BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024296
         (269 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ADA|A Chain A, Atomic Structure Of Adenosine Deaminase Complexed With A
           Transition-State Analog: Understanding Catalysis And
           Immunodeficiency Mutations
          Length = 352

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 37/261 (14%)

Query: 8   PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD----VEHVI-MKSDRSLHEVFKLFD 62
           PKVELH HL+G+I+  T+L   +   ++G+ + +D    + ++I M    SL      FD
Sbjct: 10  PKVELHVHLDGAIKPETILYFGK---KRGIALPADTVEELRNIIGMDKPLSLPGFLAKFD 66

Query: 63  -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121
             + V+      + RI  E VE  A E +VY+E+R +P                    L 
Sbjct: 67  YYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPH-------------------LL 107

Query: 122 AVSAVD-VDFASRSIDVRRPVNTKNMNDACN-GTRGKKIYVRLLLSIDRRETTEAAMETV 179
           A S VD + +     DV        +N     G +   I VR +L   R + +  ++E +
Sbjct: 108 ANSKVDPMPWNQTEGDVTPDDVVDLVNQGLQEGEQAFGIKVRSILCCMRHQPS-WSLEVL 166

Query: 180 KLALEMRDLGVVGIDLSGNPTKGEWTTFLP----ALKFAREQGLQITLHCGEIPNKEEIQ 235
           +L  +     VV +DL+G+ T  E ++  P    A + A + G+  T+H GE+ + E ++
Sbjct: 167 ELCKKYNQKTVVAMDLAGDETI-EGSSLFPGHVEAYEGAVKNGIHRTVHAGEVGSPEVVR 225

Query: 236 SMLDFLP-QRIGHACCFEEEE 255
             +D L  +R+GH     E+E
Sbjct: 226 EAVDILKTERVGHGYHTIEDE 246


>pdb|1FKX|A Chain A, Murine Adenosine Deaminase (D296a)
          Length = 349

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 37/261 (14%)

Query: 8   PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD----VEHVI-MKSDRSLHEVFKLFD 62
           PKVELH HL+G+I+  T+L   +   ++G+ + +D    + ++I M    SL      FD
Sbjct: 7   PKVELHVHLDGAIKPETILYFGK---KRGIALPADTVEELRNIIGMDKPLSLPGFLAKFD 63

Query: 63  -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121
             + V+      + RI  E VE  A E +VY+E+R +P                    L 
Sbjct: 64  YYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPH-------------------LL 104

Query: 122 AVSAVD-VDFASRSIDVRRPVNTKNMNDACN-GTRGKKIYVRLLLSIDRRETTEAAMETV 179
           A S VD + +     DV        +N     G +   I VR +L   R + +  ++E +
Sbjct: 105 ANSKVDPMPWNQTEGDVTPDDVVDLVNQGLQEGEQAFGIKVRSILCCMRHQPS-WSLEVL 163

Query: 180 KLALEMRDLGVVGIDLSGNPTKGEWTTFLP----ALKFAREQGLQITLHCGEIPNKEEIQ 235
           +L  +     VV +DL+G+ T  E ++  P    A + A + G+  T+H GE+ + E ++
Sbjct: 164 ELCKKYNQKTVVAMDLAGDETI-EGSSLFPGHVEAYEGAVKNGIHRTVHAGEVGSPEVVR 222

Query: 236 SMLDFLP-QRIGHACCFEEEE 255
             +D L  +R+GH     E+E
Sbjct: 223 EAVDILKTERVGHGYHTIEDE 243


>pdb|1A4L|A Chain A, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
 pdb|1A4L|B Chain B, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
 pdb|1A4L|C Chain C, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
 pdb|1A4L|D Chain D, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
 pdb|1A4M|A Chain A, Ada Structure Complexed With Purine Riboside At Ph 7.0
 pdb|1A4M|B Chain B, Ada Structure Complexed With Purine Riboside At Ph 7.0
 pdb|1A4M|C Chain C, Ada Structure Complexed With Purine Riboside At Ph 7.0
 pdb|1A4M|D Chain D, Ada Structure Complexed With Purine Riboside At Ph 7.0
 pdb|1ADD|A Chain A, A Pre-Transition State Mimic Of An Enzyme: X-Ray Structure
           Of Adenosine Deaminase With Bound 1-Deaza-Adenosine And
           Zinc-Activated Water
 pdb|3MVT|A Chain A, Crystal Structure Of Apo Mada At 2.2a Resolution
 pdb|3MVT|C Chain C, Crystal Structure Of Apo Mada At 2.2a Resolution
 pdb|3MVI|A Chain A, Crystal Structure Of Holo Mada At 1.6 A Resolution
 pdb|3MVI|B Chain B, Crystal Structure Of Holo Mada At 1.6 A Resolution
          Length = 349

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 37/261 (14%)

Query: 8   PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD----VEHVI-MKSDRSLHEVFKLFD 62
           PKVELH HL+G+I+  T+L   +   ++G+ + +D    + ++I M    SL      FD
Sbjct: 7   PKVELHVHLDGAIKPETILYFGK---KRGIALPADTVEELRNIIGMDKPLSLPGFLAKFD 63

Query: 63  -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121
             + V+      + RI  E VE  A E +VY+E+R +P                    L 
Sbjct: 64  YYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPH-------------------LL 104

Query: 122 AVSAVD-VDFASRSIDVRRPVNTKNMNDACN-GTRGKKIYVRLLLSIDRRETTEAAMETV 179
           A S VD + +     DV        +N     G +   I VR +L   R + +  ++E +
Sbjct: 105 ANSKVDPMPWNQTEGDVTPDDVVDLVNQGLQEGEQAFGIKVRSILCCMRHQPS-WSLEVL 163

Query: 180 KLALEMRDLGVVGIDLSGNPTKGEWTTFLP----ALKFAREQGLQITLHCGEIPNKEEIQ 235
           +L  +     VV +DL+G+ T  E ++  P    A + A + G+  T+H GE+ + E ++
Sbjct: 164 ELCKKYNQKTVVAMDLAGDETI-EGSSLFPGHVEAYEGAVKNGIHRTVHAGEVGSPEVVR 222

Query: 236 SMLDFLP-QRIGHACCFEEEE 255
             +D L  +R+GH     E+E
Sbjct: 223 EAVDILKTERVGHGYHTIEDE 243


>pdb|1FKW|A Chain A, Murine Adenosine Deaminase (D295e)
          Length = 349

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 37/261 (14%)

Query: 8   PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD----VEHVI-MKSDRSLHEVFKLFD 62
           PKVELH HL+G+I+  T+L   +   ++G+ + +D    + ++I M    SL      FD
Sbjct: 7   PKVELHVHLDGAIKPETILYFGK---KRGIALPADTVEELRNIIGMDKPLSLPGFLAKFD 63

Query: 63  -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121
             + V+      + RI  E VE  A E +VY+E+R +P                    L 
Sbjct: 64  YYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPH-------------------LL 104

Query: 122 AVSAVD-VDFASRSIDVRRPVNTKNMNDACN-GTRGKKIYVRLLLSIDRRETTEAAMETV 179
           A S VD + +     DV        +N     G +   I VR +L   R + +  ++E +
Sbjct: 105 ANSKVDPMPWNQTEGDVTPDDVVDLVNQGLQEGEQAFGIKVRSILCCMRHQPS-WSLEVL 163

Query: 180 KLALEMRDLGVVGIDLSGNPTKGEWTTFLP----ALKFAREQGLQITLHCGEIPNKEEIQ 235
           +L  +     VV +DL+G+ T  E ++  P    A + A + G+  T+H GE+ + E ++
Sbjct: 164 ELCKKYNQKTVVAMDLAGDETI-EGSSLFPGHVEAYEGAVKNGIHRTVHAGEVGSPEVVR 222

Query: 236 SMLDFLP-QRIGHACCFEEEE 255
             +D L  +R+GH     E+E
Sbjct: 223 EAVDILKTERVGHGYHTIEDE 243


>pdb|3KM8|A Chain A, Crystal Structuore Of Adenosine Deaminase From Mus
           Musculus Complexed With 9-Deazainosine
 pdb|3KM8|B Chain B, Crystal Structuore Of Adenosine Deaminase From Mus
           Musculus Complexed With 9-Deazainosine
          Length = 352

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 118/254 (46%), Gaps = 37/254 (14%)

Query: 8   PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD----VEHVI-MKSDRSLHEVFKLFD 62
           PKVELH HL+G+I+  T+L   +   ++G+ + +D    + ++I M    SL      FD
Sbjct: 10  PKVELHVHLDGAIKPETILYFGK---KRGIALPADTVEELRNIIGMDKPLSLPGFLAKFD 66

Query: 63  -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121
             + V+      + RI  E VE  A E +VY+E+R +P                    L 
Sbjct: 67  YYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPH-------------------LL 107

Query: 122 AVSAVD-VDFASRSIDVRRPVNTKNMNDACN-GTRGKKIYVRLLLSIDRRETTEAAMETV 179
           A S VD + +     DV        +N     G +   I VR +L   R + +  ++E +
Sbjct: 108 ANSKVDPMPWNQTEGDVTPDDVVDLVNQGLQEGEQAFGIKVRSILCCMRHQPS-WSLEVL 166

Query: 180 KLALEMRDLGVVGIDLSGNPTKGEWTTFLP----ALKFAREQGLQITLHCGEIPNKEEIQ 235
           +L  +     VV +DL+G+ T  E ++  P    A + A + G+  T+H G++ + E ++
Sbjct: 167 ELCKKYNQKTVVAMDLAGDETI-EGSSLFPGHVEAYEGAVKNGIHRTVHAGQVGSPEVVR 225

Query: 236 SMLDFLP-QRIGHA 248
             +D L  +R+GH 
Sbjct: 226 EAVDILKTERVGHG 239


>pdb|4GXW|A Chain A, Crystal Structure Of A Cog1816 Amidohydrolase (Target
           Efi-505188) From Burkhoderia Ambifaria, With Bound Zn
 pdb|4GXW|B Chain B, Crystal Structure Of A Cog1816 Amidohydrolase (Target
           Efi-505188) From Burkhoderia Ambifaria, With Bound Zn
          Length = 380

 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 96/230 (41%), Gaps = 40/230 (17%)

Query: 4   FASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDL 63
           F ++PKVELH HL G++R  T + LA+  G    I  ++++    + ++ +  +  L  L
Sbjct: 26  FHALPKVELHCHLLGAVRHDTFVALAQRSGAP--IERAEIDAFYARGEKPVGVLHVLRAL 83

Query: 64  IHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDA---VVEGL 120
              L T    + RI  E +ED A+ N+ + E    P    ++ +S   Y DA   +V G+
Sbjct: 84  DRYLLTRPDDLRRIAYEYLEDAAAHNVRHAEFFWNP--TGTVRVSGIPYADAQAAIVTGM 141

Query: 121 RAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVK 180
           R                             +  R   I  RL+ SIDR +  + A+  V 
Sbjct: 142 R-----------------------------DAARDFGIGARLIPSIDREQDPDEAVAIVD 172

Query: 181 LALEMR--DLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEI 228
                R  ++  +GID   N    E   F  A + AR  G + T H GE 
Sbjct: 173 WMKANRADEVAGIGIDYRENDRPPE--LFWKAYRDARAAGFRTTAHAGEF 220


>pdb|3T1G|A Chain A, Engineering Of Organophosphate Hydrolase By Computational
           Design And Directed Evolution
          Length = 353

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 122/261 (46%), Gaps = 37/261 (14%)

Query: 8   PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD-VEHV--IMKSDRSLHE---VFKLF 61
           PKVELH HL+G+I+  T+L   +   ++G+ + +D VE +  I+  D+ L +   + K  
Sbjct: 11  PKVELHVHLSGAIKPETILYFGK---KRGIALPADTVEELRNIIGMDKPLSQPGTLAKWD 67

Query: 62  DLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121
             + V+      + RI  E VE  A E +VY+E+R +P                    L 
Sbjct: 68  YYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPH-------------------LL 108

Query: 122 AVSAVD-VDFASRSIDVRRPVNTKNMNDACN-GTRGKKIYVRLLLSIDRRETTEAAMETV 179
           A S VD + +     DV        +N   + G +   I VR +L   R + +  ++E +
Sbjct: 109 ANSKVDPMPWNQTEGDVTPDDVVDLVNQGLHEGEQAFGIKVRSILCCMRHQPS-WSLEVL 167

Query: 180 KLALEMRDLGVVGIDLSGNPTKGEWTTFLP----ALKFAREQGLQITLHCGEIPNKEEIQ 235
           +L  +     VV +DL G+ T  E ++  P    A + A + G+  T+H GE  + E ++
Sbjct: 168 ELCKKYNQKTVVAMDLIGDETI-EGSSLFPGHVEAYEGAVKNGIHRTVHAGEFGSPEVVR 226

Query: 236 SMLDFLP-QRIGHACCFEEEE 255
             +D L  +R+GH     E+E
Sbjct: 227 EAVDILKTERVGHGYHTIEDE 247


>pdb|1UIO|A Chain A, Adenosine Deaminase (His 238 Ala Mutant)
          Length = 349

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 117/252 (46%), Gaps = 37/252 (14%)

Query: 8   PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD----VEHVI-MKSDRSLHEVFKLFD 62
           PKVELH HL+G+I+  T+L   +   ++G+ + +D    + ++I M    SL      FD
Sbjct: 7   PKVELHVHLDGAIKPETILYFGK---KRGIALPADTVEELRNIIGMDKPLSLPGFLAKFD 63

Query: 63  -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121
             + V+      + RI  E VE  A E +VY+E+R +P                    L 
Sbjct: 64  YYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPH-------------------LL 104

Query: 122 AVSAVD-VDFASRSIDVRRPVNTKNMNDACN-GTRGKKIYVRLLLSIDRRETTEAAMETV 179
           A S VD + +     DV        +N     G +   I VR +L   R + +  ++E +
Sbjct: 105 ANSKVDPMPWNQTEGDVTPDDVVDLVNQGLQEGEQAFGIKVRSILCCMRHQPS-WSLEVL 163

Query: 180 KLALEMRDLGVVGIDLSGNPTKGEWTTFLP----ALKFAREQGLQITLHCGEIPNKEEIQ 235
           +L  +     VV +DL+G+ T  E ++  P    A + A + G+  T+H GE+ + E ++
Sbjct: 164 ELCKKYNQKTVVAMDLAGDETI-EGSSLFPGHVEAYEGAVKNGIHRTVHAGEVGSPEVVR 222

Query: 236 SMLDFLP-QRIG 246
             +D L  +R+G
Sbjct: 223 EAVDILKTERVG 234


>pdb|1UIP|A Chain A, Adenosine Deaminase (His 238 Glu Mutant)
          Length = 349

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 37/254 (14%)

Query: 8   PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD----VEHVI-MKSDRSLHEVFKLFD 62
           PKVELH HL+G+I+  T+L   +   ++G+ + +D    + ++I M    SL      FD
Sbjct: 7   PKVELHVHLDGAIKPETILYFGK---KRGIALPADTVEELRNIIGMDKPLSLPGFLAKFD 63

Query: 63  -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121
             + V+      + RI  E VE  A E +VY+E+R +P                    L 
Sbjct: 64  YYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPH-------------------LL 104

Query: 122 AVSAVD-VDFASRSIDVRRPVNTKNMNDACN-GTRGKKIYVRLLLSIDRRETTEAAMETV 179
           A S VD + +     DV        +N     G +   I VR +L   R + +  ++E +
Sbjct: 105 ANSKVDPMPWNQTEGDVTPDDVVDLVNQGLQEGEQAFGIKVRSILCCMRHQPS-WSLEVL 163

Query: 180 KLALEMRDLGVVGIDLSGNPTKGEWTTFLP----ALKFAREQGLQITLHCGEIPNKEEIQ 235
           +L  +     VV +DL+G+ T  E ++  P    A + A + G+  T+H GE+ + E ++
Sbjct: 164 ELCKKYNQKTVVAMDLAGDETI-EGSSLFPGHVEAYEGAVKNGIHRTVHAGEVGSPEVVR 222

Query: 236 SMLDFLP-QRIGHA 248
             +D L  +R+G  
Sbjct: 223 EAVDILKTERVGEG 236


>pdb|1NDV|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
           Fr117016
 pdb|1NDW|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
           Fr221647
 pdb|1NDY|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
           Fr230513
 pdb|1NDZ|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
           Fr235999
 pdb|1O5R|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With A
           Potent Inhibitor
 pdb|1UML|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With A
           Potent Inhibitor Fr233624
 pdb|1V79|A Chain A, Crystal Structures Of Adenosine Deaminase Complexed With
           Potent Inhibitors
 pdb|1V7A|A Chain A, Crystal Structures Of Adenosine Deaminase Complexed With
           Potent Inhibitors
 pdb|1VFL|A Chain A, Adenosine Deaminase
 pdb|1WXY|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With A
           Potent Inhibitor
 pdb|1WXZ|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With A
           Potent Inhibitor
 pdb|2E1W|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
           Potent Inhibitors
 pdb|2Z7G|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With Ehna
          Length = 356

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 33/252 (13%)

Query: 8   PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD----VEHVI-MKSDRSLHEVFKLFD 62
           PKVELH HL+G+I+  T+L   +    +G+ + +D    ++++I M    +L +    FD
Sbjct: 9   PKVELHVHLDGAIKPETILYYGK---RRGIALPADTPEELQNIIGMDKPLTLPDFLAKFD 65

Query: 63  -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121
             +  +      + RI  E VE  A + +VY+E+R +P     +  SK            
Sbjct: 66  YYMPAIAGCRDAIKRIAYEFVEMKAKDGVVYVEVRYSPHL---LANSK------------ 110

Query: 122 AVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKL 181
            V  +  + A   +     V+  N      G R   + VR +L   R + + ++ E V+L
Sbjct: 111 -VEPIPWNQAEGDLTPDEVVSLVNQG-LQEGERDFGVKVRSILCCMRHQPSWSS-EVVEL 167

Query: 182 ALEMRDLGVVGIDLSGNPTKGEWTTFLP----ALKFAREQGLQITLHCGEIPNKEEIQSM 237
             + R+  VV IDL+G+ T  E ++  P    A   A + G+  T+H GE+ +   ++  
Sbjct: 168 CKKYREQTVVAIDLAGDETI-EGSSLFPGHVQAYAEAVKSGVHRTVHAGEVGSANVVKEA 226

Query: 238 LDFLP-QRIGHA 248
           +D L  +R+GH 
Sbjct: 227 VDTLKTERLGHG 238


>pdb|3OU8|A Chain A, The Crystal Structure Of Adenosine Deaminase From
           Pseudomonas Aeruginosa
 pdb|3OU8|B Chain B, The Crystal Structure Of Adenosine Deaminase From
           Pseudomonas Aeruginosa
 pdb|3PAN|A Chain A, The Crystal Structure Of Adenosine Deaminase With
           Hypoxanthine Bound From Pseudomonas Aeruginosa
 pdb|3PAN|B Chain B, The Crystal Structure Of Adenosine Deaminase With
           Hypoxanthine Bound From Pseudomonas Aeruginosa
 pdb|3PAO|A Chain A, The Crystal Structure Of Adenosine Deaminase With Adenine
           Bound From Pseudomonas Aeruginosa
 pdb|3PAO|B Chain B, The Crystal Structure Of Adenosine Deaminase With Adenine
           Bound From Pseudomonas Aeruginosa
 pdb|3PBM|A Chain A, The Crystal Structure Of Adenosine Deaminase In Complex
           With Chloropurine From Pseudomonas Aeruginosa
 pdb|3PBM|B Chain B, The Crystal Structure Of Adenosine Deaminase In Complex
           With Chloropurine From Pseudomonas Aeruginosa
          Length = 326

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 121/278 (43%), Gaps = 48/278 (17%)

Query: 1   MEWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKL 60
            EW  ++PK ELH HL G++    L  LA     +  + ++DVE   ++   + + + + 
Sbjct: 4   YEWLNALPKAELHLHLEGTLEPELLFALAE--RNRIALPWNDVE--TLRKAYAFNNLQEF 59

Query: 61  FDLIH----VLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAV 116
            DL +    VL T+      +T   ++   ++N+V++E    P+ +   G+      + V
Sbjct: 60  LDLYYAGADVLRTEQ-DFYDLTWAYLQKCKAQNVVHVEPFFDPQTHTDRGIP----FEVV 114

Query: 117 VEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAM 176
           + G+RA        A R                 +G +   I   L+LS  R  + E A 
Sbjct: 115 LAGIRA--------ALR-----------------DGEKLLGIRHGLILSFLRHLSEEQAQ 149

Query: 177 ETVKLALEMRDLGV-VGIDLS--GNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEE 233
           +T+  AL  RD  + VG+D S  G+P     + F      AR +G     H GE    E 
Sbjct: 150 KTLDQALPFRDAFIAVGLDSSEVGHPP----SKFQRVFDRARSEGFLTVAHAGEEGPPEY 205

Query: 234 IQSMLDFLP-QRIGHAC-CFEEEEW-RKLKSSKIPVRI 268
           I   LD L  +RI H    FE+E   R+L   +IP+ +
Sbjct: 206 IWEALDLLKVERIDHGVRAFEDERLXRRLIDEQIPLTV 243


>pdb|2BGN|E Chain E, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
           (1-9) Bound To The Active Site Of Dipeptidyl Peptidase
           Iv (Cd26)
 pdb|2BGN|F Chain F, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
           (1-9) Bound To The Active Site Of Dipeptidyl Peptidase
           Iv (Cd26)
 pdb|2BGN|G Chain G, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
           (1-9) Bound To The Active Site Of Dipeptidyl Peptidase
           Iv (Cd26)
 pdb|2BGN|H Chain H, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
           (1-9) Bound To The Active Site Of Dipeptidyl Peptidase
           Iv (Cd26)
          Length = 363

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 33/252 (13%)

Query: 8   PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEH-----VIMKSDRSLHEVFKLFD 62
           PKVELH HL+G+I+  T+L   +    +G+ + +D        + M    +L +    FD
Sbjct: 10  PKVELHVHLDGAIKPETILYYGK---RRGIALPADTPEELLNIIGMDKPLTLPDFLAKFD 66

Query: 63  -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121
             +  +      + RI  E VE  A + +VY+E+R +P     +  SK            
Sbjct: 67  YYMPAIAGCRDAIKRIAYEFVEMKAKDGVVYVEVRYSPHL---LANSK------------ 111

Query: 122 AVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKL 181
            V  +  + A   +     V+  N      G R   + VR +L   R + + ++ E V+L
Sbjct: 112 -VEPIPWNQAEGDLTPDEVVSLVNQG-LQEGERDFGVKVRSILCCMRHQPSWSS-EVVEL 168

Query: 182 ALEMRDLGVVGIDLSGNPTKGEWTTFLP----ALKFAREQGLQITLHCGEIPNKEEIQSM 237
             + R+  VV IDL+G+ T  E ++  P    A   A + G+  T+H GE+ +   ++  
Sbjct: 169 CKKYREQTVVAIDLAGDETI-EGSSLFPGHVQAYAEAVKSGVHRTVHAGEVGSANVVKEA 227

Query: 238 LDFLP-QRIGHA 248
           +D L  +R+GH 
Sbjct: 228 VDTLKTERLGHG 239


>pdb|1W1I|E Chain E, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
           Cd26) In Complex With Adenosine Deaminase
 pdb|1W1I|F Chain F, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
           Cd26) In Complex With Adenosine Deaminase
 pdb|1W1I|G Chain G, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
           Cd26) In Complex With Adenosine Deaminase
 pdb|1W1I|H Chain H, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
           Cd26) In Complex With Adenosine Deaminase
          Length = 357

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 33/252 (13%)

Query: 8   PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEH-----VIMKSDRSLHEVFKLFD 62
           PKVELH HL+G+I+  T+L   +    +G+ + +D        + M    +L +    FD
Sbjct: 10  PKVELHVHLDGAIKPETILYYGK---RRGIALPADTPEELLNIIGMDKPLTLPDFLAKFD 66

Query: 63  -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121
             +  +      + RI  E VE  A + +VY+E+R +P     +  SK            
Sbjct: 67  YYMPAIAGCRDAIKRIAYEFVEMKAKDGVVYVEVRYSP---HLLANSK------------ 111

Query: 122 AVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKL 181
            V  +  + A   +     V+  N      G R   + VR +L   R + + ++ E V+L
Sbjct: 112 -VEPIPWNQAEGDLTPDEVVSLVNQG-LQEGERDFGVKVRSILCCMRHQPSWSS-EVVEL 168

Query: 182 ALEMRDLGVVGIDLSGNPTKGEWTTFLP----ALKFAREQGLQITLHCGEIPNKEEIQSM 237
             + R+  VV IDL+G+ T  E ++  P    A   A + G+  T+H GE+ +   ++  
Sbjct: 169 CKKYREQTVVAIDLAGDETI-EGSSLFPGHVQAYAEAVKSGVHRTVHAGEVGSANVVKEA 227

Query: 238 LDFLP-QRIGHA 248
           +D L  +R+GH 
Sbjct: 228 VDTLKTERLGHG 239


>pdb|1KRM|A Chain A, Crystal Structure Of Bovine Adenosine Deaminase Complexed
           With 6-Hydroxyl-1,6-Dihydropurine Riboside
 pdb|1QXL|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
           Fr235380
          Length = 356

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 33/252 (13%)

Query: 8   PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEH-----VIMKSDRSLHEVFKLFD 62
           PKVELH HL+G+I+  T+L   +    +G+ + +D        + M    +L +    FD
Sbjct: 9   PKVELHVHLDGAIKPETILYYGK---RRGIALPADTPEELLNIIGMDKPLTLPDFLAKFD 65

Query: 63  -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121
             +  +      + RI  E VE  A + +VY+E+R +P     +  SK            
Sbjct: 66  YYMPAIAGCRDAIKRIAYEFVEMKAKDGVVYVEVRYSP---HLLANSK------------ 110

Query: 122 AVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKL 181
            V  +  + A   +     V+  N      G R   + VR +L   R + + ++ E V+L
Sbjct: 111 -VEPIPWNQAEGDLTPDEVVSLVNQG-LQEGERDFGVKVRSILCCMRHQPSWSS-EVVEL 167

Query: 182 ALEMRDLGVVGIDLSGNPTKGEWTTFLP----ALKFAREQGLQITLHCGEIPNKEEIQSM 237
             + R+  VV IDL+G+ T  E ++  P    A   A + G+  T+H GE+ +   ++  
Sbjct: 168 CKKYREQTVVAIDLAGDETI-EGSSLFPGHVQAYAEAVKSGVHRTVHAGEVGSANVVKEA 226

Query: 238 LDFLP-QRIGHA 248
           +D L  +R+GH 
Sbjct: 227 VDTLKTERLGHG 238


>pdb|3IAR|A Chain A, The Crystal Structure Of Human Adenosine Deaminase
          Length = 367

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 111/252 (44%), Gaps = 33/252 (13%)

Query: 8   PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEH-----VIMKSDRSLHEVFKLFD 62
           PKVELH HL+GSI+  T+L   R    +G+ + ++        + M    +L +    FD
Sbjct: 7   PKVELHVHLDGSIKPETILYYGR---RRGIALPANTAEGLLNVIGMDKPLTLPDFLAKFD 63

Query: 63  -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121
             +  +      + RI  E VE  A E +VY+E+R +P    +  +    +  A  EG  
Sbjct: 64  YYMPAIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVEPIPWNQA--EGDL 121

Query: 122 AVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKL 181
               V V    + +                G R   +  R +L   R +   +  + V+L
Sbjct: 122 TPDEV-VALVGQGLQ--------------EGERDFGVKARSILCCMRHQPNWSP-KVVEL 165

Query: 182 ALEMRDLGVVGIDLSGNPTKGEWTTFLP----ALKFAREQGLQITLHCGEIPNKEEIQSM 237
             + +   VV IDL+G+ T    ++ LP    A + A + G+  T+H GE+ + E ++  
Sbjct: 166 CKKYQQQTVVAIDLAGDETI-PGSSLLPGHVQAYQEAVKSGIHRTVHAGEVGSAEVVKEA 224

Query: 238 LDFLP-QRIGHA 248
           +D L  +R+GH 
Sbjct: 225 VDILKTERLGHG 236


>pdb|2AMX|A Chain A, Crystal Structure Of Plasmodium Yoelii Adenosine Deaminase
           (Py02076)
 pdb|2AMX|B Chain B, Crystal Structure Of Plasmodium Yoelii Adenosine Deaminase
           (Py02076)
          Length = 376

 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 100/256 (39%), Gaps = 37/256 (14%)

Query: 7   MPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDV--EHVIMKSDRSLHEVFKLFDLI 64
           +PKVELH HL+ +      L+ AR    +  +   ++   ++  K  +SL E  +    +
Sbjct: 49  IPKVELHCHLDLTFSAEFFLKWARKYNLQPNMSDDEILDHYLFTKEGKSLAEFIRKAISV 108

Query: 65  HVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKR-NESIGMSKRSYMDAVVEGLRAV 123
             L  D+  +  + +  V +   E +V +E R +P   + S G+       A ++G+   
Sbjct: 109 SDLYRDYDFIEDLAKWAVIEKYKEGVVLMEFRYSPTFVSSSYGLDVELIHKAFIKGI--- 165

Query: 124 SAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLAL 183
                               KN  +  N     KI+V L+   D      +   +   A+
Sbjct: 166 --------------------KNATELLNN----KIHVALICISDTGHAAASIKHSGDFAI 201

Query: 184 EMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE---IPNKEEIQSMLDF 240
           + +    VG D  G     +           R+ GL +T+H GE   +PN   + + ++ 
Sbjct: 202 KHKH-DFVGFDHGGREI--DLKDHKDVYHSVRDHGLHLTVHAGEDATLPNLNTLYTAINI 258

Query: 241 LP-QRIGHACCFEEEE 255
           L  +RIGH     E +
Sbjct: 259 LNVERIGHGIRVSESD 274


>pdb|3RYS|A Chain A, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
           Arthrobacter Aurescens
 pdb|3RYS|B Chain B, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
           Arthrobacter Aurescens
          Length = 343

 Score = 38.1 bits (87), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 116/271 (42%), Gaps = 48/271 (17%)

Query: 8   PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIH-- 65
           P  ELH H+ G+++   +  LA   G +  + + D+E   ++      ++    DL +  
Sbjct: 14  PVAELHLHIEGTLQPELIFALAERNGIE--LPYEDIEE--LREKYEFTDLQSFLDLYYAN 69

Query: 66  --VLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAV 123
             VL T+    T +T+  +E  A+  + + E+   P+ + S G++  + ++ V     A+
Sbjct: 70  MAVLQTEQ-DFTDMTRAYLERAAAGGVRHAEIMMDPQAHTSRGVALETCVNGVA---NAL 125

Query: 124 SAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLAL 183
           +  + DF   ++                          L+ +  R  + ++A+E +   L
Sbjct: 126 ATSEEDFGVSTL--------------------------LIAAFLRDMSEDSALEVLDQLL 159

Query: 184 EMR-DLGVVGIDLS--GNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDF 240
            M   +  +G+D +  GNP     + F    + A E GL+   H GE      I   LD 
Sbjct: 160 AMHAPIAGIGLDSAEVGNPP----SKFERLYQRAAEAGLRRIAHAGEEGPASYITEALDV 215

Query: 241 LP-QRIGHAC-CFEEEE-WRKLKSSKIPVRI 268
           L  +RI H   C E+ +  ++L + ++P+ +
Sbjct: 216 LHVERIDHGIRCMEDTDVVQRLVAEQVPLTV 246


>pdb|3EWC|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodial
           Vivax In Complex With Mt-Coformycin
          Length = 371

 Score = 37.4 bits (85), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 98/259 (37%), Gaps = 57/259 (22%)

Query: 7   MPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVE----HVIMKSDRSLHE----VF 58
           +PK ELH HL+        +   R    +  +  SD E    ++  K  +SL E      
Sbjct: 36  IPKCELHCHLDLCFSADFFVSCIRKYNLQPNL--SDEEVLDYYLFAKGGKSLGEFVEKAI 93

Query: 59  KLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTP-----KRNESIGMSKRSYM 113
           K+ D+ H    D+  +  + +  V +   E +V +E R +P     K N  I +  +   
Sbjct: 94  KVADIFH----DYEVIEDLAKHAVFNKYKEGVVLMEFRYSPTFVAFKYNLDIELIHQ--- 146

Query: 114 DAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTE 173
            A+V+G++ V  +                              KI+V L+   D      
Sbjct: 147 -AIVKGIKEVVEL---------------------------LDHKIHVALMCIGDTGHEAA 178

Query: 174 AAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE---IPN 230
               +    L+ +    VG D  G+    +   +     + RE G+ +++H GE   +PN
Sbjct: 179 NIKASADFCLKHK-ADFVGFDHGGHEV--DLKEYKEIFDYVRESGVPLSVHAGEDVTLPN 235

Query: 231 KEEIQSMLDFLP-QRIGHA 248
              + S +  L  +RIGH 
Sbjct: 236 LNTLYSAIQVLKVERIGHG 254


>pdb|3EWD|A Chain A, Crystal Structure Of Adenosine Deaminase Mutant (Delta
           Asp172) From Plasmodium Vivax In Complex With
           Mt-Coformycin
          Length = 370

 Score = 35.4 bits (80), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 100/259 (38%), Gaps = 58/259 (22%)

Query: 7   MPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVE----HVIMKSDRSLHE----VF 58
           +PK ELH HL+        +   R    +  +  SD E    ++  K  +SL E      
Sbjct: 36  IPKCELHCHLDLCFSADFFVSCIRKYNLQPNL--SDEEVLDYYLFAKGGKSLGEFVEKAI 93

Query: 59  KLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTP-----KRNESIGMSKRSYM 113
           K+ D+ H    D+  +  + +  V +   E +V +E R +P     K N  I +  +   
Sbjct: 94  KVADIFH----DYEVIEDLAKHAVFNKYKEGVVLMEFRYSPTFVAFKYNLDIELIHQ--- 146

Query: 114 DAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTE 173
            A+V+G++ V    V+     I V            C GT  +   ++            
Sbjct: 147 -AIVKGIKEV----VELLDHKIHVAL---------MCIGTGHEAANIK------------ 180

Query: 174 AAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE---IPN 230
               +    L+ +    VG D  G+    +   +     + RE G+ +++H GE   +PN
Sbjct: 181 ---ASADFCLKHK-ADFVGFDHGGHEV--DLKEYKEIFDYVRESGVPLSVHAGEDVTLPN 234

Query: 231 KEEIQSMLDFLP-QRIGHA 248
              + S +  L  +RIGH 
Sbjct: 235 LNTLYSAIQVLKVERIGHG 253


>pdb|2PGF|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
           Vivax In Complex With Adenosine
 pdb|2PGR|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
           Vivax In Complex With Pentostatin
 pdb|2QVN|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
           Vivax In Complex With Guanosine
          Length = 371

 Score = 35.0 bits (79), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 96/259 (37%), Gaps = 57/259 (22%)

Query: 7   MPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVE----HVIMKSDRSLHE----VF 58
           +PK ELH HL+        +   R    +  +  SD E    ++  K  +SL E      
Sbjct: 44  IPKCELHCHLDLCFSADFFVSCIRKYNLQPNL--SDEEVLDYYLFAKGGKSLGEFVEKAI 101

Query: 59  KLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTP-----KRNESIGMSKRSYM 113
           K+ D+ H    D+  +  + +  V +   E +V  E R +P     K N  I +  +   
Sbjct: 102 KVADIFH----DYEVIEDLAKHAVFNKYKEGVVLXEFRYSPTFVAFKYNLDIELIHQ--- 154

Query: 114 DAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTE 173
            A+V+G++ V  +                              KI+V L    D      
Sbjct: 155 -AIVKGIKEVVEL---------------------------LDHKIHVALXCIGDTGHEAA 186

Query: 174 AAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE---IPN 230
               +    L+ +    VG D  G+    +   +     + RE G+ +++H GE   +PN
Sbjct: 187 NIKASADFCLKHK-ADFVGFDHGGHEV--DLKEYKEIFDYVRESGVPLSVHAGEDVTLPN 243

Query: 231 KEEIQSMLDFLP-QRIGHA 248
              + S +  L  +RIGH 
Sbjct: 244 LNTLYSAIQVLKVERIGHG 262


>pdb|3KSU|A Chain A, Crystal Structure Of Short-Chain Dehydrogenase From
           Oenococcus Oeni Psu-1
 pdb|3KSU|B Chain B, Crystal Structure Of Short-Chain Dehydrogenase From
           Oenococcus Oeni Psu-1
          Length = 262

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 215 REQGLQITLHCGEIPNKEEIQSMLDFLPQRIG 246
            +QG ++ L+  ++ N+EE+  + DF  +  G
Sbjct: 59  EDQGAKVALYQSDLSNEEEVAKLFDFAEKEFG 90


>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
           Inhibiting Protein), A Leucine Rich Repeat Protein
           Involved In Plant Defense
          Length = 313

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 169 RETTEAAMETVKLALEMRDLGVV----GIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224
           + T +  +    LA ++  +G+     G+DL  N   G     L  LKF     +     
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 225 CGEIPNKEEIQ 235
           CGEIP    +Q
Sbjct: 281 CGEIPQGGNLQ 291


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,256,575
Number of Sequences: 62578
Number of extensions: 271470
Number of successful extensions: 736
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 44
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)