .+++++..++.+++++.......
T Consensus 88 ~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~~-~~~aal~epla~~~~~~a~~~~~ 166 (350)
T COG1063 88 IPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGID-EEAAALTEPLATAYHGHAERAAV 166 (350)
T ss_pred cCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCCC-hhhhhhcChhhhhhhhhhhccCC
Confidence 345555555555553322 1 358999999999755555 578874 44555556999998875555556
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
+++.+|+|+|+|++|++++++++..|+++|++++++++|++.+++ .|++.+++..+ ++....+.+.+++.++|++|
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~---~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSE---DDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCcc---ccHHHHHHHHhCCCCCCEEE
Confidence 666699999999999999999999999999999999999999999 66777777665 46777888888888999999
Q ss_pred EccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcce
Q 024295 162 ECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLL 241 (269)
Q Consensus 162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 241 (269)
||+|.+..+..+++.++++ |+++.+|.+......++...++.|++++.|+... ..+.+++.+++++.+|++++.+++
T Consensus 244 e~~G~~~~~~~ai~~~r~g-G~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~--~~~~~~~~~~~ll~~g~i~~~~li 320 (350)
T COG1063 244 EAVGSPPALDQALEALRPG-GTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRP--SGREDFERALDLLASGKIDPEKLI 320 (350)
T ss_pred ECCCCHHHHHHHHHHhcCC-CEEEEEeccCCccCccCHHHHHhcccEEEeccCC--CCcccHHHHHHHHHcCCCChhHce
Confidence 9999988899999999996 9999999887421167777888899999998421 134679999999999999999999
Q ss_pred eEEeehhhHHHHHHHhcCCC--eeeEEeeC
Q 024295 242 THHVKLEEIDKAIQLLKQPD--CVKVLITI 269 (269)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~~~--~~k~vl~~ 269 (269)
++.+++++++++|+.+.+.+ ..|+++.+
T Consensus 321 t~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~ 350 (350)
T COG1063 321 THRLPLDDAAEAYELFADRKEEAIKVVLKP 350 (350)
T ss_pred EeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 99999999999999988754 46999875
No 26
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=100.00 E-value=8.6e-32 Score=228.41 Aligned_cols=231 Identities=19% Similarity=0.249 Sum_probs=194.4
Q ss_pred ccccCCceeeeecCeEEeee----------------------------eccCcccceEeeccCceEEcCCCCCccccccc
Q 024295 14 GLMLDSTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFL 65 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~ 65 (269)
-.+|+++.++++ ||+|+.. ..+|+|+||+.+++..++++|+++++++++.+
T Consensus 69 ~~vG~~v~~~~~-Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l 147 (329)
T TIGR02822 69 AGRGADAGGFAV-GDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPL 147 (329)
T ss_pred EEECCCCcccCC-CCEEEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHH
Confidence 345788888998 9999631 12589999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHH
Q 024295 66 SCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS 145 (269)
Q Consensus 66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~ 145 (269)
++++.|||+++. .++++++++|||+|+|++|++++|+|+..|+ +|+++++++++.+.++++|+++++++.+ ..
T Consensus 148 ~~~~~ta~~~~~-~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~~---~~-- 220 (329)
T TIGR02822 148 LCAGIIGYRALL-RASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGAYD---TP-- 220 (329)
T ss_pred hccchHHHHHHH-hcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceeccccc---cC--
Confidence 999999999974 6889999999999999999999999999999 8999999999999999999999987543 11
Q ss_pred HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHH
Q 024295 146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPT 225 (269)
Q Consensus 146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (269)
..++|+++++.+.+..+..++++++++ |+++.+|.......+++...++.+++++.+++... ++++.+
T Consensus 221 --------~~~~d~~i~~~~~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~ 288 (329)
T TIGR02822 221 --------PEPLDAAILFAPAGGLVPPALEALDRG-GVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSNT---RADARE 288 (329)
T ss_pred --------cccceEEEECCCcHHHHHHHHHhhCCC-cEEEEEeccCccCCCCCHHHHhhCCcEEEEeecCC---HHHHHH
Confidence 126899999888777899999999996 99999997533223566666667899999876432 356888
Q ss_pred HHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEe
Q 024295 226 LLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI 267 (269)
Q Consensus 226 ~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl 267 (269)
+++++++++++ +++++|+++++++||+.+.+++. +|+||
T Consensus 289 ~~~l~~~g~i~---~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl 328 (329)
T TIGR02822 289 FLELAAQHGVR---VTTHTYPLSEADRALRDLKAGRFDGAAVL 328 (329)
T ss_pred HHHHHHhCCCe---eEEEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence 99999999975 35789999999999999988876 69887
No 27
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=100.00 E-value=8e-32 Score=229.73 Aligned_cols=245 Identities=20% Similarity=0.250 Sum_probs=200.9
Q ss_pred cccccCCceeeeecCeEEeeeeccCcccceEeecc-CceEEcC-CCCCcc-cccccccchhhhHHHHHHhcCCCCCCeEE
Q 024295 13 NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDA-NYVVKVD-PSIDPS-DASFLSCGFTTGYGAAWKEAKVEKGSSVA 89 (269)
Q Consensus 13 ~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~-~~~~~vp-~~~~~~-~aa~~~~~~~~a~~~l~~~~~~~~~~~vl 89 (269)
.+++++++..+.+ ||+|+++ |+|+||+++++ ..++++| ++++++ +++.++++++|||+++.+.+++++|++||
T Consensus 81 ~~~v~~~v~~~~v-Gd~V~~~---g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~Vl 156 (338)
T cd08295 81 AKVVDSGNPDFKV-GDLVWGF---TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVF 156 (338)
T ss_pred EEEEecCCCCCCC-CCEEEec---CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEE
Confidence 4567888888999 9999875 68999999999 7999995 678876 78889999999999988889999999999
Q ss_pred EEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh
Q 024295 90 VLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP 167 (269)
Q Consensus 90 I~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~ 167 (269)
|+|+ |++|++++|+|+..|+ +|+++++++++.+.+++ +|+++++++.+ ..++.+.+++.++ .++|++||++|+.
T Consensus 157 I~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~--~~~~~~~i~~~~~-~gvd~v~d~~g~~ 232 (338)
T cd08295 157 VSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGFDDAFNYKE--EPDLDAALKRYFP-NGIDIYFDNVGGK 232 (338)
T ss_pred EecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCceeEEcCC--cccHHHHHHHhCC-CCcEEEEECCCHH
Confidence 9996 9999999999999999 89999999999999998 99999998653 1478888887776 4999999999974
Q ss_pred hHHHHHHHHcccCCcEEEEEccCCCccc-----cchhHhhhhCCceEEeeeccCCCC--CCcHHHHHHHHHCCCCCCCcc
Q 024295 168 SLLSEALETTKVGKGKVIVIGVGVDAMV-----PLNVIALACGGRTLKGTTFGGIKT--KSDLPTLLDKCKNKEFKLHQL 240 (269)
Q Consensus 168 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~~~ 240 (269)
.+..++++++++ |+++.+|....... ..+...+.++++++.++....+.. .+.+.++++++.+|++++.
T Consensus 233 -~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~-- 308 (338)
T cd08295 233 -MLDAVLLNMNLH-GRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYV-- 308 (338)
T ss_pred -HHHHHHHHhccC-cEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEce--
Confidence 789999999996 99999986543111 123445666888888865443221 2347788999999997754
Q ss_pred eeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 241 LTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
+...|+++++++|++.++++.. +|+|+++
T Consensus 309 ~~~~~~l~~~~~A~~~~~~~~~~GkvVl~~ 338 (338)
T cd08295 309 EDIADGLESAPEAFVGLFTGSNIGKQVVKV 338 (338)
T ss_pred eecccCHHHHHHHHHHHhcCCCCceEEEEC
Confidence 4456999999999999988766 6999874
No 28
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=100.00 E-value=5e-32 Score=225.00 Aligned_cols=205 Identities=25% Similarity=0.359 Sum_probs=175.2
Q ss_pred cCcccceEeeccC-ceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEE
Q 024295 36 CSTWSEYMVIDAN-YVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIG 114 (269)
Q Consensus 36 ~g~~a~~~~v~~~-~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~ 114 (269)
+|+|+||++++++ .++++|+++++++++.+++.+.||++++. .....++++|||+|+|++|++++|+||.+|+++|++
T Consensus 72 ~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~ 150 (280)
T TIGR03366 72 SGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAALE-AAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVA 150 (280)
T ss_pred cccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHH-hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 5899999999997 79999999999999999999999999874 455669999999999999999999999999966999
Q ss_pred EcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-c
Q 024295 115 IDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-A 193 (269)
Q Consensus 115 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~ 193 (269)
++++++|.+.++++|++.+++..+ ..+.+++.+++.++|++||++|.+..++.++++++++ |+++.+|.... .
T Consensus 151 ~~~~~~r~~~a~~~Ga~~~i~~~~-----~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~ 224 (280)
T TIGR03366 151 ADPSPDRRELALSFGATALAEPEV-----LAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVG-GTAVLAGSVFPGG 224 (280)
T ss_pred ECCCHHHHHHHHHcCCcEecCchh-----hHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEeccCCCCC
Confidence 999999999999999999887643 2456667776668999999999887889999999996 99999997542 3
Q ss_pred cccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCC--CCCCCcceeEEeehhhH
Q 024295 194 MVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK--EFKLHQLLTHHVKLEEI 250 (269)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~ 250 (269)
+.++++..++.|++++.|+... ..++++++++++.++ +++++++++++||++++
T Consensus 225 ~~~i~~~~~~~~~~~i~g~~~~---~~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~ 280 (280)
T TIGR03366 225 PVALDPEQVVRRWLTIRGVHNY---EPRHLDQAVRFLAANGQRFPFEELVGKPFPLADV 280 (280)
T ss_pred ceeeCHHHHHhCCcEEEecCCC---CHHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence 4567778888899999998643 236799999999984 67777889999999863
No 29
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=100.00 E-value=3.9e-31 Score=228.85 Aligned_cols=248 Identities=21% Similarity=0.262 Sum_probs=194.0
Q ss_pred cccccCCceeeeecCeEEeee-------------------------------------eccCcccceEeeccC--ceEEc
Q 024295 13 NGLMLDSTSRMSVRGQKLYHI-------------------------------------FSCSTWSEYMVIDAN--YVVKV 53 (269)
Q Consensus 13 ~~~vg~~~~~~~~~Gd~v~~~-------------------------------------~~~g~~a~~~~v~~~--~~~~v 53 (269)
+-.+|+++.++++ ||+|... ..+|+||||+++++. .++++
T Consensus 73 V~~vG~~V~~~~v-GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~v 151 (393)
T TIGR02819 73 VIEKGRDVEFIKI-GDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKF 151 (393)
T ss_pred EEEEcCccccccC-CCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEEC
Confidence 3445788888888 9998531 024899999999964 79999
Q ss_pred CCCCCc----ccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC
Q 024295 54 DPSIDP----SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG 129 (269)
Q Consensus 54 p~~~~~----~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g 129 (269)
|++++. .+++.+.+++.+||+++. +.+++++++|||.|+|++|++++|+|+.+|++.++++++++++.+.++++|
T Consensus 152 P~~~~~~~~~~~~a~l~~~~~ta~~a~~-~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~G 230 (393)
T TIGR02819 152 PDRDQALEKIRDLTMLSDIFPTGYHGAV-TAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFG 230 (393)
T ss_pred CCcccccccccceeeeccHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcC
Confidence 998753 356777788999999874 578999999999999999999999999999966777778888999999999
Q ss_pred CceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh--------------hHHHHHHHHcccCCcEEEEEccCCC-cc
Q 024295 130 MTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP--------------SLLSEALETTKVGKGKVIVIGVGVD-AM 194 (269)
Q Consensus 130 ~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~--------------~~~~~~~~~l~~~~G~~v~~g~~~~-~~ 194 (269)
++.+....+ .++.+.+.+.+++.++|++||++|.+ ..++.+++.++++ |+++.+|.+.. ..
T Consensus 231 a~~v~~~~~---~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~i~~~G~~~~~~~ 306 (393)
T TIGR02819 231 CETVDLSKD---ATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVG-GAIGIPGLYVTEDP 306 (393)
T ss_pred CeEEecCCc---ccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCC-CEEEEeeecCCccc
Confidence 975443333 56777788887777899999999986 3789999999996 99999998631 11
Q ss_pred -----------ccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCccee-EEeehhhHHHHHHHhcCCCe
Q 024295 195 -----------VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLT-HHVKLEEIDKAIQLLKQPDC 262 (269)
Q Consensus 195 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 262 (269)
.++.....+.++.++.++.. ...+.+.++++++.+|+++++++++ ++||++++++||+.+.+++.
T Consensus 307 ~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~~---~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~~~~~~ 383 (393)
T TIGR02819 307 GAVDAAAKTGSLSIRFGLGWAKSHSFHTGQT---PVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEFDAGAA 383 (393)
T ss_pred ccccccccccccccchHHhhccCceEEeccC---ChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHHhhCCc
Confidence 12223334446666665321 1123347899999999999887777 78999999999999988877
Q ss_pred eeEEeeC
Q 024295 263 VKVLITI 269 (269)
Q Consensus 263 ~k~vl~~ 269 (269)
+|++|++
T Consensus 384 ~Kvvi~~ 390 (393)
T TIGR02819 384 KKFVIDP 390 (393)
T ss_pred eEEEEeC
Confidence 8999875
No 30
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=100.00 E-value=6.8e-31 Score=226.13 Aligned_cols=227 Identities=41% Similarity=0.700 Sum_probs=196.5
Q ss_pred cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295 36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI 115 (269)
Q Consensus 36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~ 115 (269)
.|+|++|+.++++.++++|+++++++++.+.+++.+||+++...+.++++++|||+|+|++|++++++|+..|++.|+++
T Consensus 135 ~g~~a~~~~v~~~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~ 214 (365)
T cd05279 135 TSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAV 214 (365)
T ss_pred cccccceEEecCCceEECCCCCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 36899999999999999999999999999999999999998888999999999999999999999999999999668888
Q ss_pred cCCcchHHHHHhCCCceeeCCCCCCCc--cHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcc-cCCcEEEEEccCCC
Q 024295 116 DKNPWKKEKGKAFGMTDFINPDDEPNK--SISELVKGITHGMGVDYCFECTGVPSLLSEALETTK-VGKGKVIVIGVGVD 192 (269)
Q Consensus 116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~--~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~-~~~G~~v~~g~~~~ 192 (269)
++++++.+.++++|++++++..+ . ++.+.++++++ .++|+++|++|....+..++++++ ++ |+++.+|....
T Consensus 215 ~~~~~~~~~~~~~g~~~~v~~~~---~~~~~~~~l~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~ 289 (365)
T cd05279 215 DINKDKFEKAKQLGATECINPRD---QDKPIVEVLTEMTD-GGVDYAFEVIGSADTLKQALDATRLGG-GTSVVVGVPPS 289 (365)
T ss_pred eCCHHHHHHHHHhCCCeeccccc---ccchHHHHHHHHhC-CCCcEEEECCCCHHHHHHHHHHhccCC-CEEEEEecCCC
Confidence 88999999999999999998765 4 67778888776 489999999987668899999999 96 99999986542
Q ss_pred -ccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295 193 -AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268 (269)
Q Consensus 193 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~ 268 (269)
....++...+ .++.++.|++...+...+.+..++++++++.+++.++++++++++++++||+.+++++..|++++
T Consensus 290 ~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~ 365 (365)
T cd05279 290 GTEATLDPNDL-LTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGESIRTILT 365 (365)
T ss_pred CCceeeCHHHH-hcCCeEEEEeccCCchHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence 3455666666 58888888876665556789999999999998876678889999999999999988777888774
No 31
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=100.00 E-value=8e-31 Score=225.69 Aligned_cols=227 Identities=32% Similarity=0.530 Sum_probs=195.0
Q ss_pred cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295 36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI 115 (269)
Q Consensus 36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~ 115 (269)
.|+|++|+++++.+++++|+++++++++.+++.+++|++++.....++++++|||+|+|++|++++|+|+..|++.++++
T Consensus 138 ~g~~~~y~~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~ 217 (365)
T cd08278 138 QSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAV 217 (365)
T ss_pred ccceeeEEEecchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 48899999999999999999999999999999999999998888899999999999989999999999999999779999
Q ss_pred cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-cc
Q 024295 116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AM 194 (269)
Q Consensus 116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~ 194 (269)
++++++.+.++++|++.++++.+ .++.+.+.+.+ +.++|+++|++|.+..+..++++++++ |+++.+|.... ..
T Consensus 218 ~~~~~k~~~~~~~g~~~~i~~~~---~~~~~~v~~~~-~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~ 292 (365)
T cd08278 218 DIVDSRLELAKELGATHVINPKE---EDLVAAIREIT-GGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAE 292 (365)
T ss_pred eCCHHHHHHHHHcCCcEEecCCC---cCHHHHHHHHh-CCCCcEEEECCCCcHHHHHHHHHhccC-CEEEEeCcCCCCCc
Confidence 99999999999999999998876 67888888877 559999999999766889999999996 99999997632 34
Q ss_pred ccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295 195 VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268 (269)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~ 268 (269)
..++...++.++.++.++........+.++++++++.++++.+.+.+ ..+++++++++++.+.++...|++++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~-~~~~l~~~~~a~~~~~~~~~~k~~~~ 365 (365)
T cd08278 293 VTLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLV-TFYPFEDINQAIADSESGKVIKPVLR 365 (365)
T ss_pred cccCHHHHhhcCceEEEeecCCcChHHHHHHHHHHHHcCCCChHHhe-EEecHHHHHHHHHHHHCCCceEEEEC
Confidence 56666666568999988765433334567889999999997553344 47999999999999988877899875
No 32
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=100.00 E-value=7.9e-31 Score=222.36 Aligned_cols=242 Identities=18% Similarity=0.206 Sum_probs=197.8
Q ss_pred cccCCcee-eeecCeEEeeeec-cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEE-
Q 024295 15 LMLDSTSR-MSVRGQKLYHIFS-CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL- 91 (269)
Q Consensus 15 ~vg~~~~~-~~~~Gd~v~~~~~-~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~- 91 (269)
.+|+++.+ +++ ||+|++... +|+|+||+.++++.++++|+++++++++.+++.++|||.. ...... ++++++|+
T Consensus 74 ~vG~~v~~~~~v-Gd~V~~~~~~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~-~~~~~~-~~~~vlv~~ 150 (324)
T cd08291 74 AAGGGPLAQSLI-GKRVAFLAGSYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGM-LETARE-EGAKAVVHT 150 (324)
T ss_pred EECCCccccCCC-CCEEEecCCCCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHH-HHhhcc-CCCcEEEEc
Confidence 35777775 888 999987654 3899999999999999999999999999888888999754 455555 55566665
Q ss_pred -cCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHH
Q 024295 92 -GLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLL 170 (269)
Q Consensus 92 -G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~ 170 (269)
|+|++|++++|+|+.+|+ +|+++++++++.+.++++|+++++++.+ .++.+.+++.+++.++|++||++|+. ..
T Consensus 151 ~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~v~~~~~~~~~d~vid~~g~~-~~ 225 (324)
T cd08291 151 AAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGAEYVLNSSD---PDFLEDLKELIAKLNATIFFDAVGGG-LT 225 (324)
T ss_pred cCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEECCC---ccHHHHHHHHhCCCCCcEEEECCCcH-HH
Confidence 469999999999999999 8999999999999999999999999887 78889999888877999999999987 55
Q ss_pred HHHHHHcccCCcEEEEEccCCCccc-cchhHhhhhCCceEEeeeccCCCC---CCcHHHHHHHHHCCCCCCCcceeEEee
Q 024295 171 SEALETTKVGKGKVIVIGVGVDAMV-PLNVIALACGGRTLKGTTFGGIKT---KSDLPTLLDKCKNKEFKLHQLLTHHVK 246 (269)
Q Consensus 171 ~~~~~~l~~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~ 246 (269)
...+++++++ |+++.+|....... .++...++.+++++.++....+.. .+.+.+++++++ ++ +++.++++|+
T Consensus 226 ~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~i~~~~~ 301 (324)
T cd08291 226 GQILLAMPYG-STLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-TE--LKTTFASRYP 301 (324)
T ss_pred HHHHHhhCCC-CEEEEEEecCCCCcccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-Cc--cccceeeEEc
Confidence 7789999996 99999986543222 355556667999999887654321 245778888887 76 4566889999
Q ss_pred hhhHHHHHHHhcCCCe-eeEEee
Q 024295 247 LEEIDKAIQLLKQPDC-VKVLIT 268 (269)
Q Consensus 247 ~~~~~~a~~~~~~~~~-~k~vl~ 268 (269)
++++.+||+.+.++.. +|+++.
T Consensus 302 l~~~~~a~~~~~~~~~~Gkvv~~ 324 (324)
T cd08291 302 LALTLEAIAFYSKNMSTGKKLLI 324 (324)
T ss_pred HHHHHHHHHHHHhCCCCCeEEeC
Confidence 9999999999888655 798874
No 33
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=99.98 E-value=1.2e-30 Score=223.82 Aligned_cols=237 Identities=27% Similarity=0.317 Sum_probs=185.7
Q ss_pred cccCCceeeeecCeEEeeee------------------------------ccCcccceEeeccCceEEcCCCCCcccccc
Q 024295 15 LMLDSTSRMSVRGQKLYHIF------------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASF 64 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~------------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~ 64 (269)
.+|++ ..+++ ||+|+... .+|+|+||+.++++.++++|++++ +. +.
T Consensus 71 ~vG~~-~~~~v-GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~-~~-a~ 146 (355)
T cd08230 71 EVGDG-SGLSP-GDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA-DV-GV 146 (355)
T ss_pred EecCC-CCCCC-CCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC-cc-ee
Confidence 34777 78998 99997532 248899999999999999999999 44 44
Q ss_pred cccchhhhHHHHHH------hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcC---CcchHHHHHhCCCceeeC
Q 024295 65 LSCGFTTGYGAAWK------EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDK---NPWKKEKGKAFGMTDFIN 135 (269)
Q Consensus 65 ~~~~~~~a~~~l~~------~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~---~~~~~~~~~~~g~~~v~~ 135 (269)
+..++.+++.++.. ...++++++|||+|+|++|++++|+||..|+ +|+++++ ++++++.++++|++. ++
T Consensus 147 ~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~-v~ 224 (355)
T cd08230 147 LLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATY-VN 224 (355)
T ss_pred ecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEE-ec
Confidence 44577666655432 2235789999999999999999999999999 8999987 678999999999987 56
Q ss_pred CCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccch----hHhhhhCCceEE
Q 024295 136 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLN----VIALACGGRTLK 210 (269)
Q Consensus 136 ~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~----~~~~~~~~~~~~ 210 (269)
+.+ +++.+ .+ .. .++|++||++|.+..+..+++.++++ |+++.+|.... ...+++ ...++.+++++.
T Consensus 225 ~~~---~~~~~-~~--~~-~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~ 296 (355)
T cd08230 225 SSK---TPVAE-VK--LV-GEFDLIIEATGVPPLAFEALPALAPN-GVVILFGVPGGGREFEVDGGELNRDLVLGNKALV 296 (355)
T ss_pred CCc---cchhh-hh--hc-CCCCEEEECcCCHHHHHHHHHHccCC-cEEEEEecCCCCCccccChhhhhhhHhhcCcEEE
Confidence 654 44433 22 12 38999999999877889999999996 99999997664 344454 345667999999
Q ss_pred eeeccCCCCCCcHHHHHHHHHCCCC----CCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295 211 GTTFGGIKTKSDLPTLLDKCKNKEF----KLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269 (269)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~g~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~ 269 (269)
|+.... ++++.++++++.+++. .++++++++|+++++.+||+.+.++. +|+||+|
T Consensus 297 g~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~-~K~v~~~ 355 (355)
T cd08230 297 GSVNAN---KRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE-IKVVIEW 355 (355)
T ss_pred EecCCc---hhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC-eEEEeeC
Confidence 986443 3678999999988772 36677899999999999999887654 6999976
No 34
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=99.98 E-value=1.5e-30 Score=223.19 Aligned_cols=237 Identities=23% Similarity=0.367 Sum_probs=195.6
Q ss_pred cccCCceeeeecCeEEeee-----------------------------------eccCcccceEeeccCceEEcCCCCCc
Q 024295 15 LMLDSTSRMSVRGQKLYHI-----------------------------------FSCSTWSEYMVIDANYVVKVDPSIDP 59 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~-----------------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~ 59 (269)
.+|+++.++++ ||+|+.. ..+|+|+||++++...++++|+++++
T Consensus 77 ~vG~~v~~~~~-Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~ 155 (357)
T PLN02514 77 EVGSDVSKFTV-GDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAP 155 (357)
T ss_pred EECCCcccccC-CCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCH
Confidence 35788888999 9999631 12589999999999999999999999
Q ss_pred ccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCceeeCCCC
Q 024295 60 SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDFINPDD 138 (269)
Q Consensus 60 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~ 138 (269)
++++.+++.+.|||+++......+++++|+|+|+|++|++++|+||..|+ +++++++++++...+ +++|+++++++.+
T Consensus 156 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~ 234 (357)
T PLN02514 156 EQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGADDYLVSSD 234 (357)
T ss_pred HHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCcEEecCCC
Confidence 99999999999999998766667899999999999999999999999999 788888777666554 5699988877643
Q ss_pred CCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCC
Q 024295 139 EPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIK 218 (269)
Q Consensus 139 ~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (269)
. +.+.+.++ ++|++||++|....+..++++++++ |+++.+|.... ..+++...++.+++++.|++...
T Consensus 235 ---~---~~~~~~~~--~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~-- 302 (357)
T PLN02514 235 ---A---AEMQEAAD--SLDYIIDTVPVFHPLEPYLSLLKLD-GKLILMGVINT-PLQFVTPMLMLGRKVITGSFIGS-- 302 (357)
T ss_pred ---h---HHHHHhcC--CCcEEEECCCchHHHHHHHHHhccC-CEEEEECCCCC-CCcccHHHHhhCCcEEEEEecCC--
Confidence 2 23444442 7999999999766889999999996 99999997653 45677777778999999987554
Q ss_pred CCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 219 TKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 219 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
..++.++++++.+|+++ +++ ++||++++.+||+.+.++.. +|+++.+
T Consensus 303 -~~~~~~~~~~~~~g~l~--~~i-~~~~l~~~~~A~~~~~~~~~~gk~v~~~ 350 (357)
T PLN02514 303 -MKETEEMLEFCKEKGLT--SMI-EVVKMDYVNTAFERLEKNDVRYRFVVDV 350 (357)
T ss_pred -HHHHHHHHHHHHhCCCc--CcE-EEEcHHHHHHHHHHHHcCCCceeEEEEc
Confidence 35789999999999854 455 58999999999999988776 5998864
No 35
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=99.98 E-value=4.2e-30 Score=221.70 Aligned_cols=230 Identities=39% Similarity=0.660 Sum_probs=191.9
Q ss_pred cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295 36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI 115 (269)
Q Consensus 36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~ 115 (269)
.|+|+||++++++.++++|+++++++++++++++.+||+++...++++++++|||+|+|++|++++++++..|+.+|+++
T Consensus 142 ~G~~~e~~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~ 221 (373)
T cd08299 142 TSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAV 221 (373)
T ss_pred CCcccceEEecccceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 48899999999999999999999999999999999999998888999999999999999999999999999998679999
Q ss_pred cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHc-ccCCcEEEEEccCCC-c
Q 024295 116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT-KVGKGKVIVIGVGVD-A 193 (269)
Q Consensus 116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l-~~~~G~~v~~g~~~~-~ 193 (269)
++++++++.++++|++++++..+ ...++.+.+.+++++ ++|+++|++|.+..+..++..+ +++ |+++.+|.... .
T Consensus 222 ~~~~~~~~~a~~lGa~~~i~~~~-~~~~~~~~v~~~~~~-~~d~vld~~g~~~~~~~~~~~~~~~~-G~~v~~g~~~~~~ 298 (373)
T cd08299 222 DINKDKFAKAKELGATECINPQD-YKKPIQEVLTEMTDG-GVDFSFEVIGRLDTMKAALASCHEGY-GVSVIVGVPPSSQ 298 (373)
T ss_pred cCCHHHHHHHHHcCCceEecccc-cchhHHHHHHHHhCC-CCeEEEECCCCcHHHHHHHHhhccCC-CEEEEEccCCCCc
Confidence 99999999999999999998764 012366777777764 8999999999766777767765 565 99999997643 2
Q ss_pred cccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295 194 MVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269 (269)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~ 269 (269)
..+++...+ .++.++.+++.+.+..++.+.++++.+.++.++++++++++|++++++++|+.+.++...|+++++
T Consensus 299 ~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~~k~~~~~ 373 (373)
T cd08299 299 NLSINPMLL-LTGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKSIRTVLTF 373 (373)
T ss_pred eeecCHHHH-hcCCeEEEEEecCCccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCcceEEEeC
Confidence 344444334 377899988776654446677888888888877777788999999999999999887777998874
No 36
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.98 E-value=8.1e-31 Score=220.54 Aligned_cols=226 Identities=18% Similarity=0.273 Sum_probs=180.2
Q ss_pred ccCCceeeeecCeEEeeee---------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCC
Q 024295 16 MLDSTSRMSVRGQKLYHIF---------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGS 86 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~---------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~ 86 (269)
+|+++ .+++ ||+|+... ..|+|+||+.++++.++++|++++++. ++++ ++.+||+++.+ . ..+++
T Consensus 73 vG~~v-~~~v-GdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~ 146 (308)
T TIGR01202 73 AGPDT-GFRP-GDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALLA-LAATARHAVAG-A-EVKVL 146 (308)
T ss_pred ecCCC-CCCC-CCEEEEeCccccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCC
Confidence 46776 5888 99998532 149999999999999999999999764 5554 57899998754 3 34688
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295 87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV 166 (269)
Q Consensus 87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~ 166 (269)
++||+|+|++|++++|+||++|++.|+++++++++++.++.+ +++|+.+ . .+.++|++|||+|+
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i~~~~---~----------~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVLDPEK---D----------PRRDYRAIYDASGD 210 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---cccChhh---c----------cCCCCCEEEECCCC
Confidence 999999999999999999999996677787777776666543 4555432 1 13389999999999
Q ss_pred hhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEee
Q 024295 167 PSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVK 246 (269)
Q Consensus 167 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 246 (269)
+..++.++++++++ |+++.+|.... +.+++...++.+++++.++... .+++++++++++++|+++++++++++||
T Consensus 211 ~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~l~~~g~i~~~~~it~~~~ 285 (308)
T TIGR01202 211 PSLIDTLVRRLAKG-GEIVLAGFYTE-PVNFDFVPAFMKEARLRIAAEW---QPGDLHAVRELIESGALSLDGLITHQRP 285 (308)
T ss_pred HHHHHHHHHhhhcC-cEEEEEeecCC-CcccccchhhhcceEEEEeccc---chhHHHHHHHHHHcCCCChhhccceeec
Confidence 87789999999996 99999997653 4556666677788999887533 2367999999999999998889999999
Q ss_pred hhhHHHHHHHhcCC-CeeeEEee
Q 024295 247 LEEIDKAIQLLKQP-DCVKVLIT 268 (269)
Q Consensus 247 ~~~~~~a~~~~~~~-~~~k~vl~ 268 (269)
++++++||+.+.++ ..+|++|+
T Consensus 286 l~~~~~A~~~~~~~~~~~Kv~~~ 308 (308)
T TIGR01202 286 ASDAAEAYMTAFSDPDCLKMILD 308 (308)
T ss_pred HHHHHHHHHHHhcCcCceEEEeC
Confidence 99999999977654 44799874
No 37
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.97 E-value=3.2e-30 Score=224.97 Aligned_cols=249 Identities=20% Similarity=0.225 Sum_probs=197.7
Q ss_pred cccccCCce-eeeecCeEEeeee----------------ccCcccceEeeccC----ceEEcCCCCCcccccccccchh-
Q 024295 13 NGLMLDSTS-RMSVRGQKLYHIF----------------SCSTWSEYMVIDAN----YVVKVDPSIDPSDASFLSCGFT- 70 (269)
Q Consensus 13 ~~~vg~~~~-~~~~~Gd~v~~~~----------------~~g~~a~~~~v~~~----~~~~vp~~~~~~~aa~~~~~~~- 70 (269)
+-.+|+++. ++++ ||+|+... .+|+|+||++++++ .++++|+++++++++++. ++.
T Consensus 74 V~~vG~~v~~~~~v-GdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~e-pl~~ 151 (410)
T cd08238 74 ILKVGKKWQGKYKP-GQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVE-PLSC 151 (410)
T ss_pred EEEeCCCccCCCCC-CCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcc-hHHH
Confidence 344578876 5999 99997532 25899999999987 689999999999888652 222
Q ss_pred --hhHHHH--------HHhcCCCCCCeEEEEc-CChhHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHhC--------C
Q 024295 71 --TGYGAA--------WKEAKVEKGSSVAVLG-LGTVGLGAVDGARMHG--AAKIIGIDKNPWKKEKGKAF--------G 129 (269)
Q Consensus 71 --~a~~~l--------~~~~~~~~~~~vlI~G-~g~~G~~a~~la~~~g--~~~v~~~~~~~~~~~~~~~~--------g 129 (269)
+++.++ ..+++++++++|+|+| +|++|++++|+|+..| +.+|++++++++|++.++++ |
T Consensus 152 ~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~G 231 (410)
T cd08238 152 VIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRG 231 (410)
T ss_pred HHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccC
Confidence 233332 2457889999999998 5999999999999974 45899999999999999997 6
Q ss_pred Cc-eeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC-C-ccccchhHhhhhCC
Q 024295 130 MT-DFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV-D-AMVPLNVIALACGG 206 (269)
Q Consensus 130 ~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~-~-~~~~~~~~~~~~~~ 206 (269)
++ .++++.+ ..++.+.+++++++.++|++||++|.+..+..++++++++ |+++.++... . ...+++...++.++
T Consensus 232 a~~~~i~~~~--~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~-G~~v~~~g~~~~~~~~~~~~~~~~~~~ 308 (410)
T cd08238 232 IELLYVNPAT--IDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPD-GCLNFFAGPVDKNFSAPLNFYNVHYNN 308 (410)
T ss_pred ceEEEECCCc--cccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccC-CeEEEEEccCCCCccccccHHHhhhcC
Confidence 66 5677643 1467788888888779999999999877899999999996 8887765332 1 23467777788899
Q ss_pred ceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295 207 RTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269 (269)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~ 269 (269)
+++.|+.... +++++++++++.+|++++.++++++||++++++||+.+..+..+|+||.+
T Consensus 309 ~~i~g~~~~~---~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~gKvvl~~ 368 (410)
T cd08238 309 THYVGTSGGN---TDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLPGIPGGKKLIYT 368 (410)
T ss_pred cEEEEeCCCC---HHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhhccCCceEEEEC
Confidence 9999986433 36799999999999999888999999999999999999844347999864
No 38
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.97 E-value=7.1e-30 Score=218.84 Aligned_cols=247 Identities=23% Similarity=0.390 Sum_probs=202.3
Q ss_pred cccCCceeeeecCeEEeeee------------------------------ccCcccceEeeccC--ceEEcCCCCCcccc
Q 024295 15 LMLDSTSRMSVRGQKLYHIF------------------------------SCSTWSEYMVIDAN--YVVKVDPSIDPSDA 62 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~------------------------------~~g~~a~~~~v~~~--~~~~vp~~~~~~~a 62 (269)
.+|+++.++.+ ||+|+... .+|+|+||+.++.+ .++++|++++++++
T Consensus 67 ~vG~~v~~~~~-Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~a 145 (351)
T cd08285 67 EVGSEVKDFKP-GDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQA 145 (351)
T ss_pred EecCCcCccCC-CCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHh
Confidence 35778888888 99998632 25899999999974 89999999999999
Q ss_pred cccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCc
Q 024295 63 SFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNK 142 (269)
Q Consensus 63 a~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~ 142 (269)
+.++.++++|++++ ..+.++++++|||+|+|++|++++|+|+.+|++.++++++++++.+.++++|+++++++.+ .
T Consensus 146 a~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~---~ 221 (351)
T cd08285 146 VMLPDMMSTGFHGA-ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKN---G 221 (351)
T ss_pred hhhccchhhHHHHH-HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCC---C
Confidence 99988999999985 6788999999999999999999999999999977999999999999999999999999876 7
Q ss_pred cHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchh--HhhhhCCceEEeeeccCCCC
Q 024295 143 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNV--IALACGGRTLKGTTFGGIKT 219 (269)
Q Consensus 143 ~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 219 (269)
++.+.+.+.+++.++|+++|++|++..+..++++++++ |+++.+|.... ...+++. .....+..++.+.... ..
T Consensus 222 ~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~ 298 (351)
T cd08285 222 DVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCP--GG 298 (351)
T ss_pred CHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCCCceeecChhhhhhhccccEEEEeecC--Cc
Confidence 78888888777678999999999877889999999996 99999987653 2233332 2222355666654321 12
Q ss_pred CCcHHHHHHHHHCCCCCCCc-ceeEEeehhhHHHHHHHhcCCC--eeeEEeeC
Q 024295 220 KSDLPTLLDKCKNKEFKLHQ-LLTHHVKLEEIDKAIQLLKQPD--CVKVLITI 269 (269)
Q Consensus 220 ~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~a~~~~~~~~--~~k~vl~~ 269 (269)
.+.++++++++.+|++++.. .+.+++++++++++++.+.++. .+|++|++
T Consensus 299 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~ 351 (351)
T cd08285 299 RLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF 351 (351)
T ss_pred cccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence 46799999999999988743 3445699999999999998876 36999875
No 39
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.97 E-value=9.4e-31 Score=223.18 Aligned_cols=230 Identities=20% Similarity=0.260 Sum_probs=180.4
Q ss_pred CceeeeecCeEEeeee------------------------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHH
Q 024295 19 STSRMSVRGQKLYHIF------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYG 74 (269)
Q Consensus 19 ~~~~~~~~Gd~v~~~~------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~ 74 (269)
+...+++ ||+|+... .+|+|+||+.+|+++++++|+++++++|+++. ++++|++
T Consensus 74 g~~~~~v-GdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~~~-~~~~a~~ 151 (341)
T cd08237 74 PTGTYKV-GTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAAFTE-LVSVGVH 151 (341)
T ss_pred CCCccCC-CCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhhhhc-hHHHHHH
Confidence 3346888 99997431 24889999999999999999999999888664 8899999
Q ss_pred HHHH--hcCCCCCCeEEEEcCChhHHHHHHHHHH-cCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhh
Q 024295 75 AAWK--EAKVEKGSSVAVLGLGTVGLGAVDGARM-HGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGI 151 (269)
Q Consensus 75 ~l~~--~~~~~~~~~vlI~G~g~~G~~a~~la~~-~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~ 151 (269)
++.. ...++++++|||+|+|++|++++|+++. .|..+|++++++++|++.+++.+++..++ ++
T Consensus 152 a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~-------~~------- 217 (341)
T cd08237 152 AISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLID-------DI------- 217 (341)
T ss_pred HHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehh-------hh-------
Confidence 8754 3457889999999999999999999996 66558999999999999998866553321 11
Q ss_pred hCCCCccEEEEccCC---hhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHH
Q 024295 152 THGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLD 228 (269)
Q Consensus 152 ~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (269)
.++.++|++||++|+ +..+..++++++++ |+++.+|... .+.+++...++.+++++.++.... .++++++++
T Consensus 218 ~~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~k~~~i~g~~~~~---~~~~~~~~~ 292 (341)
T cd08237 218 PEDLAVDHAFECVGGRGSQSAINQIIDYIRPQ-GTIGLMGVSE-YPVPINTRMVLEKGLTLVGSSRST---REDFERAVE 292 (341)
T ss_pred hhccCCcEEEECCCCCccHHHHHHHHHhCcCC-cEEEEEeecC-CCcccCHHHHhhCceEEEEecccC---HHHHHHHHH
Confidence 112379999999994 45789999999996 9999999754 345667777778999999986432 357899999
Q ss_pred HHHCC---CCCCCcceeEEeehh---hHHHHHHHhcCCCeeeEEeeC
Q 024295 229 KCKNK---EFKLHQLLTHHVKLE---EIDKAIQLLKQPDCVKVLITI 269 (269)
Q Consensus 229 l~~~g---~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~k~vl~~ 269 (269)
++.++ +.+++++++++|+++ ++.++|+.+.++..+|+||++
T Consensus 293 ~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~~~gKvvi~~ 339 (341)
T cd08237 293 LLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTNSWGKTVMEW 339 (341)
T ss_pred HHHhCCcccCChHHHhccccccccHHHHHHHHHHHhhcCcceEEEEe
Confidence 99999 346788899999985 556666655554457999874
No 40
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.97 E-value=2.2e-30 Score=219.78 Aligned_cols=244 Identities=17% Similarity=0.169 Sum_probs=195.2
Q ss_pred cccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEc----CCCCCcccc-cccccchhhhHHHHHHhcCCCCCCe
Q 024295 13 NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKV----DPSIDPSDA-SFLSCGFTTGYGAAWKEAKVEKGSS 87 (269)
Q Consensus 13 ~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~v----p~~~~~~~a-a~~~~~~~~a~~~l~~~~~~~~~~~ 87 (269)
.|+|-.....+.+ ||+|+++ ++|++|+.++.+.+.++ |++++++++ ++++++++|||+++.+.++++++++
T Consensus 66 ~g~v~~~~~~~~~-GdrV~~~---~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~ 141 (325)
T TIGR02825 66 ARVVESKNVALPK-GTIVLAS---PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGET 141 (325)
T ss_pred EEEEEeCCCCCCC-CCEEEEe---cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCE
Confidence 4555555567888 9999975 46999999999988887 899999887 6788899999999888899999999
Q ss_pred EEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295 88 VAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV 166 (269)
Q Consensus 88 vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~ 166 (269)
|||+|+ |++|++++|+||..|+ +|+++++++++.+.++++|+++++++++ .+++.+.++..++ .++|++||++|+
T Consensus 142 VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~--~~~~~~~~~~~~~-~gvdvv~d~~G~ 217 (325)
T TIGR02825 142 VMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKT--VKSLEETLKKASP-DGYDCYFDNVGG 217 (325)
T ss_pred EEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccc--cccHHHHHHHhCC-CCeEEEEECCCH
Confidence 999985 9999999999999999 8999999999999999999999999875 1256666666554 489999999998
Q ss_pred hhHHHHHHHHcccCCcEEEEEccCCCc----ccc--chhHhhhhCCceEEeeeccCCCC---CCcHHHHHHHHHCCCCCC
Q 024295 167 PSLLSEALETTKVGKGKVIVIGVGVDA----MVP--LNVIALACGGRTLKGTTFGGIKT---KSDLPTLLDKCKNKEFKL 237 (269)
Q Consensus 167 ~~~~~~~~~~l~~~~G~~v~~g~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~ 237 (269)
+ .+..++++++++ |+++.+|..... ..+ .....+.++++++.++....+.. .+.++++++++.+|++++
T Consensus 218 ~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~ 295 (325)
T TIGR02825 218 E-FSNTVIGQMKKF-GRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQY 295 (325)
T ss_pred H-HHHHHHHHhCcC-cEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCccc
Confidence 6 679999999996 999999865320 111 12334555788888775432211 245788999999999876
Q ss_pred CcceeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295 238 HQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT 268 (269)
Q Consensus 238 ~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~ 268 (269)
. +..+|+++++++|++.++++.. +|+|+.
T Consensus 296 ~--~~~~~~l~~~~~A~~~~~~~~~~gkvVv~ 325 (325)
T TIGR02825 296 K--EYVIEGFENMPAAFMGMLKGENLGKTIVK 325 (325)
T ss_pred c--eeccccHHHHHHHHHHHhcCCCCCeEEeC
Confidence 5 4457899999999999988765 588863
No 41
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=219.34 Aligned_cols=239 Identities=25% Similarity=0.343 Sum_probs=183.5
Q ss_pred eeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhc------CCCCCCeEEEEcC-
Q 024295 21 SRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEA------KVEKGSSVAVLGL- 93 (269)
Q Consensus 21 ~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~------~~~~~~~vlI~G~- 93 (269)
..+.. |+.+......|+|+||+++|+..++++|++++++++|.++.++.|||.++.... +++++++|||+|+
T Consensus 89 ~~~~~-g~~~~~~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggs 167 (347)
T KOG1198|consen 89 GGWVH-GDAVVAFLSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGS 167 (347)
T ss_pred cceEe-eeEEeeccCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCC
Confidence 33444 666666677799999999999999999999999999999999999999999999 8999999999975
Q ss_pred ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHH
Q 024295 94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA 173 (269)
Q Consensus 94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~ 173 (269)
|++|++++|+|+..++ ..++++.++++.++++++|+++++|+++ .++.+.+.+.+ +.+||+||||+|++ .....
T Consensus 168 ggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy~~---~~~~e~~kk~~-~~~~DvVlD~vg~~-~~~~~ 241 (347)
T KOG1198|consen 168 GGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDYKD---ENVVELIKKYT-GKGVDVVLDCVGGS-TLTKS 241 (347)
T ss_pred cHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecCCC---HHHHHHHHhhc-CCCccEEEECCCCC-ccccc
Confidence 8999999999999996 4444555899999999999999999998 99999999988 55999999999987 56777
Q ss_pred HHHcccCCcEEEEEccCCCccccchhH-------hhhhCCceEEeeeccC---CCCCCcHHHHHHHHHCCCCCCCcceeE
Q 024295 174 LETTKVGKGKVIVIGVGVDAMVPLNVI-------ALACGGRTLKGTTFGG---IKTKSDLPTLLDKCKNKEFKLHQLLTH 243 (269)
Q Consensus 174 ~~~l~~~~G~~v~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~g~~~~~~~~~~ 243 (269)
..++..+ |+...++.........+.. ........+.+..+.. ....+.++.+.+++++++ +.+.+.+
T Consensus 242 ~~~l~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ie~gk--ikp~i~~ 318 (347)
T KOG1198|consen 242 LSCLLKG-GGGAYIGLVGDELANYKLDDLWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLKALVELIEKGK--IKPVIDS 318 (347)
T ss_pred hhhhccC-CceEEEEeccccccccccccchhhhhhhhheeeeeeccceeeeeecCCHHHHHHHHHHHHcCc--ccCCcce
Confidence 7788774 6544444333211111111 0000111111111110 123467889999999997 5556889
Q ss_pred EeehhhHHHHHHHhcCCC-eeeEEeeC
Q 024295 244 HVKLEEIDKAIQLLKQPD-CVKVLITI 269 (269)
Q Consensus 244 ~~~~~~~~~a~~~~~~~~-~~k~vl~~ 269 (269)
+||++++.+||+.+.++. .+|+++.+
T Consensus 319 ~~p~~~~~ea~~~~~~~~~~GK~vl~~ 345 (347)
T KOG1198|consen 319 VYPFSQAKEAFEKLEKSHATGKVVLEK 345 (347)
T ss_pred eeeHHHHHHHHHHHhhcCCcceEEEEe
Confidence 999999999999887754 47988864
No 42
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.97 E-value=8.1e-30 Score=216.07 Aligned_cols=244 Identities=19% Similarity=0.203 Sum_probs=205.1
Q ss_pred cccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-
Q 024295 15 LMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL- 93 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~- 93 (269)
.+|+++.++++ ||+|++....|+|++|+++++..++++|+++++++++.+++.+++|++++ ..++++++++|||+|+
T Consensus 72 ~~G~~v~~~~~-Gd~V~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~ 149 (324)
T cd08292 72 AVGEGVKGLQV-GQRVAVAPVHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAG 149 (324)
T ss_pred EeCCCCCCCCC-CCEEEeccCCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccc
Confidence 35778888898 99999876568999999999999999999999999999988899999986 5588999999999986
Q ss_pred ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHH
Q 024295 94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA 173 (269)
Q Consensus 94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~ 173 (269)
|.+|++++|+|+.+|+ +++++..++++.+.++++|+++++++.+ .++.+.+.+.+++.++|++||++|++ ....+
T Consensus 150 g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~~d~v~d~~g~~-~~~~~ 224 (324)
T cd08292 150 GAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIGPVVSTEQ---PGWQDKVREAAGGAPISVALDSVGGK-LAGEL 224 (324)
T ss_pred cHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCCEEEcCCC---chHHHHHHHHhCCCCCcEEEECCCCh-hHHHH
Confidence 9999999999999999 8888888888888888899999998876 78888899988888999999999986 67899
Q ss_pred HHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC-------CCcHHHHHHHHHCCCCCCCcceeEEee
Q 024295 174 LETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT-------KSDLPTLLDKCKNKEFKLHQLLTHHVK 246 (269)
Q Consensus 174 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~g~~~~~~~~~~~~~ 246 (269)
+++++++ |+++.+|.......+++....+.++.++.++....+.. .+.+..+++++.++.+++. +.++|+
T Consensus 225 ~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~ 301 (324)
T cd08292 225 LSLLGEG-GTLVSFGSMSGEPMQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLP--VEAVFD 301 (324)
T ss_pred HHhhcCC-cEEEEEecCCCCCCcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCc--cccEec
Confidence 9999996 99999987543334455555666999999887543211 2357889999999997754 467899
Q ss_pred hhhHHHHHHHhcCCCe-eeEEee
Q 024295 247 LEEIDKAIQLLKQPDC-VKVLIT 268 (269)
Q Consensus 247 ~~~~~~a~~~~~~~~~-~k~vl~ 268 (269)
++++.++++.+.++.. +|++++
T Consensus 302 ~~~~~~a~~~~~~~~~~~kvvv~ 324 (324)
T cd08292 302 LGDAAKAAAASMRPGRAGKVLLR 324 (324)
T ss_pred HHHHHHHHHHHHcCCCCceEEeC
Confidence 9999999998876654 588764
No 43
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.97 E-value=2.6e-29 Score=216.21 Aligned_cols=228 Identities=36% Similarity=0.628 Sum_probs=195.8
Q ss_pred cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295 36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI 115 (269)
Q Consensus 36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~ 115 (269)
.|+|++|++++++.++++|+++++++++++++.+.+||+++....+++++++|||+|+|++|++++++++..|+++|+++
T Consensus 134 ~g~~~~~~~~~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~ 213 (363)
T cd08279 134 LGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAV 213 (363)
T ss_pred CccceeeEEeccccEEECCCCCChHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEE
Confidence 58999999999999999999999999999999999999998888999999999999889999999999999999559999
Q ss_pred cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-cc
Q 024295 116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AM 194 (269)
Q Consensus 116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~ 194 (269)
++++++.+.++++|++++++.+. .++...+++++++.++|+++|+++.......++++++++ |+++.+|.... ..
T Consensus 214 ~~~~~~~~~~~~~g~~~vv~~~~---~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~ 289 (363)
T cd08279 214 DPVPEKLELARRFGATHTVNASE---DDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPGET 289 (363)
T ss_pred cCCHHHHHHHHHhCCeEEeCCCC---ccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcC-CeEEEEecCCCCcc
Confidence 99999999999999999998876 678888888876668999999999666889999999996 99999986542 34
Q ss_pred ccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEe
Q 024295 195 VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267 (269)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl 267 (269)
..++...+..++..+.++.++....++.++++++++.++++++.+.+.+++++++++++|+.+.++...|.||
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 362 (363)
T cd08279 290 VSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI 362 (363)
T ss_pred cccCHHHHhhcCcEEEEEEecCcCcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence 4566666666788888876544334567899999999999876555778899999999999998877766665
No 44
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.97 E-value=8.1e-30 Score=216.56 Aligned_cols=244 Identities=20% Similarity=0.199 Sum_probs=197.0
Q ss_pred cccccCCceeeeecCeEEeeeeccCcccceEeeccC---ceEEcCCCCC--c---ccccccccchhhhHHHHHHhcCCCC
Q 024295 13 NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDAN---YVVKVDPSID--P---SDASFLSCGFTTGYGAAWKEAKVEK 84 (269)
Q Consensus 13 ~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~---~~~~vp~~~~--~---~~aa~~~~~~~~a~~~l~~~~~~~~ 84 (269)
.|+|-.++.++.+ ||+|++. ++|++|++++.+ .++++|++++ + ..++.++++++|||+++.+.+++++
T Consensus 68 ~G~V~~~~~~~~~-Gd~V~~~---~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~ 143 (329)
T cd08294 68 AKVIESKNSKFPV-GTIVVAS---FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKA 143 (329)
T ss_pred EEEEecCCCCCCC-CCEEEee---CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCC
Confidence 4555556667888 9999874 579999999999 9999999988 2 2234577899999999988899999
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295 85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC 163 (269)
Q Consensus 85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 163 (269)
+++|||+|+ |++|++++|+|+..|+ +|+++++++++.+.++++|+++++++++ .++.+.+++.++ .++|++||+
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~~Ga~~vi~~~~---~~~~~~v~~~~~-~gvd~vld~ 218 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKELGFDAVFNYKT---VSLEEALKEAAP-DGIDCYFDN 218 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC---ccHHHHHHHHCC-CCcEEEEEC
Confidence 999999985 9999999999999999 8999999999999999999999999887 788888888776 489999999
Q ss_pred cCChhHHHHHHHHcccCCcEEEEEccCCC-cc-----ccchhHhhhhCCceEEeeeccCCC--CCCcHHHHHHHHHCCCC
Q 024295 164 TGVPSLLSEALETTKVGKGKVIVIGVGVD-AM-----VPLNVIALACGGRTLKGTTFGGIK--TKSDLPTLLDKCKNKEF 235 (269)
Q Consensus 164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~ 235 (269)
+|++ .+..++++++++ |+++.+|.... .. .......+..+++++.++....+. ..+.++++++++.++++
T Consensus 219 ~g~~-~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i 296 (329)
T cd08294 219 VGGE-FSSTVLSHMNDF-GRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKL 296 (329)
T ss_pred CCHH-HHHHHHHhhccC-CEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCC
Confidence 9985 789999999996 99999985422 11 122233455688888887643321 12346788999999997
Q ss_pred CCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 236 KLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 236 ~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++. ...+++++++++|++.++++.. +|+|+++
T Consensus 297 ~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvvv~~ 329 (329)
T cd08294 297 KYR--EHVTEGFENMPQAFIGMLKGENTGKAIVKV 329 (329)
T ss_pred cCC--cccccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 765 3356899999999999988766 6999874
No 45
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.97 E-value=3.1e-29 Score=214.45 Aligned_cols=244 Identities=28% Similarity=0.388 Sum_probs=206.7
Q ss_pred ccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccC--ceEEcCCCCCccccccc
Q 024295 16 MLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDAN--YVVKVDPSIDPSDASFL 65 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~--~~~~vp~~~~~~~aa~~ 65 (269)
+|+++..+++ ||+|+... .+|+|++|+.++++ .++++|++++.++++.+
T Consensus 69 ~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l 147 (345)
T cd08286 69 VGSAVTNFKV-GDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVML 147 (345)
T ss_pred eccCccccCC-CCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhc
Confidence 5778778888 99997642 13889999999987 89999999999999999
Q ss_pred ccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHH
Q 024295 66 SCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS 145 (269)
Q Consensus 66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~ 145 (269)
++.+++||+++....++++++++||+|+|++|.+++|+++..|..+|+++++++++.+.++++|++.++++.+ .++.
T Consensus 148 ~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~---~~~~ 224 (345)
T cd08286 148 SDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAK---GDAI 224 (345)
T ss_pred cchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceecccc---ccHH
Confidence 9999999998777889999999999999999999999999999448999988889999999999999999876 6787
Q ss_pred HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHH
Q 024295 146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPT 225 (269)
Q Consensus 146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (269)
+.+.++.++.++|++||++|.+..+..+++.++++ |+++.+|.... ..++++..++.+++++.+.... .+.+..
T Consensus 225 ~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 298 (345)
T cd08286 225 EQVLELTDGRGVDVVIEAVGIPATFELCQELVAPG-GHIANVGVHGK-PVDLHLEKLWIKNITITTGLVD----TNTTPM 298 (345)
T ss_pred HHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-cEEEEecccCC-CCCcCHHHHhhcCcEEEeecCc----hhhHHH
Confidence 88888877778999999998777888999999996 99999996543 4556666656689999875432 246888
Q ss_pred HHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCC---CeeeEEeeC
Q 024295 226 LLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP---DCVKVLITI 269 (269)
Q Consensus 226 ~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~k~vl~~ 269 (269)
++++++++.+++.+++++++++++++++++.+... ...|++|++
T Consensus 299 ~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~ 345 (345)
T cd08286 299 LLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF 345 (345)
T ss_pred HHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence 99999999987766678899999999999998875 346999975
No 46
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.97 E-value=1.6e-29 Score=216.24 Aligned_cols=244 Identities=20% Similarity=0.241 Sum_probs=189.3
Q ss_pred cccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCccc----ccccccchhhhHHHHHHhcCCCCC--CeE
Q 024295 15 LMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD----ASFLSCGFTTGYGAAWKEAKVEKG--SSV 88 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~----aa~~~~~~~~a~~~l~~~~~~~~~--~~v 88 (269)
.+|+++.++++ ||+|+++. ++|+||++++++.++++|+++++.+ ++.++.+++|||+++.+.++++++ ++|
T Consensus 82 ~vG~~v~~~~~-Gd~V~~~~--~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~V 158 (345)
T cd08293 82 VEESKHQKFAV-GDIVTSFN--WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTM 158 (345)
T ss_pred EeccCCCCCCC-CCEEEecC--CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEE
Confidence 35788888999 99998753 6799999999999999999865433 445677899999998888888877 999
Q ss_pred EEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295 89 AVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV 166 (269)
Q Consensus 89 lI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~ 166 (269)
||+|+ |++|++++|+|+..|+++|+++++++++.+.+++ +|+++++++.+ .++.+.++++++ .++|++||++|+
T Consensus 159 lI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~---~~~~~~i~~~~~-~gvd~vid~~g~ 234 (345)
T cd08293 159 VVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT---DNVAERLRELCP-EGVDVYFDNVGG 234 (345)
T ss_pred EEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC---CCHHHHHHHHCC-CCceEEEECCCc
Confidence 99986 9999999999999998679999999999999876 99999999886 788888888876 499999999998
Q ss_pred hhHHHHHHHHcccCCcEEEEEccCCC--cc----ccch--hHhhh-hCCceEEeeeccCCCC--CCcHHHHHHHHHCCCC
Q 024295 167 PSLLSEALETTKVGKGKVIVIGVGVD--AM----VPLN--VIALA-CGGRTLKGTTFGGIKT--KSDLPTLLDKCKNKEF 235 (269)
Q Consensus 167 ~~~~~~~~~~l~~~~G~~v~~g~~~~--~~----~~~~--~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~ 235 (269)
. .+..++++++++ |+++.+|.... .. ..+. ...+. .+++++.......... .+.++++++++.++++
T Consensus 235 ~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i 312 (345)
T cd08293 235 E-ISDTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGKL 312 (345)
T ss_pred H-HHHHHHHHhccC-CEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHHHHHHHCCCc
Confidence 6 679999999996 99999985321 11 1111 11122 2344443332211111 1346778889999997
Q ss_pred CCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 236 KLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 236 ~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++. +...++++++++||+.+.++.. +|+|+++
T Consensus 313 ~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~ 345 (345)
T cd08293 313 KVK--ETVYEGLENAGEAFQSMMNGGNIGKQIVKV 345 (345)
T ss_pred cce--eEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence 754 4445799999999999988765 6999875
No 47
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.97 E-value=5.2e-29 Score=214.73 Aligned_cols=227 Identities=30% Similarity=0.470 Sum_probs=193.9
Q ss_pred cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295 36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI 115 (269)
Q Consensus 36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~ 115 (269)
.|+|++|+.++.+.++++|+++++.+++.+++++++||+++.....++++++|||+|+|++|++++++|+..|+++++++
T Consensus 139 ~g~~~~~~~~~~~~~~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~ 218 (367)
T cd08263 139 MGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAV 218 (367)
T ss_pred CCcceeEEEechhhEEECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEE
Confidence 58999999999999999999999999999999999999998888888999999999889999999999999999559999
Q ss_pred cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-cc
Q 024295 116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AM 194 (269)
Q Consensus 116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~ 194 (269)
+.++++.+.++++|++.++++++ .++.+.+++..++.++|++||++++......++++++++ |+++.+|.... ..
T Consensus 219 ~~s~~~~~~~~~~g~~~v~~~~~---~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~ 294 (367)
T cd08263 219 DVRDEKLAKAKELGATHTVNAAK---EDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGAT 294 (367)
T ss_pred eCCHHHHHHHHHhCCceEecCCc---ccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcC-CEEEEEccCCCCCc
Confidence 88899999999999999999876 778888888877678999999999865778999999996 99999986543 23
Q ss_pred ccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295 195 VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT 268 (269)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~ 268 (269)
..++...++.++.++.++... ..++.++.+++++.++++++.+.++++++++++.++++.++++.. +|+|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 367 (367)
T cd08263 295 AEIPITRLVRRGIKIIGSYGA--RPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE 367 (367)
T ss_pred cccCHHHHhhCCeEEEecCCC--CcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence 455666665688888875322 123578899999999998765557788999999999999988775 588874
No 48
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.97 E-value=5.2e-29 Score=212.04 Aligned_cols=236 Identities=20% Similarity=0.344 Sum_probs=200.3
Q ss_pred ccCCceeeeecCeEEee----------------------------eeccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295 16 MLDSTSRMSVRGQKLYH----------------------------IFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC 67 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~----------------------------~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~ 67 (269)
+|+++.++++ ||+|+. +...|+++||+.++.+.++++|+++++++++.+++
T Consensus 69 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~ 147 (333)
T cd08296 69 VGEGVSRWKV-GDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLC 147 (333)
T ss_pred ECCCCccCCC-CCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhh
Confidence 5777778888 999975 22258999999999999999999999999999999
Q ss_pred chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295 68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL 147 (269)
Q Consensus 68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~ 147 (269)
++.+||+++.. .+++++++|||+|+|++|++++++|+.+|+ +|+++++++++.+.++++|+++++++.+ .++.+.
T Consensus 148 ~~~ta~~~~~~-~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~ 222 (333)
T cd08296 148 AGVTTFNALRN-SGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTSK---EDVAEA 222 (333)
T ss_pred hhHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecCCC---ccHHHH
Confidence 99999998754 589999999999999999999999999999 8999999999999999999999998876 667777
Q ss_pred HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHH
Q 024295 148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLL 227 (269)
Q Consensus 148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (269)
++++ + ++|+++|++|.+..+..++++++++ |+++.+|... ...+++...++.+++++.++.... .+++..++
T Consensus 223 ~~~~--~-~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 294 (333)
T cd08296 223 LQEL--G-GAKLILATAPNAKAISALVGGLAPR-GKLLILGAAG-EPVAVSPLQLIMGRKSIHGWPSGT---ALDSEDTL 294 (333)
T ss_pred HHhc--C-CCCEEEECCCchHHHHHHHHHcccC-CEEEEEecCC-CCCCcCHHHHhhcccEEEEeCcCC---HHHHHHHH
Confidence 7765 2 7999999998666889999999996 9999999765 345666666777999999986432 35688899
Q ss_pred HHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295 228 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT 268 (269)
Q Consensus 228 ~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~ 268 (269)
+++.+++++ +.+ ++++++++.+||+.++++.. +|+|++
T Consensus 295 ~~~~~~~l~--~~v-~~~~~~~~~~a~~~~~~~~~~gk~v~~ 333 (333)
T cd08296 295 KFSALHGVR--PMV-ETFPLEKANEAYDRMMSGKARFRVVLT 333 (333)
T ss_pred HHHHhCCCC--ceE-EEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence 999888754 344 57999999999999988776 699874
No 49
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.97 E-value=3.6e-29 Score=217.57 Aligned_cols=244 Identities=17% Similarity=0.219 Sum_probs=201.9
Q ss_pred cccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295 15 LMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS 66 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~ 66 (269)
.+|+++..+.+ ||+|+... ..|+|++|++++...++++|+++++++++.++
T Consensus 95 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~aa~l~ 173 (393)
T cd08246 95 AVGEGVKNWKV-GDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAYM 173 (393)
T ss_pred EeCCCCCcCCC-CCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHHHhhhc
Confidence 35778888888 99998653 24899999999999999999999999999999
Q ss_pred cchhhhHHHHHHh--cCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC---
Q 024295 67 CGFTTGYGAAWKE--AKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP--- 140 (269)
Q Consensus 67 ~~~~~a~~~l~~~--~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~--- 140 (269)
+++++||+++... ++++++++|+|+|+ |++|++++++++.+|+ +++++++++++.+.++++|+++++++++.+
T Consensus 174 ~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~ 252 (393)
T cd08246 174 LVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVSSEEKAEYCRALGAEGVINRRDFDHWG 252 (393)
T ss_pred ccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCCEEEccccccccc
Confidence 9999999998654 78899999999996 9999999999999999 788888899999999999999999875310
Q ss_pred ----------------CccHHHHHHhhhCCC-CccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh
Q 024295 141 ----------------NKSISELVKGITHGM-GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA 203 (269)
Q Consensus 141 ----------------~~~~~~~i~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~ 203 (269)
...+.+.+.+++++. ++|++||++|+. .+..++++++++ |+++.+|.......+++...+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~l~ 330 (393)
T cd08246 253 VLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRA-TFPTSVFVCDRG-GMVVICAGTTGYNHTYDNRYLW 330 (393)
T ss_pred ccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchH-hHHHHHHHhccC-CEEEEEcccCCCCCCCcHHHHh
Confidence 013567788888877 899999999874 788999999996 9999998654323445556666
Q ss_pred hCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCC-Ce-eeEEe
Q 024295 204 CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP-DC-VKVLI 267 (269)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~-~k~vl 267 (269)
.++.++.+++..+ .+.+.+++++++++.+. +.++++|++++++++++.+.++ .. +|+++
T Consensus 331 ~~~~~i~g~~~~~---~~~~~~~~~~~~~~~l~--~~~~~~~~l~~~~~a~~~~~~~~~~~gkvvv 391 (393)
T cd08246 331 MRQKRIQGSHFAN---DREAAEANRLVMKGRID--PCLSKVFSLDETPDAHQLMHRNQHHVGNMAV 391 (393)
T ss_pred hheeEEEecccCc---HHHHHHHHHHHHcCCce--eeeeEEEeHHHHHHHHHHHHhCccccceEEE
Confidence 6888888876543 35788999999999865 3477899999999999999877 55 58775
No 50
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.97 E-value=2.1e-29 Score=200.32 Aligned_cols=240 Identities=20% Similarity=0.238 Sum_probs=198.9
Q ss_pred cCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcc--cccccccchhhhHHHHHHhcCCCCCCeEEEEcC-
Q 024295 17 LDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS--DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL- 93 (269)
Q Consensus 17 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~--~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~- 93 (269)
.+....|++ ||.|.+.. +|+||..++.+.+.|++++.-.- ....+.++..|||.+|.+.++.++|++|+|.++
T Consensus 85 ~S~~~~f~~-GD~V~~~~---GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAa 160 (340)
T COG2130 85 ASNHPGFQP-GDIVVGVS---GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAA 160 (340)
T ss_pred ecCCCCCCC-CCEEEecc---cceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecc
Confidence 456677999 99998764 69999999999999998543222 223367899999999999999999999999986
Q ss_pred ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHH
Q 024295 94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE 172 (269)
Q Consensus 94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~ 172 (269)
|++|..+.|+||..|+ +|++++.++||.+++++ +|.|.++|++. +++.+.+.+.+++ ++|+.||++|++ .++.
T Consensus 161 GaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~---~d~~~~L~~a~P~-GIDvyfeNVGg~-v~DA 234 (340)
T COG2130 161 GAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKA---EDFAQALKEACPK-GIDVYFENVGGE-VLDA 234 (340)
T ss_pred cccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCc---ccHHHHHHHHCCC-CeEEEEEcCCch-HHHH
Confidence 9999999999999999 99999999999999988 99999999998 8999999999997 999999999998 8899
Q ss_pred HHHHcccCCcEEEEEccCCC---ccccc---hhHhhhhCCceEEeeec-cCCCC--CCcHHHHHHHHHCCCCCCCcceeE
Q 024295 173 ALETTKVGKGKVIVIGVGVD---AMVPL---NVIALACGGRTLKGTTF-GGIKT--KSDLPTLLDKCKNKEFKLHQLLTH 243 (269)
Q Consensus 173 ~~~~l~~~~G~~v~~g~~~~---~~~~~---~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~l~~~g~~~~~~~~~~ 243 (269)
.+..++. ++|++.+|..+. ...+. ....++.+.+++.|+-. ..+.. .+..+++.+|+++|+++.+. +.
T Consensus 235 v~~~ln~-~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~e--ti 311 (340)
T COG2130 235 VLPLLNL-FARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRE--TI 311 (340)
T ss_pred HHHhhcc-ccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEe--ee
Confidence 9999999 499999996554 11221 22334557888888876 33321 14577899999999988874 44
Q ss_pred EeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 244 HVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 244 ~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
+-.+|++++||.-|.+++. +|.|+++
T Consensus 312 ~dGlEnaP~Af~gLl~G~N~GK~vvKv 338 (340)
T COG2130 312 VDGLENAPEAFIGLLSGKNFGKLVVKV 338 (340)
T ss_pred hhhhhccHHHHHHHhcCCccceEEEEe
Confidence 5679999999998888776 6999874
No 51
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.97 E-value=7.1e-29 Score=211.75 Aligned_cols=241 Identities=22% Similarity=0.337 Sum_probs=202.8
Q ss_pred ccccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295 14 GLMLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS 66 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~ 66 (269)
-.+|.++..+.+ ||+|++.. .+|+|++|+.+++++++++|+++++++++.++
T Consensus 70 ~~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~ 148 (340)
T cd05284 70 EEVGSGVDGLKE-GDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLA 148 (340)
T ss_pred EEeCCCCCcCcC-CCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhhhhc
Confidence 335778888999 99998653 25899999999999999999999999999999
Q ss_pred cchhhhHHHHHHh-cCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccH
Q 024295 67 CGFTTGYGAAWKE-AKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSI 144 (269)
Q Consensus 67 ~~~~~a~~~l~~~-~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~ 144 (269)
+.+.|||+++... ..+.++++|||+|+|++|++++++|+..| . +|+++++++++.+.++++|+++++++++ . +
T Consensus 149 ~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~-~ 223 (340)
T cd05284 149 DAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKLAERLGADHVLNASD---D-V 223 (340)
T ss_pred chHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHhCCcEEEcCCc---c-H
Confidence 9999999998765 46888999999998889999999999999 6 8999998999999999999999998876 5 8
Q ss_pred HHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHH
Q 024295 145 SELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLP 224 (269)
Q Consensus 145 ~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (269)
.+++++++++.++|+++|++|++.....++++++++ |+++.+|.... .+++....+.+++++.++... .++.+.
T Consensus 224 ~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 297 (340)
T cd05284 224 VEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGYGGH--GRLPTSDLVPTEISVIGSLWG---TRAELV 297 (340)
T ss_pred HHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEEcCCCC--CccCHHHhhhcceEEEEEecc---cHHHHH
Confidence 888888877778999999999766889999999996 99999986542 344444445689999887643 236788
Q ss_pred HHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 225 TLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 225 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
.+++++.++.+++ ..++|++++++++++.++++.. +|+++.+
T Consensus 298 ~~~~~l~~g~l~~---~~~~~~~~~~~~a~~~~~~~~~~gkvv~~~ 340 (340)
T cd05284 298 EVVALAESGKVKV---EITKFPLEDANEALDRLREGRVTGRAVLVP 340 (340)
T ss_pred HHHHHHHhCCCCc---ceEEEeHHHHHHHHHHHHcCCccceEEecC
Confidence 9999999998764 3457999999999999988766 5888764
No 52
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.97 E-value=1.7e-28 Score=212.62 Aligned_cols=226 Identities=29% Similarity=0.430 Sum_probs=189.6
Q ss_pred cCcccceEeeccC--ceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEE
Q 024295 36 CSTWSEYMVIDAN--YVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKII 113 (269)
Q Consensus 36 ~g~~a~~~~v~~~--~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~ 113 (269)
+|+|++|++++++ .++++|+++++++++.+++.+++||+++ ..++++++++|||+|+|++|++++++|+..|+.+|+
T Consensus 135 ~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi 213 (386)
T cd08283 135 AGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVI 213 (386)
T ss_pred CCeeEEEEEcccccCeEEECCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 4899999999987 8999999999999999999999999998 788999999999999999999999999999985699
Q ss_pred EEcCCcchHHHHHhCCCceeeCCCCCCCc-cHHHHHHhhhCCCCccEEEEccCCh---------------------hHHH
Q 024295 114 GIDKNPWKKEKGKAFGMTDFINPDDEPNK-SISELVKGITHGMGVDYCFECTGVP---------------------SLLS 171 (269)
Q Consensus 114 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~-~~~~~i~~~~~~~~~d~v~d~~g~~---------------------~~~~ 171 (269)
++++++++.+.+++++...++++.+ . ++.+.+++++++.++|++||++|+. ..+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~vi~~~~---~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (386)
T cd08283 214 AIDRVPERLEMARSHLGAETINFEE---VDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALR 290 (386)
T ss_pred EEcCCHHHHHHHHHcCCcEEEcCCc---chHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHH
Confidence 9999999999999985446777765 5 4888888888777899999999752 3678
Q ss_pred HHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHH
Q 024295 172 EALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEID 251 (269)
Q Consensus 172 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 251 (269)
.++++++++ |+++.+|........++....+.++.++.+.... ..+.+.++++++.++++...++++++++++++.
T Consensus 291 ~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~ 366 (386)
T cd08283 291 EAIQAVRKG-GTVSIIGVYGGTVNKFPIGAAMNKGLTLRMGQTH---VQRYLPRLLELIESGELDPSFIITHRLPLEDAP 366 (386)
T ss_pred HHHHHhccC-CEEEEEcCCCCCcCccCHHHHHhCCcEEEeccCC---chHHHHHHHHHHHcCCCChhHceEEEecHHHHH
Confidence 899999996 9999998765323345554556688988887532 236788999999999987766677889999999
Q ss_pred HHHHHhcCCC-e-eeEEeeC
Q 024295 252 KAIQLLKQPD-C-VKVLITI 269 (269)
Q Consensus 252 ~a~~~~~~~~-~-~k~vl~~ 269 (269)
++|+.+.++. . +|++|++
T Consensus 367 ~a~~~~~~~~~~~~k~~~~~ 386 (386)
T cd08283 367 EAYKIFDKKEDGCIKVVLKP 386 (386)
T ss_pred HHHHHHHhCCCCeEEEEecC
Confidence 9999988765 3 6999874
No 53
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.97 E-value=3.4e-28 Score=207.36 Aligned_cols=241 Identities=26% Similarity=0.460 Sum_probs=202.0
Q ss_pred ccCCceeeeecCeEEeee---------------------------eccCcccceEeeccCceEEcCCCCCcccccccccc
Q 024295 16 MLDSTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCG 68 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~ 68 (269)
+|+++..+++ ||+|++. ...|+|++|+.++++ ++++|+++++++++++ ..
T Consensus 68 ~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~ 144 (337)
T cd08261 68 VGEGVAGLKV-GDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EP 144 (337)
T ss_pred eCCCCCCCCC-CCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-ch
Confidence 5677777888 9999862 235899999999999 9999999999999877 57
Q ss_pred hhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHH
Q 024295 69 FTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELV 148 (269)
Q Consensus 69 ~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i 148 (269)
++++++++ ...+++++++|||+|+|.+|.+++|+|+.+|+ +|+++.+++++.+.++++|+++++++.+ .++.+.+
T Consensus 145 ~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~~---~~~~~~l 219 (337)
T cd08261 145 LAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGD---EDVAARL 219 (337)
T ss_pred HHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCcc---cCHHHHH
Confidence 88888876 77899999999999889999999999999999 8999988999999999999999999886 6788888
Q ss_pred HhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHH
Q 024295 149 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLD 228 (269)
Q Consensus 149 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (269)
.+.+++.++|+++|++|+...+..++++++++ |+++.+|.... ...++...+..+++++.+... ...+.++++++
T Consensus 220 ~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~i~~g~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 294 (337)
T cd08261 220 RELTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVGLSKG-PVTFPDPEFHKKELTILGSRN---ATREDFPDVID 294 (337)
T ss_pred HHHhCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEcCCCC-CCccCHHHHHhCCCEEEEecc---CChhhHHHHHH
Confidence 88877768999999998766889999999996 99999986552 334455556667888877632 23457889999
Q ss_pred HHHCCCCCCCcceeEEeehhhHHHHHHHhcCCC-e-eeEEeeC
Q 024295 229 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD-C-VKVLITI 269 (269)
Q Consensus 229 l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~-~k~vl~~ 269 (269)
++.++.+++.+.+..+++++++.++++.+.+++ . .|+|++|
T Consensus 295 l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~ 337 (337)
T cd08261 295 LLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF 337 (337)
T ss_pred HHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 999999876334677899999999999998873 4 6999876
No 54
>PRK10083 putative oxidoreductase; Provisional
Probab=99.97 E-value=2.3e-28 Score=208.48 Aligned_cols=241 Identities=17% Similarity=0.269 Sum_probs=195.3
Q ss_pred cccCCceeeeecCeEEe---------------------------eeeccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295 15 LMLDSTSRMSVRGQKLY---------------------------HIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC 67 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~---------------------------~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~ 67 (269)
.+|+++..+++ ||+|+ ++..+|+|+||+.++.+.++++|+++++++++ +..
T Consensus 67 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~ 144 (339)
T PRK10083 67 AVGEGVDAARI-GERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVE 144 (339)
T ss_pred EECCCCccCCC-CCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hhc
Confidence 35778888888 99997 33335899999999999999999999998876 446
Q ss_pred chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHH-cCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH
Q 024295 68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARM-HGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE 146 (269)
Q Consensus 68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~-~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~ 146 (269)
++.++++ +...++++++++|+|+|+|++|++++|+++. +|++.++++++++++.+.++++|+++++++++ .++.+
T Consensus 145 ~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~---~~~~~ 220 (339)
T PRK10083 145 PFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQ---EPLGE 220 (339)
T ss_pred hHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc---ccHHH
Confidence 7888885 5577899999999999999999999999996 69967888999999999999999999998876 66666
Q ss_pred HHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHH
Q 024295 147 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTL 226 (269)
Q Consensus 147 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (269)
.+... +.++|++||++|.+..+..++++++++ |+++.+|.... ...++...+..+++++.+... ..+.++++
T Consensus 221 ~~~~~--g~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 292 (339)
T PRK10083 221 ALEEK--GIKPTLIIDAACHPSILEEAVTLASPA-ARIVLMGFSSE-PSEIVQQGITGKELSIFSSRL----NANKFPVV 292 (339)
T ss_pred HHhcC--CCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC-CceecHHHHhhcceEEEEEec----ChhhHHHH
Confidence 66432 335679999999776889999999996 99999997653 333444444557788777653 23678999
Q ss_pred HHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCC-e-eeEEeeC
Q 024295 227 LDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD-C-VKVLITI 269 (269)
Q Consensus 227 ~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~-~k~vl~~ 269 (269)
++++.++++++.++++++|++++++++++.+.++. . +|+++++
T Consensus 293 ~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~ 337 (339)
T PRK10083 293 IDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTF 337 (339)
T ss_pred HHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEec
Confidence 99999999876555788999999999999987543 3 6999865
No 55
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.97 E-value=2.8e-28 Score=208.90 Aligned_cols=243 Identities=23% Similarity=0.296 Sum_probs=204.0
Q ss_pred cccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295 15 LMLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC 67 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~ 67 (269)
.+|+++.++.+ ||+|+++. ..|++++|+.++.+.++++|+++++++++.+.+
T Consensus 80 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~ 158 (350)
T cd08240 80 AVGPDAADVKV-GDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLAC 158 (350)
T ss_pred eeCCCCCCCCC-CCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHHHeehhhc
Confidence 35778888888 99998651 358999999999999999999999999999999
Q ss_pred chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295 68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL 147 (269)
Q Consensus 68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~ 147 (269)
.+.+||+++.....++++++|||+|+|++|++++|+|+..|+++|+++++++++.+.++++|++.+++.++ ..+.+.
T Consensus 159 ~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~ 235 (350)
T cd08240 159 SGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSD---PDAAKR 235 (350)
T ss_pred hhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCC---ccHHHH
Confidence 99999999877777778999999998999999999999999978999998999999999999988888876 677777
Q ss_pred HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHH
Q 024295 148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLL 227 (269)
Q Consensus 148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (269)
+.+..++ ++|++||++|.+.....++++++++ |+++.+|.... ....+.....+++.++.++.... .+++.+++
T Consensus 236 ~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 309 (350)
T cd08240 236 IIKAAGG-GVDAVIDFVNNSATASLAFDILAKG-GKLVLVGLFGG-EATLPLPLLPLRALTIQGSYVGS---LEELRELV 309 (350)
T ss_pred HHHHhCC-CCcEEEECCCCHHHHHHHHHHhhcC-CeEEEECCCCC-CCcccHHHHhhcCcEEEEcccCC---HHHHHHHH
Confidence 8887777 8999999999766889999999996 99999987653 22333344455888888776443 26788999
Q ss_pred HHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 228 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 228 ~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++++++.++.. ....+++++++++++.+..+.. +|+++++
T Consensus 310 ~ll~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~ 350 (350)
T cd08240 310 ALAKAGKLKPI--PLTERPLSDVNDALDDLKAGKVVGRAVLKP 350 (350)
T ss_pred HHHHcCCCccc--eeeEEcHHHHHHHHHHHHcCCccceEEecC
Confidence 99999987643 5668999999999999887765 6988864
No 56
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.97 E-value=3.4e-28 Score=207.91 Aligned_cols=245 Identities=28% Similarity=0.377 Sum_probs=202.4
Q ss_pred ccccCCceeeeecCeEEeeee-------------------------------ccCcccceEeeccC--ceEEcCCCCCcc
Q 024295 14 GLMLDSTSRMSVRGQKLYHIF-------------------------------SCSTWSEYMVIDAN--YVVKVDPSIDPS 60 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~-------------------------------~~g~~a~~~~v~~~--~~~~vp~~~~~~ 60 (269)
-.+|+++.++++ ||+|++.. .+|+|++|++++++ .++++|++++++
T Consensus 66 ~~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~ 144 (344)
T cd08284 66 VEVGPEVRTLKV-GDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDE 144 (344)
T ss_pred EeeCCCccccCC-CCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHH
Confidence 346778888888 99998643 14889999999865 999999999999
Q ss_pred cccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC
Q 024295 61 DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP 140 (269)
Q Consensus 61 ~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~ 140 (269)
+++.++++++|||+++. ..+++++++|||+|+|++|++++++++.+|+.+|+++++++++.+.++++|+. .++.+.
T Consensus 145 ~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~-- 220 (344)
T cd08284 145 AALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PINFED-- 220 (344)
T ss_pred HhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EEecCC--
Confidence 99999999999999985 47889999999999899999999999999975799998888999999999975 456655
Q ss_pred CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCC
Q 024295 141 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTK 220 (269)
Q Consensus 141 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (269)
.++.+.+.+++++.++|++||+++++......+++++++ |+++.+|..............+.++.++.+... ..+
T Consensus 221 -~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 295 (344)
T cd08284 221 -AEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPG-GVISSVGVHTAEEFPFPGLDAYNKNLTLRFGRC---PVR 295 (344)
T ss_pred -cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccC-CEEEEECcCCCCCccccHHHHhhcCcEEEEecC---Ccc
Confidence 668888888887779999999999766889999999996 999999976532333444455568888875421 234
Q ss_pred CcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295 221 SDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268 (269)
Q Consensus 221 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~ 268 (269)
+.+.++++++.++++++.+++.+++++++++++++.+.++..+|+|++
T Consensus 296 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~Vi~ 343 (344)
T cd08284 296 SLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVLD 343 (344)
T ss_pred hhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCceEEEec
Confidence 679999999999998765557788999999999998887655888875
No 57
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.97 E-value=2.3e-28 Score=209.19 Aligned_cols=245 Identities=31% Similarity=0.429 Sum_probs=201.1
Q ss_pred cccCCceeeeecCeEEeee------------------------------eccCcccceEeeccC--ceEEcCCCCCcccc
Q 024295 15 LMLDSTSRMSVRGQKLYHI------------------------------FSCSTWSEYMVIDAN--YVVKVDPSIDPSDA 62 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~------------------------------~~~g~~a~~~~v~~~--~~~~vp~~~~~~~a 62 (269)
.+|+++.++++ ||+|++. ..+|+|++|++++++ +++++|++++++++
T Consensus 68 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~a 146 (347)
T cd05278 68 EVGSDVKRLKP-GDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDA 146 (347)
T ss_pred EECCCccccCC-CCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHH
Confidence 35788888999 9999862 235899999999987 89999999999999
Q ss_pred cccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCc
Q 024295 63 SFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNK 142 (269)
Q Consensus 63 a~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~ 142 (269)
+.+++++++||+++ ...+++++++|||.|+|++|++++|+|+.+|..+++++++++++.+.++++|++.++++++ .
T Consensus 147 a~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~---~ 222 (347)
T cd05278 147 LMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKN---G 222 (347)
T ss_pred hhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCc---c
Confidence 99999999999997 6788999999999888999999999999999657888888888899999999999998876 6
Q ss_pred cHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCcc-ccchhHhhhhCCceEEeeeccCCCCCC
Q 024295 143 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAM-VPLNVIALACGGRTLKGTTFGGIKTKS 221 (269)
Q Consensus 143 ~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (269)
++.+.+++.+++.++|++||++++...+..++++++++ |+++.+|...... .... ..++.++.++.++.... .+
T Consensus 223 ~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~ 297 (347)
T cd05278 223 DIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPG-GTIANVGVYGKPDPLPLL-GEWFGKNLTFKTGLVPV---RA 297 (347)
T ss_pred hHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcC-CEEEEEcCCCCCcccCcc-chhhhceeEEEeeccCc---hh
Confidence 78888888777668999999998755889999999996 9999998654311 1111 12334778877754322 46
Q ss_pred cHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe--eeEEeeC
Q 024295 222 DLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC--VKVLITI 269 (269)
Q Consensus 222 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~k~vl~~ 269 (269)
.++++++++.++.+++.+.+..++++++++++++.+..+.. .|+|+++
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~ 347 (347)
T cd05278 298 RMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP 347 (347)
T ss_pred HHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence 78899999999998765556778999999999999877654 5888864
No 58
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.97 E-value=3.8e-28 Score=207.32 Aligned_cols=243 Identities=22% Similarity=0.377 Sum_probs=194.6
Q ss_pred cccCCcee-eeecCeEEeeee-----------------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHH
Q 024295 15 LMLDSTSR-MSVRGQKLYHIF-----------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAA 76 (269)
Q Consensus 15 ~vg~~~~~-~~~~Gd~v~~~~-----------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l 76 (269)
.+|+++.+ +++ ||+|+++. ..|+|+||++++.+.++++|+++++++++ ++.++++||++
T Consensus 77 ~vG~~v~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~- 153 (341)
T cd08262 77 DYGPGTERKLKV-GTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHA- 153 (341)
T ss_pred EeCCCCcCCCCC-CCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHH-
Confidence 35677776 888 99999762 35899999999999999999999999887 56688999998
Q ss_pred HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH---HHHhhhC
Q 024295 77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE---LVKGITH 153 (269)
Q Consensus 77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~---~i~~~~~ 153 (269)
...++++++++|||+|+|++|.+++|+++.+|++.++++++++++.+.++++|+++++++++ .+..+ .+....+
T Consensus 154 ~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~~~~~~~~ 230 (341)
T cd08262 154 VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAA---DSPFAAWAAELARAG 230 (341)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCC---cCHHHHHHHHHHHhC
Confidence 47889999999999998999999999999999966888888899999999999998998765 32221 3444455
Q ss_pred CCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCC
Q 024295 154 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK 233 (269)
Q Consensus 154 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 233 (269)
+.++|+++|++|+...+..++++++++ |+++.+|.... ...+.......++.++.++... ..+.+.++++++.++
T Consensus 231 ~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~g 305 (341)
T cd08262 231 GPKPAVIFECVGAPGLIQQIIEGAPPG-GRIVVVGVCME-SDNIEPALAIRKELTLQFSLGY---TPEEFADALDALAEG 305 (341)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCC-CCccCHHHHhhcceEEEEEecc---cHHHHHHHHHHHHcC
Confidence 568999999998755778899999996 99999987643 1222322334477777755422 234788999999999
Q ss_pred CCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295 234 EFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT 268 (269)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~ 268 (269)
.+.+.+++.+++++++++++++.+.++.. +|+|++
T Consensus 306 ~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~ 341 (341)
T cd08262 306 KVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD 341 (341)
T ss_pred CCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence 98866667889999999999999988766 688874
No 59
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.97 E-value=3.9e-28 Score=205.72 Aligned_cols=244 Identities=18% Similarity=0.171 Sum_probs=203.4
Q ss_pred ccCCceeeeecCeEEeeeec--cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC
Q 024295 16 MLDSTSRMSVRGQKLYHIFS--CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL 93 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~~--~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~ 93 (269)
+|+++..+++ ||+|++... .|+|++|+.++.+.++++|+++++++++.+++.+++|| ++...++++++++|+|+|+
T Consensus 74 ~G~~v~~~~~-Gd~V~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~ 151 (324)
T cd08244 74 VGPGVDPAWL-GRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAA 151 (324)
T ss_pred eCCCCCCCCC-CCEEEEccCCCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcC
Confidence 5677777888 999998752 58999999999999999999999999999999999995 5677889999999999985
Q ss_pred -ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHH
Q 024295 94 -GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE 172 (269)
Q Consensus 94 -g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~ 172 (269)
|++|++++++|+.+|+ +|+++++++++.+.++++|++++++..+ .++.+.+.+..++.++|+++|++|++ ....
T Consensus 152 ~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~g~~-~~~~ 226 (324)
T cd08244 152 AGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVAVDYTR---PDWPDQVREALGGGGVTVVLDGVGGA-IGRA 226 (324)
T ss_pred CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEecCC---ccHHHHHHHHcCCCCceEEEECCChH-hHHH
Confidence 9999999999999999 8999999999999999999988888876 77888888877777899999999987 5689
Q ss_pred HHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC---CCcHHHHHHHHHCCCCCCCcceeEEeehhh
Q 024295 173 ALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPTLLDKCKNKEFKLHQLLTHHVKLEE 249 (269)
Q Consensus 173 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 249 (269)
++++++++ |+++.+|.......+++...++.++.++.+........ .+.+.++++++.++++.. .+.+.+++++
T Consensus 227 ~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~ 303 (324)
T cd08244 227 ALALLAPG-GRFLTYGWASGEWTALDEDDARRRGVTVVGLLGVQAERGGLRALEARALAEAAAGRLVP--VVGQTFPLER 303 (324)
T ss_pred HHHHhccC-cEEEEEecCCCCCCccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCCccC--ccceEEeHHH
Confidence 99999996 99999987654233555455566899988876543211 245777888999998653 4677899999
Q ss_pred HHHHHHHhcCCCe-eeEEeeC
Q 024295 250 IDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 250 ~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++++++.+.++.. +|+++++
T Consensus 304 ~~~a~~~~~~~~~~~kvv~~~ 324 (324)
T cd08244 304 AAEAHAALEARSTVGKVLLLP 324 (324)
T ss_pred HHHHHHHHHcCCCCceEEEeC
Confidence 9999999987766 5998875
No 60
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.97 E-value=5.8e-28 Score=206.94 Aligned_cols=240 Identities=24% Similarity=0.388 Sum_probs=199.4
Q ss_pred ccCCce--eeeecCeEEee---------------------------e--eccCcccceEeeccC-ceEEcCCCCCccccc
Q 024295 16 MLDSTS--RMSVRGQKLYH---------------------------I--FSCSTWSEYMVIDAN-YVVKVDPSIDPSDAS 63 (269)
Q Consensus 16 vg~~~~--~~~~~Gd~v~~---------------------------~--~~~g~~a~~~~v~~~-~~~~vp~~~~~~~aa 63 (269)
+|+++. ++.+ ||+|+. + ...|+|++|+.++++ .++++|+++++++++
T Consensus 77 vG~~v~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa 155 (350)
T cd08256 77 LGEGAEERGVKV-GDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAI 155 (350)
T ss_pred eCCCcccCCCCC-CCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHh
Confidence 577777 7888 999986 2 135899999999988 578999999999999
Q ss_pred ccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCcc
Q 024295 64 FLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKS 143 (269)
Q Consensus 64 ~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~ 143 (269)
.+ .+++++|+++ ..++++++++|+|.|+|++|++++++|+.+|+..++++++++++.+.++++|++.++++.+ .+
T Consensus 156 ~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~~ 230 (350)
T cd08256 156 LI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPE---VD 230 (350)
T ss_pred hh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCC---cC
Confidence 88 7999999997 7889999999999888999999999999999867888999999999999999999998876 77
Q ss_pred HHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhh-hhCCceEEeeeccCCCCCCc
Q 024295 144 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIAL-ACGGRTLKGTTFGGIKTKSD 222 (269)
Q Consensus 144 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 222 (269)
+.+.+.+++++.++|++||++|++..+..++++++++ |+++.+|.... ..+++...+ ..+++++.++.... ..
T Consensus 231 ~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~~~~~~~----~~ 304 (350)
T cd08256 231 VVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKL-GRFVEFSVFGD-PVTVDWSIIGDRKELDVLGSHLGP----YC 304 (350)
T ss_pred HHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEccCCC-CCccChhHhhcccccEEEEeccCc----hh
Confidence 8888888887778999999999765788999999996 99999986542 233333332 24677887776432 46
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEe
Q 024295 223 LPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI 267 (269)
Q Consensus 223 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl 267 (269)
+.++++++.++.+++.+++.++++++++.++++.++++.. +|+++
T Consensus 305 ~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~ 350 (350)
T cd08256 305 YPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL 350 (350)
T ss_pred HHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence 8899999999998765557889999999999999988765 58774
No 61
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.96 E-value=5.7e-28 Score=206.62 Aligned_cols=244 Identities=22% Similarity=0.349 Sum_probs=204.8
Q ss_pred ccCCceeeeecCeEEee---------------------------eeccCcccceEeeccC--ceEEcCCCCCcccccccc
Q 024295 16 MLDSTSRMSVRGQKLYH---------------------------IFSCSTWSEYMVIDAN--YVVKVDPSIDPSDASFLS 66 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~---------------------------~~~~g~~a~~~~v~~~--~~~~vp~~~~~~~aa~~~ 66 (269)
+|+++..+++ ||+|++ +..+|+|++|+.++.. .++++|++++.++++.++
T Consensus 69 ~G~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~ 147 (345)
T cd08260 69 VGEDVSRWRV-GDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLG 147 (345)
T ss_pred ECCCCccCCC-CCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEECCCCCCHHHhhhhc
Confidence 5777778888 999975 3336899999999974 899999999999999999
Q ss_pred cchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH
Q 024295 67 CGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE 146 (269)
Q Consensus 67 ~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~ 146 (269)
+++++||+++....++.++++|+|+|+|++|++++++|+..|+ +|+++++++++.+.++++|++.+++.++ +.++.+
T Consensus 148 ~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~ 224 (345)
T cd08260 148 CRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNASE--VEDVAA 224 (345)
T ss_pred cchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEcccc--chhHHH
Confidence 9999999998888889999999999999999999999999999 8999999999999999999999988762 246777
Q ss_pred HHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCcc--ccchhHhhhhCCceEEeeeccCCCCCCcHH
Q 024295 147 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAM--VPLNVIALACGGRTLKGTTFGGIKTKSDLP 224 (269)
Q Consensus 147 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (269)
.+..+.++ ++|++||++|+.......+++++++ |+++.+|...... ..++...+..++.++.+.... ..+.++
T Consensus 225 ~~~~~~~~-~~d~vi~~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 299 (345)
T cd08260 225 AVRDLTGG-GAHVSVDALGIPETCRNSVASLRKR-GRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGM---PAHRYD 299 (345)
T ss_pred HHHHHhCC-CCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcC---CHHHHH
Confidence 78877777 8999999998766788999999996 9999998765321 455555565688888887542 246788
Q ss_pred HHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295 225 TLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT 268 (269)
Q Consensus 225 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~ 268 (269)
.+++++.++++.+.+.+.+.+++++++++++.+..+.. +|+|++
T Consensus 300 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~ 344 (345)
T cd08260 300 AMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT 344 (345)
T ss_pred HHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence 99999999998765556788999999999999887765 588864
No 62
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.96 E-value=7.2e-28 Score=205.83 Aligned_cols=241 Identities=24% Similarity=0.388 Sum_probs=199.3
Q ss_pred ccCCceeeeecCeEEee------------------------e----eccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295 16 MLDSTSRMSVRGQKLYH------------------------I----FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC 67 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~------------------------~----~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~ 67 (269)
+|+++.++++ ||+|++ + ...|+|++|++++++.++++|+++++++++.+ .
T Consensus 69 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~ 146 (343)
T cd05285 69 VGSGVTHLKV-GDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-E 146 (343)
T ss_pred eCCCCCCCCC-CCEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-h
Confidence 5777788898 999975 1 12589999999999999999999999999877 5
Q ss_pred chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccH---
Q 024295 68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSI--- 144 (269)
Q Consensus 68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~--- 144 (269)
++++|++++ ..+.++++++|||+|+|++|++++|+|+.+|++.|+++++++++.+.++++|+++++++++ .++
T Consensus 147 ~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~---~~~~~~ 222 (343)
T cd05285 147 PLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT---EDTPES 222 (343)
T ss_pred HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEecccc---ccchhH
Confidence 888999986 7899999999999988999999999999999944999998899999999999999998875 453
Q ss_pred HHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHH
Q 024295 145 SELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLP 224 (269)
Q Consensus 145 ~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (269)
.+.+.+.+++.++|++|||+|....+..++++++++ |+++.+|.... ...++......++.++.++... .+.+.
T Consensus 223 ~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 296 (343)
T cd05285 223 AEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPG-GTVVLVGMGKP-EVTLPLSAASLREIDIRGVFRY----ANTYP 296 (343)
T ss_pred HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC-CCccCHHHHhhCCcEEEEeccC----hHHHH
Confidence 777888777778999999999866789999999996 99999986543 2344444556678888776422 25788
Q ss_pred HHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCC-e-eeEEee
Q 024295 225 TLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD-C-VKVLIT 268 (269)
Q Consensus 225 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~-~k~vl~ 268 (269)
++++++.++++.+.+.+.++++++++.++++.+.++. . +|++|.
T Consensus 297 ~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~ 342 (343)
T cd05285 297 TAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVIE 342 (343)
T ss_pred HHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEEe
Confidence 8999999998765555778899999999999988763 3 799873
No 63
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.96 E-value=7.6e-28 Score=208.54 Aligned_cols=247 Identities=21% Similarity=0.334 Sum_probs=198.7
Q ss_pred cccCCceeeeecCeEEee---------------------------eeccCcccceEeeccCceEEcCCCC-------Ccc
Q 024295 15 LMLDSTSRMSVRGQKLYH---------------------------IFSCSTWSEYMVIDANYVVKVDPSI-------DPS 60 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~---------------------------~~~~g~~a~~~~v~~~~~~~vp~~~-------~~~ 60 (269)
.+|.++..+++ ||+|+. +..+|+|++|++++++.++++|+++ +.+
T Consensus 101 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~ 179 (384)
T cd08265 101 KTGKNVKNFEK-GDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE 179 (384)
T ss_pred EECCCCCCCCC-CCEEEECCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccccccccCCCHH
Confidence 35777778888 999974 3336899999999999999999863 444
Q ss_pred cccccccchhhhHHHHHHh-cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCC
Q 024295 61 DASFLSCGFTTGYGAAWKE-AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDE 139 (269)
Q Consensus 61 ~aa~~~~~~~~a~~~l~~~-~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~ 139 (269)
++.+..++++||+++... .+++++++|||+|+|++|++++++|+..|+++|+++++++++.+.++++|+++++++++.
T Consensus 180 -~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~ 258 (384)
T cd08265 180 -AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKM 258 (384)
T ss_pred -HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEccccc
Confidence 555667899999998666 789999999999989999999999999998779999988889999999999999987741
Q ss_pred CCccHHHHHHhhhCCCCccEEEEccCCh-hHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCC
Q 024295 140 PNKSISELVKGITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIK 218 (269)
Q Consensus 140 ~~~~~~~~i~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (269)
+..++.+.+++++++.++|+++|++|.+ ..+..++++++++ |+++.+|.... ..++....+..++.++.+++...
T Consensus 259 ~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~l~~~~~~~-- 334 (384)
T cd08265 259 RDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAIN-GKIVYIGRAAT-TVPLHLEVLQVRRAQIVGAQGHS-- 334 (384)
T ss_pred ccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcC-CEEEEECCCCC-CCcccHHHHhhCceEEEEeeccC--
Confidence 1237888888888877999999999863 4678999999996 99999986542 33344445555777888765322
Q ss_pred CCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEe
Q 024295 219 TKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267 (269)
Q Consensus 219 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl 267 (269)
....+.++++++.++.+++..+++++|++++++++++.+.++..+|+|+
T Consensus 335 ~~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~kvvv 383 (384)
T cd08265 335 GHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASERTDGKITI 383 (384)
T ss_pred CcchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEe
Confidence 2346899999999999876656778999999999999977665568775
No 64
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.96 E-value=4.4e-28 Score=205.29 Aligned_cols=245 Identities=21% Similarity=0.270 Sum_probs=205.5
Q ss_pred cccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-
Q 024295 15 LMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL- 93 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~- 93 (269)
.+|+++.++++ ||+|++....|+|++|+.++...++++|+++++.+++.+++.+.+|++++.....+.++++|||+|+
T Consensus 70 ~~G~~v~~~~~-Gd~V~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~ 148 (323)
T cd05282 70 EVGSGVSGLLV-GQRVLPLGGEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAAN 148 (323)
T ss_pred EeCCCCCCCCC-CCEEEEeCCCCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccc
Confidence 36788888898 9999987645899999999999999999999999999999999999999888888899999999986
Q ss_pred ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHH
Q 024295 94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA 173 (269)
Q Consensus 94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~ 173 (269)
|.+|++++++|+.+|+ +++++.+++++.+.++++|++.++++.+ .++.+.+.+.+++.++|+++|++|+. .....
T Consensus 149 ~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~g~~-~~~~~ 223 (323)
T cd05282 149 SAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSSP---EDLAQRVKEATGGAGARLALDAVGGE-SATRL 223 (323)
T ss_pred cHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEecccc---hhHHHHHHHHhcCCCceEEEECCCCH-HHHHH
Confidence 8999999999999999 8899988999999999999999998876 67888888888777999999999986 56788
Q ss_pred HHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC-------CCcHHHHHHHHHCCCCCCCcceeEEee
Q 024295 174 LETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT-------KSDLPTLLDKCKNKEFKLHQLLTHHVK 246 (269)
Q Consensus 174 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~g~~~~~~~~~~~~~ 246 (269)
+++++++ |+++.+|........++...+..++.++.+.....+.. .+.+.++++++.++++.+ .+.++++
T Consensus 224 ~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~ 300 (323)
T cd05282 224 ARSLRPG-GTLVNYGLLSGEPVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTT--PVGAKFP 300 (323)
T ss_pred HHhhCCC-CEEEEEccCCCCCCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCccc--Cccceec
Confidence 9999996 99999987653233455555555899998877654321 134777888999998654 3677899
Q ss_pred hhhHHHHHHHhcCCCe-eeEEee
Q 024295 247 LEEIDKAIQLLKQPDC-VKVLIT 268 (269)
Q Consensus 247 ~~~~~~a~~~~~~~~~-~k~vl~ 268 (269)
+++++++++.+.++.. +|+|++
T Consensus 301 ~~~~~~a~~~~~~~~~~~kvv~~ 323 (323)
T cd05282 301 LEDFEEAVAAAEQPGRGGKVLLT 323 (323)
T ss_pred HHHHHHHHHHHhcCCCCceEeeC
Confidence 9999999999887665 588764
No 65
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.96 E-value=1e-27 Score=204.81 Aligned_cols=243 Identities=25% Similarity=0.384 Sum_probs=201.8
Q ss_pred ccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCc-----eEEcCCCCCccccc
Q 024295 16 MLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANY-----VVKVDPSIDPSDAS 63 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~-----~~~vp~~~~~~~aa 63 (269)
+|.++..+++ ||+|++.. ..|+|++|++++++. ++++|+++++++++
T Consensus 68 ~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa 146 (343)
T cd08235 68 VGDGVTGFKV-GDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAA 146 (343)
T ss_pred eCCCCCCCCC-CCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHHHH
Confidence 5777778888 99998752 358999999999988 99999999999998
Q ss_pred ccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCcc
Q 024295 64 FLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKS 143 (269)
Q Consensus 64 ~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~ 143 (269)
.+ +++.+|++++. ..+++++++|||+|+|.+|++++|+|+..|++.|+++++++++.+.++++|.++++++++ .+
T Consensus 147 ~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~---~~ 221 (343)
T cd08235 147 LV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAE---ED 221 (343)
T ss_pred hh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCc---cC
Confidence 76 78899999885 458999999999988999999999999999943999988999999998999999998887 78
Q ss_pred HHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCCCCCCc
Q 024295 144 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIKTKSD 222 (269)
Q Consensus 144 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (269)
+.+.+++..++.++|+++|++++......++++++++ |+++.+|.... ....++...+..++..+.++... ..+.
T Consensus 222 ~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~ 297 (343)
T cd08235 222 LVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGLPKGSTVNIDPNLIHYREITITGSYAA---SPED 297 (343)
T ss_pred HHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEeccCCCCCcccCHHHHhhCceEEEEEecC---Chhh
Confidence 8888888877778999999999766788999999996 99999986543 23444555566688888776532 2356
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295 223 LPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268 (269)
Q Consensus 223 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~ 268 (269)
++.++++++++.+++.+.+..+++++++.++++.+.++..+|+|++
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~ 343 (343)
T cd08235 298 YKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGKSLKIVIT 343 (343)
T ss_pred HHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCCcEEEEeC
Confidence 8889999999997754456778999999999999887664588874
No 66
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.96 E-value=9.2e-28 Score=205.00 Aligned_cols=243 Identities=25% Similarity=0.366 Sum_probs=205.0
Q ss_pred ccccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCCccccccc
Q 024295 14 GLMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFL 65 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~ 65 (269)
-.+|+++..+++ ||+|+... ..|++++|+.++++.++++|+++++++++.+
T Consensus 69 ~~vG~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l 147 (341)
T cd08297 69 VAVGPGVSGLKV-GDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPL 147 (341)
T ss_pred EEeCCCCCCCCC-CCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHHHH
Confidence 346778888888 99997642 2589999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccH
Q 024295 66 SCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSI 144 (269)
Q Consensus 66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~ 144 (269)
+..+.+||+++.. .+++++++|||+|+ +.+|++++++++.+|+ +|+++++++++.+.++++|++.++++.+ .++
T Consensus 148 ~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~~~ 222 (341)
T cd08297 148 LCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFVDFKK---SDD 222 (341)
T ss_pred HcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcEEEcCCC---ccH
Confidence 9999999998765 58999999999987 6799999999999999 9999999999999999999999998876 678
Q ss_pred HHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHH
Q 024295 145 SELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLP 224 (269)
Q Consensus 145 ~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (269)
.+.+.+++++.++|+++|+.+.......++++++++ |+++.+|.......+++...++.++.++.+.... ..+.++
T Consensus 223 ~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 298 (341)
T cd08297 223 VEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVG---TRQDLQ 298 (341)
T ss_pred HHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcC-CEEEEecCCCCCCCCCCHHHHHhcccEEEEeccC---CHHHHH
Confidence 888888887779999999887766889999999996 9999998665323356666666789998886432 236789
Q ss_pred HHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 225 TLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 225 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++++++.++++++ .+ +.+++++++++++.+..+.. +|++++|
T Consensus 299 ~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 341 (341)
T cd08297 299 EALEFAARGKVKP--HI-QVVPLEDLNEVFEKMEEGKIAGRVVVDF 341 (341)
T ss_pred HHHHHHHcCCCcc--ee-EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 9999999999754 34 57999999999999988766 5999875
No 67
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.96 E-value=5.9e-28 Score=210.20 Aligned_cols=246 Identities=19% Similarity=0.228 Sum_probs=201.1
Q ss_pred cccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295 15 LMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS 66 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~ 66 (269)
.+|+++..+++ ||+|+... ..|+|+||++++++.++++|+++++++++.+.
T Consensus 91 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~~~~aa~~~ 169 (398)
T TIGR01751 91 RVGPGVTRWKV-GDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEAACPG 169 (398)
T ss_pred EeCCCCCCCCC-CCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCCHHHHhhcc
Confidence 35778888888 99997643 24899999999999999999999999999999
Q ss_pred cchhhhHHHHHH--hcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC---
Q 024295 67 CGFTTGYGAAWK--EAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP--- 140 (269)
Q Consensus 67 ~~~~~a~~~l~~--~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~--- 140 (269)
+++.+||+++.. .++++++++|+|+|+ |++|++++++++.+|+ +++++++++++.+.++++|++.++|+++.+
T Consensus 170 ~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~ 248 (398)
T TIGR01751 170 LTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVVSSPEKAEYCRELGAEAVIDRNDFGHWG 248 (398)
T ss_pred chHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCCEEecCCCcchhh
Confidence 999999999765 577889999999997 9999999999999999 788888888999999999999999875410
Q ss_pred ----------------CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhh
Q 024295 141 ----------------NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALAC 204 (269)
Q Consensus 141 ----------------~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~ 204 (269)
...+.+.+.+++++.++|++|||+|.. .+..++++++++ |+++.+|.......+++...+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~ 326 (398)
T TIGR01751 249 RLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRA-TFPTSVFVCRRG-GMVVICGGTTGYNHDYDNRYLWM 326 (398)
T ss_pred ccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHH-HHHHHHHhhccC-CEEEEEccccCCCCCcCHHHHhh
Confidence 012556677777767899999999864 788999999996 99999997654334555556666
Q ss_pred CCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 205 GGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++.++.++.... .+++.+++++++++++. +.+++++++++++++|+.+.++.. +|+|+++
T Consensus 327 ~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~--~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 387 (398)
T TIGR01751 327 RQKRIQGSHFAN---LREAWEANRLVAKGRID--PTLSKVYPLEEIGQAHQDVHRNHHQGNVAVLV 387 (398)
T ss_pred cccEEEccccCc---HHHHHHHHHHHHCCCcc--cceeeEEcHHHHHHHHHHHHcCCCCceEEEEe
Confidence 788887776443 24578899999999865 347789999999999999887765 5888763
No 68
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.96 E-value=1.4e-27 Score=201.28 Aligned_cols=245 Identities=22% Similarity=0.314 Sum_probs=199.4
Q ss_pred ccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC
Q 024295 14 GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL 93 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~ 93 (269)
-.+|+++..+++ ||+|++.. .|+|++|++++++.++++|+++ ..++....++++|++++. ..+++++++|||+|+
T Consensus 64 ~~vG~~v~~~~~-Gd~V~~~~-~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~ 138 (312)
T cd08269 64 VALGPGVRGLAV-GDRVAGLS-GGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFR-RGWIRAGKTVAVIGA 138 (312)
T ss_pred EEECCCCcCCCC-CCEEEEec-CCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHH-hcCCCCCCEEEEECC
Confidence 346778778888 99998765 4889999999999999999988 233322368889999875 888999999999988
Q ss_pred ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHH
Q 024295 94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA 173 (269)
Q Consensus 94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~ 173 (269)
|.+|.+++++|+.+|++.|+++++++++.+.++++|++++++.++ .++.+.+.+++++.++|+++|++|+......+
T Consensus 139 g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~ 215 (312)
T cd08269 139 GFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDS---EAIVERVRELTGGAGADVVIEAVGHQWPLDLA 215 (312)
T ss_pred CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCC---cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHH
Confidence 999999999999999943999998888999889999998888776 77888888888777999999999877678999
Q ss_pred HHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC-CCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHH
Q 024295 174 LETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI-KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDK 252 (269)
Q Consensus 174 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 252 (269)
+++++++ |+++.+|.....+.++++..+.+++.++.++..... ...+.+++++++++++++.+...+.++++++++++
T Consensus 216 ~~~l~~~-g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 294 (312)
T cd08269 216 GELVAER-GRLVIFGYHQDGPRPVPFQTWNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGD 294 (312)
T ss_pred HHHhccC-CEEEEEccCCCCCcccCHHHHhhcCCEEEEecccCccchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHH
Confidence 9999996 999999865433344555566668888877643322 12357889999999999776444667899999999
Q ss_pred HHHHhcCCCe--eeEEe
Q 024295 253 AIQLLKQPDC--VKVLI 267 (269)
Q Consensus 253 a~~~~~~~~~--~k~vl 267 (269)
+++.+.+++. +|+++
T Consensus 295 a~~~~~~~~~~~~~~~~ 311 (312)
T cd08269 295 AFEAARRRPDGFIKGVI 311 (312)
T ss_pred HHHHHHhCCCCceEEEe
Confidence 9999988764 69886
No 69
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.96 E-value=6e-28 Score=205.32 Aligned_cols=246 Identities=25% Similarity=0.280 Sum_probs=202.2
Q ss_pred cccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-
Q 024295 15 LMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL- 93 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~- 93 (269)
.+|+++.++++ ||+|+++..+|+|++|++++.+.++++|++++.++++.+++++.+|++++...+.++++++|+|+|+
T Consensus 72 ~vG~~v~~~~~-Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~ 150 (334)
T PTZ00354 72 DVGSDVKRFKE-GDRVMALLPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGA 150 (334)
T ss_pred EeCCCCCCCCC-CCEEEEecCCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence 36777778888 9999988656899999999999999999999999999999999999999888889999999999985
Q ss_pred ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCcc-HHHHHHhhhCCCCccEEEEccCChhHHHH
Q 024295 94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKS-ISELVKGITHGMGVDYCFECTGVPSLLSE 172 (269)
Q Consensus 94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-~~~~i~~~~~~~~~d~v~d~~g~~~~~~~ 172 (269)
|++|++++++++..|+ +++.+.+++++.+.++++|++++++... .+ +.+.+++.+++.++|++||++++. .+..
T Consensus 151 g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~ 225 (334)
T PTZ00354 151 SGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAIILIRYPD---EEGFAPKVKKLTGEKGVNLVLDCVGGS-YLSE 225 (334)
T ss_pred chHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCC---hhHHHHHHHHHhCCCCceEEEECCchH-HHHH
Confidence 9999999999999999 7777888899999999999998888765 44 778888887777999999999865 7789
Q ss_pred HHHHcccCCcEEEEEccCCCcccc-chhHhhhhCCceEEeeeccCCCCC-------CcHHHHHHHHHCCCCCCCcceeEE
Q 024295 173 ALETTKVGKGKVIVIGVGVDAMVP-LNVIALACGGRTLKGTTFGGIKTK-------SDLPTLLDKCKNKEFKLHQLLTHH 244 (269)
Q Consensus 173 ~~~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~g~~~~~~~~~~~ 244 (269)
++++++++ |+++.+|........ ++...+..++.++.++........ +.++++++++.++.++. .+.++
T Consensus 226 ~~~~l~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ 302 (334)
T PTZ00354 226 TAEVLAVD-GKWIVYGFMGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKP--IVDRT 302 (334)
T ss_pred HHHHhccC-CeEEEEecCCCCcccccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCccC--ccccE
Confidence 99999996 999999865432222 555556667778888765432110 22467888898998653 36778
Q ss_pred eehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 245 VKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
+++++++++++.+.++.. +|+|+++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~kvvv~~ 328 (334)
T PTZ00354 303 YPLEEVAEAHTFLEQNKNIGKVVLTV 328 (334)
T ss_pred EcHHHHHHHHHHHHhCCCCceEEEec
Confidence 999999999998887654 5888864
No 70
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.96 E-value=7.7e-28 Score=206.14 Aligned_cols=240 Identities=22% Similarity=0.322 Sum_probs=196.6
Q ss_pred ccccCCceeeeecCeEEeeee-------------------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHH
Q 024295 14 GLMLDSTSRMSVRGQKLYHIF-------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYG 74 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~-------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~ 74 (269)
-.+|+++.++++ ||+|++.. .+|++++|+.++.+.++++|+++++++++.+++++.+||+
T Consensus 90 ~~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~ 168 (350)
T cd08274 90 VAVGEGVDTARI-GERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAEN 168 (350)
T ss_pred EEeCCCCCCCCC-CCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHH
Confidence 345788888998 99998631 2489999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhC
Q 024295 75 AAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITH 153 (269)
Q Consensus 75 ~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~ 153 (269)
++ ...+++++++|||+|+ |++|++++++++.+|+ ++++++.++ +.+.++++|++.+++..+ ..+.+ ...++
T Consensus 169 ~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~~~~~-~~~~~~~~g~~~~~~~~~---~~~~~--~~~~~ 240 (350)
T cd08274 169 ML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAVAGAA-KEEAVRALGADTVILRDA---PLLAD--AKALG 240 (350)
T ss_pred HH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCch-hhHHHHhcCCeEEEeCCC---ccHHH--HHhhC
Confidence 87 7789999999999997 9999999999999999 788888655 888889999876666543 33433 44556
Q ss_pred CCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCC
Q 024295 154 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK 233 (269)
Q Consensus 154 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 233 (269)
+.++|++||++|+. .+..++++++++ |+++.+|.......+++...++.++.++.++.... .+.+.++++++.++
T Consensus 241 ~~~~d~vi~~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~ 315 (350)
T cd08274 241 GEPVDVVADVVGGP-LFPDLLRLLRPG-GRYVTAGAIAGPVVELDLRTLYLKDLTLFGSTLGT---REVFRRLVRYIEEG 315 (350)
T ss_pred CCCCcEEEecCCHH-HHHHHHHHhccC-CEEEEecccCCccccCCHHHhhhcceEEEEeecCC---HHHHHHHHHHHHCC
Confidence 66899999999975 789999999996 99999986542224566666667899998876532 36788999999999
Q ss_pred CCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 234 EFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
+++. .+.+++++++++++++.+.++.. +|+|+++
T Consensus 316 ~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~ 350 (350)
T cd08274 316 EIRP--VVAKTFPLSEIREAQAEFLEKRHVGKLVLVP 350 (350)
T ss_pred Cccc--ccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence 8653 46788999999999999887665 5988864
No 71
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.96 E-value=1.7e-27 Score=203.61 Aligned_cols=246 Identities=26% Similarity=0.356 Sum_probs=200.6
Q ss_pred ccccCCceeeeecCeEEee-ee--------------------------ccCcccceEeeccC--ceEEcCCCCCccccc-
Q 024295 14 GLMLDSTSRMSVRGQKLYH-IF--------------------------SCSTWSEYMVIDAN--YVVKVDPSIDPSDAS- 63 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~-~~--------------------------~~g~~a~~~~v~~~--~~~~vp~~~~~~~aa- 63 (269)
-.+|+++.++++ ||+|++ .. .+|+|++|+.++.. .++++|++++++.+.
T Consensus 66 ~~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~ 144 (345)
T cd08287 66 EEVGSEVTSVKP-GDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLL 144 (345)
T ss_pred EEeCCCCCccCC-CCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhhh
Confidence 336788888888 999976 21 12889999999974 999999999873221
Q ss_pred ----ccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCC
Q 024295 64 ----FLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDE 139 (269)
Q Consensus 64 ----~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~ 139 (269)
++...+++|++++ ..+.++++++|+|.|+|++|++++|+|+..|++.++++++++++.+.++++|++.++++.+
T Consensus 145 ~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~- 222 (345)
T cd08287 145 PSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERG- 222 (345)
T ss_pred hhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCc-
Confidence 1225688899987 4678999999999989999999999999999966899998888999999999999999886
Q ss_pred CCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC
Q 024295 140 PNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT 219 (269)
Q Consensus 140 ~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (269)
..+.+.+.+.+++.++|+++|++|++..+..++++++++ |+++.+|.... ...++....+.++.++.+.... .
T Consensus 223 --~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~---~ 295 (345)
T cd08287 223 --EEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGVPHG-GVELDVRELFFRNVGLAGGPAP---V 295 (345)
T ss_pred --ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccC-CEEEEecccCC-CCccCHHHHHhcceEEEEecCC---c
Confidence 778888888877779999999998877889999999996 99999987652 3445554555689999875322 2
Q ss_pred CCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295 220 KSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269 (269)
Q Consensus 220 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~ 269 (269)
.+.++++++++.++++++.+.+.+++++++++++++.+.++...|++|++
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~~~~~ 345 (345)
T cd08287 296 RRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRAIKVLLRP 345 (345)
T ss_pred HHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCceEEEeCC
Confidence 35789999999999987655577899999999999998877767999874
No 72
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=99.96 E-value=3.3e-28 Score=191.86 Aligned_cols=233 Identities=20% Similarity=0.235 Sum_probs=191.8
Q ss_pred cccCCceeeeecCeEEeeeec-cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC
Q 024295 15 LMLDSTSRMSVRGQKLYHIFS-CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL 93 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~~-~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~ 93 (269)
-+|+++.+|.+ ||.|+.... .|+|++|.+.+++.++++++.++++.||++..+.+|||++|....++++|++|+-.|+
T Consensus 91 ~vGs~vkgfk~-Gd~VIp~~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNga 169 (354)
T KOG0025|consen 91 AVGSNVKGFKP-GDWVIPLSANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGA 169 (354)
T ss_pred EecCCcCccCC-CCeEeecCCCCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCc
Confidence 35788888999 999986543 4999999999999999999999999999999999999999999999999999999987
Q ss_pred -ChhHHHHHHHHHHcCCCeEEEEcCCcchHHH----HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChh
Q 024295 94 -GTVGLGAVDGARMHGAAKIIGIDKNPWKKEK----GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS 168 (269)
Q Consensus 94 -g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~----~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~ 168 (269)
+.+|++.+|+||+.|+ +.+.+.|+....+. ++.+||++++...+..+.+.. ........+.+.|||+|+.
T Consensus 170 nS~VG~~ViQlaka~Gi-ktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~~~~---k~~~~~~~prLalNcVGGk- 244 (354)
T KOG0025|consen 170 NSGVGQAVIQLAKALGI-KTINVVRDRPNIEELKKQLKSLGATEVITEEELRDRKMK---KFKGDNPRPRLALNCVGGK- 244 (354)
T ss_pred ccHHHHHHHHHHHHhCc-ceEEEeecCccHHHHHHHHHHcCCceEecHHHhcchhhh---hhhccCCCceEEEeccCch-
Confidence 8999999999999999 77777777655444 456999999976542122221 1212345899999999998
Q ss_pred HHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCC--------CcHHHHHHHHHCCCCCCCcc
Q 024295 169 LLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTK--------SDLPTLLDKCKNKEFKLHQL 240 (269)
Q Consensus 169 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~g~~~~~~~ 240 (269)
+..++.+.|..| |+.+.||...-.+.+++...+++|++.+.|+|+..+... +.+.++.+++..|+++.+.
T Consensus 245 sa~~iar~L~~G-gtmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~- 322 (354)
T KOG0025|consen 245 SATEIARYLERG-GTMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPN- 322 (354)
T ss_pred hHHHHHHHHhcC-ceEEEecCccCCCcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeecccc-
Confidence 557899999997 999999988767888999999999999999999887432 3467899999999987663
Q ss_pred eeEEeehhhHHHHHHH
Q 024295 241 LTHHVKLEEIDKAIQL 256 (269)
Q Consensus 241 ~~~~~~~~~~~~a~~~ 256 (269)
....++++...|++.
T Consensus 323 -~e~v~L~~~~tald~ 337 (354)
T KOG0025|consen 323 -CEKVPLADHKTALDA 337 (354)
T ss_pred -ceeeechhhhHHHHH
Confidence 345788888777773
No 73
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.96 E-value=2.6e-27 Score=202.19 Aligned_cols=244 Identities=25% Similarity=0.356 Sum_probs=198.1
Q ss_pred cccCCceeeeecCeEEeee---------------------------eccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295 15 LMLDSTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC 67 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~ 67 (269)
.+|+++.++++ ||+|++. ...|+|++|++++++.++++|++++.+++ .++.
T Consensus 69 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~ 146 (340)
T TIGR00692 69 GIGPGVEGIKV-GDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQE 146 (340)
T ss_pred EECCCCCcCCC-CCEEEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcc
Confidence 35788888999 9999862 24589999999999999999999998655 4667
Q ss_pred chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295 68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL 147 (269)
Q Consensus 68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~ 147 (269)
++.+|++++ ....+++++++|.|+|++|.+++|+++.+|++.|+++++++++.+.++++|++.++++.+ .++.+.
T Consensus 147 ~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~---~~~~~~ 221 (340)
T TIGR00692 147 PLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK---EDVVKE 221 (340)
T ss_pred hHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccc---cCHHHH
Confidence 888998876 345778999999888999999999999999944888888888999999999998898876 778888
Q ss_pred HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhH-hhhhCCceEEeeeccCCCCCCcHHHH
Q 024295 148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVI-ALACGGRTLKGTTFGGIKTKSDLPTL 226 (269)
Q Consensus 148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (269)
+.+.+++.++|++||++|+...+...+++++++ |+++.+|.... ..+++.. .+++++.++.+..... ..+.+.++
T Consensus 222 l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 297 (340)
T TIGR00692 222 VADLTDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGLPPG-KVTIDFTNKVIFKGLTIYGITGRH--MFETWYTV 297 (340)
T ss_pred HHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCC-CEEEEEccCCC-CcccchhhhhhhcceEEEEEecCC--chhhHHHH
Confidence 888877678999999998776889999999996 99999987542 2233333 4555777877654211 22457889
Q ss_pred HHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295 227 LDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269 (269)
Q Consensus 227 ~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~ 269 (269)
++++.++++++.+++.+.++++++.++++.+.++..+|+|+++
T Consensus 298 ~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~gkvvv~~ 340 (340)
T TIGR00692 298 SRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQTGKVILSL 340 (340)
T ss_pred HHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCCCceEEEeC
Confidence 9999999987655678899999999999998876667999875
No 74
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.96 E-value=3e-27 Score=201.40 Aligned_cols=240 Identities=26% Similarity=0.400 Sum_probs=201.5
Q ss_pred ccCCceeeeecCeEEee------------------e---------eccCcccceEeeccCceEEcCCCCCcccccccccc
Q 024295 16 MLDSTSRMSVRGQKLYH------------------I---------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCG 68 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~------------------~---------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~ 68 (269)
+|+++..+++ ||+|+. + ..+|+|++|+.++.+.++++|++++.++++.++.+
T Consensus 71 ~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~ 149 (338)
T cd08254 71 VGAGVTNFKV-GDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDA 149 (338)
T ss_pred ECCCCccCCC-CCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhhhcch
Confidence 4777777888 999975 1 12489999999999999999999999999999999
Q ss_pred hhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHH
Q 024295 69 FTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELV 148 (269)
Q Consensus 69 ~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i 148 (269)
+++||+++.....++++++|||.|+|++|++++++|+..|+ +|+++++++++.+.++++|.+++++..+ ..+.+.+
T Consensus 150 ~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~~---~~~~~~~ 225 (338)
T cd08254 150 VLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLD---DSPKDKK 225 (338)
T ss_pred HHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCCC---cCHHHHH
Confidence 99999998888889999999999889999999999999999 8999999999999999999988888775 5666666
Q ss_pred HhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHH
Q 024295 149 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLD 228 (269)
Q Consensus 149 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (269)
...++.++|+++|++|....+..++++++++ |+++.+|.... ...++...+..++.++.+++.. ..+.+..+++
T Consensus 226 -~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 299 (338)
T cd08254 226 -AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRD-KLTVDLSDLIARELRIIGSFGG---TPEDLPEVLD 299 (338)
T ss_pred -HHhcCCCceEEEECCCCHHHHHHHHHHhhcC-CEEEEECCCCC-CCccCHHHHhhCccEEEEeccC---CHHHHHHHHH
Confidence 5555568999999998777889999999996 99999986542 3345555666788888876532 2467888999
Q ss_pred HHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 229 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 229 l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
+++++.+++. .+++++++++++++.+.++.. +|+|+++
T Consensus 300 ll~~~~l~~~---~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 338 (338)
T cd08254 300 LIAKGKLDPQ---VETRPLDEIPEVLERLHKGKVKGRVVLVP 338 (338)
T ss_pred HHHcCCCccc---ceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 9999997754 468999999999999988766 5999875
No 75
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.96 E-value=3.5e-27 Score=201.44 Aligned_cols=244 Identities=20% Similarity=0.292 Sum_probs=197.3
Q ss_pred ccccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295 14 GLMLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS 66 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~ 66 (269)
-.+|+++..+++ ||+|++.. .+|+|++|+.++.+.++++|+++++++++.+
T Consensus 70 ~~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~- 147 (341)
T PRK05396 70 VEVGSEVTGFKV-GDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIF- 147 (341)
T ss_pred EEeCCCCCcCCC-CCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHhh-
Confidence 345788888999 99998641 3589999999999999999999999888754
Q ss_pred cchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH
Q 024295 67 CGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE 146 (269)
Q Consensus 67 ~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~ 146 (269)
.++.++++++.. ..+++++|+|.|+|++|++++|+++.+|+++|+++++++++.+.++++|+++++++++ .++.+
T Consensus 148 ~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~---~~~~~ 222 (341)
T PRK05396 148 DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAK---EDLRD 222 (341)
T ss_pred hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc---ccHHH
Confidence 566777666532 3468999999988999999999999999966888888889999999999999998876 77888
Q ss_pred HHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHH
Q 024295 147 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTL 226 (269)
Q Consensus 147 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (269)
.+++++++.++|++|||+|+...+..++++++++ |+++.+|.... ..+++...+.++++++.++.... ..+.+..+
T Consensus 223 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~ 298 (341)
T PRK05396 223 VMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHG-GRIAMLGIPPG-DMAIDWNKVIFKGLTIKGIYGRE--MFETWYKM 298 (341)
T ss_pred HHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCC-CCcccHHHHhhcceEEEEEEccC--ccchHHHH
Confidence 8888877779999999998877889999999996 99999987653 33344456667888888765222 12446678
Q ss_pred HHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295 227 LDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269 (269)
Q Consensus 227 ~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~ 269 (269)
++++.++ +++.+.+.+++++++++++|+.+..+..+|++++|
T Consensus 299 ~~~~~~~-~~~~~~~~~~~~l~~~~~a~~~~~~~~~gk~vv~~ 340 (341)
T PRK05396 299 SALLQSG-LDLSPIITHRFPIDDFQKGFEAMRSGQSGKVILDW 340 (341)
T ss_pred HHHHHcC-CChhHheEEEEeHHHHHHHHHHHhcCCCceEEEec
Confidence 8899888 54555677899999999999988776657999875
No 76
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.96 E-value=5.4e-27 Score=200.42 Aligned_cols=244 Identities=25% Similarity=0.385 Sum_probs=197.9
Q ss_pred ccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccccc
Q 024295 16 MLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCG 68 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~ 68 (269)
+|.++..+++ ||+|+++. ..|+|++|++++++.++++|+++++++++++ ..
T Consensus 67 ~g~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~ 144 (343)
T cd08236 67 VGSGVDDLAV-GDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EP 144 (343)
T ss_pred ECCCCCcCCC-CCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-ch
Confidence 5777778899 99998762 3589999999999999999999999999887 58
Q ss_pred hhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHH
Q 024295 69 FTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELV 148 (269)
Q Consensus 69 ~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i 148 (269)
+++||+++. ..+++++++|||+|+|.+|.+++|+|+.+|++.|+++++++++.+.++++|++.++++++ .. .+.+
T Consensus 145 ~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~---~~-~~~~ 219 (343)
T cd08236 145 AAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE---ED-VEKV 219 (343)
T ss_pred HHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcc---cc-HHHH
Confidence 899999885 788999999999988999999999999999944999998889999998999999998876 55 6777
Q ss_pred HhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCc-c-ccchhHhhhhCCceEEeeeccCCC--CCCcHH
Q 024295 149 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDA-M-VPLNVIALACGGRTLKGTTFGGIK--TKSDLP 224 (269)
Q Consensus 149 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 224 (269)
.+..++.++|++||++|....+..++++++++ |+++.+|..... . ...+...++.++.++.++...... .++.++
T Consensus 220 ~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (343)
T cd08236 220 RELTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWR 298 (343)
T ss_pred HHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeeccccccchhhHH
Confidence 77777768999999998766789999999996 999999865431 1 112233445688888887653221 135688
Q ss_pred HHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcC-CCe-eeEEe
Q 024295 225 TLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ-PDC-VKVLI 267 (269)
Q Consensus 225 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~-~k~vl 267 (269)
++++++.++++.+.+.+..++++++++++++.+.+ +.. .|+|+
T Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~ 343 (343)
T cd08236 299 TALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL 343 (343)
T ss_pred HHHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence 89999999997644456678999999999999887 443 58764
No 77
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.96 E-value=1.9e-27 Score=203.08 Aligned_cols=246 Identities=22% Similarity=0.256 Sum_probs=201.1
Q ss_pred ccccCCceeeeecCeEEeeee-ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295 14 GLMLDSTSRMSVRGQKLYHIF-SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG 92 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~-~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G 92 (269)
-.+|+++..+++ ||+|++.. ..|+|++|+.++.+.++++|+++++++++.+++.+++||+++.....++++++|||+|
T Consensus 76 ~~vG~~v~~~~~-Gd~V~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g 154 (341)
T cd08290 76 VKVGSGVKSLKP-GDWVIPLRPGLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNG 154 (341)
T ss_pred EEeCCCCCCCCC-CCEEEecCCCCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEcc
Confidence 345777778899 99998764 3589999999999999999999999999999999999999988778899999999998
Q ss_pred C-ChhHHHHHHHHHHcCCCeEEEEcCCc----chHHHHHhCCCceeeCCCCCCCc---cHHHHHHhhhCCCCccEEEEcc
Q 024295 93 L-GTVGLGAVDGARMHGAAKIIGIDKNP----WKKEKGKAFGMTDFINPDDEPNK---SISELVKGITHGMGVDYCFECT 164 (269)
Q Consensus 93 ~-g~~G~~a~~la~~~g~~~v~~~~~~~----~~~~~~~~~g~~~v~~~~~~~~~---~~~~~i~~~~~~~~~d~v~d~~ 164 (269)
+ |++|++++|+|+..|+ +++++..++ ++.+.++++|+++++++.+ . ++.+.++...++ ++|++||++
T Consensus 155 ~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~~~-~~d~vld~~ 229 (341)
T cd08290 155 ANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERLKALGADHVLTEEE---LRSLLATELLKSAPGG-RPKLALNCV 229 (341)
T ss_pred chhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHHHhcCCCEEEeCcc---cccccHHHHHHHHcCC-CceEEEECc
Confidence 6 9999999999999999 787777665 6688888899999998775 4 677888887777 899999999
Q ss_pred CChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC-------CCcHHHHHHHHHCCCCCC
Q 024295 165 GVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT-------KSDLPTLLDKCKNKEFKL 237 (269)
Q Consensus 165 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~g~~~~ 237 (269)
|+. .....+++++++ |+++.+|........++...++.++.++.+.....+.. ...+..+++++.++++.+
T Consensus 230 g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (341)
T cd08290 230 GGK-SATELARLLSPG-GTMVTYGGMSGQPVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKA 307 (341)
T ss_pred CcH-hHHHHHHHhCCC-CEEEEEeccCCCCcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccC
Confidence 986 667899999996 99999985432233455545566899999876543211 124778889999998765
Q ss_pred CcceeEEe---ehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 238 HQLLTHHV---KLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 238 ~~~~~~~~---~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
. ..+++ ++++++++++.+.++.. +|+|+++
T Consensus 308 ~--~~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~ 341 (341)
T cd08290 308 P--PVEKVTDDPLEEFKDALANALKGGGGGKQVLVM 341 (341)
T ss_pred C--cccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence 4 44567 99999999999887666 5999875
No 78
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.96 E-value=1.1e-27 Score=203.31 Aligned_cols=248 Identities=20% Similarity=0.205 Sum_probs=196.0
Q ss_pred cccCCceeeeecCeEEeee-eccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc-
Q 024295 15 LMLDSTSRMSVRGQKLYHI-FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG- 92 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~-~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G- 92 (269)
.+|+++..+.+ ||+|+.. ...|+|++|+.++.+.++++|+++++++++.+++.+++|++++...+.++++++|+|+|
T Consensus 71 ~vG~~v~~~~~-Gd~V~~~~~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~ 149 (327)
T PRK10754 71 KVGSGVKHIKV-GDRVVYAQSALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAA 149 (327)
T ss_pred EeCCCCCCCCC-CCEEEECCCCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeC
Confidence 35777777888 9999754 34589999999999999999999999999998889999999988888999999999997
Q ss_pred CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHH
Q 024295 93 LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE 172 (269)
Q Consensus 93 ~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~ 172 (269)
+|.+|++++++++.+|+ +|+++++++++.+.++++|++++++.++ .++.+.+++.+++.++|+++|+++++ ....
T Consensus 150 ~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~~~~-~~~~ 224 (327)
T PRK10754 150 AGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQVINYRE---ENIVERVKEITGGKKVRVVYDSVGKD-TWEA 224 (327)
T ss_pred CcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEEcCCC---CcHHHHHHHHcCCCCeEEEEECCcHH-HHHH
Confidence 59999999999999999 8999999999999999999999998876 77888888888877999999999875 7788
Q ss_pred HHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEE-eeec-cCCCCC----CcHHHHHHHHHCCCCCCCcceeEEee
Q 024295 173 ALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLK-GTTF-GGIKTK----SDLPTLLDKCKNKEFKLHQLLTHHVK 246 (269)
Q Consensus 173 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~----~~~~~~~~l~~~g~~~~~~~~~~~~~ 246 (269)
.+++++++ |+++.+|........++...+..++..+. .... ...... +.++++++++.+|++++..+..+.|+
T Consensus 225 ~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~ 303 (327)
T PRK10754 225 SLDCLQRR-GLMVSFGNASGPVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKFP 303 (327)
T ss_pred HHHHhccC-CEEEEEccCCCCCCCcCHHHHhccCceEEecceeecccCCHHHHHHHHHHHHHHHHCCCeeeecccCcEEc
Confidence 99999996 99999986642112233333322222111 1110 001111 23456889999999876555567899
Q ss_pred hhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 247 LEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 247 ~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
+++++++++.++++.. .|+|+.+
T Consensus 304 ~~~~~~a~~~~~~~~~~~~~~~~~ 327 (327)
T PRK10754 304 LKDAQRAHEILESRATQGSSLLIP 327 (327)
T ss_pred HHHHHHHHHHHHcCCCcceEEEeC
Confidence 9999999999987765 6999864
No 79
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.96 E-value=1.1e-26 Score=198.14 Aligned_cols=239 Identities=23% Similarity=0.322 Sum_probs=192.3
Q ss_pred cccCCceeeeecCeEEeee-------------------------e-------ccCcccceEeeccCceEEcCCCCCcccc
Q 024295 15 LMLDSTSRMSVRGQKLYHI-------------------------F-------SCSTWSEYMVIDANYVVKVDPSIDPSDA 62 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~-------------------------~-------~~g~~a~~~~v~~~~~~~vp~~~~~~~a 62 (269)
.+|+++.++++ ||+|+.. . .+|+|++|++++++.++++|++++++++
T Consensus 67 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~a 145 (339)
T cd08232 67 AVGPGVTGLAP-GQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRA 145 (339)
T ss_pred eeCCCCCcCCC-CCEEEEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHh
Confidence 35778888988 9999852 1 2589999999999999999999999998
Q ss_pred cccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCc
Q 024295 63 SFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNK 142 (269)
Q Consensus 63 a~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~ 142 (269)
+. ..++++|++++.....+ ++++|||.|+|.+|++++|+++.+|+++++++++++++.+.++++|+++++++++ .
T Consensus 146 a~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~---~ 220 (339)
T cd08232 146 AL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR---D 220 (339)
T ss_pred hh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc---h
Confidence 76 56888999988666666 8999999988999999999999999867899998888888889999999998765 3
Q ss_pred cHHHHHHhhh-CCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCC
Q 024295 143 SISELVKGIT-HGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKS 221 (269)
Q Consensus 143 ~~~~~i~~~~-~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (269)
++ .++. ...++|+++|++|+...++.++++++++ |+++.+|... .....+...++.+++++.+... ..+
T Consensus 221 ~~----~~~~~~~~~vd~vld~~g~~~~~~~~~~~L~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~ 290 (339)
T cd08232 221 PL----AAYAADKGDFDVVFEASGAPAALASALRVVRPG-GTVVQVGMLG-GPVPLPLNALVAKELDLRGSFR----FDD 290 (339)
T ss_pred hh----hhhhccCCCccEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC-CCccCcHHHHhhcceEEEEEec----CHH
Confidence 32 2222 2337999999998766789999999996 9999998544 2333444445558888877642 235
Q ss_pred cHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 222 DLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 222 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
.+.++++++.++.+++.+.+.+++++++++++++.+..+.. +|+|+++
T Consensus 291 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~ 339 (339)
T cd08232 291 EFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF 339 (339)
T ss_pred HHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence 68889999999998766667789999999999999877654 6999875
No 80
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.96 E-value=2e-26 Score=199.14 Aligned_cols=245 Identities=24% Similarity=0.308 Sum_probs=197.4
Q ss_pred ccccCCceeeeecCeEEeeee-------------------------------------ccCcccceEeeccC--ceEEcC
Q 024295 14 GLMLDSTSRMSVRGQKLYHIF-------------------------------------SCSTWSEYMVIDAN--YVVKVD 54 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~-------------------------------------~~g~~a~~~~v~~~--~~~~vp 54 (269)
-.+|+++..+++ ||+|+... .+|+|+||++++.. .++++|
T Consensus 66 ~~vG~~v~~~~~-Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP 144 (375)
T cd08282 66 EEVGSAVESLKV-GDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLP 144 (375)
T ss_pred EEeCCCCCcCCC-CCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECC
Confidence 335777777888 99987521 13889999999975 899999
Q ss_pred CCCCcc---cccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc
Q 024295 55 PSIDPS---DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT 131 (269)
Q Consensus 55 ~~~~~~---~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~ 131 (269)
++++++ +++.+.+++++||+++ ..++++++++|+|.|+|++|++++|+++..|+++|+++++++++.+.++++|+.
T Consensus 145 ~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~ 223 (375)
T cd08282 145 DRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI 223 (375)
T ss_pred CCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCe
Confidence 999998 5677888999999998 788999999999998899999999999999986788899999999999999984
Q ss_pred eeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChh-----------HHHHHHHHcccCCcEEEEEccCCCc-------
Q 024295 132 DFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS-----------LLSEALETTKVGKGKVIVIGVGVDA------- 193 (269)
Q Consensus 132 ~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~-----------~~~~~~~~l~~~~G~~v~~g~~~~~------- 193 (269)
.+++++ .++.+.+.+.++ .++|+++||+|.+. .+..++++++++ |+++.+|.....
T Consensus 224 -~v~~~~---~~~~~~i~~~~~-~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~g~~~~~~~~~~~~ 297 (375)
T cd08282 224 -PIDFSD---GDPVEQILGLEP-GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPG-GGIGIVGVYVAEDPGAGDA 297 (375)
T ss_pred -EeccCc---ccHHHHHHHhhC-CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcC-cEEEEEeccCCcccccccc
Confidence 567765 678888888777 48999999998763 478999999996 999988764310
Q ss_pred -----cccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295 194 -----MVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268 (269)
Q Consensus 194 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~ 268 (269)
...++...+..++..+.+... ..++.+..+++++.++++++..++++++++++++++|+.+.++...|+|++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~kvvv~ 374 (375)
T cd08282 298 AAKQGELSFDFGLLWAKGLSFGTGQA---PVKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRLETKVVIK 374 (375)
T ss_pred cccCccccccHHHHHhcCcEEEEecC---CchhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCCceEEEeC
Confidence 123455555557776665532 123568889999999998765568899999999999999887775599986
Q ss_pred C
Q 024295 269 I 269 (269)
Q Consensus 269 ~ 269 (269)
+
T Consensus 375 ~ 375 (375)
T cd08282 375 P 375 (375)
T ss_pred C
Confidence 4
No 81
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.96 E-value=1.5e-26 Score=196.86 Aligned_cols=240 Identities=23% Similarity=0.363 Sum_probs=195.2
Q ss_pred cccCCceeeeecCeEEeee---------------------------eccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295 15 LMLDSTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC 67 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~ 67 (269)
.+|+++..+++ ||+|++. ...|+|++|++++.+.++++|+++++.+++.+ .
T Consensus 66 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~ 143 (334)
T cd08234 66 AVGSKVTGFKV-GDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-E 143 (334)
T ss_pred EeCCCCCCCCC-CCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-h
Confidence 35778788888 9999761 13589999999999999999999999998876 6
Q ss_pred chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295 68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL 147 (269)
Q Consensus 68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~ 147 (269)
.+.++++++ ..++++++++|||+|+|.+|.+++++|+..|++.|+++++++++.+.++++|++.+++..+ .++...
T Consensus 144 ~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~ 219 (334)
T cd08234 144 PLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSR---EDPEAQ 219 (334)
T ss_pred HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCC---CCHHHH
Confidence 888999987 7889999999999988999999999999999944899999999999999999888888765 555444
Q ss_pred HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCCCCCCcHHHH
Q 024295 148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTL 226 (269)
Q Consensus 148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (269)
..+.+.++|+++|+++.......++++++++ |+++.+|.... ...+++...+..++.++.+.... .+.++++
T Consensus 220 --~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 292 (334)
T cd08234 220 --KEDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDARVSISPFEIFQKELTIIGSFIN----PYTFPRA 292 (334)
T ss_pred --HHhcCCCCcEEEECCCChHHHHHHHHHHhcC-CEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccC----HHHHHHH
Confidence 3344458999999998766888999999996 99999986543 23445555555578888876532 2568899
Q ss_pred HHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEe
Q 024295 227 LDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267 (269)
Q Consensus 227 ~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl 267 (269)
+++++++++++.+.+..++++++++++++.+.+...+|+|+
T Consensus 293 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi 333 (334)
T cd08234 293 IALLESGKIDVKGLVSHRLPLEEVPEALEGMRSGGALKVVV 333 (334)
T ss_pred HHHHHcCCCChhhhEEEEecHHHHHHHHHHHhcCCceEEEe
Confidence 99999999876665778899999999999988733368876
No 82
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.96 E-value=7.6e-27 Score=198.88 Aligned_cols=241 Identities=15% Similarity=0.188 Sum_probs=191.1
Q ss_pred ccccCCceeeeecCeEEeeee---ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCC-----C
Q 024295 14 GLMLDSTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEK-----G 85 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~-----~ 85 (269)
-.+|+++.++++ ||+|++.. ..|+|++|++++++.++++|+++++++++.+++.+++||+++....++++ +
T Consensus 71 ~~vG~~v~~~~~-Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g 149 (336)
T TIGR02817 71 VAVGDEVTLFKP-GDEVWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDK 149 (336)
T ss_pred EEeCCCCCCCCC-CCEEEEcCCCCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 346788888999 99998763 35899999999999999999999999999999999999999888888887 9
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295 86 SSVAVLGL-GTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC 163 (269)
Q Consensus 86 ~~vlI~G~-g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 163 (269)
++|||+|+ |++|++++|+|+.+ |+ +|+++++++++.+.++++|+++++++. .++.+.+++.. +.++|+++|+
T Consensus 150 ~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~g~~~~~~~~----~~~~~~i~~~~-~~~vd~vl~~ 223 (336)
T TIGR02817 150 RALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLELGAHHVIDHS----KPLKAQLEKLG-LEAVSYVFSL 223 (336)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHcCCCEEEECC----CCHHHHHHHhc-CCCCCEEEEc
Confidence 99999985 99999999999998 99 999999899999999999999998764 35667777653 3489999999
Q ss_pred cCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeecc--CCCC-------CCcHHHHHHHHHCCC
Q 024295 164 TGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFG--GIKT-------KSDLPTLLDKCKNKE 234 (269)
Q Consensus 164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~l~~~g~ 234 (269)
+++.......+++++++ |+++.++.. ..++...+..++.++.+..+. .... .+.++++++++.++.
T Consensus 224 ~~~~~~~~~~~~~l~~~-G~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (336)
T TIGR02817 224 THTDQHFKEIVELLAPQ-GRFALIDDP----AELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGK 298 (336)
T ss_pred CCcHHHHHHHHHHhccC-CEEEEEccc----ccccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHHCCC
Confidence 87666889999999996 999988532 233444444455666653322 1100 134678999999998
Q ss_pred CCCCcceeEEe---ehhhHHHHHHHhcCCCe-eeEEee
Q 024295 235 FKLHQLLTHHV---KLEEIDKAIQLLKQPDC-VKVLIT 268 (269)
Q Consensus 235 ~~~~~~~~~~~---~~~~~~~a~~~~~~~~~-~k~vl~ 268 (269)
+++. +.+.+ +++++++|++.+.++.. +|++++
T Consensus 299 l~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~ 334 (336)
T TIGR02817 299 IRTT--LAETFGTINAANLKRAHALIESGKARGKIVLE 334 (336)
T ss_pred eecc--chhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence 6542 34445 47899999999988765 588764
No 83
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.95 E-value=1.8e-26 Score=196.76 Aligned_cols=240 Identities=23% Similarity=0.338 Sum_probs=195.0
Q ss_pred cccCCceeeeecCeEEeee----------------------------eccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295 15 LMLDSTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLS 66 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~ 66 (269)
.+|+++..+.+ ||+|+.. ..+|+|+||+.++...++++|+++++++++.++
T Consensus 67 ~~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~ 145 (338)
T PRK09422 67 EVGPGVTSLKV-GDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSIT 145 (338)
T ss_pred EECCCCccCCC-CCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCCCCHHHeehhh
Confidence 35777778888 9999751 125899999999999999999999999999999
Q ss_pred cchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHH
Q 024295 67 CGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS 145 (269)
Q Consensus 67 ~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~ 145 (269)
+.++|||+++ ..++++++++|||+|+|++|++++++++.. |+ +|+++++++++.+.++++|++.+++++. ..++.
T Consensus 146 ~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~ 221 (338)
T PRK09422 146 CAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTINSKR--VEDVA 221 (338)
T ss_pred cchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCcEEecccc--cccHH
Confidence 9999999997 778899999999999999999999999984 99 8999999999999999999998888752 14566
Q ss_pred HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHH
Q 024295 146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPT 225 (269)
Q Consensus 146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (269)
+.+++..+ ++|.++++.++...+..++++++.+ |+++.+|.... ..+++...+..++.++.++... .++.++.
T Consensus 222 ~~v~~~~~--~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 294 (338)
T PRK09422 222 KIIQEKTG--GAHAAVVTAVAKAAFNQAVDAVRAG-GRVVAVGLPPE-SMDLSIPRLVLDGIEVVGSLVG---TRQDLEE 294 (338)
T ss_pred HHHHHhcC--CCcEEEEeCCCHHHHHHHHHhccCC-CEEEEEeeCCC-CceecHHHHhhcCcEEEEecCC---CHHHHHH
Confidence 77777655 6896655555556889999999996 99999986543 3344555566688888776532 2367889
Q ss_pred HHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 226 LLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 226 ~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
+++++.++++.. .+. .+++++++++|+.+.++.. +|+++++
T Consensus 295 ~~~l~~~g~l~~--~v~-~~~~~~~~~a~~~~~~~~~~gkvvv~~ 336 (338)
T PRK09422 295 AFQFGAEGKVVP--KVQ-LRPLEDINDIFDEMEQGKIQGRMVIDF 336 (338)
T ss_pred HHHHHHhCCCCc--cEE-EEcHHHHHHHHHHHHcCCccceEEEec
Confidence 999999998643 354 5899999999999988766 5888753
No 84
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.95 E-value=9.6e-27 Score=195.60 Aligned_cols=237 Identities=22% Similarity=0.294 Sum_probs=192.4
Q ss_pred ccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC
Q 024295 14 GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL 93 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~ 93 (269)
-.+|+++..+.+ ||+|++...+|+|++|+.++.++++++|+++++++++.+++.+.+||+++...... ++++|+|+|+
T Consensus 64 ~~~G~~v~~~~~-Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~ 141 (305)
T cd08270 64 ERAAADGSGPAV-GARVVGLGAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGA 141 (305)
T ss_pred EEeCCCCCCCCC-CCEEEEecCCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECC
Confidence 335777777888 99999887679999999999999999999999999999999999999998665555 5999999987
Q ss_pred -ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHH
Q 024295 94 -GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE 172 (269)
Q Consensus 94 -g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~ 172 (269)
|++|.+++++++..|+ +|+.+++++++.+.++++|++..++..+ ++.++ ++|+++|++|+. ....
T Consensus 142 ~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~-~~d~vl~~~g~~-~~~~ 207 (305)
T cd08270 142 SGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVVVGGS-----------ELSGA-PVDLVVDSVGGP-QLAR 207 (305)
T ss_pred CcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEeccc-----------cccCC-CceEEEECCCcH-HHHH
Confidence 9999999999999999 8999999999999999999876654321 12233 799999999986 7799
Q ss_pred HHHHcccCCcEEEEEccCCCccccchhHhhhh--CCceEEeeeccC-CCCCCcHHHHHHHHHCCCCCCCcceeEEeehhh
Q 024295 173 ALETTKVGKGKVIVIGVGVDAMVPLNVIALAC--GGRTLKGTTFGG-IKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEE 249 (269)
Q Consensus 173 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 249 (269)
++++++++ |+++.+|........++...+.. ++.++.++.... ....+.+..+++++.++++++. +.+++++++
T Consensus 208 ~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~ 284 (305)
T cd08270 208 ALELLAPG-GTVVSVGSSSGEPAVFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARLLGLVAAGRLDPR--IGWRGSWTE 284 (305)
T ss_pred HHHHhcCC-CEEEEEeccCCCcccccHHHHhcccccceEEEEEccCHHHHHHHHHHHHHHHHCCCccce--eccEEcHHH
Confidence 99999996 99999986543233455555553 588888876543 1112467889999999997643 667899999
Q ss_pred HHHHHHHhcCCCe-eeEEeeC
Q 024295 250 IDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 250 ~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++++++.+.++.. +|+|+++
T Consensus 285 ~~~a~~~~~~~~~~gkvvi~~ 305 (305)
T cd08270 285 IDEAAEALLARRFRGKAVLDV 305 (305)
T ss_pred HHHHHHHHHcCCCCceEEEeC
Confidence 9999999987766 5999875
No 85
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.95 E-value=2.9e-26 Score=197.43 Aligned_cols=244 Identities=22% Similarity=0.386 Sum_probs=193.3
Q ss_pred ccCCceeeeecCeEEeee------------------------e----ccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295 16 MLDSTSRMSVRGQKLYHI------------------------F----SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC 67 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~------------------------~----~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~ 67 (269)
+|+++..+++ ||+|++. . .+|+|+||++++...++++|++++++++++. .
T Consensus 88 vG~~v~~~~~-Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~ 165 (364)
T PLN02702 88 VGSEVKHLVV-GDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMC-E 165 (364)
T ss_pred ECCCCCCCCC-CCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhh-h
Confidence 5777777888 9999752 1 1589999999999999999999999988763 2
Q ss_pred chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295 68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL 147 (269)
Q Consensus 68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~ 147 (269)
++.++++++ ...++.++++|||+|+|++|++++++++..|+..++++++++++.+.++++|++.++++.. ...++.+.
T Consensus 166 ~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~ 243 (364)
T PLN02702 166 PLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVST-NIEDVESE 243 (364)
T ss_pred HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCc-ccccHHHH
Confidence 566688876 7788999999999999999999999999999967888988889999999999988765431 01456666
Q ss_pred HHhh--hCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHH
Q 024295 148 VKGI--THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPT 225 (269)
Q Consensus 148 i~~~--~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (269)
+.++ ..+.++|++||++|++..+..++++++++ |+++.+|.... ..++....+..+++++.+++.. +..+..
T Consensus 244 ~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~----~~~~~~ 317 (364)
T PLN02702 244 VEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGMGHN-EMTVPLTPAAAREVDVVGVFRY----RNTWPL 317 (364)
T ss_pred HHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCC-CCcccHHHHHhCccEEEEeccC----hHHHHH
Confidence 6554 22348999999999766889999999996 99999986542 2334455666789999886532 256888
Q ss_pred HHHHHHCCCCCCCcceeEEeeh--hhHHHHHHHhcCCCe-eeEEeeC
Q 024295 226 LLDKCKNKEFKLHQLLTHHVKL--EEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 226 ~~~l~~~g~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++++++++++.+.++++++|++ ++++++++.+.++.. +|+++.+
T Consensus 318 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~~ 364 (364)
T PLN02702 318 CLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFNL 364 (364)
T ss_pred HHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEeC
Confidence 9999999998766667788655 799999999887655 6999863
No 86
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.95 E-value=1.2e-26 Score=197.77 Aligned_cols=234 Identities=22% Similarity=0.403 Sum_probs=194.5
Q ss_pred ccCCceeeeecCeEEeee-----------------------------------eccCcccceEeeccCceEEcCCCCCcc
Q 024295 16 MLDSTSRMSVRGQKLYHI-----------------------------------FSCSTWSEYMVIDANYVVKVDPSIDPS 60 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~-----------------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~ 60 (269)
+|+++.++++ ||+|+.. ...|+|+||+.++.+.++++|++++++
T Consensus 68 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~ 146 (337)
T cd05283 68 VGSKVTKFKV-GDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSA 146 (337)
T ss_pred ECCCCcccCC-CCEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHH
Confidence 5778888888 9998621 335899999999999999999999999
Q ss_pred cccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC
Q 024295 61 DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP 140 (269)
Q Consensus 61 ~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~ 140 (269)
+++.+.+.+.+||+++.. ..++++++++|.|+|++|++++++++..|+ +++++++++++.+.++++|++.+++..+
T Consensus 147 ~aa~l~~~~~ta~~~~~~-~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~vi~~~~-- 222 (337)
T cd05283 147 AAAPLLCAGITVYSPLKR-NGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATKD-- 222 (337)
T ss_pred HhhhhhhHHHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEecCcc--
Confidence 999999999999998754 568999999999889999999999999999 9999999999999999999998888764
Q ss_pred CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCC
Q 024295 141 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTK 220 (269)
Q Consensus 141 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (269)
.++.+. . +.++|++||+++.+.....++++++++ |+++.+|.... ..+++...++.++.++.++.... .
T Consensus 223 -~~~~~~---~--~~~~d~v~~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~~---~ 291 (337)
T cd05283 223 -PEAMKK---A--AGSLDLIIDTVSASHDLDPYLSLLKPG-GTLVLVGAPEE-PLPVPPFPLIFGRKSVAGSLIGG---R 291 (337)
T ss_pred -hhhhhh---c--cCCceEEEECCCCcchHHHHHHHhcCC-CEEEEEeccCC-CCccCHHHHhcCceEEEEecccC---H
Confidence 333222 1 238999999999875578999999996 99999997653 33566666667999999987543 3
Q ss_pred CcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295 221 SDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT 268 (269)
Q Consensus 221 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~ 268 (269)
+.+..+++++.++++++ .+ ++++++++++||+.+.++.. +|+|++
T Consensus 292 ~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~~k~v~~ 337 (337)
T cd05283 292 KETQEMLDFAAEHGIKP--WV-EVIPMDGINEALERLEKGDVRYRFVLD 337 (337)
T ss_pred HHHHHHHHHHHhCCCcc--ce-EEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence 67899999999998654 34 68999999999999988776 698874
No 87
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=99.95 E-value=7.2e-28 Score=217.96 Aligned_cols=236 Identities=19% Similarity=0.259 Sum_probs=201.9
Q ss_pred CeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEE-cCChhHHHHHHHHH
Q 024295 27 GQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL-GLGTVGLGAVDGAR 105 (269)
Q Consensus 27 Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~-G~g~~G~~a~~la~ 105 (269)
|.||.++...-++|+.+.++.+++|.+|.+..+++|++.|+.|.|||++|+.+++.++|+++||+ |+|++|++|+.+|.
T Consensus 1495 GrRvM~mvpAksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiAL 1574 (2376)
T KOG1202|consen 1495 GRRVMGMVPAKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIAL 1574 (2376)
T ss_pred CcEEEEeeehhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHH
Confidence 88888877767899999999999999999999999999999999999999999999999999999 57999999999999
Q ss_pred HcCCCeEEEEcCCcchHHHHHh-CC---CceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCC
Q 024295 106 MHGAAKIIGIDKNPWKKEKGKA-FG---MTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK 181 (269)
Q Consensus 106 ~~g~~~v~~~~~~~~~~~~~~~-~g---~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~ 181 (269)
+.|+ .|+.+..++||++++.. |. ..++-|+++ .+|+..++.-|.|+|+|+|++....+ .++.+++|++-.
T Consensus 1575 a~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRd---tsFEq~vl~~T~GrGVdlVLNSLaeE-kLQASiRCLa~~- 1648 (2376)
T KOG1202|consen 1575 AHGC-TVFTTVGSAEKREFLLKRFPQLQETNFANSRD---TSFEQHVLWHTKGRGVDLVLNSLAEE-KLQASIRCLALH- 1648 (2376)
T ss_pred HcCC-EEEEecCcHHHHHHHHHhchhhhhhccccccc---ccHHHHHHHHhcCCCeeeehhhhhHH-HHHHHHHHHHhc-
Confidence 9999 99999999999999865 33 467888887 99999999999999999999999776 789999999995
Q ss_pred cEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCCC--CCCcHHHHHHHHHCCCC--CCCcceeEEeehhhHHHHHHH
Q 024295 182 GKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIK--TKSDLPTLLDKCKNKEF--KLHQLLTHHVKLEEIDKAIQL 256 (269)
Q Consensus 182 G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~--~~~~~~~~~~~~~~~~~a~~~ 256 (269)
|++..+|.... ...++.+.-|+ ||.+++|.-....- ..+.+.++..++++|.- .+.|+.+++|+-.++++||++
T Consensus 1649 GRFLEIGKfDLSqNspLGMavfL-kNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRf 1727 (2376)
T KOG1202|consen 1649 GRFLEIGKFDLSQNSPLGMAVFL-KNVSFHGILLDSVMEGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRF 1727 (2376)
T ss_pred CeeeeecceecccCCcchhhhhh-cccceeeeehhhhhcCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHH
Confidence 99999997664 34455554555 99999997654432 22456677777766533 266778999999999999999
Q ss_pred hcCCCee-eEEeeC
Q 024295 257 LKQPDCV-KVLITI 269 (269)
Q Consensus 257 ~~~~~~~-k~vl~~ 269 (269)
|.+++++ |+|+++
T Consensus 1728 MasGKHIGKVvikv 1741 (2376)
T KOG1202|consen 1728 MASGKHIGKVVIKV 1741 (2376)
T ss_pred HhccCccceEEEEE
Confidence 9999985 999863
No 88
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.95 E-value=4e-26 Score=194.93 Aligned_cols=242 Identities=26% Similarity=0.409 Sum_probs=194.2
Q ss_pred ccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccccc
Q 024295 16 MLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCG 68 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~ 68 (269)
+|+++..+++ ||+|+++. ..|+|++|++++.+.++++|++++.+.+ .+..+
T Consensus 72 ~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~a-~~~~~ 149 (341)
T cd05281 72 VGEGVTRVKV-GDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPPEIA-SIQEP 149 (341)
T ss_pred ECCCCCCCCC-CCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCHHHh-hhhhH
Confidence 5677777888 99998741 3489999999999999999999998555 45567
Q ss_pred hhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHH
Q 024295 69 FTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELV 148 (269)
Q Consensus 69 ~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i 148 (269)
+.++++++. ...+++++|||.|+|++|++++|+++..|.++|+++++++++.+.++++|+++++++++ .++. .+
T Consensus 150 ~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~ 223 (341)
T cd05281 150 LGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPRE---EDVV-EV 223 (341)
T ss_pred HHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCccc---ccHH-HH
Confidence 888888764 45578999999988999999999999999867888888889999999999998888775 6777 78
Q ss_pred HhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhH-hhhhCCceEEeeeccCCCCCCcHHHHH
Q 024295 149 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVI-ALACGGRTLKGTTFGGIKTKSDLPTLL 227 (269)
Q Consensus 149 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (269)
.+..++.++|++||++|.......++++++++ |+++.+|.... ...++.. ....++..+.+..... ..+.+.+++
T Consensus 224 ~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 299 (341)
T cd05281 224 KSVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILGLPPG-PVDIDLNNLVIFKGLTVQGITGRK--MFETWYQVS 299 (341)
T ss_pred HHHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCCC-CcccccchhhhccceEEEEEecCC--cchhHHHHH
Confidence 88777779999999998876789999999996 99999986543 2222222 2455788887765222 235678899
Q ss_pred HHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295 228 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269 (269)
Q Consensus 228 ~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~ 269 (269)
+++.++.+++.+.+..++++++++++|+.+.++..+|+|+++
T Consensus 300 ~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~gk~vv~~ 341 (341)
T cd05281 300 ALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGKCGKVVLYP 341 (341)
T ss_pred HHHHcCCCChhHheEEEecHHHHHHHHHHHhcCCCceEEecC
Confidence 999999987666677889999999999998877655999874
No 89
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.95 E-value=5.3e-26 Score=191.65 Aligned_cols=245 Identities=23% Similarity=0.286 Sum_probs=201.3
Q ss_pred ccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-C
Q 024295 16 MLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-G 94 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g 94 (269)
+|+++.++++ ||+|+++...|++++|+.++.+.++++|++++..+++.+++.+++|++++....+++++++|||+|+ |
T Consensus 69 ~g~~~~~~~~-G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g 147 (320)
T cd05286 69 VGPGVTGFKV-GDRVAYAGPPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAG 147 (320)
T ss_pred ECCCCCCCCC-CCEEEEecCCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCc
Confidence 5777778888 9999987535889999999999999999999999999999999999999888889999999999995 9
Q ss_pred hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHH
Q 024295 95 TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL 174 (269)
Q Consensus 95 ~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~ 174 (269)
++|++++++++.+|+ +|+++++++++.+.++++|++++++..+ .++.+.+..++++.++|+++|++++. ....++
T Consensus 148 ~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~~~~-~~~~~~ 222 (320)
T cd05286 148 GVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYRD---EDFVERVREITGGRGVDVVYDGVGKD-TFEGSL 222 (320)
T ss_pred hHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEeCCc---hhHHHHHHHHcCCCCeeEEEECCCcH-hHHHHH
Confidence 999999999999999 8999999999999999999988888775 67888888887777899999999885 778999
Q ss_pred HHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCC-----CcHHHHHHHHHCCCCCCCcceeEEeehhh
Q 024295 175 ETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTK-----SDLPTLLDKCKNKEFKLHQLLTHHVKLEE 249 (269)
Q Consensus 175 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 249 (269)
++++++ |+++.+|........++...+..+++++.+.....+... +.+.++++++.++.+.+. ..+.|++++
T Consensus 223 ~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~ 299 (320)
T cd05286 223 DSLRPR-GTLVSFGNASGPVPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKVE--IGKRYPLAD 299 (320)
T ss_pred HhhccC-cEEEEEecCCCCCCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCc--ccceEcHHH
Confidence 999996 999999865432223444444468888876543322211 234568888989886643 567899999
Q ss_pred HHHHHHHhcCCCe-eeEEeeC
Q 024295 250 IDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 250 ~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++++++.+.++.. .|+++++
T Consensus 300 ~~~a~~~~~~~~~~~~vv~~~ 320 (320)
T cd05286 300 AAQAHRDLESRKTTGKLLLIP 320 (320)
T ss_pred HHHHHHHHHcCCCCceEEEeC
Confidence 9999999887665 5888764
No 90
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.95 E-value=5.5e-26 Score=193.37 Aligned_cols=244 Identities=25% Similarity=0.371 Sum_probs=203.1
Q ss_pred cccCCceeeeecCeEEeeeec---------------------cCcccceEeeccCceEEcCCCCCcccccccccchhhhH
Q 024295 15 LMLDSTSRMSVRGQKLYHIFS---------------------CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGY 73 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~~---------------------~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~ 73 (269)
.+|.++.++++ ||+|++... .|+|++|+.++.+.++++|+++++.+++.+++.+.+|+
T Consensus 71 ~~G~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~ 149 (336)
T cd08276 71 AVGEGVTRFKV-GDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAW 149 (336)
T ss_pred EeCCCCcCCCC-CCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHH
Confidence 34667777888 999987641 57899999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhC
Q 024295 74 GAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITH 153 (269)
Q Consensus 74 ~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~ 153 (269)
+++...+.++++++|+|+|+|++|++++++++..|+ +|+++++++++.+.++++|.+.+++... ..++.+.+++.++
T Consensus 150 ~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~ 226 (336)
T cd08276 150 NALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINYRT--TPDWGEEVLKLTG 226 (336)
T ss_pred HHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEcCCc--ccCHHHHHHHHcC
Confidence 998888899999999999889999999999999999 8999999999999999999998887653 1457777888887
Q ss_pred CCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCC
Q 024295 154 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK 233 (269)
Q Consensus 154 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 233 (269)
+.++|+++|+++.. ....++++++++ |+++.+|.............++.+++++.+..... .+.+.++++++.++
T Consensus 227 ~~~~d~~i~~~~~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~ 301 (336)
T cd08276 227 GRGVDHVVEVGGPG-TLAQSIKAVAPG-GVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVGS---RAQFEAMNRAIEAH 301 (336)
T ss_pred CCCCcEEEECCChH-HHHHHHHhhcCC-CEEEEEccCCCCccCcCHHHHhhcceEEEEEecCc---HHHHHHHHHHHHcC
Confidence 77999999999865 778999999996 99999987654222344555667999999887543 35788899999888
Q ss_pred CCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 234 EFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
.+.. .+.+++++++++++++.+.++.. .|++++.
T Consensus 302 ~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 336 (336)
T cd08276 302 RIRP--VIDRVFPFEEAKEAYRYLESGSHFGKVVIRV 336 (336)
T ss_pred Cccc--ccCcEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence 7653 35678999999999998887665 5888763
No 91
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.95 E-value=5.3e-26 Score=192.38 Aligned_cols=211 Identities=21% Similarity=0.303 Sum_probs=175.7
Q ss_pred cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295 36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI 115 (269)
Q Consensus 36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~ 115 (269)
+|+|++|++++++.++++|++++.++++.+ .++.+++.+ ....+++++++|||+|+|.+|++++|+++.+|+ +|+++
T Consensus 109 ~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~~-~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~ 185 (319)
T cd08242 109 DGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALEI-LEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLV 185 (319)
T ss_pred CCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEE
Confidence 589999999999999999999999888864 455566654 577889999999999999999999999999999 79999
Q ss_pred cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccc
Q 024295 116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMV 195 (269)
Q Consensus 116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~ 195 (269)
++++++.+.++++|++.++++++ . +++.++|+++|++|+...+..++++++++ |+++..+... ...
T Consensus 186 ~~~~~~~~~~~~~g~~~~~~~~~---~---------~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~~~~~-~~~ 251 (319)
T cd08242 186 GRHSEKLALARRLGVETVLPDEA---E---------SEGGGFDVVVEATGSPSGLELALRLVRPR-GTVVLKSTYA-GPA 251 (319)
T ss_pred cCCHHHHHHHHHcCCcEEeCccc---c---------ccCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccC-CCC
Confidence 99999999999999988877653 1 23458999999998866788999999996 9999877544 244
Q ss_pred cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295 196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269 (269)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~ 269 (269)
.++...+..++.++.+... ..++++++++.++++++.+.+++.|++++++++|+.++++..+|+|+++
T Consensus 252 ~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~vi~~ 319 (319)
T cd08242 252 SFDLTKAVVNEITLVGSRC------GPFAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPGALKVLLRP 319 (319)
T ss_pred ccCHHHheecceEEEEEec------ccHHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCCceEEEeCC
Confidence 5566566678888887653 2388899999999987666788999999999999998876667999874
No 92
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.95 E-value=4.4e-26 Score=193.40 Aligned_cols=240 Identities=19% Similarity=0.208 Sum_probs=184.0
Q ss_pred CceeeeecCeEEeeee------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHh--cCCC-CCCeEE
Q 024295 19 STSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKE--AKVE-KGSSVA 89 (269)
Q Consensus 19 ~~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~--~~~~-~~~~vl 89 (269)
++.++.+ ||+|+... .+|+|++|++++++.++++|+++++++++.+++.+.+|++++... ..+. ++++||
T Consensus 73 ~~~~~~~-Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vl 151 (326)
T cd08289 73 NDPRFKP-GDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVL 151 (326)
T ss_pred CCCCCCC-CCEEEEcccccCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEE
Confidence 4456788 99998764 368999999999999999999999999999999999999887543 2333 478999
Q ss_pred EEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChh
Q 024295 90 VLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS 168 (269)
Q Consensus 90 I~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~ 168 (269)
|+|+ |++|++++|+|+.+|+ +|+++++++++.+.++++|++.+++.++ . ..+.+.+.. +.++|++||++|+.
T Consensus 152 I~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~-~~~~~~~~~-~~~~d~vld~~g~~- 224 (326)
T cd08289 152 VTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAKEVIPREE---L-QEESIKPLE-KQRWAGAVDPVGGK- 224 (326)
T ss_pred EEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCEEEcchh---H-HHHHHHhhc-cCCcCEEEECCcHH-
Confidence 9997 9999999999999999 8999999999999999999988888764 3 345565554 34899999999985
Q ss_pred HHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCC---CCcceeEEe
Q 024295 169 LLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFK---LHQLLTHHV 245 (269)
Q Consensus 169 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~---~~~~~~~~~ 245 (269)
.+...+++++++ |+++.+|.......+++...++.++.++.+...... ......++++.+.+ .+. ....+.+++
T Consensus 225 ~~~~~~~~l~~~-G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 301 (326)
T cd08289 225 TLAYLLSTLQYG-GSVAVSGLTGGGEVETTVFPFILRGVNLLGIDSVEC-PMELRRRIWRRLAT-DLKPTQLLNEIKQEI 301 (326)
T ss_pred HHHHHHHHhhcC-CEEEEEeecCCCCCCcchhhhhhccceEEEEEeEec-CchHHHHHHHHHHh-hcCccccccccceEe
Confidence 789999999996 999999976432334445556568999998753221 01123334333332 221 122357899
Q ss_pred ehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 246 KLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 246 ~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++++++++|+.+.+++. +|+|+++
T Consensus 302 ~l~~~~~a~~~~~~~~~~gkvvv~~ 326 (326)
T cd08289 302 TLDELPEALKQILQGRVTGRTVVKL 326 (326)
T ss_pred eHHHHHHHHHHHhcCcccceEEEeC
Confidence 99999999999988776 5988864
No 93
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.95 E-value=8.5e-26 Score=191.46 Aligned_cols=239 Identities=19% Similarity=0.226 Sum_probs=184.2
Q ss_pred CceeeeecCeEEeeee------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcC--CC-CCCeEE
Q 024295 19 STSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAK--VE-KGSSVA 89 (269)
Q Consensus 19 ~~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~--~~-~~~~vl 89 (269)
++..+++ ||+|++.. .+|+|++|++++++.++++|+++++++++.+++.+.+|++++....+ ++ .+++|+
T Consensus 73 ~~~~~~~-Gd~V~~~~~~~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vl 151 (325)
T cd05280 73 DDPRFRE-GDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVL 151 (325)
T ss_pred CCCCCCC-CCEEEEcccccCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEE
Confidence 3455778 99998652 36899999999999999999999999999999999999998765443 35 357999
Q ss_pred EEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChh
Q 024295 90 VLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS 168 (269)
Q Consensus 90 I~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~ 168 (269)
|+|+ |++|++++++|+.+|+ +|+++++++++.+.++++|++++++..+ . .....+...+.++|++||+++++
T Consensus 152 I~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~--~~~~~~~~~~~~~d~vi~~~~~~- 224 (325)
T cd05280 152 VTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASEVLDRED---L--LDESKKPLLKARWAGAIDTVGGD- 224 (325)
T ss_pred EECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEcchh---H--HHHHHHHhcCCCccEEEECCchH-
Confidence 9997 9999999999999999 7999999999999999999999887653 2 12233333344799999999885
Q ss_pred HHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCC---CcHHHHHHHHHCCCCCCCcceeEEe
Q 024295 169 LLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTK---SDLPTLLDKCKNKEFKLHQLLTHHV 245 (269)
Q Consensus 169 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~g~~~~~~~~~~~~ 245 (269)
.+..++++++++ |+++.+|.....+..++...++.++.++.+......... +.++.+.+++..+.. +.+.+++
T Consensus 225 ~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 300 (325)
T cd05280 225 VLANLLKQTKYG-GVVASCGNAAGPELTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWKPDLL---EIVVREI 300 (325)
T ss_pred HHHHHHHhhcCC-CEEEEEecCCCCccccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHhcCCc---cceeeEe
Confidence 789999999996 999999976532234555555568999988765433210 123344444555532 2367789
Q ss_pred ehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 246 KLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 246 ~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++++++++++.+..+.. +|+|+++
T Consensus 301 ~~~~~~~a~~~~~~~~~~gk~vv~~ 325 (325)
T cd05280 301 SLEELPEAIDRLLAGKHRGRTVVKI 325 (325)
T ss_pred cHHHHHHHHHHHhcCCcceEEEEeC
Confidence 99999999999988776 5998874
No 94
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.95 E-value=9.7e-26 Score=190.51 Aligned_cols=234 Identities=20% Similarity=0.321 Sum_probs=188.9
Q ss_pred eeeeecCeEEeeee------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-
Q 024295 21 SRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL- 93 (269)
Q Consensus 21 ~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~- 93 (269)
..+++ ||+|++.. .+|+|++|+.+++..++++|+++++++++.+++++.+||+++.....++++++|||+|+
T Consensus 74 ~~~~~-Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~ 152 (320)
T cd08243 74 GTFTP-GQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGT 152 (320)
T ss_pred CCCCC-CCEEEEecCCCCCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence 45778 99998764 24899999999999999999999999999999999999999988888999999999996
Q ss_pred ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHH
Q 024295 94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA 173 (269)
Q Consensus 94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~ 173 (269)
|++|++++|+|+..|+ +|+++++++++.+.++++|++++++. . .++.+.++++ +.++|+++|++++. .+...
T Consensus 153 g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~-~---~~~~~~i~~~--~~~~d~vl~~~~~~-~~~~~ 224 (320)
T cd08243 153 SSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVID-D---GAIAEQLRAA--PGGFDKVLELVGTA-TLKDS 224 (320)
T ss_pred ChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEec-C---ccHHHHHHHh--CCCceEEEECCChH-HHHHH
Confidence 9999999999999999 89999999999999999999888754 3 5677778777 44899999999975 78999
Q ss_pred HHHcccCCcEEEEEccCCC-cc-ccchhHhhh--hCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhh
Q 024295 174 LETTKVGKGKVIVIGVGVD-AM-VPLNVIALA--CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEE 249 (269)
Q Consensus 174 ~~~l~~~~G~~v~~g~~~~-~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 249 (269)
+++++++ |+++.+|.... .. ......... .++.++.++...... .+.+..++++++++.+++ .+.+.+++++
T Consensus 225 ~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 300 (320)
T cd08243 225 LRHLRPG-GIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGDVP-QTPLQELFDFVAAGHLDI--PPSKVFTFDE 300 (320)
T ss_pred HHHhccC-CEEEEEccCCCCcccCCcchhhhhhhccceEEEecchhhhh-HHHHHHHHHHHHCCceec--ccccEEcHHH
Confidence 9999996 99999986432 11 111112222 467777766543221 235778899999998664 3567899999
Q ss_pred HHHHHHHhcCCCe-eeEEe
Q 024295 250 IDKAIQLLKQPDC-VKVLI 267 (269)
Q Consensus 250 ~~~a~~~~~~~~~-~k~vl 267 (269)
++++++.+.++.. +|+++
T Consensus 301 ~~~a~~~~~~~~~~~kvvv 319 (320)
T cd08243 301 IVEAHAYMESNRAFGKVVV 319 (320)
T ss_pred HHHHHHHHHhCCCCCcEEe
Confidence 9999999887665 47775
No 95
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.95 E-value=1.6e-25 Score=191.11 Aligned_cols=239 Identities=21% Similarity=0.302 Sum_probs=190.0
Q ss_pred ccccCCceeeeecCeEEeeeec--------cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCC---
Q 024295 14 GLMLDSTSRMSVRGQKLYHIFS--------CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV--- 82 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~~--------~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~--- 82 (269)
-.+|+++..+++ ||+|+++.. +|+|++|++++.+.++++|+++++++++.+++++.+||+++....++
T Consensus 67 ~~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~ 145 (339)
T cd08249 67 VEVGSGVTRFKV-GDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLP 145 (339)
T ss_pred EEeCCCcCcCCC-CCEEEEEeccccCCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCC
Confidence 336777788888 999998753 48999999999999999999999999999999999999998766544
Q ss_pred -------CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCC
Q 024295 83 -------EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHG 154 (269)
Q Consensus 83 -------~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~ 154 (269)
+++++|||+|+ |++|++++++++..|+ +|+++. ++++.+.++++|++++++..+ .++.+.+++.+++
T Consensus 146 ~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~~g~~~v~~~~~---~~~~~~l~~~~~~ 220 (339)
T cd08249 146 PPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKSLGADAVFDYHD---PDVVEDIRAATGG 220 (339)
T ss_pred CCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHhcCCCEEEECCC---chHHHHHHHhcCC
Confidence 78999999996 8999999999999999 888887 568999999999999998876 7788888887764
Q ss_pred CCccEEEEccCChhHHHHHHHHccc--CCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC---------CCCCcH
Q 024295 155 MGVDYCFECTGVPSLLSEALETTKV--GKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI---------KTKSDL 223 (269)
Q Consensus 155 ~~~d~v~d~~g~~~~~~~~~~~l~~--~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 223 (269)
++|+++|++|.+..+..+++++++ + |+++.+|...... .+. .+..........+ .....+
T Consensus 221 -~~d~vl~~~g~~~~~~~~~~~l~~~~~-g~~v~~g~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (339)
T cd08249 221 -KLRYALDCISTPESAQLCAEALGRSGG-GKLVSLLPVPEET-EPR------KGVKVKFVLGYTVFGEIPEDREFGEVFW 291 (339)
T ss_pred -CeeEEEEeeccchHHHHHHHHHhccCC-CEEEEecCCCccc-cCC------CCceEEEEEeeeecccccccccchHHHH
Confidence 899999999985588999999999 8 9999998665321 111 2222222111110 112346
Q ss_pred HHHHHHHHCCCCCCCcceeEEee--hhhHHHHHHHhcCCC-e-eeEEeeC
Q 024295 224 PTLLDKCKNKEFKLHQLLTHHVK--LEEIDKAIQLLKQPD-C-VKVLITI 269 (269)
Q Consensus 224 ~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~a~~~~~~~~-~-~k~vl~~ 269 (269)
..+++++.++++.+. ...+++ +++++++|+.+..++ . .|+|+++
T Consensus 292 ~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~ 339 (339)
T cd08249 292 KYLPELLEEGKLKPH--PVRVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL 339 (339)
T ss_pred HHHHHHHHcCCccCC--CceecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence 778899999987764 334577 999999999998877 5 5999874
No 96
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.95 E-value=1.1e-25 Score=191.29 Aligned_cols=242 Identities=22% Similarity=0.242 Sum_probs=193.8
Q ss_pred cccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-
Q 024295 15 LMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL- 93 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~- 93 (269)
.+|+++..+++ ||+|++.. .|+|++|+.++.+.++++|++ +.+++.+++++.+||+++....+++++++++|+|+
T Consensus 74 ~vG~~v~~~~~-Gd~V~~~~-~g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~ 149 (329)
T cd08250 74 AVGEGVTDFKV-GDAVATMS-FGAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAA 149 (329)
T ss_pred EECCCCCCCCC-CCEEEEec-CcceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCc
Confidence 35777777888 99999765 488999999999999999997 35677788899999999888889999999999985
Q ss_pred ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHH
Q 024295 94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA 173 (269)
Q Consensus 94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~ 173 (269)
|.+|++++++++..|+ +|+++++++++.+.++++|++.+++..+ .++.+.+....+ .++|++||++|+. .+..+
T Consensus 150 g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~~~~~-~~vd~v~~~~g~~-~~~~~ 223 (329)
T cd08250 150 GGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCDRPINYKT---EDLGEVLKKEYP-KGVDVVYESVGGE-MFDTC 223 (329)
T ss_pred cHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCceEEeCCC---ccHHHHHHHhcC-CCCeEEEECCcHH-HHHHH
Confidence 9999999999999999 8999998999999999999988887765 667677766655 4899999999874 78999
Q ss_pred HHHcccCCcEEEEEccCCCc----------cccchhHhhhhCCceEEeeeccCCC--CCCcHHHHHHHHHCCCCCCCcce
Q 024295 174 LETTKVGKGKVIVIGVGVDA----------MVPLNVIALACGGRTLKGTTFGGIK--TKSDLPTLLDKCKNKEFKLHQLL 241 (269)
Q Consensus 174 ~~~l~~~~G~~v~~g~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~~ 241 (269)
+++++++ |+++.+|..... ...++. ..+.++.++.+.....+. ..+.+.++++++.++.+++....
T Consensus 224 ~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 301 (329)
T cd08250 224 VDNLALK-GRLIVIGFISGYQSGTGPSPVKGATLPP-KLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDP 301 (329)
T ss_pred HHHhccC-CeEEEEecccCCcccCcccccccccccH-HHhhcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECC
Confidence 9999996 999999865421 012222 334588899887654321 12457788899999987664334
Q ss_pred eEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295 242 THHVKLEEIDKAIQLLKQPDC-VKVLIT 268 (269)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~~~~-~k~vl~ 268 (269)
.+.++++++++|++.+..+.. +|++++
T Consensus 302 ~~~~~~~~~~~a~~~~~~~~~~~kvvv~ 329 (329)
T cd08250 302 TRFRGLESVADAVDYLYSGKNIGKVVVE 329 (329)
T ss_pred ccccCHHHHHHHHHHHHcCCCCceEEeC
Confidence 556999999999999887665 588864
No 97
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.95 E-value=2.1e-25 Score=188.22 Aligned_cols=243 Identities=22% Similarity=0.298 Sum_probs=200.1
Q ss_pred ccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-C
Q 024295 16 MLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-G 94 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g 94 (269)
+|.++..+++ ||+|+++..+|+|++|+.++++.++++|+++++.+++.++.++.+|++++.+...+.++++++|+|+ |
T Consensus 72 vg~~~~~~~~-Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~ 150 (323)
T cd05276 72 VGPGVTGWKV-GDRVCALLAGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGAS 150 (323)
T ss_pred eCCCCCCCCC-CCEEEEecCCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcC
Confidence 5667777888 9999988767899999999999999999999999999999999999999888888999999999996 8
Q ss_pred hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHH
Q 024295 95 TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL 174 (269)
Q Consensus 95 ~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~ 174 (269)
++|++++++++..|+ +++++++++++.+.++++|++.+++... .++.+.+.....+.++|+++|++|+. .....+
T Consensus 151 ~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~ 225 (323)
T cd05276 151 GVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVAINYRT---EDFAEEVKEATGGRGVDVILDMVGGD-YLARNL 225 (323)
T ss_pred hHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCc---hhHHHHHHHHhCCCCeEEEEECCchH-HHHHHH
Confidence 999999999999999 8999999889999998899888888775 67777777776666899999999976 578899
Q ss_pred HHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCC-------CcHHHHHHHHHCCCCCCCcceeEEeeh
Q 024295 175 ETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTK-------SDLPTLLDKCKNKEFKLHQLLTHHVKL 247 (269)
Q Consensus 175 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~g~~~~~~~~~~~~~~ 247 (269)
++++++ |+++.+|........++...++.++.++.++........ +.+.++++++.++++++ ..++.|++
T Consensus 226 ~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 302 (323)
T cd05276 226 RALAPD-GRLVLIGLLGGAKAELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIRP--VIDKVFPL 302 (323)
T ss_pred HhhccC-CEEEEEecCCCCCCCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCccC--CcceEEcH
Confidence 999996 999999865432334555555568999998875542110 23566788888888653 36778999
Q ss_pred hhHHHHHHHhcCCCe-eeEEe
Q 024295 248 EEIDKAIQLLKQPDC-VKVLI 267 (269)
Q Consensus 248 ~~~~~a~~~~~~~~~-~k~vl 267 (269)
++++++++.+.++.. +|+++
T Consensus 303 ~~~~~a~~~~~~~~~~~kvv~ 323 (323)
T cd05276 303 EEAAEAHRRMESNEHIGKIVL 323 (323)
T ss_pred HHHHHHHHHHHhCCCcceEeC
Confidence 999999999887655 47663
No 98
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.94 E-value=3e-25 Score=188.05 Aligned_cols=238 Identities=18% Similarity=0.216 Sum_probs=185.8
Q ss_pred CceeeeecCeEEeeee------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHh--cCCCCCC-eEE
Q 024295 19 STSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKE--AKVEKGS-SVA 89 (269)
Q Consensus 19 ~~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~--~~~~~~~-~vl 89 (269)
++..+++ ||+|++.. .+|++++|+.++.+.++++|+++++++++.+++.+.+|++++... +.+.+++ +|+
T Consensus 72 ~~~~~~~-Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vl 150 (323)
T TIGR02823 72 EDPRFRE-GDEVIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVL 150 (323)
T ss_pred CCCCCCC-CCEEEEccCCCCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEE
Confidence 4556788 99998764 358999999999999999999999999999999999998876433 3488898 999
Q ss_pred EEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChh
Q 024295 90 VLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS 168 (269)
Q Consensus 90 I~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~ 168 (269)
|+|+ |++|.+++++|+.+|+ +++++++++++.+.++++|++.+++..+ .+. .++...++ ++|+++|++|+.
T Consensus 151 I~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~~--~~~~~~~~-~~d~vld~~g~~- 222 (323)
T TIGR02823 151 VTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGASEVIDRED---LSP--PGKPLEKE-RWAGAVDTVGGH- 222 (323)
T ss_pred EEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcEEEcccc---HHH--HHHHhcCC-CceEEEECccHH-
Confidence 9996 9999999999999999 7888888888889999999988887654 332 44455555 699999999976
Q ss_pred HHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC---CCcHHHHHHHHHCCCCCCCcceeEEe
Q 024295 169 LLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPTLLDKCKNKEFKLHQLLTHHV 245 (269)
Q Consensus 169 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~ 245 (269)
.+...+++++++ |+++.+|.......+++...++.++.++.+........ .+.+..+.+++..+.+.. . .+.+
T Consensus 223 ~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~ 298 (323)
T TIGR02823 223 TLANVLAQLKYG-GAVAACGLAGGPDLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLKPRNLES--I-TREI 298 (323)
T ss_pred HHHHHHHHhCCC-CEEEEEcccCCCCccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhhcCCCcC--c-eeee
Confidence 678999999996 99999997643333444455656899998875432211 112455666676777543 2 4589
Q ss_pred ehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 246 KLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 246 ~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++++++++|+.+.+++. +|+|++.
T Consensus 299 ~l~~~~~a~~~~~~~~~~~k~vv~~ 323 (323)
T TIGR02823 299 TLEELPEALEQILAGQHRGRTVVDV 323 (323)
T ss_pred cHHHHHHHHHHHhCCCccceEEEeC
Confidence 99999999999988776 5888763
No 99
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.94 E-value=2e-25 Score=185.13 Aligned_cols=234 Identities=25% Similarity=0.368 Sum_probs=184.3
Q ss_pred cccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295 13 NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG 92 (269)
Q Consensus 13 ~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G 92 (269)
+-.+|+++.++++ ||+|+++ +.|++|+.++.+.++++|+++++++++.+ +++++||+++. ..++++++++||+|
T Consensus 32 V~~vG~~v~~~~~-Gd~V~~~---~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~~-~~~~~~g~~vlI~g 105 (277)
T cd08255 32 VVEVGSGVTGFKP-GDRVFCF---GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGVR-DAEPRLGERVAVVG 105 (277)
T ss_pred EEEeCCCCCCCCC-CCEEEec---CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHHH-hcCCCCCCEEEEEC
Confidence 3345778888888 9999876 36999999999999999999999999988 78999999874 78999999999999
Q ss_pred CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC-CceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295 93 LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG-MTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS 171 (269)
Q Consensus 93 ~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~ 171 (269)
+|++|++++++|+.+|+++|+++++++++.+.++++| ++.+++..+ ...++.++|++||+++......
T Consensus 106 ~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~d~vl~~~~~~~~~~ 174 (277)
T cd08255 106 LGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTA-----------DEIGGRGADVVIEASGSPSALE 174 (277)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccch-----------hhhcCCCCCEEEEccCChHHHH
Confidence 8999999999999999944999999999999999999 555554431 1123448999999998776889
Q ss_pred HHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCC---------CCCcHHHHHHHHHCCCCCCCccee
Q 024295 172 EALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIK---------TKSDLPTLLDKCKNKEFKLHQLLT 242 (269)
Q Consensus 172 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~g~~~~~~~~~ 242 (269)
..+++++++ |+++.+|..... .......+..++.++.+....... ..+.++++++++.+++++. .+.
T Consensus 175 ~~~~~l~~~-g~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~--~~~ 250 (277)
T cd08255 175 TALRLLRDR-GRVVLVGWYGLK-PLLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLEA--LIT 250 (277)
T ss_pred HHHHHhcCC-cEEEEEeccCCC-ccccHHHHHhccCeEEeecccccccccccccccccccHHHHHHHHHcCCccc--ccc
Confidence 999999996 999999876532 111223344466677766543210 1256889999999998553 367
Q ss_pred EEeehhhHHHHHHHhcCC--CeeeEEe
Q 024295 243 HHVKLEEIDKAIQLLKQP--DCVKVLI 267 (269)
Q Consensus 243 ~~~~~~~~~~a~~~~~~~--~~~k~vl 267 (269)
+++++++++++|+.+.++ ..+|+++
T Consensus 251 ~~~~~~~~~~a~~~~~~~~~~~~k~~~ 277 (277)
T cd08255 251 HRVPFEDAPEAYRLLFEDPPECLKVVL 277 (277)
T ss_pred CccCHHHHHHHHHHHHcCCccceeeeC
Confidence 789999999999999877 3368764
No 100
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.94 E-value=2.5e-25 Score=189.39 Aligned_cols=235 Identities=28% Similarity=0.389 Sum_probs=190.4
Q ss_pred ccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccccc
Q 024295 16 MLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCG 68 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~ 68 (269)
+|.++..+.+ ||+|++.. .+|+|++|+.++.+.++++|+++++.+++.+++.
T Consensus 69 ~g~~~~~~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~ 147 (334)
T PRK13771 69 VGENVKGFKP-GDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCV 147 (334)
T ss_pred eCCCCccCCC-CCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcccch
Confidence 4667677888 99998753 1589999999999999999999999999999999
Q ss_pred hhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295 69 FTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL 147 (269)
Q Consensus 69 ~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~ 147 (269)
+.+|++++... .++++++|+|+|+ |++|++++++++..|+ +++++++++++.+.++++ ++++++.. ++.+.
T Consensus 148 ~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~ 219 (334)
T PRK13771 148 TGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY-ADYVIVGS-----KFSEE 219 (334)
T ss_pred HHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH-HHHhcCch-----hHHHH
Confidence 99999998665 8999999999997 9999999999999999 899999899999998888 77666543 34555
Q ss_pred HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCCCCCCcHHHH
Q 024295 148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTL 226 (269)
Q Consensus 148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (269)
++++ + ++|+++|++|+. ....++++++++ |+++.+|.... ...+......+.++.++.+... ..+++++.+
T Consensus 220 v~~~--~-~~d~~ld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 291 (334)
T PRK13771 220 VKKI--G-GADIVIETVGTP-TLEESLRSLNMG-GKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHIS---ATKRDVEEA 291 (334)
T ss_pred HHhc--C-CCcEEEEcCChH-HHHHHHHHHhcC-CEEEEEeccCCCCCcccCHHHHHhcccEEEEecC---CCHHHHHHH
Confidence 6654 3 799999999986 678999999996 99999997643 1212333334558888887642 234678999
Q ss_pred HHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 227 LDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 227 ~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++++.++.++ +.+++++++++++++|+.+.++.. +|+++.+
T Consensus 292 ~~~~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 333 (334)
T PRK13771 292 LKLVAEGKIK--PVIGAEVSLSEIDKALEELKDKSRIGKILVKP 333 (334)
T ss_pred HHHHHcCCCc--ceEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence 9999999865 347788999999999999887655 5888763
No 101
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.94 E-value=9.7e-25 Score=185.90 Aligned_cols=242 Identities=21% Similarity=0.305 Sum_probs=199.8
Q ss_pred ccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccccc
Q 024295 16 MLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCG 68 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~ 68 (269)
+|.++..+++ ||+|+... ..|++++|++++.+.++++|+++++++++.+++.
T Consensus 72 ~G~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~ 150 (342)
T cd08266 72 VGPGVTNVKP-GQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLT 150 (342)
T ss_pred eCCCCCCCCC-CCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhH
Confidence 5677777888 99998652 2578999999999999999999999999999999
Q ss_pred hhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295 69 FTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL 147 (269)
Q Consensus 69 ~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~ 147 (269)
+.+|++++....++.++++++|+|+ +.+|++++++++..|+ +++.+++++++.+.+++++.+.+++..+ .++.+.
T Consensus 151 ~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 226 (342)
T cd08266 151 FLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVIDYRK---EDFVRE 226 (342)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCeEEecCC---hHHHHH
Confidence 9999999888889999999999987 7999999999999999 8999999988998888888877777665 667777
Q ss_pred HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHH
Q 024295 148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLL 227 (269)
Q Consensus 148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (269)
+.+.+.+.++|++++++|.. .+...+++++++ |+++.++........++....+.++.++.+..... ...+.+++
T Consensus 227 ~~~~~~~~~~d~~i~~~g~~-~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 301 (342)
T cd08266 227 VRELTGKRGVDVVVEHVGAA-TWEKSLKSLARG-GRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMGT---KAELDEAL 301 (342)
T ss_pred HHHHhCCCCCcEEEECCcHH-HHHHHHHHhhcC-CEEEEEecCCCCCCCcCHHHHhhcceEEEEEecCC---HHHHHHHH
Confidence 77776656899999999875 678999999996 99999986654333444444456888888876432 35688899
Q ss_pred HHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 228 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 228 ~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++++++.+++ .+++.|++++++++++.+.++.. .|+++++
T Consensus 302 ~~l~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 342 (342)
T cd08266 302 RLVFRGKLKP--VIDSVFPLEEAAEAHRRLESREQFGKIVLTP 342 (342)
T ss_pred HHHHcCCccc--ceeeeEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence 9999998553 47788999999999998877655 5988864
No 102
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.94 E-value=1.1e-24 Score=185.19 Aligned_cols=229 Identities=23% Similarity=0.317 Sum_probs=185.6
Q ss_pred cccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295 15 LMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS 66 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~ 66 (269)
.+|+++.++++ ||+|+... .+|+|++|+.++.+.++++|+++++.+++.++
T Consensus 72 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~ 150 (329)
T cd08298 72 AVGPGVTRFSV-GDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLL 150 (329)
T ss_pred EECCCCCCCcC-CCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCCCHHHhhHhh
Confidence 35777777888 99996521 25899999999999999999999999999999
Q ss_pred cchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH
Q 024295 67 CGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE 146 (269)
Q Consensus 67 ~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~ 146 (269)
+++.+||+++ ..+++++++++||+|+|++|++++++++..|+ +|+++++++++.+.++++|++++++..+ .
T Consensus 151 ~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~---- 221 (329)
T cd08298 151 CAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADWAGDSDD---L---- 221 (329)
T ss_pred hhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcEEeccCc---c----
Confidence 9999999998 88999999999999999999999999999999 9999999999999999999988887653 1
Q ss_pred HHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHH
Q 024295 147 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTL 226 (269)
Q Consensus 147 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (269)
.+.++|+++++.+....+..++++++++ |+++.+|........++... +.++..+.++... ..+.+.++
T Consensus 222 ------~~~~vD~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~---~~~~~~~~ 290 (329)
T cd08298 222 ------PPEPLDAAIIFAPVGALVPAALRAVKKG-GRVVLAGIHMSDIPAFDYEL-LWGEKTIRSVANL---TRQDGEEF 290 (329)
T ss_pred ------CCCcccEEEEcCCcHHHHHHHHHHhhcC-CEEEEEcCCCCCCCccchhh-hhCceEEEEecCC---CHHHHHHH
Confidence 1237999999877666889999999996 99999885432122233333 3367777665432 23568889
Q ss_pred HHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEe
Q 024295 227 LDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI 267 (269)
Q Consensus 227 ~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl 267 (269)
+++++++.+++ ..++|+++++++|++.+++++. +|+|+
T Consensus 291 ~~l~~~~~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~~v~ 329 (329)
T cd08298 291 LKLAAEIPIKP---EVETYPLEEANEALQDLKEGRIRGAAVL 329 (329)
T ss_pred HHHHHcCCCCc---eEEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence 99999998764 2578999999999999988766 57764
No 103
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.94 E-value=7.9e-25 Score=183.40 Aligned_cols=242 Identities=20% Similarity=0.267 Sum_probs=193.6
Q ss_pred cccCCceeeeecCeEEeeee--ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295 15 LMLDSTSRMSVRGQKLYHIF--SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG 92 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~--~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G 92 (269)
.+|+++.++++ ||+|+++. ..|+|++|++++++.++++|+++++++++.+++.+++||+++ +...++++++++|+|
T Consensus 51 ~~G~~v~~~~~-Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-~~~~~~~g~~vli~~ 128 (303)
T cd08251 51 AVGPHVTRLAV-GDEVIAGTGESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-ARAGLAKGEHILIQT 128 (303)
T ss_pred EECCCCCCCCC-CCEEEEecCCCCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-HhcCCCCCCEEEEec
Confidence 46788888888 99998764 348999999999999999999999999999999999999987 578999999999996
Q ss_pred -CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295 93 -LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS 171 (269)
Q Consensus 93 -~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~ 171 (269)
.|++|++++|+++.+|+ +|+++++++++.+.++++|++.+++... .++.+.+..++++.++|+++|++++. ...
T Consensus 129 ~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~~d~v~~~~~~~-~~~ 203 (303)
T cd08251 129 ATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYVE---EDFEEEIMRLTGGRGVDVVINTLSGE-AIQ 203 (303)
T ss_pred CCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCC---ccHHHHHHHHcCCCCceEEEECCcHH-HHH
Confidence 59999999999999999 8999998889999999999999998876 77888888888777999999999764 778
Q ss_pred HHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCCC------CCCcHHHHHHHHHCCCCCCCcceeEE
Q 024295 172 EALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIK------TKSDLPTLLDKCKNKEFKLHQLLTHH 244 (269)
Q Consensus 172 ~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~g~~~~~~~~~~~ 244 (269)
..+++++++ |+++.+|.... ....++...+. ++.++....+.... ..+.+.++++++.++.++. ...+.
T Consensus 204 ~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~ 279 (303)
T cd08251 204 KGLNCLAPG-GRYVEIAMTALKSAPSVDLSVLS-NNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELRP--TVSRI 279 (303)
T ss_pred HHHHHhccC-cEEEEEeccCCCccCccChhHhh-cCceEEEEehHHhhhhCHHHHHHHHHHHHHHHHCCCccC--CCceE
Confidence 999999996 99999986542 22233333333 44544433321110 0134667888898998653 36678
Q ss_pred eehhhHHHHHHHhcCCCe-eeEEe
Q 024295 245 VKLEEIDKAIQLLKQPDC-VKVLI 267 (269)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~-~k~vl 267 (269)
+++++++++++.+.++.. +|+++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~iv~ 303 (303)
T cd08251 280 FPFDDIGEAYRYLSDRENIGKVVV 303 (303)
T ss_pred EcHHHHHHHHHHHHhCCCcceEeC
Confidence 999999999999887665 47763
No 104
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.94 E-value=4.6e-25 Score=183.24 Aligned_cols=242 Identities=19% Similarity=0.296 Sum_probs=194.9
Q ss_pred cccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-
Q 024295 15 LMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL- 93 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~- 93 (269)
.+|+++.++++ ||+|++... |+|++|+.++.+.++++|+++++++++.+++.+.+|++++.....+.++++|+|+|+
T Consensus 37 ~~G~~~~~~~~-Gd~V~~~~~-g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~ 114 (288)
T smart00829 37 RVGPGVTGLAV-GDRVMGLAP-GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAA 114 (288)
T ss_pred eeCCCCcCCCC-CCEEEEEcC-CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCC
Confidence 35777778888 999998753 899999999999999999999999999999999999999878889999999999984
Q ss_pred ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC--ceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295 94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM--TDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS 171 (269)
Q Consensus 94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~ 171 (269)
|.+|++++++++..|+ +|+++++++++.+.++++|+ +.++++.+ .++.+.+.+..++.++|+++|++++. ...
T Consensus 115 ~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~ 189 (288)
T smart00829 115 GGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGIPDDHIFSSRD---LSFADEILRATGGRGVDVVLNSLAGE-FLD 189 (288)
T ss_pred cHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCChhheeeCCC---ccHHHHHHHHhCCCCcEEEEeCCCHH-HHH
Confidence 9999999999999999 89999999999999999998 77887766 67878888877766899999999864 778
Q ss_pred HHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCCC-----CCCcHHHHHHHHHCCCCCCCcceeEEe
Q 024295 172 EALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIK-----TKSDLPTLLDKCKNKEFKLHQLLTHHV 245 (269)
Q Consensus 172 ~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~g~~~~~~~~~~~~ 245 (269)
..+++++++ |+++.+|.... ....++...+ .++.++.+....... ..+.+..+++++.++++++. ..+.|
T Consensus 190 ~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 265 (288)
T smart00829 190 ASLRCLAPG-GRFVEIGKRDIRDNSQLGMAPF-RRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPL--PVTVF 265 (288)
T ss_pred HHHHhccCC-cEEEEEcCcCCccccccchhhh-cCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCc--CceEE
Confidence 899999996 99999986542 1223333332 366776665432211 11346678888988986543 45679
Q ss_pred ehhhHHHHHHHhcCCCe-eeEEe
Q 024295 246 KLEEIDKAIQLLKQPDC-VKVLI 267 (269)
Q Consensus 246 ~~~~~~~a~~~~~~~~~-~k~vl 267 (269)
++++++++++.+..+.. +|+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~ivv 288 (288)
T smart00829 266 PISDVEDAFRYMQQGKHIGKVVL 288 (288)
T ss_pred cHHHHHHHHHHHhcCCCcceEeC
Confidence 99999999999887655 47653
No 105
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.94 E-value=5.3e-25 Score=185.19 Aligned_cols=208 Identities=21% Similarity=0.349 Sum_probs=175.9
Q ss_pred cccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295 15 LMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS 66 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~ 66 (269)
.+|+++..+++ ||+|++.. ..|+|++|++++...++++|+++++++++ +.
T Consensus 69 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~ 146 (306)
T cd08258 69 EVGPDVEGWKV-GDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA-LT 146 (306)
T ss_pred EECCCcCcCCC-CCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH-hh
Confidence 35788888888 99998753 24899999999999999999999999887 66
Q ss_pred cchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc--CCcchHHHHHhCCCceeeCCCCCCCccH
Q 024295 67 CGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID--KNPWKKEKGKAFGMTDFINPDDEPNKSI 144 (269)
Q Consensus 67 ~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~--~~~~~~~~~~~~g~~~v~~~~~~~~~~~ 144 (269)
.++++|++++...++++++++|||.|+|.+|.+++|+++..|+ +|+.+. +++++.+.++++|++++ ++.. .++
T Consensus 147 ~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~~-~~~~---~~~ 221 (306)
T cd08258 147 EPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADAV-NGGE---EDL 221 (306)
T ss_pred chHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCccc-CCCc---CCH
Confidence 6889999999888999999999998889999999999999999 787763 34557788889999888 7776 788
Q ss_pred HHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHH
Q 024295 145 SELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLP 224 (269)
Q Consensus 145 ~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (269)
.+.+.+..++.++|++||++|+...+...+++++++ |+++.+|........++...++++++++.|++++. +++++
T Consensus 222 ~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~ 297 (306)
T cd08258 222 AELVNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQVGIFGPLAASIDVERIIQKELSVIGSRSST---PASWE 297 (306)
T ss_pred HHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccCCCCcccCHHHHhhcCcEEEEEecCc---hHhHH
Confidence 888888777678999999998766888999999996 99999998653345667777778999999998754 47799
Q ss_pred HHHHHHHCC
Q 024295 225 TLLDKCKNK 233 (269)
Q Consensus 225 ~~~~l~~~g 233 (269)
++++++++|
T Consensus 298 ~~~~~~~~~ 306 (306)
T cd08258 298 TALRLLASG 306 (306)
T ss_pred HHHHHHhcC
Confidence 999998875
No 106
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.94 E-value=8e-25 Score=185.05 Aligned_cols=245 Identities=21% Similarity=0.306 Sum_probs=201.2
Q ss_pred ccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-C
Q 024295 16 MLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-G 94 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g 94 (269)
+|+++.++++ ||+|++...+|++++|++++...++++|+++++.+++.+++++++|++++.+...++++++++|+|+ |
T Consensus 72 vg~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~ 150 (325)
T TIGR02824 72 VGEGVSRWKV-GDRVCALVAGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGAS 150 (325)
T ss_pred eCCCCCCCCC-CCEEEEccCCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcc
Confidence 5667777888 9999987666899999999999999999999999999999999999999888899999999999985 9
Q ss_pred hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHH
Q 024295 95 TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL 174 (269)
Q Consensus 95 ~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~ 174 (269)
++|.+++++++..|+ +|+++.+++++.+.++++|.+.+++... .++.+.++...++.++|+++++++.. .....+
T Consensus 151 ~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~ 225 (325)
T TIGR02824 151 GIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIAINYRE---EDFVEVVKAETGGKGVDVILDIVGGS-YLNRNI 225 (325)
T ss_pred hHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCc---hhHHHHHHHHcCCCCeEEEEECCchH-HHHHHH
Confidence 999999999999999 8999998898888888899888887765 66777888777666899999999875 778899
Q ss_pred HHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC-CC------CCcHHHHHHHHHCCCCCCCcceeEEeeh
Q 024295 175 ETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI-KT------KSDLPTLLDKCKNKEFKLHQLLTHHVKL 247 (269)
Q Consensus 175 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 247 (269)
++++++ |+++.+|........++...++.++.++.+...... .. ...+.++++++.++.++. .+++.+++
T Consensus 226 ~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 302 (325)
T TIGR02824 226 KALALD-GRIVQIGFQGGRKAELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVRP--VIDKVFPL 302 (325)
T ss_pred HhhccC-cEEEEEecCCCCcCCCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCcccC--ccccEEeH
Confidence 999996 999999865432225555556569999998875542 11 123456778888888643 36778999
Q ss_pred hhHHHHHHHhcCCCe-eeEEeeC
Q 024295 248 EEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 248 ~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++++++++.+.++.. +|++++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~v~~~ 325 (325)
T TIGR02824 303 EDAAQAHALMESGDHIGKIVLTV 325 (325)
T ss_pred HHHHHHHHHHHhCCCcceEEEeC
Confidence 999999999887665 5888753
No 107
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.94 E-value=1.2e-24 Score=185.44 Aligned_cols=242 Identities=19% Similarity=0.205 Sum_probs=193.1
Q ss_pred ccCCceeeeecCeEEeeee---ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCC-----CCe
Q 024295 16 MLDSTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEK-----GSS 87 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~-----~~~ 87 (269)
+|+++..+++ ||+|+... .+|+|++|+.++.+.++++|++++.++++.+++.+.+||+++...+.+++ +++
T Consensus 74 ~G~~v~~~~~-Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~ 152 (336)
T cd08252 74 VGSEVTLFKV-GDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKT 152 (336)
T ss_pred cCCCCCCCCC-CCEEEEcCCCCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCE
Confidence 5677777888 99998753 35899999999999999999999999999999999999999888888887 999
Q ss_pred EEEEcC-ChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295 88 VAVLGL-GTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG 165 (269)
Q Consensus 88 vlI~G~-g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g 165 (269)
|+|+|+ |++|++++++++.+| + +|+++++++++.+.++++|++++++.. .++.+.++... +.++|++||+++
T Consensus 153 vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~i~~~~-~~~~d~vl~~~~ 226 (336)
T cd08252 153 LLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKELGADHVINHH----QDLAEQLEALG-IEPVDYIFCLTD 226 (336)
T ss_pred EEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHhcCCcEEEeCC----ccHHHHHHhhC-CCCCCEEEEccC
Confidence 999985 999999999999999 7 999999999999999999998888775 24556665443 348999999998
Q ss_pred ChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC---CC------CCcHHHHHHHHHCCCCC
Q 024295 166 VPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI---KT------KSDLPTLLDKCKNKEFK 236 (269)
Q Consensus 166 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~l~~~g~~~ 236 (269)
.+..+..++++++++ |+++.+|... ..++...+..++.++.+..+... .. .+.+.++++++.++.+.
T Consensus 227 ~~~~~~~~~~~l~~~-g~~v~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 302 (336)
T cd08252 227 TDQHWDAMAELIAPQ-GHICLIVDPQ---EPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLK 302 (336)
T ss_pred cHHHHHHHHHHhcCC-CEEEEecCCC---CcccchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEe
Confidence 766889999999996 9999998653 23444445457888887554321 00 13467889999999876
Q ss_pred CCcc-eeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295 237 LHQL-LTHHVKLEEIDKAIQLLKQPDC-VKVLIT 268 (269)
Q Consensus 237 ~~~~-~~~~~~~~~~~~a~~~~~~~~~-~k~vl~ 268 (269)
+... ..+.+++++++++++.+.++.. .|++++
T Consensus 303 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~ 336 (336)
T cd08252 303 TTLTETLGPINAENLREAHALLESGKTIGKIVLE 336 (336)
T ss_pred cceeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence 4311 1234799999999999988776 488763
No 108
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.94 E-value=1.4e-24 Score=184.46 Aligned_cols=235 Identities=27% Similarity=0.411 Sum_probs=190.0
Q ss_pred ccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccccc
Q 024295 16 MLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCG 68 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~ 68 (269)
+|+++..+.+ ||+|+++. ..|+|++|++++...++++|+++++++++.++++
T Consensus 69 ~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~ 147 (332)
T cd08259 69 VGEGVERFKP-GDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACV 147 (332)
T ss_pred ECCCCccCCC-CCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhhccH
Confidence 4777777888 99998764 1589999999999999999999999999999999
Q ss_pred hhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295 69 FTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL 147 (269)
Q Consensus 69 ~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~ 147 (269)
+.+||+++.. +.+++++++||+|+ |++|++++++++..|. +|+++++++++.+.+++++.+.+++.. . +.+.
T Consensus 148 ~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~ 220 (332)
T cd08259 148 VGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGS----K-FSED 220 (332)
T ss_pred HHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCcEEEecH----H-HHHH
Confidence 9999999876 88999999999986 9999999999999999 899999888888888888888777553 3 5556
Q ss_pred HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHH
Q 024295 148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLL 227 (269)
Q Consensus 148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (269)
+.+.. ++|++++++|.. ....++++++++ |+++.+|........++......++.++.++.. ...+.+.+++
T Consensus 221 ~~~~~---~~d~v~~~~g~~-~~~~~~~~~~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 292 (332)
T cd08259 221 VKKLG---GADVVIELVGSP-TIEESLRSLNKG-GRLVLIGNVTPDPAPLRPGLLILKEIRIIGSIS---ATKADVEEAL 292 (332)
T ss_pred HHhcc---CCCEEEECCChH-HHHHHHHHhhcC-CEEEEEcCCCCCCcCCCHHHHHhCCcEEEEecC---CCHHHHHHHH
Confidence 65543 799999999876 578899999995 999999865532222233333347777776632 1235688899
Q ss_pred HHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295 228 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT 268 (269)
Q Consensus 228 ~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~ 268 (269)
+++.++.++ +.+++++++++++++|+.+.++.. +|++++
T Consensus 293 ~~~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 332 (332)
T cd08259 293 KLVKEGKIK--PVIDRVVSLEDINEALEDLKSGKVVGRIVLK 332 (332)
T ss_pred HHHHcCCCc--cceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence 999999865 347789999999999999987765 588764
No 109
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.94 E-value=6.4e-25 Score=186.50 Aligned_cols=233 Identities=24% Similarity=0.265 Sum_probs=188.2
Q ss_pred eeeecCeEEeeeeccCcccceEeecc-CceEEcCCCCC--cccccc-cccchhhhHHHHHHhcCCCCCCeEEEEcC-Chh
Q 024295 22 RMSVRGQKLYHIFSCSTWSEYMVIDA-NYVVKVDPSID--PSDASF-LSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTV 96 (269)
Q Consensus 22 ~~~~~Gd~v~~~~~~g~~a~~~~v~~-~~~~~vp~~~~--~~~aa~-~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~ 96 (269)
.+++ ||+|+++ ++|++|+.++. +.++++|++++ +.+++. +++++.+||+++.....+.++++|||+|+ |++
T Consensus 83 ~~~~-Gd~V~~~---~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~i 158 (329)
T cd05288 83 DFKV-GDLVSGF---LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAV 158 (329)
T ss_pred CCCC-CCEEecc---cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchH
Confidence 5788 9999875 47999999999 99999999985 445555 88899999999888888999999999985 999
Q ss_pred HHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHH
Q 024295 97 GLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE 175 (269)
Q Consensus 97 G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~ 175 (269)
|++++++++..|+ +|+++++++++.+.+++ +|+++++++++ .++.+.+.++++ .++|+++|++|+. .+..+++
T Consensus 159 g~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~v~~~~~-~~~d~vi~~~g~~-~~~~~~~ 232 (329)
T cd05288 159 GSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEELGFDAAINYKT---PDLAEALKEAAP-DGIDVYFDNVGGE-ILDAALT 232 (329)
T ss_pred HHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhhcCCceEEecCC---hhHHHHHHHhcc-CCceEEEEcchHH-HHHHHHH
Confidence 9999999999999 89999989999999988 99999998876 678888887775 4899999999975 7899999
Q ss_pred HcccCCcEEEEEccCCCccc-----cchhHhhhhCCceEEeeeccCCCC--CCcHHHHHHHHHCCCCCCCcceeEEeehh
Q 024295 176 TTKVGKGKVIVIGVGVDAMV-----PLNVIALACGGRTLKGTTFGGIKT--KSDLPTLLDKCKNKEFKLHQLLTHHVKLE 248 (269)
Q Consensus 176 ~l~~~~G~~v~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 248 (269)
+++++ |+++.+|....... .++....+.++.++.+.....+.. .+.+.++++++.++.+++.+ ...++++
T Consensus 233 ~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~--~~~~~l~ 309 (329)
T cd05288 233 LLNKG-GRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYRE--DVVEGLE 309 (329)
T ss_pred hcCCC-ceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccc--cccccHH
Confidence 99996 99999986543111 123444556889988876443211 13477788999999977653 3458999
Q ss_pred hHHHHHHHhcCCCe-eeEEe
Q 024295 249 EIDKAIQLLKQPDC-VKVLI 267 (269)
Q Consensus 249 ~~~~a~~~~~~~~~-~k~vl 267 (269)
+++++++.+.++.. +|+++
T Consensus 310 ~~~~a~~~~~~~~~~gkvvv 329 (329)
T cd05288 310 NAPEAFLGLFTGKNTGKLVV 329 (329)
T ss_pred HHHHHHHHHhcCCCccceeC
Confidence 99999999887655 47663
No 110
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.94 E-value=1.5e-24 Score=183.22 Aligned_cols=244 Identities=21% Similarity=0.289 Sum_probs=198.6
Q ss_pred ccCCceeeeecCeEEeeee-----ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEE
Q 024295 16 MLDSTSRMSVRGQKLYHIF-----SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAV 90 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~-----~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI 90 (269)
+|+++.++++ ||+|++.. ..|++++|+.++++.++++|+++++++++.+++++.+|++++....++.++++++|
T Consensus 72 ~g~~~~~~~~-Gd~v~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI 150 (325)
T cd08253 72 VGEGVDGLKV-GDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLV 150 (325)
T ss_pred eCCCCCCCCC-CCEEEEeccccCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEE
Confidence 5777778888 99998875 35899999999999999999999999999999999999999888889999999999
Q ss_pred EcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH
Q 024295 91 LGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL 169 (269)
Q Consensus 91 ~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~ 169 (269)
+|+ |.+|++++++++..|+ +|+++++++++.+.++++|++++++... .++.+.+.++.++.++|+++|+++.. .
T Consensus 151 ~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~-~ 225 (325)
T cd08253 151 HGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFNYRA---EDLADRILAATAGQGVDVIIEVLANV-N 225 (325)
T ss_pred EcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC---cCHHHHHHHHcCCCceEEEEECCchH-H
Confidence 985 9999999999999999 8999999999999998899988888765 67778888777666899999999886 6
Q ss_pred HHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC---CCcHHHHHHHHHCCCCCCCcceeEEee
Q 024295 170 LSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPTLLDKCKNKEFKLHQLLTHHVK 246 (269)
Q Consensus 170 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~ 246 (269)
....+++++++ |+++.+|... ...+++...++.++.++.+........ .+.+..+.+++..+.++. ..+++++
T Consensus 226 ~~~~~~~l~~~-g~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~ 301 (325)
T cd08253 226 LAKDLDVLAPG-GRIVVYGSGG-LRGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALRP--VIAREYP 301 (325)
T ss_pred HHHHHHhhCCC-CEEEEEeecC-CcCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCccC--ccccEEc
Confidence 68889999996 9999998654 233454555455778777765322111 123556667788887654 3667899
Q ss_pred hhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 247 LEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 247 ~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
+++++++++.+.++.. +|+++++
T Consensus 302 ~~~~~~~~~~~~~~~~~~kvv~~~ 325 (325)
T cd08253 302 LEEAAAAHEAVESGGAIGKVVLDP 325 (325)
T ss_pred HHHHHHHHHHHHcCCCcceEEEeC
Confidence 9999999999877655 5888763
No 111
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.94 E-value=1.9e-24 Score=183.66 Aligned_cols=234 Identities=24% Similarity=0.383 Sum_probs=188.4
Q ss_pred ccCCceeeeecCeEEee----------------------------eeccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295 16 MLDSTSRMSVRGQKLYH----------------------------IFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC 67 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~----------------------------~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~ 67 (269)
+|.++.++++ ||+|+. +...|+|++|+.++.+.++++|+++++++++.+.+
T Consensus 68 ~g~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~ 146 (330)
T cd08245 68 VGAGVEGRKV-GDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLC 146 (330)
T ss_pred ECCCCccccc-CCEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhh
Confidence 5667777888 999872 22358999999999999999999999999999999
Q ss_pred chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295 68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL 147 (269)
Q Consensus 68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~ 147 (269)
.+.+||+++.. .+++++++|||+|+|.+|++++++++..|. +|+++++++++.+.++++|++.+++... .+....
T Consensus 147 ~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~ 221 (330)
T cd08245 147 AGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGA---ELDEQA 221 (330)
T ss_pred hHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccCC---cchHHh
Confidence 99999998754 789999999999988899999999999999 8999999999999998899988887654 333222
Q ss_pred HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHH
Q 024295 148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLL 227 (269)
Q Consensus 148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (269)
..+ ++|+++|+++.......++++++++ |+++.++........+....++.++.++.++.... .+.+..++
T Consensus 222 ----~~~-~~d~vi~~~~~~~~~~~~~~~l~~~-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 292 (330)
T cd08245 222 ----AAG-GADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHGG---RADLQEAL 292 (330)
T ss_pred ----ccC-CCCEEEECCCcHHHHHHHHHhcccC-CEEEEECCCCCCccccchHHHHhCCCEEEEeccCC---HHHHHHHH
Confidence 223 7999999988766889999999996 99999986543222333444666788887776432 35688899
Q ss_pred HHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEe
Q 024295 228 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI 267 (269)
Q Consensus 228 ~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl 267 (269)
+++.++.+++ ..+++++++++++|+.+.++.. +|+|+
T Consensus 293 ~ll~~~~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~~v~ 330 (330)
T cd08245 293 DFAAEGKVKP---MIETFPLDQANEAYERMEKGDVRFRFVL 330 (330)
T ss_pred HHHHcCCCcc---eEEEEcHHHHHHHHHHHHcCCCCcceeC
Confidence 9999998764 3468999999999999887765 47664
No 112
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.93 E-value=1.7e-24 Score=180.07 Aligned_cols=243 Identities=21% Similarity=0.245 Sum_probs=195.5
Q ss_pred ccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc-
Q 024295 14 GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG- 92 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G- 92 (269)
-.+|+++.++++ ||+|++.. .|+|+||+.++.+.++++|+++++.+++.+++++.+|+.++.+...++++++|+|+|
T Consensus 40 ~~~g~~~~~~~~-Gd~V~~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~ 117 (293)
T cd05195 40 TRVGSGVTGLKV-GDRVMGLA-PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAA 117 (293)
T ss_pred EeecCCccCCCC-CCEEEEEe-cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecC
Confidence 335777778888 99999875 489999999999999999999999999999899999999988888999999999997
Q ss_pred CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC--CceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHH
Q 024295 93 LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG--MTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLL 170 (269)
Q Consensus 93 ~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g--~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~ 170 (269)
.|++|++++++++..|+ +++++++++++.+.+++.+ ++.+++..+ .++.+.+++.+++.++|+++|+++++ .+
T Consensus 118 ~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~-~~ 192 (293)
T cd05195 118 AGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRELGGPVDHIFSSRD---LSFADGILRATGGRGVDVVLNSLSGE-LL 192 (293)
T ss_pred CCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhCCCcceEeecCc---hhHHHHHHHHhCCCCceEEEeCCCch-HH
Confidence 59999999999999999 8999998889999998887 677888765 67888888888777899999999987 88
Q ss_pred HHHHHHcccCCcEEEEEccCCCc-cccchhHhhhhCCceEEeeeccCCC------CCCcHHHHHHHHHCCCCCCCcceeE
Q 024295 171 SEALETTKVGKGKVIVIGVGVDA-MVPLNVIALACGGRTLKGTTFGGIK------TKSDLPTLLDKCKNKEFKLHQLLTH 243 (269)
Q Consensus 171 ~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~g~~~~~~~~~~ 243 (269)
..++++++++ |+++.+|..... ...+....+. ++.++......... ..+.+..+++++.+++++ +..++
T Consensus 193 ~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 268 (293)
T cd05195 193 RASWRCLAPF-GRFVEIGKRDILSNSKLGMRPFL-RNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLK--PLPPT 268 (293)
T ss_pred HHHHHhcccC-ceEEEeeccccccCCccchhhhc-cCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcc--cCCCe
Confidence 9999999996 999999865431 1223333332 56666654432211 013467788899999865 44667
Q ss_pred EeehhhHHHHHHHhcCCCe-eeEEe
Q 024295 244 HVKLEEIDKAIQLLKQPDC-VKVLI 267 (269)
Q Consensus 244 ~~~~~~~~~a~~~~~~~~~-~k~vl 267 (269)
.++++++.++++.+..+.. +|+++
T Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~ivv 293 (293)
T cd05195 269 VVPSASEIDAFRLMQSGKHIGKVVL 293 (293)
T ss_pred eechhhHHHHHHHHhcCCCCceecC
Confidence 8999999999999887665 47663
No 113
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.93 E-value=8.8e-25 Score=173.52 Aligned_cols=243 Identities=21% Similarity=0.252 Sum_probs=192.0
Q ss_pred cccCCceeeeecCeEEeeeeccCcccceEeeccCceEEc--CC--CCCccc-ccccccchhhhHHHHHHhcCCCCCCeEE
Q 024295 15 LMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKV--DP--SIDPSD-ASFLSCGFTTGYGAAWKEAKVEKGSSVA 89 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~v--p~--~~~~~~-aa~~~~~~~~a~~~l~~~~~~~~~~~vl 89 (269)
++..+-+++.+ ||.|.++. +|.||.+++++...+. |. +.++.- ..++.++.+|||..+.+....++|++|+
T Consensus 83 Vi~S~~~~~~~-GD~v~g~~---gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~ 158 (343)
T KOG1196|consen 83 VIDSGHPNYKK-GDLVWGIV---GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVF 158 (343)
T ss_pred EEecCCCCCCc-CceEEEec---cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEE
Confidence 34567788999 99999887 5999999988655444 33 233222 2336789999999999999999999999
Q ss_pred EEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh
Q 024295 90 VLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP 167 (269)
Q Consensus 90 I~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~ 167 (269)
|-|+ |++|+.+.|+|+.+|+ +|++++.++||.+.++. +|.+..+||++ +.+..+.++...+. ++|+.||.+|+.
T Consensus 159 VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~d~afNYK~--e~~~~~aL~r~~P~-GIDiYfeNVGG~ 234 (343)
T KOG1196|consen 159 VSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE--ESDLSAALKRCFPE-GIDIYFENVGGK 234 (343)
T ss_pred EeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCCccceeccC--ccCHHHHHHHhCCC-cceEEEeccCcH
Confidence 9986 9999999999999999 99999999999999876 79999999997 34888888888777 999999999997
Q ss_pred hHHHHHHHHcccCCcEEEEEccCCC--ccccch---hHhhhhCCceEEeeeccCCCC--CCcHHHHHHHHHCCCCCCCcc
Q 024295 168 SLLSEALETTKVGKGKVIVIGVGVD--AMVPLN---VIALACGGRTLKGTTFGGIKT--KSDLPTLLDKCKNKEFKLHQL 240 (269)
Q Consensus 168 ~~~~~~~~~l~~~~G~~v~~g~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~~~ 240 (269)
.++..+..++.. |+++.+|.-+. .+.+.. ....+.|++++.|+....+.. .+.+..+..++++|+|+...-
T Consensus 235 -~lDavl~nM~~~-gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~ikegKI~y~ed 312 (343)
T KOG1196|consen 235 -MLDAVLLNMNLH-GRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYIKEGKITYVED 312 (343)
T ss_pred -HHHHHHHhhhhc-cceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHHhcCceEEehh
Confidence 779999999995 99999996653 122211 123456888998876555432 244677888999999887643
Q ss_pred eeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 241 LTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
+. -.+++.++||.-|.+++. +|.++.+
T Consensus 313 i~--~Glen~P~A~vglf~GkNvGKqiv~v 340 (343)
T KOG1196|consen 313 IA--DGLENGPSALVGLFHGKNVGKQLVKV 340 (343)
T ss_pred HH--HHHhccHHHHHHHhccCcccceEEEe
Confidence 33 469999999998888776 6888763
No 114
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.93 E-value=6.1e-24 Score=179.43 Aligned_cols=244 Identities=25% Similarity=0.393 Sum_probs=199.4
Q ss_pred ccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-C
Q 024295 16 MLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-G 94 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g 94 (269)
+|+++.++++ ||+|+++...|++++|+.++.+.++++|++++..+++.+..++.+|++++.....++++++++|+|+ |
T Consensus 72 ~g~~~~~~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~ 150 (323)
T cd08241 72 VGEGVTGFKV-GDRVVALTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAG 150 (323)
T ss_pred eCCCCCCCCC-CCEEEEecCCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCc
Confidence 4666677888 9999988645899999999999999999999999888888899999999877888999999999997 9
Q ss_pred hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHH
Q 024295 95 TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL 174 (269)
Q Consensus 95 ~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~ 174 (269)
++|++++++++..|+ .|+.+++++++.+.++++|++.+++... .++.+.+...+++.++|.++|++|+. ....++
T Consensus 151 ~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~~d~v~~~~g~~-~~~~~~ 225 (323)
T cd08241 151 GVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVIDYRD---PDLRERVKALTGGRGVDVVYDPVGGD-VFEASL 225 (323)
T ss_pred hHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceeeecCC---ccHHHHHHHHcCCCCcEEEEECccHH-HHHHHH
Confidence 999999999999999 8999998999999999999888887776 67888888887767899999999874 778899
Q ss_pred HHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC------CCcHHHHHHHHHCCCCCCCcceeEEeehh
Q 024295 175 ETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT------KSDLPTLLDKCKNKEFKLHQLLTHHVKLE 248 (269)
Q Consensus 175 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 248 (269)
++++++ |+++.+|........++....+.++.++.+.....+.. .+.+.++++++.++.+. +..++.|+++
T Consensus 226 ~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 302 (323)
T cd08241 226 RSLAWG-GRLLVIGFASGEIPQIPANLLLLKNISVVGVYWGAYARREPELLRANLAELFDLLAEGKIR--PHVSAVFPLE 302 (323)
T ss_pred HhhccC-CEEEEEccCCCCcCcCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHHHHHHHHCCCcc--cccceEEcHH
Confidence 999996 99999986543111133334455888988876554321 13467788999999864 3467789999
Q ss_pred hHHHHHHHhcCCCe-eeEEee
Q 024295 249 EIDKAIQLLKQPDC-VKVLIT 268 (269)
Q Consensus 249 ~~~~a~~~~~~~~~-~k~vl~ 268 (269)
++.++++.+.++.. +|++++
T Consensus 303 ~~~~~~~~~~~~~~~~~vvv~ 323 (323)
T cd08241 303 QAAEALRALADRKATGKVVLT 323 (323)
T ss_pred HHHHHHHHHHhCCCCCcEEeC
Confidence 99999998876655 577763
No 115
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.93 E-value=5.8e-24 Score=179.94 Aligned_cols=239 Identities=23% Similarity=0.283 Sum_probs=194.4
Q ss_pred ccCCceeeeecCeEEeeee-----ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEE
Q 024295 16 MLDSTSRMSVRGQKLYHIF-----SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAV 90 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~-----~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI 90 (269)
+|+++..+++ ||+|++.. ..|+|++|+.++.+.++++|+++++.+++.+++.+.+|++++.+..+++++++++|
T Consensus 72 ~G~~~~~~~~-Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli 150 (326)
T cd08272 72 VGEGVTRFRV-GDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLI 150 (326)
T ss_pred eCCCCCCCCC-CCEEEEccCCcCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 5677777888 99999775 25889999999999999999999999999999999999999888899999999999
Q ss_pred EcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH
Q 024295 91 LGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL 169 (269)
Q Consensus 91 ~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~ 169 (269)
+|+ |++|++++++++..|+ +|++++++ ++.+.++++|.+.+++... . +.+.+.+.+++.++|+++|++++. .
T Consensus 151 ~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~-~~~~~~~~~~~~~~d~v~~~~~~~-~ 223 (326)
T cd08272 151 HGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADPIIYYRE---T-VVEYVAEHTGGRGFDVVFDTVGGE-T 223 (326)
T ss_pred EcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCCEEEecch---h-HHHHHHHhcCCCCCcEEEECCChH-H
Confidence 985 9999999999999999 89998887 8888898899988888765 5 778888887777899999999885 6
Q ss_pred HHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccC--CC------CCCcHHHHHHHHHCCCCCCCcce
Q 024295 170 LSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG--IK------TKSDLPTLLDKCKNKEFKLHQLL 241 (269)
Q Consensus 170 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~l~~~g~~~~~~~~ 241 (269)
....+++++++ |+++.++... ..++. ....++.++.+..... .. ..+.+..+++++.++.++. .+
T Consensus 224 ~~~~~~~l~~~-g~~v~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~ 296 (326)
T cd08272 224 LDASFEAVALY-GRVVSILGGA--THDLA--PLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLRP--LL 296 (326)
T ss_pred HHHHHHHhccC-CEEEEEecCC--ccchh--hHhhhcceEEEEEcccccccccchhhHHHHHHHHHHHHHCCCccc--cc
Confidence 78899999996 9999998653 22222 2235788877765332 10 1234677888888888653 33
Q ss_pred e-EEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 242 T-HHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 242 ~-~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
+ +.+++++++++++.+.++.. .|+++++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 326 (326)
T cd08272 297 DPRTFPLEEAAAAHARLESGSARGKIVIDV 326 (326)
T ss_pred ccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence 4 78999999999999877655 5888864
No 116
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.93 E-value=1.1e-23 Score=178.32 Aligned_cols=245 Identities=24% Similarity=0.348 Sum_probs=196.5
Q ss_pred ccCCceeeeecCeEEeeee-----ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEE
Q 024295 16 MLDSTSRMSVRGQKLYHIF-----SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAV 90 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~-----~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI 90 (269)
+|+++..+++ ||+|+++. ..|++++|+.++.+.++++|+++++++++.+++++.+|++++.....+.++++++|
T Consensus 72 ~G~~~~~~~~-Gd~V~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli 150 (328)
T cd08268 72 VGAGVTGFAV-GDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLI 150 (328)
T ss_pred eCCCCCcCCC-CCEEEeccccccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4677777888 99998764 24889999999999999999999999999999999999999888889999999999
Q ss_pred EcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH
Q 024295 91 LGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL 169 (269)
Q Consensus 91 ~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~ 169 (269)
+|+ |.+|++++++++..|+ +++.+++++++.+.++++|.+.+++... ..+.+.+.+...+.++|++++++++. .
T Consensus 151 ~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~-~ 225 (328)
T cd08268 151 TAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVIVTDE---EDLVAEVLRITGGKGVDVVFDPVGGP-Q 225 (328)
T ss_pred ecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEecCC---ccHHHHHHHHhCCCCceEEEECCchH-h
Confidence 986 9999999999999999 8999998999999998899888888775 67777777777666899999999885 7
Q ss_pred HHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC-C----CcHHHHHHHHHCCCCCCCcceeEE
Q 024295 170 LSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT-K----SDLPTLLDKCKNKEFKLHQLLTHH 244 (269)
Q Consensus 170 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~l~~~g~~~~~~~~~~~ 244 (269)
...++++++++ |+++.+|........++....+.++.++.+........ . +.+..+.+++.++.+.. ...+.
T Consensus 226 ~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 302 (328)
T cd08268 226 FAKLADALAPG-GTLVVYGALSGEPTPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLASGALKP--VVDRV 302 (328)
T ss_pred HHHHHHhhccC-CEEEEEEeCCCCCCCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHHHHHHHCCCCcC--CcccE
Confidence 78899999996 99999986543223344443456888888876543211 1 12444555676777553 35678
Q ss_pred eehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 245 VKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
++++++.++++.+..+.. +|++++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~vv~~~ 328 (328)
T cd08268 303 FPFDDIVEAHRYLESGQQIGKIVVTP 328 (328)
T ss_pred EcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 999999999999887665 5888763
No 117
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.93 E-value=1.3e-23 Score=180.13 Aligned_cols=246 Identities=21% Similarity=0.231 Sum_probs=181.1
Q ss_pred cccCCce-eeeecCeEEeeee-----ccCcccceEeeccC----ceEEcCCCCCcccccccccchhhhHHHHHHhc-CCC
Q 024295 15 LMLDSTS-RMSVRGQKLYHIF-----SCSTWSEYMVIDAN----YVVKVDPSIDPSDASFLSCGFTTGYGAAWKEA-KVE 83 (269)
Q Consensus 15 ~vg~~~~-~~~~~Gd~v~~~~-----~~g~~a~~~~v~~~----~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~-~~~ 83 (269)
.+|+++. ++.+ ||+|++.. ..|+|++|++++.. .++++|+++++++++.+++.+.+||+++.... +++
T Consensus 72 ~vG~~v~~~~~~-Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~ 150 (352)
T cd08247 72 KVGSNVASEWKV-GDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLG 150 (352)
T ss_pred EeCcccccCCCC-CCEEEEeecCCCCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccC
Confidence 3577887 7999 99998875 25899999999987 78999999999999999999999999987777 799
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhCCCceeeCCCCCCCcc---HHHHHHhh-hCCCCc
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKS---ISELVKGI-THGMGV 157 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~---~~~~i~~~-~~~~~~ 157 (269)
++++|+|+|+ |.+|++++++|+..|. +.++++. ++++.+.++++|++++++..+ .+ +...+.+. +++.++
T Consensus 151 ~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~ 226 (352)
T cd08247 151 PDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKLGADHFIDYDA---HSGVKLLKPVLENVKGQGKF 226 (352)
T ss_pred CCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHhCCCEEEecCC---CcccchHHHHHHhhcCCCCc
Confidence 9999999987 7999999999998754 3677776 456666788899999998765 33 44444444 435589
Q ss_pred cEEEEccCChhHHHHHHHHcc---cCCcEEEEEccCCCcccc-----------chhHhhhhCCceEEeeeccC--CC-CC
Q 024295 158 DYCFECTGVPSLLSEALETTK---VGKGKVIVIGVGVDAMVP-----------LNVIALACGGRTLKGTTFGG--IK-TK 220 (269)
Q Consensus 158 d~v~d~~g~~~~~~~~~~~l~---~~~G~~v~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~--~~-~~ 220 (269)
|++|||+|+......++++++ ++ |+++.++.....+.. .....+. ++.++....+.. .. ..
T Consensus 227 d~vl~~~g~~~~~~~~~~~l~~~~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 304 (352)
T cd08247 227 DLILDCVGGYDLFPHINSILKPKSKN-GHYVTIVGDYKANYKKDTFNSWDNPSANARKLF-GSLGLWSYNYQFFLLDPNA 304 (352)
T ss_pred eEEEECCCCHHHHHHHHHHhCccCCC-CEEEEEeCCCcccccchhhhhccccchhhhhhh-hhhcCCCcceEEEEecCCH
Confidence 999999998657788999999 96 999987522111100 1111111 222221111100 00 12
Q ss_pred CcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 221 SDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 221 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
+.+..+++++.++.++ +.+.+++++++++++++.++++.. +|+++++
T Consensus 305 ~~~~~~~~~~~~~~l~--~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 352 (352)
T cd08247 305 DWIEKCAELIADGKVK--PPIDSVYPFEDYKEAFERLKSNRAKGKVVIKV 352 (352)
T ss_pred HHHHHHHHHHhCCCeE--eeeccEecHHHHHHHHHHHHcCCCCCcEEEeC
Confidence 4577889999999865 336778999999999999987765 5988864
No 118
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.93 E-value=1.2e-23 Score=178.20 Aligned_cols=239 Identities=18% Similarity=0.233 Sum_probs=185.2
Q ss_pred CCceeeeecCeEEeeee------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHH--HhcCCC-CCCeE
Q 024295 18 DSTSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAW--KEAKVE-KGSSV 88 (269)
Q Consensus 18 ~~~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~--~~~~~~-~~~~v 88 (269)
.++..+.+ ||+|++.. ..|+|++|++++.+.++++|++++.++++.+++.+++|+.++. .....+ ++++|
T Consensus 72 ~~~~~~~~-Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~v 150 (324)
T cd08288 72 SSSPRFKP-GDRVVLTGWGVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPV 150 (324)
T ss_pred CCCCCCCC-CCEEEECCccCCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEE
Confidence 45556777 99998752 2589999999999999999999999999999999999987754 224555 57899
Q ss_pred EEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh
Q 024295 89 AVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP 167 (269)
Q Consensus 89 lI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~ 167 (269)
||+|+ |++|++++|+|+.+|+ +|++++.++++.+.++++|+++++++++ .. ..++.+.++ ++|.++|+++++
T Consensus 151 lI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~--~~~~~~~~~-~~~~~~d~~~~~ 223 (324)
T cd08288 151 LVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASEIIDRAE---LS--EPGRPLQKE-RWAGAVDTVGGH 223 (324)
T ss_pred EEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCEEEEcch---hh--HhhhhhccC-cccEEEECCcHH
Confidence 99997 9999999999999999 8999988999999999999999988764 22 245555555 689999999874
Q ss_pred hHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC---CCcHHHHHHHHHCCCCCCCcceeEE
Q 024295 168 SLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPTLLDKCKNKEFKLHQLLTHH 244 (269)
Q Consensus 168 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~ 244 (269)
.....+..++.+ |+++.+|.....+.+++...++.++.++.+.+...... .+.+..+.+++.++.+.+ +.+.
T Consensus 224 -~~~~~~~~~~~~-g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~ 298 (324)
T cd08288 224 -TLANVLAQTRYG-GAVAACGLAGGADLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDPALLEA---LTRE 298 (324)
T ss_pred -HHHHHHHHhcCC-CEEEEEEecCCCCCCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhcCCccc---ccee
Confidence 667888889996 99999987532223344455546899999875433221 124556777787887543 3578
Q ss_pred eehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 245 VKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
+++++++++++.+.++.. +|+++++
T Consensus 299 ~~~~~~~~a~~~~~~~~~~~~vvv~~ 324 (324)
T cd08288 299 IPLADVPDAAEAILAGQVRGRVVVDV 324 (324)
T ss_pred ecHHHHHHHHHHHhcCCccCeEEEeC
Confidence 999999999999988776 5888864
No 119
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.93 E-value=7.9e-24 Score=179.56 Aligned_cols=225 Identities=26% Similarity=0.359 Sum_probs=181.7
Q ss_pred cccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295 15 LMLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC 67 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~ 67 (269)
.+|+++..+++ ||+|+... ..|+|++|++++++.++++|+++++++++.+++
T Consensus 68 ~vG~~v~~~~~-Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~ 146 (325)
T cd08264 68 EVGDHVKGVKK-GDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPV 146 (325)
T ss_pred EECCCCCCCCC-CCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhh
Confidence 36778778888 99997541 358999999999999999999999999999999
Q ss_pred chhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH
Q 024295 68 GFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE 146 (269)
Q Consensus 68 ~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~ 146 (269)
.+.+|++++.. ++++++++|+|+|+ |++|++++++|+.+|+ +|+++++ .+.++++|++++++..+ ..+
T Consensus 147 ~~~~a~~~l~~-~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~~----~~~~~~~g~~~~~~~~~-----~~~ 215 (325)
T cd08264 147 AALTAYHALKT-AGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVSR----KDWLKEFGADEVVDYDE-----VEE 215 (325)
T ss_pred hhHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeH----HHHHHHhCCCeeecchH-----HHH
Confidence 99999999754 88999999999996 9999999999999999 7888763 36678899988887643 345
Q ss_pred HHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHH
Q 024295 147 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTL 226 (269)
Q Consensus 147 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (269)
.+++++ + ++|+++|++|.+ .+...+++++++ |+++.+|.......+++...+..++.++.++..+. ++.++++
T Consensus 216 ~l~~~~-~-~~d~vl~~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 288 (325)
T cd08264 216 KVKEIT-K-MADVVINSLGSS-FWDLSLSVLGRG-GRLVTFGTLTGGEVKLDLSDLYSKQISIIGSTGGT---RKELLEL 288 (325)
T ss_pred HHHHHh-C-CCCEEEECCCHH-HHHHHHHhhccC-CEEEEEecCCCCCCccCHHHHhhcCcEEEEccCCC---HHHHHHH
Confidence 566666 3 899999999975 889999999996 99999986532335566666666788887765332 3678889
Q ss_pred HHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe
Q 024295 227 LDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC 262 (269)
Q Consensus 227 ~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 262 (269)
++++...+ + .+.++|++++++++++.+.++..
T Consensus 289 ~~l~~~~~--~--~~~~~~~~~~~~~a~~~~~~~~~ 320 (325)
T cd08264 289 VKIAKDLK--V--KVWKTFKLEEAKEALKELFSKER 320 (325)
T ss_pred HHHHHcCC--c--eeEEEEcHHHHHHHHHHHHcCCC
Confidence 99986443 2 35678999999999998877654
No 120
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.92 E-value=1.1e-23 Score=173.58 Aligned_cols=205 Identities=26% Similarity=0.391 Sum_probs=169.1
Q ss_pred cccCCceeeeecCeEEeeee-----------------------ccCcccceEeeccCceEEcCCCCCcccccccccchhh
Q 024295 15 LMLDSTSRMSVRGQKLYHIF-----------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTT 71 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~-----------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~ 71 (269)
.+|+++..+++ ||+|++.. ..|+|++|+.++.+.++++|+++++++++.+++++.+
T Consensus 43 ~~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~ 121 (271)
T cd05188 43 EVGPGVTGVKV-GDRVVVLPNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLAT 121 (271)
T ss_pred EECCCCCcCCC-CCEEEEcCCCCCCCCHHHHhhCCCCCEeccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHH
Confidence 34777788899 99998764 2589999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhh
Q 024295 72 GYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGI 151 (269)
Q Consensus 72 a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~ 151 (269)
|++++.....++++++|||+|+|++|++++++++..|. +|+++++++++.+.++++|++++++..+ .++.+.+. .
T Consensus 122 a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~-~ 196 (271)
T cd05188 122 AYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKE---EDLEEELR-L 196 (271)
T ss_pred HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCc---CCHHHHHH-H
Confidence 99998887777999999999986699999999999998 9999999999999999999888888776 66666666 5
Q ss_pred hCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHH
Q 024295 152 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDK 229 (269)
Q Consensus 152 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 229 (269)
..+.++|+++++++.......++++++++ |+++.++..............+.+++++.++.... .+++++++++
T Consensus 197 ~~~~~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 270 (271)
T cd05188 197 TGGGGADVVIDAVGGPETLAQALRLLRPG-GRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGT---REDFEEALDL 270 (271)
T ss_pred hcCCCCCEEEECCCCHHHHHHHHHhcccC-CEEEEEccCCCCCCcccHHHHHhcceEEEEeecCC---HHHHHHHHhh
Confidence 55558999999999845788999999996 99999987664222222344566999999987543 2456666655
No 121
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.92 E-value=2.7e-23 Score=176.61 Aligned_cols=240 Identities=23% Similarity=0.316 Sum_probs=182.5
Q ss_pred ccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC
Q 024295 14 GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL 93 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~ 93 (269)
-.+|+++..+++ ||+|++....|+|++|+.++.+.++++|+++++++++.+++++.+||+++.....+.++++|+|+|+
T Consensus 70 ~~vG~~v~~~~~-Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~ 148 (331)
T cd08273 70 DALGSGVTGFEV-GDRVAALTRVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGA 148 (331)
T ss_pred EEeCCCCccCCC-CCEEEEeCCCcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 335788888888 9999987656899999999999999999999999999999999999999888788999999999996
Q ss_pred -ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHH
Q 024295 94 -GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE 172 (269)
Q Consensus 94 -g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~ 172 (269)
|++|++++++++..|+ +|++++. +++.+.++++|+.. ++... .++.+. ...++ ++|+++|++++. ....
T Consensus 149 ~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~~~~---~~~~~~--~~~~~-~~d~vl~~~~~~-~~~~ 218 (331)
T cd08273 149 SGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGATP-IDYRT---KDWLPA--MLTPG-GVDVVFDGVGGE-SYEE 218 (331)
T ss_pred CcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeE-EcCCC---cchhhh--hccCC-CceEEEECCchH-HHHH
Confidence 9999999999999999 8999887 88888888899754 44443 344333 23334 899999999987 4789
Q ss_pred HHHHcccCCcEEEEEccCCC-cccc--chhH------------hhhhCCceEEeeeccCC----CCCCcHHHHHHHHHCC
Q 024295 173 ALETTKVGKGKVIVIGVGVD-AMVP--LNVI------------ALACGGRTLKGTTFGGI----KTKSDLPTLLDKCKNK 233 (269)
Q Consensus 173 ~~~~l~~~~G~~v~~g~~~~-~~~~--~~~~------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~g 233 (269)
++++++++ |+++.+|.... .... +++. ....++.+......... ...+.+.+++++++++
T Consensus 219 ~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 297 (331)
T cd08273 219 SYAALAPG-GTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKG 297 (331)
T ss_pred HHHHhcCC-CEEEEEccCCCCCCccccccchhhhhhhhhhhcceeccceeEEEeechhcccCHHHHHHHHHHHHHHHHCC
Confidence 99999996 99999986653 1111 1110 11112233322221100 0124577899999999
Q ss_pred CCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEe
Q 024295 234 EFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI 267 (269)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl 267 (269)
.++. .+.+++++++++++++.+.++.. +|+|+
T Consensus 298 ~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvv~ 330 (331)
T cd08273 298 KIRP--KIAKRLPLSEVAEAHRLLESGKVVGKIVL 330 (331)
T ss_pred CccC--CcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence 8653 46778999999999998877655 57765
No 122
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.92 E-value=2.2e-23 Score=176.44 Aligned_cols=240 Identities=24% Similarity=0.326 Sum_probs=188.5
Q ss_pred ccCCceeeeecCeEEeeee---ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295 16 MLDSTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG 92 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G 92 (269)
+|+++..+++ ||+|++.. ..|+|++|+.++++.++++|++++..+++.+.+++.+|++++...+.++++++++|+|
T Consensus 71 ~G~~~~~~~~-Gd~V~~~~~~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g 149 (325)
T cd08271 71 VGAKVTGWKV-GDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITG 149 (325)
T ss_pred eCCCCCcCCC-CCEEEeccCCCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEC
Confidence 5777777888 99999774 3589999999999999999999999999999999999999988888999999999999
Q ss_pred C-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295 93 L-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS 171 (269)
Q Consensus 93 ~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~ 171 (269)
+ |++|++++++++..|+ +|+.+. ++++.+.++++|++.+++... .++.+.+.+..++.++|+++++++++ ...
T Consensus 150 ~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~ 223 (325)
T cd08271 150 GAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGADHVIDYND---EDVCERIKEITGGRGVDAVLDTVGGE-TAA 223 (325)
T ss_pred CccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCcEEecCCC---ccHHHHHHHHcCCCCCcEEEECCCcH-hHH
Confidence 7 7899999999999999 788776 667888888899988888776 67778888877767899999999886 557
Q ss_pred HHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC----------CCCCcHHHHHHHHHCCCCCCCcce
Q 024295 172 EALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI----------KTKSDLPTLLDKCKNKEFKLHQLL 241 (269)
Q Consensus 172 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~g~~~~~~~~ 241 (269)
..+++++++ |+++.++...... ....+ .++..+........ ..++.+.++++++.++.+++ ..
T Consensus 224 ~~~~~l~~~-G~~v~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~ 296 (325)
T cd08271 224 ALAPTLAFN-GHLVCIQGRPDAS---PDPPF-TRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLEP--LV 296 (325)
T ss_pred HHHHhhccC-CEEEEEcCCCCCc---chhHH-hhcceEEEEEecccccccchhhHHHHHHHHHHHHHHHHCCCeee--cc
Confidence 789999995 9999987543211 11111 13333333222111 01123567888898998653 35
Q ss_pred eEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 242 THHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
.+.++++++.++++.+.++.. .|+++++
T Consensus 297 ~~~~~~~~~~~a~~~~~~~~~~~kiv~~~ 325 (325)
T cd08271 297 IEVLPFEQLPEALRALKDRHTRGKIVVTI 325 (325)
T ss_pred ceEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence 578999999999999887665 5888764
No 123
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.92 E-value=8.9e-23 Score=173.64 Aligned_cols=243 Identities=21% Similarity=0.283 Sum_probs=192.4
Q ss_pred ccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-C
Q 024295 16 MLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-G 94 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g 94 (269)
+|+++.++.+ ||+|+++...|+|++|+.++.+.++++|+++++++++.+++++++||+++....+++++++|+|+|+ |
T Consensus 71 ~g~~~~~~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g 149 (337)
T cd08275 71 VGEGVKDFKV-GDRVMGLTRFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAG 149 (337)
T ss_pred ECCCCcCCCC-CCEEEEecCCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcc
Confidence 5677778888 9999988666899999999999999999999999999999999999999888889999999999996 9
Q ss_pred hhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHH
Q 024295 95 TVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA 173 (269)
Q Consensus 95 ~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~ 173 (269)
++|++++++++.. +. .++... .+++.+.++++|++.+++... .++.+.++..++ .++|+++|++|+. ....+
T Consensus 150 ~~g~~~~~~a~~~~~~-~~~~~~-~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~-~~~d~v~~~~g~~-~~~~~ 222 (337)
T cd08275 150 GVGLAAGQLCKTVPNV-TVVGTA-SASKHEALKENGVTHVIDYRT---QDYVEEVKKISP-EGVDIVLDALGGE-DTRKS 222 (337)
T ss_pred hHHHHHHHHHHHccCc-EEEEeC-CHHHHHHHHHcCCcEEeeCCC---CcHHHHHHHHhC-CCceEEEECCcHH-HHHHH
Confidence 9999999999998 33 333222 345788888899988888776 778888887775 4899999999976 67889
Q ss_pred HHHcccCCcEEEEEccCCC-ccc---------------cchhHhhhhCCceEEeeeccCCCC-C----CcHHHHHHHHHC
Q 024295 174 LETTKVGKGKVIVIGVGVD-AMV---------------PLNVIALACGGRTLKGTTFGGIKT-K----SDLPTLLDKCKN 232 (269)
Q Consensus 174 ~~~l~~~~G~~v~~g~~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~l~~~ 232 (269)
+++++++ |+++.+|.... ... .+....++.++.++.++....... . ..+.++++++.+
T Consensus 223 ~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (337)
T cd08275 223 YDLLKPM-GRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEE 301 (337)
T ss_pred HHhhccC-cEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHC
Confidence 9999996 99999986542 111 112234456888888876542211 1 236678888889
Q ss_pred CCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295 233 KEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI 269 (269)
Q Consensus 233 g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~ 269 (269)
+.+.. ...+.|++++++++++.+.++.. +|+++++
T Consensus 302 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~ 337 (337)
T cd08275 302 GKIKP--KIDSVFPFEEVGEAMRRLQSRKNIGKVVLTP 337 (337)
T ss_pred CCCCC--ceeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 88654 36678999999999999887665 5988875
No 124
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.91 E-value=1.9e-23 Score=178.92 Aligned_cols=239 Identities=20% Similarity=0.216 Sum_probs=181.7
Q ss_pred cccCCceeeeecCeEEeeee---ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCC----CCe
Q 024295 15 LMLDSTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEK----GSS 87 (269)
Q Consensus 15 ~vg~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~----~~~ 87 (269)
.+|.++..+++ ||+|++.. ..|+|++|+.++++.++++|+++++++++.+++.+.+||+++...+.+.+ +++
T Consensus 87 ~vG~~v~~~~~-Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~ 165 (350)
T cd08248 87 DIGSGVKSFEI-GDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKR 165 (350)
T ss_pred ecCCCcccCCC-CCEEEEecCCCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCE
Confidence 35777888899 99998764 35899999999999999999999999999999999999999877777754 999
Q ss_pred EEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295 88 VAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV 166 (269)
Q Consensus 88 vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~ 166 (269)
|+|+|+ |++|++++++++.+|+ +|+++.++ ++.+.++++|.+++++..+ .++.+.+.. ..++|+++|++|.
T Consensus 166 vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~~~~~~l~~---~~~vd~vi~~~g~ 237 (350)
T cd08248 166 VLILGGSGGVGTFAIQLLKAWGA-HVTTTCST-DAIPLVKSLGADDVIDYNN---EDFEEELTE---RGKFDVILDTVGG 237 (350)
T ss_pred EEEECCCChHHHHHHHHHHHCCC-eEEEEeCc-chHHHHHHhCCceEEECCC---hhHHHHHHh---cCCCCEEEECCCh
Confidence 999985 9999999999999999 78888754 6777888999988888765 556555543 2489999999998
Q ss_pred hhHHHHHHHHcccCCcEEEEEccCCC-cc--ccc--hh----Hhhhh-------CCceEEeeeccCCCCCCcHHHHHHHH
Q 024295 167 PSLLSEALETTKVGKGKVIVIGVGVD-AM--VPL--NV----IALAC-------GGRTLKGTTFGGIKTKSDLPTLLDKC 230 (269)
Q Consensus 167 ~~~~~~~~~~l~~~~G~~v~~g~~~~-~~--~~~--~~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~ 230 (269)
+ ....++++++++ |+++.+|.... .. ..+ .. ..+.. +........ .. ...+.+..+++++
T Consensus 238 ~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 313 (350)
T cd08248 238 D-TEKWALKLLKKG-GTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGF-FS-PSGSALDELAKLV 313 (350)
T ss_pred H-HHHHHHHHhccC-CEEEEecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEE-EC-CCHHHHHHHHHHH
Confidence 7 789999999996 99999985432 10 011 00 01110 011110000 01 1235688899999
Q ss_pred HCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295 231 KNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT 268 (269)
Q Consensus 231 ~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~ 268 (269)
.++.+.+ .+++.+++++++++++.+.++.. .|++++
T Consensus 314 ~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~ 350 (350)
T cd08248 314 EDGKIKP--VIDKVFPFEEVPEAYEKVESGHARGKTVIK 350 (350)
T ss_pred hCCCEec--ccceeecHHHHHHHHHHHhcCCCceEEEeC
Confidence 9998653 46788999999999999887665 587763
No 125
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.91 E-value=5e-23 Score=173.84 Aligned_cols=239 Identities=24% Similarity=0.287 Sum_probs=180.7
Q ss_pred ccccCCceeeeecCeEEeeeec---cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEE
Q 024295 14 GLMLDSTSRMSVRGQKLYHIFS---CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAV 90 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~~---~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI 90 (269)
-.+|+++..+++ ||+|++... .|+|++|+.++.+.++++|++++.++++.+++++.+||+++.....++++++|+|
T Consensus 71 ~~~G~~v~~~~~-Gd~V~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli 149 (319)
T cd08267 71 VAVGSGVTRFKV-GDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLI 149 (319)
T ss_pred EEeCCCCCCCCC-CCEEEEeccCCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEE
Confidence 345778888888 999987752 5899999999999999999999999999999999999999887778999999999
Q ss_pred EcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh-h
Q 024295 91 LGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP-S 168 (269)
Q Consensus 91 ~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~-~ 168 (269)
+|+ |++|++++++++..|+ +|++++++ ++.+.++++|.+++++... .++. ...+.+.++|++++|+++. .
T Consensus 150 ~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~~~~---~~~~~~~~~d~vi~~~~~~~~ 221 (319)
T cd08267 150 NGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYTT---EDFV---ALTAGGEKYDVIFDAVGNSPF 221 (319)
T ss_pred EcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCC---CCcc---hhccCCCCCcEEEECCCchHH
Confidence 996 9999999999999999 89988865 8888889999888887765 3443 3344555899999999842 2
Q ss_pred HHHHHHHHcccCCcEEEEEccCCC-ccccc---hhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEE
Q 024295 169 LLSEALETTKVGKGKVIVIGVGVD-AMVPL---NVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHH 244 (269)
Q Consensus 169 ~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 244 (269)
.....+..++++ |+++.+|.... ..... ...... ....+....... ..+.+.++++++.+++++ +.++++
T Consensus 222 ~~~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~--~~~~~~ 295 (319)
T cd08267 222 SLYRASLALKPG-GRYVSVGGGPSGLLLVLLLLPLTLGG-GGRRLKFFLAKP--NAEDLEQLAELVEEGKLK--PVIDSV 295 (319)
T ss_pred HHHHhhhccCCC-CEEEEeccccccccccccccchhhcc-ccceEEEEEecC--CHHHHHHHHHHHHCCCee--eeeeeE
Confidence 334444458995 99999987653 11111 111111 222222222111 246788899999999865 347788
Q ss_pred eehhhHHHHHHHhcCCCe-eeEEe
Q 024295 245 VKLEEIDKAIQLLKQPDC-VKVLI 267 (269)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~-~k~vl 267 (269)
|++++++++++.+.++.. .|+++
T Consensus 296 ~~~~~i~~a~~~~~~~~~~~~vvv 319 (319)
T cd08267 296 YPLEDAPEAYRRLKSGRARGKVVI 319 (319)
T ss_pred EcHHHHHHHHHHHhcCCCCCcEeC
Confidence 999999999999887655 46653
No 126
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.91 E-value=1.2e-22 Score=170.55 Aligned_cols=231 Identities=19% Similarity=0.259 Sum_probs=184.8
Q ss_pred ccCCceeeeecCeEEeeee---ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295 16 MLDSTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG 92 (269)
Q Consensus 16 vg~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G 92 (269)
+|.++.++++ ||+|++.. ..|+|++|+.++...++++|+++++.+++.+++.+.+|++++.....+.++++++|+|
T Consensus 74 ~G~~~~~~~~-G~~V~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g 152 (309)
T cd05289 74 VGPGVTGFKV-GDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHG 152 (309)
T ss_pred eCCCCCCCCC-CCEEEEccCCCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEec
Confidence 4667777888 99999875 2489999999999999999999999999999999999999988777799999999999
Q ss_pred C-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295 93 L-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS 171 (269)
Q Consensus 93 ~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~ 171 (269)
+ |.+|++++++++..|+ +|++++.++ +.+.++++|.+.+++... .++.+ ...+.++|+++|++++. ...
T Consensus 153 ~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~~~~~~---~~~~~----~~~~~~~d~v~~~~~~~-~~~ 222 (309)
T cd05289 153 AAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEVIDYTK---GDFER----AAAPGGVDAVLDTVGGE-TLA 222 (309)
T ss_pred CCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEEEeCCC---Cchhh----ccCCCCceEEEECCchH-HHH
Confidence 6 9999999999999999 888888776 888888899888887665 44433 33445899999999987 779
Q ss_pred HHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHH
Q 024295 172 EALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEID 251 (269)
Q Consensus 172 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 251 (269)
.++++++++ |+++.+|.... ... ....++.++........ .+.+.+++++++++.++ +.+++.|++++++
T Consensus 223 ~~~~~l~~~-g~~v~~g~~~~-~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 292 (309)
T cd05289 223 RSLALVKPG-GRLVSIAGPPP-AEQ----AAKRRGVRAGFVFVEPD--GEQLAELAELVEAGKLR--PVVDRVFPLEDAA 292 (309)
T ss_pred HHHHHHhcC-cEEEEEcCCCc-chh----hhhhccceEEEEEeccc--HHHHHHHHHHHHCCCEE--EeeccEEcHHHHH
Confidence 999999996 99999986542 111 22335666665543221 35788899999999854 3467889999999
Q ss_pred HHHHHhcCCCe-eeEEe
Q 024295 252 KAIQLLKQPDC-VKVLI 267 (269)
Q Consensus 252 ~a~~~~~~~~~-~k~vl 267 (269)
++++.+..+.. .|+++
T Consensus 293 ~a~~~~~~~~~~~kvv~ 309 (309)
T cd05289 293 EAHERLESGHARGKVVL 309 (309)
T ss_pred HHHHHHHhCCCCCcEeC
Confidence 99998877655 46653
No 127
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=99.83 E-value=7.6e-20 Score=134.49 Aligned_cols=129 Identities=30% Similarity=0.471 Sum_probs=117.9
Q ss_pred hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHH
Q 024295 95 TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL 174 (269)
Q Consensus 95 ~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~ 174 (269)
++|++++|+||..|+ +|++++++++|++.++++|+++++++++ .++.+++++.+++.++|+||||+|.+..++.++
T Consensus 1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~---~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~ 76 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSD---DDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAI 76 (130)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTT---SSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHH
T ss_pred ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccc---cccccccccccccccceEEEEecCcHHHHHHHH
Confidence 589999999999996 9999999999999999999999999987 889999999998889999999999888999999
Q ss_pred HHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHH
Q 024295 175 ETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCK 231 (269)
Q Consensus 175 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 231 (269)
++++++ |+++.+|.+.....+++...++.+++++.+++... .++++++++++.
T Consensus 77 ~~l~~~-G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~la 129 (130)
T PF00107_consen 77 KLLRPG-GRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGS---PEDFQEALQLLA 129 (130)
T ss_dssp HHEEEE-EEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGG---HHHHHHHHHHHH
T ss_pred HHhccC-CEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCC---HHHHHHHHHHhc
Confidence 999996 99999998875578888899999999999998665 477888888875
No 128
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.59 E-value=1.2e-13 Score=118.69 Aligned_cols=174 Identities=21% Similarity=0.224 Sum_probs=135.8
Q ss_pred HHHHHHhcC-CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhh
Q 024295 73 YGAAWKEAK-VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGI 151 (269)
Q Consensus 73 ~~~l~~~~~-~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~ 151 (269)
+.++.+..+ ..+|++|+|+|.|++|+.+++.++..|+ +|+++++++.|.+.++.+|++.+ + ..+.+
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~-~--------~~e~v--- 255 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVM-T--------MEEAV--- 255 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEc-c--------HHHHH---
Confidence 344444434 3589999999999999999999999999 89999999999999999997532 1 11222
Q ss_pred hCCCCccEEEEccCChhHHHHH-HHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHH--HHHH
Q 024295 152 THGMGVDYCFECTGVPSLLSEA-LETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLP--TLLD 228 (269)
Q Consensus 152 ~~~~~~d~v~d~~g~~~~~~~~-~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 228 (269)
.++|+|++|+|.+..+... ++.++++ |.++.+|.. +.+++...+..+++++.++.... ....++ ..+.
T Consensus 256 ---~~aDVVI~atG~~~~i~~~~l~~mk~G-gilvnvG~~---~~eId~~~L~~~el~i~g~~~~~--~~~~~~~g~aI~ 326 (413)
T cd00401 256 ---KEGDIFVTTTGNKDIITGEHFEQMKDG-AIVCNIGHF---DVEIDVKGLKENAVEVVNIKPQV--DRYELPDGRRII 326 (413)
T ss_pred ---cCCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEeCCC---CCccCHHHHHhhccEEEEccCCc--ceEEcCCcchhh
Confidence 1689999999988777765 9999996 999999964 45677778888899998876432 112455 6899
Q ss_pred HHHCCCC-CCCcceeEE-----eehh-hHHHHHHHhcCCCe--eeEEee
Q 024295 229 KCKNKEF-KLHQLLTHH-----VKLE-EIDKAIQLLKQPDC--VKVLIT 268 (269)
Q Consensus 229 l~~~g~~-~~~~~~~~~-----~~~~-~~~~a~~~~~~~~~--~k~vl~ 268 (269)
++.+|++ ++.+.++|. ++++ ++.++++.+.++.. .|+++.
T Consensus 327 LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~ 375 (413)
T cd00401 327 LLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFL 375 (413)
T ss_pred hhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEEC
Confidence 9999998 888888888 8899 99999998877543 477654
No 129
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=99.51 E-value=2.5e-13 Score=119.57 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=114.4
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee-eCCCCCC----------CccHHHHHHh
Q 024295 82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF-INPDDEP----------NKSISELVKG 150 (269)
Q Consensus 82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~----------~~~~~~~i~~ 150 (269)
..++++|+|+|+|++|+++++.|+.+|+ +|+++|+++++++.++++|++.+ +|..+.+ ..++.+..++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 4578999999999999999999999999 89999999999999999999854 5553300 0123233333
Q ss_pred h-hCC-CCccEEEEccCCh-----hH-HHHHHHHcccCCcEEEEEccCCCc--cccchhHhhhh-CCceEEeeeccCCCC
Q 024295 151 I-THG-MGVDYCFECTGVP-----SL-LSEALETTKVGKGKVIVIGVGVDA--MVPLNVIALAC-GGRTLKGTTFGGIKT 219 (269)
Q Consensus 151 ~-~~~-~~~d~v~d~~g~~-----~~-~~~~~~~l~~~~G~~v~~g~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~ 219 (269)
. .+. .++|++|+|++.+ .. .+++++.+++| |+++.+|...+. ..+.+...++. +++++.|.. +++
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG-gvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~--n~P- 316 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG-SVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYT--DLP- 316 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC-CEEEEEccCCCCCcccccCccceEeECCEEEEEeC--CCc-
Confidence 2 221 3799999999863 24 49999999997 999999975332 34454455664 899999876 232
Q ss_pred CCcHHHHHHHHHCCCCCCCccee
Q 024295 220 KSDLPTLLDKCKNKEFKLHQLLT 242 (269)
Q Consensus 220 ~~~~~~~~~l~~~g~~~~~~~~~ 242 (269)
.+...++.+++.++.+++.++++
T Consensus 317 ~~~p~~As~lla~~~i~l~~lIt 339 (509)
T PRK09424 317 SRLPTQSSQLYGTNLVNLLKLLC 339 (509)
T ss_pred hhHHHHHHHHHHhCCccHHHHhc
Confidence 23333689999998877665555
No 130
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=99.41 E-value=1.5e-13 Score=100.41 Aligned_cols=120 Identities=24% Similarity=0.311 Sum_probs=75.9
Q ss_pred CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC--ChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhC
Q 024295 128 FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG--VPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACG 205 (269)
Q Consensus 128 ~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g--~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~ 205 (269)
+|+++++|+++ .++ ....++|+|||++| .+..+..+++++ ++ |+++.++. . ........+
T Consensus 1 LGAd~vidy~~---~~~-------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~-G~~v~i~~-~-----~~~~~~~~~ 62 (127)
T PF13602_consen 1 LGADEVIDYRD---TDF-------AGPGGVDVVIDTVGQTGESLLDASRKLL-PG-GRVVSIGG-D-----LPSFARRLK 62 (127)
T ss_dssp CT-SEEEETTC---SHH-------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EE-EEEEEE-S-H-----HHHHHHHHH
T ss_pred CCcCEEecCCC---ccc-------cCCCCceEEEECCCCccHHHHHHHHHHC-CC-CEEEEECC-c-----ccchhhhhc
Confidence 68999999986 666 33349999999999 554446667777 96 99999983 1 111111111
Q ss_pred CceEEeeeccCCC----CCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEe
Q 024295 206 GRTLKGTTFGGIK----TKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI 267 (269)
Q Consensus 206 ~~~~~~~~~~~~~----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl 267 (269)
...+....+.... ..+.++++.+++.+|++++ .+.++||++++.+|++.++++.. +|+||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~l~~--~i~~~f~l~~~~~A~~~l~~~~~~GKvVl 127 (127)
T PF13602_consen 63 GRSIRYSFLFSVDPNAIRAEALEELAELVAEGKLKP--PIDRVFPLEEAPEAHERLESGHARGKVVL 127 (127)
T ss_dssp CHHCEEECCC-H--HHHHHHHHHHHHHHHHTTSS-----EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred ccceEEEEEEecCCCchHHHHHHHHHHHHHCCCeEE--eeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence 2222222221100 1245999999999999665 48889999999999999998876 69986
No 131
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.82 E-value=2.8e-08 Score=82.24 Aligned_cols=163 Identities=20% Similarity=0.235 Sum_probs=100.1
Q ss_pred hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhhhC
Q 024295 79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGITH 153 (269)
Q Consensus 79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~ 153 (269)
.+.++++++||.+|+|+ |..+.++++..|.. +|++++.+++..+.+++. +...+- ... .++.+ + .+.+
T Consensus 72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~-~~~---~d~~~-l-~~~~ 144 (272)
T PRK11873 72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVE-FRL---GEIEA-L-PVAD 144 (272)
T ss_pred hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEE-EEE---cchhh-C-CCCC
Confidence 35788999999999988 98888888887763 799999999988888763 322211 111 22211 1 1122
Q ss_pred CCCccEEEEcc------CChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHH
Q 024295 154 GMGVDYCFECT------GVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLL 227 (269)
Q Consensus 154 ~~~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (269)
..||+|+... +.+..+.++.+.|++| |+++..+.......+ ....+...+.+..... .....++.
T Consensus 145 -~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpG-G~l~i~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~e~~ 215 (272)
T PRK11873 145 -NSVDVIISNCVINLSPDKERVFKEAFRVLKPG-GRFAISDVVLRGELP----EEIRNDAELYAGCVAG---ALQEEEYL 215 (272)
T ss_pred -CceeEEEEcCcccCCCCHHHHHHHHHHHcCCC-cEEEEEEeeccCCCC----HHHHHhHHHHhccccC---CCCHHHHH
Confidence 3899998432 2345689999999997 999987654322111 1111222222111111 12455666
Q ss_pred HHHHC-CCCCCCcceeEEeehhhHHHHHHHh
Q 024295 228 DKCKN-KEFKLHQLLTHHVKLEEIDKAIQLL 257 (269)
Q Consensus 228 ~l~~~-g~~~~~~~~~~~~~~~~~~~a~~~~ 257 (269)
+++++ |-..+.......+++++..++++.+
T Consensus 216 ~~l~~aGf~~v~i~~~~~~~l~~~~~~~~~~ 246 (272)
T PRK11873 216 AMLAEAGFVDITIQPKREYRIPDAREFLEDW 246 (272)
T ss_pred HHHHHCCCCceEEEeccceecccHHHHHHHh
Confidence 77766 4333333344568889999999988
No 132
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.72 E-value=2e-07 Score=82.46 Aligned_cols=108 Identities=21% Similarity=0.330 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee-eCCCCC----------CCccHHHHHHhh
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF-INPDDE----------PNKSISELVKGI 151 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~----------~~~~~~~~i~~~ 151 (269)
.++.+|+|+|+|.+|+++++.++.+|+ .|+++++++++++.++++|++.+ ++..+. -.+++.+..++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 356899999999999999999999999 79999999999999999998753 232110 012333333332
Q ss_pred hC--CCCccEEEEcc---CChh---HHHHHHHHcccCCcEEEEEccCCC
Q 024295 152 TH--GMGVDYCFECT---GVPS---LLSEALETTKVGKGKVIVIGVGVD 192 (269)
Q Consensus 152 ~~--~~~~d~v~d~~---g~~~---~~~~~~~~l~~~~G~~v~~g~~~~ 192 (269)
.. ..++|++|+|+ |.+. ..++.++.+++| +.++.++...+
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG-svIVDlA~d~G 288 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG-SVIVDLAAEQG 288 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC-CEEEEeeeCCC
Confidence 22 24799999999 6544 467889999997 99999876544
No 133
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.53 E-value=2.1e-06 Score=74.62 Aligned_cols=102 Identities=25% Similarity=0.305 Sum_probs=77.5
Q ss_pred HHHHHHhcCCC-CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhh
Q 024295 73 YGAAWKEAKVE-KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGI 151 (269)
Q Consensus 73 ~~~l~~~~~~~-~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~ 151 (269)
|.++.+...+. .+++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|+. +. ++.+.+
T Consensus 199 ~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~-v~--------~l~eal--- 265 (425)
T PRK05476 199 LDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR-VM--------TMEEAA--- 265 (425)
T ss_pred HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE-ec--------CHHHHH---
Confidence 44444443444 89999999999999999999999999 999999988877666666654 22 122222
Q ss_pred hCCCCccEEEEccCChhHHH-HHHHHcccCCcEEEEEccCC
Q 024295 152 THGMGVDYCFECTGVPSLLS-EALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 152 ~~~~~~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~ 191 (269)
. ++|++++++|.+..+. ..+..++++ +.++..|...
T Consensus 266 -~--~aDVVI~aTG~~~vI~~~~~~~mK~G-ailiNvG~~d 302 (425)
T PRK05476 266 -E--LGDIFVTATGNKDVITAEHMEAMKDG-AILANIGHFD 302 (425)
T ss_pred -h--CCCEEEECCCCHHHHHHHHHhcCCCC-CEEEEcCCCC
Confidence 1 7899999999876665 678889996 8999988765
No 134
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.44 E-value=5.4e-06 Score=71.66 Aligned_cols=93 Identities=27% Similarity=0.317 Sum_probs=73.5
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295 82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
...|++|+|+|.|.+|..+++.++..|+ +|+++++++.+...++..|+. +.+ ..+.+ .+.|+++
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~-v~~--------leeal------~~aDVVI 255 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFR-VMT--------MEEAA------KIGDIFI 255 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCE-eCC--------HHHHH------hcCCEEE
Confidence 3689999999999999999999999999 899999888777667666753 221 12222 1679999
Q ss_pred EccCChhHHH-HHHHHcccCCcEEEEEccCC
Q 024295 162 ECTGVPSLLS-EALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 162 d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~ 191 (269)
+++|.+..+. ..+..++++ +.++.+|...
T Consensus 256 taTG~~~vI~~~~~~~mK~G-ailiN~G~~~ 285 (406)
T TIGR00936 256 TATGNKDVIRGEHFENMKDG-AIVANIGHFD 285 (406)
T ss_pred ECCCCHHHHHHHHHhcCCCC-cEEEEECCCC
Confidence 9999887666 488889996 9999988754
No 135
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.41 E-value=1.3e-06 Score=73.60 Aligned_cols=109 Identities=22% Similarity=0.264 Sum_probs=79.6
Q ss_pred CceEEcCCCCCcccccccccchhhhHHHHHHhcCC---CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchH-H
Q 024295 48 NYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV---EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKK-E 123 (269)
Q Consensus 48 ~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~---~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~-~ 123 (269)
...+++|+.++.+.+.... +.++++.++...... .++.+|+|+|+|.+|..+++.++..|..+|+++++++++. +
T Consensus 139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~ 217 (311)
T cd05213 139 QKAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE 217 (311)
T ss_pred HHHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3567888888888887765 777887775433222 3689999999999999999999988877999999998765 5
Q ss_pred HHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH
Q 024295 124 KGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL 169 (269)
Q Consensus 124 ~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~ 169 (269)
.++++|.. +++. +++.+.+. .+|+||.|++.+..
T Consensus 218 la~~~g~~-~~~~-----~~~~~~l~------~aDvVi~at~~~~~ 251 (311)
T cd05213 218 LAKELGGN-AVPL-----DELLELLN------EADVVISATGAPHY 251 (311)
T ss_pred HHHHcCCe-EEeH-----HHHHHHHh------cCCEEEECCCCCch
Confidence 66778863 3322 22222221 58999999998754
No 136
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2e-06 Score=66.84 Aligned_cols=122 Identities=18% Similarity=0.254 Sum_probs=86.9
Q ss_pred cCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHH----HHhC
Q 024295 53 VDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEK----GKAF 128 (269)
Q Consensus 53 vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~----~~~~ 128 (269)
.+..++....-.+.-+...|. +.+...++++++||-+|+|+ |+.++-+++..+ +|+.+++.++-.+. ++.+
T Consensus 43 ~d~~lpi~~gqtis~P~~vA~--m~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~l 117 (209)
T COG2518 43 EDRALPIGCGQTISAPHMVAR--MLQLLELKPGDRVLEIGTGS-GYQAAVLARLVG--RVVSIERIEELAEQARRNLETL 117 (209)
T ss_pred cCCcccCCCCceecCcHHHHH--HHHHhCCCCCCeEEEECCCc-hHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHc
Confidence 344455556666666666664 56788999999999999987 999999999887 89999988764444 4557
Q ss_pred CCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295 129 GMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 129 g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 187 (269)
|...+.-... | -...+.+...||.|+-+.+.+..-+..++.|++| |+++.-
T Consensus 118 g~~nV~v~~g----D---G~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~g-Grlv~P 168 (209)
T COG2518 118 GYENVTVRHG----D---GSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPG-GRLVIP 168 (209)
T ss_pred CCCceEEEEC----C---cccCCCCCCCcCEEEEeeccCCCCHHHHHhcccC-CEEEEE
Confidence 7643322111 1 1233444459999998887765557889999997 988765
No 137
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.38 E-value=1e-05 Score=67.66 Aligned_cols=95 Identities=19% Similarity=0.256 Sum_probs=74.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC 163 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 163 (269)
.+++++|+|.|.+|+.+++.++.+|+ +|+++++++++.+.++++|...+ .. .++ .+... ++|+||++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~-~~-----~~l----~~~l~--~aDiVI~t 217 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPF-HL-----SEL----AEEVG--KIDIIFNT 217 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeee-cH-----HHH----HHHhC--CCCEEEEC
Confidence 58999999999999999999999999 99999999888888888886532 11 122 22222 68999999
Q ss_pred cCChhHHHHHHHHcccCCcEEEEEccCCC
Q 024295 164 TGVPSLLSEALETTKVGKGKVIVIGVGVD 192 (269)
Q Consensus 164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~ 192 (269)
++........++.++++ +.++.++..++
T Consensus 218 ~p~~~i~~~~l~~~~~g-~vIIDla~~pg 245 (296)
T PRK08306 218 IPALVLTKEVLSKMPPE-ALIIDLASKPG 245 (296)
T ss_pred CChhhhhHHHHHcCCCC-cEEEEEccCCC
Confidence 87553456777889996 99998886654
No 138
>PLN02494 adenosylhomocysteinase
Probab=98.30 E-value=1.4e-05 Score=69.90 Aligned_cols=102 Identities=20% Similarity=0.282 Sum_probs=78.2
Q ss_pred HHHHHHhcCC-CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhh
Q 024295 73 YGAAWKEAKV-EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGI 151 (269)
Q Consensus 73 ~~~l~~~~~~-~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~ 151 (269)
+.++.+...+ ..|++|+|+|.|.+|..+++.++..|+ +|+++++++.+...+...|... + ...+.+.
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~v-v--------~leEal~-- 308 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQV-L--------TLEDVVS-- 308 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCee-c--------cHHHHHh--
Confidence 3344444443 579999999999999999999999999 8999998887776777777542 1 1222221
Q ss_pred hCCCCccEEEEccCChhH-HHHHHHHcccCCcEEEEEccCC
Q 024295 152 THGMGVDYCFECTGVPSL-LSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 152 ~~~~~~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
..|+++.++|.... ....+..++++ +.++.+|...
T Consensus 309 ----~ADVVI~tTGt~~vI~~e~L~~MK~G-AiLiNvGr~~ 344 (477)
T PLN02494 309 ----EADIFVTTTGNKDIIMVDHMRKMKNN-AIVCNIGHFD 344 (477)
T ss_pred ----hCCEEEECCCCccchHHHHHhcCCCC-CEEEEcCCCC
Confidence 57999999997754 47899999996 9999999754
No 139
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.27 E-value=3.8e-05 Score=62.76 Aligned_cols=151 Identities=18% Similarity=0.254 Sum_probs=93.8
Q ss_pred CceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHH
Q 024295 19 STSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGL 98 (269)
Q Consensus 19 ~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~ 98 (269)
....+.+ |++++... +|.+|.. +...++++++.+++..+..-. +.. ....+. ..+.++.+||.+|+|+ |.
T Consensus 63 ~~~p~~~-g~~~~i~p---~~~~~~~-~~~~~i~i~p~~afgtg~h~t-t~~-~l~~l~--~~~~~~~~VLDiGcGs-G~ 132 (250)
T PRK00517 63 YFHPIRI-GDRLWIVP---SWEDPPD-PDEINIELDPGMAFGTGTHPT-TRL-CLEALE--KLVLPGKTVLDVGCGS-GI 132 (250)
T ss_pred HCCCEEE-cCCEEEEC---CCcCCCC-CCeEEEEECCCCccCCCCCHH-HHH-HHHHHH--hhcCCCCEEEEeCCcH-HH
Confidence 3444667 77655332 5777755 778889999999888765222 111 122222 1256889999999987 88
Q ss_pred HHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh---hHHHHHHH
Q 024295 99 GAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP---SLLSEALE 175 (269)
Q Consensus 99 ~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~---~~~~~~~~ 175 (269)
.++.+++ .|+.+|+++|.++...+.+++.....-+... -.+ ..+...||+|+-..... ..+..+.+
T Consensus 133 l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~~~~~~~----~~~------~~~~~~fD~Vvani~~~~~~~l~~~~~~ 201 (250)
T PRK00517 133 LAIAAAK-LGAKKVLAVDIDPQAVEAARENAELNGVELN----VYL------PQGDLKADVIVANILANPLLELAPDLAR 201 (250)
T ss_pred HHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCce----EEE------ccCCCCcCEEEEcCcHHHHHHHHHHHHH
Confidence 8876555 5775799999999888877653111000000 000 00111599998655432 24567888
Q ss_pred HcccCCcEEEEEccCC
Q 024295 176 TTKVGKGKVIVIGVGV 191 (269)
Q Consensus 176 ~l~~~~G~~v~~g~~~ 191 (269)
.+++| |+++..|...
T Consensus 202 ~Lkpg-G~lilsgi~~ 216 (250)
T PRK00517 202 LLKPG-GRLILSGILE 216 (250)
T ss_pred hcCCC-cEEEEEECcH
Confidence 99996 9999887543
No 140
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.13 E-value=3.3e-05 Score=66.59 Aligned_cols=99 Identities=20% Similarity=0.238 Sum_probs=69.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE 162 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d 162 (269)
+..+|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.+.. ++........+ ..++.+.+ . .+|++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~~--~~~l~~~l----~--~aDvVI~ 236 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYSN--AYEIEDAV----K--RADLLIG 236 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccCC--HHHHHHHH----c--cCCEEEE
Confidence 34569999999999999999999999 89999998888777654 55432222221 12232222 2 6899999
Q ss_pred ccC---C--hh-HHHHHHHHcccCCcEEEEEccCCC
Q 024295 163 CTG---V--PS-LLSEALETTKVGKGKVIVIGVGVD 192 (269)
Q Consensus 163 ~~g---~--~~-~~~~~~~~l~~~~G~~v~~g~~~~ 192 (269)
+++ . +. .....++.++++ +.++.++...+
T Consensus 237 a~~~~g~~~p~lit~~~l~~mk~g-~vIvDva~d~G 271 (370)
T TIGR00518 237 AVLIPGAKAPKLVSNSLVAQMKPG-AVIVDVAIDQG 271 (370)
T ss_pred ccccCCCCCCcCcCHHHHhcCCCC-CEEEEEecCCC
Confidence 983 2 21 136788889996 99999886544
No 141
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.04 E-value=6.7e-06 Score=75.14 Aligned_cols=80 Identities=23% Similarity=0.273 Sum_probs=58.8
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC---------------------cchHHHHHhCCCceeeCCCCC
Q 024295 81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN---------------------PWKKEKGKAFGMTDFINPDDE 139 (269)
Q Consensus 81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~---------------------~~~~~~~~~~g~~~v~~~~~~ 139 (269)
..+++++|+|+|+|+.|+++++.++..|+ +|+++++. +.+.+.++++|++..++....
T Consensus 133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~ 211 (564)
T PRK12771 133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG 211 (564)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence 36679999999999999999999999999 79889853 245566788998877764310
Q ss_pred CCccH-HHHHHhhhCCCCccEEEEccCChh
Q 024295 140 PNKSI-SELVKGITHGMGVDYCFECTGVPS 168 (269)
Q Consensus 140 ~~~~~-~~~i~~~~~~~~~d~v~d~~g~~~ 168 (269)
.+. .+.+. . ++|+||+++|...
T Consensus 212 --~~~~~~~~~----~-~~D~Vi~AtG~~~ 234 (564)
T PRK12771 212 --EDITLEQLE----G-EFDAVFVAIGAQL 234 (564)
T ss_pred --CcCCHHHHH----h-hCCEEEEeeCCCC
Confidence 111 12221 2 6999999999753
No 142
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.02 E-value=9e-05 Score=65.05 Aligned_cols=93 Identities=24% Similarity=0.322 Sum_probs=71.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295 82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
.-.|++|+|+|.|.+|..+++.++..|+ +|+++++++.+...+...|+.. .++.+.++ ..|+++
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~~---------~~leell~------~ADIVI 314 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQV---------VTLEDVVE------TADIFV 314 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCcee---------ccHHHHHh------cCCEEE
Confidence 3478999999999999999999999999 8999988776665555556432 11222221 689999
Q ss_pred EccCChhHHH-HHHHHcccCCcEEEEEccCC
Q 024295 162 ECTGVPSLLS-EALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 162 d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~ 191 (269)
.++|....+. ..+..++++ +.++.+|...
T Consensus 315 ~atGt~~iI~~e~~~~MKpG-AiLINvGr~d 344 (476)
T PTZ00075 315 TATGNKDIITLEHMRRMKNN-AIVGNIGHFD 344 (476)
T ss_pred ECCCcccccCHHHHhccCCC-cEEEEcCCCc
Confidence 9998765554 889999996 9999998764
No 143
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.00 E-value=1.7e-05 Score=69.73 Aligned_cols=90 Identities=21% Similarity=0.241 Sum_probs=63.8
Q ss_pred chhhhHHHHHHhcC---CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHhCCCceeeCCCCCCCcc
Q 024295 68 GFTTGYGAAWKEAK---VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKE-KGKAFGMTDFINPDDEPNKS 143 (269)
Q Consensus 68 ~~~~a~~~l~~~~~---~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~-~~~~~g~~~v~~~~~~~~~~ 143 (269)
+.++++.++..... -.++.+|+|+|+|.+|.++++.++..|+++|+++++++++.. .++++|.+ +++. .+
T Consensus 162 ~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~-----~~ 235 (423)
T PRK00045 162 AVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGE-AIPL-----DE 235 (423)
T ss_pred CcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-EeeH-----HH
Confidence 56666666543322 257899999999999999999999999878999999988765 56667753 3222 12
Q ss_pred HHHHHHhhhCCCCccEEEEccCChhH
Q 024295 144 ISELVKGITHGMGVDYCFECTGVPSL 169 (269)
Q Consensus 144 ~~~~i~~~~~~~~~d~v~d~~g~~~~ 169 (269)
..+.+ .++|+||+|++.+..
T Consensus 236 ~~~~l------~~aDvVI~aT~s~~~ 255 (423)
T PRK00045 236 LPEAL------AEADIVISSTGAPHP 255 (423)
T ss_pred HHHHh------ccCCEEEECCCCCCc
Confidence 22222 268999999987543
No 144
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.95 E-value=0.00017 Score=60.00 Aligned_cols=110 Identities=16% Similarity=0.193 Sum_probs=75.9
Q ss_pred chhhhHHHHHHhcCC----CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCcc
Q 024295 68 GFTTGYGAAWKEAKV----EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKS 143 (269)
Q Consensus 68 ~~~~a~~~l~~~~~~----~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~ 143 (269)
...+|.+++...... -.+++++|+|.|.+|.+++..++..|+ +|++.++++++.+.+.+.|... +.. .+
T Consensus 130 ~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~~-~~~-----~~ 202 (287)
T TIGR02853 130 SIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLIP-FPL-----NK 202 (287)
T ss_pred cHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCee-ecH-----HH
Confidence 455666654322221 257899999999999999999999999 9999999988777776666432 111 12
Q ss_pred HHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295 144 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 144 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
+. +... .+|+|++++...-.-...+..++++ ..++.++..+
T Consensus 203 l~----~~l~--~aDiVint~P~~ii~~~~l~~~k~~-aliIDlas~P 243 (287)
T TIGR02853 203 LE----EKVA--EIDIVINTIPALVLTADVLSKLPKH-AVIIDLASKP 243 (287)
T ss_pred HH----HHhc--cCCEEEECCChHHhCHHHHhcCCCC-eEEEEeCcCC
Confidence 22 2221 7899999986542234567778885 8888887654
No 145
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.95 E-value=3.3e-05 Score=56.78 Aligned_cols=97 Identities=23% Similarity=0.263 Sum_probs=61.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc--eeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT--DFINPDDEPNKSISELVKGITHGMGVDYC 160 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~v 160 (269)
++++++|+|+|.+|.+++..+...|+++|+.+.|+.+|.+.+.+ ++.. .++... ++.+.+. .+|++
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~-----~~~~~~~------~~Div 79 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLE-----DLEEALQ------EADIV 79 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGG-----GHCHHHH------TESEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHH-----HHHHHHh------hCCeE
Confidence 68999999999999999999999999889999999888777644 5322 233332 2222221 78999
Q ss_pred EEccCChhH--HHHHHHHcccCCcEEEEEccCC
Q 024295 161 FECTGVPSL--LSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 161 ~d~~g~~~~--~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
++|++.+.. ....+.......+.++.++.+.
T Consensus 80 I~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr 112 (135)
T PF01488_consen 80 INATPSGMPIITEEMLKKASKKLRLVIDLAVPR 112 (135)
T ss_dssp EE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-
T ss_pred EEecCCCCcccCHHHHHHHHhhhhceeccccCC
Confidence 999976422 2233332222013666665443
No 146
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.94 E-value=0.00015 Score=60.44 Aligned_cols=98 Identities=23% Similarity=0.301 Sum_probs=63.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295 82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGITHGMGV 157 (269)
Q Consensus 82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~~~~~ 157 (269)
..++++||-+|+|+ |..++.+++ .|+.+|++++.++...+.+++. +....+.... .+ .....++ +|
T Consensus 157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~---~~----~~~~~~~-~f 226 (288)
T TIGR00406 157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL---IY----LEQPIEG-KA 226 (288)
T ss_pred cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEe---cc----cccccCC-Cc
Confidence 45789999999988 888777665 5766999999998877777652 2111110000 11 1111223 89
Q ss_pred cEEEEccCCh---hHHHHHHHHcccCCcEEEEEccC
Q 024295 158 DYCFECTGVP---SLLSEALETTKVGKGKVIVIGVG 190 (269)
Q Consensus 158 d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~~ 190 (269)
|+|+...... ..+..+.+.+++| |.++..|..
T Consensus 227 DlVvan~~~~~l~~ll~~~~~~Lkpg-G~li~sgi~ 261 (288)
T TIGR00406 227 DVIVANILAEVIKELYPQFSRLVKPG-GWLILSGIL 261 (288)
T ss_pred eEEEEecCHHHHHHHHHHHHHHcCCC-cEEEEEeCc
Confidence 9998655332 2466778999996 999887754
No 147
>PRK08324 short chain dehydrogenase; Validated
Probab=97.92 E-value=0.00013 Score=68.30 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=71.9
Q ss_pred CcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEE
Q 024295 37 STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGI 115 (269)
Q Consensus 37 g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~ 115 (269)
-++++|..+++..++.+ +..+.+++.....+ .....+++++||+|+ |.+|.+.++.+...|+ +|+++
T Consensus 385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~~----------~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~ 452 (681)
T PRK08324 385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQRMP----------KPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLA 452 (681)
T ss_pred hhcCCccCCChhhhcce-eeehhhhhhhhcCC----------CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEE
Confidence 35677777777777766 55555655421100 122336789999985 9999999999999999 99999
Q ss_pred cCCcchHHHHHh-CCC-----ceeeCCCCCCCccHHHHHHhhhC-CCCccEEEEccC
Q 024295 116 DKNPWKKEKGKA-FGM-----TDFINPDDEPNKSISELVKGITH-GMGVDYCFECTG 165 (269)
Q Consensus 116 ~~~~~~~~~~~~-~g~-----~~v~~~~~~~~~~~~~~i~~~~~-~~~~d~v~d~~g 165 (269)
++++++.+.+.+ ++. ....|..+ .....+.+.+... ..++|++|+++|
T Consensus 453 ~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd--~~~v~~~~~~~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 453 DLDEEAAEAAAAELGGPDRALGVACDVTD--EAAVQAAFEEAALAFGGVDIVVSNAG 507 (681)
T ss_pred eCCHHHHHHHHHHHhccCcEEEEEecCCC--HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 998877665433 432 11223332 1223233333211 127999999998
No 148
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.85 E-value=0.00014 Score=63.03 Aligned_cols=109 Identities=13% Similarity=0.123 Sum_probs=74.9
Q ss_pred chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295 68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL 147 (269)
Q Consensus 68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~ 147 (269)
+-...+..+.+..+++++++||.+|+|. |..+..+++..|+ +|++++.+++..+.+++.....-++... .++
T Consensus 151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG~-G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~---~D~--- 222 (383)
T PRK11705 151 AQEAKLDLICRKLQLKPGMRVLDIGCGW-GGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRL---QDY--- 222 (383)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCc-cHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEE---Cch---
Confidence 3334444556778889999999999975 8888889988898 9999999999999887743211111111 222
Q ss_pred HHhhhCCCCccEEEE-----ccCC---hhHHHHHHHHcccCCcEEEEEc
Q 024295 148 VKGITHGMGVDYCFE-----CTGV---PSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 148 i~~~~~~~~~d~v~d-----~~g~---~~~~~~~~~~l~~~~G~~v~~g 188 (269)
.+. ++ .||.|+. .++. +..+..+.+.|++| |.++...
T Consensus 223 -~~l-~~-~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG-G~lvl~~ 267 (383)
T PRK11705 223 -RDL-NG-QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD-GLFLLHT 267 (383)
T ss_pred -hhc-CC-CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence 122 23 7998864 2333 34578888999997 9988754
No 149
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.84 E-value=3.9e-05 Score=60.58 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=71.5
Q ss_pred cccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHh----CCCceeeCCC
Q 024295 63 SFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKA----FGMTDFINPD 137 (269)
Q Consensus 63 a~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~----~g~~~v~~~~ 137 (269)
..+..+...|. +.+...++++++||.+|+|+ |+.++-+++..|.. +|+.+++.++-.+.+++ ++.+.+.-..
T Consensus 53 ~~is~P~~~a~--~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 53 QTISAPSMVAR--MLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp EEE--HHHHHH--HHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred eechHHHHHHH--HHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 33444444443 45777899999999999986 99999999988754 69999988765555543 4543221111
Q ss_pred CCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295 138 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 138 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 187 (269)
.+. ...+....+||.|+-+.+.+..-...++.|++| |++|..
T Consensus 130 ----gdg---~~g~~~~apfD~I~v~~a~~~ip~~l~~qL~~g-GrLV~p 171 (209)
T PF01135_consen 130 ----GDG---SEGWPEEAPFDRIIVTAAVPEIPEALLEQLKPG-GRLVAP 171 (209)
T ss_dssp ----S-G---GGTTGGG-SEEEEEESSBBSS--HHHHHTEEEE-EEEEEE
T ss_pred ----cch---hhccccCCCcCEEEEeeccchHHHHHHHhcCCC-cEEEEE
Confidence 111 111222348999998777665557889999996 998874
No 150
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.83 E-value=0.00028 Score=53.89 Aligned_cols=104 Identities=20% Similarity=0.285 Sum_probs=71.8
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCceeeCCCCCCCccHHHHHHhhhC
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTDFINPDDEPNKSISELVKGITH 153 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~i~~~~~ 153 (269)
.+.++++++.++-+|+|+ |..++++++..-..+|++++++++..+..+ +||.+.+..-. .+..+.+.++
T Consensus 28 s~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~----g~Ap~~L~~~-- 100 (187)
T COG2242 28 SKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE----GDAPEALPDL-- 100 (187)
T ss_pred HhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEe----ccchHhhcCC--
Confidence 456788999888889876 888889995544459999999998887764 47766433222 2333333322
Q ss_pred CCCccEEEEccCC--hhHHHHHHHHcccCCcEEEEEccC
Q 024295 154 GMGVDYCFECTGV--PSLLSEALETTKVGKGKVIVIGVG 190 (269)
Q Consensus 154 ~~~~d~v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g~~ 190 (269)
..+|.+|--=|. +..++.++..++++ |++|.-...
T Consensus 101 -~~~daiFIGGg~~i~~ile~~~~~l~~g-grlV~nait 137 (187)
T COG2242 101 -PSPDAIFIGGGGNIEEILEAAWERLKPG-GRLVANAIT 137 (187)
T ss_pred -CCCCEEEECCCCCHHHHHHHHHHHcCcC-CeEEEEeec
Confidence 268999853332 33588999999997 999876543
No 151
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.79 E-value=0.00043 Score=54.43 Aligned_cols=102 Identities=23% Similarity=0.401 Sum_probs=69.5
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CC-CceeeCCCCCCCccHHHHHHhh
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FG-MTDFINPDDEPNKSISELVKGI 151 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g-~~~v~~~~~~~~~~~~~~i~~~ 151 (269)
....++++++||.+|+|+ |..++.+++..+. .+|++++.+++..+.+++ ++ .+.+.... .+..+.+...
T Consensus 34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~----~d~~~~l~~~ 108 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK----GEAPEILFTI 108 (198)
T ss_pred HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE----echhhhHhhc
Confidence 456788999999999988 9999999987653 389999999888776643 55 22221111 2222222222
Q ss_pred hCCCCccEEEEccCC---hhHHHHHHHHcccCCcEEEEE
Q 024295 152 THGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 152 ~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~ 187 (269)
. ..+|.||...+. ...+..+.+.++++ |+++..
T Consensus 109 -~-~~~D~V~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~ 144 (198)
T PRK00377 109 -N-EKFDRIFIGGGSEKLKEIISASWEIIKKG-GRIVID 144 (198)
T ss_pred -C-CCCCEEEECCCcccHHHHHHHHHHHcCCC-cEEEEE
Confidence 2 279999975442 33577888899996 998753
No 152
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.77 E-value=0.0004 Score=54.93 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=76.0
Q ss_pred HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhh
Q 024295 77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGI 151 (269)
Q Consensus 77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~ 151 (269)
...++.+..+++|-+|.+. |+.++++|..+. -.+++.+++++++.+.+++ .|.+..+.-.. -.+..+.+.+.
T Consensus 52 ~~L~~~~~~k~iLEiGT~~-GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~--~gdal~~l~~~ 128 (219)
T COG4122 52 RLLARLSGPKRILEIGTAI-GYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL--GGDALDVLSRL 128 (219)
T ss_pred HHHHHhcCCceEEEeeccc-CHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe--cCcHHHHHHhc
Confidence 3456677889999999754 999999999876 3389999999999988865 46544222211 02555666553
Q ss_pred hCCCCccEEE-Ecc--CChhHHHHHHHHcccCCcEEEEEc
Q 024295 152 THGMGVDYCF-ECT--GVPSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 152 ~~~~~~d~v~-d~~--g~~~~~~~~~~~l~~~~G~~v~~g 188 (269)
..+ .||+|| |+. ..+..++.+++++++| |.++.=.
T Consensus 129 ~~~-~fDliFIDadK~~yp~~le~~~~lLr~G-Gliv~DN 166 (219)
T COG4122 129 LDG-SFDLVFIDADKADYPEYLERALPLLRPG-GLIVADN 166 (219)
T ss_pred cCC-CccEEEEeCChhhCHHHHHHHHHHhCCC-cEEEEee
Confidence 334 899997 555 3466799999999996 8877654
No 153
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.72 E-value=0.00011 Score=64.52 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=71.8
Q ss_pred cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHH---HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeE
Q 024295 36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAA---WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKI 112 (269)
Q Consensus 36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l---~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v 112 (269)
++.|++++.++. .+.. ...++. .+.+.++.++ .......++++|+|+|+|.+|..+++.++..|+.+|
T Consensus 137 ~~lf~~a~~~~k-~vr~-~t~i~~-------~~vSv~~~Av~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V 207 (417)
T TIGR01035 137 ERLFQKAFSVGK-RVRT-ETDISA-------GAVSISSAAVELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKI 207 (417)
T ss_pred HHHHHHHHHHhh-hhhh-hcCCCC-------CCcCHHHHHHHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCEE
Confidence 478899988876 3322 111110 1122222222 223334578999999999999999999999996699
Q ss_pred EEEcCCcchHH-HHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH
Q 024295 113 IGIDKNPWKKE-KGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL 169 (269)
Q Consensus 113 ~~~~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~ 169 (269)
++++++.++.. .++++|.. .+.. .+..+.+ .++|+||.|++.+..
T Consensus 208 ~v~~rs~~ra~~la~~~g~~-~i~~-----~~l~~~l------~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 208 LIANRTYERAEDLAKELGGE-AVKF-----EDLEEYL------AEADIVISSTGAPHP 253 (417)
T ss_pred EEEeCCHHHHHHHHHHcCCe-EeeH-----HHHHHHH------hhCCEEEECCCCCCc
Confidence 99999887755 56667754 2221 2222222 178999999987543
No 154
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.71 E-value=0.00014 Score=59.46 Aligned_cols=105 Identities=16% Similarity=0.244 Sum_probs=76.7
Q ss_pred hHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccH
Q 024295 72 GYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSI 144 (269)
Q Consensus 72 a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~ 144 (269)
++..+.++.++++|.+||-+|+|- |.+++-+|+.+|+ +|++++-|++..+.+++ .|.. .+...+
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d------- 130 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD------- 130 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecc-------
Confidence 444467889999999999999987 8889999999999 99999999988887765 4432 121111
Q ss_pred HHHHHhhhCCCCccEE-----EEccCC---hhHHHHHHHHcccCCcEEEEEccCC
Q 024295 145 SELVKGITHGMGVDYC-----FECTGV---PSLLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 145 ~~~i~~~~~~~~~d~v-----~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
.++.. + .||-| |+.+|. +..+..+.+.|+++ |++++.....
T Consensus 131 ---~rd~~-e-~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~-G~~llh~I~~ 179 (283)
T COG2230 131 ---YRDFE-E-PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG-GRMLLHSITG 179 (283)
T ss_pred ---ccccc-c-ccceeeehhhHHHhCcccHHHHHHHHHhhcCCC-ceEEEEEecC
Confidence 11221 2 48876 455664 44688899999996 9998876555
No 155
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.71 E-value=0.0002 Score=56.98 Aligned_cols=101 Identities=24% Similarity=0.346 Sum_probs=68.9
Q ss_pred HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHH
Q 024295 76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELV 148 (269)
Q Consensus 76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i 148 (269)
+.....++++++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++ .|.. .++..+ ..
T Consensus 68 ~~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd------~~--- 137 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD------GT--- 137 (212)
T ss_pred HHHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC------cc---
Confidence 44667889999999999986 8888888887764 389999999887776654 3432 122211 10
Q ss_pred HhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295 149 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 149 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 187 (269)
..+.+...||+|+-....+......++.|++| |+++..
T Consensus 138 ~~~~~~~~fD~I~~~~~~~~~~~~l~~~Lkpg-G~lvi~ 175 (212)
T PRK13942 138 LGYEENAPYDRIYVTAAGPDIPKPLIEQLKDG-GIMVIP 175 (212)
T ss_pred cCCCcCCCcCEEEECCCcccchHHHHHhhCCC-cEEEEE
Confidence 01112238999875544444567888999997 998774
No 156
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.70 E-value=0.00066 Score=57.31 Aligned_cols=102 Identities=25% Similarity=0.232 Sum_probs=71.2
Q ss_pred HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhh
Q 024295 77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGI 151 (269)
Q Consensus 77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~ 151 (269)
.+...++++++||.+|+|+ |..++.+++..+. ..|++++.+++..+.+++ .|.+.+.... .+..+.+.
T Consensus 73 l~~L~i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~----gD~~~~~~-- 145 (322)
T PRK13943 73 MEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC----GDGYYGVP-- 145 (322)
T ss_pred HHhcCCCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe----CChhhccc--
Confidence 4566788999999999985 9999999998764 269999999887666544 5554332211 22222221
Q ss_pred hCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295 152 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 152 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 187 (269)
+...+|+|+.+.+.+......++.++++ |+++..
T Consensus 146 -~~~~fD~Ii~~~g~~~ip~~~~~~Lkpg-G~Lvv~ 179 (322)
T PRK13943 146 -EFAPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP 179 (322)
T ss_pred -ccCCccEEEECCchHHhHHHHHHhcCCC-CEEEEE
Confidence 1137999998887655566788999996 987763
No 157
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.66 E-value=0.0011 Score=51.68 Aligned_cols=101 Identities=20% Similarity=0.192 Sum_probs=63.8
Q ss_pred hcCCCCCCeEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCcee-eCCCCCCCccHHHHHHhhhCCCC
Q 024295 79 EAKVEKGSSVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMTDF-INPDDEPNKSISELVKGITHGMG 156 (269)
Q Consensus 79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~ 156 (269)
...++++++||.+|+|+-+ .+..+++.. +..+|++++.++.+ +..+...+ .+..+ ....+.+.+..+..+
T Consensus 27 ~~~i~~g~~VLDiG~GtG~-~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~---~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGG-WSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTD---EEVLNKIRERVGDDK 98 (188)
T ss_pred hcccCCCCEEEEecCCCCH-HHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCC---hhHHHHHHHHhCCCC
Confidence 4557899999999998744 455555543 44489999988754 11233322 13322 344445555555558
Q ss_pred ccEEEE-cc----CC------------hhHHHHHHHHcccCCcEEEEEc
Q 024295 157 VDYCFE-CT----GV------------PSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 157 ~d~v~d-~~----g~------------~~~~~~~~~~l~~~~G~~v~~g 188 (269)
+|+|+. .. |. ...+..+.+.++++ |+++...
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lvi~~ 146 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK-GNFVVKV 146 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC-CEEEEEE
Confidence 999994 21 21 24677889999996 9998754
No 158
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.65 E-value=0.00025 Score=50.04 Aligned_cols=93 Identities=24% Similarity=0.301 Sum_probs=62.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHH-cCCCeEEEEcCCcchHHHHHhC----CC-ceeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARM-HGAAKIIGIDKNPWKKEKGKAF----GM-TDFINPDDEPNKSISELVKGITHGMGV 157 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~-~g~~~v~~~~~~~~~~~~~~~~----g~-~~v~~~~~~~~~~~~~~i~~~~~~~~~ 157 (269)
|+.+||-+|+|. |..+..+++. .+. +|++++.+++..+.+++. +. +.+- ... .++ . .......+|
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~-~~~---~d~-~--~~~~~~~~~ 71 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRIT-FVQ---GDA-E--FDPDFLEPF 71 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEE-EEE---SCC-H--GGTTTSSCE
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeE-EEE---Ccc-c--cCcccCCCC
Confidence 678999999987 8888899985 567 999999999888887652 21 1111 111 222 1 112223379
Q ss_pred cEEEEcc-CC---hh------HHHHHHHHcccCCcEEEE
Q 024295 158 DYCFECT-GV---PS------LLSEALETTKVGKGKVIV 186 (269)
Q Consensus 158 d~v~d~~-g~---~~------~~~~~~~~l~~~~G~~v~ 186 (269)
|+|+... .. .. .++.+.+.+++| |+++.
T Consensus 72 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~lvi 109 (112)
T PF12847_consen 72 DLVICSGFTLHFLLPLDERRRVLERIRRLLKPG-GRLVI 109 (112)
T ss_dssp EEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred CEEEECCCccccccchhHHHHHHHHHHHhcCCC-cEEEE
Confidence 9998765 21 11 378889999996 98875
No 159
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00083 Score=55.55 Aligned_cols=151 Identities=22% Similarity=0.323 Sum_probs=86.9
Q ss_pred eeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHH
Q 024295 23 MSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVD 102 (269)
Q Consensus 23 ~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~ 102 (269)
.+. |++.+-.. +|.+|..-.....+++.+.+.+..+ ....|++..=.....++++.+||-+|+|+ |.+++.
T Consensus 109 ~ri-g~~f~I~P---sw~~~~~~~~~~~i~lDPGlAFGTG----~HpTT~lcL~~Le~~~~~g~~vlDvGcGS-GILaIA 179 (300)
T COG2264 109 VRI-GERFVIVP---SWREYPEPSDELNIELDPGLAFGTG----THPTTSLCLEALEKLLKKGKTVLDVGCGS-GILAIA 179 (300)
T ss_pred EEe-eeeEEECC---CCccCCCCCCceEEEEccccccCCC----CChhHHHHHHHHHHhhcCCCEEEEecCCh-hHHHHH
Confidence 444 55543222 3555433323556777776665433 34444443211223456999999999976 777776
Q ss_pred HHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChh---HHHHHHH
Q 024295 103 GARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS---LLSEALE 175 (269)
Q Consensus 103 la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~---~~~~~~~ 175 (269)
.+| +|+++|+++|.++-..+.+++ -+......... ....+ ...+ ..||+|+-.+=... ....+..
T Consensus 180 a~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~---~~~~~---~~~~-~~~DvIVANILA~vl~~La~~~~~ 251 (300)
T COG2264 180 AAK-LGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKG---FLLLE---VPEN-GPFDVIVANILAEVLVELAPDIKR 251 (300)
T ss_pred HHH-cCCceEEEecCCHHHHHHHHHHHHHcCCchhhhccc---ccchh---hccc-CcccEEEehhhHHHHHHHHHHHHH
Confidence 665 588799999988765555544 23321110110 11111 1112 38999986663322 3567778
Q ss_pred HcccCCcEEEEEccCC
Q 024295 176 TTKVGKGKVIVIGVGV 191 (269)
Q Consensus 176 ~l~~~~G~~v~~g~~~ 191 (269)
.++++ |++++.|...
T Consensus 252 ~lkpg-g~lIlSGIl~ 266 (300)
T COG2264 252 LLKPG-GRLILSGILE 266 (300)
T ss_pred HcCCC-ceEEEEeehH
Confidence 99996 9999998665
No 160
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.62 E-value=0.0016 Score=53.06 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=56.5
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C----CCc-ee--eCCCCCCCccHHHHHHh-hh
Q 024295 83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F----GMT-DF--INPDDEPNKSISELVKG-IT 152 (269)
Q Consensus 83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~----g~~-~v--~~~~~~~~~~~~~~i~~-~~ 152 (269)
..+.++||+|+ +++|...+..+...|+ +++.+.|++++++.+.+ + |.. .+ +|..+ .+-.+.+.+ +.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~---~~~~~~l~~~l~ 79 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSD---PEALERLEDELK 79 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCC---hhHHHHHHHHHH
Confidence 35789999997 8999999988888999 99999999998887643 3 221 12 23333 333334333 32
Q ss_pred -CCCCccEEEEccCC
Q 024295 153 -HGMGVDYCFECTGV 166 (269)
Q Consensus 153 -~~~~~d~v~d~~g~ 166 (269)
.+..+|+.++++|.
T Consensus 80 ~~~~~IdvLVNNAG~ 94 (265)
T COG0300 80 ERGGPIDVLVNNAGF 94 (265)
T ss_pred hcCCcccEEEECCCc
Confidence 22489999999985
No 161
>PRK04148 hypothetical protein; Provisional
Probab=97.58 E-value=0.00062 Score=49.43 Aligned_cols=86 Identities=23% Similarity=0.286 Sum_probs=57.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE 162 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d 162 (269)
.++.+++++|.| .|...+..+...|. .|+++|.+++..+.+++.+...+.+.-. ..++ ++.. ++|+++.
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf--~p~~-----~~y~--~a~liys 83 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLF--NPNL-----EIYK--NAKLIYS 83 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCC--CCCH-----HHHh--cCCEEEE
Confidence 356789999999 78755656667898 9999999999999898887654443221 0111 1121 7888887
Q ss_pred ccCChhHHHHHHHHccc
Q 024295 163 CTGVPSLLSEALETTKV 179 (269)
Q Consensus 163 ~~g~~~~~~~~~~~l~~ 179 (269)
.-..+.....+++..+.
T Consensus 84 irpp~el~~~~~~la~~ 100 (134)
T PRK04148 84 IRPPRDLQPFILELAKK 100 (134)
T ss_pred eCCCHHHHHHHHHHHHH
Confidence 77665454445554444
No 162
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.58 E-value=0.00095 Score=51.93 Aligned_cols=106 Identities=16% Similarity=0.226 Sum_probs=71.7
Q ss_pred CCCeEEEEcC--ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCC-ceeeCCCC-CCCccHHHHHHhhhCCCCcc
Q 024295 84 KGSSVAVLGL--GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGM-TDFINPDD-EPNKSISELVKGITHGMGVD 158 (269)
Q Consensus 84 ~~~~vlI~G~--g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~-~~v~~~~~-~~~~~~~~~i~~~~~~~~~d 158 (269)
..+.|||+|+ |++|.+...=....|+ .|+++.|+-+.++.+. ++|. ..-+|-.+ .....+..++++..+| +.|
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~G-kld 83 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDG-KLD 83 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCC-ceE
Confidence 3477999984 8999998888888899 9999999999888876 5663 22333322 0122344556666566 899
Q ss_pred EEEEccCChh-------------------------HHHHH-HHHcccCCcEEEEEccCCC
Q 024295 159 YCFECTGVPS-------------------------LLSEA-LETTKVGKGKVIVIGVGVD 192 (269)
Q Consensus 159 ~v~d~~g~~~-------------------------~~~~~-~~~l~~~~G~~v~~g~~~~ 192 (269)
+.++.+|.+. ..+.. -.+++. +|++|.+|...+
T Consensus 84 ~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~lika-KGtIVnvgSl~~ 142 (289)
T KOG1209|consen 84 LLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKA-KGTIVNVGSLAG 142 (289)
T ss_pred EEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHc-cceEEEecceeE
Confidence 9999887622 01111 124456 599999997664
No 163
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.58 E-value=0.0008 Score=53.21 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=67.2
Q ss_pred HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHH
Q 024295 76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISEL 147 (269)
Q Consensus 76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~ 147 (269)
+.+...++++++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++ .+.. .++..+ ..+.
T Consensus 64 ~~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d------~~~~ 136 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGD------GKRG 136 (205)
T ss_pred HHHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECC------cccC
Confidence 34566788999999999986 888888888765 2389999999876665543 4422 222221 1111
Q ss_pred HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295 148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 187 (269)
+ .....||+|+-+.........+++.|++| |+++..
T Consensus 137 ~---~~~~~fD~Ii~~~~~~~~~~~l~~~L~~g-G~lvi~ 172 (205)
T PRK13944 137 L---EKHAPFDAIIVTAAASTIPSALVRQLKDG-GVLVIP 172 (205)
T ss_pred C---ccCCCccEEEEccCcchhhHHHHHhcCcC-cEEEEE
Confidence 1 11238999886655444557888999997 998763
No 164
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.57 E-value=8.1e-05 Score=61.38 Aligned_cols=98 Identities=20% Similarity=0.319 Sum_probs=62.5
Q ss_pred HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHHH
Q 024295 76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISELV 148 (269)
Q Consensus 76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i 148 (269)
+.+++++++|++||-+|+|- |..+..+++..|+ +|++++.+++..+.+++ .|.. .+.. .++
T Consensus 54 ~~~~~~l~~G~~vLDiGcGw-G~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~------~D~---- 121 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCGW-GGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRL------QDY---- 121 (273)
T ss_dssp HHTTTT--TT-EEEEES-TT-SHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE------S-G----
T ss_pred HHHHhCCCCCCEEEEeCCCc-cHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE------eec----
Confidence 45788999999999999984 8888899999999 99999999998888754 4422 1211 111
Q ss_pred HhhhCCCCccEEE-----EccCC---hhHHHHHHHHcccCCcEEEEEc
Q 024295 149 KGITHGMGVDYCF-----ECTGV---PSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 149 ~~~~~~~~~d~v~-----d~~g~---~~~~~~~~~~l~~~~G~~v~~g 188 (269)
+++. + .||.|+ +.+|. +..+..+.+.|+|| |++++-.
T Consensus 122 ~~~~-~-~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg-G~~~lq~ 166 (273)
T PF02353_consen 122 RDLP-G-KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG-GRLVLQT 166 (273)
T ss_dssp GG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT-EEEEEEE
T ss_pred cccC-C-CCCEEEEEechhhcChhHHHHHHHHHHHhcCCC-cEEEEEe
Confidence 2222 2 899874 34443 34588899999997 9987543
No 165
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=97.53 E-value=0.00056 Score=52.90 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=56.3
Q ss_pred CCeEEEEc-CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC---ceeeCCCCCCCccHHHHHHhhh--CCCCcc
Q 024295 85 GSSVAVLG-LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM---TDFINPDDEPNKSISELVKGIT--HGMGVD 158 (269)
Q Consensus 85 ~~~vlI~G-~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~i~~~~--~~~~~d 158 (269)
|.+|||+| ++++|++.++-...+|- +|+...|++++++.++..-. ..+.|-.+ .+..+++.++. +-+..+
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d---~~~~~~lvewLkk~~P~lN 80 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKAENPEIHTEVCDVAD---RDSRRELVEWLKKEYPNLN 80 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHhcCcchheeeecccc---hhhHHHHHHHHHhhCCchh
Confidence 68999997 58999999999999999 99999999999999877432 33444443 44333333332 124688
Q ss_pred EEEEccCC
Q 024295 159 YCFECTGV 166 (269)
Q Consensus 159 ~v~d~~g~ 166 (269)
++++++|-
T Consensus 81 vliNNAGI 88 (245)
T COG3967 81 VLINNAGI 88 (245)
T ss_pred eeeecccc
Confidence 99988863
No 166
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.52 E-value=0.0017 Score=54.04 Aligned_cols=134 Identities=23% Similarity=0.337 Sum_probs=74.6
Q ss_pred ccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHh-cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcC
Q 024295 39 WSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKE-AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDK 117 (269)
Q Consensus 39 ~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~-~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~ 117 (269)
|.++-.-+....+.+++.+.+..+. .-.|.. ||... .-.+++++||-+|+|+ |.+++..++ +|+++|+++|.
T Consensus 120 w~~~~~~~~~~~I~idPg~AFGTG~----H~TT~l-cl~~l~~~~~~g~~vLDvG~GS-GILaiaA~k-lGA~~v~a~Di 192 (295)
T PF06325_consen 120 WEEYPEPPDEIVIEIDPGMAFGTGH----HPTTRL-CLELLEKYVKPGKRVLDVGCGS-GILAIAAAK-LGAKKVVAIDI 192 (295)
T ss_dssp T----SSTTSEEEEESTTSSS-SSH----CHHHHH-HHHHHHHHSSTTSEEEEES-TT-SHHHHHHHH-TTBSEEEEEES
T ss_pred CcccCCCCCcEEEEECCCCcccCCC----CHHHHH-HHHHHHHhccCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEecC
Confidence 4444222344556666666655553 222222 22211 1256889999999876 777776666 49889999999
Q ss_pred CcchHHHHHh----CCC-cee-eCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH---HHHHHHHcccCCcEEEEEc
Q 024295 118 NPWKKEKGKA----FGM-TDF-INPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL---LSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 118 ~~~~~~~~~~----~g~-~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~---~~~~~~~l~~~~G~~v~~g 188 (269)
++...+.+++ -|. +.+ +... .+. .. ..||+|+-..-.+.. ...+.+.++++ |.+++.|
T Consensus 193 Dp~Av~~a~~N~~~N~~~~~~~v~~~----~~~-------~~-~~~dlvvANI~~~vL~~l~~~~~~~l~~~-G~lIlSG 259 (295)
T PF06325_consen 193 DPLAVEAARENAELNGVEDRIEVSLS----EDL-------VE-GKFDLVVANILADVLLELAPDIASLLKPG-GYLILSG 259 (295)
T ss_dssp SCHHHHHHHHHHHHTT-TTCEEESCT----SCT-------CC-S-EEEEEEES-HHHHHHHHHHCHHHEEEE-EEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEEe----ccc-------cc-ccCCEEEECCCHHHHHHHHHHHHHhhCCC-CEEEEcc
Confidence 8876665544 232 122 2111 111 11 389999976654322 34556678896 9999998
Q ss_pred cCCC
Q 024295 189 VGVD 192 (269)
Q Consensus 189 ~~~~ 192 (269)
....
T Consensus 260 Il~~ 263 (295)
T PF06325_consen 260 ILEE 263 (295)
T ss_dssp EEGG
T ss_pred ccHH
Confidence 7653
No 167
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.49 E-value=0.0025 Score=51.33 Aligned_cols=104 Identities=18% Similarity=0.261 Sum_probs=66.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hh---CCCceee--CCCCCCCccHHHHHHhhhC-CC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KA---FGMTDFI--NPDDEPNKSISELVKGITH-GM 155 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~---~g~~~v~--~~~~~~~~~~~~~i~~~~~-~~ 155 (269)
+++++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+ ++ .+..+.+ |..+ .....+.+.+... -.
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSS--TESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCC--HHHHHHHHHHHHHHhC
Confidence 4689999986 8999999999999999 999999988776655 22 2222222 2222 1223332322211 12
Q ss_pred CccEEEEccCChh-----------------------HHHHHHHHcccCCcEEEEEccCC
Q 024295 156 GVDYCFECTGVPS-----------------------LLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 156 ~~d~v~d~~g~~~-----------------------~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
++|.++.+++... .++..+..++++ |+++.++...
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~ss~~ 138 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEG-SSIVLVSSMS 138 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CEEEEEecch
Confidence 6899998886421 134555566775 8898887653
No 168
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.47 E-value=0.00064 Score=54.21 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=66.7
Q ss_pred HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCce--eeCCCCCCCccHHHHH
Q 024295 76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTD--FINPDDEPNKSISELV 148 (269)
Q Consensus 76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i 148 (269)
+.+...++++++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++ .|.+. ++.. +..+.
T Consensus 69 ~~~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~------d~~~~- 140 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVG------DGTQG- 140 (215)
T ss_pred HHHHhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEEC------CcccC-
Confidence 44667789999999999886 8888888887653 269999999887776654 44322 2211 11111
Q ss_pred HhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295 149 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 149 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 187 (269)
+.....||+|+-....+.....+.+.+++| |+++..
T Consensus 141 --~~~~~~fD~Ii~~~~~~~~~~~~~~~L~~g-G~lv~~ 176 (215)
T TIGR00080 141 --WEPLAPYDRIYVTAAGPKIPEALIDQLKEG-GILVMP 176 (215)
T ss_pred --CcccCCCCEEEEcCCcccccHHHHHhcCcC-cEEEEE
Confidence 111237998875443333556788999996 998764
No 169
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.45 E-value=0.0011 Score=51.11 Aligned_cols=91 Identities=24% Similarity=0.443 Sum_probs=63.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE 162 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d 162 (269)
-.+++|.|+|.|.+|...++.++..|. +|++.+++..........+... .++.+.+. ..|+|+.
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~~---------~~l~ell~------~aDiv~~ 97 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVEY---------VSLDELLA------QADIVSL 97 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEEE---------SSHHHHHH------H-SEEEE
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhccccccee---------eehhhhcc------hhhhhhh
Confidence 368999999999999999999999999 9999998876665444554321 23433333 4688888
Q ss_pred ccCChh-----HHHHHHHHcccCCcEEEEEccC
Q 024295 163 CTGVPS-----LLSEALETTKVGKGKVIVIGVG 190 (269)
Q Consensus 163 ~~g~~~-----~~~~~~~~l~~~~G~~v~~g~~ 190 (269)
+....+ .-.+.+..++++ ..+|.++..
T Consensus 98 ~~plt~~T~~li~~~~l~~mk~g-a~lvN~aRG 129 (178)
T PF02826_consen 98 HLPLTPETRGLINAEFLAKMKPG-AVLVNVARG 129 (178)
T ss_dssp -SSSSTTTTTSBSHHHHHTSTTT-EEEEESSSG
T ss_pred hhccccccceeeeeeeeeccccc-eEEEeccch
Confidence 775311 134677888886 888887643
No 170
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.43 E-value=0.0035 Score=44.83 Aligned_cols=101 Identities=17% Similarity=0.312 Sum_probs=67.1
Q ss_pred HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHh
Q 024295 77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKG 150 (269)
Q Consensus 77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~ 150 (269)
.....+.++++||-+|+|. |..+..+++..+..+|++++.+++..+.+++ ++.. .++..+- .. ....
T Consensus 12 ~~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~~---~~~~ 84 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA---PE---ALED 84 (124)
T ss_pred HHHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc---cc---cChh
Confidence 3445667788999999987 9899999988754599999999887777643 3322 2222111 11 0111
Q ss_pred hhCCCCccEEEEccCC---hhHHHHHHHHcccCCcEEEEE
Q 024295 151 ITHGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 151 ~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~ 187 (269)
.. ..+|+|+-.... ...++.+.+.++++ |+++..
T Consensus 85 -~~-~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~li~~ 121 (124)
T TIGR02469 85 -SL-PEPDRVFIGGSGGLLQEILEAIWRRLRPG-GRIVLN 121 (124)
T ss_pred -hc-CCCCEEEECCcchhHHHHHHHHHHHcCCC-CEEEEE
Confidence 11 279999865432 23578899999996 998764
No 171
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.42 E-value=0.0011 Score=52.71 Aligned_cols=96 Identities=25% Similarity=0.277 Sum_probs=66.0
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce--eeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD--FINPDDEPNKSISELVKGITHGMGVDYC 160 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~i~~~~~~~~~d~v 160 (269)
-++.+||-+|+|+ |+++..+|+. |+ +|+++|.+++-.+.++...... -+|+.. ...+.+.. .+..||+|
T Consensus 58 l~g~~vLDvGCGg-G~Lse~mAr~-Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~----~~~edl~~--~~~~FDvV 128 (243)
T COG2227 58 LPGLRVLDVGCGG-GILSEPLARL-GA-SVTGIDASEKPIEVAKLHALESGVNIDYRQ----ATVEDLAS--AGGQFDVV 128 (243)
T ss_pred CCCCeEEEecCCc-cHhhHHHHHC-CC-eeEEecCChHHHHHHHHhhhhccccccchh----hhHHHHHh--cCCCccEE
Confidence 4789999999976 7777777764 78 9999999999888887543221 245653 23333332 12489999
Q ss_pred E-----EccCChh-HHHHHHHHcccCCcEEEEEc
Q 024295 161 F-----ECTGVPS-LLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 161 ~-----d~~g~~~-~~~~~~~~l~~~~G~~v~~g 188 (269)
+ +-+..+. .+..+.++++|+ |.++..-
T Consensus 129 ~cmEVlEHv~dp~~~~~~c~~lvkP~-G~lf~ST 161 (243)
T COG2227 129 TCMEVLEHVPDPESFLRACAKLVKPG-GILFLST 161 (243)
T ss_pred EEhhHHHccCCHHHHHHHHHHHcCCC-cEEEEec
Confidence 5 3444443 467899999996 9887653
No 172
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.41 E-value=0.0012 Score=51.22 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=64.5
Q ss_pred cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhCCC
Q 024295 80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITHGM 155 (269)
Q Consensus 80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~ 155 (269)
..++++.+||-+|+|+ |..+..+++.....+|++++.+++..+.+++ .+.+. +.... .+..+ + ....
T Consensus 41 ~~l~~g~~VLDiGcGt-G~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~---~d~~~-~---~~~~ 111 (187)
T PRK00107 41 PYLPGGERVLDVGSGA-GFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVH---GRAEE-F---GQEE 111 (187)
T ss_pred hhcCCCCeEEEEcCCC-CHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEe---ccHhh-C---CCCC
Confidence 3455689999999876 7777777775543499999999887776654 44332 21121 22222 1 1133
Q ss_pred CccEEEEcc-CC-hhHHHHHHHHcccCCcEEEEEc
Q 024295 156 GVDYCFECT-GV-PSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 156 ~~d~v~d~~-g~-~~~~~~~~~~l~~~~G~~v~~g 188 (269)
.||+|+-.. .. +..+..+.+.+++| |+++.+-
T Consensus 112 ~fDlV~~~~~~~~~~~l~~~~~~LkpG-G~lv~~~ 145 (187)
T PRK00107 112 KFDVVTSRAVASLSDLVELCLPLLKPG-GRFLALK 145 (187)
T ss_pred CccEEEEccccCHHHHHHHHHHhcCCC-eEEEEEe
Confidence 799998533 22 34577889999996 9998874
No 173
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=97.41 E-value=0.016 Score=48.38 Aligned_cols=97 Identities=12% Similarity=0.182 Sum_probs=68.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHH-HcCCCeEEEEcCCcchHHHHHhCCC-ceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGAR-MHGAAKIIGIDKNPWKKEKGKAFGM-TDFINPDDEPNKSISELVKGITHGMGVDYC 160 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~-~~g~~~v~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v 160 (269)
..+.|+|.++ +=+++.++.+++ ..+.-++++++ |+...+..+.+|. |.++.|++ +..+... .--++
T Consensus 135 ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglT-S~~N~~Fve~lg~Yd~V~~Yd~---------i~~l~~~-~~~v~ 203 (314)
T PF11017_consen 135 GAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLT-SARNVAFVESLGCYDEVLTYDD---------IDSLDAP-QPVVI 203 (314)
T ss_pred CccEEEEeccchHHHHHHHHHhhccCCCceEEEEe-cCcchhhhhccCCceEEeehhh---------hhhccCC-CCEEE
Confidence 3467777776 668888888877 55555899998 6677778999996 77888864 3333222 45678
Q ss_pred EEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295 161 FECTGVPSLLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 161 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
+|..|.......+.+.+....-..+.+|...
T Consensus 204 VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th 234 (314)
T PF11017_consen 204 VDFAGNGEVLAALHEHLGDNLVYSCLVGATH 234 (314)
T ss_pred EECCCCHHHHHHHHHHHhhhhhEEEEEEccC
Confidence 8999998787788888877424566777554
No 174
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.39 E-value=0.0057 Score=47.97 Aligned_cols=103 Identities=20% Similarity=0.330 Sum_probs=64.9
Q ss_pred HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCce--eeCCCCCCCccHHHHHH
Q 024295 76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTD--FINPDDEPNKSISELVK 149 (269)
Q Consensus 76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~ 149 (269)
+.....++++++||-+|+|. |..+..+++.....+|++++.+++..+.+++ ++... ++. .+..+.+.
T Consensus 32 l~~~l~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~------~d~~~~~~ 104 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAGT-GTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIE------GSAPECLA 104 (196)
T ss_pred HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEE------CchHHHHh
Confidence 34556778899999999875 6677777776533499999999988777654 44322 222 22222222
Q ss_pred hhhCCCCccE-EEEccCC-hhHHHHHHHHcccCCcEEEEEc
Q 024295 150 GITHGMGVDY-CFECTGV-PSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 150 ~~~~~~~~d~-v~d~~g~-~~~~~~~~~~l~~~~G~~v~~g 188 (269)
.+.. .+|. +++.... ...++.+.+.+++| |+++...
T Consensus 105 ~~~~--~~d~v~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~ 142 (196)
T PRK07402 105 QLAP--APDRVCIEGGRPIKEILQAVWQYLKPG-GRLVATA 142 (196)
T ss_pred hCCC--CCCEEEEECCcCHHHHHHHHHHhcCCC-eEEEEEe
Confidence 2221 2344 4443222 34678889999996 9988774
No 175
>PRK14967 putative methyltransferase; Provisional
Probab=97.37 E-value=0.011 Score=47.42 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=64.0
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-eeeCCCCCCCccHHHHHHhhh
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DFINPDDEPNKSISELVKGIT 152 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~ 152 (269)
....++++++||.+|+|. |..+..+++. +..++++++.+++..+.+++ .+.. .+++ .++.+.+
T Consensus 30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~------~d~~~~~---- 97 (223)
T PRK14967 30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRR------GDWARAV---- 97 (223)
T ss_pred HhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE------Cchhhhc----
Confidence 345677889999999987 8888888875 55599999999887776554 3332 2222 2232211
Q ss_pred CCCCccEEEEccCC---------------------------hhHHHHHHHHcccCCcEEEEEc
Q 024295 153 HGMGVDYCFECTGV---------------------------PSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 153 ~~~~~d~v~d~~g~---------------------------~~~~~~~~~~l~~~~G~~v~~g 188 (269)
....||+|+-..+. ...+..+.+.++++ |+++.+-
T Consensus 98 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g-G~l~~~~ 159 (223)
T PRK14967 98 EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG-GSLLLVQ 159 (223)
T ss_pred cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC-cEEEEEE
Confidence 22379999864210 11245677899996 9988753
No 176
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.37 E-value=0.0025 Score=54.85 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=65.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC---C-ceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295 86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG---M-TDFINPDDEPNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g---~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
.+|||+|+|.+|+.+++.+.+.+..+|++.+|+.++.+.+.... . ...+|-.+ .+...+.+ . ++|+||
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d--~~al~~li----~--~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD--VDALVALI----K--DFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC--hHHHHHHH----h--cCCEEE
Confidence 47999999999999999988888449999999999999887653 2 23444433 12222222 2 559999
Q ss_pred EccCChhHHHHHH-HHcccCCcEEEEEccCC
Q 024295 162 ECTGVPSLLSEAL-ETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 162 d~~g~~~~~~~~~-~~l~~~~G~~v~~g~~~ 191 (269)
++.+..-.. .++ .+++.| =.++......
T Consensus 74 n~~p~~~~~-~i~ka~i~~g-v~yvDts~~~ 102 (389)
T COG1748 74 NAAPPFVDL-TILKACIKTG-VDYVDTSYYE 102 (389)
T ss_pred EeCCchhhH-HHHHHHHHhC-CCEEEcccCC
Confidence 999876443 444 455553 4566555443
No 177
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=97.36 E-value=0.0014 Score=52.31 Aligned_cols=80 Identities=15% Similarity=0.239 Sum_probs=57.5
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCC----ceeeCCCCCCCccHHHHHHhhhCC-CC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGM----TDFINPDDEPNKSISELVKGITHG-MG 156 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~----~~v~~~~~~~~~~~~~~i~~~~~~-~~ 156 (269)
+++.++|+|+ +++|.+.++.+...|+ +|+.+.|+.++++.+. +++. ...+|-.+ .....+.+..+... ..
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD--~~~~~~~i~~~~~~~g~ 81 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGAGAALALALDVTD--RAAVEAAIEALPEEFGR 81 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhccCceEEEeeccCC--HHHHHHHHHHHHHhhCc
Confidence 4577899997 8999999999999999 9999999999988864 4772 22344333 12333344433322 26
Q ss_pred ccEEEEccCC
Q 024295 157 VDYCFECTGV 166 (269)
Q Consensus 157 ~d~v~d~~g~ 166 (269)
+|+.++..|.
T Consensus 82 iDiLvNNAGl 91 (246)
T COG4221 82 IDILVNNAGL 91 (246)
T ss_pred ccEEEecCCC
Confidence 9999999875
No 178
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.33 E-value=0.00084 Score=51.32 Aligned_cols=102 Identities=21% Similarity=0.229 Sum_probs=66.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCC-CCC-C------------CccHHHHHHh
Q 024295 85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINP-DDE-P------------NKSISELVKG 150 (269)
Q Consensus 85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~-~~~-~------------~~~~~~~i~~ 150 (269)
..+|+|+|+|.+|+.|+.+++.+|+ +++..+..+++.+..+..+...+... .+. . +......+.+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 98 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE 98 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence 4789999999999999999999999 99999998888888888776543321 100 0 1222233333
Q ss_pred hhCCCCccEEEEcc--CC-hh---HHHHHHHHcccCCcEEEEEccC
Q 024295 151 ITHGMGVDYCFECT--GV-PS---LLSEALETTKVGKGKVIVIGVG 190 (269)
Q Consensus 151 ~~~~~~~d~v~d~~--g~-~~---~~~~~~~~l~~~~G~~v~~g~~ 190 (269)
... .+|+++.+. ++ .. ..++.++.++++ ..++.+..-
T Consensus 99 ~i~--~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~g-svIvDis~D 141 (168)
T PF01262_consen 99 FIA--PADIVIGNGLYWGKRAPRLVTEEMVKSMKPG-SVIVDISCD 141 (168)
T ss_dssp HHH--H-SEEEEHHHBTTSS---SBEHHHHHTSSTT-EEEEETTGG
T ss_pred HHh--hCcEEeeecccCCCCCCEEEEhHHhhccCCC-ceEEEEEec
Confidence 222 578888644 22 11 146778889995 888887643
No 179
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.29 E-value=0.0017 Score=53.50 Aligned_cols=97 Identities=25% Similarity=0.300 Sum_probs=72.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CCc-eeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295 85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GMT-DFINPDDEPNKSISELVKGITHGMGVDYCFE 162 (269)
Q Consensus 85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d 162 (269)
..+|.|+|.|.+|.-++.+|..+|+ +|+..+.+.+|++.+..+ +-. +.+-+. +.++.+.+. +.|+++.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~~st---~~~iee~v~------~aDlvIg 237 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTLYST---PSNIEEAVK------KADLVIG 237 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEEEcC---HHHHHHHhh------hccEEEE
Confidence 4568899999999999999999999 999999999999988874 433 222222 244544443 6899998
Q ss_pred cc---CC--hh-HHHHHHHHcccCCcEEEEEccCCC
Q 024295 163 CT---GV--PS-LLSEALETTKVGKGKVIVIGVGVD 192 (269)
Q Consensus 163 ~~---g~--~~-~~~~~~~~l~~~~G~~v~~g~~~~ 192 (269)
++ |. |. ..++.++.+++| +.++.+..-.+
T Consensus 238 aVLIpgakaPkLvt~e~vk~MkpG-sVivDVAiDqG 272 (371)
T COG0686 238 AVLIPGAKAPKLVTREMVKQMKPG-SVIVDVAIDQG 272 (371)
T ss_pred EEEecCCCCceehhHHHHHhcCCC-cEEEEEEEcCC
Confidence 87 22 11 367889999997 99998875443
No 180
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.26 E-value=0.0042 Score=49.94 Aligned_cols=105 Identities=20% Similarity=0.220 Sum_probs=73.9
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhhhC
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGITH 153 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~ 153 (269)
......+|.+||-+|+|+ |-.|..+++..|..+|+++|.++..++.+++. |... +.... .+. +++. .+
T Consensus 45 ~~~~~~~g~~vLDva~GT-Gd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~---~dA-e~LP--f~ 116 (238)
T COG2226 45 SLLGIKPGDKVLDVACGT-GDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVV---GDA-ENLP--FP 116 (238)
T ss_pred HhhCCCCCCEEEEecCCc-cHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEE---ech-hhCC--CC
Confidence 345556899999999886 99999999999866999999999988888763 2221 11111 111 1111 23
Q ss_pred CCCccEEEEccCC------hhHHHHHHHHcccCCcEEEEEccCC
Q 024295 154 GMGVDYCFECTGV------PSLLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 154 ~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
+..||+|.-+.|- +..+.++.+.++|| |+++.+....
T Consensus 117 D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg-G~~~vle~~~ 159 (238)
T COG2226 117 DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG-GRLLVLEFSK 159 (238)
T ss_pred CCccCEEEeeehhhcCCCHHHHHHHHHHhhcCC-eEEEEEEcCC
Confidence 4489988655542 44689999999997 9988887655
No 181
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.26 E-value=0.00067 Score=53.49 Aligned_cols=105 Identities=21% Similarity=0.267 Sum_probs=69.0
Q ss_pred hcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhC
Q 024295 79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITH 153 (269)
Q Consensus 79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~ 153 (269)
..+..+.++||-+|++. |+.++.+|+.+.. .+|+.++.+++..+.+++ .|...-+.... .+..+.+.++.+
T Consensus 40 l~~~~~~k~vLEIGt~~-GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~---gda~~~l~~l~~ 115 (205)
T PF01596_consen 40 LVRLTRPKRVLEIGTFT-GYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIE---GDALEVLPELAN 115 (205)
T ss_dssp HHHHHT-SEEEEESTTT-SHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE---S-HHHHHHHHHH
T ss_pred HHHhcCCceEEEecccc-ccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE---eccHhhHHHHHh
Confidence 34445668999999865 9999999997642 399999999998888865 45432222222 445555555432
Q ss_pred C---CCccEEE-EccC--ChhHHHHHHHHcccCCcEEEEEc
Q 024295 154 G---MGVDYCF-ECTG--VPSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 154 ~---~~~d~v~-d~~g--~~~~~~~~~~~l~~~~G~~v~~g 188 (269)
. ..||.|| |+.- ....+..+++++++| |.++.=.
T Consensus 116 ~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~g-gvii~DN 155 (205)
T PF01596_consen 116 DGEEGQFDFVFIDADKRNYLEYFEKALPLLRPG-GVIIADN 155 (205)
T ss_dssp TTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEE-EEEEEET
T ss_pred ccCCCceeEEEEcccccchhhHHHHHhhhccCC-eEEEEcc
Confidence 2 2799996 5542 233577889999995 7776543
No 182
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0031 Score=50.56 Aligned_cols=105 Identities=21% Similarity=0.221 Sum_probs=74.2
Q ss_pred HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHh
Q 024295 76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKG 150 (269)
Q Consensus 76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~ 150 (269)
+....++.+|++|+-.|.|+ |.++..|++..|. .+|+..+..++..+.+++ +|....+.... .| +++
T Consensus 86 I~~~~gi~pg~rVlEAGtGS-G~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~---~D----v~~ 157 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGS-GALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL---GD----VRE 157 (256)
T ss_pred HHHHcCCCCCCEEEEcccCc-hHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEe---cc----ccc
Confidence 34578999999999999887 8899999998876 499999999888887754 44332222221 22 223
Q ss_pred hhCCCCccEEE-EccCChhHHHHHHHHcccCCcEEEEEcc
Q 024295 151 ITHGMGVDYCF-ECTGVPSLLSEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 151 ~~~~~~~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 189 (269)
...+..||.+| |--..-..++.+.+.|++| |.++.+..
T Consensus 158 ~~~~~~vDav~LDmp~PW~~le~~~~~Lkpg-g~~~~y~P 196 (256)
T COG2519 158 GIDEEDVDAVFLDLPDPWNVLEHVSDALKPG-GVVVVYSP 196 (256)
T ss_pred cccccccCEEEEcCCChHHHHHHHHHHhCCC-cEEEEEcC
Confidence 22233899876 4433344688999999997 99998853
No 183
>PRK05993 short chain dehydrogenase; Provisional
Probab=97.21 E-value=0.0033 Score=52.09 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=54.5
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee-eCCCCCCCccHHHHHHhh---hCCCCcc
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF-INPDDEPNKSISELVKGI---THGMGVD 158 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~---~~~~~~d 158 (269)
.++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+.+...+ .|..+ ..++.+.+.+. .++ .+|
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d--~~~~~~~~~~~~~~~~g-~id 78 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLEAFQLDYAE--PESIAALVAQVLELSGG-RLD 78 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCceEEEccCCC--HHHHHHHHHHHHHHcCC-Ccc
Confidence 3578999986 9999999998888899 99999999888877766554432 24332 12222223322 223 799
Q ss_pred EEEEccC
Q 024295 159 YCFECTG 165 (269)
Q Consensus 159 ~v~d~~g 165 (269)
+++++.|
T Consensus 79 ~li~~Ag 85 (277)
T PRK05993 79 ALFNNGA 85 (277)
T ss_pred EEEECCC
Confidence 9999876
No 184
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.19 E-value=0.0065 Score=46.81 Aligned_cols=94 Identities=20% Similarity=0.257 Sum_probs=62.0
Q ss_pred EEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295 88 VAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV 166 (269)
Q Consensus 88 vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~ 166 (269)
|+|+|+ |.+|...++.+...|. +|+++.|++++.+. ..+.+.+. .+- .+. +.+.+... ++|.||.++|.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~--~~~~~~~~-~d~---~d~-~~~~~al~--~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED--SPGVEIIQ-GDL---FDP-DSVKAALK--GADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH--CTTEEEEE-SCT---TCH-HHHHHHHT--TSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc--ccccccce-eee---hhh-hhhhhhhh--hcchhhhhhhh
Confidence 689996 9999999999999998 99999999988776 33444332 211 222 22333222 79999999974
Q ss_pred ----hhHHHHHHHHcccC-CcEEEEEccCC
Q 024295 167 ----PSLLSEALETTKVG-KGKVIVIGVGV 191 (269)
Q Consensus 167 ----~~~~~~~~~~l~~~-~G~~v~~g~~~ 191 (269)
......+++.++.. -.+++.++...
T Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 71 PPKDVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp TTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred hcccccccccccccccccccccceeeeccc
Confidence 22345556655542 13777776444
No 185
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.19 E-value=0.0021 Score=50.52 Aligned_cols=99 Identities=21% Similarity=0.310 Sum_probs=62.7
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhhhC
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGITH 153 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~ 153 (269)
......++.+||.+|+|. |..+..+++. |. +|+++|.+++..+.+++. +... ++... .++. +...
T Consensus 24 ~~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~---~d~~----~~~~ 92 (197)
T PRK11207 24 EAVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLERIKAAENLDN-LHTAV---VDLN----NLTF 92 (197)
T ss_pred HhcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEe---cChh----hCCc
Confidence 344556778999999987 8888888875 77 999999998777666542 2221 11111 1111 1111
Q ss_pred CCCccEEEEccC----C----hhHHHHHHHHcccCCcEEEEEc
Q 024295 154 GMGVDYCFECTG----V----PSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 154 ~~~~d~v~d~~g----~----~~~~~~~~~~l~~~~G~~v~~g 188 (269)
...||+|+.... . ...+..+.+.+++| |.++.+.
T Consensus 93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~~~~~~ 134 (197)
T PRK11207 93 DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG-GYNLIVA 134 (197)
T ss_pred CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence 226999986532 1 23577888899997 9965543
No 186
>PRK08177 short chain dehydrogenase; Provisional
Probab=97.17 E-value=0.0033 Score=50.33 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=51.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee--eCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295 86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF--INPDDEPNKSISELVKGITHGMGVDYCFE 162 (269)
Q Consensus 86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~i~~~~~~~~~d~v~d 162 (269)
++++|+|+ |.+|...+..+...|+ +|+++++++++.+.+++++.... .|-.+ .+...+.+..+.. .++|+++.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~-~~id~vi~ 77 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQALPGVHIEKLDMND--PASLDQLLQRLQG-QRFDLLFV 77 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhccccceEEcCCCC--HHHHHHHHHHhhc-CCCCEEEE
Confidence 46899986 9999998888888899 99999998877766655542222 23322 1223333333333 37999998
Q ss_pred ccCC
Q 024295 163 CTGV 166 (269)
Q Consensus 163 ~~g~ 166 (269)
++|.
T Consensus 78 ~ag~ 81 (225)
T PRK08177 78 NAGI 81 (225)
T ss_pred cCcc
Confidence 8753
No 187
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.17 E-value=0.004 Score=50.27 Aligned_cols=105 Identities=19% Similarity=0.183 Sum_probs=69.5
Q ss_pred HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhh
Q 024295 77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGI 151 (269)
Q Consensus 77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~ 151 (269)
....+..+.++||-+|+|. |..++.+++.++ ..+|++++.+++..+.+++ .|...-+.... .+..+.+.++
T Consensus 61 ~~l~~~~~~~~vLEiGt~~-G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~---gda~~~L~~l 136 (234)
T PLN02781 61 SMLVKIMNAKNTLEIGVFT-GYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ---SDALSALDQL 136 (234)
T ss_pred HHHHHHhCCCEEEEecCcc-cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---ccHHHHHHHH
Confidence 3456667789999999865 888888888764 3499999999988887765 34332222222 4444444444
Q ss_pred hC---CCCccEEEEccC---ChhHHHHHHHHcccCCcEEEE
Q 024295 152 TH---GMGVDYCFECTG---VPSLLSEALETTKVGKGKVIV 186 (269)
Q Consensus 152 ~~---~~~~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~ 186 (269)
.. ...||+||--.. ....+..+++.+++| |.++.
T Consensus 137 ~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~G-G~ii~ 176 (234)
T PLN02781 137 LNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVG-GIIAF 176 (234)
T ss_pred HhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-eEEEE
Confidence 21 238999974332 234578889999996 88765
No 188
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.16 E-value=0.0072 Score=45.39 Aligned_cols=102 Identities=25% Similarity=0.323 Sum_probs=64.2
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295 82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
.-.|++++|.|-|-+|...++.++.+|+ +|++++.++-+.-.+..-|.. + ....+.+ ...|+++
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~-v--------~~~~~a~------~~adi~v 83 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFE-V--------MTLEEAL------RDADIFV 83 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-E-E--------E-HHHHT------TT-SEEE
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcE-e--------cCHHHHH------hhCCEEE
Confidence 4478999999999999999999999999 999999988766666555543 2 1222222 1679999
Q ss_pred EccCChhH-HHHHHHHcccCCcEEEEEccCCCccccchhHhhh
Q 024295 162 ECTGVPSL-LSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA 203 (269)
Q Consensus 162 d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~ 203 (269)
-++|.... -.+-+..++.+ .-+...|.. +.+++...+.
T Consensus 84 taTG~~~vi~~e~~~~mkdg-ail~n~Gh~---d~Eid~~~L~ 122 (162)
T PF00670_consen 84 TATGNKDVITGEHFRQMKDG-AILANAGHF---DVEIDVDALE 122 (162)
T ss_dssp E-SSSSSSB-HHHHHHS-TT-EEEEESSSS---TTSBTHHHHH
T ss_pred ECCCCccccCHHHHHHhcCC-eEEeccCcC---ceeEeecccc
Confidence 99997643 35778889985 555555543 3455554443
No 189
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.14 E-value=0.0039 Score=54.58 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=62.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
-.+.++||+|+|.+|.+++..+...|+++++++.|+.++.+.+. +++...++.. +.+.+... .+|+||
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~---------~~l~~~l~--~aDiVI 247 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYL---------SELPQLIK--KADIII 247 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecH---------HHHHHHhc--cCCEEE
Confidence 36789999999999999999999999878999999987766554 4542222221 12222211 689999
Q ss_pred EccCChhHHHHHHHHcccCCcEEEEEccCCC
Q 024295 162 ECTGVPSLLSEALETTKVGKGKVIVIGVGVD 192 (269)
Q Consensus 162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~ 192 (269)
.|++.+..+-. .+.++...=.++.++.|..
T Consensus 248 ~aT~a~~~vi~-~~~~~~~~~~~iDLavPRd 277 (414)
T PRK13940 248 AAVNVLEYIVT-CKYVGDKPRVFIDISIPQA 277 (414)
T ss_pred ECcCCCCeeEC-HHHhCCCCeEEEEeCCCCC
Confidence 99988643211 1122221024566666553
No 190
>PRK05693 short chain dehydrogenase; Provisional
Probab=97.14 E-value=0.004 Score=51.43 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=53.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee-eCCCCCCCccHHHHHHhhh-CCCCccEEEE
Q 024295 86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF-INPDDEPNKSISELVKGIT-HGMGVDYCFE 162 (269)
Q Consensus 86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~-~~~~~d~v~d 162 (269)
+++||+|+ |.+|...++.+...|+ +|+++++++++.+.+...+...+ .|..+ +..+.+.+.... ...++|++++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~id~vi~ 78 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFTAVQLDVND--GAALARLAEELEAEHGGLDVLIN 78 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeEEEeeCCC--HHHHHHHHHHHHHhcCCCCEEEE
Confidence 47899986 8999999999888899 99999998877776665554332 34433 123333333321 1237999999
Q ss_pred ccCC
Q 024295 163 CTGV 166 (269)
Q Consensus 163 ~~g~ 166 (269)
+.|.
T Consensus 79 ~ag~ 82 (274)
T PRK05693 79 NAGY 82 (274)
T ss_pred CCCC
Confidence 9973
No 191
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.11 E-value=0.0056 Score=49.71 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=69.9
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhh
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGIT 152 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~ 152 (269)
...+..+.++||-+|.+ +|..++.+++.++. .+++.++.+++..+.+++ .|..+-+.... .+..+.+.++.
T Consensus 73 ~l~~~~~ak~iLEiGT~-~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~---G~a~e~L~~l~ 148 (247)
T PLN02589 73 MLLKLINAKNTMEIGVY-TGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE---GPALPVLDQMI 148 (247)
T ss_pred HHHHHhCCCEEEEEeCh-hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe---ccHHHHHHHHH
Confidence 34455567899999975 48888999987642 289999999988887755 45333333333 55555565543
Q ss_pred C----CCCccEEE-Ecc--CChhHHHHHHHHcccCCcEEEE
Q 024295 153 H----GMGVDYCF-ECT--GVPSLLSEALETTKVGKGKVIV 186 (269)
Q Consensus 153 ~----~~~~d~v~-d~~--g~~~~~~~~~~~l~~~~G~~v~ 186 (269)
+ ...||.|| |+- .....++.+++++++| |.++.
T Consensus 149 ~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~G-Gviv~ 188 (247)
T PLN02589 149 EDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVG-GVIGY 188 (247)
T ss_pred hccccCCcccEEEecCCHHHhHHHHHHHHHhcCCC-eEEEE
Confidence 2 13899997 443 2233578889999996 77654
No 192
>PLN02476 O-methyltransferase
Probab=97.08 E-value=0.0074 Score=49.76 Aligned_cols=105 Identities=16% Similarity=0.241 Sum_probs=70.5
Q ss_pred HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhh
Q 024295 77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGI 151 (269)
Q Consensus 77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~ 151 (269)
....+..+.++||-+|++. |..++.+++.++. .+|+.++.+++..+.+++ .|..+-+.... .+..+.+.++
T Consensus 111 ~~L~~~~~ak~VLEIGT~t-GySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~---GdA~e~L~~l 186 (278)
T PLN02476 111 AMLVQILGAERCIEVGVYT-GYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKH---GLAAESLKSM 186 (278)
T ss_pred HHHHHhcCCCeEEEecCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHH
Confidence 3456667789999999854 8888888887642 279999999988887755 45443333332 4444555443
Q ss_pred h---CCCCccEEEEccCC---hhHHHHHHHHcccCCcEEEE
Q 024295 152 T---HGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIV 186 (269)
Q Consensus 152 ~---~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~ 186 (269)
. ....||.||--... ...++.+++.+++| |.++.
T Consensus 187 ~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~G-GvIV~ 226 (278)
T PLN02476 187 IQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVG-GVIVM 226 (278)
T ss_pred HhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-cEEEE
Confidence 2 12379998743332 34578899999996 88765
No 193
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.06 E-value=0.0036 Score=49.71 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=67.8
Q ss_pred cccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCC
Q 024295 63 SFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDD 138 (269)
Q Consensus 63 a~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~ 138 (269)
..+..+...++ +....+++++.+||-+|+|. |..+..+++.. . +|++++.+++..+.+++ .+...+ +...
T Consensus 59 ~~~~~p~~~~~--l~~~l~~~~~~~VLeiG~Gs-G~~t~~la~~~-~-~v~~vd~~~~~~~~a~~~~~~~~~~~v-~~~~ 132 (212)
T PRK00312 59 QTISQPYMVAR--MTELLELKPGDRVLEIGTGS-GYQAAVLAHLV-R-RVFSVERIKTLQWEAKRRLKQLGLHNV-SVRH 132 (212)
T ss_pred CeeCcHHHHHH--HHHhcCCCCCCEEEEECCCc-cHHHHHHHHHh-C-EEEEEeCCHHHHHHHHHHHHHCCCCce-EEEE
Confidence 33333444443 34567888999999999876 66666666654 3 89999998877666644 343221 1111
Q ss_pred CCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295 139 EPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 139 ~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 187 (269)
.+..+ .+.....||+|+-..........+.+.+++| |+++..
T Consensus 133 ---~d~~~---~~~~~~~fD~I~~~~~~~~~~~~l~~~L~~g-G~lv~~ 174 (212)
T PRK00312 133 ---GDGWK---GWPAYAPFDRILVTAAAPEIPRALLEQLKEG-GILVAP 174 (212)
T ss_pred ---CCccc---CCCcCCCcCEEEEccCchhhhHHHHHhcCCC-cEEEEE
Confidence 11111 1111237998876544444567788999996 988764
No 194
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.06 E-value=0.0098 Score=45.33 Aligned_cols=98 Identities=21% Similarity=0.241 Sum_probs=63.4
Q ss_pred ccccccchhhhHHHHHHhcCCCCCCeEEEEcCCh-hHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC
Q 024295 62 ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGT-VGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP 140 (269)
Q Consensus 62 aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~-~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~ 140 (269)
....|+....+...+.....--.+++|||+|+|- +|..++..++..|+ +|+.+.++.
T Consensus 21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~--------------------- 78 (168)
T cd01080 21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT--------------------- 78 (168)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc---------------------
Confidence 3445554444444333333345789999999986 59989999998999 788887642
Q ss_pred CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295 141 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 141 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
++..+.+. .+|+||.+++.+..+. .+.++++ -.++.++.+.
T Consensus 79 -~~l~~~l~------~aDiVIsat~~~~ii~--~~~~~~~-~viIDla~pr 119 (168)
T cd01080 79 -KNLKEHTK------QADIVIVAVGKPGLVK--GDMVKPG-AVVIDVGINR 119 (168)
T ss_pred -hhHHHHHh------hCCEEEEcCCCCceec--HHHccCC-eEEEEccCCC
Confidence 12222222 6899999998864322 2346664 6777777654
No 195
>PRK12742 oxidoreductase; Provisional
Probab=97.05 E-value=0.017 Score=46.36 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=48.4
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcC-CcchHHHH-HhCCCcee-eCCCCCCCccHHHHHHhhhCCCCccE
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDK-NPWKKEKG-KAFGMTDF-INPDDEPNKSISELVKGITHGMGVDY 159 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~-~~~~~~~~-~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~ 159 (269)
+++++||+|+ |.+|.+.++.+...|+ +|+.+.+ ++++.+.+ .+.+...+ .|..+ ...+.+.+.+ . + ++|+
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~--~~~~~~~~~~-~-~-~id~ 78 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGATAVQTDSAD--RDAVIDVVRK-S-G-ALDI 78 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCeEEecCCCC--HHHHHHHHHH-h-C-CCcE
Confidence 4689999986 8999999999988999 7777654 44444433 34554432 23222 1223233322 1 2 6999
Q ss_pred EEEccCC
Q 024295 160 CFECTGV 166 (269)
Q Consensus 160 v~d~~g~ 166 (269)
+++++|.
T Consensus 79 li~~ag~ 85 (237)
T PRK12742 79 LVVNAGI 85 (237)
T ss_pred EEECCCC
Confidence 9999864
No 196
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.03 E-value=0.0049 Score=55.45 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295 82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
+.++++|+|+|.|.+|++++.+++..|+ +|++.|.++++.+.+++.|...+ ... ...+.+ ..+|+|+
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~~~-~~~-----~~~~~l------~~~D~VV 75 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVATV-STS-----DAVQQI------ADYALVV 75 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCEEE-cCc-----chHhHh------hcCCEEE
Confidence 5578999999999999999999999999 99999977666666777777433 221 111222 1579999
Q ss_pred EccCChh
Q 024295 162 ECTGVPS 168 (269)
Q Consensus 162 d~~g~~~ 168 (269)
.+.|-+.
T Consensus 76 ~SpGi~~ 82 (488)
T PRK03369 76 TSPGFRP 82 (488)
T ss_pred ECCCCCC
Confidence 9887653
No 197
>PRK06182 short chain dehydrogenase; Validated
Probab=97.02 E-value=0.0044 Score=51.17 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=54.3
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce-eeCCCCCCCccHHHHHHhhhC-CCCccEE
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD-FINPDDEPNKSISELVKGITH-GMGVDYC 160 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~v 160 (269)
++++++|+|+ |.+|...++.+...|+ +|+++++++++.+.+.+.+... ..|-.+ .+++.+.+.+... ..++|++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~~~id~l 78 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGVHPLSLDVTD--EASIKAAVDTIIAEEGRIDVL 78 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCeEEEeeCCC--HHHHHHHHHHHHHhcCCCCEE
Confidence 3578999986 8999999999888899 9999999888776665544432 223332 2333333333211 1279999
Q ss_pred EEccCC
Q 024295 161 FECTGV 166 (269)
Q Consensus 161 ~d~~g~ 166 (269)
+++.|.
T Consensus 79 i~~ag~ 84 (273)
T PRK06182 79 VNNAGY 84 (273)
T ss_pred EECCCc
Confidence 999874
No 198
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.00 E-value=0.0082 Score=49.97 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=37.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK 126 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~ 126 (269)
++++|+|+|+|+.|.+++..+...|+++|+.++|+.+|.+.+.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la 168 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA 168 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 5689999999999999999999999989999999988777653
No 199
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.99 E-value=0.023 Score=45.63 Aligned_cols=94 Identities=16% Similarity=0.201 Sum_probs=61.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHcCCC--eEEEEcCC----cchH--------HHHHhCCCceeeCCCCCCCccHHHHH
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMHGAA--KIIGIDKN----PWKK--------EKGKAFGMTDFINPDDEPNKSISELV 148 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~--~v~~~~~~----~~~~--------~~~~~~g~~~v~~~~~~~~~~~~~~i 148 (269)
-++++++|+|+|..|.+++..+...|.+ +++.++++ .++. +++++++... .+ .++.+.+
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~----~~---~~l~~~l 95 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK----TG---GTLKEAL 95 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc----cc---CCHHHHH
Confidence 3578999999999999999888889998 89999988 4442 2334433211 11 2333333
Q ss_pred HhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccC
Q 024295 149 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG 190 (269)
Q Consensus 149 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 190 (269)
. ++|+++++++........++.++++ ..++.+..+
T Consensus 96 ~------~~dvlIgaT~~G~~~~~~l~~m~~~-~ivf~lsnP 130 (226)
T cd05311 96 K------GADVFIGVSRPGVVKKEMIKKMAKD-PIVFALANP 130 (226)
T ss_pred h------cCCEEEeCCCCCCCCHHHHHhhCCC-CEEEEeCCC
Confidence 2 5899999996322224667777774 655555433
No 200
>PRK07060 short chain dehydrogenase; Provisional
Probab=96.96 E-value=0.0064 Score=49.11 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=52.5
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCcee-eCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDF-INPDDEPNKSISELVKGITHGMGVDYC 160 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v 160 (269)
++++++|+|+ |.+|...++.+...|+ +|+++++++++.+.+.+ .+...+ .|..+ ....+...+. ..++|++
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~--~~~~d~v 81 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCEPLRLDVGD---DAAIRAALAA--AGAFDGL 81 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeEEEecCCC---HHHHHHHHHH--hCCCCEE
Confidence 4678999986 8999999999999999 89999998877665543 444322 23332 3222222222 2278999
Q ss_pred EEccCC
Q 024295 161 FECTGV 166 (269)
Q Consensus 161 ~d~~g~ 166 (269)
|+++|.
T Consensus 82 i~~ag~ 87 (245)
T PRK07060 82 VNCAGI 87 (245)
T ss_pred EECCCC
Confidence 998874
No 201
>PRK08017 oxidoreductase; Provisional
Probab=96.94 E-value=0.0037 Score=50.90 Aligned_cols=77 Identities=22% Similarity=0.348 Sum_probs=53.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHH---HHHhhhCCCCccEE
Q 024295 86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISE---LVKGITHGMGVDYC 160 (269)
Q Consensus 86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~---~i~~~~~~~~~d~v 160 (269)
+++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+++.+...+. |..+ .....+ .+....++ .+|.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~~-~~~~i 78 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGILLDLDD--PESVERAADEVIALTDN-RLYGL 78 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEEEeecCC--HHHHHHHHHHHHHhcCC-CCeEE
Confidence 57999997 9999999999998899 899999998888877777654332 3322 122222 22222223 78888
Q ss_pred EEccCC
Q 024295 161 FECTGV 166 (269)
Q Consensus 161 ~d~~g~ 166 (269)
+.+.|.
T Consensus 79 i~~ag~ 84 (256)
T PRK08017 79 FNNAGF 84 (256)
T ss_pred EECCCC
Confidence 888763
No 202
>PRK00811 spermidine synthase; Provisional
Probab=96.93 E-value=0.0058 Score=50.85 Aligned_cols=99 Identities=12% Similarity=0.054 Sum_probs=63.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-C-----C--ceeeCCCCCCCccHHHHHHhhhCC
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-G-----M--TDFINPDDEPNKSISELVKGITHG 154 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g-----~--~~v~~~~~~~~~~~~~~i~~~~~~ 154 (269)
...++||++|+|. |..+..+++..+.++|++++.+++-.+.++++ . . +.-+.... .+..+.+.+ .+
T Consensus 75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~---~Da~~~l~~-~~- 148 (283)
T PRK00811 75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI---GDGIKFVAE-TE- 148 (283)
T ss_pred CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE---CchHHHHhh-CC-
Confidence 3568999999876 77788888876777999999999888888763 1 1 10000011 333333433 23
Q ss_pred CCccEEEEccCC----------hhHHHHHHHHcccCCcEEEEEc
Q 024295 155 MGVDYCFECTGV----------PSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 155 ~~~d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g 188 (269)
..+|+|+--... ...++.+.+.|+++ |.++...
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~g-Gvlv~~~ 191 (283)
T PRK00811 149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKED-GIFVAQS 191 (283)
T ss_pred CcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEEeC
Confidence 389998743211 12356788899996 9988753
No 203
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.93 E-value=0.013 Score=48.04 Aligned_cols=99 Identities=21% Similarity=0.223 Sum_probs=66.9
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC-ceeeCCCCCCCccHHHHHHhhhCCCC
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM-TDFINPDDEPNKSISELVKGITHGMG 156 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~ 156 (269)
....+.++++||-+|+|. |..+..+++..+..+|++++.+++..+.+++.-. ..++.. +.. ++.....
T Consensus 25 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~------d~~----~~~~~~~ 93 (258)
T PRK01683 25 ARVPLENPRYVVDLGCGP-GNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA------DIA----SWQPPQA 93 (258)
T ss_pred hhCCCcCCCEEEEEcccC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC------chh----ccCCCCC
Confidence 445667889999999886 7888888887754499999999988888776422 122211 111 1122238
Q ss_pred ccEEEEccC------ChhHHHHHHHHcccCCcEEEEEc
Q 024295 157 VDYCFECTG------VPSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 157 ~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g 188 (269)
+|+|+-... ....+..+.+.|++| |.++...
T Consensus 94 fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~~~~~~ 130 (258)
T PRK01683 94 LDLIFANASLQWLPDHLELFPRLVSLLAPG-GVLAVQM 130 (258)
T ss_pred ccEEEEccChhhCCCHHHHHHHHHHhcCCC-cEEEEEC
Confidence 999874332 133578889999996 9987753
No 204
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.92 E-value=0.016 Score=52.52 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=39.2
Q ss_pred HhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 024295 78 KEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG 125 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~ 125 (269)
...+.+.++++||+|+ |.+|..+++.+...|+ +|++++|+.++.+.+
T Consensus 73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l 120 (576)
T PLN03209 73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESL 120 (576)
T ss_pred cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 3456678899999986 9999999998888899 999999988776543
No 205
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.92 E-value=0.0047 Score=52.64 Aligned_cols=80 Identities=18% Similarity=0.300 Sum_probs=52.5
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce-e--eCCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD-F--INPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~ 154 (269)
+++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+ ++.|.+. + .|-.+ .++..+.+.+... .
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d--~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTD--ADQVKALATQAASFG 82 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHhc
Confidence 4689999986 8999999999999999 899999988776543 3345432 1 23322 1222222222211 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|++++++|.
T Consensus 83 g~iD~lVnnAG~ 94 (330)
T PRK06139 83 GRIDVWVNNVGV 94 (330)
T ss_pred CCCCEEEECCCc
Confidence 279999999873
No 206
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0044 Score=51.23 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=39.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA 127 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~ 127 (269)
++++++|+|+|+.+.+++..++..|+++++++.|+.+|.+.+.+
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~ 168 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD 168 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 47899999999999999999999998899999999988777654
No 207
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=96.88 E-value=0.0088 Score=46.79 Aligned_cols=95 Identities=23% Similarity=0.207 Sum_probs=71.9
Q ss_pred cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295 80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 159 (269)
Q Consensus 80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~ 159 (269)
..+.+-..|.-+|+|+ |...-.+++......|.++|.+++..+.+++...+.-+.. ..++++.+....|+
T Consensus 26 Vp~~~~~~v~DLGCGp-GnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~---------aDl~~w~p~~~~dl 95 (257)
T COG4106 26 VPLERPRRVVDLGCGP-GNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEE---------ADLRTWKPEQPTDL 95 (257)
T ss_pred CCccccceeeecCCCC-CHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceec---------ccHhhcCCCCccch
Confidence 3444567788889998 9999999998865599999999999999988665432222 23677888778999
Q ss_pred EEEcc------CChhHHHHHHHHcccCCcEEE
Q 024295 160 CFECT------GVPSLLSEALETTKVGKGKVI 185 (269)
Q Consensus 160 v~d~~------g~~~~~~~~~~~l~~~~G~~v 185 (269)
+|-.. ..+..+.+.+..+++| |.+.
T Consensus 96 lfaNAvlqWlpdH~~ll~rL~~~L~Pg-g~LA 126 (257)
T COG4106 96 LFANAVLQWLPDHPELLPRLVSQLAPG-GVLA 126 (257)
T ss_pred hhhhhhhhhccccHHHHHHHHHhhCCC-ceEE
Confidence 98544 2455788999999996 8764
No 208
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.87 E-value=0.021 Score=47.03 Aligned_cols=106 Identities=22% Similarity=0.322 Sum_probs=66.5
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce---ee--CCCCCCCccHHHHHHhhh-
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD---FI--NPDDEPNKSISELVKGIT- 152 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---v~--~~~~~~~~~~~~~i~~~~- 152 (269)
.++.|+|+|+ +++|.+.+.-....|+ +++.+.+..++++.+ ++.++.. ++ |-.+ .++..+.+.+..
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~--~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSD--EESVKKFVEWAIR 87 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCC--HHHHHHHHHHHHH
Confidence 4788999997 7999887777777799 777777777777766 3333222 11 2121 233333332221
Q ss_pred CCCCccEEEEccCCh-------------------------hHHHHHHHHcccCC-cEEEEEccCCC
Q 024295 153 HGMGVDYCFECTGVP-------------------------SLLSEALETTKVGK-GKVIVIGVGVD 192 (269)
Q Consensus 153 ~~~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~-G~~v~~g~~~~ 192 (269)
.-.++|+.++..|-. ...+.++..+++.+ |++|.+++..+
T Consensus 88 ~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG 153 (282)
T KOG1205|consen 88 HFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAG 153 (282)
T ss_pred hcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccc
Confidence 123899999988741 12455666666533 99999987766
No 209
>PRK07326 short chain dehydrogenase; Provisional
Probab=96.87 E-value=0.018 Score=46.24 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=50.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCC---Cceee--CCCCCCCccHHHHHHhhhCC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFG---MTDFI--NPDDEPNKSISELVKGITHG-M 155 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g---~~~v~--~~~~~~~~~~~~~i~~~~~~-~ 155 (269)
++.+++|+|+ |.+|..+++.+...|+ +|+++++++++.+.+ +++. .-+.+ |..+ ..++.+.+.+.... .
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRD--EADVQRAVDAIVAAFG 81 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCC--HHHHHHHHHHHHHHcC
Confidence 4688999986 8999999888888899 899999987665544 2232 11122 2222 23333334333211 2
Q ss_pred CccEEEEccCC
Q 024295 156 GVDYCFECTGV 166 (269)
Q Consensus 156 ~~d~v~d~~g~ 166 (269)
++|++|++.|.
T Consensus 82 ~~d~vi~~ag~ 92 (237)
T PRK07326 82 GLDVLIANAGV 92 (237)
T ss_pred CCCEEEECCCC
Confidence 79999998764
No 210
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.86 E-value=0.01 Score=46.84 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=31.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
.+.+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46789999999999999999999999899999866
No 211
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=96.84 E-value=0.021 Score=46.70 Aligned_cols=97 Identities=20% Similarity=0.168 Sum_probs=67.7
Q ss_pred HHhcCCCCCCeEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCC
Q 024295 77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGM 155 (269)
Q Consensus 77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~ 155 (269)
.......++.+||-+|+|. |..+..+++.. +. +|++++.+++..+.+++.+.+.+. .+.. ++....
T Consensus 22 l~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~~~~~~~~-------~d~~----~~~~~~ 88 (255)
T PRK14103 22 LARVGAERARRVVDLGCGP-GNLTRYLARRWPGA-VIEALDSSPEMVAAARERGVDART-------GDVR----DWKPKP 88 (255)
T ss_pred HHhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHhcCCcEEE-------cChh----hCCCCC
Confidence 3455667889999999986 77888888875 45 899999999888888876544332 2221 121223
Q ss_pred CccEEEEccC-----C-hhHHHHHHHHcccCCcEEEEE
Q 024295 156 GVDYCFECTG-----V-PSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 156 ~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~ 187 (269)
.||+|+-... . ...+..+.+.|++| |+++..
T Consensus 89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~~~ 125 (255)
T PRK14103 89 DTDVVVSNAALQWVPEHADLLVRWVDELAPG-SWIAVQ 125 (255)
T ss_pred CceEEEEehhhhhCCCHHHHHHHHHHhCCCC-cEEEEE
Confidence 7999975331 1 33577888999997 998764
No 212
>PRK04266 fibrillarin; Provisional
Probab=96.83 E-value=0.026 Score=45.32 Aligned_cols=102 Identities=19% Similarity=0.172 Sum_probs=63.3
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhC
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITH 153 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~ 153 (269)
+...++++++||-+|+|+ |..+..+++..+..+|++++.+++..+.+.+ ...-..+..+. .+. .....+ .
T Consensus 66 ~~l~i~~g~~VlD~G~G~-G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~---~~~-~~~~~l-~ 139 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAAS-GTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADA---RKP-ERYAHV-V 139 (226)
T ss_pred hhCCCCCCCEEEEEccCC-CHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCC---CCc-chhhhc-c
Confidence 357889999999999876 6677777777653389999999876664433 21112221111 110 000111 1
Q ss_pred CCCccEEEEccCChh----HHHHHHHHcccCCcEEEEE
Q 024295 154 GMGVDYCFECTGVPS----LLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 154 ~~~~d~v~d~~g~~~----~~~~~~~~l~~~~G~~v~~ 187 (269)
+ .+|+++-....+. .+..+.+.|++| |+++..
T Consensus 140 ~-~~D~i~~d~~~p~~~~~~L~~~~r~LKpG-G~lvI~ 175 (226)
T PRK04266 140 E-KVDVIYQDVAQPNQAEIAIDNAEFFLKDG-GYLLLA 175 (226)
T ss_pred c-cCCEEEECCCChhHHHHHHHHHHHhcCCC-cEEEEE
Confidence 2 6999985443321 267888899997 998874
No 213
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.82 E-value=0.033 Score=43.80 Aligned_cols=110 Identities=24% Similarity=0.272 Sum_probs=68.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE 162 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d 162 (269)
++.+++|.|.|.+|..+++.+...|+ +|++.++++++.+.+++ +++. .++..+ +. . ..+|+++.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~---------l~---~-~~~Dv~vp 91 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT-VVAPEE---------IY---S-VDADVFAP 91 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE-EEcchh---------hc---c-ccCCEEEe
Confidence 57899999999999999999999999 99999998887776654 4644 232211 11 1 16899997
Q ss_pred ccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEe
Q 024295 163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKG 211 (269)
Q Consensus 163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~ 211 (269)
|......-...++.++.. .++.-+..+-.. +-....+..+++.+.+
T Consensus 92 ~A~~~~I~~~~~~~l~~~--~v~~~AN~~~~~-~~~~~~L~~~Gi~~~P 137 (200)
T cd01075 92 CALGGVINDDTIPQLKAK--AIAGAANNQLAD-PRHGQMLHERGILYAP 137 (200)
T ss_pred cccccccCHHHHHHcCCC--EEEECCcCccCC-HhHHHHHHHCCCEEeC
Confidence 764433344555666542 333322221111 1222334457777766
No 214
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.82 E-value=0.0073 Score=54.05 Aligned_cols=77 Identities=26% Similarity=0.405 Sum_probs=54.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc---------------------chHHHHHhCCCceeeCCCCCCCc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP---------------------WKKEKGKAFGMTDFINPDDEPNK 142 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~---------------------~~~~~~~~~g~~~v~~~~~~~~~ 142 (269)
.+++|+|+|+|+.|+.++..++..|. +|+.+++.+ ...+.++++|.+..++..- ..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v--~~ 216 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEV--GR 216 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEe--CC
Confidence 46899999999999999999999999 888887654 2345677888776655432 01
Q ss_pred cHHHHHHhhhCCCCccEEEEccCCh
Q 024295 143 SISELVKGITHGMGVDYCFECTGVP 167 (269)
Q Consensus 143 ~~~~~i~~~~~~~~~d~v~d~~g~~ 167 (269)
++ .+.+.. .++|.||.++|..
T Consensus 217 ~~--~~~~~~--~~~D~vilAtGa~ 237 (467)
T TIGR01318 217 DI--SLDDLL--EDYDAVFLGVGTY 237 (467)
T ss_pred cc--CHHHHH--hcCCEEEEEeCCC
Confidence 11 111111 2799999999875
No 215
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=96.81 E-value=0.0057 Score=49.56 Aligned_cols=108 Identities=19% Similarity=0.229 Sum_probs=67.2
Q ss_pred HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHH-HHHH
Q 024295 76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSIS-ELVK 149 (269)
Q Consensus 76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~-~~i~ 149 (269)
+.....+.||++|+--|.|+ |.++..+++..|.. +|+..+.++++.+.+++ .|....+.-.. .|.. +...
T Consensus 32 I~~~l~i~pG~~VlEaGtGS-G~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~---~Dv~~~g~~ 107 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGS-GSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHH---RDVCEEGFD 107 (247)
T ss_dssp HHHHTT--TT-EEEEE--TT-SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEE---S-GGCG--S
T ss_pred HHHHcCCCCCCEEEEecCCc-HHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEe---cceeccccc
Confidence 45678999999999999876 88888999988743 99999999988887754 45432111110 1111 1111
Q ss_pred hhhCCCCccEEEEccCCh-hHHHHHHHHc-ccCCcEEEEEcc
Q 024295 150 GITHGMGVDYCFECTGVP-SLLSEALETT-KVGKGKVIVIGV 189 (269)
Q Consensus 150 ~~~~~~~~d~v~d~~g~~-~~~~~~~~~l-~~~~G~~v~~g~ 189 (269)
+-. ...+|.||=-...| ..+..+.+.| ++| |+++.+..
T Consensus 108 ~~~-~~~~DavfLDlp~Pw~~i~~~~~~L~~~g-G~i~~fsP 147 (247)
T PF08704_consen 108 EEL-ESDFDAVFLDLPDPWEAIPHAKRALKKPG-GRICCFSP 147 (247)
T ss_dssp TT--TTSEEEEEEESSSGGGGHHHHHHHE-EEE-EEEEEEES
T ss_pred ccc-cCcccEEEEeCCCHHHHHHHHHHHHhcCC-ceEEEECC
Confidence 101 13789886444443 3688999999 896 99999853
No 216
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.79 E-value=0.013 Score=49.42 Aligned_cols=91 Identities=26% Similarity=0.451 Sum_probs=61.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295 86 SSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT 164 (269)
Q Consensus 86 ~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~ 164 (269)
.+|.|+|+|.+|...+..++..|. .+|+++++++++.+.+++.|...... .+..+.+ ...|+|+.|+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~------~~~~~~~------~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVT------TSAAEAV------KGADLVILCV 74 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceec------CCHHHHh------cCCCEEEECC
Confidence 579999999999999888888774 38999999998888888877422111 1121222 1689999999
Q ss_pred CChhH---HHHHHHHcccCCcEEEEEcc
Q 024295 165 GVPSL---LSEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 165 g~~~~---~~~~~~~l~~~~G~~v~~g~ 189 (269)
..... +..+...++++ ..++.+|.
T Consensus 75 p~~~~~~v~~~l~~~l~~~-~iv~dvgs 101 (307)
T PRK07502 75 PVGASGAVAAEIAPHLKPG-AIVTDVGS 101 (307)
T ss_pred CHHHHHHHHHHHHhhCCCC-CEEEeCcc
Confidence 75422 33333455664 66666654
No 217
>PLN03075 nicotianamine synthase; Provisional
Probab=96.79 E-value=0.013 Score=48.73 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=64.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhCC-C----ceeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAFG-M----TDFINPDDEPNKSISELVKGITHGMGV 157 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~g-~----~~v~~~~~~~~~~~~~~i~~~~~~~~~ 157 (269)
+.++|+-+|+|+.++.++.+++.+.. .+++++|.+++..+.+++.- . ..-+.... .+..+. .....+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~---~Da~~~---~~~l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHT---ADVMDV---TESLKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEE---Cchhhc---ccccCCc
Confidence 67999999999999999888876543 38999999998888887632 1 11111111 222211 1112389
Q ss_pred cEEEEcc-------CChhHHHHHHHHcccCCcEEEEE
Q 024295 158 DYCFECT-------GVPSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 158 d~v~d~~-------g~~~~~~~~~~~l~~~~G~~v~~ 187 (269)
|+||-.+ .....++.+.+.+++| |.++.=
T Consensus 197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPG-G~Lvlr 232 (296)
T PLN03075 197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPG-ALLMLR 232 (296)
T ss_pred CEEEEecccccccccHHHHHHHHHHhcCCC-cEEEEe
Confidence 9998654 1233578899999996 887654
No 218
>PRK04457 spermidine synthase; Provisional
Probab=96.79 E-value=0.02 Score=47.10 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=65.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CC----c--eeeCCCCCCCccHHHHHHhhhCCC
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GM----T--DFINPDDEPNKSISELVKGITHGM 155 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~----~--~v~~~~~~~~~~~~~~i~~~~~~~ 155 (269)
.+.++||++|+|+ |..+..+++.....++++++.+++-.+.+++. +. . .++. .+..+.+.+. + .
T Consensus 65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~------~Da~~~l~~~-~-~ 135 (262)
T PRK04457 65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIE------ADGAEYIAVH-R-H 135 (262)
T ss_pred CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE------CCHHHHHHhC-C-C
Confidence 3567899999886 88888888877544999999999999888873 31 1 1221 3444444432 2 3
Q ss_pred CccEEE-EccCC---------hhHHHHHHHHcccCCcEEEE
Q 024295 156 GVDYCF-ECTGV---------PSLLSEALETTKVGKGKVIV 186 (269)
Q Consensus 156 ~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~ 186 (269)
.+|+|+ |+... ...++.+.+.|+++ |.++.
T Consensus 136 ~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pg-Gvlvi 175 (262)
T PRK04457 136 STDVILVDGFDGEGIIDALCTQPFFDDCRNALSSD-GIFVV 175 (262)
T ss_pred CCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCC-cEEEE
Confidence 799886 44321 24678889999996 99876
No 219
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.78 E-value=0.0093 Score=49.53 Aligned_cols=45 Identities=20% Similarity=0.213 Sum_probs=38.4
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA 127 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~ 127 (269)
..+++++|+|+|++|.+++..+...|+.+|+++.|+.++.+.+.+
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~ 165 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAK 165 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 356889999999999999999999996699999999887766543
No 220
>PRK06057 short chain dehydrogenase; Provisional
Probab=96.78 E-value=0.0079 Score=49.06 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=52.1
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCce-eeCCCCCCCccHHHHHHhhhC-CCCccE
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTD-FINPDDEPNKSISELVKGITH-GMGVDY 159 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~ 159 (269)
+++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.. .+++... ..|..+ +..+.+.+.+..+ ..++|+
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~ 82 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGGLFVPTDVTD--EDAVNALFDTAAETYGSVDI 82 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcCCcEEEeeCCC--HHHHHHHHHHHHHHcCCCCE
Confidence 5789999986 9999999999998999 999999887765544 3344322 223332 1222222322211 127899
Q ss_pred EEEccCC
Q 024295 160 CFECTGV 166 (269)
Q Consensus 160 v~d~~g~ 166 (269)
++.+.|.
T Consensus 83 vi~~ag~ 89 (255)
T PRK06057 83 AFNNAGI 89 (255)
T ss_pred EEECCCc
Confidence 9998863
No 221
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.77 E-value=0.027 Score=42.73 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=57.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295 86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG 165 (269)
Q Consensus 86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g 165 (269)
.+|-++|.|.+|...+.-+...|+ +|++.++++++.+.+.+.|+... ++..+.+. ..|+||-++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~~~--------~s~~e~~~------~~dvvi~~v~ 66 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAEVA--------DSPAEAAE------QADVVILCVP 66 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEEEE--------SSHHHHHH------HBSEEEE-SS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhhhh--------hhhhhHhh------cccceEeecc
Confidence 368899999999998888888899 99999999999999888774422 22222332 4588888887
Q ss_pred ChhHHHHHHH------HcccCCcEEEEEcc
Q 024295 166 VPSLLSEALE------TTKVGKGKVIVIGV 189 (269)
Q Consensus 166 ~~~~~~~~~~------~l~~~~G~~v~~g~ 189 (269)
........+. .++++ ..++.++.
T Consensus 67 ~~~~v~~v~~~~~i~~~l~~g-~iiid~sT 95 (163)
T PF03446_consen 67 DDDAVEAVLFGENILAGLRPG-KIIIDMST 95 (163)
T ss_dssp SHHHHHHHHHCTTHGGGS-TT-EEEEE-SS
T ss_pred cchhhhhhhhhhHHhhccccc-eEEEecCC
Confidence 7555555443 34453 45555543
No 222
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=96.75 E-value=0.0089 Score=46.85 Aligned_cols=100 Identities=17% Similarity=0.284 Sum_probs=61.2
Q ss_pred HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhh
Q 024295 76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGI 151 (269)
Q Consensus 76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~ 151 (269)
+.......++.+||.+|+|. |..+..+++. |. +|+++|.+++..+.+++. +.. +.... .+... . ..
T Consensus 22 l~~~~~~~~~~~vLDiGcG~-G~~a~~la~~-g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~---~d~~~-~-~~ 91 (195)
T TIGR00477 22 VREAVKTVAPCKTLDLGCGQ-GRNSLYLSLA-GY-DVRAWDHNPASIASVLDMKARENLP--LRTDA---YDINA-A-AL 91 (195)
T ss_pred HHHHhccCCCCcEEEeCCCC-CHHHHHHHHC-CC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEe---ccchh-c-cc
Confidence 33444555667899999876 8888877774 77 999999998777766442 222 11110 11110 0 11
Q ss_pred hCCCCccEEEEccC-----C---hhHHHHHHHHcccCCcEEEEEc
Q 024295 152 THGMGVDYCFECTG-----V---PSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 152 ~~~~~~d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~g 188 (269)
++ .+|+|+...- . +..+..+.+.|++| |.++.+.
T Consensus 92 -~~-~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lli~~ 133 (195)
T TIGR00477 92 -NE-DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPG-GYNLIVA 133 (195)
T ss_pred -cC-CCCEEEEecccccCCHHHHHHHHHHHHHHhCCC-cEEEEEE
Confidence 23 7999875421 1 23577888899996 9865543
No 223
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.73 E-value=0.0067 Score=50.48 Aligned_cols=75 Identities=17% Similarity=0.059 Sum_probs=51.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCce-eeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTD-FINPDDEPNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
++++++|+|+|+.+.+++..+...|+++|+++.|+.+|.+.+.+ ++... +... ... +++.+.. ..+|+|+
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~-----~~~-~~~~~~~--~~~DiVI 195 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRL-----EGD-SGGLAIE--KAAEVLV 195 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceec-----cch-hhhhhcc--cCCCEEE
Confidence 57899999999999999999999999899999999887776543 43211 1100 000 1111111 2689999
Q ss_pred EccCC
Q 024295 162 ECTGV 166 (269)
Q Consensus 162 d~~g~ 166 (269)
+|+..
T Consensus 196 naTp~ 200 (282)
T TIGR01809 196 STVPA 200 (282)
T ss_pred ECCCC
Confidence 99864
No 224
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.73 E-value=0.042 Score=45.00 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=52.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCc-ee--eCCCCCCCccHHHHHHhhhC-CCCc
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMT-DF--INPDDEPNKSISELVKGITH-GMGV 157 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~ 157 (269)
+++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+ ++++.. .. .|..+ .+++.+.+.+... -..+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~i 81 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGERARFIATDITD--DAAIERAVATVVARFGRV 81 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeeEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence 4678999986 8999999999888999 999999987765544 344422 12 23322 2333333333211 1268
Q ss_pred cEEEEccCC
Q 024295 158 DYCFECTGV 166 (269)
Q Consensus 158 d~v~d~~g~ 166 (269)
|+++++.|.
T Consensus 82 d~lv~~ag~ 90 (261)
T PRK08265 82 DILVNLACT 90 (261)
T ss_pred CEEEECCCC
Confidence 999998863
No 225
>PRK07806 short chain dehydrogenase; Provisional
Probab=96.72 E-value=0.035 Score=44.91 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=59.6
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc-hHHH----HHhCCCc-ee--eCCCCCCCccHHHHHHhhhCC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW-KKEK----GKAFGMT-DF--INPDDEPNKSISELVKGITHG 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~-~~~~----~~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~~ 154 (269)
+++++||+|+ |.+|...+..+...|+ +|+++.++.+ +.+. ++..+.. .. .|..+ +++..+.+.+....
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~ 81 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTD--EESVAALMDTAREE 81 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHh
Confidence 4678999986 8999999998888899 8888887643 2222 2222321 11 23322 22233333322211
Q ss_pred -CCccEEEEccCCh-------------------hHHHHHHHHcccCCcEEEEEcc
Q 024295 155 -MGVDYCFECTGVP-------------------SLLSEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 155 -~~~d~v~d~~g~~-------------------~~~~~~~~~l~~~~G~~v~~g~ 189 (269)
.++|+++.+.+.. ..++.+...+..+ |+++.++.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~-~~iv~isS 135 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAG-SRVVFVTS 135 (248)
T ss_pred CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCC-ceEEEEeC
Confidence 2689998877532 1234444455554 88888865
No 226
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=96.72 E-value=0.01 Score=48.83 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=67.8
Q ss_pred HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc-eeeCCCCCCCccHHHHHHhhhCC
Q 024295 76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT-DFINPDDEPNKSISELVKGITHG 154 (269)
Q Consensus 76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~ 154 (269)
+....++.++.+||-+|+|. |..+..+++..++ +|++++.+++..+.+++.... .-+.... .++. ..-.+.
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~~~i~~~~---~D~~---~~~~~~ 115 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGL-GGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDKNKIEFEA---NDIL---KKDFPE 115 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCC-ChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcCCceEEEE---CCcc---cCCCCC
Confidence 44567888999999999875 6667777777787 999999998888877763211 0011100 1111 001122
Q ss_pred CCccEEEE--cc---C---ChhHHHHHHHHcccCCcEEEEEcc
Q 024295 155 MGVDYCFE--CT---G---VPSLLSEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 155 ~~~d~v~d--~~---g---~~~~~~~~~~~l~~~~G~~v~~g~ 189 (269)
..||+|+- +. + ....+..+.+.|+|| |+++....
T Consensus 116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG-G~lvi~d~ 157 (263)
T PTZ00098 116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN-GILLITDY 157 (263)
T ss_pred CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence 37999985 22 1 123577888999997 99987654
No 227
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.72 E-value=0.032 Score=43.33 Aligned_cols=98 Identities=19% Similarity=0.319 Sum_probs=64.1
Q ss_pred HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHh
Q 024295 77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKG 150 (269)
Q Consensus 77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~ 150 (269)
.....+.++.+||-+|+|. |..+..+++.....+|++++.+++..+.+++ .+.. .++.. +....
T Consensus 24 ~~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~------d~~~~--- 93 (187)
T PRK08287 24 LSKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG------EAPIE--- 93 (187)
T ss_pred HHhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec------Cchhh---
Confidence 3455677889999999876 7777788877543499999999887777654 3322 22221 11111
Q ss_pred hhCCCCccEEEEccC---ChhHHHHHHHHcccCCcEEEEE
Q 024295 151 ITHGMGVDYCFECTG---VPSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 151 ~~~~~~~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~~ 187 (269)
. .+ .+|+|+.... -...+..+.+.++++ |+++..
T Consensus 94 ~-~~-~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~lv~~ 130 (187)
T PRK08287 94 L-PG-KADAIFIGGSGGNLTAIIDWSLAHLHPG-GRLVLT 130 (187)
T ss_pred c-Cc-CCCEEEECCCccCHHHHHHHHHHhcCCC-eEEEEE
Confidence 1 22 7999985432 123567788999996 998764
No 228
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.71 E-value=0.013 Score=54.68 Aligned_cols=77 Identities=27% Similarity=0.368 Sum_probs=55.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc---------------------hHHHHHhCCCceeeCCCCCCCc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW---------------------KKEKGKAFGMTDFINPDDEPNK 142 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~---------------------~~~~~~~~g~~~v~~~~~~~~~ 142 (269)
.+++|+|+|+|+.|+.++..++..|+ +|+++++.+. +.+.++++|.+..++..-..+-
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 387 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI 387 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence 47999999999999999999999999 8999986652 4556677888766665320011
Q ss_pred cHHHHHHhhhCCCCccEEEEccCCh
Q 024295 143 SISELVKGITHGMGVDYCFECTGVP 167 (269)
Q Consensus 143 ~~~~~i~~~~~~~~~d~v~d~~g~~ 167 (269)
.+. ++. .++|.||.++|..
T Consensus 388 ~~~----~l~--~~~DaV~latGa~ 406 (639)
T PRK12809 388 TFS----DLT--SEYDAVFIGVGTY 406 (639)
T ss_pred CHH----HHH--hcCCEEEEeCCCC
Confidence 221 221 2799999999863
No 229
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=96.70 E-value=0.0057 Score=47.34 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=59.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCceeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTDFINPDDEPNKSISELVKGITHGMGVDY 159 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~ 159 (269)
++.+||-+|+|+ |..++.+++.....+|++++.+++..+.++ +.+.+.+ .... .+..+ +.....+|+
T Consensus 42 ~~~~vLDiGcGt-G~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i-~~i~---~d~~~----~~~~~~fD~ 112 (181)
T TIGR00138 42 DGKKVIDIGSGA-GFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNV-EIVN---GRAED----FQHEEQFDV 112 (181)
T ss_pred CCCeEEEecCCC-CccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCe-EEEe---cchhh----ccccCCccE
Confidence 478999999876 777777776654348999999987666554 3443221 1111 22222 112238998
Q ss_pred EEEcc-C-ChhHHHHHHHHcccCCcEEEEE
Q 024295 160 CFECT-G-VPSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 160 v~d~~-g-~~~~~~~~~~~l~~~~G~~v~~ 187 (269)
|+-.. . -+..++.+.+.+++| |+++..
T Consensus 113 I~s~~~~~~~~~~~~~~~~Lkpg-G~lvi~ 141 (181)
T TIGR00138 113 ITSRALASLNVLLELTLNLLKVG-GYFLAY 141 (181)
T ss_pred EEehhhhCHHHHHHHHHHhcCCC-CEEEEE
Confidence 87432 2 233566778899996 998876
No 230
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.024 Score=48.38 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=51.6
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce---eeCCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD---FINPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~ 154 (269)
++++++|+|+ |.+|...++.+...|+ +|+.+++++++.+.+ ++.|... ..|..+ ..+..+.+.+... -
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d--~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVAD--AEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCC--HHHHHHHHHHHHHHC
Confidence 4678999986 8999999998888999 899999988766543 2345332 123322 1223222222211 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|++++++|.
T Consensus 84 g~iD~lInnAg~ 95 (334)
T PRK07109 84 GPIDTWVNNAMV 95 (334)
T ss_pred CCCCEEEECCCc
Confidence 279999999874
No 231
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.01 Score=48.37 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=52.3
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC-ceee--CCCCCCCccHHHHHHhhh-C
Q 024295 83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM-TDFI--NPDDEPNKSISELVKGIT-H 153 (269)
Q Consensus 83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~v~--~~~~~~~~~~~~~i~~~~-~ 153 (269)
..++++||+|+ |.+|..++..+...|+ +|+++++++++.+.+.. .+. .+++ |..+ .+++.+.+.+.. .
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~ 83 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTD--YQSIKAAVAHAETE 83 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHh
Confidence 35789999986 9999999999988999 89999998877654432 121 1222 2222 133333333221 1
Q ss_pred CCCccEEEEccCC
Q 024295 154 GMGVDYCFECTGV 166 (269)
Q Consensus 154 ~~~~d~v~d~~g~ 166 (269)
...+|+++++.|.
T Consensus 84 ~~~~d~li~~ag~ 96 (258)
T PRK06949 84 AGTIDILVNNSGV 96 (258)
T ss_pred cCCCCEEEECCCC
Confidence 1278999998873
No 232
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.68 E-value=0.027 Score=46.57 Aligned_cols=96 Identities=21% Similarity=0.325 Sum_probs=64.3
Q ss_pred cccccchhhhHHHHHHhcCC-CCCCeEEEEcCCh-hHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC
Q 024295 63 SFLSCGFTTGYGAAWKEAKV-EKGSSVAVLGLGT-VGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP 140 (269)
Q Consensus 63 a~~~~~~~~a~~~l~~~~~~-~~~~~vlI~G~g~-~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~ 140 (269)
..+||+....+. +.+...+ -.|++++|+|.|. +|.-+..++...|+ .|+...+..
T Consensus 136 ~~~PcTp~ai~~-ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t--------------------- 192 (286)
T PRK14175 136 TFVPCTPLGIME-ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS--------------------- 192 (286)
T ss_pred CCCCCcHHHHHH-HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc---------------------
Confidence 345554433333 2333332 4789999999865 99999999999999 887776421
Q ss_pred CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295 141 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 141 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
.++.+.++ .+|+|+.++|.+..+.. +.++++ ..++.+|...
T Consensus 193 -~~l~~~~~------~ADIVIsAvg~p~~i~~--~~vk~g-avVIDvGi~~ 233 (286)
T PRK14175 193 -KDMASYLK------DADVIVSAVGKPGLVTK--DVVKEG-AVIIDVGNTP 233 (286)
T ss_pred -hhHHHHHh------hCCEEEECCCCCcccCH--HHcCCC-cEEEEcCCCc
Confidence 22222222 68999999998755444 458886 8888888654
No 233
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.68 E-value=0.027 Score=50.11 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=49.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc--hHHH-HHhCCCce-eeCCCCCCCccHHHHHHh-hhC-CCC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW--KKEK-GKAFGMTD-FINPDDEPNKSISELVKG-ITH-GMG 156 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~--~~~~-~~~~g~~~-v~~~~~~~~~~~~~~i~~-~~~-~~~ 156 (269)
+++++||+|+ |.+|...++.+...|+ +|+++++++. +.+. .++++... ..|..+ .+-.+.+.+ ... ..+
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~---~~~~~~~~~~~~~~~g~ 284 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRVGGTALALDITA---PDAPARIAEHLAERHGG 284 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCC---HHHHHHHHHHHHHhCCC
Confidence 5789999986 9999999999998999 8888887432 2222 23455432 234333 332223222 211 126
Q ss_pred ccEEEEccCC
Q 024295 157 VDYCFECTGV 166 (269)
Q Consensus 157 ~d~v~d~~g~ 166 (269)
+|+++++.|.
T Consensus 285 id~vi~~AG~ 294 (450)
T PRK08261 285 LDIVVHNAGI 294 (450)
T ss_pred CCEEEECCCc
Confidence 9999999873
No 234
>PLN02366 spermidine synthase
Probab=96.67 E-value=0.031 Score=47.06 Aligned_cols=104 Identities=15% Similarity=0.066 Sum_probs=64.3
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CCc-eeeCCCCC--CCccHHHHHHhhhCCCCc
Q 024295 82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GMT-DFINPDDE--PNKSISELVKGITHGMGV 157 (269)
Q Consensus 82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~~-~v~~~~~~--~~~~~~~~i~~~~~~~~~ 157 (269)
....++|||+|+|. |.++..+++.-+..+|++++.+++-.+.++++ ... ..++.... -..+..+.+++..+ ..+
T Consensus 89 ~~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~-~~y 166 (308)
T PLN02366 89 IPNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPE-GTY 166 (308)
T ss_pred CCCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccC-CCC
Confidence 34578999999876 66777888876666899999988878877773 210 00111000 00333333443322 379
Q ss_pred cEEEE-ccC---------ChhHHHHHHHHcccCCcEEEEEc
Q 024295 158 DYCFE-CTG---------VPSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 158 d~v~d-~~g---------~~~~~~~~~~~l~~~~G~~v~~g 188 (269)
|+|+- +.. ....++.+.+.|+++ |.++.-.
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pg-Gvlv~q~ 206 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPG-GVVCTQA 206 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEECc
Confidence 98874 332 112477888999996 9997654
No 235
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.67 E-value=0.013 Score=46.22 Aligned_cols=92 Identities=16% Similarity=0.084 Sum_probs=60.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW-KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE 162 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d 162 (269)
.+++|||+|+|.+|..-++.+...|+ +|++++.... ....+.+.|.-..+. .+ .. .. .+ .++++|+-
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~~l~~l~~~~~i~~~~-~~---~~--~~--dl---~~~~lVi~ 75 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELESELTLLAEQGGITWLA-RC---FD--AD--IL---EGAFLVIA 75 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCHHHHHHHHcCCEEEEe-CC---CC--HH--Hh---CCcEEEEE
Confidence 47899999999999999999999999 8998876543 233333333211221 11 11 11 11 27899999
Q ss_pred ccCChhHHHHHHHHcccCCcEEEEEc
Q 024295 163 CTGVPSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 163 ~~g~~~~~~~~~~~l~~~~G~~v~~g 188 (269)
+++.+..-..+....+.. |..+..-
T Consensus 76 at~d~~ln~~i~~~a~~~-~ilvn~~ 100 (205)
T TIGR01470 76 ATDDEELNRRVAHAARAR-GVPVNVV 100 (205)
T ss_pred CCCCHHHHHHHHHHHHHc-CCEEEEC
Confidence 999875555666666663 7766554
No 236
>PRK00536 speE spermidine synthase; Provisional
Probab=96.66 E-value=0.009 Score=48.83 Aligned_cols=99 Identities=8% Similarity=-0.093 Sum_probs=66.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCC-ceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGM-TDFINPDDEPNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
.-++|||+|+|- |.++-.++|+- ++|+.++-+++-.+.+++ +.. ...++... -.+...+.+...+ .||+||
T Consensus 72 ~pk~VLIiGGGD-Gg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpR---v~l~~~~~~~~~~-~fDVII 144 (262)
T PRK00536 72 ELKEVLIVDGFD-LELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKN---FTHAKQLLDLDIK-KYDLII 144 (262)
T ss_pred CCCeEEEEcCCc-hHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCC---EEEeehhhhccCC-cCCEEE
Confidence 458999998876 77778888875 399999999988888888 331 11222222 2222233332223 899886
Q ss_pred -EccCChhHHHHHHHHcccCCcEEEEEccC
Q 024295 162 -ECTGVPSLLSEALETTKVGKGKVIVIGVG 190 (269)
Q Consensus 162 -d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 190 (269)
|.+-.+...+.+.+.|+++ |.++.-+.+
T Consensus 145 vDs~~~~~fy~~~~~~L~~~-Gi~v~Qs~s 173 (262)
T PRK00536 145 CLQEPDIHKIDGLKRMLKED-GVFISVAKH 173 (262)
T ss_pred EcCCCChHHHHHHHHhcCCC-cEEEECCCC
Confidence 6565565678899999996 998876543
No 237
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.66 E-value=0.01 Score=47.69 Aligned_cols=102 Identities=24% Similarity=0.318 Sum_probs=65.3
Q ss_pred HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhC----CCce--eeCCCCCCCccHHHHHH
Q 024295 77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAF----GMTD--FINPDDEPNKSISELVK 149 (269)
Q Consensus 77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~----g~~~--v~~~~~~~~~~~~~~i~ 149 (269)
.....++++++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++. +.+. ++.. +..+ +
T Consensus 38 l~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~------d~~~-~- 108 (231)
T TIGR02752 38 MKRMNVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHG------NAME-L- 108 (231)
T ss_pred HHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEe------chhc-C-
Confidence 3456778899999999876 7777888887643 3899999998877776542 2211 1211 1111 0
Q ss_pred hhhCCCCccEEEEccC------ChhHHHHHHHHcccCCcEEEEEcc
Q 024295 150 GITHGMGVDYCFECTG------VPSLLSEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 150 ~~~~~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~ 189 (269)
.. +...+|+|+-... ....+..+.+.+++| |+++....
T Consensus 109 ~~-~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 152 (231)
T TIGR02752 109 PF-DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPG-GKVVCLET 152 (231)
T ss_pred CC-CCCCccEEEEecccccCCCHHHHHHHHHHHcCcC-eEEEEEEC
Confidence 11 2237999874321 123467788999997 99987653
No 238
>PRK07825 short chain dehydrogenase; Provisional
Probab=96.66 E-value=0.012 Score=48.53 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=51.4
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCC-Cce-eeCCCCCCCccHHHHHHhhhCC-CCccE
Q 024295 85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFG-MTD-FINPDDEPNKSISELVKGITHG-MGVDY 159 (269)
Q Consensus 85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g-~~~-v~~~~~~~~~~~~~~i~~~~~~-~~~d~ 159 (269)
+.++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+ ++++ ... ..|..+ ++++.+.+.+.... .++|+
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~ 81 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELGLVVGGPLDVTD--PASFAAFLDAVEADLGPIDV 81 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEccCCC--HHHHHHHHHHHHHHcCCCCE
Confidence 578999986 8999999888888899 899999888776654 3344 221 223332 23333333332211 27999
Q ss_pred EEEccCC
Q 024295 160 CFECTGV 166 (269)
Q Consensus 160 v~d~~g~ 166 (269)
++++.|.
T Consensus 82 li~~ag~ 88 (273)
T PRK07825 82 LVNNAGV 88 (273)
T ss_pred EEECCCc
Confidence 9999874
No 239
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.66 E-value=0.013 Score=47.41 Aligned_cols=79 Identities=22% Similarity=0.221 Sum_probs=51.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc---eeeCCCCCCCccHHHHHHhhhCC-
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT---DFINPDDEPNKSISELVKGITHG- 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~---~v~~~~~~~~~~~~~~i~~~~~~- 154 (269)
+++++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+ ++.+.. ...|-.+ .....+.+.+....
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTD--EEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence 4788999986 9999999999988999 899999887665443 223432 1223222 12232323332221
Q ss_pred CCccEEEEccC
Q 024295 155 MGVDYCFECTG 165 (269)
Q Consensus 155 ~~~d~v~d~~g 165 (269)
.++|.+++++|
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 27899999887
No 240
>PLN02244 tocopherol O-methyltransferase
Probab=96.65 E-value=0.0083 Score=51.34 Aligned_cols=97 Identities=19% Similarity=0.305 Sum_probs=62.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGITHGMGVD 158 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d 158 (269)
+++++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++. +...-+.... .+..+ + .. +...||
T Consensus 117 ~~~~~VLDiGCG~-G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~---~D~~~-~-~~-~~~~FD 188 (340)
T PLN02244 117 KRPKRIVDVGCGI-GGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQV---ADALN-Q-PF-EDGQFD 188 (340)
T ss_pred CCCCeEEEecCCC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---cCccc-C-CC-CCCCcc
Confidence 6789999999986 7788888888888 999999998877766542 3211011110 11100 0 11 223799
Q ss_pred EEEEccC------ChhHHHHHHHHcccCCcEEEEEc
Q 024295 159 YCFECTG------VPSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 159 ~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g 188 (269)
+|+-.-. ....+.++.+.+++| |+++...
T Consensus 189 ~V~s~~~~~h~~d~~~~l~e~~rvLkpG-G~lvi~~ 223 (340)
T PLN02244 189 LVWSMESGEHMPDKRKFVQELARVAAPG-GRIIIVT 223 (340)
T ss_pred EEEECCchhccCCHHHHHHHHHHHcCCC-cEEEEEE
Confidence 9975321 123578899999997 9998765
No 241
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.64 E-value=0.041 Score=43.37 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=64.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITHGMGVDY 159 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~ 159 (269)
++.+||-+|+|. |..+..+++.....++++++.+++..+.+++ .+...+ .... .+..+.+........+|.
T Consensus 40 ~~~~VLDiGcGt-G~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v-~~~~---~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFGK-GEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNL-RLLC---GDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCeEEEEccCC-CHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCE-EEEe---cCHHHHHHHHcCccccce
Confidence 578899999987 8888888887644489999999988887754 232211 1111 333233332222337998
Q ss_pred EEEccC--------------ChhHHHHHHHHcccCCcEEEEEc
Q 024295 160 CFECTG--------------VPSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 160 v~d~~g--------------~~~~~~~~~~~l~~~~G~~v~~g 188 (269)
|+-... .+..+..+.+.++++ |.++...
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~l~i~~ 156 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG-GEIHFAT 156 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCC-CEEEEEc
Confidence 874322 133578889999996 9998764
No 242
>PRK06841 short chain dehydrogenase; Provisional
Probab=96.64 E-value=0.012 Score=47.88 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=51.3
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc----eeeCCCCCCCccHHHHHHhhhC-CCCc
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT----DFINPDDEPNKSISELVKGITH-GMGV 157 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~----~v~~~~~~~~~~~~~~i~~~~~-~~~~ 157 (269)
+++++||+|+ |.+|...++.+...|+ +|+.++++++..+...+.... ...|-.+ +..+.+.+.+..+ -.++
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~~ 90 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQLLGGNAKGLVCDVSD--SQSVEAAVAAVISAFGRI 90 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhhCCceEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence 4689999986 8999999888888899 899999887655544443211 1123222 2223333332211 1278
Q ss_pred cEEEEccCC
Q 024295 158 DYCFECTGV 166 (269)
Q Consensus 158 d~v~d~~g~ 166 (269)
|+++.++|.
T Consensus 91 d~vi~~ag~ 99 (255)
T PRK06841 91 DILVNSAGV 99 (255)
T ss_pred CEEEECCCC
Confidence 999998874
No 243
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.63 E-value=0.0066 Score=54.04 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=63.1
Q ss_pred HhcCCCCCCeEE----EEc-CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc-eeeCCCCCCCccHHHHHHhh
Q 024295 78 KEAKVEKGSSVA----VLG-LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT-DFINPDDEPNKSISELVKGI 151 (269)
Q Consensus 78 ~~~~~~~~~~vl----I~G-~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~ 151 (269)
...++++++.+| |+| +|++|.+++|+++..|+ .|+++...+++....+..+.+ .+++... ..+.+.+...
T Consensus 27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~l~~~ 102 (450)
T PRK08261 27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDATG---ITDPADLKAL 102 (450)
T ss_pred cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECCC---CCCHHHHHHH
Confidence 456778888888 886 59999999999999999 999887665544333333433 4555544 3344444332
Q ss_pred hCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295 152 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 152 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
. ..+...++.+.++ |+++.++...
T Consensus 103 ~---------------~~~~~~l~~l~~~-griv~i~s~~ 126 (450)
T PRK08261 103 Y---------------EFFHPVLRSLAPC-GRVVVLGRPP 126 (450)
T ss_pred H---------------HHHHHHHHhccCC-CEEEEEcccc
Confidence 1 2456667778885 8888887654
No 244
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.62 E-value=0.061 Score=45.73 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=66.7
Q ss_pred CCCCeEEEEcCChhHHHHHHH-HHHcCCCeEEEEcCCcchHHHHHh-----CCCceeeCCCCCCCccHHHHHHhhhCCCC
Q 024295 83 EKGSSVAVLGLGTVGLGAVDG-ARMHGAAKIIGIDKNPWKKEKGKA-----FGMTDFINPDDEPNKSISELVKGITHGMG 156 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~l-a~~~g~~~v~~~~~~~~~~~~~~~-----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~ 156 (269)
...++++|+|+|..|...+.. +...+.++|.+.++++++.+.+.+ ++.. +... .+..+.+ ..
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~-----~~~~~~~------~~ 192 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVV-----NSADEAI------EE 192 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEe-----CCHHHHH------hc
Confidence 356789999999999776654 445688899999999887765432 2332 1111 2233333 16
Q ss_pred ccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchh
Q 024295 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNV 199 (269)
Q Consensus 157 ~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~ 199 (269)
.|+|+.|++....+- . +.+++| -++..+|.......+++.
T Consensus 193 aDiVi~aT~s~~p~i-~-~~l~~G-~hV~~iGs~~p~~~E~~~ 232 (325)
T PRK08618 193 ADIIVTVTNAKTPVF-S-EKLKKG-VHINAVGSFMPDMQELPS 232 (325)
T ss_pred CCEEEEccCCCCcch-H-HhcCCC-cEEEecCCCCcccccCCH
Confidence 899999997664333 3 788996 888888876532334444
No 245
>PRK06953 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.02 Score=45.57 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=51.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc-eeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295 86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT-DFINPDDEPNKSISELVKGITHGMGVDYCFEC 163 (269)
Q Consensus 86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 163 (269)
++++|+|+ |.+|...++.+...|+ +|+.+++++++.+.++..+.. ...|-.+ ...+.+.+.+. .+.++|+++.+
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~-~~~~~d~vi~~ 77 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGAEALALDVAD--PASVAGLAWKL-DGEALDAAVYV 77 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccceEEEecCCC--HHHHHHHHHHh-cCCCCCEEEEC
Confidence 46899985 8999999888777899 899999988777766665543 2233332 12233322233 23379999998
Q ss_pred cCC
Q 024295 164 TGV 166 (269)
Q Consensus 164 ~g~ 166 (269)
.|.
T Consensus 78 ag~ 80 (222)
T PRK06953 78 AGV 80 (222)
T ss_pred CCc
Confidence 764
No 246
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.60 E-value=0.017 Score=43.23 Aligned_cols=75 Identities=27% Similarity=0.281 Sum_probs=50.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
.++.+++|+|+|.+|...++.+...|..+|+++++++++.+.+ ++++... +.... .+..+.+ .++|+|+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~------~~~Dvvi 86 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG-IAIAY---LDLEELL------AEADLII 86 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc-cceee---cchhhcc------ccCCEEE
Confidence 4578899999999999999888888644899999988776654 4455321 00000 1111111 2789999
Q ss_pred EccCCh
Q 024295 162 ECTGVP 167 (269)
Q Consensus 162 d~~g~~ 167 (269)
.|++..
T Consensus 87 ~~~~~~ 92 (155)
T cd01065 87 NTTPVG 92 (155)
T ss_pred eCcCCC
Confidence 999754
No 247
>PRK08339 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.016 Score=47.61 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=51.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C----CCc-e--eeCCCCCCCccHHHHHHhhhCC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F----GMT-D--FINPDDEPNKSISELVKGITHG 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~----g~~-~--v~~~~~~~~~~~~~~i~~~~~~ 154 (269)
+++++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+ + +.. . ..|-.+ +.+..+.+.+...-
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~i~~~~~~~~~~ 83 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK--REDLERTVKELKNI 83 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC--HHHHHHHHHHHHhh
Confidence 4788999986 8999999999999999 89999998776654432 1 321 1 223222 23333333332221
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|+++++.|.
T Consensus 84 g~iD~lv~nag~ 95 (263)
T PRK08339 84 GEPDIFFFSTGG 95 (263)
T ss_pred CCCcEEEECCCC
Confidence 279999998874
No 248
>PRK07831 short chain dehydrogenase; Provisional
Probab=96.57 E-value=0.017 Score=47.33 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=52.0
Q ss_pred CCCCCeEEEEcC-C-hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----CCCcee----eCCCCCCCccHHHHHHh
Q 024295 82 VEKGSSVAVLGL-G-TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-----FGMTDF----INPDDEPNKSISELVKG 150 (269)
Q Consensus 82 ~~~~~~vlI~G~-g-~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-----~g~~~v----~~~~~~~~~~~~~~i~~ 150 (269)
+.+++++||+|+ | ++|.+.++.+...|+ +|+.+++++++.+...+ ++...+ .|..+ ++...+.+.+
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~ 90 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS--EAQVDALIDA 90 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC--HHHHHHHHHH
Confidence 345789999986 6 799999999999999 89999888766554322 342221 23322 1223222322
Q ss_pred hhC-CCCccEEEEccCC
Q 024295 151 ITH-GMGVDYCFECTGV 166 (269)
Q Consensus 151 ~~~-~~~~d~v~d~~g~ 166 (269)
... ..++|+++++.|.
T Consensus 91 ~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 91 AVERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 211 1279999999974
No 249
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=96.57 E-value=0.054 Score=46.67 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=62.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHc--CCCeEEEEc--CCcchHHH-HHhCCCceeeCCCCCCCccH--------------H
Q 024295 86 SSVAVLGL-GTVGLGAVDGARMH--GAAKIIGID--KNPWKKEK-GKAFGMTDFINPDDEPNKSI--------------S 145 (269)
Q Consensus 86 ~~vlI~G~-g~~G~~a~~la~~~--g~~~v~~~~--~~~~~~~~-~~~~g~~~v~~~~~~~~~~~--------------~ 145 (269)
++|.|+|+ |++|..+++..+.. .+ +|++++ ++.++... ++++++..++-.++.....+ .
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f-~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRF-RVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCcccc-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence 57899995 99999999988765 45 777774 44444443 46688776554432000001 1
Q ss_pred HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEc
Q 024295 146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g 188 (269)
+.+.++.....+|+|+.++++...+.-.+..++. |+-+.+.
T Consensus 81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~a--GK~VaLA 121 (385)
T PRK05447 81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRA--GKRIALA 121 (385)
T ss_pred hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHC--CCcEEEe
Confidence 1222333334799999999876677778888877 4444443
No 250
>PLN02780 ketoreductase/ oxidoreductase
Probab=96.56 E-value=0.015 Score=49.30 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=52.6
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----CC-Cc---eeeCCCCCCCccHHHHHHhhhC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-----FG-MT---DFINPDDEPNKSISELVKGITH 153 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-----~g-~~---~v~~~~~~~~~~~~~~i~~~~~ 153 (269)
.|++++|+|+ |++|.+.+..+...|+ +|+.+++++++.+.+.+ .+ .. ...|-.+ +..+..+.+.+..+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~l~~~~~ 129 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG-DIDEGVKRIKETIE 129 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC-CcHHHHHHHHHHhc
Confidence 4789999996 8999998887777899 89999999887765422 22 11 1223221 11233444555444
Q ss_pred CCCccEEEEccCC
Q 024295 154 GMGVDYCFECTGV 166 (269)
Q Consensus 154 ~~~~d~v~d~~g~ 166 (269)
+..+|++++++|.
T Consensus 130 ~~didilVnnAG~ 142 (320)
T PLN02780 130 GLDVGVLINNVGV 142 (320)
T ss_pred CCCccEEEEecCc
Confidence 4467799998863
No 251
>PRK08317 hypothetical protein; Provisional
Probab=96.56 E-value=0.033 Score=44.73 Aligned_cols=102 Identities=24% Similarity=0.348 Sum_probs=68.3
Q ss_pred HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhC----CC-ceeeCCCCCCCccHHHHHH
Q 024295 76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKAF----GM-TDFINPDDEPNKSISELVK 149 (269)
Q Consensus 76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~~----g~-~~v~~~~~~~~~~~~~~i~ 149 (269)
+.+...+.++.+||.+|+|. |..+..+++..+ ..++++++.+++..+.+++. +. ..+...+. ...
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~----- 81 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA---DGL----- 81 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc---ccC-----
Confidence 34567788999999999987 888889998874 24899999998888877664 11 11221111 110
Q ss_pred hhhCCCCccEEEEcc------CChhHHHHHHHHcccCCcEEEEEc
Q 024295 150 GITHGMGVDYCFECT------GVPSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 150 ~~~~~~~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g 188 (269)
.+.+ ..+|+|+-.. .....+..+.+.++++ |.++...
T Consensus 82 ~~~~-~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~ 124 (241)
T PRK08317 82 PFPD-GSFDAVRSDRVLQHLEDPARALAEIARVLRPG-GRVVVLD 124 (241)
T ss_pred CCCC-CCceEEEEechhhccCCHHHHHHHHHHHhcCC-cEEEEEe
Confidence 1122 3789887432 2233678899999996 9988765
No 252
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.54 E-value=0.0056 Score=42.65 Aligned_cols=89 Identities=22% Similarity=0.226 Sum_probs=58.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC 163 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 163 (269)
++++|||+|+|.+|..-++.+...|+ +|+++++.. +..++. ..+ . . ..+. +. -.++++|+-+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~---~~~~~~-i~~-~-~-----~~~~----~~--l~~~~lV~~a 67 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI---EFSEGL-IQL-I-R-----REFE----ED--LDGADLVFAA 67 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE---HHHHTS-CEE-E-E-----SS-G----GG--CTTESEEEE-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch---hhhhhH-HHH-H-h-----hhHH----HH--HhhheEEEec
Confidence 57899999999999999999999999 999998764 222211 111 1 1 2221 11 1279999999
Q ss_pred cCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295 164 TGVPSLLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
++.+..-+.+.+..+.. |..+...+.+
T Consensus 68 t~d~~~n~~i~~~a~~~-~i~vn~~D~p 94 (103)
T PF13241_consen 68 TDDPELNEAIYADARAR-GILVNVVDDP 94 (103)
T ss_dssp SS-HHHHHHHHHHHHHT-TSEEEETT-C
T ss_pred CCCHHHHHHHHHHHhhC-CEEEEECCCc
Confidence 98886666777777764 8888876544
No 253
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.54 E-value=0.021 Score=48.01 Aligned_cols=103 Identities=11% Similarity=0.063 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHH-cCCCeEEEEcCCcchHHHHH-hCCCc--eeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARM-HGAAKIIGIDKNPWKKEKGK-AFGMT--DFINPDDEPNKSISELVKGITHGMGVD 158 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~-~g~~~v~~~~~~~~~~~~~~-~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d 158 (269)
....+++|+|+|..|.+.+..+.. .+.++|.+.++++++.+.+. ++... .+. . .+..+.+. +.|
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~-----~~~~~av~------~aD 190 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-P-----LDGEAIPE------AVD 190 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-E-----CCHHHHhh------cCC
Confidence 356889999999999888877764 67779999999988766543 34211 111 1 22333332 789
Q ss_pred EEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhH
Q 024295 159 YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVI 200 (269)
Q Consensus 159 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~ 200 (269)
+|+.|+.++..+-..+ +++| -++..+|.......+++..
T Consensus 191 iVitaT~s~~Pl~~~~--~~~g-~hi~~iGs~~p~~~El~~~ 229 (304)
T PRK07340 191 LVVTATTSRTPVYPEA--ARAG-RLVVAVGAFTPDMAELAPR 229 (304)
T ss_pred EEEEccCCCCceeCcc--CCCC-CEEEecCCCCCCcccCCHH
Confidence 9999997654433333 7886 8888988765434455543
No 254
>PRK05872 short chain dehydrogenase; Provisional
Probab=96.54 E-value=0.017 Score=48.39 Aligned_cols=80 Identities=18% Similarity=0.175 Sum_probs=53.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCC--ce-e--eCCCCCCCccHHHHHHhhhC-CC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGM--TD-F--INPDDEPNKSISELVKGITH-GM 155 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~--~~-v--~~~~~~~~~~~~~~i~~~~~-~~ 155 (269)
+++++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+ ++++. .. . .|-.+ .++..+.+.+... -.
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTD--LAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCC--HHHHHHHHHHHHHHcC
Confidence 5789999986 8999999999999999 899999988776654 33442 11 1 33332 1223233333221 12
Q ss_pred CccEEEEccCC
Q 024295 156 GVDYCFECTGV 166 (269)
Q Consensus 156 ~~d~v~d~~g~ 166 (269)
++|++++++|.
T Consensus 85 ~id~vI~nAG~ 95 (296)
T PRK05872 85 GIDVVVANAGI 95 (296)
T ss_pred CCCEEEECCCc
Confidence 79999999874
No 255
>PRK06196 oxidoreductase; Provisional
Probab=96.54 E-value=0.016 Score=48.92 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=51.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCC-Cce-eeCCCCCCCccHHHHHHhhhC-CCCcc
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFG-MTD-FINPDDEPNKSISELVKGITH-GMGVD 158 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g-~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d 158 (269)
.++++||+|+ |.+|.+++..+...|+ +|+++++++++.+.+. ++. ... ..|-.+ .....+.+.+... ..++|
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d--~~~v~~~~~~~~~~~~~iD 101 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGIDGVEVVMLDLAD--LESVRAFAERFLDSGRRID 101 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhhCeEEEccCCC--HHHHHHHHHHHHhcCCCCC
Confidence 4688999986 8999999888888899 8999999877655432 222 221 123222 1223233333222 13799
Q ss_pred EEEEccCC
Q 024295 159 YCFECTGV 166 (269)
Q Consensus 159 ~v~d~~g~ 166 (269)
++++++|.
T Consensus 102 ~li~nAg~ 109 (315)
T PRK06196 102 ILINNAGV 109 (315)
T ss_pred EEEECCCC
Confidence 99998873
No 256
>PRK12829 short chain dehydrogenase; Provisional
Probab=96.53 E-value=0.015 Score=47.55 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=51.8
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc--e--eeCCCCCCCccHHHHHHhhhC-CC
Q 024295 83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT--D--FINPDDEPNKSISELVKGITH-GM 155 (269)
Q Consensus 83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~--~--v~~~~~~~~~~~~~~i~~~~~-~~ 155 (269)
-++.++||+|+ |.+|..+++.+...|+ +|++++++++..+.+.+ .... . ..|..+ +..+.+.+.+..+ -.
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~ 85 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGAKVTATVADVAD--PAQVERVFDTAVERFG 85 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCceEEEEccCCC--HHHHHHHHHHHHHHhC
Confidence 47789999986 9999999999988999 89999988766655433 2211 1 223322 1222222222211 12
Q ss_pred CccEEEEccCC
Q 024295 156 GVDYCFECTGV 166 (269)
Q Consensus 156 ~~d~v~d~~g~ 166 (269)
++|+|+.++|.
T Consensus 86 ~~d~vi~~ag~ 96 (264)
T PRK12829 86 GLDVLVNNAGI 96 (264)
T ss_pred CCCEEEECCCC
Confidence 79999998874
No 257
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=96.53 E-value=0.016 Score=47.51 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=52.2
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc-ee--eCCCCCCCccHHHHHHhhhC-CCCc
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT-DF--INPDDEPNKSISELVKGITH-GMGV 157 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~ 157 (269)
+++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+.+ ++.. .. .|-.+ ..+..+.+.+... -..+
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i 81 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRFGDHVLVVEGDVTS--YADNQRAVDQTVDAFGKL 81 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC--HHHHHHHHHHHHHhcCCC
Confidence 4688999986 8999999998888999 89999998877666544 3321 12 22222 1223333333211 1279
Q ss_pred cEEEEccCC
Q 024295 158 DYCFECTGV 166 (269)
Q Consensus 158 d~v~d~~g~ 166 (269)
|++++++|.
T Consensus 82 d~li~~ag~ 90 (263)
T PRK06200 82 DCFVGNAGI 90 (263)
T ss_pred CEEEECCCC
Confidence 999998873
No 258
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=96.53 E-value=0.016 Score=47.55 Aligned_cols=79 Identities=23% Similarity=0.199 Sum_probs=51.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc-eee--CCCCCCCccHHHHHHhhhCC-CCc
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT-DFI--NPDDEPNKSISELVKGITHG-MGV 157 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~v~--~~~~~~~~~~~~~i~~~~~~-~~~ 157 (269)
++++++|+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+++ .+.. ..+ |..+ .....+.+.+.... ..+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i 80 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAAHGDAVVGVEGDVRS--LDDHKEAVARCVAAFGKI 80 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCceEEEEeccCC--HHHHHHHHHHHHHHhCCC
Confidence 4789999986 8999999998888999 99999988877666654 2321 112 2222 12233333332211 278
Q ss_pred cEEEEccC
Q 024295 158 DYCFECTG 165 (269)
Q Consensus 158 d~v~d~~g 165 (269)
|+++++.|
T Consensus 81 d~li~~Ag 88 (262)
T TIGR03325 81 DCLIPNAG 88 (262)
T ss_pred CEEEECCC
Confidence 99999886
No 259
>PRK07574 formate dehydrogenase; Provisional
Probab=96.53 E-value=0.04 Score=47.79 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=57.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC 163 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 163 (269)
.+++|.|+|.|.+|...++.++..|. +|++.+++....+..++++.... .++.+.+. ..|+|+-+
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g~~~~--------~~l~ell~------~aDvV~l~ 255 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELGLTYH--------VSFDSLVS------VCDVVTIH 255 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcCceec--------CCHHHHhh------cCCEEEEc
Confidence 46889999999999999999999999 99999987644443344443211 12222221 46777766
Q ss_pred cCChhHH-----HHHHHHcccCCcEEEEEcc
Q 024295 164 TGVPSLL-----SEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 164 ~g~~~~~-----~~~~~~l~~~~G~~v~~g~ 189 (269)
....+.. ...+..++++ ..+|.++.
T Consensus 256 lPlt~~T~~li~~~~l~~mk~g-a~lIN~aR 285 (385)
T PRK07574 256 CPLHPETEHLFDADVLSRMKRG-SYLVNTAR 285 (385)
T ss_pred CCCCHHHHHHhCHHHHhcCCCC-cEEEECCC
Confidence 6432221 2345566774 66666653
No 260
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.53 E-value=0.012 Score=46.32 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
+..+|+|+|+|++|...++.+...|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999999999999998888999889999876
No 261
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.52 E-value=0.014 Score=47.36 Aligned_cols=80 Identities=20% Similarity=0.196 Sum_probs=51.1
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CC--Cc-ee--eCCCCCCCccHHHHHHhhh-CCC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FG--MT-DF--INPDDEPNKSISELVKGIT-HGM 155 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g--~~-~v--~~~~~~~~~~~~~~i~~~~-~~~ 155 (269)
+++++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.. +. .. .. .|..+ +..+...+.+.. ...
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSD--EADVEAAVAAALERFG 80 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHhC
Confidence 4678999986 8999999888888899 89999999876654422 22 11 11 22222 233333333321 113
Q ss_pred CccEEEEccCC
Q 024295 156 GVDYCFECTGV 166 (269)
Q Consensus 156 ~~d~v~d~~g~ 166 (269)
.+|+++.+.|.
T Consensus 81 ~~d~vi~~ag~ 91 (251)
T PRK07231 81 SVDILVNNAGT 91 (251)
T ss_pred CCCEEEECCCC
Confidence 79999998874
No 262
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.51 E-value=0.032 Score=46.29 Aligned_cols=88 Identities=17% Similarity=0.327 Sum_probs=56.8
Q ss_pred eEEEEcCChhHHHH-HHHHHHcCCCeEEEE-cCCcch--HHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295 87 SVAVLGLGTVGLGA-VDGARMHGAAKIIGI-DKNPWK--KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE 162 (269)
Q Consensus 87 ~vlI~G~g~~G~~a-~~la~~~g~~~v~~~-~~~~~~--~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d 162 (269)
+|.|+|+|.+|... ..+.+..+. ++.++ +.++++ ++.++++|..... .++...+. ...+|+||+
T Consensus 3 rVAIIG~G~IG~~h~~~ll~~~~~-elvaV~d~d~es~~la~A~~~Gi~~~~-------~~~e~ll~----~~dIDaV~i 70 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLRSEHL-EMVAMVGIDPESDGLARARELGVKTSA-------EGVDGLLA----NPDIDIVFD 70 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCc-EEEEEEeCCcccHHHHHHHHCCCCEEE-------CCHHHHhc----CCCCCEEEE
Confidence 58899999999754 566655566 55554 445544 4567778865433 22222222 237999999
Q ss_pred ccCChhHHHHHHHHcccCCcEEEEEc
Q 024295 163 CTGVPSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 163 ~~g~~~~~~~~~~~l~~~~G~~v~~g 188 (269)
+++...+.+.+...+.. |+.+..-
T Consensus 71 aTp~~~H~e~a~~al~a--Gk~VIde 94 (285)
T TIGR03215 71 ATSAKAHARHARLLAEL--GKIVIDL 94 (285)
T ss_pred CCCcHHHHHHHHHHHHc--CCEEEEC
Confidence 99988777777777666 5555443
No 263
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.51 E-value=0.021 Score=49.76 Aligned_cols=91 Identities=22% Similarity=0.281 Sum_probs=55.5
Q ss_pred EEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh--CC--Cc-eeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295 88 VAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA--FG--MT-DFINPDDEPNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 88 vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~--~g--~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
|+|+|+|.+|..+++.+...+. .+|++.+++.++.+.+.+ .+ .. ..+|..+ .. .+.+... +.|+|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~-~l~~~~~--~~dvVi 72 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVND-----PE-SLAELLR--GCDVVI 72 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTT-----HH-HHHHHHT--TSSEEE
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCC-----HH-HHHHHHh--cCCEEE
Confidence 6899999999999998887654 389999999998777654 22 22 2333322 22 2444433 569999
Q ss_pred EccCChhHHHHHHHHcccCCcEEEEE
Q 024295 162 ECTGVPSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 162 d~~g~~~~~~~~~~~l~~~~G~~v~~ 187 (269)
+|+|.......+-.++..| -+++..
T Consensus 73 n~~gp~~~~~v~~~~i~~g-~~yvD~ 97 (386)
T PF03435_consen 73 NCAGPFFGEPVARACIEAG-VHYVDT 97 (386)
T ss_dssp E-SSGGGHHHHHHHHHHHT--EEEES
T ss_pred ECCccchhHHHHHHHHHhC-CCeecc
Confidence 9998764444444455664 677773
No 264
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.49 E-value=0.039 Score=45.34 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=31.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
.+.+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46789999999999999999999998899999854
No 265
>PLN00203 glutamyl-tRNA reductase
Probab=96.49 E-value=0.017 Score=52.08 Aligned_cols=98 Identities=18% Similarity=0.234 Sum_probs=63.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CC-Cce-eeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FG-MTD-FINPDDEPNKSISELVKGITHGMGVDYC 160 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g-~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~v 160 (269)
.+.+|+|+|+|.+|.+++..+...|+++|+++.++.++.+.+.+ ++ ... +... .+..+.+ ...|+|
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~-----~dl~~al------~~aDVV 333 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPL-----DEMLACA------AEADVV 333 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecH-----hhHHHHH------hcCCEE
Confidence 36899999999999999999999998789999999888776644 53 221 1111 1222222 178999
Q ss_pred EEccCChhH--HHHHHHHcccC---Cc---EEEEEccCCC
Q 024295 161 FECTGVPSL--LSEALETTKVG---KG---KVIVIGVGVD 192 (269)
Q Consensus 161 ~d~~g~~~~--~~~~~~~l~~~---~G---~~v~~g~~~~ 192 (269)
|.|++.+.. ....++.+.++ .+ .++.++.|..
T Consensus 334 IsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRd 373 (519)
T PLN00203 334 FTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRN 373 (519)
T ss_pred EEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence 999875432 33444443221 02 4666666553
No 266
>PRK06500 short chain dehydrogenase; Provisional
Probab=96.49 E-value=0.017 Score=46.75 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=51.1
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCce-ee--CCCCCCCccHHHHHHhhhC-CCCc
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTD-FI--NPDDEPNKSISELVKGITH-GMGV 157 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-~~~~ 157 (269)
++++++|+|+ |.+|...++.+...|+ +|+.+++++++.+.+ ++++... .+ |..+ ..+..+.+..... ..++
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~i 81 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGESALVIRADAGD--VAAQKALAQALAEAFGRL 81 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence 4678999986 9999999999999999 899999887665544 3355321 12 2221 1222222222211 1279
Q ss_pred cEEEEccCC
Q 024295 158 DYCFECTGV 166 (269)
Q Consensus 158 d~v~d~~g~ 166 (269)
|++++++|.
T Consensus 82 d~vi~~ag~ 90 (249)
T PRK06500 82 DAVFINAGV 90 (249)
T ss_pred CEEEECCCC
Confidence 999998864
No 267
>PRK07904 short chain dehydrogenase; Provisional
Probab=96.49 E-value=0.029 Score=45.83 Aligned_cols=82 Identities=20% Similarity=0.249 Sum_probs=49.4
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHc-CCCeEEEEcCCcch-HHH----HHhCCC--ceee--CCCCCCCccHHHHHHh
Q 024295 82 VEKGSSVAVLGL-GTVGLGAVDGARMH-GAAKIIGIDKNPWK-KEK----GKAFGM--TDFI--NPDDEPNKSISELVKG 150 (269)
Q Consensus 82 ~~~~~~vlI~G~-g~~G~~a~~la~~~-g~~~v~~~~~~~~~-~~~----~~~~g~--~~v~--~~~~~~~~~~~~~i~~ 150 (269)
+-.++++||+|+ |++|.+.++-+... |+ +|+.+++++++ .+. ++..+. .+++ |..+ ..+..+.+.+
T Consensus 5 ~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~--~~~~~~~~~~ 81 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALD--TDSHPKVIDA 81 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCC--hHHHHHHHHH
Confidence 345688999986 89999988776666 47 99999988765 332 233332 1222 3222 2333333333
Q ss_pred hhCCCCccEEEEccCC
Q 024295 151 ITHGMGVDYCFECTGV 166 (269)
Q Consensus 151 ~~~~~~~d~v~d~~g~ 166 (269)
.....++|+++.+.|.
T Consensus 82 ~~~~g~id~li~~ag~ 97 (253)
T PRK07904 82 AFAGGDVDVAIVAFGL 97 (253)
T ss_pred HHhcCCCCEEEEeeec
Confidence 3222379999887754
No 268
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.48 E-value=0.027 Score=47.08 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=31.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP 119 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~ 119 (269)
++++++|+|+|++|.+++..+...|+++|+.+.|++
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 468899999999999998888889997799999886
No 269
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.48 E-value=0.031 Score=46.31 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=67.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCce--eeCCCCC-CCccHHHHHHhhhCCCCccEEE
Q 024295 86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTD--FINPDDE-PNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~--v~~~~~~-~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
++|||+|.|. |..+-.++|+...+++++++-+++-.+.+++ ++..+ ..|.+-. -.+|-.+-+++.. . +||+|+
T Consensus 78 k~VLiiGgGd-G~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~-~-~fDvIi 154 (282)
T COG0421 78 KRVLIIGGGD-GGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE-E-KFDVII 154 (282)
T ss_pred CeEEEECCCc-cHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC-C-cCCEEE
Confidence 6999998765 7777788898888899999999999998887 33111 1112110 0134444444432 3 899886
Q ss_pred -EccCC---------hhHHHHHHHHcccCCcEEEEEc
Q 024295 162 -ECTGV---------PSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 162 -d~~g~---------~~~~~~~~~~l~~~~G~~v~~g 188 (269)
|++.. ...++.+-+.|+++ |.++.-.
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~-Gi~v~q~ 190 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKED-GIFVAQA 190 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCCC-cEEEEec
Confidence 66643 33578889999996 9988773
No 270
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.47 E-value=0.016 Score=48.54 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=50.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-eee--CCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DFI--NPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v~--~~~~~~~~~~~~~i~~~~~-~ 154 (269)
.++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+ .+.+ ..+ |-.+ .+.+.+.+.+... -
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSD--LDAVDALVADVEKRI 115 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence 3578999986 8999999998888899 99999998876654432 2322 122 2222 1223222322211 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|++++++|.
T Consensus 116 g~id~li~~AG~ 127 (293)
T PRK05866 116 GGVDILINNAGR 127 (293)
T ss_pred CCCCEEEECCCC
Confidence 279999999874
No 271
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.46 E-value=0.021 Score=53.41 Aligned_cols=76 Identities=25% Similarity=0.332 Sum_probs=52.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc---------------------hHHHHHhCCCceeeCCCCCCCc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW---------------------KKEKGKAFGMTDFINPDDEPNK 142 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~---------------------~~~~~~~~g~~~v~~~~~~~~~ 142 (269)
.+++|+|+|+|+.|++++..++..|+ +|+++++.+. ..+.++++|.+...+..-..+-
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i 404 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI 404 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence 57899999999999999999999999 8999986542 3445666776544443210001
Q ss_pred cHHHHHHhhhCCCCccEEEEccCC
Q 024295 143 SISELVKGITHGMGVDYCFECTGV 166 (269)
Q Consensus 143 ~~~~~i~~~~~~~~~d~v~d~~g~ 166 (269)
.. +.+. .++|.||.++|.
T Consensus 405 ~~-~~~~-----~~~DavilAtGa 422 (654)
T PRK12769 405 SL-ESLL-----EDYDAVFVGVGT 422 (654)
T ss_pred CH-HHHH-----hcCCEEEEeCCC
Confidence 11 1111 279999999885
No 272
>PRK07814 short chain dehydrogenase; Provisional
Probab=96.45 E-value=0.016 Score=47.47 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=50.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-ee--eCCCCCCCccHHH-HHHhhhC-
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DF--INPDDEPNKSISE-LVKGITH- 153 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~~-~i~~~~~- 153 (269)
+++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.+ .+.. .+ .|..+ .+..+ .+.+...
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAH---PEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC---HHHHHHHHHHHHHH
Confidence 5789999986 8999999998888999 99999998766554322 2321 22 23332 33222 2222211
Q ss_pred CCCccEEEEccCC
Q 024295 154 GMGVDYCFECTGV 166 (269)
Q Consensus 154 ~~~~d~v~d~~g~ 166 (269)
-.++|++++++|.
T Consensus 85 ~~~id~vi~~Ag~ 97 (263)
T PRK07814 85 FGRLDIVVNNVGG 97 (263)
T ss_pred cCCCCEEEECCCC
Confidence 1279999998863
No 273
>PRK12828 short chain dehydrogenase; Provisional
Probab=96.45 E-value=0.021 Score=45.81 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=49.2
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHH-HH---hCCCcee-eCCCCCCCccHHHHHHhhhCC-CC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEK-GK---AFGMTDF-INPDDEPNKSISELVKGITHG-MG 156 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~-~~---~~g~~~v-~~~~~~~~~~~~~~i~~~~~~-~~ 156 (269)
+++++||+|+ |.+|..+++.+...|+ +|+.+++++++... ++ ..+...+ .|..+ ..++.+.+.+.... .+
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~ 82 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVPADALRIGGIDLVD--PQAARRAVDEVNRQFGR 82 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhHHHHHHHHhhcCceEEEeecCC--HHHHHHHHHHHHHHhCC
Confidence 4789999986 9999999988888899 89999987755332 22 2232221 22222 12222222222211 27
Q ss_pred ccEEEEccCC
Q 024295 157 VDYCFECTGV 166 (269)
Q Consensus 157 ~d~v~d~~g~ 166 (269)
+|+++++.+.
T Consensus 83 ~d~vi~~ag~ 92 (239)
T PRK12828 83 LDALVNIAGA 92 (239)
T ss_pred cCEEEECCcc
Confidence 9999998763
No 274
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.42 E-value=0.034 Score=44.74 Aligned_cols=35 Identities=37% Similarity=0.504 Sum_probs=30.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
.+.+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35789999999999999999999999899999854
No 275
>PRK09072 short chain dehydrogenase; Provisional
Probab=96.42 E-value=0.025 Score=46.35 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=50.3
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C--CC-ceee--CCCCCCCccHHHHHHhhhCCCC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F--GM-TDFI--NPDDEPNKSISELVKGITHGMG 156 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~--g~-~~v~--~~~~~~~~~~~~~i~~~~~~~~ 156 (269)
+++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.. + +. .+.+ |-.+ .....+.+........
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTS--EAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHhcCC
Confidence 4678999986 8999999888888899 89999998876655432 2 21 1122 2222 1222222222211237
Q ss_pred ccEEEEccCC
Q 024295 157 VDYCFECTGV 166 (269)
Q Consensus 157 ~d~v~d~~g~ 166 (269)
+|+++.++|.
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 8999998874
No 276
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.41 E-value=0.019 Score=43.81 Aligned_cols=93 Identities=20% Similarity=0.327 Sum_probs=61.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC--ceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295 87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM--TDFINPDDEPNKSISELVKGITHGMGVDYCFEC 163 (269)
Q Consensus 87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 163 (269)
+|.|+|+ |-+|....+=|+..|. .|+++.|++.|....+..-. ..+++.. ...+.+ .++|+|+++
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~~~~~~i~q~Difd~~-----~~a~~l------~g~DaVIsA 69 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGH-EVTAIVRNASKLAARQGVTILQKDIFDLT-----SLASDL------AGHDAVISA 69 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCC-eeEEEEeChHhccccccceeecccccChh-----hhHhhh------cCCceEEEe
Confidence 5789986 9999999999999999 99999999988765422210 1133221 111222 289999999
Q ss_pred cCChh---------HHHHHHHHccc-CCcEEEEEccCC
Q 024295 164 TGVPS---------LLSEALETTKV-GKGKVIVIGVGV 191 (269)
Q Consensus 164 ~g~~~---------~~~~~~~~l~~-~~G~~v~~g~~~ 191 (269)
.+... ..+.++..++. +.-+++.+|...
T Consensus 70 ~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG 107 (211)
T COG2910 70 FGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG 107 (211)
T ss_pred ccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 97641 23345666665 224788887654
No 277
>PRK06180 short chain dehydrogenase; Provisional
Probab=96.41 E-value=0.021 Score=47.26 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=51.9
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC-Cc-e--eeCCCCCCCccHHHHHHhhhCC-CCc
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG-MT-D--FINPDDEPNKSISELVKGITHG-MGV 157 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g-~~-~--v~~~~~~~~~~~~~~i~~~~~~-~~~ 157 (269)
.++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+.. .. . ..|..+ .+...+.+.+.... .++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~~~~ 79 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEALHPDRALARLLDVTD--FDAIDAVVADAEATFGPI 79 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhhcCCCeeEEEccCCC--HHHHHHHHHHHHHHhCCC
Confidence 3578999986 9999999998888899 8999999888776655432 11 1 123322 12233333322111 268
Q ss_pred cEEEEccCC
Q 024295 158 DYCFECTGV 166 (269)
Q Consensus 158 d~v~d~~g~ 166 (269)
|+++++.|.
T Consensus 80 d~vv~~ag~ 88 (277)
T PRK06180 80 DVLVNNAGY 88 (277)
T ss_pred CEEEECCCc
Confidence 999999875
No 278
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.40 E-value=0.022 Score=47.03 Aligned_cols=80 Identities=13% Similarity=0.268 Sum_probs=49.1
Q ss_pred CCCeEEEEcCC---hhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCceee--CCCCCCCccHHHHHHhhhCC
Q 024295 84 KGSSVAVLGLG---TVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTDFI--NPDDEPNKSISELVKGITHG 154 (269)
Q Consensus 84 ~~~~vlI~G~g---~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v~--~~~~~~~~~~~~~i~~~~~~ 154 (269)
+++++||+|++ ++|.+.++.+...|+ +|+.++++++..+.+ ++.|....+ |-.+ .++..+.+.+....
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d--~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVED--IASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCC--HHHHHHHHHHHHHH
Confidence 56889999874 899999988888999 888888765322222 234533222 3222 12233333332211
Q ss_pred -CCccEEEEccCC
Q 024295 155 -MGVDYCFECTGV 166 (269)
Q Consensus 155 -~~~d~v~d~~g~ 166 (269)
..+|++++++|.
T Consensus 83 ~g~iD~lVnnAG~ 95 (271)
T PRK06505 83 WGKLDFVVHAIGF 95 (271)
T ss_pred hCCCCEEEECCcc
Confidence 279999998873
No 279
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.37 E-value=0.016 Score=45.70 Aligned_cols=92 Identities=15% Similarity=0.082 Sum_probs=54.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW-KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE 162 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d 162 (269)
.+++|||+|+|.+|...+..+...|+ +|+++.+... ....+.+.+.- .+.... +.+. .+ .++|+|+-
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~~~~~l~~l~~~~~i-~~~~~~-----~~~~--~l---~~adlVia 76 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPELTENLVKLVEEGKI-RWKQKE-----FEPS--DI---VDAFLVIA 76 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCCHHHHHHHhCCCE-EEEecC-----CChh--hc---CCceEEEE
Confidence 57899999999999998888888898 8888875431 11222122211 111111 1110 11 27899999
Q ss_pred ccCChhHHHHHHHHcccCCcEEEEEcc
Q 024295 163 CTGVPSLLSEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~ 189 (269)
+++.+.. +..+...+.. +.++...+
T Consensus 77 aT~d~el-N~~i~~~a~~-~~lvn~~d 101 (202)
T PRK06718 77 ATNDPRV-NEQVKEDLPE-NALFNVIT 101 (202)
T ss_pred cCCCHHH-HHHHHHHHHh-CCcEEECC
Confidence 9988744 4444433343 55555543
No 280
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.37 E-value=0.043 Score=44.90 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=61.4
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCc---eeeCCCCCCCccHHHHHHhhhCCC
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMT---DFINPDDEPNKSISELVKGITHGM 155 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~~~i~~~~~~~ 155 (269)
.++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++. |.. .++. .+..+ +....+ .
T Consensus 43 ~~~~~vLDiGcG~-G~~a~~la~~-g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~------~d~~~-l~~~~~-~ 111 (255)
T PRK11036 43 PRPLRVLDAGGGE-GQTAIKLAEL-GH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIH------CAAQD-IAQHLE-T 111 (255)
T ss_pred CCCCEEEEeCCCc-hHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEE------cCHHH-HhhhcC-C
Confidence 4567899999886 8888888875 77 999999999888877652 321 1221 12211 212222 3
Q ss_pred CccEEEEcc-----CC-hhHHHHHHHHcccCCcEEEEE
Q 024295 156 GVDYCFECT-----GV-PSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 156 ~~d~v~d~~-----g~-~~~~~~~~~~l~~~~G~~v~~ 187 (269)
.||+|+-.. .. ...+..+.+.+++| |.++.+
T Consensus 112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 148 (255)
T PRK11036 112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPG-GALSLM 148 (255)
T ss_pred CCCEEEehhHHHhhCCHHHHHHHHHHHcCCC-eEEEEE
Confidence 799997432 22 23578899999997 998765
No 281
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.36 E-value=0.084 Score=42.07 Aligned_cols=77 Identities=26% Similarity=0.284 Sum_probs=48.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc----------chHHHHHhCCCceeeCCCCCCCccHHHHHHhhhC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP----------WKKEKGKAFGMTDFINPDDEPNKSISELVKGITH 153 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~----------~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~ 153 (269)
++.+|+|.|.|.+|+.+++++...|.+.|.+.|.+. +..+..++.+....+...+ .-..+.+.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~---~~~~~~l~---- 94 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQD---YFPGEAIL---- 94 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCccc---ccCcccce----
Confidence 689999999999999999999999995556666665 5555555544211111100 00001121
Q ss_pred CCCccEEEEccCCh
Q 024295 154 GMGVDYCFECTGVP 167 (269)
Q Consensus 154 ~~~~d~v~d~~g~~ 167 (269)
..++|+++.|+...
T Consensus 95 ~~~~DVlipaA~~~ 108 (217)
T cd05211 95 GLDVDIFAPCALGN 108 (217)
T ss_pred eccccEEeeccccC
Confidence 12789999888654
No 282
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.36 E-value=0.021 Score=46.43 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=51.4
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCce---eeCCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTD---FINPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~---v~~~~~~~~~~~~~~i~~~~~-~ 154 (269)
+++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.+ .+... ..|..+ ++...+.+.+... -
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQ--HQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence 4789999986 8999999999888999 89999988776654432 23221 223322 2233333332211 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|+++++.|.
T Consensus 85 g~id~lv~~ag~ 96 (253)
T PRK05867 85 GGIDIAVCNAGI 96 (253)
T ss_pred CCCCEEEECCCC
Confidence 279999998863
No 283
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=96.34 E-value=0.059 Score=42.84 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=62.0
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCceee------C-CCCCCCccHHHHHHhhh-
Q 024295 82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDFI------N-PDDEPNKSISELVKGIT- 152 (269)
Q Consensus 82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v~------~-~~~~~~~~~~~~i~~~~- 152 (269)
+.++.+||+.|+|. |.-++.+|. .|. .|++++.++.-.+.+ ++.+..... . +......-....+.++.
T Consensus 32 ~~~~~rvLd~GCG~-G~da~~LA~-~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 32 LPAGARVFVPLCGK-SLDLAWLAE-QGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCCeEEEeCCCc-hhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 35778999999986 888888886 599 999999998877764 223221000 0 00000000000011111
Q ss_pred -CCCCccEEEEccCC--------hhHHHHHHHHcccCCcEEEEEcc
Q 024295 153 -HGMGVDYCFECTGV--------PSLLSEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 153 -~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~ 189 (269)
....||.++|..-- +..++.+.+.|++| |++++++.
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg-G~~ll~~~ 153 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG-ARQLLITL 153 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC-CeEEEEEE
Confidence 01268999996531 22577899999996 98766654
No 284
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.33 E-value=0.078 Score=43.61 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=67.0
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhCC-------Cc--eeeCCCCCCCccHHHH
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAFG-------MT--DFINPDDEPNKSISEL 147 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~g-------~~--~v~~~~~~~~~~~~~~ 147 (269)
....++++++||-+|+|+ |..+..+++..+. .+|+++|.+++..+.+++.. .. .++..+. .++
T Consensus 67 ~~~~~~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~---~~l--- 139 (261)
T PLN02233 67 SWSGAKMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA---TDL--- 139 (261)
T ss_pred HHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc---ccC---
Confidence 345677899999999876 7777788887653 38999999998888876421 11 1111110 110
Q ss_pred HHhhhCCCCccEEEEccC------ChhHHHHHHHHcccCCcEEEEEccCC
Q 024295 148 VKGITHGMGVDYCFECTG------VPSLLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 148 i~~~~~~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
. .++..||.|+-..+ -...+.++.+.|+|| |+++.+....
T Consensus 140 --p-~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG-G~l~i~d~~~ 185 (261)
T PLN02233 140 --P-FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG-SRVSILDFNK 185 (261)
T ss_pred --C-CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcC-cEEEEEECCC
Confidence 0 12237998864321 133588999999997 9998875443
No 285
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.32 E-value=0.049 Score=48.18 Aligned_cols=102 Identities=12% Similarity=0.186 Sum_probs=65.4
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-ee--eCCCCCCCccHHHHHHh
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DF--INPDDEPNKSISELVKG 150 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~~~i~~ 150 (269)
.....+++++||-+|+|+ |..+..+++..+..+|++++.++++.+.+++ +|.. .+ .+.+. ... ..
T Consensus 232 ~~L~~~~g~~VLDlcag~-G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~---~~~----~~ 303 (426)
T TIGR00563 232 TWLAPQNEETILDACAAP-GGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG---RGP----SQ 303 (426)
T ss_pred HHhCCCCCCeEEEeCCCc-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc---ccc----cc
Confidence 445778899999999876 6666677776653399999999988876643 5644 22 22111 111 00
Q ss_pred hhCCCCccEEE-E--ccCC-------------------------hhHHHHHHHHcccCCcEEEEEc
Q 024295 151 ITHGMGVDYCF-E--CTGV-------------------------PSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 151 ~~~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g 188 (269)
+.....||.|| | |+|. ...+..+++.+++| |+++..-
T Consensus 304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg-G~lvyst 368 (426)
T TIGR00563 304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG-GTLVYAT 368 (426)
T ss_pred cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEe
Confidence 11223799887 4 4432 12567788899997 9998764
No 286
>PRK09291 short chain dehydrogenase; Provisional
Probab=96.31 E-value=0.027 Score=45.88 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=48.5
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-ee--eCCCCCCCccHHHHHHhhhCCCC
Q 024295 85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DF--INPDDEPNKSISELVKGITHGMG 156 (269)
Q Consensus 85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~~~i~~~~~~~~ 156 (269)
++++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+++ .+.. .+ .|..+ . +.+.+...+ +
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~---~~~~~~~~~-~ 73 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD---A---IDRAQAAEW-D 73 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCC---H---HHHHHHhcC-C
Confidence 457999986 8999999999999999 99999988765554432 2321 11 23222 2 123332233 7
Q ss_pred ccEEEEccC
Q 024295 157 VDYCFECTG 165 (269)
Q Consensus 157 ~d~v~d~~g 165 (269)
+|++|++.|
T Consensus 74 id~vi~~ag 82 (257)
T PRK09291 74 VDVLLNNAG 82 (257)
T ss_pred CCEEEECCC
Confidence 999999887
No 287
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.30 E-value=0.026 Score=47.75 Aligned_cols=95 Identities=19% Similarity=0.187 Sum_probs=59.5
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295 87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFECT 164 (269)
Q Consensus 87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~ 164 (269)
+|||+|+ |-+|..++..+...|. +|.+++|+.++...+...+.+.+. |..+ +..+.+.+ . ++|+||+++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d--~~~l~~al----~--g~d~Vi~~~ 72 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKEWGAELVYGDLSL--PETLPPSF----K--GVTAIIDAS 72 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhhcCCEEEECCCCC--HHHHHHHH----C--CCCEEEECC
Confidence 6899986 9999999998888898 899999887665555555654333 2222 12222222 2 689999987
Q ss_pred CChh------------HHHHHHHHcccC-CcEEEEEccC
Q 024295 165 GVPS------------LLSEALETTKVG-KGKVIVIGVG 190 (269)
Q Consensus 165 g~~~------------~~~~~~~~l~~~-~G~~v~~g~~ 190 (269)
+... ....+++.++.. -.+++.++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~ 111 (317)
T CHL00194 73 TSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL 111 (317)
T ss_pred CCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 5321 112344544442 1378877653
No 288
>PRK01581 speE spermidine synthase; Validated
Probab=96.29 E-value=0.1 Score=44.66 Aligned_cols=104 Identities=12% Similarity=0.021 Sum_probs=64.7
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC-----ceeeCCCCC--CCccHHHHHHhhhCC
Q 024295 82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM-----TDFINPDDE--PNKSISELVKGITHG 154 (269)
Q Consensus 82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~-----~~v~~~~~~--~~~~~~~~i~~~~~~ 154 (269)
....++|||+|+|. |.++..+++..+.++|++++.+++-.+.++++.. ...++.... -..+..+.+.+ .+
T Consensus 148 h~~PkrVLIIGgGd-G~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-~~- 224 (374)
T PRK01581 148 VIDPKRVLILGGGD-GLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-PS- 224 (374)
T ss_pred CCCCCEEEEECCCH-HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-cC-
Confidence 34457999999764 7778888887666699999999998888886210 000100000 01333344433 23
Q ss_pred CCccEEEEccCC-----------hhHHHHHHHHcccCCcEEEEEcc
Q 024295 155 MGVDYCFECTGV-----------PSLLSEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 155 ~~~d~v~d~~g~-----------~~~~~~~~~~l~~~~G~~v~~g~ 189 (269)
..||+||--... ...+..+.+.|+++ |.++.-..
T Consensus 225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg-GV~V~Qs~ 269 (374)
T PRK01581 225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTED-GAFVCQSN 269 (374)
T ss_pred CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence 379988743221 12467888899996 99877643
No 289
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=96.29 E-value=0.024 Score=42.29 Aligned_cols=99 Identities=22% Similarity=0.266 Sum_probs=63.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCC---CCCccHHHHHHhhhCCCCccEEE
Q 024295 86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDD---EPNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
.+|+|+|. |++|.+.++..|..++ -|..++.++.... ....+++... ..++...+++.+...+.++|.||
T Consensus 4 grVivYGGkGALGSacv~~Fkanny-wV~siDl~eNe~A-----d~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav~ 77 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKANNY-WVLSIDLSENEQA-----DSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAVF 77 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhcCe-EEEEEeecccccc-----cceEEecCCcchhHHHHHHHHHHHHhhcccccceEE
Confidence 57899986 9999999999999999 8888886653322 1223333321 01133444455555677999999
Q ss_pred EccCC----hh----------------------HHHHHHHHcccCCcEEEEEccCC
Q 024295 162 ECTGV----PS----------------------LLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 162 d~~g~----~~----------------------~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
-..|+ .. ....+-..+++| |-+-+.|...
T Consensus 78 CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~G-GLL~LtGAka 132 (236)
T KOG4022|consen 78 CVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPG-GLLQLTGAKA 132 (236)
T ss_pred EeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCC-ceeeeccccc
Confidence 77654 10 123344578896 8888777543
No 290
>PRK07677 short chain dehydrogenase; Provisional
Probab=96.29 E-value=0.023 Score=46.25 Aligned_cols=79 Identities=15% Similarity=0.139 Sum_probs=50.0
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC-ceee--CCCCCCCccHHHHHHhhhC-CC
Q 024295 85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM-TDFI--NPDDEPNKSISELVKGITH-GM 155 (269)
Q Consensus 85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~v~--~~~~~~~~~~~~~i~~~~~-~~ 155 (269)
++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+ .+. ...+ |-.+ ++.+.+.+.+... -.
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRN--PEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHhC
Confidence 468999986 8999999999998999 99999988766554432 222 1222 2222 1233332322211 12
Q ss_pred CccEEEEccCC
Q 024295 156 GVDYCFECTGV 166 (269)
Q Consensus 156 ~~d~v~d~~g~ 166 (269)
++|+++++.|.
T Consensus 78 ~id~lI~~ag~ 88 (252)
T PRK07677 78 RIDALINNAAG 88 (252)
T ss_pred CccEEEECCCC
Confidence 68999998863
No 291
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=96.28 E-value=0.039 Score=44.63 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=50.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhCCCc-ee--eCCCCCCCccHHHHHHhhhC-CCC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW--KKEKGKAFGMT-DF--INPDDEPNKSISELVKGITH-GMG 156 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~--~~~~~~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~ 156 (269)
+++++||+|+ |.+|.+.+..+...|+ +|+.+++++. ..+.+++.+.. .. .|..+ .+++...+.+... -.+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~ 80 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEPSETQQQVEALGRRFLSLTADLSD--IEAIKALVDSAVEEFGH 80 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHHcCC
Confidence 5789999986 8999999888888899 9999987652 12233444422 12 23222 2333333333221 126
Q ss_pred ccEEEEccCC
Q 024295 157 VDYCFECTGV 166 (269)
Q Consensus 157 ~d~v~d~~g~ 166 (269)
+|++++++|.
T Consensus 81 ~d~li~~ag~ 90 (248)
T TIGR01832 81 IDILVNNAGI 90 (248)
T ss_pred CCEEEECCCC
Confidence 9999998864
No 292
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.28 E-value=0.033 Score=45.29 Aligned_cols=35 Identities=29% Similarity=0.404 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
...+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45789999999999999999999999899888754
No 293
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.28 E-value=0.043 Score=47.71 Aligned_cols=101 Identities=20% Similarity=0.185 Sum_probs=67.3
Q ss_pred cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295 80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVD 158 (269)
Q Consensus 80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d 158 (269)
..--.+.++||+|+|-+|..++..+...|.++|++..|+.++... ++++|+. ++..+ ++.+..+ .+|
T Consensus 173 ~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~-~~~l~---------el~~~l~--~~D 240 (414)
T COG0373 173 FGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAE-AVALE---------ELLEALA--EAD 240 (414)
T ss_pred hcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCe-eecHH---------HHHHhhh--hCC
Confidence 333478999999999999999999999998899999999887775 5668844 22221 2222221 789
Q ss_pred EEEEccCChhH---HHHHHHHcccCCc-EEEEEccCCC
Q 024295 159 YCFECTGVPSL---LSEALETTKVGKG-KVIVIGVGVD 192 (269)
Q Consensus 159 ~v~d~~g~~~~---~~~~~~~l~~~~G-~~v~~g~~~~ 192 (269)
+||-+++.+.. -....+.++.... -++.++.|..
T Consensus 241 vVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRd 278 (414)
T COG0373 241 VVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRD 278 (414)
T ss_pred EEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCC
Confidence 99999987642 2233334443223 4566666553
No 294
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.28 E-value=0.055 Score=43.52 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=30.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
...+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 35789999999999999999999999899888744
No 295
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.28 E-value=0.052 Score=45.28 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=55.0
Q ss_pred CeEEEEcCChhHHH-HHHHHHHcCCCeEEEE-cCCcc--hHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295 86 SSVAVLGLGTVGLG-AVDGARMHGAAKIIGI-DKNPW--KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 86 ~~vlI~G~g~~G~~-a~~la~~~g~~~v~~~-~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
-++.|+|+|.+|.. +..+.+.-+. ++.++ +.+++ .++.++++|....+ .++.+.+.. ..-.++|+||
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~v-elvAVvdid~es~gla~A~~~Gi~~~~-------~~ie~LL~~-~~~~dIDiVf 75 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHL-EPGAMVGIDPESDGLARARRLGVATSA-------EGIDGLLAM-PEFDDIDIVF 75 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCc-EEEEEEeCChhhHHHHHHHHcCCCccc-------CCHHHHHhC-cCCCCCCEEE
Confidence 46899999999986 4455554456 55544 44443 34567778754322 223333321 1113799999
Q ss_pred EccCChhHHHHHHHHcccCCcEEEEE
Q 024295 162 ECTGVPSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 162 d~~g~~~~~~~~~~~l~~~~G~~v~~ 187 (269)
++++...+.+.+...... |+.+..
T Consensus 76 ~AT~a~~H~e~a~~a~ea--Gk~VID 99 (302)
T PRK08300 76 DATSAGAHVRHAAKLREA--GIRAID 99 (302)
T ss_pred ECCCHHHHHHHHHHHHHc--CCeEEE
Confidence 999988776666666666 444443
No 296
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.27 E-value=0.1 Score=37.03 Aligned_cols=90 Identities=19% Similarity=0.311 Sum_probs=60.9
Q ss_pred eEEEEcCChhHHHHHHHHHHc--CCCeEE-EEcCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295 87 SVAVLGLGTVGLGAVDGARMH--GAAKII-GIDKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE 162 (269)
Q Consensus 87 ~vlI~G~g~~G~~a~~la~~~--g~~~v~-~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d 162 (269)
++.|+|.|..|..-...++.. +. +++ +.++++++.+. .+++|.. .+ .++.+.+.+ ..+|+|+-
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~-~v~~v~d~~~~~~~~~~~~~~~~-~~-------~~~~~ll~~----~~~D~V~I 68 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDF-EVVAVCDPDPERAEAFAEKYGIP-VY-------TDLEELLAD----EDVDAVII 68 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTE-EEEEEECSSHHHHHHHHHHTTSE-EE-------SSHHHHHHH----TTESEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCc-EEEEEEeCCHHHHHHHHHHhccc-ch-------hHHHHHHHh----hcCCEEEE
Confidence 578999999998877666655 44 555 45666666665 4557766 44 334444432 27999999
Q ss_pred ccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295 163 CTGVPSLLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
++....+...+..++.. |.-+++..+.
T Consensus 69 ~tp~~~h~~~~~~~l~~--g~~v~~EKP~ 95 (120)
T PF01408_consen 69 ATPPSSHAEIAKKALEA--GKHVLVEKPL 95 (120)
T ss_dssp ESSGGGHHHHHHHHHHT--TSEEEEESSS
T ss_pred ecCCcchHHHHHHHHHc--CCEEEEEcCC
Confidence 99888787788888877 5566776443
No 297
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.27 E-value=0.032 Score=45.67 Aligned_cols=80 Identities=14% Similarity=0.224 Sum_probs=48.4
Q ss_pred CCCeEEEEcCC---hhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCceee--CCCCCCCccHHHHHHhhhCC
Q 024295 84 KGSSVAVLGLG---TVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTDFI--NPDDEPNKSISELVKGITHG 154 (269)
Q Consensus 84 ~~~~vlI~G~g---~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v~--~~~~~~~~~~~~~i~~~~~~ 154 (269)
+++++||+|++ ++|.+.++.+...|+ +|+.++++++..+.+ ++++....+ |-.+ .++..+.+.+....
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVRE--PGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCC--HHHHHHHHHHHHHH
Confidence 47889999853 899999988888999 888888875432222 233322222 2222 22333333332211
Q ss_pred -CCccEEEEccCC
Q 024295 155 -MGVDYCFECTGV 166 (269)
Q Consensus 155 -~~~d~v~d~~g~ 166 (269)
..+|++++++|.
T Consensus 86 ~g~ld~lv~nAg~ 98 (258)
T PRK07533 86 WGRLDFLLHSIAF 98 (258)
T ss_pred cCCCCEEEEcCcc
Confidence 279999998863
No 298
>PRK06849 hypothetical protein; Provisional
Probab=96.27 E-value=0.29 Score=42.72 Aligned_cols=95 Identities=14% Similarity=0.021 Sum_probs=59.2
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GMTDFINPDDEPNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
...+|||+|+ .+.|+..+..++..|. +|++++.++.......+. .....+.....+++.+.+.+.++....++|+++
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~-~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vI 81 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGH-TVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLI 81 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3578999997 5689999999999999 999998776443322221 111223222212355778888877666899999
Q ss_pred EccCChhHHHHHHHHccc
Q 024295 162 ECTGVPSLLSEALETTKV 179 (269)
Q Consensus 162 d~~g~~~~~~~~~~~l~~ 179 (269)
-+......+....+.+.+
T Consensus 82 P~~e~~~~~a~~~~~l~~ 99 (389)
T PRK06849 82 PTCEEVFYLSHAKEELSA 99 (389)
T ss_pred ECChHHHhHHhhhhhhcC
Confidence 776532222233344555
No 299
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.26 E-value=0.019 Score=42.05 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=29.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
..+|+|+|+|++|..++..+...|..+++.+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5789999999999999888888899899999853
No 300
>PRK08267 short chain dehydrogenase; Provisional
Probab=96.26 E-value=0.029 Score=45.86 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=51.1
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CC-C-ce--eeCCCCCCCccHHHHHHhhhC--CCCc
Q 024295 86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FG-M-TD--FINPDDEPNKSISELVKGITH--GMGV 157 (269)
Q Consensus 86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g-~-~~--v~~~~~~~~~~~~~~i~~~~~--~~~~ 157 (269)
+++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+.+ .+ . .+ ..|-.+ ..++.+.+.+... ..++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGAGNAWTGALDVTD--RAAWDAALADFAAATGGRL 78 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHcCCCC
Confidence 47999986 8999999998888899 99999998877666543 22 1 11 223332 1333333333211 2379
Q ss_pred cEEEEccCC
Q 024295 158 DYCFECTGV 166 (269)
Q Consensus 158 d~v~d~~g~ 166 (269)
|+++.++|.
T Consensus 79 d~vi~~ag~ 87 (260)
T PRK08267 79 DVLFNNAGI 87 (260)
T ss_pred CEEEECCCC
Confidence 999999874
No 301
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.25 E-value=0.031 Score=47.70 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=31.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP 119 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~ 119 (269)
.+.+|+|+|+|++|..++..+...|..+++.+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 457899999999999999999999998999898753
No 302
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.25 E-value=0.038 Score=45.06 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=50.4
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce-ee--CCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD-FI--NPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-~ 154 (269)
+++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+ ++.+... .+ |..+ ...+.+.+.+... -
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTN--EDAVNAGIDKVAERF 82 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence 4688999986 9999999999999999 899999887655433 2334332 11 2222 1222222222211 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|+++.+.|.
T Consensus 83 ~~~d~vi~~ag~ 94 (262)
T PRK13394 83 GSVDILVSNAGI 94 (262)
T ss_pred CCCCEEEECCcc
Confidence 268999998864
No 303
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=96.25 E-value=0.049 Score=44.96 Aligned_cols=130 Identities=21% Similarity=0.275 Sum_probs=83.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCC--------CCccHHHHHHhhh-
Q 024295 82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDE--------PNKSISELVKGIT- 152 (269)
Q Consensus 82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~--------~~~~~~~~i~~~~- 152 (269)
..+..++|+.|.|..|++++..++..|+ .|...+..+.+.+..+.+|+...--.++. -.++|...-.++.
T Consensus 161 tv~pA~vlv~G~Gvagl~aiata~~lG~-iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a 239 (356)
T COG3288 161 TVSPAKVLVIGAGVAGLAAIATAVRLGA-IVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVA 239 (356)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhhcce-EEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHH
Confidence 3456788999999999999999999999 99998888888777777775432211110 0122322222221
Q ss_pred C-CCCccEEEEcc---CChh---HHHHHHHHcccCCcEEEEEccCCC--ccccchhHhhhhCCceEEeee
Q 024295 153 H-GMGVDYCFECT---GVPS---LLSEALETTKVGKGKVIVIGVGVD--AMVPLNVIALACGGRTLKGTT 213 (269)
Q Consensus 153 ~-~~~~d~v~d~~---g~~~---~~~~~~~~l~~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~ 213 (269)
. -.++|+||-+. |.+. ...++...+++| ..+|.+....+ .....+-.-...++.+++|..
T Consensus 240 ~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpG-SViVDlAa~~GGNce~t~pg~~v~~~gV~iig~~ 308 (356)
T COG3288 240 EQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPG-SVIVDLAAETGGNCELTEPGKVVTKNGVKIIGYT 308 (356)
T ss_pred HHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCC-cEEEEehhhcCCCcccccCCeEEEeCCeEEEeec
Confidence 1 13899999876 3322 256888999997 99999875544 222222222334677887754
No 304
>PRK07478 short chain dehydrogenase; Provisional
Probab=96.24 E-value=0.03 Score=45.59 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=51.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce-ee--CCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD-FI--NPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-~ 154 (269)
+++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+. +.+... .+ |..+ ++...+.+.+... -
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRD--EAYAKALVALAVERF 81 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHhc
Confidence 4678999986 8999999988888999 8999999877665442 233221 22 3222 1222222332221 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
..+|++++++|.
T Consensus 82 ~~id~li~~ag~ 93 (254)
T PRK07478 82 GGLDIAFNNAGT 93 (254)
T ss_pred CCCCEEEECCCC
Confidence 279999998873
No 305
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=96.24 E-value=0.04 Score=43.99 Aligned_cols=105 Identities=21% Similarity=0.166 Sum_probs=62.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc-------------------chHHHHHh----CCCceeeCCCCCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP-------------------WKKEKGKA----FGMTDFINPDDEP 140 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~-------------------~~~~~~~~----~g~~~v~~~~~~~ 140 (269)
+.++|+|+|.|++|..++..+...|..++..+|.+. .|.+.+++ ..+.--++..+
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~-- 106 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIN-- 106 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehH--
Confidence 468899999999999999999999998888887432 11111111 11111111111
Q ss_pred CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHH-HcccCCcEEEEEccCCC
Q 024295 141 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALE-TTKVGKGKVIVIGVGVD 192 (269)
Q Consensus 141 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~-~l~~~~G~~v~~g~~~~ 192 (269)
+.-..+.+.++... ++|+|+||...-..--.++. +.+.+ =.++..+...+
T Consensus 107 ~f~t~en~~~~~~~-~~DyvIDaiD~v~~Kv~Li~~c~~~k-i~vIss~Gag~ 157 (263)
T COG1179 107 DFITEENLEDLLSK-GFDYVIDAIDSVRAKVALIAYCRRNK-IPVISSMGAGG 157 (263)
T ss_pred hhhCHhHHHHHhcC-CCCEEEEchhhhHHHHHHHHHHHHcC-CCEEeeccccC
Confidence 02223344455555 99999999976544334444 44453 56777765443
No 306
>PLN03139 formate dehydrogenase; Provisional
Probab=96.23 E-value=0.06 Score=46.75 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=56.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC 163 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 163 (269)
.|++|.|+|.|.+|...++.++..|. +|++.+++....+..++.|+... .++.+.+. ..|+|+-+
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g~~~~--------~~l~ell~------~sDvV~l~ 262 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETGAKFE--------EDLDAMLP------KCDVVVIN 262 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcCceec--------CCHHHHHh------hCCEEEEe
Confidence 57899999999999999999999999 99999877544444444443211 12322221 45777665
Q ss_pred cCChhH-----HHHHHHHcccCCcEEEEEcc
Q 024295 164 TGVPSL-----LSEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 164 ~g~~~~-----~~~~~~~l~~~~G~~v~~g~ 189 (269)
+..... -...+..++++ ..+|.++.
T Consensus 263 lPlt~~T~~li~~~~l~~mk~g-a~lIN~aR 292 (386)
T PLN03139 263 TPLTEKTRGMFNKERIAKMKKG-VLIVNNAR 292 (386)
T ss_pred CCCCHHHHHHhCHHHHhhCCCC-eEEEECCC
Confidence 543221 12445566664 66666653
No 307
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.22 E-value=0.03 Score=45.27 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=50.5
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-ee--eCCCCCCCccHHHH-HHhhhCC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-DF--INPDDEPNKSISEL-VKGITHG 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--~~~~~~~~~~~~~~-i~~~~~~ 154 (269)
+++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+. ..+.. .+ .|-.+ .+..+. +.+....
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~---~~~~~~~~~~~~~~ 81 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLAD---PASVQRFFDAAAAA 81 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC---HHHHHHHHHHHHHH
Confidence 4688999986 9999999998888999 8999988877555432 22322 12 23322 222222 2222111
Q ss_pred -CCccEEEEccCC
Q 024295 155 -MGVDYCFECTGV 166 (269)
Q Consensus 155 -~~~d~v~d~~g~ 166 (269)
.++|+++.++|.
T Consensus 82 ~~~id~vi~~ag~ 94 (250)
T PRK12939 82 LGGLDGLVNNAGI 94 (250)
T ss_pred cCCCCEEEECCCC
Confidence 279999999874
No 308
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.21 E-value=0.052 Score=40.14 Aligned_cols=32 Identities=31% Similarity=0.378 Sum_probs=28.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
+|+|+|+|++|...++.+...|.++++.+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 48999999999999999999999889999754
No 309
>PRK05884 short chain dehydrogenase; Provisional
Probab=96.21 E-value=0.041 Score=43.99 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=48.5
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCcee-eCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295 87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCFEC 163 (269)
Q Consensus 87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 163 (269)
+++|+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+ ++++...+ .|-.+ +.++.+.+.+. .+ .+|+++++
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~-~~-~id~lv~~ 76 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKELDVDAIVCDNTD--PASLEEARGLF-PH-HLDTIVNV 76 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCcEEecCCCC--HHHHHHHHHHH-hh-cCcEEEEC
Confidence 4899986 8999999998888899 999999888776654 33444322 23332 12233333332 22 68999987
Q ss_pred cC
Q 024295 164 TG 165 (269)
Q Consensus 164 ~g 165 (269)
.|
T Consensus 77 ag 78 (223)
T PRK05884 77 PA 78 (223)
T ss_pred CC
Confidence 64
No 310
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.21 E-value=0.053 Score=47.11 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=31.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
.+.+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56789999999999999999999999899999876
No 311
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.21 E-value=0.036 Score=44.94 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=30.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
++.+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 35789999999999999999999999899888754
No 312
>PRK07024 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.03 Score=45.68 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=49.8
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCC--c-ee--eCCCCCCCccHHHHHHhhhC-CCC
Q 024295 85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGM--T-DF--INPDDEPNKSISELVKGITH-GMG 156 (269)
Q Consensus 85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~--~-~v--~~~~~~~~~~~~~~i~~~~~-~~~ 156 (269)
..++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+.+ +.. . .. .|-.+ .+.+.+.+.+... ...
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~~g~ 78 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRD--ADALAAAAADFIAAHGL 78 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCC--HHHHHHHHHHHHHhCCC
Confidence 368999986 8999999888888899 99999998877655433 221 1 11 22222 1233333333221 125
Q ss_pred ccEEEEccCC
Q 024295 157 VDYCFECTGV 166 (269)
Q Consensus 157 ~d~v~d~~g~ 166 (269)
+|++++++|.
T Consensus 79 id~lv~~ag~ 88 (257)
T PRK07024 79 PDVVIANAGI 88 (257)
T ss_pred CCEEEECCCc
Confidence 8999998863
No 313
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.20 E-value=0.038 Score=43.89 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
+..+|+|+|+|++|...++.+...|..+++.+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45789999999999999999999999889999866
No 314
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.18 E-value=0.11 Score=41.08 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=59.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295 82 VEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC 160 (269)
Q Consensus 82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v 160 (269)
++++.+||-+|+|+ |..+..+++..+. .+|+++|.++. .......++..+- ......+++.+..+...+|+|
T Consensus 49 ~~~~~~VLDlG~Gt-G~~t~~l~~~~~~~~~V~aVDi~~~-----~~~~~v~~i~~D~-~~~~~~~~i~~~~~~~~~D~V 121 (209)
T PRK11188 49 FKPGMTVVDLGAAP-GGWSQYAVTQIGDKGRVIACDILPM-----DPIVGVDFLQGDF-RDELVLKALLERVGDSKVQVV 121 (209)
T ss_pred CCCCCEEEEEcccC-CHHHHHHHHHcCCCceEEEEecccc-----cCCCCcEEEecCC-CChHHHHHHHHHhCCCCCCEE
Confidence 57889999999877 7777777777653 38999998761 1111122332221 112223444443334489999
Q ss_pred EEcc-----CCh------------hHHHHHHHHcccCCcEEEEE
Q 024295 161 FECT-----GVP------------SLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 161 ~d~~-----g~~------------~~~~~~~~~l~~~~G~~v~~ 187 (269)
+-.. |.+ ..++.+.+.|++| |+++..
T Consensus 122 ~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG-G~~vi~ 164 (209)
T PRK11188 122 MSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG-GSFVVK 164 (209)
T ss_pred ecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEE
Confidence 8532 221 2467888899997 998774
No 315
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.18 E-value=0.083 Score=45.10 Aligned_cols=88 Identities=17% Similarity=0.293 Sum_probs=54.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC 163 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 163 (269)
.|++|.|+|.|.+|...++.++..|. +|++.+++.+.. ...+.+... .++.+.+. ..|+|+-+
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~-~~~~~~~~~---------~~l~ell~------~aDiV~l~ 211 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKPE-AEKELGAEY---------RPLEELLR------ESDFVSLH 211 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCChh-hHHHcCCEe---------cCHHHHHh------hCCEEEEe
Confidence 57899999999999999999999999 999999875432 223333211 11222221 45677666
Q ss_pred cCChhH-----HHHHHHHcccCCcEEEEEcc
Q 024295 164 TGVPSL-----LSEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 164 ~g~~~~-----~~~~~~~l~~~~G~~v~~g~ 189 (269)
+...+. -...+..++++ ..++.++.
T Consensus 212 lP~t~~T~~~i~~~~~~~mk~g-a~lIN~aR 241 (333)
T PRK13243 212 VPLTKETYHMINEERLKLMKPT-AILVNTAR 241 (333)
T ss_pred CCCChHHhhccCHHHHhcCCCC-eEEEECcC
Confidence 643221 12445566664 66666553
No 316
>PRK06128 oxidoreductase; Provisional
Probab=96.18 E-value=0.071 Score=44.69 Aligned_cols=80 Identities=18% Similarity=0.126 Sum_probs=47.1
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch--H----HHHHhCCCce-ee--CCCCCCCccHHHHHHhhhC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK--K----EKGKAFGMTD-FI--NPDDEPNKSISELVKGITH 153 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~--~----~~~~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~ 153 (269)
.++++||+|+ |.+|.+.+..+...|+ +|+.+.++.+. . +.++..+... .+ |-.+ .....+.+.+...
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~ 130 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKD--EAFCRQLVERAVK 130 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHHHHH
Confidence 4689999986 8999999988888899 88777654321 1 1223344322 22 2222 1222222322211
Q ss_pred -CCCccEEEEccCC
Q 024295 154 -GMGVDYCFECTGV 166 (269)
Q Consensus 154 -~~~~d~v~d~~g~ 166 (269)
-.++|++++++|.
T Consensus 131 ~~g~iD~lV~nAg~ 144 (300)
T PRK06128 131 ELGGLDILVNIAGK 144 (300)
T ss_pred HhCCCCEEEECCcc
Confidence 1279999998873
No 317
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.18 E-value=0.05 Score=44.97 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=48.0
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCC---CceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFG---MTDFINPDDEPNKSISELVKGITHGMGVD 158 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g---~~~v~~~~~~~~~~~~~~i~~~~~~~~~d 158 (269)
.++++++|+|+|++|.+++..+...|. +|+++++++++.+.+ +++. ........ + .. ...+|
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~--------~----~~-~~~~D 180 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEELAERFQRYGEIQAFSMD--------E----LP-LHRVD 180 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhcCceEEechh--------h----hc-ccCcc
Confidence 457899999999999999888888898 999999987766544 3332 11121111 1 11 12689
Q ss_pred EEEEccCC
Q 024295 159 YCFECTGV 166 (269)
Q Consensus 159 ~v~d~~g~ 166 (269)
++++|++.
T Consensus 181 ivInatp~ 188 (270)
T TIGR00507 181 LIINATSA 188 (270)
T ss_pred EEEECCCC
Confidence 99999965
No 318
>PRK08328 hypothetical protein; Provisional
Probab=96.17 E-value=0.026 Score=45.47 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=30.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
.+.+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45789999999999999999999999899998754
No 319
>PRK08862 short chain dehydrogenase; Provisional
Probab=96.16 E-value=0.038 Score=44.40 Aligned_cols=79 Identities=16% Similarity=0.085 Sum_probs=50.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce-e--eCCCCCCCccHHHHHHhhhC--
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD-F--INPDDEPNKSISELVKGITH-- 153 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-- 153 (269)
++++++|+|+ +++|.+.+.-+...|+ +|+.+++++++.+.+ ++.+.+. . .|..+ +++..+.+.+...
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFS--QESIRHLFDAIEQQF 80 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCC--HHHHHHHHHHHHHHh
Confidence 4688999986 7899998888888899 899999888766543 2334321 2 23222 2333333333222
Q ss_pred CCCccEEEEccC
Q 024295 154 GMGVDYCFECTG 165 (269)
Q Consensus 154 ~~~~d~v~d~~g 165 (269)
+..+|+++++.|
T Consensus 81 g~~iD~li~nag 92 (227)
T PRK08862 81 NRAPDVLVNNWT 92 (227)
T ss_pred CCCCCEEEECCc
Confidence 126999999986
No 320
>PRK06198 short chain dehydrogenase; Provisional
Probab=96.16 E-value=0.039 Score=45.04 Aligned_cols=81 Identities=20% Similarity=0.185 Sum_probs=50.6
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHH----HHhCCCce---eeCCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEK----GKAFGMTD---FINPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~----~~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~ 154 (269)
++++++|+|+ |.+|...++.+...|++.|+.+++++++... ++..+... ..|..+ ++.+.+.+..... -
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSD--VEDCRRVVAAADEAF 82 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence 5688999986 8999999999988999449999987655442 23334321 223332 1222222222211 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|+++++.|.
T Consensus 83 g~id~li~~ag~ 94 (260)
T PRK06198 83 GRLDALVNAAGL 94 (260)
T ss_pred CCCCEEEECCCc
Confidence 269999999874
No 321
>PRK07062 short chain dehydrogenase; Provisional
Probab=96.15 E-value=0.031 Score=45.79 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=50.9
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----CCC-c---eeeCCCCCCCccHHHHHHhhhC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-----FGM-T---DFINPDDEPNKSISELVKGITH 153 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-----~g~-~---~v~~~~~~~~~~~~~~i~~~~~ 153 (269)
+++++||+|+ +.+|.+.++.+...|+ +|+.+++++++.+.+.+ .+. . ...|-.+ .+...+.+.+...
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~ 83 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLD--EADVAAFAAAVEA 83 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC--HHHHHHHHHHHHH
Confidence 4788999986 8999999999988999 89999998876654322 111 1 1123332 1223222322221
Q ss_pred -CCCccEEEEccCC
Q 024295 154 -GMGVDYCFECTGV 166 (269)
Q Consensus 154 -~~~~d~v~d~~g~ 166 (269)
-..+|++++++|.
T Consensus 84 ~~g~id~li~~Ag~ 97 (265)
T PRK07062 84 RFGGVDMLVNNAGQ 97 (265)
T ss_pred hcCCCCEEEECCCC
Confidence 1269999999874
No 322
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.15 E-value=0.045 Score=44.02 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=50.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce-e--eCCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD-F--INPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~ 154 (269)
++.++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+ +..+... + .|..+ +..+.+.+.+... -
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~ 80 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSD--EAAVRALIEAAVEAF 80 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHh
Confidence 3578999986 9999999988888899 799999987765443 2334322 2 23322 2223333333211 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|.++.++|.
T Consensus 81 ~~id~vi~~ag~ 92 (246)
T PRK05653 81 GALDILVNNAGI 92 (246)
T ss_pred CCCCEEEECCCc
Confidence 268999998854
No 323
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.14 E-value=0.3 Score=39.81 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=63.4
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC-ceeeCCCCCCCccHHHHHHhhhCCCC
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM-TDFINPDDEPNKSISELVKGITHGMG 156 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~ 156 (269)
......+..+||-+|+|+ |..+..+++ .|. +++++|.+++..+.+++... ..++.. +..+ + .. .+..
T Consensus 36 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~~D~s~~~l~~a~~~~~~~~~~~~------d~~~-~-~~-~~~~ 103 (251)
T PRK10258 36 AMLPQRKFTHVLDAGCGP-GWMSRYWRE-RGS-QVTALDLSPPMLAQARQKDAADHYLAG------DIES-L-PL-ATAT 103 (251)
T ss_pred HhcCccCCCeEEEeeCCC-CHHHHHHHH-cCC-eEEEEECCHHHHHHHHhhCCCCCEEEc------Cccc-C-cC-CCCc
Confidence 333444678899999886 766666655 466 99999999998888877532 222211 1110 0 11 2237
Q ss_pred ccEEEEccC------ChhHHHHHHHHcccCCcEEEEEcc
Q 024295 157 VDYCFECTG------VPSLLSEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 157 ~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~ 189 (269)
||+|+.... ....+.++.+.+++| |.++....
T Consensus 104 fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~g-G~l~~~~~ 141 (251)
T PRK10258 104 FDLAWSNLAVQWCGNLSTALRELYRVVRPG-GVVAFTTL 141 (251)
T ss_pred EEEEEECchhhhcCCHHHHHHHHHHHcCCC-eEEEEEeC
Confidence 999986432 123578889999996 99887643
No 324
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=96.14 E-value=0.0033 Score=50.71 Aligned_cols=102 Identities=22% Similarity=0.281 Sum_probs=62.5
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCC---ceeeCCCCCCCccHHHHHH
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGM---TDFINPDDEPNKSISELVK 149 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~---~~v~~~~~~~~~~~~~~i~ 149 (269)
+....+++.+||-+|+|+ |..+..+++..+. .+|+++|-+++-++.+++ .+. +.+.... .++.
T Consensus 41 ~~~~~~~g~~vLDv~~Gt-G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da----~~lp---- 111 (233)
T PF01209_consen 41 KLLGLRPGDRVLDVACGT-GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA----EDLP---- 111 (233)
T ss_dssp HHHT--S--EEEEET-TT-SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT----TB------
T ss_pred hccCCCCCCEEEEeCCCh-HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH----HHhc----
Confidence 345678899999999886 8888889988764 389999999988888765 222 2222111 1111
Q ss_pred hhhCCCCccEEEEccCC------hhHHHHHHHHcccCCcEEEEEccCC
Q 024295 150 GITHGMGVDYCFECTGV------PSLLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 150 ~~~~~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
. ++..||+|.-+.|- ...+.++.+.|+|| |+++.+....
T Consensus 112 -~-~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPG-G~l~ile~~~ 156 (233)
T PF01209_consen 112 -F-PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPG-GRLVILEFSK 156 (233)
T ss_dssp -S--TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEE-EEEEEEEEEB
T ss_pred -C-CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCC-eEEEEeeccC
Confidence 1 22379999865543 33688999999997 9988776544
No 325
>PRK08264 short chain dehydrogenase; Validated
Probab=96.12 E-value=0.043 Score=44.11 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=48.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc-ee--eCCCCCCCccHHHHHHhhhCCCCccE
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT-DF--INPDDEPNKSISELVKGITHGMGVDY 159 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~~~~~d~ 159 (269)
.++++||+|+ |.+|...++.+...|+++|+.+++++++.+. .+.. .+ .|..+ .+-.+.+.+.. ..+|+
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~---~~~~~~~~~~~--~~id~ 76 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQLDVTD---PASVAAAAEAA--SDVTI 76 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEecCCC---HHHHHHHHHhc--CCCCE
Confidence 4678999985 9999999998888898789999988765543 2221 12 22222 22222222222 26899
Q ss_pred EEEccCC
Q 024295 160 CFECTGV 166 (269)
Q Consensus 160 v~d~~g~ 166 (269)
++.+.|.
T Consensus 77 vi~~ag~ 83 (238)
T PRK08264 77 LVNNAGI 83 (238)
T ss_pred EEECCCc
Confidence 9998876
No 326
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.11 E-value=0.091 Score=35.74 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=50.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcC---CCeEEEE-cCCcchHHHHH-hCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295 87 SVAVLGLGTVGLGAVDGARMHG---AAKIIGI-DKNPWKKEKGK-AFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 87 ~vlI~G~g~~G~~a~~la~~~g---~~~v~~~-~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
+|.|+|+|.+|.+.+.-+...| . +|+.+ ++++++.+.+. +++..... .+..+.+. ..|+||
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~~~~~-------~~~~~~~~------~advvi 66 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGVQATA-------DDNEEAAQ------EADVVI 66 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTTEEES-------EEHHHHHH------HTSEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhcccccc-------CChHHhhc------cCCEEE
Confidence 5778899999999998888888 5 78844 89998888774 46644322 23333443 569999
Q ss_pred EccCChhHHHHHHHHc
Q 024295 162 ECTGVPSLLSEALETT 177 (269)
Q Consensus 162 d~~g~~~~~~~~~~~l 177 (269)
-|+... .+.+.++.+
T Consensus 67 lav~p~-~~~~v~~~i 81 (96)
T PF03807_consen 67 LAVKPQ-QLPEVLSEI 81 (96)
T ss_dssp E-S-GG-GHHHHHHHH
T ss_pred EEECHH-HHHHHHHHH
Confidence 999654 445555544
No 327
>PRK08703 short chain dehydrogenase; Provisional
Probab=96.10 E-value=0.044 Score=44.11 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=34.5
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG 125 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~ 125 (269)
++++++|+|+ |.+|...++.+...|+ +|+++++++++.+.+
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~ 46 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKV 46 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHH
Confidence 4678999986 8999999988888899 899999988766544
No 328
>PTZ00146 fibrillarin; Provisional
Probab=96.10 E-value=0.1 Score=43.38 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=61.8
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHH----HHhC-CCceeeCCCCCCCccHHHHHHhh
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEK----GKAF-GMTDFINPDDEPNKSISELVKGI 151 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~----~~~~-g~~~v~~~~~~~~~~~~~~i~~~ 151 (269)
....++++++||-+|+|+ |..+..++...+. ..|++++.+++..+. +++. +...++.... ........
T Consensus 126 ~~l~IkpG~~VLDLGaG~-G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~-----~p~~y~~~ 199 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAAS-GTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDAR-----YPQKYRML 199 (293)
T ss_pred ceeccCCCCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCcc-----Chhhhhcc
Confidence 445789999999999876 8888888888864 389999987543322 2222 2233322111 11112211
Q ss_pred hCCCCccEEEEccCChh----HHHHHHHHcccCCcEEEEE
Q 024295 152 THGMGVDYCFECTGVPS----LLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 152 ~~~~~~d~v~d~~g~~~----~~~~~~~~l~~~~G~~v~~ 187 (269)
. + .+|+||-.+..+. ....+.+.|+++ |+++..
T Consensus 200 ~-~-~vDvV~~Dva~pdq~~il~~na~r~LKpG-G~~vI~ 236 (293)
T PTZ00146 200 V-P-MVDVIFADVAQPDQARIVALNAQYFLKNG-GHFIIS 236 (293)
T ss_pred c-C-CCCEEEEeCCCcchHHHHHHHHHHhccCC-CEEEEE
Confidence 1 2 6999986554432 234567799996 998873
No 329
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.09 E-value=0.049 Score=45.98 Aligned_cols=89 Identities=13% Similarity=0.204 Sum_probs=56.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC 163 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 163 (269)
.+++|.|+|.|.+|...++.++..|. +|++.+++.++.. +....... .++.+.+. ..|+|+.+
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~~~-----~~~~~~~~-----~~l~e~l~------~aDvvv~~ 197 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKSWP-----GVQSFAGR-----EELSAFLS------QTRVLINL 197 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCCCC-----Cceeeccc-----ccHHHHHh------cCCEEEEC
Confidence 57899999999999999999999999 9999987543321 11111111 22332222 56777777
Q ss_pred cCChhH-----HHHHHHHcccCCcEEEEEccC
Q 024295 164 TGVPSL-----LSEALETTKVGKGKVIVIGVG 190 (269)
Q Consensus 164 ~g~~~~-----~~~~~~~l~~~~G~~v~~g~~ 190 (269)
....+. -...+..++++ ..+|.+|..
T Consensus 198 lPlt~~T~~li~~~~l~~mk~g-a~lIN~aRG 228 (312)
T PRK15469 198 LPNTPETVGIINQQLLEQLPDG-AYLLNLARG 228 (312)
T ss_pred CCCCHHHHHHhHHHHHhcCCCC-cEEEECCCc
Confidence 753222 12456677775 777777643
No 330
>PRK07576 short chain dehydrogenase; Provisional
Probab=96.09 E-value=0.041 Score=45.20 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=50.4
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-e--eeCCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-D--FINPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~--v~~~~~~~~~~~~~~i~~~~~-~ 154 (269)
+++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.. .+.+.. . .+|..+ +.+....+.+... .
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRD--YAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCC--HHHHHHHHHHHHHHc
Confidence 5789999986 8999999998888999 899999887655433 222322 1 123322 1223333333321 1
Q ss_pred CCccEEEEccC
Q 024295 155 MGVDYCFECTG 165 (269)
Q Consensus 155 ~~~d~v~d~~g 165 (269)
.++|+++.+.|
T Consensus 85 ~~iD~vi~~ag 95 (264)
T PRK07576 85 GPIDVLVSGAA 95 (264)
T ss_pred CCCCEEEECCC
Confidence 27899998775
No 331
>PLN02823 spermine synthase
Probab=96.09 E-value=0.061 Score=45.83 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=62.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CCc-eeeC-CCC-CCCccHHHHHHhhhCCCCccE
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GMT-DFIN-PDD-EPNKSISELVKGITHGMGVDY 159 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~~-~v~~-~~~-~~~~~~~~~i~~~~~~~~~d~ 159 (269)
..++|||+|+|. |.++..+++..+.++|++++.+++-.+.++++ +.. ..++ .+- --..|..+.+++ .+ ..+|+
T Consensus 103 ~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-~~-~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-RD-EKFDV 179 (336)
T ss_pred CCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-CC-CCccE
Confidence 457899999875 66777888877777999999999999988873 211 1111 110 001333334433 23 38998
Q ss_pred EE-EccC----Ch-------hHHH-HHHHHcccCCcEEEEE
Q 024295 160 CF-ECTG----VP-------SLLS-EALETTKVGKGKVIVI 187 (269)
Q Consensus 160 v~-d~~g----~~-------~~~~-~~~~~l~~~~G~~v~~ 187 (269)
|| |... ++ ..++ .+.+.|+++ |.++.-
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~-Gvlv~q 219 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPG-GIFVTQ 219 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCC-cEEEEe
Confidence 86 5332 11 1344 678899996 988764
No 332
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=96.08 E-value=0.043 Score=44.85 Aligned_cols=77 Identities=21% Similarity=0.228 Sum_probs=48.7
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCceee--CCCCCCCccHHHHHHhhhC-CCCcc
Q 024295 87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTDFI--NPDDEPNKSISELVKGITH-GMGVD 158 (269)
Q Consensus 87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v~--~~~~~~~~~~~~~i~~~~~-~~~~d 158 (269)
++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +.+..+.+ |-.+ .++..+.+.+... -.++|
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d--~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYGEVYAVKADLSD--KDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCC--HHHHHHHHHHHHHhcCCCC
Confidence 5899986 8999999888888899 8999998876654432 22322222 2222 2233333333221 12799
Q ss_pred EEEEccCC
Q 024295 159 YCFECTGV 166 (269)
Q Consensus 159 ~v~d~~g~ 166 (269)
+++++.|.
T Consensus 79 ~li~naG~ 86 (259)
T PRK08340 79 ALVWNAGN 86 (259)
T ss_pred EEEECCCC
Confidence 99998874
No 333
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=96.07 E-value=0.037 Score=46.67 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=60.8
Q ss_pred HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHH---HHHhC-CC---ceeeCCCCCCCccHHHHH
Q 024295 76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKE---KGKAF-GM---TDFINPDDEPNKSISELV 148 (269)
Q Consensus 76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~---~~~~~-g~---~~v~~~~~~~~~~~~~~i 148 (269)
+.......++++||-+|+|. |..+..+++. |+..|++++.++.... .++.+ +. .++.. .++
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~-G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~------~~i---- 180 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGS-GYHMWRMLGH-GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEP------LGI---- 180 (314)
T ss_pred HHHhcCCCCCCEEEEeccCC-cHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEE------CCH----
Confidence 33444566789999999987 7777666654 6658999998875433 23332 21 12221 111
Q ss_pred HhhhCCCCccEEEEcc-----CC-hhHHHHHHHHcccCCcEEEEE
Q 024295 149 KGITHGMGVDYCFECT-----GV-PSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 149 ~~~~~~~~~d~v~d~~-----g~-~~~~~~~~~~l~~~~G~~v~~ 187 (269)
.++.....||+|+-.- .. ...+.++.+.|++| |++++-
T Consensus 181 e~lp~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpG-G~Lvle 224 (314)
T TIGR00452 181 EQLHELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIK-GELVLE 224 (314)
T ss_pred HHCCCCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCC-CEEEEE
Confidence 1222223799997431 12 24688899999997 999864
No 334
>PRK06125 short chain dehydrogenase; Provisional
Probab=96.07 E-value=0.054 Score=44.24 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=50.1
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----CCCc-eee--CCCCCCCccHHHHHHhhhCC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-----FGMT-DFI--NPDDEPNKSISELVKGITHG 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-----~g~~-~v~--~~~~~~~~~~~~~i~~~~~~ 154 (269)
+++++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+ .+.. ..+ |-.+ ..+..+.+.. . +
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~-~-g 80 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSS--PEAREQLAAE-A-G 80 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC--HHHHHHHHHH-h-C
Confidence 4689999986 8999999988888899 99999988776655322 1221 222 2222 1222222222 2 2
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.+|+++++.|.
T Consensus 81 -~id~lv~~ag~ 91 (259)
T PRK06125 81 -DIDILVNNAGA 91 (259)
T ss_pred -CCCEEEECCCC
Confidence 79999998864
No 335
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=96.06 E-value=0.049 Score=46.43 Aligned_cols=99 Identities=19% Similarity=0.200 Sum_probs=63.2
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE 162 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d 162 (269)
.++.+||-+|+|. |..+..+++..+..+++++|.+++..+.+++.....-+.... .+..+ + .. ....||+|+-
T Consensus 112 ~~~~~VLDLGcGt-G~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~---gD~e~-l-p~-~~~sFDvVIs 184 (340)
T PLN02490 112 DRNLKVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIE---GDAED-L-PF-PTDYADRYVS 184 (340)
T ss_pred CCCCEEEEEecCC-cHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEe---ccHHh-C-CC-CCCceeEEEE
Confidence 4678999999876 777778888765459999999988777776642111011111 22211 1 11 2236998875
Q ss_pred cc-----C-ChhHHHHHHHHcccCCcEEEEEcc
Q 024295 163 CT-----G-VPSLLSEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 163 ~~-----g-~~~~~~~~~~~l~~~~G~~v~~g~ 189 (269)
+- . ....++++.+.|++| |+++..+.
T Consensus 185 ~~~L~~~~d~~~~L~e~~rvLkPG-G~LvIi~~ 216 (340)
T PLN02490 185 AGSIEYWPDPQRGIKEAYRVLKIG-GKACLIGP 216 (340)
T ss_pred cChhhhCCCHHHHHHHHHHhcCCC-cEEEEEEe
Confidence 32 1 123578899999997 99987753
No 336
>PRK07454 short chain dehydrogenase; Provisional
Probab=96.06 E-value=0.047 Score=44.00 Aligned_cols=80 Identities=13% Similarity=0.072 Sum_probs=50.9
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DF--INPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~ 154 (269)
+.+++||+|+ |.+|..++..+...|. +|+++++++++.+.+.+ .+.. .. .|-.+ .+.+...+.+... -
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSN--PEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence 4578999986 9999999999988999 99999998766554422 2221 12 22222 2333333333221 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|+++.++|.
T Consensus 82 ~~id~lv~~ag~ 93 (241)
T PRK07454 82 GCPDVLINNAGM 93 (241)
T ss_pred CCCCEEEECCCc
Confidence 269999998874
No 337
>PRK06483 dihydromonapterin reductase; Provisional
Probab=96.06 E-value=0.058 Score=43.35 Aligned_cols=79 Identities=11% Similarity=0.124 Sum_probs=49.9
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHhCCCce-eeCCCCCCCccHHHHHHhhhCC-CCccEE
Q 024295 85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK-KEKGKAFGMTD-FINPDDEPNKSISELVKGITHG-MGVDYC 160 (269)
Q Consensus 85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~-~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~~-~~~d~v 160 (269)
++++||+|+ |.+|.+.++.+...|+ +|+.+++++++ .+.++..+... ..|..+ .+...+.+.+.... .++|++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~l 78 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQAGAQCIQADFST--NAGIMAFIDELKQHTDGLRAI 78 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHHcCCEEEEcCCCC--HHHHHHHHHHHHhhCCCccEE
Confidence 467999986 8999999998888899 99999887643 23344455322 123222 23333333333221 269999
Q ss_pred EEccCC
Q 024295 161 FECTGV 166 (269)
Q Consensus 161 ~d~~g~ 166 (269)
+++.|.
T Consensus 79 v~~ag~ 84 (236)
T PRK06483 79 IHNASD 84 (236)
T ss_pred EECCcc
Confidence 998864
No 338
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=96.06 E-value=0.048 Score=44.39 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=50.9
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-eee--CCCCCCCccHHHHHHhhh-CC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DFI--NPDDEPNKSISELVKGIT-HG 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v~--~~~~~~~~~~~~~i~~~~-~~ 154 (269)
+++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+ ++.|.. ..+ |..+ .....+.+.+.. .-
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTD--HDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCC--HHHHHHHHHHHHHhc
Confidence 5789999986 9999999998888899 899999887655433 223321 112 3322 122333333221 11
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|+++.+.|.
T Consensus 86 ~~~d~li~~ag~ 97 (255)
T PRK07523 86 GPIDILVNNAGM 97 (255)
T ss_pred CCCCEEEECCCC
Confidence 379999998874
No 339
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.05 E-value=0.07 Score=41.69 Aligned_cols=75 Identities=23% Similarity=0.343 Sum_probs=49.1
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C----CCce-eeCCCCCCCccHHHHHHhhhCCCC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F----GMTD-FINPDDEPNKSISELVKGITHGMG 156 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~----g~~~-v~~~~~~~~~~~~~~i~~~~~~~~ 156 (269)
++.+++|+|+ |.+|..++..+...|. +|+.+.|+.++.+.+.+ + +... ..+..+ .++..+.+ .+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~------~~ 97 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRARFGEGVGAVETSD--DAARAAAI------KG 97 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCC--HHHHHHHH------hc
Confidence 5789999986 9999988888888887 99999998877665433 2 2221 111111 12222222 16
Q ss_pred ccEEEEccCCh
Q 024295 157 VDYCFECTGVP 167 (269)
Q Consensus 157 ~d~v~d~~g~~ 167 (269)
.|+||.++..+
T Consensus 98 ~diVi~at~~g 108 (194)
T cd01078 98 ADVVFAAGAAG 108 (194)
T ss_pred CCEEEECCCCC
Confidence 89999988654
No 340
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=96.04 E-value=0.033 Score=42.03 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=48.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC--cchHHHH----HhCCCc-eeeCCCCCCCccHHHHHHhhh-CCCC
Q 024295 86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN--PWKKEKG----KAFGMT-DFINPDDEPNKSISELVKGIT-HGMG 156 (269)
Q Consensus 86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~--~~~~~~~----~~~g~~-~v~~~~~~~~~~~~~~i~~~~-~~~~ 156 (269)
+++||+|+ +++|...++.+...|..+|+.+.++ .++.+.+ +..+.. .++..+-.+.++....+.+.. ....
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 47899986 8999998888777777688888888 3433333 334432 222211101233333333332 1238
Q ss_pred ccEEEEccCC
Q 024295 157 VDYCFECTGV 166 (269)
Q Consensus 157 ~d~v~d~~g~ 166 (269)
+|++|.+.|.
T Consensus 81 ld~li~~ag~ 90 (167)
T PF00106_consen 81 LDILINNAGI 90 (167)
T ss_dssp ESEEEEECSC
T ss_pred cccccccccc
Confidence 9999999875
No 341
>PRK07774 short chain dehydrogenase; Provisional
Probab=96.03 E-value=0.047 Score=44.21 Aligned_cols=80 Identities=21% Similarity=0.246 Sum_probs=49.4
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-e--eeCCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-D--FINPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~--v~~~~~~~~~~~~~~i~~~~~-~ 154 (269)
+++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+. +.+.. + ..|..+ .....+.+.+... .
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSD--PDSAKAMADATVSAF 81 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHh
Confidence 4678999986 9999999988888899 9999998876544332 22211 1 223222 1222222222211 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|++|.++|.
T Consensus 82 ~~id~vi~~ag~ 93 (250)
T PRK07774 82 GGIDYLVNNAAI 93 (250)
T ss_pred CCCCEEEECCCC
Confidence 269999998873
No 342
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=96.02 E-value=0.045 Score=44.65 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=51.2
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-eee--CCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-DFI--NPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v~--~~~~~~~~~~~~~i~~~~~-~ 154 (269)
+++++||+|+ |.+|...++.+...|+ +|+.++++.++.+.+. ..+.. ..+ |..+ ...+.+.+.++.. .
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d--~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVAD--EADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence 5789999986 9999999988888999 9999999877655443 22321 122 3222 2223222222211 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|.++.++|.
T Consensus 88 ~~id~vi~~ag~ 99 (259)
T PRK08213 88 GHVDILVNNAGA 99 (259)
T ss_pred CCCCEEEECCCC
Confidence 278999998864
No 343
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.02 E-value=0.044 Score=46.81 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=31.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
...+|+|+|+|++|..+++.+...|..++..+|.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45789999999999999999999999899999875
No 344
>PRK07063 short chain dehydrogenase; Provisional
Probab=96.00 E-value=0.044 Score=44.77 Aligned_cols=80 Identities=19% Similarity=0.180 Sum_probs=50.6
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C-----CCc-ee--eCCCCCCCccHHHHHHhhhC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F-----GMT-DF--INPDDEPNKSISELVKGITH 153 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~-----g~~-~v--~~~~~~~~~~~~~~i~~~~~ 153 (269)
.++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+.+ + +.. .. .|..+ +.+..+.+.+...
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~ 82 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTD--AASVAAAVAAAEE 82 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence 4688999986 8999999998888999 89999988766554322 1 211 12 23222 1223333333211
Q ss_pred -CCCccEEEEccCC
Q 024295 154 -GMGVDYCFECTGV 166 (269)
Q Consensus 154 -~~~~d~v~d~~g~ 166 (269)
-..+|++++++|.
T Consensus 83 ~~g~id~li~~ag~ 96 (260)
T PRK07063 83 AFGPLDVLVNNAGI 96 (260)
T ss_pred HhCCCcEEEECCCc
Confidence 1279999998873
No 345
>PRK05717 oxidoreductase; Validated
Probab=95.99 E-value=0.046 Score=44.53 Aligned_cols=80 Identities=19% Similarity=0.173 Sum_probs=50.2
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCc-e--eeCCCCCCCccHHHHHHhhhCC-CCc
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMT-D--FINPDDEPNKSISELVKGITHG-MGV 157 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~--v~~~~~~~~~~~~~~i~~~~~~-~~~ 157 (269)
+++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+ ++++.. . ..|-.+ .....+.+.+.... ..+
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~i 85 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALGENAWFIAMDVAD--EAQVAAGVAEVLGQFGRL 85 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcCCceEEEEccCCC--HHHHHHHHHHHHHHhCCC
Confidence 4788999986 9999999888888899 899998876654443 334422 1 222222 12222223332211 268
Q ss_pred cEEEEccCC
Q 024295 158 DYCFECTGV 166 (269)
Q Consensus 158 d~v~d~~g~ 166 (269)
|+++.+.|.
T Consensus 86 d~li~~ag~ 94 (255)
T PRK05717 86 DALVCNAAI 94 (255)
T ss_pred CEEEECCCc
Confidence 999998864
No 346
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=95.98 E-value=0.0082 Score=40.49 Aligned_cols=86 Identities=24% Similarity=0.305 Sum_probs=53.5
Q ss_pred EEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce---eeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295 89 AVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD---FINPDDEPNKSISELVKGITHGMGVDYCFECTG 165 (269)
Q Consensus 89 lI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g 165 (269)
|-+|+|. |..+..+++. +..++++++.+++..+.+++..... +...+. .++ .. ++..||+|+-...
T Consensus 1 LdiG~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~---~~l-----~~-~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGT-GRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDA---EDL-----PF-PDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TT-SHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBT---TSS-----SS--TT-EEEEEEESH
T ss_pred CEecCcC-CHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehH---HhC-----cc-ccccccccccccc
Confidence 4567774 8888899888 4449999999999888887743211 222111 111 11 2338999875331
Q ss_pred ------ChhHHHHHHHHcccCCcEEEE
Q 024295 166 ------VPSLLSEALETTKVGKGKVIV 186 (269)
Q Consensus 166 ------~~~~~~~~~~~l~~~~G~~v~ 186 (269)
....+.++.+.++++ |+++.
T Consensus 70 ~~~~~~~~~~l~e~~rvLk~g-G~l~~ 95 (95)
T PF08241_consen 70 LHHLEDPEAALREIYRVLKPG-GRLVI 95 (95)
T ss_dssp GGGSSHHHHHHHHHHHHEEEE-EEEEE
T ss_pred eeeccCHHHHHHHHHHHcCcC-eEEeC
Confidence 123578999999996 98863
No 347
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=95.98 E-value=0.047 Score=44.19 Aligned_cols=79 Identities=25% Similarity=0.207 Sum_probs=50.2
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCC-ceee--CCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGM-TDFI--NPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~-~~v~--~~~~~~~~~~~~~i~~~~~-~ 154 (269)
+++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+. +.+. ..++ |..+ +..+.+.+.++.+ -
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITD--RDSVDTAVAAAEQAL 78 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence 4688999986 8999999998888899 8999998876655432 2232 1222 2221 1223333333221 1
Q ss_pred CCccEEEEccC
Q 024295 155 MGVDYCFECTG 165 (269)
Q Consensus 155 ~~~d~v~d~~g 165 (269)
.++|+++.+.|
T Consensus 79 ~~~d~vi~~ag 89 (250)
T TIGR03206 79 GPVDVLVNNAG 89 (250)
T ss_pred CCCCEEEECCC
Confidence 26899999886
No 348
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=95.98 E-value=0.06 Score=41.61 Aligned_cols=72 Identities=22% Similarity=0.225 Sum_probs=55.7
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295 81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC 160 (269)
Q Consensus 81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v 160 (269)
-++++++||-+|+|. |.+...|....++ ..++++.++++.....+.|.. |+. .+..+.+....++ .||+|
T Consensus 10 ~I~pgsrVLDLGCGd-G~LL~~L~~~k~v-~g~GvEid~~~v~~cv~rGv~-Viq------~Dld~gL~~f~d~-sFD~V 79 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGD-GELLAYLKDEKQV-DGYGVEIDPDNVAACVARGVS-VIQ------GDLDEGLADFPDQ-SFDYV 79 (193)
T ss_pred HcCCCCEEEecCCCc-hHHHHHHHHhcCC-eEEEEecCHHHHHHHHHcCCC-EEE------CCHHHhHhhCCCC-CccEE
Confidence 467999999999986 7777777777788 999999999998888888866 442 4555566665544 99999
Q ss_pred EE
Q 024295 161 FE 162 (269)
Q Consensus 161 ~d 162 (269)
+=
T Consensus 80 Il 81 (193)
T PF07021_consen 80 IL 81 (193)
T ss_pred eh
Confidence 74
No 349
>PRK06181 short chain dehydrogenase; Provisional
Probab=95.97 E-value=0.045 Score=44.75 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=49.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce-e--eCCCCCCCccHHHHHHhhhC-CCC
Q 024295 86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD-F--INPDDEPNKSISELVKGITH-GMG 156 (269)
Q Consensus 86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~ 156 (269)
.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ +..+... + .|..+ ...+...+.+... -.+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSD--AEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHcCC
Confidence 57999986 9999999998888899 999999887654433 2233321 1 22222 1223333333211 126
Q ss_pred ccEEEEccCC
Q 024295 157 VDYCFECTGV 166 (269)
Q Consensus 157 ~d~v~d~~g~ 166 (269)
+|+++.++|.
T Consensus 79 id~vi~~ag~ 88 (263)
T PRK06181 79 IDILVNNAGI 88 (263)
T ss_pred CCEEEECCCc
Confidence 8999999864
No 350
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.97 E-value=0.059 Score=42.28 Aligned_cols=35 Identities=14% Similarity=0.357 Sum_probs=30.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
.+.+|+|+|+|++|.-.+..+...|.+++..+|..
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46789999999999999999999999889998754
No 351
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=95.96 E-value=0.04 Score=38.96 Aligned_cols=96 Identities=23% Similarity=0.273 Sum_probs=57.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295 85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITHGMGVDYC 160 (269)
Q Consensus 85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v 160 (269)
|.+||..|+|. |..++.+++.. ..++++++.+++..+.++. .+.+.-++... .++.+..... ....+|+|
T Consensus 1 g~~vlD~~~G~-G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~---~D~~~~~~~~-~~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGS-GTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIV---GDARDLPEPL-PDGKFDLI 74 (117)
T ss_dssp TEEEEEETSTT-CHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEE---SHHHHHHHTC-TTT-EEEE
T ss_pred CCEEEEcCcch-HHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEE---Cchhhchhhc-cCceeEEE
Confidence 45788887764 66666666655 4499999999988887765 22210011111 4444443233 33489998
Q ss_pred EEccCC--------------hhHHHHHHHHcccCCcEEEEE
Q 024295 161 FECTGV--------------PSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 161 ~d~~g~--------------~~~~~~~~~~l~~~~G~~v~~ 187 (269)
+-.... ...+..+.+.++++ |.++.+
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g-G~~~~~ 114 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG-GVLVFI 114 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCC-eEEEEE
Confidence 753311 12377889999996 988765
No 352
>PRK06194 hypothetical protein; Provisional
Probab=95.96 E-value=0.034 Score=46.19 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=49.5
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hh---CCCce-ee--CCCCCCCccHHHHHHhhh-CC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KA---FGMTD-FI--NPDDEPNKSISELVKGIT-HG 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~---~g~~~-v~--~~~~~~~~~~~~~i~~~~-~~ 154 (269)
+++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.. .+ .+... ++ |..+ ..++.+.+.+.. ..
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSD--AAQVEALADAALERF 81 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence 3578999986 8999999988888899 899999876655443 22 23221 12 2222 122322222221 11
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|++++++|.
T Consensus 82 g~id~vi~~Ag~ 93 (287)
T PRK06194 82 GAVHLLFNNAGV 93 (287)
T ss_pred CCCCEEEECCCC
Confidence 268999999874
No 353
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.96 E-value=0.048 Score=44.94 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=49.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h---CC--Cc-eee--CCCCCCCccHHHHHHhhhC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-A---FG--MT-DFI--NPDDEPNKSISELVKGITH 153 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~---~g--~~-~v~--~~~~~~~~~~~~~i~~~~~ 153 (269)
+++++||+|+ |.+|...++.+...|+ +|+.+++++++.+... + .+ .. .++ |-.+ +.+..+.+.+...
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~ 82 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD--EDQVARAVDAATA 82 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC--HHHHHHHHHHHHH
Confidence 4689999996 8999999999998999 8999998876544332 2 11 11 122 3222 1223333333221
Q ss_pred -CCCccEEEEccC
Q 024295 154 -GMGVDYCFECTG 165 (269)
Q Consensus 154 -~~~~d~v~d~~g 165 (269)
..++|+++.++|
T Consensus 83 ~~~~~d~li~~ag 95 (276)
T PRK05875 83 WHGRLHGVVHCAG 95 (276)
T ss_pred HcCCCCEEEECCC
Confidence 127899999886
No 354
>PRK06172 short chain dehydrogenase; Provisional
Probab=95.96 E-value=0.038 Score=44.91 Aligned_cols=80 Identities=21% Similarity=0.295 Sum_probs=49.9
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DF--INPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~ 154 (269)
+++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+ ++.+.. .. .|-.+ .....+.+.+... -
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTR--DAEVKALVEQTIAAY 82 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHh
Confidence 4689999986 8999999888888899 899999987664433 233322 12 22222 1222222222211 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|+++.+.|.
T Consensus 83 g~id~li~~ag~ 94 (253)
T PRK06172 83 GRLDYAFNNAGI 94 (253)
T ss_pred CCCCEEEECCCC
Confidence 278999998874
No 355
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.96 E-value=0.12 Score=43.03 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=54.9
Q ss_pred CCCCeEEEEcCCh-hHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295 83 EKGSSVAVLGLGT-VGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 83 ~~~~~vlI~G~g~-~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
-+|++++|+|.|. +|...+.++...|+ .|+...+.. .++.+.+ ..+|+++
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t----------------------~~L~~~~------~~aDIvI 207 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRT----------------------QNLPELV------KQADIIV 207 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCc----------------------hhHHHHh------ccCCEEE
Confidence 4789999999876 99999999999999 888776411 2222222 2789999
Q ss_pred EccCChhHHHHHHHHcccCCcEEEEEccC
Q 024295 162 ECTGVPSLLSEALETTKVGKGKVIVIGVG 190 (269)
Q Consensus 162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 190 (269)
+++|.+..+. .+.++++ ..++.+|..
T Consensus 208 ~AtG~~~~v~--~~~lk~g-avViDvg~n 233 (283)
T PRK14192 208 GAVGKPELIK--KDWIKQG-AVVVDAGFH 233 (283)
T ss_pred EccCCCCcCC--HHHcCCC-CEEEEEEEe
Confidence 9998765333 3568885 788888744
No 356
>PRK06138 short chain dehydrogenase; Provisional
Probab=95.96 E-value=0.049 Score=44.14 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=49.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C--CCc-eee--CCCCCCCccHHHHHHhhhC-CC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F--GMT-DFI--NPDDEPNKSISELVKGITH-GM 155 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~--g~~-~v~--~~~~~~~~~~~~~i~~~~~-~~ 155 (269)
+++++||+|+ |.+|...++.+...|+ +|+.+++++++.+...+ + +.. ..+ |..+ +....+.+.+... -.
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIAAGGRAFARQGDVGS--AEAVEALVDFVAARWG 80 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHcC
Confidence 4678999986 9999999888888898 89999988765544322 2 321 122 2222 1222222222211 13
Q ss_pred CccEEEEccCC
Q 024295 156 GVDYCFECTGV 166 (269)
Q Consensus 156 ~~d~v~d~~g~ 166 (269)
++|+++.+.|.
T Consensus 81 ~id~vi~~ag~ 91 (252)
T PRK06138 81 RLDVLVNNAGF 91 (252)
T ss_pred CCCEEEECCCC
Confidence 79999998874
No 357
>PRK12367 short chain dehydrogenase; Provisional
Probab=95.95 E-value=0.062 Score=43.72 Aligned_cols=73 Identities=19% Similarity=0.345 Sum_probs=46.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCc-chHHHHHhCCCcee--eCCCCCCCccHHHHHHhhhCCCCccE
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNP-WKKEKGKAFGMTDF--INPDDEPNKSISELVKGITHGMGVDY 159 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~-~~~~~~~~~g~~~v--~~~~~~~~~~~~~~i~~~~~~~~~d~ 159 (269)
++++++|+|+ |.+|.+.++.+...|+ +|+++++++ ++.+... .+.... .|-.+ . +.+.+.. + .+|+
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~~~~~~~~~-~~~~~~~~~D~~~---~---~~~~~~~-~-~iDi 82 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSKINNSESND-ESPNEWIKWECGK---E---ESLDKQL-A-SLDV 82 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCchhhhhhhc-cCCCeEEEeeCCC---H---HHHHHhc-C-CCCE
Confidence 3688999986 8999999998888999 999998876 2222111 111122 22221 1 1222322 2 6999
Q ss_pred EEEccCC
Q 024295 160 CFECTGV 166 (269)
Q Consensus 160 v~d~~g~ 166 (269)
+++++|.
T Consensus 83 lVnnAG~ 89 (245)
T PRK12367 83 LILNHGI 89 (245)
T ss_pred EEECCcc
Confidence 9999874
No 358
>PRK07577 short chain dehydrogenase; Provisional
Probab=95.95 E-value=0.042 Score=44.02 Aligned_cols=75 Identities=20% Similarity=0.205 Sum_probs=48.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc-eeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT-DFINPDDEPNKSISELVKGITHGMGVDYCF 161 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 161 (269)
+++++||+|+ |.+|...++.+...|+ +|+.++++.++. .... ...|..+ .....+.+.+.....+.|+++
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~~~~-----~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~d~vi 73 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSAIDD-----FPGELFACDLAD--IEQTAATLAQINEIHPVDAIV 73 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCcccc-----cCceEEEeeCCC--HHHHHHHHHHHHHhCCCcEEE
Confidence 3578999986 8999999988888898 999999876541 1111 1223322 233333344433333689999
Q ss_pred EccCC
Q 024295 162 ECTGV 166 (269)
Q Consensus 162 d~~g~ 166 (269)
.+.|.
T Consensus 74 ~~ag~ 78 (234)
T PRK07577 74 NNVGI 78 (234)
T ss_pred ECCCC
Confidence 98874
No 359
>PRK07035 short chain dehydrogenase; Provisional
Probab=95.95 E-value=0.049 Score=44.24 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=49.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-eee--CCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DFI--NPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v~--~~~~~~~~~~~~~i~~~~~-~ 154 (269)
+++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.+ .+.. +.+ |..+ .....+.+.+... -
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGE--MEQIDALFAHIRERH 83 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence 4678999986 8999999999988999 99999988765544322 2321 222 2222 1222222322211 1
Q ss_pred CCccEEEEccC
Q 024295 155 MGVDYCFECTG 165 (269)
Q Consensus 155 ~~~d~v~d~~g 165 (269)
..+|+++++.|
T Consensus 84 ~~id~li~~ag 94 (252)
T PRK07035 84 GRLDILVNNAA 94 (252)
T ss_pred CCCCEEEECCC
Confidence 26899998886
No 360
>PRK05854 short chain dehydrogenase; Provisional
Probab=95.94 E-value=0.056 Score=45.67 Aligned_cols=40 Identities=30% Similarity=0.346 Sum_probs=33.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHH
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEK 124 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~ 124 (269)
++++++|+|+ +++|.+.+..+...|+ +|+.++|++++.+.
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~ 53 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEA 53 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 4688999986 8999999888888899 99999998776544
No 361
>PRK06101 short chain dehydrogenase; Provisional
Probab=95.92 E-value=0.055 Score=43.66 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=34.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC
Q 024295 86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF 128 (269)
Q Consensus 86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~ 128 (269)
.+++|+|+ |++|...+..+...|+ +|+++++++++.+.+.+.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQ 44 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHh
Confidence 56899986 9999988887778899 899999988877766543
No 362
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=95.92 E-value=0.11 Score=43.45 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=48.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295 87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV 166 (269)
Q Consensus 87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~ 166 (269)
+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|.... .+..+.+. ..|+||.|+..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~~~~~~~------~aDivi~~vp~ 65 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLAAGAVTA--------ETARQVTE------QADVIFTMVPD 65 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCccc--------CCHHHHHh------cCCEEEEecCC
Confidence 37789999999988887777898 99999999988888877664311 11222221 56788887765
Q ss_pred hhHHH
Q 024295 167 PSLLS 171 (269)
Q Consensus 167 ~~~~~ 171 (269)
.....
T Consensus 66 ~~~~~ 70 (291)
T TIGR01505 66 SPQVE 70 (291)
T ss_pred HHHHH
Confidence 43333
No 363
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.91 E-value=0.15 Score=45.11 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=65.8
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCce--eeCCCCCCCccHHHHHHh
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTD--FINPDDEPNKSISELVKG 150 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~~ 150 (269)
....++++++||-+|+|+ |.-+.+++..++ ..+|+++|.++++.+.+++ +|.+. ++..+. ..+ .+
T Consensus 231 ~~l~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da---~~l----~~ 302 (431)
T PRK14903 231 LLMELEPGLRVLDTCAAP-GGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA---ERL----TE 302 (431)
T ss_pred HHhCCCCCCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch---hhh----hh
Confidence 345788999999998876 666777777763 2389999999999888754 56543 222211 111 11
Q ss_pred hhCCCCccEEE-E--ccCCh-------------------------hHHHHHHHHcccCCcEEEEEcc
Q 024295 151 ITHGMGVDYCF-E--CTGVP-------------------------SLLSEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 151 ~~~~~~~d~v~-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~ 189 (269)
..++ .||.|+ | |+|.. ..+..+++.+++| |.++..-.
T Consensus 303 ~~~~-~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG-G~LvYsTC 367 (431)
T PRK14903 303 YVQD-TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG-GILLYSTC 367 (431)
T ss_pred hhhc-cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEEC
Confidence 1223 799887 3 43321 1266788899997 98876543
No 364
>PRK08643 acetoin reductase; Validated
Probab=95.91 E-value=0.052 Score=44.17 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=49.5
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCce-e--eCCCCCCCccHHHHHHhhhC-CC
Q 024295 85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTD-F--INPDDEPNKSISELVKGITH-GM 155 (269)
Q Consensus 85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~ 155 (269)
++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+.. .+... . .|-.+ ++...+.+.+... -.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSD--RDQVFAAVRQVVDTFG 78 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence 568999986 8999999999888999 99999988766544322 23221 1 22222 1222232333211 12
Q ss_pred CccEEEEccCC
Q 024295 156 GVDYCFECTGV 166 (269)
Q Consensus 156 ~~d~v~d~~g~ 166 (269)
++|+++.+.|.
T Consensus 79 ~id~vi~~ag~ 89 (256)
T PRK08643 79 DLNVVVNNAGV 89 (256)
T ss_pred CCCEEEECCCC
Confidence 79999998864
No 365
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.91 E-value=0.062 Score=43.78 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=48.2
Q ss_pred CCCeEEEEcC---ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc--ee--eCCCCCCCccHHHHHHhhhC-CC
Q 024295 84 KGSSVAVLGL---GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT--DF--INPDDEPNKSISELVKGITH-GM 155 (269)
Q Consensus 84 ~~~~vlI~G~---g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~--~v--~~~~~~~~~~~~~~i~~~~~-~~ 155 (269)
.++++||+|+ +++|.+.++.+...|+ +|+.++++++..+.++++... +. .|-.+ +++..+.+.+... -.
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~g 82 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVDEEDLLVECDVAS--DESIERAFATIKERVG 82 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhccCceeEEeCCCCC--HHHHHHHHHHHHHHhC
Confidence 5788999986 4899999888888999 899888874433344443211 11 22222 1223333322221 12
Q ss_pred CccEEEEccC
Q 024295 156 GVDYCFECTG 165 (269)
Q Consensus 156 ~~d~v~d~~g 165 (269)
.+|++++++|
T Consensus 83 ~iD~lv~nAg 92 (252)
T PRK06079 83 KIDGIVHAIA 92 (252)
T ss_pred CCCEEEEccc
Confidence 7999999886
No 366
>PRK06179 short chain dehydrogenase; Provisional
Probab=95.90 E-value=0.03 Score=46.06 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=49.0
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce-eeCCCCCCCccHHHHHHhhhC-CCCccEEE
Q 024295 85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD-FINPDDEPNKSISELVKGITH-GMGVDYCF 161 (269)
Q Consensus 85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~v~ 161 (269)
+++++|+|+ |.+|...++.+...|+ +|+++++++++.+... +... ..|..+ ++++.+.+.+... -..+|+++
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~--~~~~~~~D~~d--~~~~~~~~~~~~~~~g~~d~li 78 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAAPIP--GVELLELDVTD--DASVQAAVDEVIARAGRIDVLV 78 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhccccC--CCeeEEeecCC--HHHHHHHHHHHHHhCCCCCEEE
Confidence 467999986 9999999888888899 8999998765543221 2221 223322 2333333333221 12689999
Q ss_pred EccCC
Q 024295 162 ECTGV 166 (269)
Q Consensus 162 d~~g~ 166 (269)
++.|.
T Consensus 79 ~~ag~ 83 (270)
T PRK06179 79 NNAGV 83 (270)
T ss_pred ECCCC
Confidence 99974
No 367
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.89 E-value=0.061 Score=43.74 Aligned_cols=80 Identities=20% Similarity=0.127 Sum_probs=50.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHHHHhhhCC-
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISELVKGITHG- 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~~~~~~- 154 (269)
+++++||+|+ |.+|.+.+..+...|+ +|+++++++++.+.+.+ .+.. ...|..+ .+.+...+.+....
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITD--EDQCANLVALALERF 80 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCC--HHHHHHHHHHHHHHc
Confidence 5688999986 8999999998888999 99999988766554432 2321 1222222 12333333322111
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
..+|+++.+.|.
T Consensus 81 g~~d~vi~~ag~ 92 (258)
T PRK07890 81 GRVDALVNNAFR 92 (258)
T ss_pred CCccEEEECCcc
Confidence 268999998863
No 368
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=95.89 E-value=0.054 Score=44.75 Aligned_cols=79 Identities=24% Similarity=0.193 Sum_probs=49.9
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-DF--INPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~ 154 (269)
++++++|+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+. +.+.. .. .|..+ .......+.+... -
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~ 85 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLD--KESLEQARQQILEDF 85 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence 4688999986 8999999999888999 8999998876554332 22322 12 22222 1223322332221 1
Q ss_pred CCccEEEEccC
Q 024295 155 MGVDYCFECTG 165 (269)
Q Consensus 155 ~~~d~v~d~~g 165 (269)
..+|++++++|
T Consensus 86 g~id~li~~ag 96 (278)
T PRK08277 86 GPCDILINGAG 96 (278)
T ss_pred CCCCEEEECCC
Confidence 27999999887
No 369
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=95.89 E-value=0.13 Score=37.14 Aligned_cols=87 Identities=21% Similarity=0.264 Sum_probs=50.4
Q ss_pred EEEEcC-ChhHHHHHHHHHHcC--CCeEEEEcCC--cchHH-HHHhCCCceeeCCCCCCCccHHHHHH------------
Q 024295 88 VAVLGL-GTVGLGAVDGARMHG--AAKIIGIDKN--PWKKE-KGKAFGMTDFINPDDEPNKSISELVK------------ 149 (269)
Q Consensus 88 vlI~G~-g~~G~~a~~la~~~g--~~~v~~~~~~--~~~~~-~~~~~g~~~v~~~~~~~~~~~~~~i~------------ 149 (269)
|.|+|+ |++|..+.++.+... + +|++..-. -+++. .++++.+..++-.++ ...+.++
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~----~~~~~l~~~~~~~~~~~~v 75 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSAGSNIEKLAEQAREFKPKYVVIADE----EAYEELKKALPSKGPGIEV 75 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEESSTHHHHHHHHHHHT-SEEEESSH----HHHHHHHHHHHHTTSSSEE
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH----HHHHHHHHHhhhcCCCCEE
Confidence 578896 999999999999886 5 77766533 23332 346677776665542 2222222
Q ss_pred --------hhhCCCCccEEEEccCChhHHHHHHHHccc
Q 024295 150 --------GITHGMGVDYCFECTGVPSLLSEALETTKV 179 (269)
Q Consensus 150 --------~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~ 179 (269)
+......+|+++.++.+-..+.-.+..++.
T Consensus 76 ~~G~~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~ 113 (129)
T PF02670_consen 76 LSGPEGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKA 113 (129)
T ss_dssp EESHHHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHT
T ss_pred EeChHHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHC
Confidence 323323677777766554455666666665
No 370
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=95.89 E-value=0.068 Score=44.29 Aligned_cols=78 Identities=21% Similarity=0.214 Sum_probs=56.8
Q ss_pred CCCeEEEEcC-ChhHHH-HHHHHHHcCCCeEEEEcCCcchHHHHHh-----CCC---ceeeCCCCCCCcc-HHHHHHhhh
Q 024295 84 KGSSVAVLGL-GTVGLG-AVDGARMHGAAKIIGIDKNPWKKEKGKA-----FGM---TDFINPDDEPNKS-ISELVKGIT 152 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~-a~~la~~~g~~~v~~~~~~~~~~~~~~~-----~g~---~~v~~~~~~~~~~-~~~~i~~~~ 152 (269)
-|+|.+|+|+ .++|.+ |-++|+ .|. +|+.+.|+++|++.+++ .++ .+++|..+ ++ .-+.+++..
T Consensus 48 ~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~---~~~~ye~i~~~l 122 (312)
T KOG1014|consen 48 LGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTK---GDEVYEKLLEKL 122 (312)
T ss_pred cCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCC---CchhHHHHHHHh
Confidence 3689999997 689976 677777 899 89999999999987643 342 34667665 33 244455555
Q ss_pred CCCCccEEEEccCC
Q 024295 153 HGMGVDYCFECTGV 166 (269)
Q Consensus 153 ~~~~~d~v~d~~g~ 166 (269)
.+..+-+.+|++|.
T Consensus 123 ~~~~VgILVNNvG~ 136 (312)
T KOG1014|consen 123 AGLDVGILVNNVGM 136 (312)
T ss_pred cCCceEEEEecccc
Confidence 55588899999985
No 371
>PRK08219 short chain dehydrogenase; Provisional
Probab=95.89 E-value=0.11 Score=41.16 Aligned_cols=75 Identities=11% Similarity=0.039 Sum_probs=45.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCC-CCccEEEE
Q 024295 86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHG-MGVDYCFE 162 (269)
Q Consensus 86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~-~~~d~v~d 162 (269)
.++||+|+ |.+|...+..+... . +|++++++.++.+.+.+ ...-.++..+- .+. +.+.+.... .++|.++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~---~~~-~~~~~~~~~~~~id~vi~ 77 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELAAELPGATPFPVDL---TDP-EAIAAAVEQLGRLDVLVH 77 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHHHHhccceEEecCC---CCH-HHHHHHHHhcCCCCEEEE
Confidence 57999986 89999888777666 6 89999998776655543 21112221111 111 222222221 26999999
Q ss_pred ccCC
Q 024295 163 CTGV 166 (269)
Q Consensus 163 ~~g~ 166 (269)
++|.
T Consensus 78 ~ag~ 81 (227)
T PRK08219 78 NAGV 81 (227)
T ss_pred CCCc
Confidence 8874
No 372
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.88 E-value=0.078 Score=43.14 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=49.3
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHhCCCce---eeCCCCCCCccHHHHHHhhhC-CCC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK--KEKGKAFGMTD---FINPDDEPNKSISELVKGITH-GMG 156 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~--~~~~~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~ 156 (269)
+++++||+|+ +++|.+.++.+...|+ +|+.+++++.. .+.+++.+... ..|-.+ .++..+.+.+... -.+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~ 83 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEAPETQAQVEALGRKFHFITADLIQ--QKDIDSIVSQAVEVMGH 83 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHcCCeEEEEEeCCCC--HHHHHHHHHHHHHHcCC
Confidence 5788999986 8999999999888999 88888765421 22334444321 223332 2333333333211 127
Q ss_pred ccEEEEccCC
Q 024295 157 VDYCFECTGV 166 (269)
Q Consensus 157 ~d~v~d~~g~ 166 (269)
+|+++++.|.
T Consensus 84 iD~lv~~ag~ 93 (251)
T PRK12481 84 IDILINNAGI 93 (251)
T ss_pred CCEEEECCCc
Confidence 9999998864
No 373
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.88 E-value=0.14 Score=36.18 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=59.4
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh
Q 024295 88 VAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP 167 (269)
Q Consensus 88 vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~ 167 (269)
|+|.|.|.+|...++.++..+. +|++++.++++.+.+++.|...+. -+ ..-.+.+++. +-..++.++-+++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~~i~-gd----~~~~~~l~~a-~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVEVIY-GD----ATDPEVLERA-GIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSEEEE-S-----TTSHHHHHHT-TGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhccccccc-cc----chhhhHHhhc-CccccCEEEEccCCH
Confidence 5788999999999999999665 999999999999999998855333 22 1112233332 223788888887765
Q ss_pred hHH---HHHHHHcccCCcEEEEE
Q 024295 168 SLL---SEALETTKVGKGKVIVI 187 (269)
Q Consensus 168 ~~~---~~~~~~l~~~~G~~v~~ 187 (269)
..- ...++.+.+. .+++..
T Consensus 74 ~~n~~~~~~~r~~~~~-~~ii~~ 95 (116)
T PF02254_consen 74 EENLLIALLARELNPD-IRIIAR 95 (116)
T ss_dssp HHHHHHHHHHHHHTTT-SEEEEE
T ss_pred HHHHHHHHHHHHHCCC-CeEEEE
Confidence 332 2233444453 555544
No 374
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.87 E-value=0.16 Score=42.06 Aligned_cols=101 Identities=14% Similarity=0.071 Sum_probs=60.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC-C-ceeeCCCCC--CCccHHHHHHhhhCCCCccE
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG-M-TDFINPDDE--PNKSISELVKGITHGMGVDY 159 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g-~-~~v~~~~~~--~~~~~~~~i~~~~~~~~~d~ 159 (269)
..++||++|+|. |..+..+++....+++++++.+++-.+.++++- . ...++.... -..+..+.+++. + ..+|+
T Consensus 72 ~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~-~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-E-NTFDV 148 (270)
T ss_pred CCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-C-CCccE
Confidence 456999999876 556667777665668999999888777776631 1 000110000 002233333332 2 38998
Q ss_pred EE-Ecc---C------ChhHHHHHHHHcccCCcEEEEEc
Q 024295 160 CF-ECT---G------VPSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 160 v~-d~~---g------~~~~~~~~~~~l~~~~G~~v~~g 188 (269)
|+ |.. + ....++.+.+.|+++ |.++...
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pg-G~lv~~~ 186 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNED-GIFVAQS 186 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCC-cEEEEcC
Confidence 86 433 1 122356888999996 9998764
No 375
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.85 E-value=0.064 Score=40.45 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=51.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC 163 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 163 (269)
.+.+|+|+|+|.+|..-++.+...|+ +|++++ ++..+.+++++... +..+. +.+. +-.++|+|+-+
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs--p~~~~~l~~l~~i~-~~~~~-----~~~~-----dl~~a~lViaa 77 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS--PEICKEMKELPYIT-WKQKT-----FSND-----DIKDAHLIYAA 77 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc--CccCHHHHhccCcE-EEecc-----cChh-----cCCCceEEEEC
Confidence 57899999999999988888888899 888884 44444455554211 11111 1110 11378999999
Q ss_pred cCChhHHHHHHHHccc
Q 024295 164 TGVPSLLSEALETTKV 179 (269)
Q Consensus 164 ~g~~~~~~~~~~~l~~ 179 (269)
++.+. .+..+...+.
T Consensus 78 T~d~e-~N~~i~~~a~ 92 (157)
T PRK06719 78 TNQHA-VNMMVKQAAH 92 (157)
T ss_pred CCCHH-HHHHHHHHHH
Confidence 98874 4554444444
No 376
>PRK06484 short chain dehydrogenase; Validated
Probab=95.84 E-value=0.059 Score=48.90 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=66.5
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCce---eeCCCCCCCccHHHHHHhhhC-CCCc
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTD---FINPDDEPNKSISELVKGITH-GMGV 157 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~ 157 (269)
.++++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+ ++... ..|-.+ ++...+.+.+... -..+
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i 344 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGDEHLSVQADITD--EAAVESAFAQIQARWGRL 344 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence 5688999986 8999999998888999 99999998877766544 44321 223332 2233333333221 1279
Q ss_pred cEEEEccCChh--------------------------HHHHHHHHcccCCcEEEEEccCC
Q 024295 158 DYCFECTGVPS--------------------------LLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 158 d~v~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
|++++++|... ..+.++..++.+ |+++.++...
T Consensus 345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-g~iv~isS~~ 403 (520)
T PRK06484 345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQG-GVIVNLGSIA 403 (520)
T ss_pred CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccC-CEEEEECchh
Confidence 99999887410 123334455564 8999887554
No 377
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.83 E-value=0.059 Score=44.18 Aligned_cols=80 Identities=14% Similarity=0.234 Sum_probs=47.5
Q ss_pred CCCeEEEEcC---ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceee--CCCCCCCccHHHHHHhhhC-
Q 024295 84 KGSSVAVLGL---GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFI--NPDDEPNKSISELVKGITH- 153 (269)
Q Consensus 84 ~~~~vlI~G~---g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~--~~~~~~~~~~~~~i~~~~~- 153 (269)
+++++||+|+ +++|.+.++.+...|+ +|+.+.++++..+.+++ .+....+ |-.+ .++..+.+.+...
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~ 81 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLEERVRKMAAELDSELVFRCDVAS--DDEINQVFADLGKH 81 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHhccCCceEEECCCCC--HHHHHHHHHHHHHH
Confidence 5788999983 4899999888888999 88887655432233322 3322222 3222 2333333333221
Q ss_pred CCCccEEEEccCC
Q 024295 154 GMGVDYCFECTGV 166 (269)
Q Consensus 154 ~~~~d~v~d~~g~ 166 (269)
-.++|++++++|.
T Consensus 82 ~g~iD~lVnnAG~ 94 (261)
T PRK08690 82 WDGLDGLVHSIGF 94 (261)
T ss_pred hCCCcEEEECCcc
Confidence 1279999998863
No 378
>PRK08628 short chain dehydrogenase; Provisional
Probab=95.83 E-value=0.053 Score=44.19 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=50.3
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---CCCc-ee--eCCCCCCCccHHHHHHhhhCC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA---FGMT-DF--INPDDEPNKSISELVKGITHG-M 155 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~~~i~~~~~~-~ 155 (269)
+++++||+|+ |.+|...++.+...|+ +|+.+++++++.+..++ .+.. .. .|..+ +......+.+.... .
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~ 82 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTD--DAQCRDAVEQTVAKFG 82 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHhcC
Confidence 4678999986 8999998888888899 88888888766544333 3322 12 22222 12233333332211 2
Q ss_pred CccEEEEccCC
Q 024295 156 GVDYCFECTGV 166 (269)
Q Consensus 156 ~~d~v~d~~g~ 166 (269)
++|+++.++|.
T Consensus 83 ~id~vi~~ag~ 93 (258)
T PRK08628 83 RIDGLVNNAGV 93 (258)
T ss_pred CCCEEEECCcc
Confidence 79999999873
No 379
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.82 E-value=0.041 Score=42.27 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=28.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295 87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP 119 (269)
Q Consensus 87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~ 119 (269)
+|+|+|+|++|...++.+...|..+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999988889998899998654
No 380
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.81 E-value=0.083 Score=43.88 Aligned_cols=87 Identities=17% Similarity=0.252 Sum_probs=56.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295 87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV 166 (269)
Q Consensus 87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~ 166 (269)
+|.|+|.|.+|...+..++..|. +|+++++++++.+.+.+.|..... . .+. +.+ ...|+||-|+..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~~~~~---~---~~~-~~~------~~aDlVilavp~ 67 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGLVDEA---S---TDL-SLL------KDCDLVILALPI 67 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCcccc---c---CCH-hHh------cCCCEEEEcCCH
Confidence 58899999999988888887888 899999999888888777642111 1 111 111 167999999875
Q ss_pred hhH---HHHHHHHcccCCcEEEEEc
Q 024295 167 PSL---LSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 167 ~~~---~~~~~~~l~~~~G~~v~~g 188 (269)
... +..+...++++ -.+..++
T Consensus 68 ~~~~~~~~~l~~~l~~~-~ii~d~~ 91 (279)
T PRK07417 68 GLLLPPSEQLIPALPPE-AIVTDVG 91 (279)
T ss_pred HHHHHHHHHHHHhCCCC-cEEEeCc
Confidence 422 23333444453 4444443
No 381
>PRK11579 putative oxidoreductase; Provisional
Probab=95.80 E-value=0.18 Score=43.24 Aligned_cols=130 Identities=16% Similarity=0.120 Sum_probs=73.7
Q ss_pred eEEEEcCChhHH-HHHHH-HHHcCCCeEEEEc-CCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295 87 SVAVLGLGTVGL-GAVDG-ARMHGAAKIIGID-KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC 163 (269)
Q Consensus 87 ~vlI~G~g~~G~-~a~~l-a~~~g~~~v~~~~-~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 163 (269)
+|.|+|+|.+|. ..... .+.-++ +++++. +++++. ..+++...++ .++.+.+ ....+|+|+-|
T Consensus 6 rvgiiG~G~i~~~~~~~~~~~~~~~-~l~av~d~~~~~~--~~~~~~~~~~-------~~~~ell----~~~~vD~V~I~ 71 (346)
T PRK11579 6 RVGLIGYGYASKTFHAPLIAGTPGL-ELAAVSSSDATKV--KADWPTVTVV-------SEPQHLF----NDPNIDLIVIP 71 (346)
T ss_pred eEEEECCCHHHHHHHHHHHhhCCCC-EEEEEECCCHHHH--HhhCCCCcee-------CCHHHHh----cCCCCCEEEEc
Confidence 689999999886 33443 334467 666654 443332 2334322222 2333333 23489999999
Q ss_pred cCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295 164 TGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF 235 (269)
Q Consensus 164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 235 (269)
+....+.+.+..++.. |+-|++..+.... .-....+. .+++.+.-... +.....++.+.+++++|.+
T Consensus 72 tp~~~H~~~~~~al~a--GkhVl~EKPla~t-~~ea~~l~~~a~~~g~~l~v~~~--~R~~p~~~~~k~~i~~g~i 142 (346)
T PRK11579 72 TPNDTHFPLAKAALEA--GKHVVVDKPFTVT-LSQARELDALAKSAGRVLSVFHN--RRWDSDFLTLKALLAEGVL 142 (346)
T ss_pred CCcHHHHHHHHHHHHC--CCeEEEeCCCCCC-HHHHHHHHHHHHHhCCEEEEEee--ccCCHHHHHHHHHHhcCCC
Confidence 9888788888888877 6777786554211 11111221 23444432221 1122457888889998875
No 382
>PRK06914 short chain dehydrogenase; Provisional
Probab=95.79 E-value=0.063 Score=44.36 Aligned_cols=78 Identities=19% Similarity=0.200 Sum_probs=49.7
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC---cee--eCCCCCCCccHHHHHHhhhC-
Q 024295 85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM---TDF--INPDDEPNKSISELVKGITH- 153 (269)
Q Consensus 85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~---~~v--~~~~~~~~~~~~~~i~~~~~- 153 (269)
++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+ .+. ..+ .|..+ ++++.+ +.+...
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~-~~~~~~~ 78 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD--QNSIHN-FQLVLKE 78 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC--HHHHHH-HHHHHHh
Confidence 567999986 8999999988888899 99999988766554422 221 112 23322 223333 433321
Q ss_pred CCCccEEEEccCC
Q 024295 154 GMGVDYCFECTGV 166 (269)
Q Consensus 154 ~~~~d~v~d~~g~ 166 (269)
-.++|+++.+.|.
T Consensus 79 ~~~id~vv~~ag~ 91 (280)
T PRK06914 79 IGRIDLLVNNAGY 91 (280)
T ss_pred cCCeeEEEECCcc
Confidence 1278999998864
No 383
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.78 E-value=0.36 Score=39.79 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=63.4
Q ss_pred hcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhC
Q 024295 79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITH 153 (269)
Q Consensus 79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~ 153 (269)
...++++++||-+|+|+ |..++.++..++. ..|++++.++++.+.+++ .|...+.-.. .+.. .+.. ..
T Consensus 66 ~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~----~D~~-~~~~-~~ 138 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAP-GGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTN----FDGR-VFGA-AV 138 (264)
T ss_pred HhCCCCcCEEEEECCCc-hHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEec----CCHH-Hhhh-hc
Confidence 34678999999998876 6666667776642 389999999988877644 5544321111 1111 1111 12
Q ss_pred CCCccEEE-E--ccCC-------------------------hhHHHHHHHHcccCCcEEEEEc
Q 024295 154 GMGVDYCF-E--CTGV-------------------------PSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 154 ~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g 188 (269)
+ .||.|+ | |+|. ...+..+++.+++| |+++...
T Consensus 139 ~-~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg-G~lvYst 199 (264)
T TIGR00446 139 P-KFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG-GVLVYST 199 (264)
T ss_pred c-CCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence 2 599886 4 3332 12567788899996 9987654
No 384
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=95.78 E-value=0.028 Score=46.89 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=56.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-eeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DFINPDDEPNKSISELVKGITHGMGVD 158 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d 158 (269)
++.+||-+|+|. |..+..+++. |. +|+++|.+++..+.+++ .+.. .+.. .+.... .+ + ..||
T Consensus 120 ~~~~vLDlGcG~-G~~~~~la~~-g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~------~D~~~~--~~-~-~~fD 186 (287)
T PRK12335 120 KPGKALDLGCGQ-GRNSLYLALL-GF-DVTAVDINQQSLENLQEIAEKENLNIRTGL------YDINSA--SI-Q-EEYD 186 (287)
T ss_pred CCCCEEEeCCCC-CHHHHHHHHC-CC-EEEEEECCHHHHHHHHHHHHHcCCceEEEE------echhcc--cc-c-CCcc
Confidence 455899999876 7777777764 77 99999999887776654 2321 1111 111100 11 2 3799
Q ss_pred EEEEccC--------ChhHHHHHHHHcccCCcEEEEEc
Q 024295 159 YCFECTG--------VPSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 159 ~v~d~~g--------~~~~~~~~~~~l~~~~G~~v~~g 188 (269)
+|+...- .+..+..+.+.+++| |.++.+.
T Consensus 187 ~I~~~~vl~~l~~~~~~~~l~~~~~~Lkpg-G~~l~v~ 223 (287)
T PRK12335 187 FILSTVVLMFLNRERIPAIIKNMQEHTNPG-GYNLIVC 223 (287)
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCC-cEEEEEE
Confidence 9986531 123477888899996 9866543
No 385
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.78 E-value=0.05 Score=44.97 Aligned_cols=47 Identities=17% Similarity=0.094 Sum_probs=39.3
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295 81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA 127 (269)
Q Consensus 81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~ 127 (269)
....+++++|+|+|+.+.+++..++..|+++|+++.|++++.+.+.+
T Consensus 118 ~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~ 164 (272)
T PRK12550 118 QVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAE 164 (272)
T ss_pred CCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 34456789999999999999999999999889999999887776543
No 386
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=95.77 E-value=0.079 Score=43.17 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=51.2
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc-eee--CCCCCCCccHHHHHHhhhC-CCCc
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT-DFI--NPDDEPNKSISELVKGITH-GMGV 157 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~v~--~~~~~~~~~~~~~i~~~~~-~~~~ 157 (269)
.++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+.+ ++.. ..+ |-.+ +....+.+.+... -..+
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~i 81 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEIGPAAIAVSLDVTR--QDSIDRIVAAAVERFGGI 81 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence 3678999986 9999999999888899 99999998876665433 3321 112 2222 1233333333211 1278
Q ss_pred cEEEEccCC
Q 024295 158 DYCFECTGV 166 (269)
Q Consensus 158 d~v~d~~g~ 166 (269)
|+++.+.|.
T Consensus 82 d~li~~ag~ 90 (257)
T PRK07067 82 DILFNNAAL 90 (257)
T ss_pred CEEEECCCc
Confidence 999998763
No 387
>PRK06484 short chain dehydrogenase; Validated
Probab=95.76 E-value=0.045 Score=49.67 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=53.3
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCce---eeCCCCCCCccHHHHHHhhhC-CCCc
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTD---FINPDDEPNKSISELVKGITH-GMGV 157 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~ 157 (269)
+++++||+|+ +++|.+.++.+...|+ +|+.++++.++.+.+ ++++... ..|-.+ ++...+.+.+... -.++
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i 80 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLGPDHHALAMDVSD--EAQIREGFEQLHREFGRI 80 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEeccCC--HHHHHHHHHHHHHHhCCC
Confidence 5788999986 8999999999989999 999999888776654 3455321 223322 2333333333221 1279
Q ss_pred cEEEEccCC
Q 024295 158 DYCFECTGV 166 (269)
Q Consensus 158 d~v~d~~g~ 166 (269)
|+++++.|.
T Consensus 81 D~li~nag~ 89 (520)
T PRK06484 81 DVLVNNAGV 89 (520)
T ss_pred CEEEECCCc
Confidence 999998864
No 388
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.76 E-value=0.067 Score=44.95 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=49.2
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----Hh-C-CCc-ee--eCCCCCCCccHHHHHHhhhC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KA-F-GMT-DF--INPDDEPNKSISELVKGITH 153 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~-~-g~~-~v--~~~~~~~~~~~~~~i~~~~~ 153 (269)
.++++||+|+ |.+|.++++.+...|+ +|+.++++.++.+.+ ++ . +.. .. .|-.+ .....+.+.++..
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~ 91 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTS--LASVRAAADALRA 91 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCC--HHHHHHHHHHHHh
Confidence 5689999986 8999999888888899 899999887654432 11 1 111 11 23222 1223333333321
Q ss_pred -CCCccEEEEccC
Q 024295 154 -GMGVDYCFECTG 165 (269)
Q Consensus 154 -~~~~d~v~d~~g 165 (269)
-.++|++++++|
T Consensus 92 ~~~~iD~li~nAg 104 (306)
T PRK06197 92 AYPRIDLLINNAG 104 (306)
T ss_pred hCCCCCEEEECCc
Confidence 126999999886
No 389
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.75 E-value=0.07 Score=43.71 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=47.1
Q ss_pred CCCeEEEEcC-C--hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCcee--eCCCCCCCccHHHHHHhhhCC
Q 024295 84 KGSSVAVLGL-G--TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTDF--INPDDEPNKSISELVKGITHG 154 (269)
Q Consensus 84 ~~~~vlI~G~-g--~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v--~~~~~~~~~~~~~~i~~~~~~ 154 (269)
+++++||+|+ + ++|.+.++.+...|+ +|+..+++++..+.++ +.|.... .|-.+ ++...+.+.+....
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~--~~~v~~~~~~~~~~ 83 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTN--PKSISNLFDDIKEK 83 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCC--HHHHHHHHHHHHHH
Confidence 5688999986 4 699998888888899 8888877642222222 2343322 23332 23333333332221
Q ss_pred -CCccEEEEccC
Q 024295 155 -MGVDYCFECTG 165 (269)
Q Consensus 155 -~~~d~v~d~~g 165 (269)
..+|++++++|
T Consensus 84 ~g~iDilVnnag 95 (260)
T PRK06603 84 WGSFDFLLHGMA 95 (260)
T ss_pred cCCccEEEEccc
Confidence 26999999876
No 390
>PRK05876 short chain dehydrogenase; Provisional
Probab=95.75 E-value=0.051 Score=44.97 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=50.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce-e--eCCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD-F--INPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~ 154 (269)
+++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+. ..+... . .|-.+ ..++.+.+.+... -
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRH--REEVTHLADEAFRLL 81 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCC--HHHHHHHHHHHHHHc
Confidence 4688999986 8999999998888999 8998988876555432 233321 1 22222 1223222222211 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|+++++.|.
T Consensus 82 g~id~li~nAg~ 93 (275)
T PRK05876 82 GHVDVVFSNAGI 93 (275)
T ss_pred CCCCEEEECCCc
Confidence 268999998873
No 391
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=95.75 E-value=0.059 Score=43.94 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=32.5
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHH
Q 024295 85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEK 124 (269)
Q Consensus 85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~ 124 (269)
++++||+|+ |.+|.+.+..+...|+ +|+.++++.++.+.
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~ 41 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAAN 41 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 468999986 8999999988888899 99999988765543
No 392
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.75 E-value=0.074 Score=44.04 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=63.2
Q ss_pred CCCeEEEEcC---ChhHHHHHHHHHHcCCCeEEEEcCCcc---hHHHH-HhCCCcee--eCCCCCCCccHHHHHHhhhC-
Q 024295 84 KGSSVAVLGL---GTVGLGAVDGARMHGAAKIIGIDKNPW---KKEKG-KAFGMTDF--INPDDEPNKSISELVKGITH- 153 (269)
Q Consensus 84 ~~~~vlI~G~---g~~G~~a~~la~~~g~~~v~~~~~~~~---~~~~~-~~~g~~~v--~~~~~~~~~~~~~~i~~~~~- 153 (269)
.++++||+|+ +++|.+.++.+...|+ +|+.++++++ +.+.+ ++++.... .|-.+ .+...+.+.+...
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSDYVYELDVSK--PEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCceEEEecCCC--HHHHHHHHHHHHHH
Confidence 4688999985 4899999988888999 8988888743 22322 33443222 23332 2233333333322
Q ss_pred CCCccEEEEccCCh--------------h---------------HHHHHHHHcccCCcEEEEEccCC
Q 024295 154 GMGVDYCFECTGVP--------------S---------------LLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 154 ~~~~d~v~d~~g~~--------------~---------------~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
-..+|++++++|.. . ..+..+..+..+ |+++.++...
T Consensus 81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-g~Iv~isS~~ 146 (274)
T PRK08415 81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG-ASVLTLSYLG 146 (274)
T ss_pred cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC-CcEEEEecCC
Confidence 12799999998731 0 123455566674 8998887543
No 393
>PRK06398 aldose dehydrogenase; Validated
Probab=95.75 E-value=0.013 Score=48.04 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=47.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhC-CCCccEEE
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITH-GMGVDYCF 161 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~-~~~~d~v~ 161 (269)
+++++||+|+ |.+|.+.+..+...|+ +|+.+++++++...+. ....|-.+ +....+.+.+... -..+|+++
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~----~~~~D~~~--~~~i~~~~~~~~~~~~~id~li 77 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYNDVD----YFKVDVSN--KEQVIKGIDYVISKYGRIDILV 77 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccCceE----EEEccCCC--HHHHHHHHHHHHHHcCCCCEEE
Confidence 4689999986 8999999999998999 9999988764432110 11123322 1233333333221 12699999
Q ss_pred EccCC
Q 024295 162 ECTGV 166 (269)
Q Consensus 162 d~~g~ 166 (269)
++.|.
T Consensus 78 ~~Ag~ 82 (258)
T PRK06398 78 NNAGI 82 (258)
T ss_pred ECCCC
Confidence 98863
No 394
>PRK06114 short chain dehydrogenase; Provisional
Probab=95.74 E-value=0.087 Score=42.88 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=49.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch-HHH----HHhCCCc-eee--CCCCCCCccHHHHHHhhhC-
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK-KEK----GKAFGMT-DFI--NPDDEPNKSISELVKGITH- 153 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~-~~~----~~~~g~~-~v~--~~~~~~~~~~~~~i~~~~~- 153 (269)
+++++||+|+ |.+|.+.++.+...|+ +|+.+++++++ .+. ++..+.. ..+ |-.+ +....+.+.+...
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~ 83 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTS--KADLRAAVARTEAE 83 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence 4688999986 8999999999888999 89988876532 222 2223422 122 2222 2233333333211
Q ss_pred CCCccEEEEccCC
Q 024295 154 GMGVDYCFECTGV 166 (269)
Q Consensus 154 ~~~~d~v~d~~g~ 166 (269)
-..+|+++++.|.
T Consensus 84 ~g~id~li~~ag~ 96 (254)
T PRK06114 84 LGALTLAVNAAGI 96 (254)
T ss_pred cCCCCEEEECCCC
Confidence 1278999999874
No 395
>PRK09242 tropinone reductase; Provisional
Probab=95.74 E-value=0.081 Score=43.08 Aligned_cols=80 Identities=11% Similarity=0.139 Sum_probs=50.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----C--CCc-ee--eCCCCCCCccHHHHHHhhhC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----F--GMT-DF--INPDDEPNKSISELVKGITH 153 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~--g~~-~v--~~~~~~~~~~~~~~i~~~~~ 153 (269)
.++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+.+ . +.. .. .|..+ ..+..+.+.+...
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~ 84 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSD--DEDRRAILDWVED 84 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC--HHHHHHHHHHHHH
Confidence 4789999986 8999999999988999 89999988766554322 1 221 11 23222 1223332332211
Q ss_pred -CCCccEEEEccCC
Q 024295 154 -GMGVDYCFECTGV 166 (269)
Q Consensus 154 -~~~~d~v~d~~g~ 166 (269)
-.++|+++.+.|.
T Consensus 85 ~~g~id~li~~ag~ 98 (257)
T PRK09242 85 HWDGLHILVNNAGG 98 (257)
T ss_pred HcCCCCEEEECCCC
Confidence 1279999999974
No 396
>PRK06482 short chain dehydrogenase; Provisional
Probab=95.73 E-value=0.069 Score=44.04 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=50.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc-e--eeCCCCCCCccHHHHHHhhh-CCCCccE
Q 024295 86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT-D--FINPDDEPNKSISELVKGIT-HGMGVDY 159 (269)
Q Consensus 86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~--v~~~~~~~~~~~~~~i~~~~-~~~~~d~ 159 (269)
+++||+|+ |.+|...++.+...|+ +|+++++++++.+.+++ .+.. . ..|..+ ...+.+.+.+.. ...++|+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~ 79 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARYGDRLWVLQLDVTD--SAAVRAVVDRAFAALGRIDV 79 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCceEEEEccCCC--HHHHHHHHHHHHHHcCCCCE
Confidence 57999986 9999999888888899 99999998877766544 2221 1 123222 122333333321 1137899
Q ss_pred EEEccCC
Q 024295 160 CFECTGV 166 (269)
Q Consensus 160 v~d~~g~ 166 (269)
+|.++|.
T Consensus 80 vi~~ag~ 86 (276)
T PRK06482 80 VVSNAGY 86 (276)
T ss_pred EEECCCC
Confidence 9998864
No 397
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.73 E-value=0.058 Score=43.76 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=49.7
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCce-e--eCCCCCCCccHHHHHHhhhC-CCCccEE
Q 024295 87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTD-F--INPDDEPNKSISELVKGITH-GMGVDYC 160 (269)
Q Consensus 87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~~d~v 160 (269)
+++|+|+ |.+|.+.+..+...|+ +|+++++++++.+.+.. ++... . .|-.+ ...+.+.+.+... ..++|.+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~~~~id~v 78 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN--RAAIEEMLASLPAEWRNIDVL 78 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEEecCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence 5899986 9999999999888899 89999998877666543 34321 1 22222 1223333332221 1279999
Q ss_pred EEccCC
Q 024295 161 FECTGV 166 (269)
Q Consensus 161 ~d~~g~ 166 (269)
+.++|.
T Consensus 79 i~~ag~ 84 (248)
T PRK10538 79 VNNAGL 84 (248)
T ss_pred EECCCc
Confidence 998864
No 398
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.72 E-value=0.045 Score=45.50 Aligned_cols=44 Identities=25% Similarity=0.232 Sum_probs=37.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA 127 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~ 127 (269)
++++++|+|+|+.+.+++..+...|+++++++.|+.+|.+.+.+
T Consensus 126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 46889999999999999888888999899999999887766543
No 399
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.71 E-value=0.14 Score=45.46 Aligned_cols=103 Identities=19% Similarity=0.310 Sum_probs=63.9
Q ss_pred hcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCce--eeCCCCCCCccHHHHHHhh
Q 024295 79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTD--FINPDDEPNKSISELVKGI 151 (269)
Q Consensus 79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~~~ 151 (269)
....+++++||-+|+|+ |.-+..+++.++. .+|++++.++++.+.+++ +|.+. ++..+. ..+.... ..
T Consensus 247 ~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~---~~~~~~~-~~ 321 (434)
T PRK14901 247 LLDPQPGEVILDACAAP-GGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADS---RNLLELK-PQ 321 (434)
T ss_pred HhCCCCcCEEEEeCCCC-chhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCCh---hhccccc-cc
Confidence 45678899999998876 6666667776542 389999999988877644 56543 222211 1111000 01
Q ss_pred hCCCCccEEE-E--ccCC-------------------------hhHHHHHHHHcccCCcEEEEEc
Q 024295 152 THGMGVDYCF-E--CTGV-------------------------PSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 152 ~~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g 188 (269)
..+ .||.|+ | |+|. ...+..+++.+++| |+++..-
T Consensus 322 ~~~-~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg-G~lvyst 384 (434)
T PRK14901 322 WRG-YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG-GTLVYAT 384 (434)
T ss_pred ccc-cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence 112 799886 4 3431 12477888999996 9987653
No 400
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=95.71 E-value=0.05 Score=48.87 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=65.3
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC--CCceeeCCCCCCCccHHHHHHhhhCCC
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF--GMTDFINPDDEPNKSISELVKGITHGM 155 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~--g~~~v~~~~~~~~~~~~~~i~~~~~~~ 155 (269)
....++++.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++. +...-+.... .++.+ ...+..
T Consensus 260 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~---~d~~~---~~~~~~ 331 (475)
T PLN02336 260 DKLDLKPGQKVLDVGCGI-GGGDFYMAENFDV-HVVGIDLSVNMISFALERAIGRKCSVEFEV---ADCTK---KTYPDN 331 (475)
T ss_pred HhcCCCCCCEEEEEeccC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhhcCCCceEEEE---cCccc---CCCCCC
Confidence 344567889999999876 7777888887788 999999998888777552 2110011000 11100 001223
Q ss_pred CccEEEEcc-----C-ChhHHHHHHHHcccCCcEEEEEc
Q 024295 156 GVDYCFECT-----G-VPSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 156 ~~d~v~d~~-----g-~~~~~~~~~~~l~~~~G~~v~~g 188 (269)
.||+|+..- . ....+..+.+.+++| |+++...
T Consensus 332 ~fD~I~s~~~l~h~~d~~~~l~~~~r~Lkpg-G~l~i~~ 369 (475)
T PLN02336 332 SFDVIYSRDTILHIQDKPALFRSFFKWLKPG-GKVLISD 369 (475)
T ss_pred CEEEEEECCcccccCCHHHHHHHHHHHcCCC-eEEEEEE
Confidence 799997531 1 234678999999997 9987764
No 401
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=95.71 E-value=0.17 Score=45.12 Aligned_cols=100 Identities=27% Similarity=0.311 Sum_probs=63.5
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCce--eeCCCCCCCccHHHHHHh
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTD--FINPDDEPNKSISELVKG 150 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~~ 150 (269)
.....+++++||-+|+|+ |..+..+++.++ ..+|++++.++++.+.+++ .|... ++..+. ..
T Consensus 244 ~~l~~~~g~~VLDlgaG~-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da---~~------- 312 (445)
T PRK14904 244 LLLNPQPGSTVLDLCAAP-GGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDA---RS------- 312 (445)
T ss_pred HhcCCCCCCEEEEECCCC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcc---cc-------
Confidence 345677899999998876 555556666542 2389999999988876654 56442 222111 11
Q ss_pred hhCCCCccEEE-E--ccCCh-------------------------hHHHHHHHHcccCCcEEEEEcc
Q 024295 151 ITHGMGVDYCF-E--CTGVP-------------------------SLLSEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 151 ~~~~~~~d~v~-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~ 189 (269)
+.....||.|+ | |+|.. ..+..+++.+++| |+++....
T Consensus 313 ~~~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg-G~lvystc 378 (445)
T PRK14904 313 FSPEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG-GVLVYATC 378 (445)
T ss_pred cccCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEeC
Confidence 11223799887 3 44421 2477888899996 99887643
No 402
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.71 E-value=0.1 Score=37.59 Aligned_cols=93 Identities=20% Similarity=0.312 Sum_probs=51.1
Q ss_pred eEEEEcC-ChhHHHHHHHHHH-cCCCeEEEEcCCcc---hHHHHHhCCCc--eeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295 87 SVAVLGL-GTVGLGAVDGARM-HGAAKIIGIDKNPW---KKEKGKAFGMT--DFINPDDEPNKSISELVKGITHGMGVDY 159 (269)
Q Consensus 87 ~vlI~G~-g~~G~~a~~la~~-~g~~~v~~~~~~~~---~~~~~~~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~ 159 (269)
+|.|+|+ |.+|...++.+.. .+.+-+-+++++++ ..+.-.-.|.. .+..+ .++ .+... ..|+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~-----~~l----~~~~~--~~DV 70 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT-----DDL----EELLE--EADV 70 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB-----S-H----HHHTT--H-SE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc-----hhH----HHhcc--cCCE
Confidence 5889998 9999999999997 57734455555441 11111111111 11001 222 22222 3899
Q ss_pred EEEccCChhHHHHHHHHcccCCcEEEEEccCCC
Q 024295 160 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVD 192 (269)
Q Consensus 160 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~ 192 (269)
++|++ .+......++.+.. .|.-+.+|.+..
T Consensus 71 vIDfT-~p~~~~~~~~~~~~-~g~~~ViGTTG~ 101 (124)
T PF01113_consen 71 VIDFT-NPDAVYDNLEYALK-HGVPLVIGTTGF 101 (124)
T ss_dssp EEEES--HHHHHHHHHHHHH-HT-EEEEE-SSS
T ss_pred EEEcC-ChHHhHHHHHHHHh-CCCCEEEECCCC
Confidence 99999 45566666776666 377777776653
No 403
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.70 E-value=0.085 Score=42.06 Aligned_cols=92 Identities=13% Similarity=0.006 Sum_probs=55.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc-chHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP-WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE 162 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d 162 (269)
++.+|||+|+|.++.-=+..+...|+ +|+++...- +....+...|.-..+. ++ +... ++ .++++||-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~el~~l~~~~~i~~~~-r~-----~~~~--dl---~g~~LVia 91 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSKEFLDLKKYGNLKLIK-GN-----YDKE--FI---KDKHLIVI 91 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCHHHHHHHhCCCEEEEe-CC-----CChH--Hh---CCCcEEEE
Confidence 46789999999999887777778899 888886442 1222222233222221 11 1111 11 27899999
Q ss_pred ccCChhHHHHHHHHcccCCcEEEEEc
Q 024295 163 CTGVPSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 163 ~~g~~~~~~~~~~~l~~~~G~~v~~g 188 (269)
|++.+..-..+....+.. +.++...
T Consensus 92 ATdD~~vN~~I~~~a~~~-~~lvn~v 116 (223)
T PRK05562 92 ATDDEKLNNKIRKHCDRL-YKLYIDC 116 (223)
T ss_pred CCCCHHHHHHHHHHHHHc-CCeEEEc
Confidence 998875545555555553 6555553
No 404
>PRK08263 short chain dehydrogenase; Provisional
Probab=95.69 E-value=0.076 Score=43.83 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=50.1
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc-eee--CCCCCCCccHHHHHHhhhC-CCCcc
Q 024295 85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT-DFI--NPDDEPNKSISELVKGITH-GMGVD 158 (269)
Q Consensus 85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~v~--~~~~~~~~~~~~~i~~~~~-~~~~d 158 (269)
++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+.+ .+.. ..+ |..+ +..+.+.+.+... -.++|
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~d 79 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAEKYGDRLLPLALDVTD--RAAVFAAVETAVEHFGRLD 79 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhccCCeeEEEccCCC--HHHHHHHHHHHHHHcCCCC
Confidence 467999986 9999999888888898 89999998877665544 2211 122 2221 1223222332211 12789
Q ss_pred EEEEccCC
Q 024295 159 YCFECTGV 166 (269)
Q Consensus 159 ~v~d~~g~ 166 (269)
.++.++|.
T Consensus 80 ~vi~~ag~ 87 (275)
T PRK08263 80 IVVNNAGY 87 (275)
T ss_pred EEEECCCC
Confidence 99999874
No 405
>PLN02928 oxidoreductase family protein
Probab=95.69 E-value=0.11 Score=44.56 Aligned_cols=97 Identities=21% Similarity=0.353 Sum_probs=59.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC-----CceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG-----MTDFINPDDEPNKSISELVKGITHGMGVD 158 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g-----~~~v~~~~~~~~~~~~~~i~~~~~~~~~d 158 (269)
.|+++.|+|.|.+|..+++.++..|. +|++.+++..+... ..++ .....+... ...++.+.+. ..|
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~L~ell~------~aD 228 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPE-DGLLIPNGDVDDLVDEKG-GHEDIYEFAG------EAD 228 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhhh-hhhccccccccccccccC-cccCHHHHHh------hCC
Confidence 57899999999999999999999999 99999876332111 1110 000010000 0123333332 568
Q ss_pred EEEEccCChhH-----HHHHHHHcccCCcEEEEEccC
Q 024295 159 YCFECTGVPSL-----LSEALETTKVGKGKVIVIGVG 190 (269)
Q Consensus 159 ~v~d~~g~~~~-----~~~~~~~l~~~~G~~v~~g~~ 190 (269)
+|+.++...+. -...+..++++ ..+|.++..
T Consensus 229 iVvl~lPlt~~T~~li~~~~l~~Mk~g-a~lINvaRG 264 (347)
T PLN02928 229 IVVLCCTLTKETAGIVNDEFLSSMKKG-ALLVNIARG 264 (347)
T ss_pred EEEECCCCChHhhcccCHHHHhcCCCC-eEEEECCCc
Confidence 88887743221 24667788885 888887744
No 406
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=95.68 E-value=0.1 Score=42.43 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=50.5
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DF--INPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~ 154 (269)
.++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+ +..+.. .. .|-.+ .+.+.+.+.+... -
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTH--KQEVEAAIEHIEKDI 84 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCC--HHHHHHHHHHHHHhc
Confidence 4688999986 8999999988888899 999999887655443 222322 12 22222 2233333332211 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|+++.+.|.
T Consensus 85 ~~id~vi~~ag~ 96 (254)
T PRK08085 85 GPIDVLINNAGI 96 (254)
T ss_pred CCCCEEEECCCc
Confidence 279999998874
No 407
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=95.68 E-value=0.24 Score=38.72 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=63.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKGITHGMGV 157 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~ 157 (269)
+...+|-+|+|. |..+..+++.....++++++.+++..+.+++ .+.. .++. .+..+......+...+
T Consensus 16 ~~~~ilDiGcG~-G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~------~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 16 KAPLHLEIGCGK-GRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLC------GDANELLDKFFPDGSL 88 (194)
T ss_pred CCceEEEeCCCc-cHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEc------cCHHHHHHhhCCCCce
Confidence 456788889987 8888889987644499999998877666543 2322 2222 3333333333333368
Q ss_pred cEEEEccCC--------------hhHHHHHHHHcccCCcEEEEEcc
Q 024295 158 DYCFECTGV--------------PSLLSEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 158 d~v~d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g~ 189 (269)
|.++-.... +..+..+.+.|++| |.+.....
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg-G~l~~~td 133 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKG-GVIHFKTD 133 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCC-CEEEEEeC
Confidence 888654322 23578899999997 99877643
No 408
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=95.67 E-value=0.066 Score=45.38 Aligned_cols=79 Identities=23% Similarity=0.246 Sum_probs=49.9
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCC---Cc-ee--eCCCCCCCccHHHHHHhhh-CC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFG---MT-DF--INPDDEPNKSISELVKGIT-HG 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g---~~-~v--~~~~~~~~~~~~~~i~~~~-~~ 154 (269)
+++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+. ++. .. .. .|-.+ .....+.+.+.. ..
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGD--LDSVRRFVDDFRALG 81 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCC--HHHHHHHHHHHHHhC
Confidence 4678999986 8999999888888898 9999998877665442 232 11 11 23222 122222232221 12
Q ss_pred CCccEEEEccC
Q 024295 155 MGVDYCFECTG 165 (269)
Q Consensus 155 ~~~d~v~d~~g 165 (269)
..+|++++++|
T Consensus 82 ~~iD~li~nAg 92 (322)
T PRK07453 82 KPLDALVCNAA 92 (322)
T ss_pred CCccEEEECCc
Confidence 36999999887
No 409
>PRK09186 flagellin modification protein A; Provisional
Probab=95.67 E-value=0.085 Score=42.85 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=50.3
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhC----CCc---e-eeCCCCCCCccHHHHHHhhhC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAF----GMT---D-FINPDDEPNKSISELVKGITH 153 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~----g~~---~-v~~~~~~~~~~~~~~i~~~~~ 153 (269)
+++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+ +++ +.. . ..|-.+ ++.+.+.+.+...
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~ 79 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD--QESLEEFLSKSAE 79 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC--HHHHHHHHHHHHH
Confidence 4688999986 8999999988888899 899999887765543 222 211 1 223332 2333333333211
Q ss_pred -CCCccEEEEccC
Q 024295 154 -GMGVDYCFECTG 165 (269)
Q Consensus 154 -~~~~d~v~d~~g 165 (269)
-.++|+++++.+
T Consensus 80 ~~~~id~vi~~A~ 92 (256)
T PRK09186 80 KYGKIDGAVNCAY 92 (256)
T ss_pred HcCCccEEEECCc
Confidence 126899999875
No 410
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=95.66 E-value=0.039 Score=44.98 Aligned_cols=98 Identities=20% Similarity=0.225 Sum_probs=61.8
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHc---CCCeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhhhCC
Q 024295 82 VEKGSSVAVLGLGTVGLGAVDGARMH---GAAKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGITHG 154 (269)
Q Consensus 82 ~~~~~~vlI~G~g~~G~~a~~la~~~---g~~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~~ 154 (269)
+.++.+||.+|+|. |..+..+++.. +. ++++++.+++..+.+++. +...-+.... .++. +....
T Consensus 54 ~~~~~~vLDlGcGt-G~~~~~l~~~~~~~~~-~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~---~d~~----~~~~~ 124 (247)
T PRK15451 54 VQPGTQVYDLGCSL-GAATLSVRRNIHHDNC-KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE---GDIR----DIAIE 124 (247)
T ss_pred CCCCCEEEEEcccC-CHHHHHHHHhcCCCCC-eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEe---CChh----hCCCC
Confidence 56788999999876 77777777742 45 999999999888877652 2211111111 2221 11112
Q ss_pred CCccEEEEcc-----CC---hhHHHHHHHHcccCCcEEEEEccC
Q 024295 155 MGVDYCFECT-----GV---PSLLSEALETTKVGKGKVIVIGVG 190 (269)
Q Consensus 155 ~~~d~v~d~~-----g~---~~~~~~~~~~l~~~~G~~v~~g~~ 190 (269)
.+|+++-.. .. ...+..+.+.|++| |.++.....
T Consensus 125 -~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpG-G~l~l~e~~ 166 (247)
T PRK15451 125 -NASMVVLNFTLQFLEPSERQALLDKIYQGLNPG-GALVLSEKF 166 (247)
T ss_pred -CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCC-CEEEEEEec
Confidence 577776432 11 23678999999997 999887643
No 411
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=95.65 E-value=0.054 Score=43.77 Aligned_cols=80 Identities=18% Similarity=0.133 Sum_probs=49.1
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-eee--CCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DFI--NPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v~--~~~~~~~~~~~~~i~~~~~-~ 154 (269)
.++++||+|+ |.+|...+..+...|+ +|++++++.++...+ +..+.. .++ |..+ ...+.+.+.+... -
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRD--RAALKAAVAAGVEDF 81 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHh
Confidence 4678999986 9999999888888899 999999886544332 223321 122 2222 1223333322211 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
..+|.++.+.+.
T Consensus 82 ~~~d~vi~~ag~ 93 (251)
T PRK12826 82 GRLDILVANAGI 93 (251)
T ss_pred CCCCEEEECCCC
Confidence 268999998854
No 412
>PRK08589 short chain dehydrogenase; Validated
Probab=95.65 E-value=0.068 Score=44.09 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=48.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHh---CCCc-e--eeCCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEK-GKA---FGMT-D--FINPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~-~~~---~g~~-~--v~~~~~~~~~~~~~~i~~~~~-~ 154 (269)
+++++||+|+ +.+|.+.++.+...|+ +|++++++ ++.+. +++ .+.. . ..|-.+ +......+.+... -
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISD--EQQVKDFASEIKEQF 80 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCC--HHHHHHHHHHHHHHc
Confidence 4789999986 8999999888888899 99999988 43332 322 2321 1 223322 1223333333221 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
..+|++++++|.
T Consensus 81 g~id~li~~Ag~ 92 (272)
T PRK08589 81 GRVDVLFNNAGV 92 (272)
T ss_pred CCcCEEEECCCC
Confidence 268999998864
No 413
>PRK08251 short chain dehydrogenase; Provisional
Probab=95.64 E-value=0.095 Score=42.36 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=49.0
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----C--CCc-eee--CCCCCCCccHHHHHHhhhC-
Q 024295 85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----F--GMT-DFI--NPDDEPNKSISELVKGITH- 153 (269)
Q Consensus 85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~--g~~-~v~--~~~~~~~~~~~~~i~~~~~- 153 (269)
++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+.. . +.. +++ |..+ ...+.+.+.++..
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~ 78 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVND--HDQVFEVFAEFRDE 78 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence 468999986 9999988887777898 89999988876654432 1 211 122 3332 2233333333321
Q ss_pred CCCccEEEEccC
Q 024295 154 GMGVDYCFECTG 165 (269)
Q Consensus 154 ~~~~d~v~d~~g 165 (269)
-.++|+++.+.|
T Consensus 79 ~~~id~vi~~ag 90 (248)
T PRK08251 79 LGGLDRVIVNAG 90 (248)
T ss_pred cCCCCEEEECCC
Confidence 127999999886
No 414
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=95.64 E-value=0.15 Score=40.73 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=60.2
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCcee---------eCCCCCCCccHHHHHHh
Q 024295 81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDF---------INPDDEPNKSISELVKG 150 (269)
Q Consensus 81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v---------~~~~~~~~~~~~~~i~~ 150 (269)
.+.++.+||+.|+|. |.-+..||. .|. +|++++.++.-.+.+ ++.+.... ....+ ..-+...+.+
T Consensus 34 ~~~~~~rvL~~gCG~-G~da~~LA~-~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~--v~~~~~D~~~ 108 (218)
T PRK13255 34 ALPAGSRVLVPLCGK-SLDMLWLAE-QGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGE--ITIYCGDFFA 108 (218)
T ss_pred CCCCCCeEEEeCCCC-hHhHHHHHh-CCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCc--eEEEECcccC
Confidence 455678999999986 888888875 699 999999998877754 33332100 00000 0000000111
Q ss_pred hh--CCCCccEEEEccC--------ChhHHHHHHHHcccCCcEEEEE
Q 024295 151 IT--HGMGVDYCFECTG--------VPSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 151 ~~--~~~~~d~v~d~~g--------~~~~~~~~~~~l~~~~G~~v~~ 187 (269)
+. ....||.|+|..- .+..+..+.+.|++| |+++++
T Consensus 109 l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg-G~~~l~ 154 (218)
T PRK13255 109 LTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG-CRGLLV 154 (218)
T ss_pred CCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC-CeEEEE
Confidence 11 1126899998652 123478888999996 875543
No 415
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.64 E-value=0.31 Score=41.34 Aligned_cols=39 Identities=28% Similarity=0.433 Sum_probs=33.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 024295 86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG 125 (269)
Q Consensus 86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~ 125 (269)
++|.|+|+|.+|...++.+...|. +|+..+++++..+.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~ 46 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAAL 46 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHH
Confidence 679999999999998888888899 999999988765543
No 416
>PRK07832 short chain dehydrogenase; Provisional
Probab=95.64 E-value=0.12 Score=42.67 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=47.7
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc--e--eeCCCCCCCccHHHHHHhhhC-CCC
Q 024295 87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT--D--FINPDDEPNKSISELVKGITH-GMG 156 (269)
Q Consensus 87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~--~--v~~~~~~~~~~~~~~i~~~~~-~~~ 156 (269)
+++|+|+ |++|..+++.+...|+ +|+.+++++++.+.+ +..+.. . ..|-.+ +....+.+.+... ..+
T Consensus 2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~ 78 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISD--YDAVAAFAADIHAAHGS 78 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC--HHHHHHHHHHHHHhcCC
Confidence 6899986 8999999998888899 899998887654433 223322 1 233332 1222222222211 126
Q ss_pred ccEEEEccCC
Q 024295 157 VDYCFECTGV 166 (269)
Q Consensus 157 ~d~v~d~~g~ 166 (269)
+|+++++.|.
T Consensus 79 id~lv~~ag~ 88 (272)
T PRK07832 79 MDVVMNIAGI 88 (272)
T ss_pred CCEEEECCCC
Confidence 9999999874
No 417
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=95.63 E-value=0.13 Score=45.77 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=63.2
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhh
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGIT 152 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~ 152 (269)
....++++++||-+|+|+ |..+..+++..+ ..+|++++.++++.+.+++ .|.+. +.... .+..+....+
T Consensus 244 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~---~D~~~~~~~~- 317 (444)
T PRK14902 244 PALDPKGGDTVLDACAAP-GGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKA---LDARKVHEKF- 317 (444)
T ss_pred HHhCCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEe---CCcccccchh-
Confidence 345678899999998876 666667777652 3389999999988776654 55443 11111 1111111111
Q ss_pred CCCCccEEE-E--ccCC-------------------------hhHHHHHHHHcccCCcEEEEEc
Q 024295 153 HGMGVDYCF-E--CTGV-------------------------PSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 153 ~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g 188 (269)
. ..||.|+ | |.|. ...+..+++.+++| |+++...
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG-G~lvyst 379 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG-GILVYST 379 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEc
Confidence 1 2799886 4 3322 12467788899997 9998643
No 418
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=95.63 E-value=0.18 Score=41.98 Aligned_cols=109 Identities=14% Similarity=0.086 Sum_probs=71.3
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC----C-ceeeCCCC-CCCccHHHHHHhhhCCC
Q 024295 83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG----M-TDFINPDD-EPNKSISELVKGITHGM 155 (269)
Q Consensus 83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g----~-~~v~~~~~-~~~~~~~~~i~~~~~~~ 155 (269)
.+++.|||+|+ ++.|..++.-+...|. +|++.+-.++..+.++..- . +..+|-.+ .+.....+.+++..++.
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf-~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~ 105 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKKGF-RVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGED 105 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhcCC-EEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcccc
Confidence 35678999997 9999988888888899 9999997777766654421 1 22333222 01222333444555666
Q ss_pred CccEEEEccCCh--------------------------hHHHHHHHHcccCCcEEEEEccCCC
Q 024295 156 GVDYCFECTGVP--------------------------SLLSEALETTKVGKGKVIVIGVGVD 192 (269)
Q Consensus 156 ~~d~v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~~~ 192 (269)
+.=-++|++|.. ......+.++++..||+|.++...+
T Consensus 106 gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~G 168 (322)
T KOG1610|consen 106 GLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLG 168 (322)
T ss_pred cceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEeccccc
Confidence 788888888721 1234556667765699999987765
No 419
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.63 E-value=0.034 Score=41.46 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=56.1
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCC---CCccHHHHHHhhhCCCCccEEEEcc
Q 024295 88 VAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDE---PNKSISELVKGITHGMGVDYCFECT 164 (269)
Q Consensus 88 vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~~~~i~~~~~~~~~d~v~d~~ 164 (269)
|+|+|+|++|......++..|. +|..+.+++ +.+.+++.|........+. .+...... . .....+|++|-|+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~D~viv~v 75 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAP--S-ADAGPYDLVIVAV 75 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSH--G-HHHSTESEEEE-S
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcc--h-hccCCCcEEEEEe
Confidence 6899999999988888877888 999999887 7777766553211111000 00000000 0 1123899999999
Q ss_pred CChh---HHHHHHHHcccCCcEEEEEccC
Q 024295 165 GVPS---LLSEALETTKVGKGKVIVIGVG 190 (269)
Q Consensus 165 g~~~---~~~~~~~~l~~~~G~~v~~g~~ 190 (269)
-... .++.+...+.++ ..++.+-..
T Consensus 76 Ka~~~~~~l~~l~~~~~~~-t~iv~~qNG 103 (151)
T PF02558_consen 76 KAYQLEQALQSLKPYLDPN-TTIVSLQNG 103 (151)
T ss_dssp SGGGHHHHHHHHCTGEETT-EEEEEESSS
T ss_pred cccchHHHHHHHhhccCCC-cEEEEEeCC
Confidence 5542 233444444553 567776443
No 420
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.62 E-value=0.2 Score=41.87 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=48.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295 87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV 166 (269)
Q Consensus 87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~ 166 (269)
+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|... . .++.+.+. ..|+||.++..
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~g~~~-~-------~~~~e~~~------~~d~vi~~vp~ 68 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIAAGAET-A-------STAKAVAE------QCDVIITMLPN 68 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCee-c-------CCHHHHHh------cCCEEEEeCCC
Confidence 68899999999987777777888 8999999988887777766431 1 12222221 56888888765
Q ss_pred hhHHH
Q 024295 167 PSLLS 171 (269)
Q Consensus 167 ~~~~~ 171 (269)
+....
T Consensus 69 ~~~~~ 73 (296)
T PRK11559 69 SPHVK 73 (296)
T ss_pred HHHHH
Confidence 44433
No 421
>PRK06940 short chain dehydrogenase; Provisional
Probab=95.62 E-value=0.095 Score=43.34 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=48.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-eee--CCCCCCCccHHHHHHhhhCCCCc
Q 024295 85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-DFI--NPDDEPNKSISELVKGITHGMGV 157 (269)
Q Consensus 85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v~--~~~~~~~~~~~~~i~~~~~~~~~ 157 (269)
+++++|.|+|.+|.+.+..+. .|+ +|+.+++++++.+.+. ..+.. ..+ |-.+ .+...+.+.+...-.++
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSS--RESVKALAATAQTLGPV 77 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCC--HHHHHHHHHHHHhcCCC
Confidence 357888898899999888775 788 9999998876654332 22322 122 3322 23333333332111279
Q ss_pred cEEEEccCC
Q 024295 158 DYCFECTGV 166 (269)
Q Consensus 158 d~v~d~~g~ 166 (269)
|++++++|.
T Consensus 78 d~li~nAG~ 86 (275)
T PRK06940 78 TGLVHTAGV 86 (275)
T ss_pred CEEEECCCc
Confidence 999999874
No 422
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=95.62 E-value=0.022 Score=47.62 Aligned_cols=33 Identities=33% Similarity=0.397 Sum_probs=27.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID 116 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~ 116 (269)
++.+|||+|+|++|.=|+|++.+.|+.++=.+|
T Consensus 65 k~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD 97 (427)
T KOG2017|consen 65 KNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVD 97 (427)
T ss_pred CCccEEEEccCCCCCHHHHHHHHcCCCeecccc
Confidence 468899999999999999999999986654444
No 423
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=95.62 E-value=0.065 Score=43.73 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=49.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---CCCce---eeCCCCCCCccHHHHHHhhhC-CC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA---FGMTD---FINPDDEPNKSISELVKGITH-GM 155 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~ 155 (269)
+++++||+|+ |.+|.+.++.+...|+ +|+.+++++...+..++ .+.+. ..|..+ .++..+.+.+... -.
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAAGGEALALTADLET--YAGAQAAMAAAVEAFG 83 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCC--HHHHHHHHHHHHHHcC
Confidence 4688999986 8999999998888899 89999987533333322 33321 223322 1223333333211 12
Q ss_pred CccEEEEccC
Q 024295 156 GVDYCFECTG 165 (269)
Q Consensus 156 ~~d~v~d~~g 165 (269)
++|++++++|
T Consensus 84 ~id~lv~nAg 93 (260)
T PRK12823 84 RIDVLINNVG 93 (260)
T ss_pred CCeEEEECCc
Confidence 7999999886
No 424
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=95.61 E-value=0.084 Score=42.99 Aligned_cols=80 Identities=21% Similarity=0.221 Sum_probs=48.3
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhCCCc-ee--eCCCCCCCccHHHHHHhhhC-CCC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW--KKEKGKAFGMT-DF--INPDDEPNKSISELVKGITH-GMG 156 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~--~~~~~~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~ 156 (269)
+++++||+|+ |.+|.+.++.+...|+ +|+.+++++. ..+.+++.+.. .. .|-.+ .++..+.+.+... ..+
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~ 85 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEPTETIEQVTALGRRFLSLTADLRK--IDGIPALLERAVAEFGH 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcchHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHhCC
Confidence 4688999986 8999999999988999 8888876532 22333344422 11 22221 1223333332211 127
Q ss_pred ccEEEEccCC
Q 024295 157 VDYCFECTGV 166 (269)
Q Consensus 157 ~d~v~d~~g~ 166 (269)
+|++++++|.
T Consensus 86 ~D~li~~Ag~ 95 (253)
T PRK08993 86 IDILVNNAGL 95 (253)
T ss_pred CCEEEECCCC
Confidence 9999998874
No 425
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.61 E-value=0.074 Score=45.82 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=31.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
.+.+|||+|+|++|..+++.+...|..+++.+|.+
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45789999999999999999999999999999865
No 426
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.61 E-value=0.096 Score=42.53 Aligned_cols=80 Identities=23% Similarity=0.219 Sum_probs=50.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-e--eeCCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-D--FINPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~--v~~~~~~~~~~~~~~i~~~~~-~ 154 (269)
+++++||+|+ |.+|...++.+...|+ +|+++++++++.+.+. ..+.. + ..|..+ +....+.+.+... .
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTD--EEAINAGIDYAVETF 79 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence 4578999985 9999999988888899 9999999877655432 22321 1 223222 1222222222211 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|+++.+++.
T Consensus 80 ~~~d~vi~~a~~ 91 (258)
T PRK12429 80 GGVDILVNNAGI 91 (258)
T ss_pred CCCCEEEECCCC
Confidence 279999998863
No 427
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.60 E-value=0.095 Score=42.63 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=51.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCC--ce-eeCCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGM--TD-FINPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~--~~-v~~~~~~~~~~~~~~i~~~~~-~ 154 (269)
++++++|+|+ |.+|...+..+...|+ +|+.+++++++.+.+ ++.+. .. ..|..+ +.++.+.+.+... -
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIAD--EEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHhc
Confidence 5789999986 8999999988888899 999999987655443 22332 11 123222 2333333333221 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
..+|.++.++|.
T Consensus 87 ~~id~vi~~ag~ 98 (256)
T PRK06124 87 GRLDILVNNVGA 98 (256)
T ss_pred CCCCEEEECCCC
Confidence 278999998874
No 428
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=95.60 E-value=0.043 Score=41.00 Aligned_cols=96 Identities=26% Similarity=0.330 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHhhhCC
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMH--GAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKGITHG 154 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~--g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~~~~~ 154 (269)
+++.+||-+|+|. |..+..+++.. +. +++++|.+++..+.+++ .+.+ .++.. ++.+ +....+
T Consensus 2 ~~~~~iLDlGcG~-G~~~~~l~~~~~~~~-~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~------d~~~-l~~~~~- 71 (152)
T PF13847_consen 2 KSNKKILDLGCGT-GRLLIQLAKELNPGA-KIIGVDISEEMIEYAKKRAKELGLDNIEFIQG------DIED-LPQELE- 71 (152)
T ss_dssp TTTSEEEEET-TT-SHHHHHHHHHSTTTS-EEEEEESSHHHHHHHHHHHHHTTSTTEEEEES------BTTC-GCGCSS-
T ss_pred CCCCEEEEecCcC-cHHHHHHHHhcCCCC-EEEEEECcHHHHHHhhcccccccccccceEEe------ehhc-cccccC-
Confidence 4678899999876 77788888544 44 99999999988888765 4543 22221 1111 111011
Q ss_pred CCccEEEEcc-----CC-hhHHHHHHHHcccCCcEEEEEcc
Q 024295 155 MGVDYCFECT-----GV-PSLLSEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 155 ~~~d~v~d~~-----g~-~~~~~~~~~~l~~~~G~~v~~g~ 189 (269)
..||+|+... .. ...++.+.+.++++ |.++....
T Consensus 72 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~-G~~i~~~~ 111 (152)
T PF13847_consen 72 EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPG-GILIISDP 111 (152)
T ss_dssp TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CCeeEEEEcCchhhccCHHHHHHHHHHHcCCC-cEEEEEEC
Confidence 3899998753 21 23578889999996 98876643
No 429
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=95.59 E-value=0.0091 Score=41.95 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=29.6
Q ss_pred ccccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEc
Q 024295 14 GLMLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKV 53 (269)
Q Consensus 14 ~~vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~v 53 (269)
-.+|+++.+|++ ||+|+... .+|+||||+.+++++++|+
T Consensus 44 ~~vG~~v~~~~~-Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 44 VAVGPGVTDFKV-GDRVVVSPNIGCGECEYCLSGRPNLCPNPEVLGLGLDGGFAEYVVVPARNLVPV 109 (109)
T ss_dssp EEESTTTTSSGT-T-EEEEESEEETSSSHHHHTTTGGGTTTBEETTTSSTCSSBSEEEEEGGGEEEE
T ss_pred eeeccccccccc-cceeeeecccCccCchhhcCCccccCCCCCEeEcCCCCcccCeEEEehHHEEEC
Confidence 345788888998 99986421 1399999999999999875
No 430
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.57 E-value=0.15 Score=43.32 Aligned_cols=95 Identities=19% Similarity=0.104 Sum_probs=62.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee------eCCCCCCCccHHHHHHhhhCCCCccE
Q 024295 86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF------INPDDEPNKSISELVKGITHGMGVDY 159 (269)
Q Consensus 86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v------~~~~~~~~~~~~~~i~~~~~~~~~d~ 159 (269)
-+|.|+|+|.+|.+....+...|. .|...++++++.+.++..+.... +..+-....+..+.+ ...|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~------~~aD~ 77 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEAL------AGADF 77 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH------cCCCE
Confidence 368999999999999888888888 89999998887776665321100 000000002222222 16899
Q ss_pred EEEccCChhHHHHHHHHcccCCcEEEEEcc
Q 024295 160 CFECTGVPSLLSEALETTKVGKGKVIVIGV 189 (269)
Q Consensus 160 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 189 (269)
|+-++... .+...++.++++ -.++.+..
T Consensus 78 Vi~~v~~~-~~~~v~~~l~~~-~~vi~~~~ 105 (328)
T PRK14618 78 AVVAVPSK-ALRETLAGLPRA-LGYVSCAK 105 (328)
T ss_pred EEEECchH-HHHHHHHhcCcC-CEEEEEee
Confidence 99999876 557788888884 56665543
No 431
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=95.56 E-value=0.073 Score=45.10 Aligned_cols=96 Identities=18% Similarity=0.145 Sum_probs=60.0
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC----CceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG----MTDFINPDDEPNKSISELVKGITHGMGVD 158 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g----~~~v~~~~~~~~~~~~~~i~~~~~~~~~d 158 (269)
.++.+||-+|+|. |..+..+++ .|+ +|+++|.+++..+.+++.. ...-+.+.. .+.. .+. . ....||
T Consensus 130 ~~g~~ILDIGCG~-G~~s~~La~-~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~---~dae-~l~-~-~~~~FD 200 (322)
T PLN02396 130 FEGLKFIDIGCGG-GLLSEPLAR-MGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLC---TTAE-KLA-D-EGRKFD 200 (322)
T ss_pred CCCCEEEEeeCCC-CHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEe---cCHH-Hhh-h-ccCCCC
Confidence 4677899999876 666666665 577 9999999998888886521 111111111 2221 121 1 123799
Q ss_pred EEEEc-----cC-ChhHHHHHHHHcccCCcEEEEEc
Q 024295 159 YCFEC-----TG-VPSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 159 ~v~d~-----~g-~~~~~~~~~~~l~~~~G~~v~~g 188 (269)
+|+-. +. ....+..+.+.+++| |.++..-
T Consensus 201 ~Vi~~~vLeHv~d~~~~L~~l~r~LkPG-G~liist 235 (322)
T PLN02396 201 AVLSLEVIEHVANPAEFCKSLSALTIPN-GATVLST 235 (322)
T ss_pred EEEEhhHHHhcCCHHHHHHHHHHHcCCC-cEEEEEE
Confidence 99632 22 233578888999997 9887663
No 432
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.56 E-value=0.11 Score=46.64 Aligned_cols=70 Identities=26% Similarity=0.322 Sum_probs=49.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc-----hHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW-----KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVD 158 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~-----~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d 158 (269)
.+++|+|+|+|.+|+.++.+++..|. +|++++++++ ..+.+++.|......... . . ..++|
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~---~--------~--~~~~D 80 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVRLGPGP---T--------L--PEDTD 80 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc---c--------c--cCCCC
Confidence 46789999999999999999999999 8999986542 223456677665443321 1 0 12678
Q ss_pred EEEEccCCh
Q 024295 159 YCFECTGVP 167 (269)
Q Consensus 159 ~v~d~~g~~ 167 (269)
+|+-+.|.+
T Consensus 81 ~Vv~s~Gi~ 89 (480)
T PRK01438 81 LVVTSPGWR 89 (480)
T ss_pred EEEECCCcC
Confidence 888887753
No 433
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=95.55 E-value=0.2 Score=44.40 Aligned_cols=102 Identities=16% Similarity=0.235 Sum_probs=64.2
Q ss_pred HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-eeeCCCCCCCccHHHHHHhhh
Q 024295 78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DFINPDDEPNKSISELVKGIT 152 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~ 152 (269)
....++++++||-+|+|+ |..+..+++..+..+|++++.++++.+.+++ +|.. .++..+. .+. ..+.
T Consensus 238 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~---~~~----~~~~ 309 (427)
T PRK10901 238 TLLAPQNGERVLDACAAP-GGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDA---RDP----AQWW 309 (427)
T ss_pred HHcCCCCCCEEEEeCCCC-ChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCc---ccc----hhhc
Confidence 345678999999998876 6666677776542399999999988877754 4432 2232221 111 1111
Q ss_pred CCCCccEEE-E--ccCC-------------------------hhHHHHHHHHcccCCcEEEEEc
Q 024295 153 HGMGVDYCF-E--CTGV-------------------------PSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 153 ~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g 188 (269)
....||.|+ | |.+. ...+..+.+.+++| |+++..-
T Consensus 310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG-G~lvyst 372 (427)
T PRK10901 310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG-GTLLYAT 372 (427)
T ss_pred ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence 223699887 3 3321 12567888899997 9988654
No 434
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.54 E-value=0.12 Score=41.40 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=53.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh--CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295 87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA--FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT 164 (269)
Q Consensus 87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~--~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~ 164 (269)
+++|+|+|.+|...++.+...|. .|+.+++++++.+.... +.. +++.-+ ..-.+.+++. +=..+|+++-++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~-~~v~gd----~t~~~~L~~a-gi~~aD~vva~t 74 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDT-HVVIGD----ATDEDVLEEA-GIDDADAVVAAT 74 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcce-EEEEec----CCCHHHHHhc-CCCcCCEEEEee
Confidence 57899999999999999999999 99999999988777333 443 333332 2222334443 334899999988
Q ss_pred CCh
Q 024295 165 GVP 167 (269)
Q Consensus 165 g~~ 167 (269)
|..
T Consensus 75 ~~d 77 (225)
T COG0569 75 GND 77 (225)
T ss_pred CCC
Confidence 874
No 435
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.54 E-value=0.11 Score=42.67 Aligned_cols=79 Identities=16% Similarity=0.244 Sum_probs=47.2
Q ss_pred CCCeEEEEcCC---hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceee--CCCCCCCccHHHHHHhhhCC
Q 024295 84 KGSSVAVLGLG---TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFI--NPDDEPNKSISELVKGITHG 154 (269)
Q Consensus 84 ~~~~vlI~G~g---~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~--~~~~~~~~~~~~~i~~~~~~ 154 (269)
+++++||+|++ ++|.+.++.+...|+ +|+.++++++..+.+++ .+....+ |-.+ +++..+.+.+....
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAE--DASIDAMFAELGKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhccCCceEeecCCCC--HHHHHHHHHHHHhh
Confidence 56889999863 799998888888899 88888776321222322 2221222 3222 23333333333221
Q ss_pred -CCccEEEEccC
Q 024295 155 -MGVDYCFECTG 165 (269)
Q Consensus 155 -~~~d~v~d~~g 165 (269)
..+|++++++|
T Consensus 82 ~g~iD~linnAg 93 (262)
T PRK07984 82 WPKFDGFVHSIG 93 (262)
T ss_pred cCCCCEEEECCc
Confidence 26999999986
No 436
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.53 E-value=0.25 Score=41.69 Aligned_cols=86 Identities=23% Similarity=0.276 Sum_probs=57.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC 163 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 163 (269)
++++|.|+|.|.+|.+.++.++..|. +|++..+.....+.++..|+. + .++.+.++ ..|+|+-+
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A~~~G~~-v--------~sl~Eaak------~ADVV~ll 78 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKADGFE-V--------MSVSEAVR------TAQVVQML 78 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHHHHcCCE-E--------CCHHHHHh------cCCEEEEe
Confidence 68999999999999999999999999 888887655555556666653 1 12222222 57899887
Q ss_pred cCChhH---H-HHHHHHcccCCcEEEEE
Q 024295 164 TGVPSL---L-SEALETTKVGKGKVIVI 187 (269)
Q Consensus 164 ~g~~~~---~-~~~~~~l~~~~G~~v~~ 187 (269)
+..+.. + ...+..++++ .++.+
T Consensus 79 LPd~~t~~V~~~eil~~MK~G--aiL~f 104 (335)
T PRK13403 79 LPDEQQAHVYKAEVEENLREG--QMLLF 104 (335)
T ss_pred CCChHHHHHHHHHHHhcCCCC--CEEEE
Confidence 765332 2 2355566774 44444
No 437
>PRK08278 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.068 Score=44.14 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=30.6
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW 120 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~ 120 (269)
+++++||+|+ |.+|...+..+...|+ +|++++++.+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~ 41 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAE 41 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccc
Confidence 4678999986 8999999888888899 9999988754
No 438
>PRK07856 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.079 Score=43.04 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=48.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce-eeCCCCCCCccHHHHHHhhhC-CCCccEE
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD-FINPDDEPNKSISELVKGITH-GMGVDYC 160 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~v 160 (269)
.++++||+|+ |.+|.+.++.+...|+ +|+.+++++++. ........ ..|..+ ...+.+.+.+... -..+|++
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~~--~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~v 79 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPET--VDGRPAEFHAADVRD--PDQVAALVDAIVERHGRLDVL 79 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhhh--hcCCceEEEEccCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence 4789999986 8999999998888899 999999876541 11111211 223222 1223333332211 1268999
Q ss_pred EEccCC
Q 024295 161 FECTGV 166 (269)
Q Consensus 161 ~d~~g~ 166 (269)
+.++|.
T Consensus 80 i~~ag~ 85 (252)
T PRK07856 80 VNNAGG 85 (252)
T ss_pred EECCCC
Confidence 998863
No 439
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.52 E-value=0.082 Score=43.05 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=63.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CC---------ceeeCCCCCCCccHHHHHHhhhC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GM---------TDFINPDDEPNKSISELVKGITH 153 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~---------~~v~~~~~~~~~~~~~~i~~~~~ 153 (269)
+.++|||+|.|. |..+-.+++....++|.+++.+++-.+.++++ +. -.++. .|-...+++...
T Consensus 76 ~p~~VLiiGgG~-G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~------~Dg~~~l~~~~~ 148 (246)
T PF01564_consen 76 NPKRVLIIGGGD-GGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIII------GDGRKFLKETQE 148 (246)
T ss_dssp ST-EEEEEESTT-SHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEE------STHHHHHHTSSS
T ss_pred CcCceEEEcCCC-hhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEE------hhhHHHHHhccC
Confidence 579999999765 66777888877677999999999888888773 21 11221 444455555433
Q ss_pred CCCccEEE-EccC---------ChhHHHHHHHHcccCCcEEEEEc
Q 024295 154 GMGVDYCF-ECTG---------VPSLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 154 ~~~~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g 188 (269)
+ .+|+|+ |... ....++.+.+.|+++ |.++.-.
T Consensus 149 ~-~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~-Gv~v~~~ 191 (246)
T PF01564_consen 149 E-KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD-GVLVLQA 191 (246)
T ss_dssp T--EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred C-cccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCC-cEEEEEc
Confidence 3 799886 5553 123578888999996 9988764
No 440
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.51 E-value=0.28 Score=41.50 Aligned_cols=102 Identities=17% Similarity=0.074 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCChhHHHHHHHHH-HcCCCeEEEEcCCcchHHHHHh-C---CCceeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGAR-MHGAAKIIGIDKNPWKKEKGKA-F---GMTDFINPDDEPNKSISELVKGITHGMGV 157 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~-~~g~~~v~~~~~~~~~~~~~~~-~---g~~~v~~~~~~~~~~~~~~i~~~~~~~~~ 157 (269)
...++++|+|+|..|...+..+. ..+.++|.+..|++++.+.+.+ + |.. +... .+..+.+ .+.
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~-~~~~-----~~~~~av------~~a 190 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFD-AEVV-----TDLEAAV------RQA 190 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCc-eEEe-----CCHHHHH------hcC
Confidence 45688999999999998876444 4676799999999887665433 3 321 1111 2222233 168
Q ss_pred cEEEEccCChhH-HHHHHHHcccCCcEEEEEccCCCccccchh
Q 024295 158 DYCFECTGVPSL-LSEALETTKVGKGKVIVIGVGVDAMVPLNV 199 (269)
Q Consensus 158 d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~ 199 (269)
|+|+.+++.+.. +. .+.++++ -++..+|.......+++.
T Consensus 191 DIVi~aT~s~~pvl~--~~~l~~g-~~i~~ig~~~~~~~El~~ 230 (314)
T PRK06141 191 DIISCATLSTEPLVR--GEWLKPG-THLDLVGNFTPDMRECDD 230 (314)
T ss_pred CEEEEeeCCCCCEec--HHHcCCC-CEEEeeCCCCcccccCCH
Confidence 999998876422 22 2567885 677677754433334443
No 441
>PLN02253 xanthoxin dehydrogenase
Probab=95.51 E-value=0.078 Score=43.82 Aligned_cols=80 Identities=20% Similarity=0.161 Sum_probs=49.1
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCC---cee--eCCCCCCCccHHHHHHhhhCC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGM---TDF--INPDDEPNKSISELVKGITHG-M 155 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~---~~v--~~~~~~~~~~~~~~i~~~~~~-~ 155 (269)
.++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+ .+++. ... .|-.+ .+...+.+.+.... .
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~~~g 93 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTV--EDDVSRAVDFTVDKFG 93 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCC--HHHHHHHHHHHHHHhC
Confidence 4678999986 8999998888888899 999998876554433 22321 111 23222 12233323322111 2
Q ss_pred CccEEEEccCC
Q 024295 156 GVDYCFECTGV 166 (269)
Q Consensus 156 ~~d~v~d~~g~ 166 (269)
++|++++++|.
T Consensus 94 ~id~li~~Ag~ 104 (280)
T PLN02253 94 TLDIMVNNAGL 104 (280)
T ss_pred CCCEEEECCCc
Confidence 69999998863
No 442
>PRK07074 short chain dehydrogenase; Provisional
Probab=95.51 E-value=0.096 Score=42.64 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=49.1
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CC---Cce-eeCCCCCCCccHHHHHHhhhC-CCCc
Q 024295 85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FG---MTD-FINPDDEPNKSISELVKGITH-GMGV 157 (269)
Q Consensus 85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g---~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~ 157 (269)
++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+ +. ... ..|..+ ...+...+.+... -.++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALGDARFVPVACDLTD--AASLAAALANAAAERGPV 78 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence 468999986 8999998888888898 89999988776654432 21 111 122222 1222223332211 1268
Q ss_pred cEEEEccCC
Q 024295 158 DYCFECTGV 166 (269)
Q Consensus 158 d~v~d~~g~ 166 (269)
|+++.+.|.
T Consensus 79 d~vi~~ag~ 87 (257)
T PRK07074 79 DVLVANAGA 87 (257)
T ss_pred CEEEECCCC
Confidence 999999864
No 443
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.49 E-value=0.11 Score=41.80 Aligned_cols=80 Identities=11% Similarity=0.224 Sum_probs=50.3
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce-ee--CCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD-FI--NPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-~ 154 (269)
.+.+++|+|+ |.+|...+..+...|+ +|+.+++++++.+.+ +..+... ++ |..+ +..+.+.+.+... -
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSD--YEEVTAAIEQLKNEL 82 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence 3578999986 8999999988888899 999999887655433 2223221 12 2221 2333333333221 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|+++.++|.
T Consensus 83 ~~id~vi~~ag~ 94 (239)
T PRK07666 83 GSIDILINNAGI 94 (239)
T ss_pred CCccEEEEcCcc
Confidence 378999998864
No 444
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.48 E-value=0.097 Score=44.09 Aligned_cols=95 Identities=12% Similarity=0.121 Sum_probs=55.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CCceeeCCCCCCCccHHHHHHhhh--CCCCccEEEEc
Q 024295 87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GMTDFINPDDEPNKSISELVKGIT--HGMGVDYCFEC 163 (269)
Q Consensus 87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~~i~~~~--~~~~~d~v~d~ 163 (269)
+|+|+|+|++|....-.+...|. .|+.+++.+++.+.+++. |.. +....+ .... .+...+ ....+|++|-|
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~-i~~~g~---~~~~-~~~~~~~~~~~~~D~viv~ 77 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLT-LVEQGQ---ASLY-AIPAETADAAEPIHRLLLA 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeE-EeeCCc---ceee-ccCCCCcccccccCEEEEE
Confidence 58999999999877666666788 899999887777766543 421 111111 0000 000000 11378999999
Q ss_pred cCChh---HHHHHHHHcccCCcEEEEEc
Q 024295 164 TGVPS---LLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 164 ~g~~~---~~~~~~~~l~~~~G~~v~~g 188 (269)
+=..+ .+..+...+.++ ..++.+-
T Consensus 78 vK~~~~~~al~~l~~~l~~~-t~vv~lQ 104 (305)
T PRK05708 78 CKAYDAEPAVASLAHRLAPG-AELLLLQ 104 (305)
T ss_pred CCHHhHHHHHHHHHhhCCCC-CEEEEEe
Confidence 84432 233444455664 6666653
No 445
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.47 E-value=0.12 Score=47.46 Aligned_cols=75 Identities=12% Similarity=0.127 Sum_probs=55.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295 86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG 165 (269)
Q Consensus 86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g 165 (269)
++++|.|.|.+|+..++.++..|. +++++|.++++.+.+++.|...+.-... -.+.+++ .+=..+|.++-+++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~GD~~-----~~~~L~~-a~i~~a~~viv~~~ 490 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVLGNAA-----NEEIMQL-AHLDCARWLLLTIP 490 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEEcCCC-----CHHHHHh-cCccccCEEEEEcC
Confidence 688999999999999999999998 9999999999999999988655543221 1222222 23237888887776
Q ss_pred Ch
Q 024295 166 VP 167 (269)
Q Consensus 166 ~~ 167 (269)
.+
T Consensus 491 ~~ 492 (558)
T PRK10669 491 NG 492 (558)
T ss_pred Ch
Confidence 54
No 446
>PRK03612 spermidine synthase; Provisional
Probab=95.47 E-value=0.18 Score=45.77 Aligned_cols=102 Identities=15% Similarity=0.149 Sum_probs=62.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC-C----ceeeCCCCC--CCccHHHHHHhhhCCC
Q 024295 83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG-M----TDFINPDDE--PNKSISELVKGITHGM 155 (269)
Q Consensus 83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g-~----~~v~~~~~~--~~~~~~~~i~~~~~~~ 155 (269)
.+.++||++|+|. |..+..+++.-..++|++++.+++-.+.+++.. . ...++..+- -..|..+.+++. + .
T Consensus 296 ~~~~rVL~IG~G~-G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~-~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGD-GLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-A-E 372 (521)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-C-C
Confidence 4568999999875 777777777544369999999999888888721 0 001111000 003333334332 3 3
Q ss_pred CccEEEEccCCh-----------hHHHHHHHHcccCCcEEEEEc
Q 024295 156 GVDYCFECTGVP-----------SLLSEALETTKVGKGKVIVIG 188 (269)
Q Consensus 156 ~~d~v~d~~g~~-----------~~~~~~~~~l~~~~G~~v~~g 188 (269)
.||+|+-....+ ..++.+.+.++++ |.++.-.
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pg-G~lv~~~ 415 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPD-GLLVVQS 415 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCC-eEEEEec
Confidence 899887433211 1456888899996 9988754
No 447
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.47 E-value=0.075 Score=43.34 Aligned_cols=79 Identities=20% Similarity=0.196 Sum_probs=48.6
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DF--INPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~ 154 (269)
.++++||+|+ |.+|.+.++.+...|+ +|+.++++ ++.+.+ .+.+.. .. .|-.+ .+.....+.+... .
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTK--PESAEKVVKEALEEF 89 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence 5789999986 8999999999988999 88888877 333322 223322 12 23222 1223223333221 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|+++.+.|.
T Consensus 90 g~id~li~~ag~ 101 (258)
T PRK06935 90 GKIDILVNNAGT 101 (258)
T ss_pred CCCCEEEECCCC
Confidence 278999998864
No 448
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.45 E-value=0.084 Score=39.77 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=54.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC------ceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295 87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM------TDFINPDDEPNKSISELVKGITHGMGVDYC 160 (269)
Q Consensus 87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~------~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v 160 (269)
+|.|+|+|+.|.+++..+...|. +|....++++..+.+++-+. +..+...-....++.+.++ +.|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~------~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE------DADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT------T-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC------cccEE
Confidence 58899999999999999999998 99999999887777765221 1111110000133444332 67999
Q ss_pred EEccCChhHHHHHHHHccc
Q 024295 161 FECTGVPSLLSEALETTKV 179 (269)
Q Consensus 161 ~d~~g~~~~~~~~~~~l~~ 179 (269)
+-++... .++..++.+++
T Consensus 74 iiavPs~-~~~~~~~~l~~ 91 (157)
T PF01210_consen 74 IIAVPSQ-AHREVLEQLAP 91 (157)
T ss_dssp EE-S-GG-GHHHHHHHHTT
T ss_pred EecccHH-HHHHHHHHHhh
Confidence 9988765 44556665554
No 449
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.44 E-value=0.12 Score=42.77 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=48.3
Q ss_pred CCCCeEEEEcC---ChhHHHHHHHHHHcCCCeEEEEcCCc---chHHHH-HhCCCceee--CCCCCCCccHHHHHHhhhC
Q 024295 83 EKGSSVAVLGL---GTVGLGAVDGARMHGAAKIIGIDKNP---WKKEKG-KAFGMTDFI--NPDDEPNKSISELVKGITH 153 (269)
Q Consensus 83 ~~~~~vlI~G~---g~~G~~a~~la~~~g~~~v~~~~~~~---~~~~~~-~~~g~~~v~--~~~~~~~~~~~~~i~~~~~ 153 (269)
-.++++||+|+ +++|.+.++.+...|+ +|+.+.+++ ++.+.+ ++++....+ |-.+ .++..+.+.+...
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~ 84 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTD--EASIDAVFETLEK 84 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCC--HHHHHHHHHHHHH
Confidence 35788999986 5899999888888999 888887653 222322 334532222 2222 2333333333221
Q ss_pred C-CCccEEEEccC
Q 024295 154 G-MGVDYCFECTG 165 (269)
Q Consensus 154 ~-~~~d~v~d~~g 165 (269)
. ..+|++++++|
T Consensus 85 ~~g~iD~lv~nAG 97 (272)
T PRK08159 85 KWGKLDFVVHAIG 97 (272)
T ss_pred hcCCCcEEEECCc
Confidence 1 27999999886
No 450
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.44 E-value=0.25 Score=41.28 Aligned_cols=95 Identities=17% Similarity=0.231 Sum_probs=64.1
Q ss_pred cccccchhhhHHHHHHhcCC-CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC
Q 024295 63 SFLSCGFTTGYGAAWKEAKV-EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP 140 (269)
Q Consensus 63 a~~~~~~~~a~~~l~~~~~~-~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~ 140 (269)
..+||+...... +.+..++ -.|++|.|+|. +.+|.-.+.++...|+ .|++..+..
T Consensus 137 ~~~PcTp~aii~-lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t--------------------- 193 (301)
T PRK14194 137 VLTPCTPSGCLR-LLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRS--------------------- 193 (301)
T ss_pred CCCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCC---------------------
Confidence 345555433333 3344444 36999999997 5999999999998999 888875432
Q ss_pred CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccC
Q 024295 141 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG 190 (269)
Q Consensus 141 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 190 (269)
.+..+.++ ..|+|+-++|.+..+...+ +++| ..++.+|..
T Consensus 194 -~~l~e~~~------~ADIVIsavg~~~~v~~~~--ik~G-aiVIDvgin 233 (301)
T PRK14194 194 -TDAKALCR------QADIVVAAVGRPRLIDADW--LKPG-AVVIDVGIN 233 (301)
T ss_pred -CCHHHHHh------cCCEEEEecCChhcccHhh--ccCC-cEEEEeccc
Confidence 12222221 5799999999876655544 8886 888888754
No 451
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.44 E-value=0.11 Score=42.32 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=48.4
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC-cchHHHHHhCCCce-eeCCCCCCCccHHHHHHhhhC-CCCccE
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN-PWKKEKGKAFGMTD-FINPDDEPNKSISELVKGITH-GMGVDY 159 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~-~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~ 159 (269)
.+++++|+|+ |.+|.+.++.+...|+ +|+.+.++ ++..+.++..+... ..|-.+ +....+.+.+... -.++|+
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~id~ 82 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELREKGVFTIKCDVGN--RDQVKKSKEVVEKEFGRVDV 82 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhCCCeEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence 4688999986 8999999988888899 77776544 33444444434322 223322 1333333333221 127999
Q ss_pred EEEccCC
Q 024295 160 CFECTGV 166 (269)
Q Consensus 160 v~d~~g~ 166 (269)
++.+.|.
T Consensus 83 li~~ag~ 89 (255)
T PRK06463 83 LVNNAGI 89 (255)
T ss_pred EEECCCc
Confidence 9998864
No 452
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=95.42 E-value=0.23 Score=39.86 Aligned_cols=104 Identities=19% Similarity=0.183 Sum_probs=64.7
Q ss_pred hcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhCCC----ceeeCCCCCCCccHHHHHHhhhC
Q 024295 79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKAFGM----TDFINPDDEPNKSISELVKGITH 153 (269)
Q Consensus 79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~~~~i~~~~~ 153 (269)
.....++.+||.+|+|. |..+..+++..+ ..++++++.+++..+.+++.-. ...++... .++.+. ...
T Consensus 46 ~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~---~~~ 118 (239)
T PRK00216 46 WLGVRPGDKVLDLACGT-GDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQ---GDAEAL---PFP 118 (239)
T ss_pred HhCCCCCCeEEEeCCCC-CHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEe---cccccC---CCC
Confidence 34455788999999987 888888888775 2399999998887777766321 11011111 111110 012
Q ss_pred CCCccEEEEcc------CChhHHHHHHHHcccCCcEEEEEccC
Q 024295 154 GMGVDYCFECT------GVPSLLSEALETTKVGKGKVIVIGVG 190 (269)
Q Consensus 154 ~~~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g~~ 190 (269)
...+|+|+-.. .....+..+.+.++++ |.++.+...
T Consensus 119 ~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~g-G~li~~~~~ 160 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPG-GRLVILEFS 160 (239)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHhccCC-cEEEEEEec
Confidence 23789886422 1233577888999996 998877543
No 453
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.41 E-value=0.12 Score=47.97 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=58.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295 85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFEC 163 (269)
Q Consensus 85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 163 (269)
..+|+|.|.|.+|+..++.++..|. +++++|.++++.+.+++.|...++ |..+ .+ .+++ .+-..+|.++-+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~GDat~---~~---~L~~-agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKVFYGDATR---MD---LLES-AGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeEEEEeCCC---HH---HHHh-cCCCcCCEEEEE
Confidence 3679999999999999999999999 999999999999999998865443 2222 22 2322 333478999988
Q ss_pred cCChhH
Q 024295 164 TGVPSL 169 (269)
Q Consensus 164 ~g~~~~ 169 (269)
++.+..
T Consensus 472 ~~d~~~ 477 (621)
T PRK03562 472 IDDPQT 477 (621)
T ss_pred eCCHHH
Confidence 877543
No 454
>PRK14968 putative methyltransferase; Provisional
Probab=95.41 E-value=0.069 Score=41.24 Aligned_cols=43 Identities=37% Similarity=0.638 Sum_probs=33.7
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295 82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA 127 (269)
Q Consensus 82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~ 127 (269)
..+++++|.+|+|. |..+..+++. +. ++++++.+++..+.+++
T Consensus 21 ~~~~~~vLd~G~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~ 63 (188)
T PRK14968 21 DKKGDRVLEVGTGS-GIVAIVAAKN-GK-KVVGVDINPYAVECAKC 63 (188)
T ss_pred ccCCCEEEEEcccc-CHHHHHHHhh-cc-eEEEEECCHHHHHHHHH
Confidence 36788999999875 7777777776 66 99999999877776643
No 455
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.40 E-value=0.1 Score=42.82 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=47.3
Q ss_pred CCCeEEEEcC---ChhHHHHHHHHHHcCCCeEEEEcCC---cchHHHH-HhCCCceee--CCCCCCCccHHHHHHhhhCC
Q 024295 84 KGSSVAVLGL---GTVGLGAVDGARMHGAAKIIGIDKN---PWKKEKG-KAFGMTDFI--NPDDEPNKSISELVKGITHG 154 (269)
Q Consensus 84 ~~~~vlI~G~---g~~G~~a~~la~~~g~~~v~~~~~~---~~~~~~~-~~~g~~~v~--~~~~~~~~~~~~~i~~~~~~ 154 (269)
+++++||+|+ +++|.+.++.+...|+ +|+.+.+. +++.+.+ ++++....+ |-.+ +++..+.+.+....
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~ 81 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVAS--DEQIDALFASLGQH 81 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhcCCcceeeccCCC--HHHHHHHHHHHHHH
Confidence 4688999983 5899998888888899 88877543 3333333 334432222 3222 23333333333221
Q ss_pred -CCccEEEEccCC
Q 024295 155 -MGVDYCFECTGV 166 (269)
Q Consensus 155 -~~~d~v~d~~g~ 166 (269)
..+|+++++.|.
T Consensus 82 ~g~iD~lvnnAG~ 94 (260)
T PRK06997 82 WDGLDGLVHSIGF 94 (260)
T ss_pred hCCCcEEEEcccc
Confidence 279999998863
No 456
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.39 E-value=0.12 Score=42.18 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=47.1
Q ss_pred CCCeEEEEcC---ChhHHHHHHHHHHcCCCeEEEEcCCc---chHHHH-HhC-CCc-e--eeCCCCCCCccHHHHHHhhh
Q 024295 84 KGSSVAVLGL---GTVGLGAVDGARMHGAAKIIGIDKNP---WKKEKG-KAF-GMT-D--FINPDDEPNKSISELVKGIT 152 (269)
Q Consensus 84 ~~~~vlI~G~---g~~G~~a~~la~~~g~~~v~~~~~~~---~~~~~~-~~~-g~~-~--v~~~~~~~~~~~~~~i~~~~ 152 (269)
.+++++|+|+ +++|.+.++.+...|+ +|+.++++. ++.+.+ +++ +.. . ..|-.+ ++...+.+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~ 82 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTS--DEEITACFETIK 82 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCC--HHHHHHHHHHHH
Confidence 4688999985 5899998888888999 888887653 233333 223 211 1 123322 233333333332
Q ss_pred CC-CCccEEEEccC
Q 024295 153 HG-MGVDYCFECTG 165 (269)
Q Consensus 153 ~~-~~~d~v~d~~g 165 (269)
.. .++|++++++|
T Consensus 83 ~~~g~ld~lv~nag 96 (257)
T PRK08594 83 EEVGVIHGVAHCIA 96 (257)
T ss_pred HhCCCccEEEECcc
Confidence 21 27999998876
No 457
>PRK06720 hypothetical protein; Provisional
Probab=95.39 E-value=0.17 Score=38.63 Aligned_cols=39 Identities=23% Similarity=0.155 Sum_probs=32.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKE 123 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~ 123 (269)
+++.++|.|+ +++|...+..+...|+ +|+.++++++..+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~ 54 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQ 54 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence 5788999986 7899998888888898 8999998765543
No 458
>PRK07102 short chain dehydrogenase; Provisional
Probab=95.39 E-value=0.12 Score=41.61 Aligned_cols=38 Identities=11% Similarity=0.219 Sum_probs=32.3
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHH
Q 024295 86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEK 124 (269)
Q Consensus 86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~ 124 (269)
++++|+|+ |.+|...++.+...|+ +|+++++++++.+.
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~ 40 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLER 40 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHH
Confidence 47899986 9999999998888899 89999998876554
No 459
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=95.39 E-value=0.096 Score=44.49 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=58.8
Q ss_pred hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHH---HHh-CCCceeeCCCCCCCccHHHHHHhhhCC
Q 024295 79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEK---GKA-FGMTDFINPDDEPNKSISELVKGITHG 154 (269)
Q Consensus 79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~---~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~ 154 (269)
.....++++||-+|+|. |..+..+++. |+..|+++|.++..... .+. .+.+.-+.... .++. ++...
T Consensus 117 ~l~~l~g~~VLDIGCG~-G~~~~~la~~-g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~---~d~e----~lp~~ 187 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGN-GYHMWRMLGA-GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLP---LGIE----QLPAL 187 (322)
T ss_pred hhCCCCCCEEEEeccCC-cHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEe---CCHH----HCCCc
Confidence 33445689999999987 8888888776 66589999987743322 222 22110011111 1111 11112
Q ss_pred CCccEEEEcc-----C-ChhHHHHHHHHcccCCcEEEEE
Q 024295 155 MGVDYCFECT-----G-VPSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 155 ~~~d~v~d~~-----g-~~~~~~~~~~~l~~~~G~~v~~ 187 (269)
..||+|+-.- . -...+..+.+.|++| |.++.-
T Consensus 188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpG-G~lvl~ 225 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPG-GELVLE 225 (322)
T ss_pred CCcCEEEECChhhccCCHHHHHHHHHHhcCCC-cEEEEE
Confidence 3799998521 1 133678899999997 998764
No 460
>PRK08226 short chain dehydrogenase; Provisional
Probab=95.37 E-value=0.15 Score=41.55 Aligned_cols=80 Identities=21% Similarity=0.279 Sum_probs=48.9
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---CCCc-ee--eCCCCCCCccHHHHHHhhhC-CC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA---FGMT-DF--INPDDEPNKSISELVKGITH-GM 155 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~ 155 (269)
+++++||+|+ |.+|...+..+...|+ +|+.++++++..+.+++ .+.. .. .|..+ ..+..+.+.+... -.
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~~ 81 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADELCGRGHRCTAVVADVRD--PASVAAAIKRAKEKEG 81 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhCCceEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence 4688999986 8999999998888899 89999987653333322 2322 11 22222 1222222222211 12
Q ss_pred CccEEEEccCC
Q 024295 156 GVDYCFECTGV 166 (269)
Q Consensus 156 ~~d~v~d~~g~ 166 (269)
.+|+++.+.|.
T Consensus 82 ~id~vi~~ag~ 92 (263)
T PRK08226 82 RIDILVNNAGV 92 (263)
T ss_pred CCCEEEECCCc
Confidence 68999998873
No 461
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=95.36 E-value=0.29 Score=41.70 Aligned_cols=133 Identities=16% Similarity=0.216 Sum_probs=79.1
Q ss_pred eEEEEcCChhH-HHHHHHHHHcC--CCeEEEEcCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295 87 SVAVLGLGTVG-LGAVDGARMHG--AAKIIGIDKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE 162 (269)
Q Consensus 87 ~vlI~G~g~~G-~~a~~la~~~g--~~~v~~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d 162 (269)
+|.|+|+|.++ ..-....+..+ .+-+-+.++++++.+. ++++|....+ .++.+.+. ...+|+|+-
T Consensus 5 rvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~-------~~~~~ll~----~~~iD~V~I 73 (342)
T COG0673 5 RVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAY-------TDLEELLA----DPDIDAVYI 73 (342)
T ss_pred EEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCccc-------CCHHHHhc----CCCCCEEEE
Confidence 67899998555 33454555544 4345555778877654 4567765333 33433332 336999999
Q ss_pred ccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh---h-CCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295 163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA---C-GGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF 235 (269)
Q Consensus 163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 235 (269)
++....+.+.+...++. |+-|++..|-. ...-+...+. . +++.+.-... +.....++.+-+++.+|.+
T Consensus 74 atp~~~H~e~~~~AL~a--GkhVl~EKPla-~t~~ea~~l~~~a~~~~~~l~v~~~--~Rf~p~~~~~k~li~~g~l 145 (342)
T COG0673 74 ATPNALHAELALAALEA--GKHVLCEKPLA-LTLEEAEELVELARKAGVKLMVGFN--RRFDPAVQALKELIDSGAL 145 (342)
T ss_pred cCCChhhHHHHHHHHhc--CCEEEEcCCCC-CCHHHHHHHHHHHHHcCCceeeehh--hhcCHHHHHHHHHHhcCCc
Confidence 99888888888888888 68888876553 1111112222 2 2333322221 1122468888899999865
No 462
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.36 E-value=0.09 Score=42.40 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=28.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
+|||+|+|++|...+..+...|..++..+|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 48999999999999999999999999999864
No 463
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.36 E-value=0.23 Score=41.18 Aligned_cols=95 Identities=18% Similarity=0.255 Sum_probs=62.9
Q ss_pred ccccchhhhHHHHHHhcCC-CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCC
Q 024295 64 FLSCGFTTGYGAAWKEAKV-EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPN 141 (269)
Q Consensus 64 ~~~~~~~~a~~~l~~~~~~-~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~ 141 (269)
.+||+...... +.+..++ -.|++|+|+|. +.+|.-...++...|+ .|+.... +.
T Consensus 137 ~~PcTp~aii~-lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~a-tVt~~hs-------------------~t--- 192 (285)
T PRK14189 137 FRPCTPYGVMK-MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGA-TVTICHS-------------------KT--- 192 (285)
T ss_pred CcCCCHHHHHH-HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEecC-------------------CC---
Confidence 34544332222 3344443 36899999997 4569999999999998 7776532 11
Q ss_pred ccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295 142 KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 142 ~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
.++.+.++ ..|+++-++|.+..+.. +.+++| ..++.+|...
T Consensus 193 ~~l~~~~~------~ADIVV~avG~~~~i~~--~~ik~g-avVIDVGin~ 233 (285)
T PRK14189 193 RDLAAHTR------QADIVVAAVGKRNVLTA--DMVKPG-ATVIDVGMNR 233 (285)
T ss_pred CCHHHHhh------hCCEEEEcCCCcCccCH--HHcCCC-CEEEEccccc
Confidence 33333332 67999999998754443 789996 8888988543
No 464
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.35 E-value=0.25 Score=42.08 Aligned_cols=87 Identities=22% Similarity=0.237 Sum_probs=57.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC 163 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 163 (269)
.+.+|.|+|.|.+|...++.++..|. +|++.+++++..... .... .++.+.+. ..|+|+-+
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~~~~~--------~~~~----~~l~ell~------~aDiVil~ 205 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNKDLDF--------LTYK----DSVKEAIK------DADIISLH 205 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhHhhhh--------hhcc----CCHHHHHh------cCCEEEEe
Confidence 56789999999999999999999999 999999876432211 0011 22322221 57888887
Q ss_pred cCChhH-----HHHHHHHcccCCcEEEEEccC
Q 024295 164 TGVPSL-----LSEALETTKVGKGKVIVIGVG 190 (269)
Q Consensus 164 ~g~~~~-----~~~~~~~l~~~~G~~v~~g~~ 190 (269)
+..... ....+..++++ ..+|.++..
T Consensus 206 lP~t~~t~~li~~~~l~~mk~g-avlIN~aRG 236 (330)
T PRK12480 206 VPANKESYHLFDKAMFDHVKKG-AILVNAARG 236 (330)
T ss_pred CCCcHHHHHHHhHHHHhcCCCC-cEEEEcCCc
Confidence 764321 23455677775 777777644
No 465
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=95.33 E-value=0.1 Score=44.82 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=47.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCC----Ccee-eCCCCCCCccHHHHHHhhhCCCC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFG----MTDF-INPDDEPNKSISELVKGITHGMG 156 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g----~~~v-~~~~~~~~~~~~~~i~~~~~~~~ 156 (269)
++.+|||+|+ |.+|..+++.+...|. +|++++++++..... +.++ ...+ .|-.+ . +.+.+...+.+
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~---~---~~~~~~~~~~~ 75 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRD---A---AKLRKAIAEFK 75 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCccchhHHHHHhhcCCceEEEccCCC---H---HHHHHHHhhcC
Confidence 4678999986 9999999999998999 899998776543322 2121 1111 12221 1 22333322336
Q ss_pred ccEEEEccCC
Q 024295 157 VDYCFECTGV 166 (269)
Q Consensus 157 ~d~v~d~~g~ 166 (269)
+|+|+++++.
T Consensus 76 ~d~vih~A~~ 85 (349)
T TIGR02622 76 PEIVFHLAAQ 85 (349)
T ss_pred CCEEEECCcc
Confidence 8999998863
No 466
>PRK07411 hypothetical protein; Validated
Probab=95.33 E-value=0.069 Score=46.61 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=31.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
+..+|||+|+|++|..+++.+...|..+++.+|.+
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35789999999999999999999999999999854
No 467
>PRK08223 hypothetical protein; Validated
Probab=95.33 E-value=0.1 Score=43.25 Aligned_cols=35 Identities=31% Similarity=0.275 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
+..+|+|+|+|++|..+++.+...|..++..+|.+
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 46789999999999999999999999899888754
No 468
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.31 E-value=0.086 Score=38.13 Aligned_cols=78 Identities=19% Similarity=0.351 Sum_probs=48.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHcCCCeEEEEc-CCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295 86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGID-KNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC 163 (269)
Q Consensus 86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~-~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 163 (269)
-+|-|+|+|.+|......++..|. .|..+. ++.++.+.+.. ++...+.+.. +.. ...|++|-+
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~srs~~sa~~a~~~~~~~~~~~~~------------~~~--~~aDlv~ia 75 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGH-EVVGVYSRSPASAERAAAFIGAGAILDLE------------EIL--RDADLVFIA 75 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTS-EEEEESSCHH-HHHHHHC--TT-----TT------------GGG--CC-SEEEE-
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCcccccccccccccccccccc------------ccc--ccCCEEEEE
Confidence 578899999999999999999999 887774 55556666554 3433333221 111 278999999
Q ss_pred cCChhHHHHHHHHccc
Q 024295 164 TGVPSLLSEALETTKV 179 (269)
Q Consensus 164 ~g~~~~~~~~~~~l~~ 179 (269)
+... .+....+.+..
T Consensus 76 vpDd-aI~~va~~La~ 90 (127)
T PF10727_consen 76 VPDD-AIAEVAEQLAQ 90 (127)
T ss_dssp S-CC-HHHHHHHHHHC
T ss_pred echH-HHHHHHHHHHH
Confidence 9776 66666666654
No 469
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=95.31 E-value=0.045 Score=41.99 Aligned_cols=110 Identities=20% Similarity=0.246 Sum_probs=55.2
Q ss_pred cccchhhhHHHHHH-----hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---C-C----C-
Q 024295 65 LSCGFTTGYGAAWK-----EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA---F-G----M- 130 (269)
Q Consensus 65 ~~~~~~~a~~~l~~-----~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~---~-g----~- 130 (269)
++.+...+.+.... .....++.+||-+|+| +|+..+.+++..+..+|+.+|.++ -.+.++. . + .
T Consensus 21 W~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG-~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~ 98 (173)
T PF10294_consen 21 WPAALVLARYLLSHSESEFNPELFRGKRVLELGAG-TGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGR 98 (173)
T ss_dssp --HHHHHHHHHHH-------GGGTTTSEEEETT-T-TSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-------
T ss_pred echHHHHHHHHHHhcccccchhhcCCceEEEECCc-cchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccccccc
Confidence 34445555554332 2345678999999988 587777777776666999999876 5555433 1 1 1
Q ss_pred --ceeeCCCCCCCccHHHHHHhhhCCCCccEEE--Ecc----CChhHHHHHHHHcccCCcEE
Q 024295 131 --TDFINPDDEPNKSISELVKGITHGMGVDYCF--ECT----GVPSLLSEALETTKVGKGKV 184 (269)
Q Consensus 131 --~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~--d~~----g~~~~~~~~~~~l~~~~G~~ 184 (269)
...+++.+ + .. .+..+...||+|+ |++ -.++.+..+..+++++ +.+
T Consensus 99 v~v~~L~Wg~---~-~~---~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~-~~v 152 (173)
T PF10294_consen 99 VSVRPLDWGD---E-LD---SDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPN-GKV 152 (173)
T ss_dssp -EEEE--TTS-----HH---HHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT--TTE
T ss_pred ccCcEEEecC---c-cc---ccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCC-CEE
Confidence 11233332 1 11 1222334789886 333 2233455666677775 663
No 470
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.31 E-value=0.079 Score=44.20 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=31.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW 120 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~ 120 (269)
+++++||+|+|+.+.+++..+...|+++++++.|+++
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 5679999999888988777777789989999999854
No 471
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=95.29 E-value=0.15 Score=42.46 Aligned_cols=92 Identities=25% Similarity=0.287 Sum_probs=58.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc---hHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW---KKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDY 159 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~---~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~ 159 (269)
.|++||-+|+|. |.....+++. |++.|++++.+.. +...+++ +|.+..+..- +...+.+.. ...||+
T Consensus 115 ~gk~VLDIGC~n-GY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l----plgvE~Lp~---~~~FDt 185 (315)
T PF08003_consen 115 KGKRVLDIGCNN-GYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL----PLGVEDLPN---LGAFDT 185 (315)
T ss_pred CCCEEEEecCCC-cHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEc----Ccchhhccc---cCCcCE
Confidence 689999999987 8888888776 7779999998763 3334454 3432211111 122333333 237999
Q ss_pred EEEccCC-------hhHHHHHHHHcccCCcEEEE
Q 024295 160 CFECTGV-------PSLLSEALETTKVGKGKVIV 186 (269)
Q Consensus 160 v~d~~g~-------~~~~~~~~~~l~~~~G~~v~ 186 (269)
||- .|. -.++..+-+.+++| |.+++
T Consensus 186 VF~-MGVLYHrr~Pl~~L~~Lk~~L~~g-GeLvL 217 (315)
T PF08003_consen 186 VFS-MGVLYHRRSPLDHLKQLKDSLRPG-GELVL 217 (315)
T ss_pred EEE-eeehhccCCHHHHHHHHHHhhCCC-CEEEE
Confidence 984 332 12567777889996 98874
No 472
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=95.29 E-value=0.12 Score=41.62 Aligned_cols=80 Identities=21% Similarity=0.189 Sum_probs=49.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCc-ee--eCCCCCCCccHHHHHHhhhC-CCCc
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMT-DF--INPDDEPNKSISELVKGITH-GMGV 157 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~ 157 (269)
+++++||+|+ |.+|...+..+...|+ .|+..+++.++.+.+. +++.. .+ .|-.+ ...+.+.+.+... -.++
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~i 81 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAELGERVKIFPANLSD--RDEVKALGQKAEADLEGV 81 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence 4678999986 9999999888888898 8888888776665543 33321 12 22222 1222222222211 1279
Q ss_pred cEEEEccCC
Q 024295 158 DYCFECTGV 166 (269)
Q Consensus 158 d~v~d~~g~ 166 (269)
|.++.+.|.
T Consensus 82 d~vi~~ag~ 90 (245)
T PRK12936 82 DILVNNAGI 90 (245)
T ss_pred CEEEECCCC
Confidence 999999874
No 473
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.28 E-value=0.063 Score=35.26 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=28.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295 87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP 119 (269)
Q Consensus 87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~ 119 (269)
+|+|+|+|.+|.-++..++..|. +|+.+.+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccc
Confidence 58899999999999999999998 999998764
No 474
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.27 E-value=0.18 Score=42.46 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP 119 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~ 119 (269)
.|++|.|+|.|.+|...+++++..|. +|++.+++.
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~ 155 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSY 155 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 57999999999999999999999999 999999763
No 475
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.27 E-value=0.14 Score=41.19 Aligned_cols=70 Identities=23% Similarity=0.310 Sum_probs=48.4
Q ss_pred EEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295 88 VAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW--KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT 164 (269)
Q Consensus 88 vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~ 164 (269)
|+|+|+ |.+|...++.+...+. +|.++.|+.. ..+.++..|+..+. -+- .+ .+.+.+... |+|.||-++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~~~~~~~~l~~~g~~vv~-~d~---~~-~~~l~~al~--g~d~v~~~~ 72 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDPSSDRAQQLQALGAEVVE-ADY---DD-PESLVAALK--GVDAVFSVT 72 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSSHHHHHHHHHHTTTEEEE-S-T---T--HHHHHHHHT--TCSEEEEES
T ss_pred CEEECCccHHHHHHHHHHHhCCC-CcEEEEeccchhhhhhhhcccceEee-ccc---CC-HHHHHHHHc--CCceEEeec
Confidence 689996 9999999999999888 8999998763 34556778876442 221 11 222333222 899999988
Q ss_pred C
Q 024295 165 G 165 (269)
Q Consensus 165 g 165 (269)
+
T Consensus 73 ~ 73 (233)
T PF05368_consen 73 P 73 (233)
T ss_dssp S
T ss_pred C
Confidence 7
No 476
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.27 E-value=0.17 Score=46.82 Aligned_cols=92 Identities=8% Similarity=0.058 Sum_probs=64.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295 86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFECT 164 (269)
Q Consensus 86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~ 164 (269)
.+|+|.|.|.+|+..++.++..|. +++++|.++++.+.+++.|...++ |..+ .+ +.+..+=...|.++-++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~GDat~---~~----~L~~agi~~A~~vv~~~ 472 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKVYYGDATQ---LE----LLRAAGAEKAEAIVITC 472 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeEEEeeCCC---HH----HHHhcCCccCCEEEEEe
Confidence 579999999999999999999999 999999999999999998865444 2222 22 22323334789999998
Q ss_pred CChhHHHHH---HHHcccCCcEEEE
Q 024295 165 GVPSLLSEA---LETTKVGKGKVIV 186 (269)
Q Consensus 165 g~~~~~~~~---~~~l~~~~G~~v~ 186 (269)
+.+..-..+ .+...|. -+++.
T Consensus 473 ~d~~~n~~i~~~~r~~~p~-~~Iia 496 (601)
T PRK03659 473 NEPEDTMKIVELCQQHFPH-LHILA 496 (601)
T ss_pred CCHHHHHHHHHHHHHHCCC-CeEEE
Confidence 875442233 3444553 55543
No 477
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.27 E-value=0.34 Score=39.16 Aligned_cols=104 Identities=16% Similarity=0.100 Sum_probs=58.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC-cchH----HHHHhCCCc-ee--eCCCCCCCccHHHHHHhhhC-
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN-PWKK----EKGKAFGMT-DF--INPDDEPNKSISELVKGITH- 153 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~-~~~~----~~~~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~- 153 (269)
.++++||+|+ |.+|.+.+.-+...|+ +++.+.++ .++. +.+++.+.. .. .|..+ +....+.+.++..
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~ 81 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVST--REGCETLAKATIDR 81 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCC--HHHHHHHHHHHHHH
Confidence 3578999986 8999998888888899 77666543 2222 222334332 12 23222 1222222222211
Q ss_pred CCCccEEEEccCC----------hh---------------HHHHHHHHcccCCcEEEEEccCC
Q 024295 154 GMGVDYCFECTGV----------PS---------------LLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 154 ~~~~d~v~d~~g~----------~~---------------~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
-.++|++|.++|. .. ..+.+.+.++.. |+++.++...
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~sS~~ 143 (252)
T PRK06077 82 YGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREG-GAIVNIASVA 143 (252)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcC-cEEEEEcchh
Confidence 1278999999873 00 123344455664 8999887654
No 478
>PLN00016 RNA-binding protein; Provisional
Probab=95.26 E-value=0.26 Score=42.78 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=59.3
Q ss_pred CCeEEEE----cC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-----------HhCCCceeeCCCCCCCccHHHHH
Q 024295 85 GSSVAVL----GL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-----------KAFGMTDFINPDDEPNKSISELV 148 (269)
Q Consensus 85 ~~~vlI~----G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-----------~~~g~~~v~~~~~~~~~~~~~~i 148 (269)
..+|||+ |+ |-+|..++..+...|. +|++++++++....+ ...+...+. .+..+ +
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~-------~D~~d-~ 122 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVW-------GDPAD-V 122 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhccCchhhhhHhhhcCceEEE-------ecHHH-H
Confidence 4689999 96 9999999988888898 999999876543221 122333332 22222 2
Q ss_pred HhhhCCCCccEEEEccCChh-HHHHHHHHcccC-CcEEEEEcc
Q 024295 149 KGITHGMGVDYCFECTGVPS-LLSEALETTKVG-KGKVIVIGV 189 (269)
Q Consensus 149 ~~~~~~~~~d~v~d~~g~~~-~~~~~~~~l~~~-~G~~v~~g~ 189 (269)
.+.....++|+|+++.+... ....+++.++.. -.++|.++.
T Consensus 123 ~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS 165 (378)
T PLN00016 123 KSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS 165 (378)
T ss_pred HhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 22222348999999876431 244556665542 136777664
No 479
>PRK07985 oxidoreductase; Provisional
Probab=95.25 E-value=0.4 Score=40.09 Aligned_cols=80 Identities=19% Similarity=0.063 Sum_probs=47.3
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCc--chHHHH----HhCCCce---eeCCCCCCCccHHHHHHhhhC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNP--WKKEKG----KAFGMTD---FINPDDEPNKSISELVKGITH 153 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~--~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~ 153 (269)
+++++||+|+ |.+|.+.++.+...|+ +|+.+.++. ++.+.+ ++.+... ..|-.+ .+...+.+.+...
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~ 124 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSD--EKFARSLVHEAHK 124 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCC--HHHHHHHHHHHHH
Confidence 5678999986 8999999988888899 888876543 223222 2233221 123222 1223333333221
Q ss_pred -CCCccEEEEccCC
Q 024295 154 -GMGVDYCFECTGV 166 (269)
Q Consensus 154 -~~~~d~v~d~~g~ 166 (269)
-.++|+++.+.|.
T Consensus 125 ~~g~id~lv~~Ag~ 138 (294)
T PRK07985 125 ALGGLDIMALVAGK 138 (294)
T ss_pred HhCCCCEEEECCCC
Confidence 1278999988763
No 480
>PRK12747 short chain dehydrogenase; Provisional
Probab=95.25 E-value=0.38 Score=38.96 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=29.6
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEc-CCcchH
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGID-KNPWKK 122 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~-~~~~~~ 122 (269)
.++++||+|+ |.+|.+.++.+...|+ +|+... +++++.
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~ 42 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEA 42 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHH
Confidence 4688999986 8999999999988999 777764 444433
No 481
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.24 E-value=0.13 Score=41.88 Aligned_cols=100 Identities=15% Similarity=0.096 Sum_probs=58.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC--CCcee-eCCCCCCCccHHHHHHhhhCCCCccE
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF--GMTDF-INPDDEPNKSISELVKGITHGMGVDY 159 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~--g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~ 159 (269)
+..+|||+|+ |.+|..+++.+...|+ +|+++.|++++....... ++..+ .|..+ . .+.+.+... .++|+
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d---~--~~~l~~~~~-~~~d~ 88 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKTSLPQDPSLQIVRADVTE---G--SDKLVEAIG-DDSDA 88 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHHhcccCCceEEEEeeCCC---C--HHHHHHHhh-cCCCE
Confidence 3578999996 9999999888888898 899998887665433221 22222 22221 1 122222221 26899
Q ss_pred EEEccCChh-------------HHHHHHHHcccC-CcEEEEEccC
Q 024295 160 CFECTGVPS-------------LLSEALETTKVG-KGKVIVIGVG 190 (269)
Q Consensus 160 v~d~~g~~~-------------~~~~~~~~l~~~-~G~~v~~g~~ 190 (269)
+|.+.|... ....+++.+... .++++.++..
T Consensus 89 vi~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~ 133 (251)
T PLN00141 89 VICATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI 133 (251)
T ss_pred EEECCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence 998876421 123444444432 2578887654
No 482
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=95.24 E-value=0.11 Score=42.58 Aligned_cols=80 Identities=21% Similarity=0.296 Sum_probs=49.9
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-ee--eCCCCCCCccHHHHHHhhhCC-
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DF--INPDDEPNKSISELVKGITHG- 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~~- 154 (269)
+++++||+|+ +.+|.+.+..+...|+ +|+.+++++++.+.+ ++.+.. .. .|-.+ .....+.+.+....
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTD--EDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHhC
Confidence 5688999986 8999998888888899 888888887665443 233432 11 23222 12222223222111
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|.++.+.|.
T Consensus 86 ~~id~li~~ag~ 97 (265)
T PRK07097 86 GVIDILVNNAGI 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 268999998874
No 483
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.23 E-value=0.21 Score=39.20 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=30.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
.+.+|+|+|+|++|...++.+...|..+++.+|.+
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 35789999999999999999999999889888754
No 484
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=95.22 E-value=0.24 Score=41.54 Aligned_cols=59 Identities=24% Similarity=0.262 Sum_probs=47.7
Q ss_pred HhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcC---CcchHHHHHhCCCceeeCCC
Q 024295 78 KEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDK---NPWKKEKGKAFGMTDFINPD 137 (269)
Q Consensus 78 ~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~---~~~~~~~~~~~g~~~v~~~~ 137 (269)
..+.+.|+++.||=.. |++|....-+++..|+ +++++-. +.||...++.+|+..+....
T Consensus 96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~ 158 (362)
T KOG1252|consen 96 KKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLRALGAEIILTPP 158 (362)
T ss_pred HcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHHHcCCEEEecCh
Confidence 4577899999999985 9999999999999999 7777753 45888888999987655443
No 485
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=95.22 E-value=0.12 Score=41.91 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=49.1
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-ee--eCCCCCCCccHHHHHHhhhC-CCC
Q 024295 86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DF--INPDDEPNKSISELVKGITH-GMG 156 (269)
Q Consensus 86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~ 156 (269)
+++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+ .+.. .. .|..+ ..++.+.+.+... ..+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTK--EDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHhcCC
Confidence 57999986 9999999988888899 99999998776655433 2221 11 23322 1233333333211 136
Q ss_pred ccEEEEccCC
Q 024295 157 VDYCFECTGV 166 (269)
Q Consensus 157 ~d~v~d~~g~ 166 (269)
+|+++.+.+.
T Consensus 79 ~d~vi~~a~~ 88 (255)
T TIGR01963 79 LDILVNNAGI 88 (255)
T ss_pred CCEEEECCCC
Confidence 8999987753
No 486
>PRK07791 short chain dehydrogenase; Provisional
Probab=95.22 E-value=0.21 Score=41.50 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=29.8
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295 83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNP 119 (269)
Q Consensus 83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~ 119 (269)
.+++++||+|+ +++|.+.++.+...|+ +|+.++++.
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~ 40 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGV 40 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCc
Confidence 35789999986 8999999888888899 888887654
No 487
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=95.21 E-value=0.13 Score=41.88 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=50.1
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DF--INPDDEPNKSISELVKGITH-G 154 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~ 154 (269)
.++++||+|+ |.+|...+..+...|+ +++.+++++++.+.+ ++.+.+ ++ .|..+ .+...+.+.+... -
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS--EQELSALADFALSKL 86 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence 4789999986 8999999988888899 888888877655433 223322 12 23322 1223333332211 1
Q ss_pred CCccEEEEccCC
Q 024295 155 MGVDYCFECTGV 166 (269)
Q Consensus 155 ~~~d~v~d~~g~ 166 (269)
.++|+++.+.|.
T Consensus 87 ~~~d~li~~ag~ 98 (255)
T PRK06113 87 GKVDILVNNAGG 98 (255)
T ss_pred CCCCEEEECCCC
Confidence 278999998863
No 488
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.21 E-value=0.12 Score=46.13 Aligned_cols=70 Identities=29% Similarity=0.335 Sum_probs=48.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc-chH----HHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP-WKK----EKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVD 158 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~-~~~----~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d 158 (269)
.+++|+|+|+|.+|+.++..+...|+ +|++++++. +.. +.+++.|...+.... .+ ... + ++|
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~----~~---~~~----~-~~d 70 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGELGIELVLGEY----PE---EFL----E-GVD 70 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCEEEeCCc----ch---hHh----h-cCC
Confidence 46889999998899999999999999 999999764 222 233445655333222 11 111 2 689
Q ss_pred EEEEccCC
Q 024295 159 YCFECTGV 166 (269)
Q Consensus 159 ~v~d~~g~ 166 (269)
+|+.++|.
T Consensus 71 ~vv~~~g~ 78 (450)
T PRK14106 71 LVVVSPGV 78 (450)
T ss_pred EEEECCCC
Confidence 99998875
No 489
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=95.19 E-value=0.62 Score=39.09 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=36.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC
Q 024295 87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM 130 (269)
Q Consensus 87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~ 130 (269)
+|.|+|.|.+|...+..+...|. +|++.++++++.+.+++.|.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g~ 44 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDRT 44 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCC
Confidence 57899999999988777777888 89999999998888877653
No 490
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.19 E-value=0.3 Score=40.71 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=34.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 024295 86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK 126 (269)
Q Consensus 86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~ 126 (269)
++|.|+|+|.+|...++.+...|. +|++.++++++.+.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~ 41 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQ 41 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Confidence 468999999999998888888898 9999999988877654
No 491
>PRK05650 short chain dehydrogenase; Provisional
Probab=95.17 E-value=0.13 Score=42.19 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=47.4
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce-ee--CCCCCCCccHHHHHHhhhC-CCCc
Q 024295 87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD-FI--NPDDEPNKSISELVKGITH-GMGV 157 (269)
Q Consensus 87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-~~~~ 157 (269)
++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+ +..+.+. .+ |..+ ..++.+.+.+... ..++
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRD--YSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence 6899986 8999998888888899 899999887665533 2233222 12 2221 1222222222211 1279
Q ss_pred cEEEEccCC
Q 024295 158 DYCFECTGV 166 (269)
Q Consensus 158 d~v~d~~g~ 166 (269)
|++++++|.
T Consensus 79 d~lI~~ag~ 87 (270)
T PRK05650 79 DVIVNNAGV 87 (270)
T ss_pred CEEEECCCC
Confidence 999998874
No 492
>PRK10206 putative oxidoreductase; Provisional
Probab=95.16 E-value=0.18 Score=43.31 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=73.8
Q ss_pred eEEEEcCChhHH-HHHH-HHHH-cCCCeEEEE-cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295 87 SVAVLGLGTVGL-GAVD-GARM-HGAAKIIGI-DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE 162 (269)
Q Consensus 87 ~vlI~G~g~~G~-~a~~-la~~-~g~~~v~~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d 162 (269)
++.|+|+|.++. .-+. +... .++ +++++ ++++++.+.+++++...++ .++.+.+ ....+|+|+-
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~-~l~av~d~~~~~~~~~~~~~~~~~~-------~~~~ell----~~~~iD~V~I 70 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSW-HVAHIFRRHAKPEEQAPIYSHIHFT-------SDLDEVL----NDPDVKLVVV 70 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCE-EEEEEEcCChhHHHHHHhcCCCccc-------CCHHHHh----cCCCCCEEEE
Confidence 578999987553 2222 2232 356 66654 5555555445556522222 3343333 2348999999
Q ss_pred ccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295 163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF 235 (269)
Q Consensus 163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 235 (269)
++....+.+.+..++.. |+-|++..+... ..-....+. .+++.+....... ....+..+.+++++|.+
T Consensus 71 ~tp~~~H~~~~~~al~a--GkhVl~EKPla~-~~~ea~~l~~~a~~~~~~l~v~~~~R--~~p~~~~~k~li~~g~i 142 (344)
T PRK10206 71 CTHADSHFEYAKRALEA--GKNVLVEKPFTP-TLAEAKELFALAKSKGLTVTPYQNRR--FDSCFLTAKKAIESGKL 142 (344)
T ss_pred eCCchHHHHHHHHHHHc--CCcEEEecCCcC-CHHHHHHHHHHHHHhCCEEEEEEeee--ECHHHHHHHHHHHcCCC
Confidence 99888788888888887 677777655431 111111121 2344443322111 22457788889998875
No 493
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=95.16 E-value=0.38 Score=39.92 Aligned_cols=73 Identities=22% Similarity=0.205 Sum_probs=53.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295 87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK-KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG 165 (269)
Q Consensus 87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g 165 (269)
+|.++|.|.+|.-..+=+...|. .+.+.++++++ .+.++..|+...- ...+.+. ..|+||-++.
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~~~Ga~~a~--------s~~eaa~------~aDvVitmv~ 66 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLAAAGATVAA--------SPAEAAA------EADVVITMLP 66 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHHHcCCcccC--------CHHHHHH------hCCEEEEecC
Confidence 57889999999998888888899 99999999999 8888888865332 1122221 5677777776
Q ss_pred ChhHHHHHH
Q 024295 166 VPSLLSEAL 174 (269)
Q Consensus 166 ~~~~~~~~~ 174 (269)
.++.....+
T Consensus 67 ~~~~V~~V~ 75 (286)
T COG2084 67 DDAAVRAVL 75 (286)
T ss_pred CHHHHHHHH
Confidence 655544444
No 494
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.16 E-value=0.16 Score=44.00 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=31.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295 84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118 (269)
Q Consensus 84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~ 118 (269)
.+.+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46789999999999999999999999899999865
No 495
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=95.15 E-value=0.055 Score=43.17 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=61.7
Q ss_pred HhcCCCCCCeEE-EEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc-eeeCCCCCCCccHHHHHHhhh-CC
Q 024295 78 KEAKVEKGSSVA-VLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT-DFINPDDEPNKSISELVKGIT-HG 154 (269)
Q Consensus 78 ~~~~~~~~~~vl-I~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~-~~ 154 (269)
..+...++.+++ -+|+|+ |+++.-++-+ +++|+++|.+++.++.+++.... .......+++++ +-++. +.
T Consensus 26 ~ia~~~~~h~~a~DvG~G~-Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~----~v~L~g~e 98 (261)
T KOG3010|consen 26 KIASRTEGHRLAWDVGTGN-GQAARGIAEH--YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDE----MVDLLGGE 98 (261)
T ss_pred HHHhhCCCcceEEEeccCC-CcchHHHHHh--hhhheeecCCHHHHHHhhcCCCcccccCCccccccc----cccccCCC
Confidence 456666777643 338876 7777666666 56899999999999999875432 111111111111 22222 23
Q ss_pred CCccEEEEcc-----CChhHHHHHHHHcccCCcEEEEE
Q 024295 155 MGVDYCFECT-----GVPSLLSEALETTKVGKGKVIVI 187 (269)
Q Consensus 155 ~~~d~v~d~~-----g~~~~~~~~~~~l~~~~G~~v~~ 187 (269)
..+|+|.-+- ..+...+.+.+.|++. |.++.+
T Consensus 99 ~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~-Gg~iav 135 (261)
T KOG3010|consen 99 ESVDLITAAQAVHWFDLERFYKEAYRVLRKD-GGLIAV 135 (261)
T ss_pred cceeeehhhhhHHhhchHHHHHHHHHHcCCC-CCEEEE
Confidence 4788886432 2345678889999996 744443
No 496
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.14 E-value=0.36 Score=40.28 Aligned_cols=40 Identities=28% Similarity=0.289 Sum_probs=34.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 024295 86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK 126 (269)
Q Consensus 86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~ 126 (269)
.+|.|+|+|.+|...++.+...|. +|+..++++++.+.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~ 43 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAK 43 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHH
Confidence 579999999999998888888898 9999999887766553
No 497
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.13 E-value=0.19 Score=42.68 Aligned_cols=100 Identities=17% Similarity=0.283 Sum_probs=60.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcC----CCeEEEEcC--CcchHHHHHhCCC--------------ceeeCCCC---CCCcc
Q 024295 87 SVAVLGLGTVGLGAVDGARMHG----AAKIIGIDK--NPWKKEKGKAFGM--------------TDFINPDD---EPNKS 143 (269)
Q Consensus 87 ~vlI~G~g~~G~~a~~la~~~g----~~~v~~~~~--~~~~~~~~~~~g~--------------~~v~~~~~---~~~~~ 143 (269)
+|.|+|.|.+|....+.+...+ . .|+++.. +.+.+.++.++.- ..+++.+. ....+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~-~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGI-EVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCe-EEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 4789999999999999877653 4 6666642 2233344433221 01111110 00011
Q ss_pred HHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295 144 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV 191 (269)
Q Consensus 144 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 191 (269)
.. ++ .| +..++|+||+|+|...+.+.+...+..| ++.|.++.+.
T Consensus 80 p~-~~-~w-~~~gvDiVie~tG~~~s~e~a~~~l~aG-a~~V~~SaP~ 123 (325)
T TIGR01532 80 PE-AL-PW-RALGVDLVLDCTGVYGNREQGERHIRAG-AKRVLFSHPG 123 (325)
T ss_pred hh-hc-cc-cccCCCEEEEccchhccHHHHHHHHHcC-CeEEEecCCC
Confidence 11 11 12 1248999999999887778888899986 8888888653
No 498
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.13 E-value=0.11 Score=42.81 Aligned_cols=78 Identities=22% Similarity=0.232 Sum_probs=49.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchH----HHHHhCC-C-ceeeCCCCCCCcc---HHHHHHhhhC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKK----EKGKAFG-M-TDFINPDDEPNKS---ISELVKGITH 153 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~----~~~~~~g-~-~~v~~~~~~~~~~---~~~~i~~~~~ 153 (269)
.|+.|||+|+ +++|.+.++=....|+ +++..|.+++.. +..++.| + ....|-.+ .++ ..+++++-.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~--~eei~~~a~~Vk~e~- 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISD--REEIYRLAKKVKKEV- 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCC--HHHHHHHHHHHHHhc-
Confidence 5899999986 6899876655555688 888888776433 3344444 2 23444433 133 333343333
Q ss_pred CCCccEEEEccCC
Q 024295 154 GMGVDYCFECTGV 166 (269)
Q Consensus 154 ~~~~d~v~d~~g~ 166 (269)
| .+|++++.+|-
T Consensus 113 G-~V~ILVNNAGI 124 (300)
T KOG1201|consen 113 G-DVDILVNNAGI 124 (300)
T ss_pred C-CceEEEecccc
Confidence 3 89999998875
No 499
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=95.12 E-value=0.48 Score=39.47 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=46.2
Q ss_pred HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc---CCcchHHHHHhCCCceeeCCC
Q 024295 77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID---KNPWKKEKGKAFGMTDFINPD 137 (269)
Q Consensus 77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~---~~~~~~~~~~~~g~~~v~~~~ 137 (269)
...+.+++|.+|+---+|++|.+.+.+++..|+ +++.+- .+++|.+.++.+|+.-+....
T Consensus 54 e~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy-~~iivmP~~~S~er~~~l~a~GAevi~t~~ 116 (300)
T COG0031 54 EKRGLLKPGGTIVEATSGNTGIALAMVAAAKGY-RLIIVMPETMSQERRKLLRALGAEVILTPG 116 (300)
T ss_pred HHcCCCCCCCEEEEcCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence 356779999965554469999999999999999 555443 356888899999988766655
No 500
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=95.12 E-value=0.13 Score=48.41 Aligned_cols=80 Identities=21% Similarity=0.238 Sum_probs=51.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----CCCc--e--eeCCCCCCCccHHHHHHhhhC
Q 024295 84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-----FGMT--D--FINPDDEPNKSISELVKGITH 153 (269)
Q Consensus 84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-----~g~~--~--v~~~~~~~~~~~~~~i~~~~~ 153 (269)
.++++||+|+ |.+|.+.++.+...|+ +|++++++.++.+.+.+ .+.. . ..|-.+ ...+.+.+.+...
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd--~~~v~~a~~~i~~ 489 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTD--EQAVKAAFADVAL 489 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCC--HHHHHHHHHHHHH
Confidence 4789999986 9999999988888899 99999988766554321 2221 1 122222 1233333333211
Q ss_pred -CCCccEEEEccCC
Q 024295 154 -GMGVDYCFECTGV 166 (269)
Q Consensus 154 -~~~~d~v~d~~g~ 166 (269)
-.++|++++++|.
T Consensus 490 ~~g~iDilV~nAG~ 503 (676)
T TIGR02632 490 AYGGVDIVVNNAGI 503 (676)
T ss_pred hcCCCcEEEECCCC
Confidence 1279999999874
Done!