Query 024296
Match_columns 269
No_of_seqs 131 out of 1261
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 03:32:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00124 adenosine deaminase; 100.0 2.4E-55 5.2E-60 406.1 27.2 235 2-269 30-276 (362)
2 cd01321 ADGF Adenosine deamina 100.0 7.8E-53 1.7E-57 388.1 25.7 218 1-269 18-252 (345)
3 KOG1097 Adenine deaminase/aden 100.0 2.6E-50 5.7E-55 367.7 24.9 237 1-269 40-295 (399)
4 PF00962 A_deaminase: Adenosin 100.0 7.7E-50 1.7E-54 366.4 24.4 231 7-269 2-247 (331)
5 cd00443 ADA_AMPD Adenosine/AMP 100.0 4E-49 8.6E-54 358.6 25.1 209 7-269 1-220 (305)
6 COG1816 Add Adenosine deaminas 100.0 1.3E-47 2.8E-52 349.2 23.0 236 2-269 6-252 (345)
7 PRK09358 adenosine deaminase; 100.0 2.7E-45 5.9E-50 337.9 26.4 237 1-269 4-249 (340)
8 TIGR01431 adm_rel adenosine de 100.0 1.3E-44 2.9E-49 344.8 23.9 239 2-269 72-378 (479)
9 TIGR01430 aden_deam adenosine 100.0 5.8E-43 1.2E-47 320.4 27.4 231 7-269 1-239 (324)
10 cd01320 ADA Adenosine deaminas 100.0 1.1E-40 2.4E-45 305.1 27.5 232 6-269 1-240 (325)
11 cd01319 AMPD AMP deaminase (AM 99.7 1.2E-15 2.7E-20 145.6 18.2 228 4-269 55-378 (496)
12 TIGR01224 hutI imidazoloneprop 99.7 1.7E-14 3.7E-19 134.3 21.0 165 69-269 88-261 (377)
13 TIGR01429 AMP_deaminase AMP de 99.6 5.3E-15 1.2E-19 143.6 13.5 160 73-269 274-490 (611)
14 PLN03055 AMP deaminase; Provis 99.6 8E-15 1.7E-19 142.0 13.1 227 5-269 146-468 (602)
15 PLN02768 AMP deaminase 99.6 1E-14 2.2E-19 143.8 13.8 227 5-269 379-701 (835)
16 PTZ00310 AMP deaminase; Provis 99.5 5.5E-14 1.2E-18 145.4 14.2 160 73-269 948-1161(1453)
17 cd01296 Imidazolone-5PH Imidaz 99.5 1.4E-12 3E-17 121.2 19.4 163 69-269 85-257 (371)
18 PRK09230 cytosine deaminase; P 99.3 1.4E-10 3.1E-15 110.3 15.9 165 67-269 93-275 (426)
19 PRK09356 imidazolonepropionase 98.9 2.5E-07 5.4E-12 87.1 21.1 165 69-269 113-286 (406)
20 PTZ00310 AMP deaminase; Provis 98.9 1.6E-07 3.6E-12 98.2 18.7 50 219-269 480-531 (1453)
21 cd01292 metallo-dependent_hydr 98.8 3.6E-07 7.8E-12 79.5 17.0 167 67-269 26-202 (275)
22 cd01298 ATZ_TRZ_like TRZ/ATZ f 98.8 7E-07 1.5E-11 83.7 18.2 170 53-269 78-272 (411)
23 PRK08393 N-ethylammeline chlor 98.7 5.5E-07 1.2E-11 85.6 17.4 170 53-269 76-267 (424)
24 cd01305 archeal_chlorohydrolas 98.5 7.7E-06 1.7E-10 72.6 17.2 63 207-269 127-192 (263)
25 cd01293 Bact_CD Bacterial cyto 98.5 3.6E-06 7.8E-11 78.4 14.1 164 68-269 88-269 (398)
26 PRK07583 cytosine deaminase-li 98.1 9.2E-05 2E-09 70.8 15.8 66 204-269 211-292 (438)
27 PRK08204 hypothetical protein; 97.9 0.00086 1.9E-08 64.1 17.7 78 191-269 188-272 (449)
28 cd01299 Met_dep_hydrolase_A Me 97.9 0.00013 2.8E-09 67.0 11.4 96 171-269 118-221 (342)
29 PRK14085 imidazolonepropionase 97.9 4.8E-05 1E-09 71.4 7.9 77 193-269 195-271 (382)
30 PRK07213 chlorohydrolase; Prov 97.8 8.8E-05 1.9E-09 69.5 9.4 79 190-269 165-255 (375)
31 PRK06886 hypothetical protein; 97.8 0.0012 2.6E-08 61.0 16.1 179 52-269 46-242 (329)
32 KOG1096 Adenosine monophosphat 97.8 0.00012 2.5E-09 71.7 9.4 210 4-251 314-618 (768)
33 PRK06687 chlorohydrolase; Vali 97.7 0.003 6.5E-08 59.9 18.2 67 203-269 194-274 (419)
34 cd01313 Met_dep_hydrolase_E Me 97.7 0.012 2.6E-07 55.9 22.1 164 69-269 84-284 (418)
35 PRK08203 hydroxydechloroatrazi 97.7 0.008 1.7E-07 57.6 20.2 81 189-269 197-292 (451)
36 PRK09228 guanine deaminase; Pr 97.6 0.011 2.3E-07 56.6 20.0 67 203-269 209-292 (433)
37 cd01303 GDEase Guanine deamina 97.6 0.012 2.5E-07 56.2 20.2 68 202-269 205-289 (429)
38 TIGR02022 hutF formiminoglutam 97.6 0.01 2.2E-07 57.1 19.9 166 69-269 93-293 (455)
39 TIGR02967 guan_deamin guanine 97.6 0.0067 1.4E-07 57.1 18.4 67 203-269 184-267 (401)
40 PRK06380 metal-dependent hydro 97.6 0.009 1.9E-07 56.6 18.7 77 190-269 172-264 (418)
41 PRK05985 cytosine deaminase; P 97.6 0.002 4.3E-08 60.6 14.0 165 68-269 90-271 (391)
42 PRK06038 N-ethylammeline chlor 97.6 0.0062 1.3E-07 58.1 17.4 67 203-269 188-268 (430)
43 TIGR03314 Se_ssnA putative sel 97.5 0.0081 1.8E-07 57.5 18.1 67 203-269 202-282 (441)
44 PRK12393 amidohydrolase; Provi 97.5 0.009 1.9E-07 57.5 18.3 75 193-269 206-296 (457)
45 PRK09229 N-formimino-L-glutama 97.4 0.021 4.6E-07 54.9 19.0 78 190-269 202-293 (456)
46 PRK07203 putative chlorohydrol 97.2 0.029 6.2E-07 53.6 18.0 67 203-269 203-283 (442)
47 PRK07572 cytosine deaminase; V 97.2 0.0083 1.8E-07 57.1 14.0 65 205-269 191-271 (426)
48 PRK15493 5-methylthioadenosine 97.2 0.058 1.2E-06 51.6 18.9 67 203-269 195-275 (435)
49 cd01312 Met_dep_hydrolase_D Me 97.1 0.073 1.6E-06 50.0 18.9 68 202-269 160-259 (381)
50 PRK07228 N-ethylammeline chlor 96.9 0.13 2.7E-06 49.2 18.5 67 203-269 197-277 (445)
51 PRK08418 chlorohydrolase; Prov 96.6 0.2 4.3E-06 47.5 17.8 67 203-269 188-282 (408)
52 PRK06846 putative deaminase; V 96.0 0.34 7.4E-06 45.8 15.7 90 176-268 178-285 (410)
53 PRK09045 N-ethylammeline chlor 95.9 0.077 1.7E-06 50.7 10.9 66 202-269 199-280 (443)
54 PRK06151 N-ethylammeline chlor 95.8 0.085 1.8E-06 51.2 10.9 68 202-269 218-308 (488)
55 cd03174 DRE_TIM_metallolyase D 95.7 0.72 1.6E-05 40.5 15.3 209 15-265 11-248 (265)
56 cd07948 DRE_TIM_HCS Saccharomy 95.5 1 2.2E-05 40.3 15.6 135 81-249 76-217 (262)
57 COG0402 SsnA Cytosine deaminas 95.0 3 6.5E-05 39.6 18.3 158 66-269 93-276 (421)
58 cd07939 DRE_TIM_NifV Streptomy 94.9 1 2.2E-05 39.9 13.9 151 82-265 75-241 (259)
59 cd01300 YtcJ_like YtcJ_like me 94.9 0.073 1.6E-06 51.3 7.0 67 203-269 293-368 (479)
60 TIGR02090 LEU1_arch isopropylm 94.8 1.3 2.9E-05 41.4 15.0 137 79-249 74-217 (363)
61 PRK05692 hydroxymethylglutaryl 94.8 2.6 5.7E-05 38.1 16.4 150 83-265 86-263 (287)
62 PRK14042 pyruvate carboxylase 94.3 3.6 7.9E-05 41.1 17.2 149 75-265 95-255 (596)
63 PRK11858 aksA trans-homoaconit 94.2 2.2 4.8E-05 40.1 15.0 133 81-247 80-219 (378)
64 TIGR00010 hydrolase, TatD fami 93.9 0.9 2E-05 39.3 11.1 81 187-269 83-173 (252)
65 cd07938 DRE_TIM_HMGL 3-hydroxy 93.7 5.1 0.00011 36.0 16.5 131 82-246 79-223 (274)
66 cd01310 TatD_DNAse TatD like p 93.4 0.99 2.1E-05 39.0 10.5 80 188-269 84-173 (251)
67 cd07940 DRE_TIM_IPMS 2-isoprop 93.1 3.1 6.7E-05 37.1 13.3 141 90-263 87-245 (268)
68 cd07945 DRE_TIM_CMS Leptospira 93.1 5.6 0.00012 35.9 15.0 150 81-264 79-249 (280)
69 cd07941 DRE_TIM_LeuA3 Desulfob 92.9 5.8 0.00013 35.5 14.9 135 81-249 83-228 (273)
70 PF00682 HMGL-like: HMGL-like 92.6 4.1 8.9E-05 35.3 13.2 138 79-249 70-214 (237)
71 TIGR02660 nifV_homocitr homoci 92.6 5.1 0.00011 37.4 14.6 132 82-246 78-215 (365)
72 COG1228 HutI Imidazolonepropio 92.5 0.3 6.4E-06 46.5 6.1 60 202-264 217-278 (406)
73 PRK08195 4-hyroxy-2-oxovalerat 91.9 7.7 0.00017 36.0 14.6 106 157-265 128-247 (337)
74 PRK09389 (R)-citramalate synth 91.6 8.5 0.00018 37.6 15.3 133 82-247 79-217 (488)
75 PF07969 Amidohydro_3: Amidohy 91.6 0.61 1.3E-05 43.5 7.2 63 203-268 223-290 (404)
76 PRK12581 oxaloacetate decarbox 91.5 11 0.00025 36.5 15.7 146 76-265 105-264 (468)
77 PRK12331 oxaloacetate decarbox 91.3 11 0.00025 36.3 15.5 145 77-265 97-255 (448)
78 PLN02746 hydroxymethylglutaryl 91.1 11 0.00023 35.3 14.6 148 84-265 129-305 (347)
79 TIGR03217 4OH_2_O_val_ald 4-hy 91.1 5.4 0.00012 36.9 12.7 105 157-264 127-245 (333)
80 PRK15108 biotin synthase; Prov 91.0 3 6.4E-05 38.8 11.0 81 170-252 76-157 (345)
81 PRK14041 oxaloacetate decarbox 90.2 12 0.00026 36.3 14.7 147 75-265 94-254 (467)
82 PRK07094 biotin synthase; Prov 89.8 1.6 3.4E-05 39.9 8.0 85 171-259 71-158 (323)
83 cd01306 PhnM PhnM is believed 89.6 3.2 7E-05 38.3 9.9 61 204-268 162-222 (325)
84 TIGR01108 oadA oxaloacetate de 89.4 16 0.00036 36.4 15.3 146 76-265 91-250 (582)
85 PRK09282 pyruvate carboxylase 88.8 17 0.00037 36.4 14.9 145 76-264 96-254 (592)
86 cd07937 DRE_TIM_PC_TC_5S Pyruv 88.5 18 0.00039 32.4 15.8 144 78-265 93-250 (275)
87 cd07944 DRE_TIM_HOA_like 4-hyd 88.3 18 0.00039 32.2 15.3 89 157-249 122-216 (266)
88 COG1099 Predicted metal-depend 88.2 9.3 0.0002 33.5 11.0 106 154-263 60-177 (254)
89 cd07943 DRE_TIM_HOA 4-hydroxy- 87.8 19 0.00041 31.9 14.6 106 157-265 125-243 (263)
90 PRK13207 ureC urease subunit a 87.4 2.3 5E-05 42.2 7.7 76 188-264 212-294 (568)
91 TIGR03278 methan_mark_10 putat 87.1 5.8 0.00013 37.8 10.0 91 168-258 52-146 (404)
92 cd00530 PTE Phosphotriesterase 87.1 2.4 5.3E-05 37.8 7.3 65 205-269 136-207 (293)
93 TIGR01496 DHPS dihydropteroate 86.8 4.4 9.5E-05 36.1 8.6 92 170-267 20-122 (257)
94 TIGR00433 bioB biotin syntheta 86.8 5.9 0.00013 35.4 9.6 45 209-254 102-146 (296)
95 PRK06256 biotin synthase; Vali 86.5 6.1 0.00013 36.2 9.7 86 168-255 89-176 (336)
96 PRK06740 histidinol-phosphatas 86.3 18 0.00039 33.4 12.6 79 9-96 2-81 (331)
97 PRK12344 putative alpha-isopro 85.9 29 0.00063 34.2 14.5 135 81-249 90-234 (524)
98 PF08187 Tetradecapep: Myoacti 85.6 0.24 5.2E-06 23.3 -0.0 9 241-249 6-14 (14)
99 COG0119 LeuA Isopropylmalate/h 85.5 35 0.00075 32.6 17.9 140 73-246 73-221 (409)
100 PRK00915 2-isopropylmalate syn 85.3 18 0.00038 35.6 12.7 126 87-246 90-226 (513)
101 PRK12330 oxaloacetate decarbox 85.2 40 0.00087 33.1 18.9 146 76-265 97-258 (499)
102 PRK05265 pyridoxine 5'-phospha 84.1 3.3 7.3E-05 36.4 6.3 64 176-246 76-152 (239)
103 PRK14024 phosphoribosyl isomer 83.5 9.2 0.0002 33.5 9.1 71 187-261 46-119 (241)
104 COG1574 Predicted metal-depend 83.3 3.3 7.1E-05 40.9 6.6 63 203-268 319-393 (535)
105 PRK06801 hypothetical protein; 82.6 16 0.00035 33.1 10.4 97 171-268 27-133 (286)
106 PLN03228 methylthioalkylmalate 82.5 22 0.00048 34.9 11.9 109 104-246 199-316 (503)
107 cd01335 Radical_SAM Radical SA 81.9 12 0.00027 30.1 8.8 70 188-258 43-116 (204)
108 PRK14040 oxaloacetate decarbox 81.7 61 0.0013 32.5 15.8 144 77-264 98-255 (593)
109 TIGR00973 leuA_bact 2-isopropy 81.4 30 0.00064 33.9 12.4 109 104-246 107-223 (494)
110 PRK00507 deoxyribose-phosphate 81.3 36 0.00077 29.6 12.6 85 157-248 121-208 (221)
111 PRK10812 putative DNAse; Provi 81.1 6.7 0.00015 35.0 7.3 61 206-268 112-176 (265)
112 TIGR00977 LeuA_rel 2-isopropyl 79.9 50 0.0011 32.6 13.5 134 82-249 87-231 (526)
113 cd01307 Met_dep_hydrolase_B Me 79.2 18 0.0004 33.0 9.8 82 186-268 127-223 (338)
114 COG3964 Predicted amidohydrola 78.9 10 0.00022 34.9 7.5 85 182-268 146-246 (386)
115 cd01309 Met_dep_hydrolase_C Me 78.0 3.6 7.7E-05 38.2 4.8 61 207-269 182-244 (359)
116 PRK08508 biotin synthase; Prov 77.8 18 0.00039 32.4 9.1 77 170-250 40-121 (279)
117 PRK15446 phosphonate metabolis 77.6 8.9 0.00019 36.0 7.3 61 203-267 212-272 (383)
118 PRK10076 pyruvate formate lyas 77.5 29 0.00062 30.0 9.9 99 169-268 18-132 (213)
119 TIGR02318 phosphono_phnM phosp 77.5 9.1 0.0002 35.9 7.3 62 204-269 208-269 (376)
120 TIGR01182 eda Entner-Doudoroff 77.3 46 0.001 28.6 11.7 95 163-266 10-104 (204)
121 TIGR00559 pdxJ pyridoxine 5'-p 75.6 9.1 0.0002 33.7 6.2 64 176-246 73-149 (237)
122 cd00947 TBP_aldolase_IIB Tagat 75.4 33 0.00071 31.0 10.0 96 171-268 22-128 (276)
123 PF01261 AP_endonuc_2: Xylose 75.2 44 0.00096 27.4 12.8 128 82-246 1-160 (213)
124 cd00003 PNPsynthase Pyridoxine 74.8 9.9 0.00021 33.4 6.3 64 176-246 73-149 (234)
125 PRK07998 gatY putative fructos 74.2 31 0.00068 31.2 9.6 97 170-268 26-133 (283)
126 PLN02321 2-isopropylmalate syn 73.9 63 0.0014 32.7 12.5 109 104-246 200-317 (632)
127 PLN02389 biotin synthase 73.7 17 0.00036 34.3 8.0 95 170-266 116-229 (379)
128 cd00854 NagA N-acetylglucosami 73.7 78 0.0017 29.5 13.8 91 160-263 162-261 (374)
129 TIGR01235 pyruv_carbox pyruvat 73.4 1.2E+02 0.0026 33.0 15.1 147 75-263 624-788 (1143)
130 cd01297 D-aminoacylase D-amino 73.3 28 0.0006 32.9 9.5 99 171-269 162-282 (415)
131 KOG3968 Atrazine chlorohydrola 73.2 79 0.0017 30.3 12.1 64 206-269 221-300 (439)
132 COG0854 PdxJ Pyridoxal phospha 72.7 12 0.00027 32.6 6.2 63 177-246 75-150 (243)
133 cd07942 DRE_TIM_LeuA Mycobacte 71.9 77 0.0017 28.6 12.6 136 104-265 110-267 (284)
134 cd04734 OYE_like_3_FMN Old yel 71.2 87 0.0019 29.0 17.7 165 70-263 132-332 (343)
135 cd00452 KDPG_aldolase KDPG and 71.2 60 0.0013 27.1 12.1 50 208-261 87-139 (190)
136 PRK09240 thiH thiamine biosynt 69.9 49 0.0011 31.0 10.2 88 168-259 102-192 (371)
137 PF03740 PdxJ: Pyridoxal phosp 69.3 9.1 0.0002 33.8 4.8 64 176-246 74-150 (239)
138 PRK12999 pyruvate carboxylase; 68.9 1.8E+02 0.0039 31.7 15.9 146 77-264 628-791 (1146)
139 COG0084 TatD Mg-dependent DNas 68.8 86 0.0019 27.9 11.0 79 187-267 86-175 (256)
140 PRK12737 gatY tagatose-bisphos 68.7 54 0.0012 29.7 9.8 95 171-268 27-133 (284)
141 PRK09197 fructose-bisphosphate 68.6 22 0.00048 33.2 7.4 99 170-268 29-164 (350)
142 PRK09061 D-glutamate deacylase 68.3 47 0.001 32.5 10.1 98 171-269 164-283 (509)
143 PRK06015 keto-hydroxyglutarate 67.5 80 0.0017 27.1 11.6 95 163-266 6-100 (201)
144 PRK12394 putative metallo-depe 67.4 42 0.0009 31.3 9.2 63 203-266 171-245 (379)
145 smart00148 PLCXc Phospholipase 67.1 47 0.001 26.4 8.2 20 81-100 33-52 (135)
146 COG0800 Eda 2-keto-3-deoxy-6-p 66.8 86 0.0019 27.2 10.2 94 163-266 15-109 (211)
147 TIGR03583 EF_0837 probable ami 66.8 54 0.0012 30.2 9.8 62 187-250 143-210 (365)
148 PRK13209 L-xylulose 5-phosphat 66.7 91 0.002 27.4 13.1 21 79-99 24-44 (283)
149 PLN02826 dihydroorotate dehydr 66.4 1.2E+02 0.0027 28.9 15.0 151 88-264 215-397 (409)
150 PRK08445 hypothetical protein; 65.9 67 0.0015 29.8 10.2 87 171-259 74-174 (348)
151 cd07947 DRE_TIM_Re_CS Clostrid 65.5 1E+02 0.0023 27.7 14.6 152 83-264 81-261 (279)
152 PRK07709 fructose-bisphosphate 65.3 42 0.00091 30.4 8.4 79 170-251 156-236 (285)
153 PRK08185 hypothetical protein; 65.3 36 0.00078 30.8 8.0 79 171-251 150-231 (283)
154 cd00453 FTBP_aldolase_II Fruct 65.0 73 0.0016 29.6 10.0 98 171-268 22-157 (340)
155 COG0826 Collagenase and relate 64.5 33 0.00072 32.0 7.8 91 176-269 16-119 (347)
156 TIGR01858 tag_bisphos_ald clas 64.2 38 0.00082 30.7 7.9 97 171-268 25-131 (282)
157 TIGR03699 mena_SCO4550 menaqui 64.2 36 0.00079 31.2 8.1 76 170-248 72-160 (340)
158 PRK03739 2-isopropylmalate syn 63.8 1.5E+02 0.0033 29.4 12.7 119 104-249 139-270 (552)
159 cd01295 AdeC Adenine deaminase 63.5 48 0.001 31.5 8.9 78 188-268 102-181 (422)
160 TIGR03151 enACPred_II putative 63.2 1E+02 0.0023 28.0 10.7 78 176-266 77-164 (307)
161 COG2159 Predicted metal-depend 63.1 25 0.00054 31.9 6.6 43 188-230 125-169 (293)
162 cd04735 OYE_like_4_FMN Old yel 62.6 1.3E+02 0.0028 27.9 17.4 168 70-262 135-329 (353)
163 PRK07114 keto-hydroxyglutarate 62.5 1.1E+02 0.0023 26.8 12.5 23 76-98 27-49 (222)
164 PRK14847 hypothetical protein; 62.3 1.3E+02 0.0029 27.9 14.2 127 91-246 127-270 (333)
165 PRK09237 dihydroorotase; Provi 61.1 55 0.0012 30.4 8.8 81 187-268 147-242 (380)
166 COG5016 Pyruvate/oxaloacetate 61.1 1.6E+02 0.0034 28.3 18.4 90 157-250 138-233 (472)
167 cd04740 DHOD_1B_like Dihydroor 60.9 1.2E+02 0.0027 27.0 15.9 45 209-254 221-268 (296)
168 PRK06806 fructose-bisphosphate 60.7 62 0.0013 29.2 8.7 97 170-268 26-133 (281)
169 cd02803 OYE_like_FMN_family Ol 60.6 1.3E+02 0.0028 27.2 18.6 163 70-261 132-326 (327)
170 TIGR01859 fruc_bis_ald_ fructo 60.5 59 0.0013 29.3 8.5 97 171-267 25-132 (282)
171 TIGR02351 thiH thiazole biosyn 60.1 78 0.0017 29.5 9.6 85 170-258 103-190 (366)
172 PF01026 TatD_DNase: TatD rela 60.0 38 0.00083 29.7 7.2 61 205-267 111-175 (255)
173 PF04262 Glu_cys_ligase: Gluta 59.7 8.1 0.00018 36.4 2.9 32 81-112 311-343 (377)
174 PRK08610 fructose-bisphosphate 59.7 51 0.0011 29.9 7.9 99 170-268 26-136 (286)
175 PRK12738 kbaY tagatose-bisphos 59.2 52 0.0011 29.8 7.9 97 171-268 27-133 (286)
176 PRK09195 gatY tagatose-bisphos 58.9 48 0.001 30.0 7.6 98 170-268 26-133 (284)
177 PRK08610 fructose-bisphosphate 58.5 62 0.0013 29.4 8.2 80 170-251 156-236 (286)
178 TIGR00856 pyrC_dimer dihydroor 58.4 53 0.0011 30.4 8.0 40 189-228 92-138 (341)
179 PF04909 Amidohydro_2: Amidohy 58.3 42 0.00092 28.8 7.1 53 172-226 83-138 (273)
180 cd00452 KDPG_aldolase KDPG and 58.1 1.1E+02 0.0024 25.5 11.5 96 163-267 6-101 (190)
181 PRK13585 1-(5-phosphoribosyl)- 57.8 76 0.0017 27.4 8.6 83 178-262 37-121 (241)
182 cd04738 DHOD_2_like Dihydrooro 57.7 1.5E+02 0.0033 27.1 14.5 43 218-261 280-325 (327)
183 COG1856 Uncharacterized homolo 57.4 21 0.00045 31.4 4.7 54 176-229 42-99 (275)
184 PF01081 Aldolase: KDPG and KH 57.3 83 0.0018 26.9 8.4 95 163-266 10-104 (196)
185 TIGR01434 glu_cys_ligase gluta 57.3 13 0.00028 36.5 3.9 31 81-111 310-341 (512)
186 TIGR00510 lipA lipoate synthas 57.2 1E+02 0.0023 28.1 9.6 89 171-260 92-185 (302)
187 PF13407 Peripla_BP_4: Peripla 57.2 54 0.0012 27.9 7.6 77 112-226 12-89 (257)
188 PRK11449 putative deoxyribonuc 56.6 1.4E+02 0.0031 26.3 11.3 76 189-266 91-176 (258)
189 PRK02107 glutamate--cysteine l 56.6 13 0.00029 36.5 3.9 31 81-111 314-345 (523)
190 PLN02446 (5-phosphoribosyl)-5- 56.2 70 0.0015 28.6 8.1 69 187-262 57-131 (262)
191 PRK12738 kbaY tagatose-bisphos 56.2 68 0.0015 29.1 8.1 78 171-251 156-235 (286)
192 cd03174 DRE_TIM_metallolyase D 56.0 1.4E+02 0.0029 25.9 11.7 21 78-98 21-41 (265)
193 smart00729 Elp3 Elongator prot 55.8 1E+02 0.0022 24.9 8.8 86 169-254 29-124 (216)
194 PRK07709 fructose-bisphosphate 55.2 82 0.0018 28.6 8.5 97 170-268 26-136 (285)
195 cd00959 DeoC 2-deoxyribose-5-p 54.6 1.3E+02 0.0029 25.4 13.7 127 82-246 75-201 (203)
196 COG0107 HisF Imidazoleglycerol 54.2 73 0.0016 28.2 7.6 82 178-262 32-119 (256)
197 TIGR01858 tag_bisphos_ald clas 53.7 35 0.00077 30.8 5.9 79 171-251 154-233 (282)
198 PRK13586 1-(5-phosphoribosyl)- 53.4 1.4E+02 0.0029 26.1 9.4 72 187-262 44-118 (232)
199 PRK13753 dihydropteroate synth 53.3 1.3E+02 0.0027 27.3 9.3 92 170-268 22-124 (279)
200 PRK12737 gatY tagatose-bisphos 53.2 76 0.0017 28.7 8.0 88 171-261 156-249 (284)
201 TIGR03551 F420_cofH 7,8-dideme 53.0 75 0.0016 29.3 8.1 72 170-245 70-155 (343)
202 PRK05718 keto-hydroxyglutarate 52.9 1.5E+02 0.0033 25.5 11.5 95 163-266 17-111 (212)
203 PRK12857 fructose-1,6-bisphosp 52.5 81 0.0018 28.5 8.0 97 171-268 27-133 (284)
204 PRK07315 fructose-bisphosphate 52.5 82 0.0018 28.6 8.1 98 170-268 26-135 (293)
205 TIGR03471 HpnJ hopanoid biosyn 52.4 1.2E+02 0.0026 29.2 9.7 91 168-259 225-316 (472)
206 TIGR01520 FruBisAldo_II_A fruc 52.3 2.1E+02 0.0045 26.9 11.7 99 170-268 35-171 (357)
207 PRK08185 hypothetical protein; 51.8 88 0.0019 28.3 8.1 97 170-268 21-127 (283)
208 PLN02428 lipoic acid synthase 51.5 1.5E+02 0.0033 27.7 9.8 87 173-260 133-224 (349)
209 PRK09140 2-dehydro-3-deoxy-6-p 51.3 1.6E+02 0.0034 25.2 10.7 95 163-266 12-107 (206)
210 TIGR00167 cbbA ketose-bisphosp 51.3 85 0.0018 28.5 8.0 98 171-268 27-136 (288)
211 cd01294 DHOase Dihydroorotase 51.2 93 0.002 28.4 8.4 63 205-269 113-191 (335)
212 PF01081 Aldolase: KDPG and KH 51.1 1.6E+02 0.0034 25.2 10.6 21 78-98 22-42 (196)
213 PRK06015 keto-hydroxyglutarate 51.0 1.6E+02 0.0034 25.2 11.5 22 77-98 17-38 (201)
214 cd05560 Xcc1710_like Xcc1710_l 50.9 34 0.00073 26.2 4.6 40 229-268 40-84 (109)
215 cd08207 RLP_NonPhot Ribulose b 50.8 2.1E+02 0.0045 27.4 10.8 89 69-197 156-248 (406)
216 cd03319 L-Ala-DL-Glu_epimerase 50.7 1.9E+02 0.0041 26.0 14.3 98 159-267 177-283 (316)
217 PRK09195 gatY tagatose-bisphos 50.7 86 0.0019 28.4 7.9 79 171-251 156-235 (284)
218 PRK12857 fructose-1,6-bisphosp 50.0 94 0.002 28.1 8.0 78 171-251 156-235 (284)
219 TIGR01919 hisA-trpF 1-(5-phosp 49.3 1.6E+02 0.0035 25.8 9.3 74 184-261 42-118 (243)
220 PRK00748 1-(5-phosphoribosyl)- 48.9 1.7E+02 0.0037 24.9 9.6 73 187-262 44-119 (233)
221 COG0191 Fba Fructose/tagatose 48.7 43 0.00093 30.4 5.5 59 190-249 174-235 (286)
222 KOG0086 GTPase Rab4, small G p 48.5 70 0.0015 26.6 6.2 92 161-253 86-192 (214)
223 PRK05451 dihydroorotase; Provi 48.1 72 0.0016 29.5 7.2 64 204-269 117-197 (345)
224 PRK05286 dihydroorotate dehydr 47.9 2.3E+02 0.005 26.2 12.6 41 218-259 289-332 (344)
225 TIGR01435 glu_cys_lig_rel glut 47.8 21 0.00046 36.7 3.9 37 81-117 259-298 (737)
226 PRK05835 fructose-bisphosphate 47.6 96 0.0021 28.5 7.7 98 170-268 25-133 (307)
227 cd07937 DRE_TIM_PC_TC_5S Pyruv 47.4 2.1E+02 0.0045 25.5 14.5 91 173-268 91-197 (275)
228 PRK13587 1-(5-phosphoribosyl)- 47.4 1.7E+02 0.0036 25.5 9.0 72 188-262 47-121 (234)
229 PRK05301 pyrroloquinoline quin 47.1 2.1E+02 0.0046 26.5 10.3 96 169-268 45-159 (378)
230 COG0502 BioB Biotin synthase a 45.5 2E+02 0.0044 26.7 9.5 93 171-265 85-194 (335)
231 cd02930 DCR_FMN 2,4-dienoyl-Co 45.3 2.5E+02 0.0055 25.9 18.2 165 70-263 128-323 (353)
232 CHL00040 rbcL ribulose-1,5-bis 45.2 2.3E+02 0.005 27.7 10.2 109 70-224 181-294 (475)
233 COG1242 Predicted Fe-S oxidore 45.2 2.4E+02 0.0053 25.7 12.8 99 158-266 85-184 (312)
234 PF02811 PHP: PHP domain; Int 45.0 17 0.00036 29.2 2.2 26 10-38 1-31 (175)
235 KOG2367 Alpha-isopropylmalate 44.9 2.2E+02 0.0049 27.9 9.8 197 16-248 72-283 (560)
236 COG1856 Uncharacterized homolo 44.8 1.5E+02 0.0032 26.3 7.9 36 190-225 113-156 (275)
237 COG0191 Fba Fructose/tagatose 44.7 1E+02 0.0022 28.0 7.3 96 171-268 27-134 (286)
238 COG0329 DapA Dihydrodipicolina 44.7 1.2E+02 0.0026 27.5 8.0 88 157-244 7-102 (299)
239 cd01302 Cyclic_amidohydrolases 44.6 2.4E+02 0.0052 25.7 10.1 61 204-269 114-178 (337)
240 PRK09875 putative hydrolase; P 44.4 1.1E+02 0.0025 27.7 7.7 57 213-269 147-209 (292)
241 cd01658 Ribosomal_L30 Ribosoma 44.2 60 0.0013 21.6 4.4 42 220-261 2-46 (54)
242 COG2918 GshA Gamma-glutamylcys 44.0 30 0.00065 33.4 3.9 33 80-112 314-347 (518)
243 cd02801 DUS_like_FMN Dihydrour 43.6 2E+02 0.0044 24.3 11.8 54 208-262 172-229 (231)
244 TIGR01290 nifB nitrogenase cof 43.3 1.4E+02 0.0031 28.7 8.6 76 168-245 58-137 (442)
245 TIGR03700 mena_SCO4494 putativ 43.1 1.8E+02 0.0038 27.0 9.0 77 170-249 79-169 (351)
246 PTZ00413 lipoate synthase; Pro 43.0 2E+02 0.0044 27.3 9.2 88 171-260 178-271 (398)
247 PRK14466 ribosomal RNA large s 42.9 1.9E+02 0.0042 26.9 9.1 66 159-224 250-320 (345)
248 TIGR00857 pyrC_multi dihydroor 42.7 2.9E+02 0.0064 25.9 12.6 66 157-227 102-169 (411)
249 PRK05611 rpmD 50S ribosomal pr 42.6 54 0.0012 22.3 4.1 43 219-261 4-49 (59)
250 PF02126 PTE: Phosphotriestera 42.3 80 0.0017 28.9 6.4 53 216-268 153-212 (308)
251 PRK05660 HemN family oxidoredu 42.3 86 0.0019 29.4 6.8 70 190-259 59-136 (378)
252 PTZ00314 inosine-5'-monophosph 42.0 2.8E+02 0.0061 27.1 10.5 80 160-245 228-307 (495)
253 PF00388 PI-PLC-X: Phosphatidy 42.0 47 0.001 26.4 4.4 17 82-98 32-48 (146)
254 TIGR00970 leuA_yeast 2-isoprop 41.6 3.7E+02 0.0081 26.8 13.7 122 104-249 135-269 (564)
255 PF01116 F_bP_aldolase: Fructo 41.5 42 0.0009 30.4 4.4 96 170-268 25-132 (287)
256 cd00946 FBP_aldolase_IIA Class 41.1 1.4E+02 0.0031 27.8 7.9 44 218-261 245-292 (345)
257 PRK06552 keto-hydroxyglutarate 40.5 2.4E+02 0.0052 24.3 12.0 95 163-266 15-112 (213)
258 TIGR00683 nanA N-acetylneurami 40.4 2.3E+02 0.0049 25.4 9.1 73 171-243 19-98 (290)
259 cd00355 Ribosomal_L30_like Rib 40.2 72 0.0016 21.0 4.3 39 225-263 6-47 (53)
260 TIGR02313 HpaI-NOT-DapA 2,4-di 40.0 1.7E+02 0.0036 26.4 8.1 76 170-245 18-99 (294)
261 TIGR01182 eda Entner-Doudoroff 39.9 2.4E+02 0.0052 24.2 11.4 23 76-98 20-42 (204)
262 TIGR00423 radical SAM domain p 39.7 2.7E+02 0.0059 25.1 9.6 77 170-249 36-126 (309)
263 PRK01060 endonuclease IV; Prov 39.7 2.6E+02 0.0056 24.4 11.1 43 78-121 14-57 (281)
264 TIGR01520 FruBisAldo_II_A fruc 39.6 1.7E+02 0.0038 27.4 8.2 92 170-261 195-304 (357)
265 TIGR02129 hisA_euk phosphoribo 39.4 1.7E+02 0.0037 26.1 7.8 67 187-262 52-124 (253)
266 cd08209 RLP_DK-MTP-1-P-enolase 39.0 3.5E+02 0.0076 25.7 10.3 89 69-197 137-229 (391)
267 cd00248 Mth938-like Mth938-lik 38.7 31 0.00066 26.4 2.7 39 230-268 40-84 (109)
268 TIGR01308 rpmD_bact ribosomal 38.3 84 0.0018 21.0 4.4 43 219-261 1-46 (55)
269 TIGR02493 PFLA pyruvate format 38.3 78 0.0017 27.0 5.5 56 170-225 46-101 (235)
270 PF00327 Ribosomal_L30: Riboso 38.3 51 0.0011 21.5 3.4 41 220-260 3-46 (52)
271 smart00481 POLIIIAc DNA polyme 38.2 32 0.00069 23.4 2.5 26 11-39 1-31 (67)
272 PF00977 His_biosynth: Histidi 38.1 60 0.0013 28.1 4.7 77 184-262 40-118 (229)
273 cd00137 PI-PLCc Catalytic doma 37.8 2.6E+02 0.0057 24.9 9.0 18 81-98 39-56 (274)
274 cd01297 D-aminoacylase D-amino 37.7 3.5E+02 0.0076 25.4 15.1 51 174-224 229-280 (415)
275 PRK14453 chloramphenicol/florf 37.6 3.2E+02 0.007 25.4 9.7 69 156-224 247-325 (347)
276 PRK12928 lipoyl synthase; Prov 37.4 3.1E+02 0.0068 24.7 10.8 61 157-220 205-273 (290)
277 PRK12928 lipoyl synthase; Prov 36.9 3.2E+02 0.0069 24.7 9.9 92 169-261 86-183 (290)
278 TIGR00735 hisF imidazoleglycer 36.8 2.9E+02 0.0063 24.1 9.0 81 178-261 35-118 (254)
279 TIGR03326 rubisco_III ribulose 36.8 3.1E+02 0.0068 26.2 9.6 88 70-197 158-249 (412)
280 TIGR02826 RNR_activ_nrdG3 anae 36.6 1.7E+02 0.0037 23.6 6.9 51 170-226 46-96 (147)
281 PRK08599 coproporphyrinogen II 36.5 2.4E+02 0.0053 26.1 8.9 72 189-261 51-131 (377)
282 COG3142 CutC Uncharacterized p 36.4 1.8E+02 0.0039 25.7 7.2 35 217-251 114-152 (241)
283 cd00952 CHBPH_aldolase Trans-o 36.2 2.4E+02 0.0053 25.5 8.6 73 170-245 26-107 (309)
284 TIGR02026 BchE magnesium-proto 36.2 2.6E+02 0.0055 27.3 9.3 91 167-259 219-316 (497)
285 PF01979 Amidohydro_1: Amidohy 36.2 30 0.00065 30.8 2.6 65 204-268 143-232 (333)
286 COG0613 Predicted metal-depend 35.6 27 0.00059 31.0 2.2 28 9-39 3-33 (258)
287 PF04430 DUF498: Protein of un 35.5 33 0.00071 26.2 2.4 39 230-268 40-85 (110)
288 PRK13210 putative L-xylulose 5 35.4 3E+02 0.0065 23.9 13.2 22 78-99 18-39 (284)
289 TIGR01108 oadA oxaloacetate de 35.4 4.7E+02 0.01 26.2 16.1 93 171-268 89-197 (582)
290 TIGR01210 conserved hypothetic 35.4 3.5E+02 0.0075 24.6 9.6 89 168-257 44-145 (313)
291 cd02810 DHOD_DHPD_FMN Dihydroo 35.2 3.2E+02 0.0069 24.1 13.1 43 218-261 243-288 (289)
292 PRK09357 pyrC dihydroorotase; 35.1 76 0.0016 29.9 5.3 39 189-228 144-182 (423)
293 cd04732 HisA HisA. Phosphorib 35.0 2.8E+02 0.0061 23.5 8.8 72 188-262 44-118 (234)
294 COG1879 RbsB ABC-type sugar tr 34.8 2.7E+02 0.0058 24.8 8.7 53 169-228 74-126 (322)
295 TIGR01036 pyrD_sub2 dihydrooro 34.4 3.7E+02 0.0081 24.7 12.1 88 173-261 224-333 (335)
296 PRK07114 keto-hydroxyglutarate 34.4 3.1E+02 0.0068 23.8 11.7 95 163-266 17-115 (222)
297 cd02932 OYE_YqiM_FMN Old yello 34.2 3.7E+02 0.0079 24.6 18.0 163 70-261 145-335 (336)
298 COG0646 MetH Methionine syntha 34.2 3.7E+02 0.0081 24.7 13.8 29 71-99 138-168 (311)
299 PF05913 DUF871: Bacterial pro 34.1 92 0.002 29.2 5.5 97 171-269 12-117 (357)
300 PRK13399 fructose-1,6-bisphosp 33.9 2.3E+02 0.005 26.5 8.0 96 170-267 26-140 (347)
301 TIGR01521 FruBisAldo_II_B fruc 33.7 2.4E+02 0.0051 26.4 8.1 96 170-267 24-138 (347)
302 TIGR03332 salvage_mtnW 2,3-dik 33.5 3.9E+02 0.0084 25.6 9.7 88 70-197 153-244 (407)
303 PF04055 Radical_SAM: Radical 33.4 1E+02 0.0022 23.7 5.1 82 170-254 28-114 (166)
304 PRK13985 ureB urease subunit b 33.4 1.6E+02 0.0034 29.5 7.2 76 188-264 212-294 (568)
305 cd00408 DHDPS-like Dihydrodipi 33.3 2.5E+02 0.0055 24.7 8.1 74 170-246 15-97 (281)
306 PRK10605 N-ethylmaleimide redu 33.1 4.1E+02 0.0088 24.8 16.5 161 70-262 150-337 (362)
307 cd00950 DHDPS Dihydrodipicolin 32.9 2.4E+02 0.0051 25.0 7.9 74 169-245 17-99 (284)
308 TIGR03572 WbuZ glycosyl amidat 32.9 3.1E+02 0.0068 23.4 8.9 75 184-261 41-118 (232)
309 PRK06843 inosine 5-monophospha 32.7 3.3E+02 0.0072 26.0 9.1 70 175-249 154-223 (404)
310 TIGR02033 D-hydantoinase D-hyd 32.7 2.2E+02 0.0047 26.9 8.0 26 202-228 160-185 (454)
311 PRK07084 fructose-bisphosphate 32.7 2E+02 0.0044 26.6 7.4 95 171-267 33-143 (321)
312 cd05125 Mth938_2P1-like Mth938 32.5 44 0.00095 25.9 2.7 24 245-268 60-86 (114)
313 PRK07998 gatY putative fructos 32.4 1.1E+02 0.0024 27.7 5.6 76 171-251 154-232 (283)
314 PF03932 CutC: CutC family; I 32.3 3.2E+02 0.007 23.4 12.9 28 218-245 114-144 (201)
315 TIGR00674 dapA dihydrodipicoli 32.2 2.7E+02 0.0058 24.8 8.2 65 170-234 16-83 (285)
316 TIGR00542 hxl6Piso_put hexulos 32.1 3.5E+02 0.0075 23.7 12.5 21 79-99 19-39 (279)
317 PRK11572 copper homeostasis pr 32.0 2.4E+02 0.0051 25.1 7.5 43 205-249 104-150 (248)
318 PF09846 DUF2073: Uncharacteri 32.0 1.4E+02 0.003 22.9 5.1 51 163-213 22-74 (104)
319 PRK07360 FO synthase subunit 2 31.8 3.4E+02 0.0075 25.3 9.0 75 170-249 91-180 (371)
320 TIGR02668 moaA_archaeal probab 31.7 2.6E+02 0.0056 24.9 8.0 75 169-250 39-117 (302)
321 PRK12331 oxaloacetate decarbox 31.6 4.9E+02 0.011 25.2 12.6 95 169-268 92-202 (448)
322 PRK07135 dnaE DNA polymerase I 31.4 38 0.00082 36.1 2.7 25 7-31 1-30 (973)
323 TIGR02109 PQQ_syn_pqqE coenzym 31.3 4.1E+02 0.0089 24.3 9.7 96 169-268 36-150 (358)
324 cd02071 MM_CoA_mut_B12_BD meth 31.2 2.4E+02 0.0052 21.6 8.3 80 177-260 41-121 (122)
325 PRK05835 fructose-bisphosphate 31.1 1.4E+02 0.0029 27.5 6.0 79 171-251 156-258 (307)
326 TIGR00167 cbbA ketose-bisphosp 31.0 1.6E+02 0.0034 26.7 6.4 42 210-251 197-239 (288)
327 TIGR02491 NrdG anaerobic ribon 30.9 1.6E+02 0.0034 23.7 5.9 56 170-227 46-105 (154)
328 TIGR02494 PFLE_PFLC glycyl-rad 30.9 1.1E+02 0.0025 27.1 5.5 56 169-224 105-160 (295)
329 COG1180 PflA Pyruvate-formate 30.9 93 0.002 27.6 4.8 80 189-269 83-178 (260)
330 cd01317 DHOase_IIa Dihydroorot 30.7 4.3E+02 0.0094 24.3 10.0 38 188-227 104-141 (374)
331 PRK11613 folP dihydropteroate 30.5 4.1E+02 0.0089 24.0 9.4 88 177-268 39-138 (282)
332 TIGR00126 deoC deoxyribose-pho 30.2 3.6E+02 0.0077 23.2 13.1 87 157-247 117-203 (211)
333 PRK04147 N-acetylneuraminate l 30.2 2.9E+02 0.0063 24.7 8.1 89 157-245 6-103 (293)
334 PRK10425 DNase TatD; Provision 30.0 3.9E+02 0.0084 23.6 15.1 77 188-266 84-171 (258)
335 cd03325 D-galactonate_dehydrat 30.0 4.4E+02 0.0096 24.2 12.6 70 159-239 176-247 (352)
336 PRK14456 ribosomal RNA large s 29.9 4.7E+02 0.01 24.5 9.8 68 157-224 278-348 (368)
337 PRK13361 molybdenum cofactor b 29.8 2.8E+02 0.0061 25.2 8.0 127 19-186 44-183 (329)
338 PRK13523 NADPH dehydrogenase N 29.3 4.6E+02 0.0099 24.2 16.7 161 70-261 133-320 (337)
339 PRK08323 phenylhydantoinase; V 29.3 2.2E+02 0.0047 27.0 7.4 26 202-228 157-182 (459)
340 cd04743 NPD_PKS 2-Nitropropane 29.1 4E+02 0.0087 24.6 8.7 47 211-260 96-155 (320)
341 cd08213 RuBisCO_large_III Ribu 28.9 4.5E+02 0.0098 25.2 9.3 89 69-197 144-236 (412)
342 PF03102 NeuB: NeuB family; I 28.8 1.4E+02 0.003 26.4 5.5 63 203-268 54-118 (241)
343 PF01116 F_bP_aldolase: Fructo 28.7 1.3E+02 0.0028 27.2 5.4 79 171-251 156-238 (287)
344 PRK09197 fructose-bisphosphate 28.5 1.8E+02 0.0038 27.3 6.3 44 218-261 249-296 (350)
345 PRK11145 pflA pyruvate formate 28.5 1.1E+02 0.0023 26.5 4.8 58 170-227 51-109 (246)
346 PRK09196 fructose-1,6-bisphosp 28.2 3.1E+02 0.0068 25.6 7.9 96 170-267 26-140 (347)
347 PRK07259 dihydroorotate dehydr 27.9 4.4E+02 0.0095 23.5 14.7 52 207-259 222-276 (301)
348 PRK13206 ureC urease subunit a 27.4 1.9E+02 0.0041 29.0 6.7 76 188-264 218-300 (573)
349 cd00946 FBP_aldolase_IIA Class 27.3 5.2E+02 0.011 24.2 9.4 99 170-268 24-159 (345)
350 PRK07455 keto-hydroxyglutarate 27.1 3.7E+02 0.008 22.4 9.4 94 163-265 14-107 (187)
351 cd08206 RuBisCO_large_I_II_III 27.0 5.1E+02 0.011 24.8 9.3 89 69-197 145-238 (414)
352 PRK06801 hypothetical protein; 26.9 1.9E+02 0.0041 26.2 6.1 46 205-251 190-236 (286)
353 PRK13308 ureC urease subunit a 26.8 2.5E+02 0.0053 28.2 7.3 73 188-264 212-294 (569)
354 cd08208 RLP_Photo Ribulose bis 26.8 5.8E+02 0.013 24.6 10.8 88 70-197 174-265 (424)
355 cd02940 DHPD_FMN Dihydropyrimi 26.2 4.8E+02 0.01 23.4 15.8 43 218-261 252-297 (299)
356 PRK07084 fructose-bisphosphate 26.2 3.6E+02 0.0079 24.9 7.9 79 171-251 165-271 (321)
357 PRK03669 mannosyl-3-phosphogly 26.1 1.4E+02 0.0029 26.3 5.1 52 185-238 4-58 (271)
358 cd00947 TBP_aldolase_IIB Tagat 26.1 4.9E+02 0.011 23.4 14.2 79 171-251 149-229 (276)
359 TIGR00539 hemN_rel putative ox 26.1 5.2E+02 0.011 23.8 9.5 70 190-259 52-129 (360)
360 TIGR00288 conserved hypothetic 26.0 3.3E+02 0.0071 22.5 6.9 62 169-238 88-149 (160)
361 PRK03170 dihydrodipicolinate s 25.8 3.9E+02 0.0084 23.8 8.1 75 170-244 19-99 (292)
362 TIGR03249 KdgD 5-dehydro-4-deo 25.0 5E+02 0.011 23.2 9.6 89 156-245 7-103 (296)
363 TIGR03234 OH-pyruv-isom hydrox 24.9 4.4E+02 0.0096 22.5 15.3 20 78-97 16-35 (254)
364 TIGR00007 phosphoribosylformim 24.9 4.3E+02 0.0093 22.4 8.7 68 188-258 43-113 (230)
365 PRK14114 1-(5-phosphoribosyl)- 24.7 4.8E+02 0.01 22.8 9.5 73 186-261 43-117 (241)
366 PRK08207 coproporphyrinogen II 24.6 2.6E+02 0.0057 27.3 7.1 71 189-259 218-298 (488)
367 PRK09382 ispDF bifunctional 2- 24.1 80 0.0017 29.8 3.3 45 208-252 174-227 (378)
368 cd08210 RLP_RrRLP Ribulose bis 24.1 6E+02 0.013 23.8 11.5 77 70-186 139-218 (364)
369 PRK08444 hypothetical protein; 24.1 5.9E+02 0.013 23.7 10.0 76 170-248 80-168 (353)
370 TIGR01792 urease_alph urease, 24.0 2.3E+02 0.005 28.3 6.6 74 189-264 212-293 (567)
371 cd01538 PBP1_ABC_xylose_bindin 24.0 4.7E+02 0.01 22.6 8.2 62 156-227 28-89 (288)
372 COG1038 PycA Pyruvate carboxyl 24.0 8.8E+02 0.019 25.8 10.6 73 175-250 693-771 (1149)
373 cd08212 RuBisCO_large_I Ribulo 23.8 6.8E+02 0.015 24.3 10.2 108 70-224 159-271 (450)
374 cd07945 DRE_TIM_CMS Leptospira 23.6 3E+02 0.0065 24.7 6.8 64 205-268 115-196 (280)
375 TIGR02666 moaA molybdenum cofa 23.6 3.7E+02 0.0081 24.3 7.6 77 169-250 42-121 (334)
376 KOG4013 Predicted Cu2+ homeost 23.6 3.7E+02 0.0081 23.2 6.8 83 163-249 62-159 (255)
377 PRK07455 keto-hydroxyglutarate 23.3 4.4E+02 0.0096 22.0 13.2 35 209-246 96-130 (187)
378 TIGR00735 hisF imidazoleglycer 23.2 4E+02 0.0086 23.3 7.4 57 209-266 189-253 (254)
379 PRK13361 molybdenum cofactor b 23.2 5.3E+02 0.012 23.4 8.6 77 170-251 45-124 (329)
380 TIGR03569 NeuB_NnaB N-acetylne 23.2 3.3E+02 0.0071 25.2 7.1 64 202-268 73-138 (329)
381 COG1841 RpmD Ribosomal protein 23.0 2E+02 0.0044 19.3 4.2 35 226-260 8-45 (55)
382 PLN02858 fructose-bisphosphate 22.8 2.8E+02 0.0062 30.9 7.6 96 171-268 1123-1228(1378)
383 PF04055 Radical_SAM: Radical 22.5 2.5E+02 0.0055 21.4 5.6 64 176-239 90-164 (166)
384 PLN02417 dihydrodipicolinate s 22.4 5.5E+02 0.012 22.8 9.2 71 170-243 19-98 (280)
385 PF13918 PLDc_3: PLD-like doma 22.2 1.2E+02 0.0027 25.4 3.7 22 153-174 129-150 (177)
386 PRK04208 rbcL ribulose bisopho 22.1 7.4E+02 0.016 24.2 10.0 89 69-197 173-266 (468)
387 TIGR02146 LysS_fung_arch homoc 22.0 5.9E+02 0.013 22.9 14.6 132 81-246 74-213 (344)
388 PF00016 RuBisCO_large: Ribulo 22.0 4E+02 0.0086 24.5 7.3 110 70-225 28-142 (309)
389 PRK08898 coproporphyrinogen II 21.9 3.3E+02 0.0071 25.6 7.0 29 231-259 122-151 (394)
390 PRK05718 keto-hydroxyglutarate 21.8 2.8E+02 0.0061 23.9 6.0 68 175-245 53-132 (212)
391 COG0279 GmhA Phosphoheptose is 21.7 4.9E+02 0.011 21.9 14.4 121 71-231 24-149 (176)
392 COG2089 SpsE Sialic acid synth 21.3 2.9E+02 0.0063 25.7 6.2 61 203-266 88-150 (347)
393 COG3360 Uncharacterized conser 21.2 1.4E+02 0.003 21.1 3.1 28 69-96 14-43 (71)
394 PF10901 DUF2690: Protein of u 21.2 61 0.0013 24.7 1.6 14 88-101 28-41 (103)
395 cd06300 PBP1_ABC_sugar_binding 21.2 5.1E+02 0.011 21.9 9.0 60 157-224 32-91 (272)
396 cd00953 KDG_aldolase KDG (2-ke 21.1 5.9E+02 0.013 22.6 8.4 73 171-243 18-93 (279)
397 cd01311 PDC_hydrolase 2-pyrone 21.1 5E+02 0.011 22.5 7.7 80 188-269 92-185 (263)
398 PRK07328 histidinol-phosphatas 21.1 97 0.0021 27.4 3.1 28 8-38 2-33 (269)
399 PRK14041 oxaloacetate decarbox 21.0 7.8E+02 0.017 24.0 15.6 94 170-268 92-201 (467)
400 PRK05848 nicotinate-nucleotide 21.0 6.1E+02 0.013 22.7 15.1 154 52-250 81-259 (273)
401 PRK14460 ribosomal RNA large s 20.9 6.8E+02 0.015 23.3 10.0 64 157-224 257-327 (354)
402 PRK14459 ribosomal RNA large s 20.9 7.1E+02 0.015 23.5 9.6 67 157-224 281-354 (373)
403 TIGR00288 conserved hypothetic 20.8 3.6E+02 0.0079 22.2 6.2 57 211-268 72-134 (160)
404 COG1902 NemA NADH:flavin oxido 20.8 7E+02 0.015 23.4 14.9 166 70-263 140-335 (363)
405 cd00954 NAL N-Acetylneuraminic 20.7 5.9E+02 0.013 22.6 8.2 74 170-245 18-100 (288)
406 COG2100 Predicted Fe-S oxidore 20.6 4.7E+02 0.01 24.6 7.3 82 171-255 142-229 (414)
407 cd00453 FTBP_aldolase_II Fruct 20.5 4.8E+02 0.01 24.4 7.5 44 218-261 242-289 (340)
408 PRK06552 keto-hydroxyglutarate 20.4 5.5E+02 0.012 22.0 9.6 56 188-246 67-134 (213)
409 TIGR01212 radical SAM protein, 20.3 6.4E+02 0.014 22.7 10.1 57 170-229 91-147 (302)
410 PRK09058 coproporphyrinogen II 20.2 3.5E+02 0.0075 26.0 6.9 29 231-259 163-192 (449)
No 1
>PTZ00124 adenosine deaminase; Provisional
Probab=100.00 E-value=2.4e-55 Score=406.06 Aligned_cols=235 Identities=22% Similarity=0.303 Sum_probs=208.3
Q ss_pred hhhhcCCcchhccccCCCCCHHHHHHHHHHhccCCCccchhhHHHH-----hhcCCCHHHHHHHhHHHHHhhCCHHHHHH
Q 024296 2 EWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVI-----MKSDRSLHEVFKLFDLIHVLTTDHATVTR 76 (269)
Q Consensus 2 ~~i~~lPK~eLH~HL~Gs~~~~tl~~la~~~~~~g~~~~~~~~~~~-----~~~~~~l~~f~~~f~~~~~l~~~~~~~~~ 76 (269)
+|+++|||+|||+||+||++|+|+++||++ +|+.++.+.+++. ...+.+|.+||+.|..+..++++++++++
T Consensus 30 ~~~~~lPKvELH~HLdGsi~~~tl~~La~~---~~~~~~~~~~~l~~~~~~~~~~~~L~~fl~~f~~~~~vl~t~~dl~r 106 (362)
T PTZ00124 30 KIWKRIPKCELHCHLDLCFSVDFFLSCIRK---YNLQPNLSDEEILDYYLFAKGGKSLGEFVEKAIRVADIFNDYEVIED 106 (362)
T ss_pred HHHhcCCceeEeecccCCCCHHHHHHHHHH---cCCCCCCCHHHHHHHHhcccCCCCHHHHHHHHHHHHHHhCCHHHHHH
Confidence 689999999999999999999999999985 6665544433332 13467999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCCCCc-ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 024296 77 ITQEVVEDFASENIVYLELRTTPKRN-ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (269)
Q Consensus 77 ~~~~~~~~~~~dnV~Y~Elr~~p~~~-~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (269)
+++++++++++|||+|+|+||+|..+ ..+|++.+++++++++|++++++ ..+
T Consensus 107 ~a~e~~~d~~~dgV~Y~Eir~~P~~~~~~~gl~~~~vv~av~~g~~~a~~---------------------------~~~ 159 (362)
T PTZ00124 107 LAKHAVFNKYKEGVVLMEFRYSPTFVAFKHNLDIDLIHQAIVKGIKEAVE---------------------------LLD 159 (362)
T ss_pred HHHHHHHHHHHcCCEEEEEEcCchhhhcCCCCCHHHHHHHHHHHHHHHHh---------------------------ccC
Confidence 99999999999999999999999764 46789999999999999998743 225
Q ss_pred CCceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCCh---h
Q 024296 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNK---E 232 (269)
Q Consensus 156 ~~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~---e 232 (269)
+||.+|+|+|++|+.+++.+.+++++|.++++. ||||||+|+|.. +..|.++|++||+.|+++|+||||..++ +
T Consensus 160 ~gI~~~lI~~~~R~~~~e~a~e~~~~a~~~~~~-vvGiDLaG~E~~--~~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~ 236 (362)
T PTZ00124 160 HKIEVGLLCIGDTGHDAAPIKESADFCLKHKAD-FVGFDHAGHEVD--LKPFKDIFDYVREAGVNLTVHAGEDVTLPNLN 236 (362)
T ss_pred CCceEeEEEEecCCCCHHHHHHHHHHHHhccCC-eEEEeccCCCCC--cHHHHHHHHHHHHCCCCEEEEeCCCCCCCcch
Confidence 799999999999999999999999999998775 999999999985 3679999999999999999999998543 4
Q ss_pred HHHHHHh-cCCCcccccccC--CHHHHHHHHhCCCceeeC
Q 024296 233 EIQSMLD-FLPQRIGHACCF--EEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 233 ~i~~ai~-l~a~RIGHG~~~--~~~l~~~l~~~~I~lEic 269 (269)
++++|+. +|++|||||+++ +|++++++++++|+||||
T Consensus 237 ~v~~ai~~l~~~RIGHG~~~~~d~~l~~~l~~~~I~lEvC 276 (362)
T PTZ00124 237 TLYSAIQVLKVKRIGHGIRVAESQELIDMVKEKDILLEVC 276 (362)
T ss_pred hHHHHHHHhCCCccccccccCCCHHHHHHHHHcCCeEEEC
Confidence 6787886 899999999987 699999999999999999
No 2
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=100.00 E-value=7.8e-53 Score=388.10 Aligned_cols=218 Identities=20% Similarity=0.295 Sum_probs=198.8
Q ss_pred ChhhhcCCc-chhccccCCCCCHHHHHHHHHHhccCCCccchhhHHHHhhcCCCHHHHHHHhHHHHHhhCCHHHHHHHHH
Q 024296 1 MEWFASMPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQ 79 (269)
Q Consensus 1 ~~~i~~lPK-~eLH~HL~Gs~~~~tl~~la~~~~~~g~~~~~~~~~~~~~~~~~l~~f~~~f~~~~~l~~~~~~~~~~~~ 79 (269)
++|+++||| +|||+||+||++++|+++||++ +|++.|..+..+++++++++++++
T Consensus 18 ~~~~~~lPK~~eLH~Hl~Gsi~~~tl~~la~~------------------------~fl~~f~~~~~~l~~~~~~~~~~~ 73 (345)
T cd01321 18 FKIIQKMPKGALLHVHDTAMVSSDWLIKNATY------------------------RFEQIFDIIDGLLTYLPIFRDYYR 73 (345)
T ss_pred HHHHHhCCChHhhccCccccCCHHHHHHHHHH------------------------HHHHHHHHHHHHhcCHHHHHHHHH
Confidence 368999999 7999999999999999999972 699999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEecCCCC---cccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCC
Q 024296 80 EVVEDFASENIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (269)
Q Consensus 80 ~~~~~~~~dnV~Y~Elr~~p~~---~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (269)
++++++++|||+|+|+||+|.. ++.+|++.+++++++.++++.+.+ ..+.
T Consensus 74 ~~~~d~~~dgV~Y~Eir~~P~~~~~~~~~g~~~~~v~~av~~~~~~~~~--------------------------~~~~- 126 (345)
T cd01321 74 RLLEELYEDNVQYVELRSSFSPLYDLDGREYDYEETVQLLEEVVEKFKK--------------------------THPD- 126 (345)
T ss_pred HHHHHHHHcCCEEEEEeecchHHHHccCCCCCHHHHHHHHHHHHHHHHH--------------------------hCCC-
Confidence 9999999999999999999964 345789999999999999988754 1223
Q ss_pred CceEEEEEEEeCCCCHHHHHHHHHHHHhhC---CCceEEEecCCCCC-CCChhhHHHHHHHHHHcC--CceeeecCCCCC
Q 024296 157 KIYVRLLLSIDRRETTEAAMETVKLALEMR---DLGVVGIDLSGNPT-KGEWTTFLPALKFAREQG--LQITLHCGEIPN 230 (269)
Q Consensus 157 ~i~~rli~~~~R~~~~~~~~~~~~~a~~~~---~~~vvGidl~G~E~-~~~~~~f~~~f~~ar~~g--l~~t~HAGE~~~ 230 (269)
++.+|+|+|++|+.+++.+.+++++|.+++ ++.||||||+|+|. +.++..|.++|++||+.| +++|+||||.++
T Consensus 127 ~i~v~lI~~~~R~~~~e~~~e~~~~a~~~~~~~~~~VvGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~ 206 (345)
T cd01321 127 FIGLKIIYATLRNFNDSEIKESMEQCLNLKKKFPDFIAGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNG 206 (345)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHHHHHHhCCCeEEEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcC
Confidence 799999999999999999999999999873 44699999999995 678899999999999999 999999999974
Q ss_pred -----hhHHHHHHhcCCCcccccccC--CHHHHHHHHhCCCceeeC
Q 024296 231 -----KEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 231 -----~e~i~~ai~l~a~RIGHG~~~--~~~l~~~l~~~~I~lEic 269 (269)
+++|++||.+|++|||||+++ +|+++++|++++|+||||
T Consensus 207 ~~~~~~~~v~~al~lg~~RIGHG~~~~~dp~ll~~l~~~~I~lEvC 252 (345)
T cd01321 207 DGTETDENLVDALLLNTKRIGHGFALPKHPLLMDLVKKKNIAIEVC 252 (345)
T ss_pred CCCCChhHHHHHHHhCCCcCccccccCcCHHHHHHHHHcCCeEEEC
Confidence 579999999999999999987 599999999999999999
No 3
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.6e-50 Score=367.69 Aligned_cols=237 Identities=32% Similarity=0.471 Sum_probs=212.3
Q ss_pred ChhhhcC-CcchhccccCCCCCHHHHHHHHHHhccCCCccc-----hhhHHHHhhc--CCCHHHHHH-HhHHHHHhhCCH
Q 024296 1 MEWFASM-PKVELHAHLNGSIRDSTLLELARVLGEKGVIVF-----SDVEHVIMKS--DRSLHEVFK-LFDLIHVLTTDH 71 (269)
Q Consensus 1 ~~~i~~l-PK~eLH~HL~Gs~~~~tl~~la~~~~~~g~~~~-----~~~~~~~~~~--~~~l~~f~~-~f~~~~~l~~~~ 71 (269)
++||+.| ||+|||+||+||++++++++|+.+ +|.+.+ .+++..+.+. ...+.+|++ .|..+..++.++
T Consensus 40 ~~~l~~l~pk~eLHaHl~Gsls~~~l~~L~~r---~~~~~p~~~~~~~~~~~l~~~~~~~~l~~f~~~~f~~l~~ll~~~ 116 (399)
T KOG1097|consen 40 FNFLQKLPPKVELHAHLTGSLSPDLLLDLTYR---FGIPLPKARTAEELEKVLERYKPLYPLADFLDNIFYLLHGLLIYA 116 (399)
T ss_pred HHHHHhCCCCeEEEeeccccccHHHHHHHHHh---cCCCCcccccHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhH
Confidence 3689999 889999999999999999999995 565544 3455554432 235999999 889999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEe-cCCCCcccCC-CCHHHHHHHHHHHHHhhhhcccccccccccccccccccccccc
Q 024296 72 ATVTRITQEVVEDFASENIVYLELR-TTPKRNESIG-MSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDA 149 (269)
Q Consensus 72 ~~~~~~~~~~~~~~~~dnV~Y~Elr-~~p~~~~~~g-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (269)
+++++++|++++++++|||+|+|+| +.|+.++.+| +|+++++..+.+++++++
T Consensus 117 ~~~~~~~y~~~eef~~dgVvY~E~Rt~~p~l~~~~G~~t~e~~v~~~~~~~e~~~------------------------- 171 (399)
T KOG1097|consen 117 PAFRDYAYEALEEFAEDGVVYLEVRTYPPQLYTADGDITPEDVVAIVIAALEKAK------------------------- 171 (399)
T ss_pred HHHHHHHHHHHHHHHHcCceEEEEEccCchhhhcCCCCCHHHHHHHHHHHHHHHH-------------------------
Confidence 9999999999999999999999999 7788888888 999999999999999875
Q ss_pred ccCCCCCCceEEEEEEEeCCCCHHHHHHHHHHHHh---hCCCceEEEecCCCC-CCCChhhHHHHHHHHHHcCCceeeec
Q 024296 150 CNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALE---MRDLGVVGIDLSGNP-TKGEWTTFLPALKFAREQGLQITLHC 225 (269)
Q Consensus 150 ~~~~~~~~i~~rli~~~~R~~~~~~~~~~~~~a~~---~~~~~vvGidl~G~E-~~~~~~~f~~~f~~ar~~gl~~t~HA 225 (269)
.++||++|+|+|++|+.+++.+.+++..+.+ ..+..||||||+|+| .++|+.+|.+++.++++.|+++|+||
T Consensus 172 ----~~fpI~sklI~~~~R~~~~e~~~e~v~~~~~~~~~~~~~VvGidL~G~e~~~~p~~~f~~vl~~~~~~gi~~t~Ha 247 (399)
T KOG1097|consen 172 ----RDFPIKSKLIMCCIRHMPPEVAEETVSEAKELNKLFPNFVVGIDLVGQEDLGGPLSLFLEVLAKAPAKGIHLTFHA 247 (399)
T ss_pred ----HhCCCcceEEEeeccCCChHHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCCCChhhhHHHHHhhhhcCCcEEEEc
Confidence 4678999999999999999999999998887 246789999999999 57889999999999999999999999
Q ss_pred CCC-CChhHHHHHHh-cCCCcccccccC--CHHHHHHHHhCCCceeeC
Q 024296 226 GEI-PNKEEIQSMLD-FLPQRIGHACCF--EEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 226 GE~-~~~e~i~~ai~-l~a~RIGHG~~~--~~~l~~~l~~~~I~lEic 269 (269)
||+ ++++.++++++ +|++|||||+++ +|.+++++++++|+||||
T Consensus 248 GE~~~~~~~v~~~LD~l~~~RIGHG~~l~~dp~L~~~~k~~nI~lEiC 295 (399)
T KOG1097|consen 248 GETNGGASVVKNALDLLGTERIGHGYFLTKDPELINLLKSRNIALEIC 295 (399)
T ss_pred cccCCChHHHHHHHHhhCCccccCceeccCCHHHHHHHHhcCceEEEc
Confidence 999 58899999999 899999999987 789999999999999999
No 4
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=100.00 E-value=7.7e-50 Score=366.42 Aligned_cols=231 Identities=39% Similarity=0.604 Sum_probs=201.1
Q ss_pred CCcchhccccCCCCCHHHHHHHHHHhccCCCc-cch----hhH-HHH-hhcCCCHHHHHHHhHHHHHhhC---CHHHHHH
Q 024296 7 MPKVELHAHLNGSIRDSTLLELARVLGEKGVI-VFS----DVE-HVI-MKSDRSLHEVFKLFDLIHVLTT---DHATVTR 76 (269)
Q Consensus 7 lPK~eLH~HL~Gs~~~~tl~~la~~~~~~g~~-~~~----~~~-~~~-~~~~~~l~~f~~~f~~~~~l~~---~~~~~~~ 76 (269)
+||+|||+||+||++++|+++++++ ++.. ++. ... ... .....+|.+|+..|.....+++ +++++++
T Consensus 2 ~pK~eLH~HL~Gsi~~~~l~ela~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~ 78 (331)
T PF00962_consen 2 LPKAELHIHLDGSISPETLLELAKK---NNICELPADTDEELEKHLTRPENFRSLNEFLELFDIISSVLQADRTPEDLRR 78 (331)
T ss_dssp S-EEEEEEEGGGSS-HHHHHHHHHH---CTCC-TTSCSSHHHHHHHHCTSSCSSHHHHHHHHHHHHHHHTCSTSHHHHHH
T ss_pred CCEEEeeeCCccCCCHHHHHHHHHh---CCCCccccccchhhhhHHhhhhhcccHHHHHHHHHHhhhhhhhcccHHHHHH
Confidence 7999999999999999999999996 4433 111 111 121 3457899999999999999999 9999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCCCCcccCC--CCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCC
Q 024296 77 ITQEVVEDFASENIVYLELRTTPKRNESIG--MSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTR 154 (269)
Q Consensus 77 ~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (269)
+++++++++++|||+|+|+|++|..+...+ ++.+++++++.++++++.+
T Consensus 79 ~~~~~l~~~~~dnV~YlElr~~P~~~~~~~~~~~~~~~~~~i~~~~~~a~~----------------------------- 129 (331)
T PF00962_consen 79 YAYEVLEDFAEDNVVYLELRFSPQFHAQLGGNLSFDEVVEAIIEGIDRAEK----------------------------- 129 (331)
T ss_dssp HHHHHHHHHHHTTEEEEEEEESHHHHHTTTCSSTHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHcCCeEEEEEeccccccccCCCCCHHHHHHHHHhhhhhccc-----------------------------
Confidence 999999999999999999999998865555 8999999999999998754
Q ss_pred CCCceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHH
Q 024296 155 GKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEI 234 (269)
Q Consensus 155 ~~~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i 234 (269)
++++++|+|+|.+|+.+.+.+.+.++++.++++..||||||+|+|..+++..|.++|+.|++.|+++|+||||.++++++
T Consensus 130 ~~~i~~~li~~~~R~~~~~~~~~~~~~~~~~~~~~vvG~dl~g~E~~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~~~~~ 209 (331)
T PF00962_consen 130 EFGIKVRLIISVLRHFPDEWAEEIVELASKYPDKGVVGFDLAGDEDGGPPLKFAPAFRKAREAGLKLTVHAGETGGPEHI 209 (331)
T ss_dssp HHTTEEEEEEEEETTSTHHHHHHHHHHHHHTTTTTEEEEEEESSTTSTTGGGHHHHHHHHHHTT-EEEEEESSSSTHHHH
T ss_pred cccccccccccccccchHHHHHHHHHHHhhcccceEEEEEecCCcccCchHHHHHHHhhhcccceeecceecccCCcccc
Confidence 45699999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHh-cCCCcccccccC--CHHHHHHHHhCCCceeeC
Q 024296 235 QSMLD-FLPQRIGHACCF--EEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 235 ~~ai~-l~a~RIGHG~~~--~~~l~~~l~~~~I~lEic 269 (269)
++|+. +|++|||||+++ +|++++++++++|+||||
T Consensus 210 ~~ai~~l~~~RIgHG~~~~~~p~l~~~~~~~~I~iEvc 247 (331)
T PF00962_consen 210 RDAILLLGADRIGHGVRLIKDPELLELLAERQIPIEVC 247 (331)
T ss_dssp HHHHHTST-SEEEE-GGGGGSHHHHHHHHHTT-EEEE-
T ss_pred cchhhhccceeecchhhhhhhhHHHHHHHHhCCCeeeC
Confidence 99998 599999999987 689999999999999999
No 5
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=100.00 E-value=4e-49 Score=358.60 Aligned_cols=209 Identities=44% Similarity=0.673 Sum_probs=195.8
Q ss_pred CCcchhccccCCCCCHHHHHHHHHHhccCCCccchhhHHHHhhcCCCHHHHHHHhHHHHHhhCCHHHHHHHHHHHHHHHH
Q 024296 7 MPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFA 86 (269)
Q Consensus 7 lPK~eLH~HL~Gs~~~~tl~~la~~~~~~g~~~~~~~~~~~~~~~~~l~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~~ 86 (269)
|||+|||+||+||++++|+++|+++ +|++.|..+..++++++++++++++++++++
T Consensus 1 lPK~eLH~Hl~Gsi~~~~l~~l~~~------------------------~f~~~f~~~~~~l~~~~~l~~~~~~~~~~~~ 56 (305)
T cd00443 1 LPKVELHAHLSGSISPETLLELIKK------------------------EFFEKFLLVHNLLQKGEALARALKEVIEEFA 56 (305)
T ss_pred CCceeEEecCcCCCCHHHHHHHHHH------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999982 6999999999999999999999999999999
Q ss_pred hcCCeEEEEecCCCCcccC-CCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC-ceEEEEE
Q 024296 87 SENIVYLELRTTPKRNESI-GMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK-IYVRLLL 164 (269)
Q Consensus 87 ~dnV~Y~Elr~~p~~~~~~-g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~rli~ 164 (269)
+|||+|+|+|++|..+... +++.++++++++++++++++ .++ |++|+|+
T Consensus 57 ~d~V~Y~E~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~I~~~lI~ 107 (305)
T cd00443 57 EDNVQYLELRTTPRLLETEKGLTKEQYWLLVIEGISEAKQ-----------------------------WFPPIKVRLIL 107 (305)
T ss_pred HcCCEEEEEEcchhhcCcccCCCHHHHHHHHHHHHHHHHH-----------------------------HcCCeeEeEEE
Confidence 9999999999999887666 89999999999999998753 345 9999999
Q ss_pred EEeCCCCHH----HHHHHHHHHHhhCCCceEEEecCCCCCCC--ChhhHHHHHHHHHHcC-CceeeecCCCCChhHHHHH
Q 024296 165 SIDRRETTE----AAMETVKLALEMRDLGVVGIDLSGNPTKG--EWTTFLPALKFAREQG-LQITLHCGEIPNKEEIQSM 237 (269)
Q Consensus 165 ~~~R~~~~~----~~~~~~~~a~~~~~~~vvGidl~G~E~~~--~~~~f~~~f~~ar~~g-l~~t~HAGE~~~~e~i~~a 237 (269)
|++|+.+++ .+.+.++++.++.+ .||||||+|+|.++ ++..|.++|++||+.| +++|+||||++++++++++
T Consensus 108 ~~~R~~~~~~~~~~~~~~~~l~~~~~~-~vvG~Dl~g~E~~~~~~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~~v~~~ 186 (305)
T cd00443 108 SVDRRGPYVQNYLVASEILELAKFLSN-YVVGIDLVGDESKGENPLRDFYSYYEYARRLGLLGLTLHCGETGNREELLQA 186 (305)
T ss_pred EEeCCCChhhhhhhHHHHHHHHHHhcC-CEEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCcceEEeecCCCChHHHHHH
Confidence 999999998 99999999998766 59999999999998 8999999999999999 9999999999999999999
Q ss_pred HhcCCCcccccccC--CHHHHHHHHhCCCceeeC
Q 024296 238 LDFLPQRIGHACCF--EEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 238 i~l~a~RIGHG~~~--~~~l~~~l~~~~I~lEic 269 (269)
+.++++|||||+.+ +|++++++++++|++|+|
T Consensus 187 ~~~~~~RIgHg~~~~~~p~~~~~l~~~~i~ie~C 220 (305)
T cd00443 187 LLLLPDRIGHGIFLLKHPELIYLVKLRNIPIEVC 220 (305)
T ss_pred HHhccceeeceEecCCCHHHHHHHHHcCCEEEEC
Confidence 98669999999987 579999999999999999
No 6
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-47 Score=349.21 Aligned_cols=236 Identities=31% Similarity=0.470 Sum_probs=217.0
Q ss_pred hhhhcCCcchhccccCCCCCHHHHHHHHHHhccCCCccch------hhHHHHh--hcCCCHHHHHHHhHHHHHhhCCHHH
Q 024296 2 EWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFS------DVEHVIM--KSDRSLHEVFKLFDLIHVLTTDHAT 73 (269)
Q Consensus 2 ~~i~~lPK~eLH~HL~Gs~~~~tl~~la~~~~~~g~~~~~------~~~~~~~--~~~~~l~~f~~~f~~~~~l~~~~~~ 73 (269)
++++.+||+|||+||+|+++|+++++++++ +|+..++ .++++.. ..+.++++|++.|.....+++++++
T Consensus 6 ~~~~~~pkaelH~HL~g~l~p~~v~~la~r---~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~fl~~~y~~~~v~~~~~~ 82 (345)
T COG1816 6 ELIRHLPKAELHRHLEGSLRPELVLELARR---YGIALPPAEFDETILEELRAEYNKFNDLQEFLEKYYRGASVLRTEED 82 (345)
T ss_pred HHHhhchhhHhhhcccCCcCHHHHHHHHHH---hCccCCcccccchhHHHHHHHHhccccHHHHHHHHHHHHHhhccHHH
Confidence 578899999999999999999999999996 6765431 1233332 2368999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCC
Q 024296 74 VTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGT 153 (269)
Q Consensus 74 ~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (269)
+.++++++++++++||++|.|+||+|..++..|++.+.+++++.++++.+ .
T Consensus 83 ~~~la~~~~~~~~~~~~vy~Ei~f~p~~~t~~~l~~~~~~e~~~~~~~~~-----------------------------~ 133 (345)
T COG1816 83 FYRLAYEYLEDAAADNVVYAEIRFDPYLHTKRGLSVDTVVEGLIAGFRPA-----------------------------E 133 (345)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCcchhhhccCCHHHHHHHHHHHHHHH-----------------------------h
Confidence 99999999999999999999999999888999999999999999999876 3
Q ss_pred CCCCceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhH
Q 024296 154 RGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEE 233 (269)
Q Consensus 154 ~~~~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~ 233 (269)
+.+|+..++|+|+.|+.+.+.+.+.++.+.+++...++|+|++|+|.+.|+..|..+|+.+|++|+++|+||||.+++++
T Consensus 134 ~~~gi~s~li~~~~r~~~~e~~~~~~~~a~~~~~~~~~~~~l~~~e~~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~ 213 (345)
T COG1816 134 RDFGIHSKLIVCLLRHLGFESADEELELALRYRDKLVTGVGLAGSESGYPPELFVSLFKLARDNGLKLTIHAGEAGGPES 213 (345)
T ss_pred hccCCccceEEEEEeecCHHHHHHHHHHHhhcccccCccCCCCcccccCCHHHHHHHHHHHHHcCceEEEeccccCCcHH
Confidence 57899999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred HHHHHh-cCCCcccccccC--CHHHHHHHHhCCCceeeC
Q 024296 234 IQSMLD-FLPQRIGHACCF--EEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 234 i~~ai~-l~a~RIGHG~~~--~~~l~~~l~~~~I~lEic 269 (269)
+++|+. +|++|||||+.+ +|.++++++++|||||||
T Consensus 214 i~~al~~~~~~rI~HGi~~~~d~~L~~~l~~~qI~levC 252 (345)
T COG1816 214 IRDALDLLGAERIGHGIRAIEDPELLYRLAERQIPLEVC 252 (345)
T ss_pred HHHHHHHhchhhhccccccccCHHHHHHHHHhCCeeEEC
Confidence 999998 799999999987 789999999999999999
No 7
>PRK09358 adenosine deaminase; Provisional
Probab=100.00 E-value=2.7e-45 Score=337.89 Aligned_cols=237 Identities=34% Similarity=0.495 Sum_probs=210.2
Q ss_pred ChhhhcCCcchhccccCCCCCHHHHHHHHHHhccCCCccch-hhHHH---H-hhcCCCHHHHHHHhHHHHHhhCCHHHHH
Q 024296 1 MEWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFS-DVEHV---I-MKSDRSLHEVFKLFDLIHVLTTDHATVT 75 (269)
Q Consensus 1 ~~~i~~lPK~eLH~HL~Gs~~~~tl~~la~~~~~~g~~~~~-~~~~~---~-~~~~~~l~~f~~~f~~~~~l~~~~~~~~ 75 (269)
++|+++|||+|||+||+||++++|+++|+++ +|++++. +.+++ . ...+.+|.+|+..|.....++.++++++
T Consensus 4 ~~~~~~lpK~eLH~Hl~Gs~~~~~l~~l~~~---~~~~~p~~~~~~~~~~r~~~~~~~l~~~l~~~~~~~~~~~t~ed~~ 80 (340)
T PRK09358 4 LMIIRSLPKAELHLHLDGSLRPETILELARR---NGIALPATDVEELPWVRAAYDFRDLQSFLDKYDAGVAVLQTEEDLR 80 (340)
T ss_pred hHHHhcCCceeEEecccCCCCHHHHHHHHHH---cCCCCCCCCHHHHhhhcccccCCCHHHHHHHHHHHHHHhCCHHHHH
Confidence 3689999999999999999999999999996 6766542 33333 2 2346789999999998888999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 024296 76 RITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (269)
Q Consensus 76 ~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (269)
+.++.++++++++||.|+|+|++|..+...|++.+++++++.+++.++. .+
T Consensus 81 ~~~~~~~~e~~~~Gvty~E~~~~p~~~~~~gl~~~~~~~a~~~~~~~a~-----------------------------~~ 131 (340)
T PRK09358 81 RLAFEYLEDAAADGVVYAEIRFDPQLHTERGLPLEEVVEAVLDGLRAAE-----------------------------AE 131 (340)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeChhhhhhcCCCHHHHHHHHHHHHHHHH-----------------------------Hh
Confidence 9999999999999999999999998777779999999999999998763 45
Q ss_pred CCceEEEEEEEeCCCCHHHHHHHHHHHHh-hCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHH
Q 024296 156 KKIYVRLLLSIDRRETTEAAMETVKLALE-MRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEI 234 (269)
Q Consensus 156 ~~i~~rli~~~~R~~~~~~~~~~~~~a~~-~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i 234 (269)
+|+.++++++++|..+++.+.+.++.+.+ +.++.+||||++|+|...+++.|.++|+.|++.|+++|+|+||+.+++++
T Consensus 132 ~gi~~~li~~~~r~~~~~~~~~~~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~ 211 (340)
T PRK09358 132 FGISVRLILCFMRHFGEEAAARELEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAHAGEAGGPESI 211 (340)
T ss_pred cCceEEEEEEecCCCCHHHHHHHHHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHH
Confidence 79999999999999888877788777665 35567999999999998888999999999999999999999999888999
Q ss_pred HHHHh-cCCCcccccccC--CHHHHHHHHhCCCceeeC
Q 024296 235 QSMLD-FLPQRIGHACCF--EEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 235 ~~ai~-l~a~RIGHG~~~--~~~l~~~l~~~~I~lEic 269 (269)
.++++ +|++|||||+.+ +|+++++|++++|++|+|
T Consensus 212 ~~al~~lg~~ri~Hg~~l~~~~~~~~~l~~~gi~v~~c 249 (340)
T PRK09358 212 WEALDELGAERIGHGVRAIEDPALMARLADRRIPLEVC 249 (340)
T ss_pred HHHHHHcCCcccchhhhhccCHHHHHHHHHcCCeEEEC
Confidence 99998 899999999998 578999999999999998
No 8
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=100.00 E-value=1.3e-44 Score=344.82 Aligned_cols=239 Identities=24% Similarity=0.275 Sum_probs=198.8
Q ss_pred hhhhcCCc-chhccccCCCCCHHHHHHHHHHhccCCCcc-------------c---------------hh---------h
Q 024296 2 EWFASMPK-VELHAHLNGSIRDSTLLELARVLGEKGVIV-------------F---------------SD---------V 43 (269)
Q Consensus 2 ~~i~~lPK-~eLH~HL~Gs~~~~tl~~la~~~~~~g~~~-------------~---------------~~---------~ 43 (269)
.+|++||| +-||+|++++++.++|++.+... .|+.+ | ++ +
T Consensus 72 ~i~~~MPKG~~LH~H~~a~~~~d~li~~~~~~--~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~w~~~~~~r~~~~~~~f 149 (479)
T TIGR01431 72 KIISSMPKGGALHLHDLAIVSTDWLIKNLTYR--DNLWVCQGKGNKEVLRFRFPKPKPDQCDCKWELLEDVRKSHNAEEF 149 (479)
T ss_pred HHHHhCCCchhhccCccccCCHHHHHHHHhCC--CCeEEEecCCCceeEEEEeccCCCCCCCceeeeHHHHHHhCCHHHH
Confidence 57999999 79999999999999999655431 22110 0 00 1
Q ss_pred HHHHhh-----------c----CCCHHHHHHHhHHHHHhhCCHHHHHHHHHHHHHHHHhcCCeEEEEecCC-CCcccCC-
Q 024296 44 EHVIMK-----------S----DRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTP-KRNESIG- 106 (269)
Q Consensus 44 ~~~~~~-----------~----~~~l~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~dnV~Y~Elr~~p-~~~~~~g- 106 (269)
+.+..+ . ..-|..|++.|..+.++++++++++++++++++++++|||+|+|+|++| ..+...|
T Consensus 150 ~~~l~~~~~~~~~~~~~~~~~~~~~W~~F~~~f~~~~~ll~y~p~~~~~~~~~l~d~~~DgV~Y~ElR~~p~~~~~~~G~ 229 (479)
T TIGR01431 150 DDYLRENFTLYTTVPELDYPTINEVWERFGSIFALLDGLLFYAPSWRDYYYRALEEFYADNVQYLELRSTLFILYELEGT 229 (479)
T ss_pred HHHHHHhcccCcCCcccccCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHcCCEEEEEEecCchHhhcCCC
Confidence 112110 0 1347899999999999999999999999999999999999999999998 4454555
Q ss_pred -CCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCceEEEEEEEeCCCCHHHHHHHHHHHHhh
Q 024296 107 -MSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEM 185 (269)
Q Consensus 107 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~~~R~~~~~~~~~~~~~a~~~ 185 (269)
++.+++++++.++++++++. .++ ++.+|+|+|.+|+.+++.+.+.+++|.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~--------------------------~~~-fi~~rlI~~~~R~~~~~~~~~~~~~a~~~ 282 (479)
T TIGR01431 230 SHDEEDSVRIYKEVTEKFMAE--------------------------HPD-FIGSKLIYSPLRNKDKEELDNYIKVAMEL 282 (479)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--------------------------CCC-CeEEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 58899999999999988651 222 68999999999999999999999999886
Q ss_pred C---CCceEEEecCCCCC-CCChhhHHHHHHHHH-HcCCceeeecCCCC-----ChhHHHHHHhcCCCcccccccC--CH
Q 024296 186 R---DLGVVGIDLSGNPT-KGEWTTFLPALKFAR-EQGLQITLHCGEIP-----NKEEIQSMLDFLPQRIGHACCF--EE 253 (269)
Q Consensus 186 ~---~~~vvGidl~G~E~-~~~~~~f~~~f~~ar-~~gl~~t~HAGE~~-----~~e~i~~ai~l~a~RIGHG~~~--~~ 253 (269)
+ ++.||||||+|+|+ +.|+..|.+.|..++ ..|+++|+||||+. +++||++||.||++|||||+++ +|
T Consensus 283 k~~~p~~vvGfDL~G~E~~g~pl~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~~d~nl~dAIlLg~~RIGHG~~l~~~P 362 (479)
T TIGR01431 283 KEKYPDFVAGFDLVGQEDKGRSLLDFIDALLGPSDKEKLPYFFHAGETNWQGTTVDENLIDALLLNTTRIGHGFALVKHP 362 (479)
T ss_pred HhhCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHhCCCCEEEecCCcCCCCCCchhHHHHHHHcCCccccCcccccCCH
Confidence 3 45699999999996 568899999998544 48999999999996 4589999999999999999987 69
Q ss_pred HHHHHHHhCCCceeeC
Q 024296 254 EEWRKLKSSKIPVRIS 269 (269)
Q Consensus 254 ~l~~~l~~~~I~lEic 269 (269)
.+++++++++|+||||
T Consensus 363 ~l~~~vke~~I~lEvC 378 (479)
T TIGR01431 363 LVLQMLKERNIAVEVN 378 (479)
T ss_pred HHHHHHHHhCCeEEEC
Confidence 9999999999999999
No 9
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=100.00 E-value=5.8e-43 Score=320.43 Aligned_cols=231 Identities=33% Similarity=0.499 Sum_probs=207.0
Q ss_pred CCcchhccccCCCCCHHHHHHHHHHhccCCCccch---hhHHHHhh--cCCCHHHHHHHhHHHHHhhCCHHHHHHHHHHH
Q 024296 7 MPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFS---DVEHVIMK--SDRSLHEVFKLFDLIHVLTTDHATVTRITQEV 81 (269)
Q Consensus 7 lPK~eLH~HL~Gs~~~~tl~~la~~~~~~g~~~~~---~~~~~~~~--~~~~l~~f~~~f~~~~~l~~~~~~~~~~~~~~ 81 (269)
|||+|||+||+||++++|+|+++++ +|..+++ +.+.+... .+.+|.+|++.|.....++.+++++++.++.+
T Consensus 1 lpK~eLH~Hl~Gsi~~~~l~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~t~e~l~~~~~~~ 77 (324)
T TIGR01430 1 LPKAELHLHLEGSIRPETLLELAQK---NGIPLPADLQSGEELKEAYDKFRDLQDFLAKYDFGVEVLRTEDDFKRLAYEY 77 (324)
T ss_pred CCceeeEecccCCCCHHHHHHHHHH---cCCCCCCCcccHHHHHhhhccCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7999999999999999999999996 5655543 33344322 26799999999998889999999999999999
Q ss_pred HHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCceEE
Q 024296 82 VEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVR 161 (269)
Q Consensus 82 ~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r 161 (269)
+++++++||.|+|+|++|..+...|++.+++++++++++.++. .++|+.++
T Consensus 78 ~~e~~~~Gv~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~-----------------------------~~~gi~~~ 128 (324)
T TIGR01430 78 VEKAAKDGVVYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAE-----------------------------RDFGIKSR 128 (324)
T ss_pred HHHHHHcCCEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHH-----------------------------HhcCCeEE
Confidence 9999999999999999998877889999999999999998764 35689999
Q ss_pred EEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHh-c
Q 024296 162 LLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-F 240 (269)
Q Consensus 162 li~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~-l 240 (269)
+|+|++|+.+++.+.+.++++.+++.+.++|||++|+|...+++.|..+|+.|++.|+++++|+||+.++.++.+++. +
T Consensus 129 li~~~~r~~~~~~~~~~~~~~~~~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~ 208 (324)
T TIGR01430 129 LILCGMRHKQPEAAEETLELAKPYKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDL 208 (324)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhhccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHc
Confidence 999999999999999999999987766799999999998777889999999999999999999999888888888885 8
Q ss_pred CCCcccccccC--CHHHHHHHHhCCCceeeC
Q 024296 241 LPQRIGHACCF--EEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 241 ~a~RIGHG~~~--~~~l~~~l~~~~I~lEic 269 (269)
|++|||||+.+ +|+++++|++++|++|+|
T Consensus 209 g~~ri~Hg~~l~~~~~~i~~l~~~gi~v~~c 239 (324)
T TIGR01430 209 GATRIGHGVRALEDPELLKRLAQENITLEVC 239 (324)
T ss_pred CchhcchhhhhccCHHHHHHHHHcCceEEEC
Confidence 99999999998 678999999999999998
No 10
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=100.00 E-value=1.1e-40 Score=305.11 Aligned_cols=232 Identities=34% Similarity=0.523 Sum_probs=206.3
Q ss_pred cCCcchhccccCCCCCHHHHHHHHHHhccCCCccch-hh--HHHH--hhcCCCHHHHHHHhHHHHHhhCCHHHHHHHHHH
Q 024296 6 SMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFS-DV--EHVI--MKSDRSLHEVFKLFDLIHVLTTDHATVTRITQE 80 (269)
Q Consensus 6 ~lPK~eLH~HL~Gs~~~~tl~~la~~~~~~g~~~~~-~~--~~~~--~~~~~~l~~f~~~f~~~~~l~~~~~~~~~~~~~ 80 (269)
.|||+|||+||+||++++|||+++++ +|...+. .. .... ...+.+|.+|++.|.....+..++++++..++.
T Consensus 1 ~lpK~elH~Hl~Gs~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ed~~~~~~~ 77 (325)
T cd01320 1 NLPKAELHLHLDGSLRPETILELAKK---NGITLPASDVELLELVVAAYNFSDLQDFLAKYDFGLSVLQTEEDFERLAYE 77 (325)
T ss_pred CCCceEEeecccCCCCHHHHHHHHHH---hCCCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 48999999999999999999999996 4544432 11 1122 235678999999999888888999999999999
Q ss_pred HHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCceE
Q 024296 81 VVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYV 160 (269)
Q Consensus 81 ~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (269)
.+++++++||.|+|+|++|..+...|++.+++++++++++.++. .++|+.+
T Consensus 78 ~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~-----------------------------~~~gi~~ 128 (325)
T cd01320 78 YLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAE-----------------------------AEFGIKA 128 (325)
T ss_pred HHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHH-----------------------------HhcCCeE
Confidence 99999999999999999998777788999999999999998864 3569999
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHh-
Q 024296 161 RLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD- 239 (269)
Q Consensus 161 rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~- 239 (269)
+++++++|..+++.+.+.++++.++..+.++|+|++|.|...+++.|.++++.|++.|+++++|+||+.+++++.++++
T Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~ 208 (325)
T cd01320 129 RLILCGLRHLSPESAQETLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDL 208 (325)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHH
Confidence 9999999998888999999999888777799999999998888899999999999999999999999988888999998
Q ss_pred cCCCcccccccC--CHHHHHHHHhCCCceeeC
Q 024296 240 FLPQRIGHACCF--EEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 240 l~a~RIGHG~~~--~~~l~~~l~~~~I~lEic 269 (269)
+|++|||||+.+ +|+.+++|+++||++++|
T Consensus 209 ~g~~~i~H~~~l~~~~~~~~~l~~~gi~v~~~ 240 (325)
T cd01320 209 LGAERIGHGIRAIEDPELVKRLAERNIPLEVC 240 (325)
T ss_pred cCCcccchhhccCccHHHHHHHHHcCCeEEEC
Confidence 899999999998 578999999999999998
No 11
>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.
Probab=99.69 E-value=1.2e-15 Score=145.60 Aligned_cols=228 Identities=20% Similarity=0.236 Sum_probs=140.9
Q ss_pred hhcCCcchhccccCCCCCHHHHHHHHHHh-ccCCCc-c-ch-----hhHHHHh-----------------hc---CCCHH
Q 024296 4 FASMPKVELHAHLNGSIRDSTLLELARVL-GEKGVI-V-FS-----DVEHVIM-----------------KS---DRSLH 55 (269)
Q Consensus 4 i~~lPK~eLH~HL~Gs~~~~tl~~la~~~-~~~g~~-~-~~-----~~~~~~~-----------------~~---~~~l~ 55 (269)
+.+.+|||.|+|+++|++...|++..++- .+.+-. + +. ++.++.. .. ...++
T Consensus 55 fyn~~KVD~~vh~s~cm~~k~Ll~FI~~k~~~~pd~vv~~~~g~~~TL~e~f~~l~~~~~~ltvd~L~~~a~~~~~~rfd 134 (496)
T cd01319 55 FYNVRKVDTHVHHSACMNQKHLLRFIKKKLRTEPDEVVIFRDGKKLTLKEVFDSLKLTAYDLSVDTLDVHADRNTFHRFD 134 (496)
T ss_pred ceeCceecccccccccCCHHHHHHHHHHHHHcCCCcEEECCCCccccHHHHHHHcCCChhhCchhhcCcCCCCCcccccc
Confidence 46789999999999999999999876542 111100 0 00 1111110 00 11112
Q ss_pred HH------------HHHhHHHHHhhCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhh
Q 024296 56 EV------------FKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAV 123 (269)
Q Consensus 56 ~f------------~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~ 123 (269)
.| .+.|-.....+.. +-+.+++.++++++-...-+++|.|.+.. |-+.+| ++.+..=+.+.
T Consensus 135 ~fn~kynp~g~~~Lr~iFLktdn~~~G-~y~Ael~k~v~~~le~~kyq~~E~rlsiy-----G~~~~E-w~~lA~W~~~~ 207 (496)
T cd01319 135 KFNLKYNPIGESRLREIFLKTDNYING-RYLAEITKEVFSDLEESKYQHAEYRLSIY-----GRSKDE-WDKLASWVVDN 207 (496)
T ss_pred ccccccCccchHHHHHHHhccCCCcch-HhHHHHHHHHHHHHHhccceeEEEEEEEe-----CCCHHH-HHHHHHHHHHc
Confidence 22 2223222233333 24688899999999999999999999653 334444 33333333221
Q ss_pred hhccccccccccccccccccccccccccCCCCCCceEEEEEEEeCCCCHH-------HHHHHHHHHHh------hCC---
Q 024296 124 SAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTE-------AAMETVKLALE------MRD--- 187 (269)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~~~R~~~~~-------~~~~~~~~a~~------~~~--- 187 (269)
. - ..-.+|+++.+.|-.+.- .-.++++..+. ..+
T Consensus 208 ~----------------------------l--~s~n~rW~iqipR~y~~~~~~g~~~~Fq~~L~nIF~PLfeat~~P~~~ 257 (496)
T cd01319 208 D----------------------------L--FSPNVRWLIQIPRLYDVYKKSGIVNSFQEMLENIFEPLFEATKDPSSH 257 (496)
T ss_pred C----------------------------C--CCCCceEEEecchhHHHHhhcCCcCCHHHHHHHHHHHHHHHhcCcccC
Confidence 1 1 112578999888865421 12344443332 111
Q ss_pred -------CceEEEecCCCCCCC-------------------Ch-hhHH-------HHHHHHHHc----CCceeeecCCCC
Q 024296 188 -------LGVVGIDLSGNPTKG-------------------EW-TTFL-------PALKFAREQ----GLQITLHCGEIP 229 (269)
Q Consensus 188 -------~~vvGidl~G~E~~~-------------------~~-~~f~-------~~f~~ar~~----gl~~t~HAGE~~ 229 (269)
..|+|||++.+|.+. || .-|+ ..+...|+. -+.+++||||.+
T Consensus 258 p~l~~fL~~v~gfd~VddEs~~~~~~~~~~p~P~~w~~~~nPpy~Yy~YY~yaNi~~LN~~R~~rglntf~~r~HaGE~g 337 (496)
T cd01319 258 PELHVFLQQVIGFDSVDDESKSERRFTRKFPKPEEWTSEENPPYSYYLYYMYANITTLNSFRKARGFNTFVLRPHCGEAG 337 (496)
T ss_pred HHHHHHHHhCCceEEEcCCCccccCCCcCCCChhcCCCCCCCCceeeHHHHHHHHHHHHHHHHHcCCCCcceeeecCCCC
Confidence 149999999998752 11 1111 123333332 389999999999
Q ss_pred ChhHHHHHHhcCCCcccccccC--CHHHHHHHHhCCCceeeC
Q 024296 230 NKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 230 ~~e~i~~ai~l~a~RIGHG~~~--~~~l~~~l~~~~I~lEic 269 (269)
++++|.+|+ ++|+|||||+.+ +|.++.++++++|+||||
T Consensus 338 ~~~~l~~al-L~adRIGHGv~l~~dp~L~~l~~~~qI~levC 378 (496)
T cd01319 338 DIDHLASAF-LLAHGISHGINLRKVPVLQYLYYLTQIGIAMS 378 (496)
T ss_pred ChHHHHHHh-hcCcccccccccCCCHHHHHHHHHcCCeEEEe
Confidence 999999999 899999999987 578888889999999999
No 12
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=99.65 E-value=1.7e-14 Score=134.35 Aligned_cols=165 Identities=10% Similarity=0.059 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccc
Q 024296 69 TDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMND 148 (269)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (269)
-++++++..++..+.++.+.||.|+|++.. .|++.++.+. +.++++++.
T Consensus 88 ~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~~------~g~~~~~~~~-~~~a~~~~~------------------------ 136 (377)
T TIGR01224 88 ASEEELLKLALFRLKSMLRSGTTTAEVKSG------YGLDLETELK-MLRAAKALH------------------------ 136 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHCCceEEEeccc------CCCCHHHHHH-HHHHHHHHH------------------------
Confidence 478899999999999999999999998732 3566666553 777776652
Q ss_pred cccCCCCCCceEEEEEEEeCCCCHH-------HHHHHHHHHHh-h-CCCceEEEecCCCCCCCChhhHHHHHHHHHHcCC
Q 024296 149 ACNGTRGKKIYVRLLLSIDRRETTE-------AAMETVKLALE-M-RDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL 219 (269)
Q Consensus 149 ~~~~~~~~~i~~rli~~~~R~~~~~-------~~~~~~~~a~~-~-~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl 219 (269)
.+.++.+.++.+..+.++.+ ...+..+.+.+ . ....+.|+|+.|.+...+++.+..+++.|++.|+
T Consensus 137 -----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~A~~~g~ 211 (377)
T TIGR01224 137 -----EEQPVDVVTTFLGAHAVPPEFQGRPDDYVDGICEELIPQVAEEGLASFADVFCEAGVFSVEQSRRILQAAQEAGL 211 (377)
T ss_pred -----hhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHHHHHHHhCCCCeeEEEecCCCcCHHHHHHHHHHHHHCCC
Confidence 34577777764432233321 11122222222 1 2235999999999888888899999999999999
Q ss_pred ceeeecCCCCChhHHHHHHhcCCCcccccccCCHHHHHHHHhCCCceeeC
Q 024296 220 QITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 220 ~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~~~~l~~~l~~~~I~lEic 269 (269)
++++|++|......+..+..+|..||+||+.++++.+++++++++.+.+|
T Consensus 212 ~v~~H~~e~~~~~~~~~~~~~g~~~~~H~~~~~~~~l~~la~~g~~~~~~ 261 (377)
T TIGR01224 212 PVKLHAEELSNLGGAELAAKLGAVSADHLEHASDAGIKALAEAGTVAVLL 261 (377)
T ss_pred CEEEEecCCCCCCHHHHHHHcCCCccHHHhcCCHHHHHHHHhcCCEEEEC
Confidence 99999999876777777777899999999999999999999999999887
No 13
>TIGR01429 AMP_deaminase AMP deaminase. This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model.
Probab=99.61 E-value=5.3e-15 Score=143.57 Aligned_cols=160 Identities=21% Similarity=0.250 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccC
Q 024296 73 TVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNG 152 (269)
Q Consensus 73 ~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (269)
-+.+++.++++++-....+++|.|.+.. |-+.+| ++.+..=+.+.
T Consensus 274 YfAelik~v~~~le~skyQ~~E~rlsiy-----G~~~~E-W~kLA~W~~~~----------------------------- 318 (611)
T TIGR01429 274 YFAELVKEVFTDLEDSKYQYAEPRLSIY-----GRSPKE-WDSLARWIIDH----------------------------- 318 (611)
T ss_pred hHHHHHHHHHHHHHhcCceeEEEEEEEe-----CCCHHH-HHHHHHHHHHc-----------------------------
Confidence 4688999999999999999999999643 334444 33332222221
Q ss_pred CCCCCceEEEEEEEeCCCCH-------HHHHHHHHHHHh------hCC----------CceEEEecCCCCCCCC------
Q 024296 153 TRGKKIYVRLLLSIDRRETT-------EAAMETVKLALE------MRD----------LGVVGIDLSGNPTKGE------ 203 (269)
Q Consensus 153 ~~~~~i~~rli~~~~R~~~~-------~~~~~~~~~a~~------~~~----------~~vvGidl~G~E~~~~------ 203 (269)
.-+.-.+|+++.+-|-.+. ..-.++++..+. ..+ ..|+|||.+.+|.+..
T Consensus 319 -~l~s~n~rW~IqiPRly~v~k~~g~v~~Fq~~L~NIF~PLFeat~~P~~~p~L~~fL~~v~GfD~VddEs~~e~~~f~~ 397 (611)
T TIGR01429 319 -DVFSPNVRWLIQVPRLYDVYRSKKLVPNFGDMLENVFLPLFEVTKDPSSHPELHLFLQQVTGFDSVDDESKHEDHMFSR 397 (611)
T ss_pred -CCCCCCccEEEEcchhHHHHhcCCCcCCHHHHHHHHHHHHHHHhcCCccCHHHHHHHHhccceEEEcCCcccccccccC
Confidence 1112257888888875543 112334443321 011 1499999998877532
Q ss_pred ----hhh-----------HH-------HHHHHHHH-cCCc---eeeecCCCCChhHHHHHHhcCCCcccccccC--CHHH
Q 024296 204 ----WTT-----------FL-------PALKFARE-QGLQ---ITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEE 255 (269)
Q Consensus 204 ----~~~-----------f~-------~~f~~ar~-~gl~---~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~~~l 255 (269)
|.+ |+ ..+...|+ .|++ ++.||||.++++++++|+ ++++|||||+.+ +|.+
T Consensus 398 ~~~~P~~w~~~~NPpy~Yy~YY~yaNl~~LN~~R~~rGLnt~~LrpHaGEag~~e~l~~A~-L~adRIgHGi~l~~dp~L 476 (611)
T TIGR01429 398 KFPSPDEWTSEQNPPYSYYLYYMYANIMVLNNFRRERGLNTFLLRPHCGEAGSVDHLVSAF-LTSHGINHGILLRKVPVL 476 (611)
T ss_pred CCCCcccccCCCCCCceeeHHHHHHHHHHHHHHHHHcCCCccceeecCCCCCCHHHHHHHh-hcCcccccceecCCCHHH
Confidence 111 11 22333343 3666 999999999999999998 899999999987 6889
Q ss_pred HHHHHhCCCceeeC
Q 024296 256 WRKLKSSKIPVRIS 269 (269)
Q Consensus 256 ~~~l~~~~I~lEic 269 (269)
+.++.+++|+||||
T Consensus 477 ~yl~~~~qI~LevC 490 (611)
T TIGR01429 477 QYLYYLTQIPIAMS 490 (611)
T ss_pred HHHHHHcCCeEEEc
Confidence 99999999999999
No 14
>PLN03055 AMP deaminase; Provisional
Probab=99.60 E-value=8e-15 Score=141.97 Aligned_cols=227 Identities=17% Similarity=0.235 Sum_probs=139.7
Q ss_pred hcCCcchhccccCCCCCHHHHHHHHHHh-ccCC--Cccch-----hhHHHHh-----------------hcCCC---H--
Q 024296 5 ASMPKVELHAHLNGSIRDSTLLELARVL-GEKG--VIVFS-----DVEHVIM-----------------KSDRS---L-- 54 (269)
Q Consensus 5 ~~lPK~eLH~HL~Gs~~~~tl~~la~~~-~~~g--~~~~~-----~~~~~~~-----------------~~~~~---l-- 54 (269)
.+.-|||-|+|+.+|++...|++..++- .+.+ +..+. ++.+++. ..... +
T Consensus 146 yn~rKVDthvh~s~cm~qk~LL~FIk~k~~~~pd~vV~~~~gk~~TL~evfe~l~~~~~dLtVd~Ldvha~~~~fhrfD~ 225 (602)
T PLN03055 146 YNVRKVDTHVHHSSCMNQKHLLRFIKSKLRKEPDEVVIFRDGKYLTLREVFESLDLTGYDLNVDLLDVHADKNTFHRFDK 225 (602)
T ss_pred eeeeEeeccccccccCCHHHHHHHHHHHHHcCCCcEeecCCCcchhHHHHHHHcCCCcccCcccccCccCCCCccccccc
Confidence 4556999999999999999999875542 1111 00000 1111110 00111 1
Q ss_pred ----------HHHHHHhHHHHHhhCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhh
Q 024296 55 ----------HEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVS 124 (269)
Q Consensus 55 ----------~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~ 124 (269)
.+..+.|-.....+.. +-+.+++.++++++-....+++|.|.+.. |-+.+| ++.+..=+.+..
T Consensus 226 fn~kynp~g~s~Lr~iFLktdN~i~G-~YlAel~k~v~~~le~skyQ~~E~rlsiY-----G~~~~E-W~kLA~W~~~~~ 298 (602)
T PLN03055 226 FNLKYNPCGQSRLREIFLKQDNLIQG-RFLAELTKEVFSDLEASKYQMAEYRISIY-----GRKQSE-WDQLASWIVNNR 298 (602)
T ss_pred ccccCCccchHHHHHHHcCcCCCcch-hhHHHHHHHHHHHHHhccceeEEEEEEEe-----CCCHHH-HHHHHHHHHHcC
Confidence 1222333333333433 35788999999999999999999999654 334443 333322222211
Q ss_pred hccccccccccccccccccccccccccCCCCCCceEEEEEEEeCCCCHH-------HHHHHHHHHHh------hCC----
Q 024296 125 AVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTE-------AAMETVKLALE------MRD---- 187 (269)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~~~R~~~~~-------~~~~~~~~a~~------~~~---- 187 (269)
-..-.+|+++.+-|-.+.- .-.++++..+. ..+
T Consensus 299 ------------------------------l~s~n~rW~IqiPRly~~~~~~g~v~~Fqd~L~NIF~PLFeatl~P~~hp 348 (602)
T PLN03055 299 ------------------------------LYSENVVWLIQLPRLYNVYKEMGIVQSFQQILDNIFKPLFEVTVDPSSHP 348 (602)
T ss_pred ------------------------------cCCCCceEEEecCcchhhhhcCCCcCCHHHHHHHHHHHHHHHHcCcccCH
Confidence 1112578888888844321 12334443322 111
Q ss_pred ------CceEEEecCCCCCCC-------------------Ch-hhHH-------HHHHHHHHc-C---CceeeecCCCCC
Q 024296 188 ------LGVVGIDLSGNPTKG-------------------EW-TTFL-------PALKFAREQ-G---LQITLHCGEIPN 230 (269)
Q Consensus 188 ------~~vvGidl~G~E~~~-------------------~~-~~f~-------~~f~~ar~~-g---l~~t~HAGE~~~ 230 (269)
..|+|||.+.+|.+. || .-|+ ..+...|+. | +.++.||||.++
T Consensus 349 ~L~~fL~~v~gfD~VddEs~~e~~~~~~~~~P~~W~~~~NPpy~Yy~YY~yaNl~~LN~lR~~rglnT~~~rpHAGEag~ 428 (602)
T PLN03055 349 QLHVFLKMVVGFDMVDDESKPERRPTKHMQTPEQWDIPFNPAYSYWAYYVYANLYTLNKLRESKGLNTIKFRPHAGEAGD 428 (602)
T ss_pred HHHHHHHhcCCceeecCCCccccccccCCCChhhCcCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCccccCCCCCC
Confidence 149999999988842 11 1111 123333332 3 889999999999
Q ss_pred hhHHHHHHhcCCCcccccccC--CHHHHHHHHhCCCceeeC
Q 024296 231 KEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 231 ~e~i~~ai~l~a~RIGHG~~~--~~~l~~~l~~~~I~lEic 269 (269)
+++|.+|+ +|++|||||+.+ +|.++.++++++|+||||
T Consensus 429 ~~~v~~al-L~a~RIgHGi~l~~dP~L~yl~~~~qI~LevC 468 (602)
T PLN03055 429 IDHLAAAF-LLAHNIAHGNNLRKSPGLQYLYYLAQIGLAMS 468 (602)
T ss_pred HHHHHHHh-hCCceecCccccCCCHHHHHHHHHcCCeEEEc
Confidence 99999998 899999999987 699999999999999999
No 15
>PLN02768 AMP deaminase
Probab=99.60 E-value=1e-14 Score=143.76 Aligned_cols=227 Identities=17% Similarity=0.214 Sum_probs=139.3
Q ss_pred hcCCcchhccccCCCCCHHHHHHHHHHh-ccCC-Ccc-ch-----hhHHHHh-----------------hc---CCCHH-
Q 024296 5 ASMPKVELHAHLNGSIRDSTLLELARVL-GEKG-VIV-FS-----DVEHVIM-----------------KS---DRSLH- 55 (269)
Q Consensus 5 ~~lPK~eLH~HL~Gs~~~~tl~~la~~~-~~~g-~~~-~~-----~~~~~~~-----------------~~---~~~l~- 55 (269)
.+.-|||-|+|+.+|++...|++..++- .+.+ -.+ +. ++.+++. .. ...++
T Consensus 379 YnvrKVDthvh~sacMnqk~LLrFIk~kl~~epd~vV~~~dGk~~TL~evFe~l~lt~ydLsVD~Ldvha~~~tfhRfDk 458 (835)
T PLN02768 379 YNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDK 458 (835)
T ss_pred eeeeEeeccchhhccCCHHHHHHHHHHHHhcCCCceeeccCCccccHHHHHHHcCCcccCCcccccccCCCccccccccc
Confidence 4566999999999999999999876542 1111 000 00 1111111 00 01111
Q ss_pred -----------HHHHHhHHHHHhhCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhh
Q 024296 56 -----------EVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVS 124 (269)
Q Consensus 56 -----------~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~ 124 (269)
+..+.|-.....+.. +-+.+++.++++++-....+++|.|++.. |-+.+| ++.+..=+.+.
T Consensus 459 Fn~kynP~G~s~LReiFLktDN~i~G-rYfAELiK~V~~dlE~sKyQ~aE~RlsIY-----Gr~~~E-W~kLA~W~v~~- 530 (835)
T PLN02768 459 FNLKYNPCGQSRLREIFLKQDNLIQG-RFLAELTKQVFSDLEASKYQMAEYRISIY-----GRKQSE-WDQLASWIVNN- 530 (835)
T ss_pred cccccCccchHHHHHHHcCcCCCCCh-hhHHHHHHHHHHHHHhccceeeEEEEEec-----CCCHHH-HHHHHHHHHHc-
Confidence 222223222333333 35788899999999999999999999853 334444 32332222221
Q ss_pred hccccccccccccccccccccccccccCCCCCCceEEEEEEEeCCCCHH-------HHHHHHHHHHh------hCC----
Q 024296 125 AVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTE-------AAMETVKLALE------MRD---- 187 (269)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~~~R~~~~~-------~~~~~~~~a~~------~~~---- 187 (269)
.-+.-.+|+++.+-|-.+.- .-.++++..+. ..+
T Consensus 531 -----------------------------~l~S~nvRWlIQIPRlY~i~k~~g~v~nFqd~L~NIF~PLFeATl~P~~hp 581 (835)
T PLN02768 531 -----------------------------ELYSENVVWLIQLPRLYNVYKEMGIVTSFQNILDNIFIPLFEVTVDPDSHP 581 (835)
T ss_pred -----------------------------CCCCCCceEEEEcccchhhhhcCCccCCHHHHHHHHHHHHHHHhcCCccCH
Confidence 11122578888888754321 12334443332 111
Q ss_pred ------CceEEEecCCCCCCC-------------------Ch-hhHH-------HHHHHHHH-cC---CceeeecCCCCC
Q 024296 188 ------LGVVGIDLSGNPTKG-------------------EW-TTFL-------PALKFARE-QG---LQITLHCGEIPN 230 (269)
Q Consensus 188 ------~~vvGidl~G~E~~~-------------------~~-~~f~-------~~f~~ar~-~g---l~~t~HAGE~~~ 230 (269)
..|+|||.+.+|.+. || .-|+ .++...|+ .| ++++.||||.++
T Consensus 582 ~L~~FL~~V~GFDsVdDESk~e~~~~~~~p~P~~W~~~~NPPyaYYlYYmyANi~~LN~lR~~rGlNTf~fRPHAGEag~ 661 (835)
T PLN02768 582 QLHVFLKQVVGLDLVDDESKPERRPTKHMPTPAQWTNVFNPAFSYYVYYCYANLYTLNKLRESKGMTTIKFRPHSGEAGD 661 (835)
T ss_pred HHHHHHHhcCCceeecCCCccccccCcCCCChhhCcCCCCCChhhhHHHHHHHHHHHHHHHHHCCCCccccccccCCCCC
Confidence 149999999988641 11 1111 22333433 23 889999999999
Q ss_pred hhHHHHHHhcCCCcccccccC--CHHHHHHHHhCCCceeeC
Q 024296 231 KEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 231 ~e~i~~ai~l~a~RIGHG~~~--~~~l~~~l~~~~I~lEic 269 (269)
+++|++|+ ++++|||||+.+ +|.++.++..++|+||||
T Consensus 662 ~e~I~~Al-L~AdRIgHGv~l~kdP~LqyL~~l~qIgLevC 701 (835)
T PLN02768 662 IDHLAATF-LTCHNIAHGINLRKSPVLQYLYYLAQIGLAMS 701 (835)
T ss_pred HHHHHHHH-hcCCccCCccccCcCHHHHHHHHHcCCeEEEC
Confidence 99999999 899999999987 689999999999999999
No 16
>PTZ00310 AMP deaminase; Provisional
Probab=99.55 E-value=5.5e-14 Score=145.43 Aligned_cols=160 Identities=15% Similarity=0.218 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccC
Q 024296 73 TVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNG 152 (269)
Q Consensus 73 ~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (269)
-+.+++.+++.++-++.-+++|.|.+.. |-+.+| ++.+..=+-+.
T Consensus 948 YfAel~K~v~~~le~skyq~aE~RlSIY-----G~~~~E-W~kLA~W~~~~----------------------------- 992 (1453)
T PTZ00310 948 YFAELIKDVFEQYSRDRFTYAENRLSIY-----GINVKE-WDDLAHWFDTH----------------------------- 992 (1453)
T ss_pred hHHHHHHHHHHHHHhccceeeeeeEeee-----CCCHHH-HHHHHHHHHHc-----------------------------
Confidence 4688899999999999999999999873 345554 33333323221
Q ss_pred CCCCCceEEEEEEEeCCCCHH-------HHHHHHHHHHh------hCC----------CceEEEecCCCCCCCC------
Q 024296 153 TRGKKIYVRLLLSIDRRETTE-------AAMETVKLALE------MRD----------LGVVGIDLSGNPTKGE------ 203 (269)
Q Consensus 153 ~~~~~i~~rli~~~~R~~~~~-------~~~~~~~~a~~------~~~----------~~vvGidl~G~E~~~~------ 203 (269)
.-..-.+|+++.+.|-.+.- .-.+.++..+. ..+ ..|+|||.+.+|.+..
T Consensus 993 -~l~S~nvrW~IQiPRlY~~~k~~g~v~~F~~~L~nIF~PLFeat~~P~~hp~L~~FL~~v~gfDsVddEsk~e~~~~~~ 1071 (1453)
T PTZ00310 993 -GMASKHNKWMIQVPRVYKVFRAQNVIGSFGQYLDNIFQPLWEASLHPSKHPKFHYFLNHVSGFDSVDNEATIDLPFTDV 1071 (1453)
T ss_pred -CCCCCCceEEEecchhhHHHHhcCCcCCHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhCcceEEcCCcccccccCCC
Confidence 11122588999988876432 12334443332 111 1599999999988621
Q ss_pred -h-----------hhHH-------HHHHHHHHc-C---CceeeecCCCCChhHHHHHHhcCCCcccccccC--CHHHHHH
Q 024296 204 -W-----------TTFL-------PALKFAREQ-G---LQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRK 258 (269)
Q Consensus 204 -~-----------~~f~-------~~f~~ar~~-g---l~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~~~l~~~ 258 (269)
| .-|+ ..+...|+. | +.++.||||.+++++|++|+ ++++|||||+.+ +|.++.+
T Consensus 1072 ~P~~W~~~~NPpy~Yy~YY~yaNi~~LN~~R~~rglnTf~~rpHAGEag~~~hI~~Al-L~a~RIgHGi~l~~dp~L~yl 1150 (1453)
T PTZ00310 1072 SPWAWTSVENPPYNYYLYYLYANIRTLNEFRASRGFSTFALRPHCGESGSMDHLYGAF-LCANSICHGINLRNDPPMQYL 1150 (1453)
T ss_pred ChhhccCCCCCchhHhHHHHHHHHHHHHHHHHHCCCCCcCccccCCCCCCHHHHHHHH-hCCccccchhhhCcCHHHHHH
Confidence 1 1111 123333432 4 78999999999999999999 899999999987 6899999
Q ss_pred HHhCCCceeeC
Q 024296 259 LKSSKIPVRIS 269 (269)
Q Consensus 259 l~~~~I~lEic 269 (269)
+..++|+||||
T Consensus 1151 ~~l~qI~LevC 1161 (1453)
T PTZ00310 1151 YYLAQIGLHVS 1161 (1453)
T ss_pred HHHcCCeEEEC
Confidence 99999999999
No 17
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=99.51 E-value=1.4e-12 Score=121.19 Aligned_cols=163 Identities=10% Similarity=0.078 Sum_probs=120.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccc
Q 024296 69 TDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMND 148 (269)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (269)
-++++++..+++.+.++.+.||.|+|.+.. .+++.+..++ +.++++++.+
T Consensus 85 ~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~------~~~~~~~~~~-~~~a~~~~~~----------------------- 134 (371)
T cd01296 85 ASEDELFASALRRLARMLRHGTTTVEVKSG------YGLDLETELK-MLRVIRRLKE----------------------- 134 (371)
T ss_pred CCHHHHHHHHHHHHHHHHHCCceEEEeccc------CCCCHHHHHH-HHHHHHHHHh-----------------------
Confidence 357889999999999999999999998732 2455555454 6677766533
Q ss_pred cccCCCCCCceEEEEEEEe-CCCCHH-------HHHHHHHHHHh-h-CCCceEEEecCCCCCCCChhhHHHHHHHHHHcC
Q 024296 149 ACNGTRGKKIYVRLLLSID-RRETTE-------AAMETVKLALE-M-RDLGVVGIDLSGNPTKGEWTTFLPALKFAREQG 218 (269)
Q Consensus 149 ~~~~~~~~~i~~rli~~~~-R~~~~~-------~~~~~~~~a~~-~-~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~g 218 (269)
+.++ .++.++. |...++ ......+...+ + ....+.|+|+.|.+...+.+.+..+++.|++.|
T Consensus 135 ------~~~~--~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g 206 (371)
T cd01296 135 ------EGPV--DLVSTFLGAHAVPPEYKGREEYIDLVIEEVLPAVAEENLADFCDVFCEKGAFSLEQSRRILEAAKEAG 206 (371)
T ss_pred ------hCCC--ceEeeeeecccCCcccCChHHHHHHHHHHHHHHHHHhCCCCEEEEeecCCccCHHHHHHHHHHHHHCC
Confidence 1233 3444554 333221 11111222222 1 135689999998887777888999999999999
Q ss_pred CceeeecCCCCChhHHHHHHhcCCCcccccccCCHHHHHHHHhCCCceeeC
Q 024296 219 LQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 219 l~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~~~~l~~~l~~~~I~lEic 269 (269)
+++++|++|..++..+..++.+|..+|+||+.++++.++++++.++.+.+|
T Consensus 207 ~~v~~H~~e~~~~~~~~~~~~~g~~~i~H~~~~~~~~i~~la~~g~~v~~~ 257 (371)
T cd01296 207 LPVKIHADELSNIGGAELAAELGALSADHLEHTSDEGIAALAEAGTVAVLL 257 (371)
T ss_pred CeEEEEEcCcCCCCHHHHHHHcCCCeeHHhcCCCHHHHHHHHHcCCeEEEC
Confidence 999999999877777777777899999999999999999999999999887
No 18
>PRK09230 cytosine deaminase; Provisional
Probab=99.27 E-value=1.4e-10 Score=110.27 Aligned_cols=165 Identities=14% Similarity=0.120 Sum_probs=112.5
Q ss_pred hhCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccc
Q 024296 67 LTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM 146 (269)
Q Consensus 67 l~~~~~~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (269)
...++++++..++..++++...|+.|+|.+++|... + ...++++.++.++++
T Consensus 93 ~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~---~---~~~~~a~~~~~~~~~---------------------- 144 (426)
T PRK09230 93 ALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDP---T---LTALKAMLEVKEEVA---------------------- 144 (426)
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCc---c---hhHHHHHHHHHHHhh----------------------
Confidence 345789999999999999999999999999987321 1 144677777776553
Q ss_pred cccccCCCCCCceEEEEEEEeCC--CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeee
Q 024296 147 NDACNGTRGKKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (269)
Q Consensus 147 ~~~~~~~~~~~i~~rli~~~~R~--~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~H 224 (269)
...++.++ ++.+. .+.+...+.++.+.++..+.+.|++.+..+...+++.+..+|+.|++.|+++++|
T Consensus 145 -------~~~~~~i~---a~~~~~~~~~~~~~~~l~~a~~~~~~~vg~~p~~~~~~~~~~e~l~~~~~~A~~~g~~~~~H 214 (426)
T PRK09230 145 -------PWVDLQIV---AFPQEGILSYPNGEALLEEALRLGADVVGAIPHFEFTREYGVESLHKAFALAQKYDRLIDVH 214 (426)
T ss_pred -------CcceEEEE---eccCccccCCccHHHHHHHHHHcCCCEEeCCCCccccchhHHHHHHHHHHHHHHhCCCcEEE
Confidence 22333333 33332 2222345667777776554455555555454445678999999999999999999
Q ss_pred cCCCCChhH--HHHHHh-cCCCcc------cccccC-------CHHHHHHHHhCCCceeeC
Q 024296 225 CGEIPNKEE--IQSMLD-FLPQRI------GHACCF-------EEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 225 AGE~~~~e~--i~~ai~-l~a~RI------GHG~~~-------~~~l~~~l~~~~I~lEic 269 (269)
++|..++.. +..+++ +...++ +|++.+ .++.+++|+++|+.+..|
T Consensus 215 ~~E~~~~~~~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~vv~c 275 (426)
T PRK09230 215 CDEIDDEQSRFVETVAALAHREGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVAN 275 (426)
T ss_pred ECCCCCcchHHHHHHHHHHHHhCCCCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeEEEC
Confidence 999876543 333333 222334 566666 367999999999999887
No 19
>PRK09356 imidazolonepropionase; Validated
Probab=98.91 E-value=2.5e-07 Score=87.14 Aligned_cols=165 Identities=9% Similarity=0.073 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccc
Q 024296 69 TDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMND 148 (269)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (269)
.+++++...+...+.++.+.||.+++.+... +++.+... .+.++++.+.
T Consensus 113 ~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~~------~~~~~~~~-~~~~~~~~~~------------------------ 161 (406)
T PRK09356 113 ASEEELFAQALPRLDALLAEGVTTVEIKSGY------GLDLETEL-KMLRVARRLG------------------------ 161 (406)
T ss_pred CCHHHHHHHHHHHHHHHHhcCceEEEeeccC------CCCHHHHH-HHHHHHHHHh------------------------
Confidence 4677888888999999999999999866421 23433322 2344444332
Q ss_pred cccCCCCCCceEEEEEEEeCCCC------HH-HHHHHHHHHHhh--CCCceEEEecCCCCCCCChhhHHHHHHHHHHcCC
Q 024296 149 ACNGTRGKKIYVRLLLSIDRRET------TE-AAMETVKLALEM--RDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL 219 (269)
Q Consensus 149 ~~~~~~~~~i~~rli~~~~R~~~------~~-~~~~~~~~a~~~--~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl 219 (269)
.+.++.+...+...+.++ ++ ......+.+.+. ....+.+++..+.+...+++.+..+++.|++.|+
T Consensus 162 -----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~A~~~g~ 236 (406)
T PRK09356 162 -----EEHPVDVVTTFLGAHAVPPEYKGRPDAYIDLVCEEMLPAVAEEGLADAVDVFCETGAFSVEQSERVLEAAKALGL 236 (406)
T ss_pred -----hhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHhHHHHhcCCcceEEEEecCCCCCHHHHHHHHHHHHHCCC
Confidence 122333322222111111 11 111111111111 1234666666565656677889999999999999
Q ss_pred ceeeecCCCCChhHHHHHHhcCCCcccccccCCHHHHHHHHhCCCceeeC
Q 024296 220 QITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 220 ~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~~~~l~~~l~~~~I~lEic 269 (269)
++.+|+.|..+...+..+.+++..++.|++.++++.++++++.++.+.+|
T Consensus 237 ~v~~H~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~la~~g~~~~~~ 286 (406)
T PRK09356 237 PVKIHAEQLSNLGGAELAAEYGALSADHLEYLDEAGIAAMAEAGTVAVLL 286 (406)
T ss_pred CEEEEEecccCCCHHHHHHHcCCcEehHhhcCCHHHHHHHHHhCCEEEEC
Confidence 99999999766555666667889999999999999999999999998877
No 20
>PTZ00310 AMP deaminase; Provisional
Probab=98.85 E-value=1.6e-07 Score=98.23 Aligned_cols=50 Identities=16% Similarity=0.077 Sum_probs=41.7
Q ss_pred CceeeecCCCCChhHHHHHHhcCCCcccccccC--CHHHHHHHHhCCCceeeC
Q 024296 219 LQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 219 l~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~~~l~~~l~~~~I~lEic 269 (269)
+.+-.|+||.+.++++..+.. -++|||||+.+ +|.+..++.+++|+||||
T Consensus 480 f~LRPhcgeag~~dhLv~~fL-ladRI~HGi~l~d~p~LqyL~~e~qI~LeVC 531 (1453)
T PTZ00310 480 LQLRPSGEKAPAYDQLISSYL-LGDVITRATSIADYPVLQYLCGLHRVGLTVS 531 (1453)
T ss_pred EEecCCCCCCCCHHHHHHHHH-hhccccchhccCchHHHHHHHHHcCCeEEEC
Confidence 677889999999998887655 47999999987 456666666999999999
No 21
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=98.81 E-value=3.6e-07 Score=79.51 Aligned_cols=167 Identities=22% Similarity=0.290 Sum_probs=114.0
Q ss_pred hhCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccc
Q 024296 67 LTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM 146 (269)
Q Consensus 67 l~~~~~~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (269)
-..++++++......++++.+.||.++....++..... + .+.++.+.+..++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~---~-~~~~~~~~~~~~~~----------------------- 78 (275)
T cd01292 26 EELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTT---T-KAAIEAVAEAARAS----------------------- 78 (275)
T ss_pred cccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccc---c-chHHHHHHHHHHHh-----------------------
Confidence 45577888999999999999999999998876543211 1 23344555554321
Q ss_pred cccccCCCCCCceEEEEEEEeCCCCH---HHHHHHHHHHHhhCCCceEEEecCCCCCCC--ChhhHHHHHHHHHHcCCce
Q 024296 147 NDACNGTRGKKIYVRLLLSIDRRETT---EAAMETVKLALEMRDLGVVGIDLSGNPTKG--EWTTFLPALKFAREQGLQI 221 (269)
Q Consensus 147 ~~~~~~~~~~~i~~rli~~~~R~~~~---~~~~~~~~~a~~~~~~~vvGidl~G~E~~~--~~~~f~~~f~~ar~~gl~~ 221 (269)
.++.+.+..++.+..+. .......+........+++|+++.+.+... +.+.+.++++.|++.|+++
T Consensus 79 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i 149 (275)
T cd01292 79 ---------AGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGLKLAGPYTATGLSDESLRRVLEEARKLGLPV 149 (275)
T ss_pred ---------cCeeeEEeccCCCCccccchhHHHHHHHHHHHHHhcCCeeEeeCCCCCCCCCCcHHHHHHHHHHHHcCCeE
Confidence 15555555555543321 111112222222222479999999887653 6688999999999999999
Q ss_pred eeecCCCCCh-hHHHHHHhc----CCCcccccccCCHHHHHHHHhCCCceeeC
Q 024296 222 TLHCGEIPNK-EEIQSMLDF----LPQRIGHACCFEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 222 t~HAGE~~~~-e~i~~ai~l----~a~RIGHG~~~~~~l~~~l~~~~I~lEic 269 (269)
++|++|...+ ..+.++++. +...|+|+...+++.++.++++++.+++|
T Consensus 150 ~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~ 202 (275)
T cd01292 150 VIHAGELPDPTRALEDLVALLRLGGRVVIGHVSHLDPELLELLKEAGVSLEVC 202 (275)
T ss_pred EEeeCCcccCccCHHHHHHHHhcCCCEEEECCccCCHHHHHHHHHcCCeEEEC
Confidence 9999997642 234444432 57889999999999999999999999987
No 22
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=98.76 E-value=7e-07 Score=83.65 Aligned_cols=170 Identities=18% Similarity=0.105 Sum_probs=101.7
Q ss_pred CHHHHHHHhHHHHHhhCCHHHHHHHHHHHHHHHHhcCCeE-EEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhcccccc
Q 024296 53 SLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVY-LELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFA 131 (269)
Q Consensus 53 ~l~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~dnV~Y-~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~ 131 (269)
++.+|++.+........++++++..+...+.++.+.||.. .+....+. +...++.++
T Consensus 78 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-------------~~~~~~~~~--------- 135 (411)
T cd01298 78 PLMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMYFFYP-------------DAVAEAAEE--------- 135 (411)
T ss_pred CHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECccccch-------------HHHHHHHHH---------
Confidence 3566666654444455678899999999999999999964 44432221 122222221
Q ss_pred ccccccccccccccccccccCCCCCCceEEEEEEEeCCCC------HHHHHHHHHHHHhhC---CCc-eEEEecCCCCCC
Q 024296 132 SRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRET------TEAAMETVKLALEMR---DLG-VVGIDLSGNPTK 201 (269)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~~~R~~~------~~~~~~~~~~a~~~~---~~~-vvGidl~G~E~~ 201 (269)
.|+.+.+..++.+... .+...+..+...++. .+. .+++++.+.+ .
T Consensus 136 ------------------------~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~-~ 190 (411)
T cd01298 136 ------------------------LGIRAVLGRGIMDLGTEDVEETEEALAEAERLIREWHGAADGRIRVALAPHAPY-T 190 (411)
T ss_pred ------------------------hCCeEEEEcceecCCCcccccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCc-c
Confidence 1333333333333221 112223333332322 222 3455544332 2
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCCCCChh----------HHHHHHhcC---C-CcccccccCCHHHHHHHHhCCCcee
Q 024296 202 GEWTTFLPALKFAREQGLQITLHCGEIPNKE----------EIQSMLDFL---P-QRIGHACCFEEEEWRKLKSSKIPVR 267 (269)
Q Consensus 202 ~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e----------~i~~ai~l~---a-~RIGHG~~~~~~l~~~l~~~~I~lE 267 (269)
.+++.+..+++.|++.|+++++|++|..... .+.-+...+ + .+|.||+.++++.++++++++|.++
T Consensus 191 ~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~l~~~~~~~l~~~gi~~~ 270 (411)
T cd01298 191 CSDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRPVEYLEELGLLGPDVVLAHCVWLTDEEIELLAETGTGVA 270 (411)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEE
Confidence 4568899999999999999999999875321 111122222 2 2789999999999999999999998
Q ss_pred eC
Q 024296 268 IS 269 (269)
Q Consensus 268 ic 269 (269)
+|
T Consensus 271 ~~ 272 (411)
T cd01298 271 HN 272 (411)
T ss_pred EC
Confidence 87
No 23
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=98.75 E-value=5.5e-07 Score=85.61 Aligned_cols=170 Identities=12% Similarity=0.064 Sum_probs=98.4
Q ss_pred CHHHHHHHhHHHHHhhCCHHHHHHHHHHHHHHHHhcCC-eEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhcccccc
Q 024296 53 SLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENI-VYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFA 131 (269)
Q Consensus 53 ~l~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~dnV-~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~ 131 (269)
++.+|++.|.+......++++++..++..+.++.+.|+ -++|..+.| +.+.++..+
T Consensus 76 ~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~--------------~~~~~a~~~--------- 132 (424)
T PRK08393 76 PLMEWLQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMYFHM--------------EEVAKATLE--------- 132 (424)
T ss_pred CHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCceEEeccccCH--------------HHHHHHHHH---------
Confidence 56666665533232334677888999999999999999 667765322 233333322
Q ss_pred ccccccccccccccccccccCCCCCCceEEEEEEEeCCCCHHHHHHHHHHHHh----hC--CCceEEEecCC-CCCCCCh
Q 024296 132 SRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALE----MR--DLGVVGIDLSG-NPTKGEW 204 (269)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~~~R~~~~~~~~~~~~~a~~----~~--~~~vvGidl~G-~E~~~~~ 204 (269)
.|+...+.+.+.+..++....+.++.+.+ +. ....+...++- .+..-++
T Consensus 133 ------------------------~G~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~ 188 (424)
T PRK08393 133 ------------------------VGLRGYLSYGMVDLGDEEKREKEIKETEKLMEFIEKLNSPRVHFVFGPHAPYTCSL 188 (424)
T ss_pred ------------------------hCCeEEEeceEecCCCccchHHHHHHHHHHHHHHhcCCCCceEEEEeCCcCCcCCH
Confidence 23333333333222222221222222221 11 12222322221 1222345
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCCh----------hHHHHHHh---cCCCc-ccccccCCHHHHHHHHhCCCceeeC
Q 024296 205 TTFLPALKFAREQGLQITLHCGEIPNK----------EEIQSMLD---FLPQR-IGHACCFEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 205 ~~f~~~f~~ar~~gl~~t~HAGE~~~~----------e~i~~ai~---l~a~R-IGHG~~~~~~l~~~l~~~~I~lEic 269 (269)
+.+..+++.|++.|+++++|++|.... ..+.-+.. +++++ ++||+.++++.+++|+++|+.+..|
T Consensus 189 ~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~g~~v~~~ 267 (424)
T PRK08393 189 ALLKWVREKAREWNKLITIHLSETMDEIKQIREKYGKSPVVLLDEIGFLNEDVIAAHGVWLSSRDIRILASAGVTVAHN 267 (424)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCcCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHhcCCEEEEC
Confidence 778899999999999999999997521 11221222 35544 8999999999999999999998877
No 24
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=98.53 E-value=7.7e-06 Score=72.65 Aligned_cols=63 Identities=21% Similarity=0.424 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCceeeecCCCCC---hhHHHHHHhcCCCcccccccCCHHHHHHHHhCCCceeeC
Q 024296 207 FLPALKFAREQGLQITLHCGEIPN---KEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 207 f~~~f~~ar~~gl~~t~HAGE~~~---~e~i~~ai~l~a~RIGHG~~~~~~l~~~l~~~~I~lEic 269 (269)
+..+++.|++.|+++++|++|... ...+..++++++++|+|++.++++.+++|+++|+.+.+|
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~~~g~~~i~~~~~~~~~~i~H~~~l~~~~~~~la~~g~~v~~~ 192 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRESVGMTDIERALDLEPDLLVHGTHLTDEDLELVRENGVPVVLC 192 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCCCCCchhHHHHHhCCCCEEEEcCCCCHHHHHHHHHcCCcEEEC
Confidence 899999999999999999999864 235777777899999999999999999999999999887
No 25
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=98.47 E-value=3.6e-06 Score=78.43 Aligned_cols=164 Identities=16% Similarity=0.139 Sum_probs=100.1
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccc
Q 024296 68 TTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMN 147 (269)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (269)
..++++++..+...+.++.+.||.+++..+++... .+. ..++.+.+..++..
T Consensus 88 ~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~--~~~---~~~~~~~~~~~~~~----------------------- 139 (398)
T cd01293 88 LLTAEDVKERAERALELAIAHGTTAIRTHVDVDPA--AGL---KALEALLELREEWA----------------------- 139 (398)
T ss_pred ccChHHHHHHHHHHHHHHHHcChhheeeeeccccc--ccc---hHHHHHHHHHHHhh-----------------------
Confidence 45788999999999999999999999877664321 111 12333333322211
Q ss_pred ccccCCCCCCceEEEEEEEeCC--CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeec
Q 024296 148 DACNGTRGKKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 225 (269)
Q Consensus 148 ~~~~~~~~~~i~~rli~~~~R~--~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HA 225 (269)
..+... +.++.+. ...+.+.+.++.+.+...+.+.|++..+. ...+++.+..+++.|++.|+++++|+
T Consensus 140 --------~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~-~~~s~e~l~~~~~~A~~~g~~v~~H~ 209 (398)
T cd01293 140 --------DLIDLQ-IVAFPQHGLLSTPGGEELMREALKMGADVVGGIPPAEI-DEDGEESLDTLFELAQEHGLDIDLHL 209 (398)
T ss_pred --------ccceEE-EEeccCccccCCCCHHHHHHHHHHhCCCEEeCCCCCcC-CccHHHHHHHHHHHHHHhCCCCEEEe
Confidence 011111 1122221 11134556666666543333334444431 22345789999999999999999999
Q ss_pred CCCCCh--hHHH----HHHhcCC---CcccccccCC-------HHHHHHHHhCCCceeeC
Q 024296 226 GEIPNK--EEIQ----SMLDFLP---QRIGHACCFE-------EEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 226 GE~~~~--e~i~----~ai~l~a---~RIGHG~~~~-------~~l~~~l~~~~I~lEic 269 (269)
+|.... ..+. .+.+.|. ..|.||+.++ ++++++|+++++.+..|
T Consensus 210 ~e~~~~~~~~~~~~~~~~~~~g~~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~ 269 (398)
T cd01293 210 DETDDPGSRTLEELAEEAERRGMQGRVTCSHATALGSLPEAEVSRLADLLAEAGISVVSL 269 (398)
T ss_pred CCCCCcchhHHHHHHHHHHHhCCCCCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEEeC
Confidence 997643 2232 2333454 4679998764 25799999999999876
No 26
>PRK07583 cytosine deaminase-like protein; Validated
Probab=98.14 E-value=9.2e-05 Score=70.78 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=50.9
Q ss_pred hhhHHHHHHHHHHcCCceeeecCCCCChhH--H---H-HHHhc---CCCcccccccCC-------HHHHHHHHhCCCcee
Q 024296 204 WTTFLPALKFAREQGLQITLHCGEIPNKEE--I---Q-SMLDF---LPQRIGHACCFE-------EEEWRKLKSSKIPVR 267 (269)
Q Consensus 204 ~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~--i---~-~ai~l---~a~RIGHG~~~~-------~~l~~~l~~~~I~lE 267 (269)
.+.+.++|+.|++.|+++.+|++|...+.. + . .+... +.-+++|++.+. ++++++|++.|+.+-
T Consensus 211 d~~l~~i~~lA~~~G~~v~vH~~E~~~~~~~~l~~~~~~~~~~G~~~~v~i~H~~~l~~~~~~~~~~~i~~la~~gv~vv 290 (438)
T PRK07583 211 DAQLDRLFRLARERGLDLDLHVDETGDPASRTLKAVAEAALRNGFEGKVTCGHCCSLAVQPEEQAQATIALVAEAGIAIV 290 (438)
T ss_pred HHHHHHHHHHHHHhCCCcEEeECCCCCchHHHHHHHHHHHHHhCCCCCEEEEeccchhcCCHHHHHHHHHHHHHcCCeEE
Confidence 367889999999999999999999765421 2 2 23333 466899998763 368999999999988
Q ss_pred eC
Q 024296 268 IS 269 (269)
Q Consensus 268 ic 269 (269)
.|
T Consensus 291 ~~ 292 (438)
T PRK07583 291 SL 292 (438)
T ss_pred EC
Confidence 76
No 27
>PRK08204 hypothetical protein; Provisional
Probab=97.91 E-value=0.00086 Score=64.08 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=57.7
Q ss_pred EEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCC---ChhHHHHHHhcCC----CcccccccCCHHHHHHHHhCC
Q 024296 191 VGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIP---NKEEIQSMLDFLP----QRIGHACCFEEEEWRKLKSSK 263 (269)
Q Consensus 191 vGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~---~~e~i~~ai~l~a----~RIGHG~~~~~~l~~~l~~~~ 263 (269)
.|+...+.. ..+++.+..+++.|++.|+++.+|+.|.. +...+..+.+.|. ..|.|++.++++.+++|++++
T Consensus 188 ~~~~~~~~~-~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~l~~~g~~~~~~~i~H~~~~~~~~~~~la~~g 266 (449)
T PRK08204 188 LGLAIRGPE-FSSWEVARADFRLARELGLPISMHQGFGPWGATPRGVEQLHDAGLLGPDLNLVHGNDLSDDELKLLADSG 266 (449)
T ss_pred EEEecCCcc-cCCHHHHHHHHHHHHHcCCcEEEEEcCCCcccCCCHHHHHHHCCCCCCCeEEEecCCCCHHHHHHHHHcC
Confidence 344444432 23456788899999999999999998863 3334444444553 369999999999999999999
Q ss_pred CceeeC
Q 024296 264 IPVRIS 269 (269)
Q Consensus 264 I~lEic 269 (269)
+.+-.|
T Consensus 267 ~~v~~~ 272 (449)
T PRK08204 267 GSFSVT 272 (449)
T ss_pred CCEEEC
Confidence 998776
No 28
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=97.89 E-value=0.00013 Score=66.96 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCC--CC------CCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCC
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSG--NP------TKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP 242 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G--~E------~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a 242 (269)
+++++.+.++...+...+.|.-+--.+ .. ...+++.+..+++.|++.|+++++|+.+ ...+..+++.|.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~---~~~i~~~l~~G~ 194 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYG---AEAIRRAIRAGV 194 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCC
Confidence 467777777766665444444331111 11 0234577899999999999999999975 466788889999
Q ss_pred CcccccccCCHHHHHHHHhCCCceeeC
Q 024296 243 QRIGHACCFEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 243 ~RIGHG~~~~~~l~~~l~~~~I~lEic 269 (269)
++|.||..++++.+++|+++++.+..|
T Consensus 195 ~~i~H~~~~~~~~~~~l~~~g~~~~~t 221 (342)
T cd01299 195 DTIEHGFLIDDETIELMKEKGIFLVPT 221 (342)
T ss_pred CEEeecCCCCHHHHHHHHHCCcEEeCc
Confidence 999999999999999999999988765
No 29
>PRK14085 imidazolonepropionase; Provisional
Probab=97.86 E-value=4.8e-05 Score=71.35 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=65.9
Q ss_pred EecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccccCCHHHHHHHHhCCCceeeC
Q 024296 193 IDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 193 idl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~~~~l~~~l~~~~I~lEic 269 (269)
+|+...+...+++.+..+++.|++.|+++++|+++......+..++++|+.+|.|++.++++.++++++.++.+.+|
T Consensus 195 idi~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~v~~~~~~g~~~i~H~~~l~~~~~~~la~~gv~~~~~ 271 (382)
T PRK14085 195 IDVFCERGAFDEDQSRRVLTAGRAAGLGLRVHGNQLGPGPGVRLAVELGAASVDHCTYLTDADVDALAGSGTVATLL 271 (382)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEeCcccCChHHHHHHHcCCCcHHHhCCCCHHHHHHHHHcCCEEEEC
Confidence 45555555566788999999999999999999998765566888888999999999999999999999999987765
No 30
>PRK07213 chlorohydrolase; Provisional
Probab=97.84 E-value=8.8e-05 Score=69.46 Aligned_cols=79 Identities=23% Similarity=0.246 Sum_probs=63.4
Q ss_pred eEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCCh----------hHHHHHHhcCCC--cccccccCCHHHHH
Q 024296 190 VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNK----------EEIQSMLDFLPQ--RIGHACCFEEEEWR 257 (269)
Q Consensus 190 vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~----------e~i~~ai~l~a~--RIGHG~~~~~~l~~ 257 (269)
..|+++.+... .+++.+..+++.|++.|+++++|++|+... ..+..++++|.. .|.||+.++++.++
T Consensus 165 ~~g~~~~~~~~-~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~~~~~G~~~~~i~H~~~~~~~~i~ 243 (375)
T PRK07213 165 SDGIGLSGANE-YSDEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTEIERLINLGFKPDFIVHATHPSNDDLE 243 (375)
T ss_pred ccccccccccc-CCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCChHHHHHhcCCCCCEEEECCCCCHHHHH
Confidence 34566666543 456788899999999999999999997633 235667777766 99999999999999
Q ss_pred HHHhCCCceeeC
Q 024296 258 KLKSSKIPVRIS 269 (269)
Q Consensus 258 ~l~~~~I~lEic 269 (269)
+|+++++.+.+|
T Consensus 244 ~la~~g~~v~~~ 255 (375)
T PRK07213 244 LLKENNIPVVVC 255 (375)
T ss_pred HHHHcCCcEEEC
Confidence 999999998877
No 31
>PRK06886 hypothetical protein; Validated
Probab=97.81 E-value=0.0012 Score=60.95 Aligned_cols=179 Identities=11% Similarity=0.069 Sum_probs=106.4
Q ss_pred CCHHHHHHHhHHHHHhhCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhcccccc
Q 024296 52 RSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFA 131 (269)
Q Consensus 52 ~~l~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~ 131 (269)
.+|.+=++.|.....-+ +.+++++=+...++.+.+.|+.|+-...+- ....|+. -++++.+.-++++.
T Consensus 46 g~l~e~i~~~~~~k~~~-t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdv--d~~~~l~---~~~a~~~~r~~~~~------ 113 (329)
T PRK06886 46 ANLQQKWDLVDEVKRNS-TVEDYYARFSQAIELMISQGVTAFGTFVDI--DPICEDR---AIIAAHKAREVYKH------ 113 (329)
T ss_pred CCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHcCcccEeeeecc--CCCcccc---HHHHHHHHHHHhcC------
Confidence 44555555554444433 556777778999999999999999776643 1112333 25666666555432
Q ss_pred ccccccccccccccccccccCCCCCCceEEEEEEEeCC-CCHHHHHHHHHHHHhhCCCceEEEecCCCCC-CCChhhHHH
Q 024296 132 SRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRR-ETTEAAMETVKLALEMRDLGVVGIDLSGNPT-KGEWTTFLP 209 (269)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~~~R~-~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~-~~~~~~f~~ 209 (269)
.+.+-++..-.-. .++ ...++++.+.+. -+.+-|+.-....+ ..+.+.+..
T Consensus 114 -------------------------~idlq~vafPq~g~~~~-~~~~l~~~al~~-advvGGiP~~~~~~~~~~~e~l~~ 166 (329)
T PRK06886 114 -------------------------DIILKFANQTLKGVIEP-TAKKWFDIGSEM-VDMIGGLPYRDELDYGRGLEAMDI 166 (329)
T ss_pred -------------------------cceEEEEecChhhccCc-cHHHHHHHHHHh-CCEEeCccCCcCCCCCCCHHHHHH
Confidence 2333332210000 011 224666766665 45566663221111 223355778
Q ss_pred HHHHHHHcCCceeeecCCCCChh--HHH----HHHhc---CCCcccccccCCH-------HHHHHHHhCCCceeeC
Q 024296 210 ALKFAREQGLQITLHCGEIPNKE--EIQ----SMLDF---LPQRIGHACCFEE-------EEWRKLKSSKIPVRIS 269 (269)
Q Consensus 210 ~f~~ar~~gl~~t~HAGE~~~~e--~i~----~ai~l---~a~RIGHG~~~~~-------~l~~~l~~~~I~lEic 269 (269)
+|+.|++.|+++.+|..|..++. .+. .+++. |.-=++|++.+.. .++++|++.||.+-.|
T Consensus 167 ~~~lA~~~g~~Id~Hlde~~~~~~~~le~l~~~~~~~Gl~grV~~sH~~~L~~~~~~~~~~~i~~La~agi~Vv~~ 242 (329)
T PRK06886 167 LLDTAKSLGKMVHVHVDQFNTPKEKETEQLCDKTIEHGMQGRVVAIHGISIGAHSKEYRYRLYQKMREADMMVIAC 242 (329)
T ss_pred HHHHHHHcCCCeEEeECCCCchhHHHHHHHHHHHHHcCCCCCEEEEEeccccCcChhhHHHHHHHHHHcCCeEEEC
Confidence 99999999999999999987552 221 23343 3334679987732 3899999999988765
No 32
>KOG1096 consensus Adenosine monophosphate deaminase [Nucleotide transport and metabolism]
Probab=97.79 E-value=0.00012 Score=71.74 Aligned_cols=210 Identities=20% Similarity=0.287 Sum_probs=122.4
Q ss_pred hhcCCcchhccccCCCCCHHHHHHHHHHh-c---------cCC-------------Cccch-hhHHHHh----hcC----
Q 024296 4 FASMPKVELHAHLNGSIRDSTLLELARVL-G---------EKG-------------VIVFS-DVEHVIM----KSD---- 51 (269)
Q Consensus 4 i~~lPK~eLH~HL~Gs~~~~tl~~la~~~-~---------~~g-------------~~~~~-~~~~~~~----~~~---- 51 (269)
+...-|||.|+|+.||++-.-|++..+.. . +.| +..++ +++.|.. ..+
T Consensus 314 FYNvRKVDthih~SaCmnQkhLlrFIk~klr~epdrvV~~~~g~~lTLrevF~~l~L~~yDlsvd~ldvha~~~tfHrfd 393 (768)
T KOG1096|consen 314 FYNVRKVDTHIHASACMNQKHLLRFIKKKLRKEPDRVVIQRDGRKLTLREVFKSLGLTAYDLSVDTLDVHADRNTFHRFD 393 (768)
T ss_pred ccccchhcchhhHhhhcCHHHHHHHHHHHhhcCCceEEEecCCceeeHHHHHHHcCCceeccchhHHHhhhchhhhhccc
Confidence 35677999999999999999888865541 0 111 11111 1222210 011
Q ss_pred --------CCHHHHHHHhHHHHHhhCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhh
Q 024296 52 --------RSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAV 123 (269)
Q Consensus 52 --------~~l~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~ 123 (269)
.+-.+..+.|--....+.. +-+.+++.+++.++-+..-+++|.|.+...+ +.+| ++.+..=+-..
T Consensus 394 kfn~Kynp~g~s~LR~iFLktDNyI~G-eYlAei~Kev~~dleeSKYQ~ae~rlsiygr-----s~~E-W~klA~W~v~~ 466 (768)
T KOG1096|consen 394 KFNAKYNPVGESRLREIFLKTDNYING-EYLAEILKEVLSDLEESKYQLAEPRLSIYGR-----SRDE-WDKLASWLVDN 466 (768)
T ss_pred hhhhhcCCccHHHHHHHHHhhccccch-hhHHHHHHHHHhhHHHhhhhhcceeEEEeee-----CHHH-HHHHHHHHHHc
Confidence 1222333444444444544 3578899999999999999999999987643 4444 22222212111
Q ss_pred hhccccccccccccccccccccccccccCCCCCCceEEEEEEEeCCCCH-------HHHHHHHHHHHh-h-----CC---
Q 024296 124 SAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETT-------EAAMETVKLALE-M-----RD--- 187 (269)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~~~R~~~~-------~~~~~~~~~a~~-~-----~~--- 187 (269)
+=+.-.+|+++-+.|-.+. ..-.+++++.+. . .+
T Consensus 467 ------------------------------~v~S~NvRWlIQipRiydvy~~~g~v~nFqe~L~nIF~PLFeat~~p~~h 516 (768)
T KOG1096|consen 467 ------------------------------KVFSPNVRWLIQIPRLYDVYRKKGIVKNFQEMLDNIFLPLFEATKDPSSH 516 (768)
T ss_pred ------------------------------cccCCCeeEEEecchHhHHHHhcCchhhHHHHHHHHhhhhhhcccCCCcc
Confidence 1122257888888776653 233455555432 0 01
Q ss_pred -------CceEEEecCCCCCCCChhh---------------------H-----HH--HHHHHHHc-C---CceeeecCCC
Q 024296 188 -------LGVVGIDLSGNPTKGEWTT---------------------F-----LP--ALKFAREQ-G---LQITLHCGEI 228 (269)
Q Consensus 188 -------~~vvGidl~G~E~~~~~~~---------------------f-----~~--~f~~ar~~-g---l~~t~HAGE~ 228 (269)
..|+|||++-+|++..+.. | +. .+...|+. | +-+-.|+||.
T Consensus 517 p~Lh~FL~~V~gfDsVdDesk~~~~~Ft~~sp~P~~Wt~~~NPpysyYlYY~YaNl~~LN~lR~~rg~nTf~LRphCgea 596 (768)
T KOG1096|consen 517 PELHVFLQQVSGFDSVDDESKYEWKNFTRKSPKPKEWTAEDNPPYSYYLYYMYANLAKLNHLRRARGQNTFTLRPHCGEA 596 (768)
T ss_pred hHHHHHHHHhcCcccccccccccccccccCCCCchhccccCCCchhhhHHHHHHHHHHHHHHHHHcCCceEEecCCCCCc
Confidence 2599999999988743211 1 11 12233443 4 5566799999
Q ss_pred CChhHHHHHHhcCCCcccccccC
Q 024296 229 PNKEEIQSMLDFLPQRIGHACCF 251 (269)
Q Consensus 229 ~~~e~i~~ai~l~a~RIGHG~~~ 251 (269)
+..+++-.|..+ +.-|.||+.+
T Consensus 597 g~~~hLvsafLl-a~gIshg~Ll 618 (768)
T KOG1096|consen 597 GDIEHLVSAFLL-AHGISHGILL 618 (768)
T ss_pred CCHHHHHHHHHH-hccccchhhh
Confidence 999999887653 2229999876
No 33
>PRK06687 chlorohydrolase; Validated
Probab=97.74 E-value=0.003 Score=59.90 Aligned_cols=67 Identities=21% Similarity=0.363 Sum_probs=50.7
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCCh-hHHH--------HHHh-cC----CCcccccccCCHHHHHHHHhCCCceee
Q 024296 203 EWTTFLPALKFAREQGLQITLHCGEIPNK-EEIQ--------SMLD-FL----PQRIGHACCFEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~~~-e~i~--------~ai~-l~----a~RIGHG~~~~~~l~~~l~~~~I~lEi 268 (269)
+++.+..+++.|++.|+++++|++|.... +.+. +.+. +| ..++.|++.++++.+++++++++.+-.
T Consensus 194 s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~~~~~~~~~la~~g~~v~~ 273 (419)
T PRK06687 194 SRDLLEASLEMAKELNIPLHVHVAETKEESGIILKRYGKRPLAFLEELGYLDHPSVFAHGVELNEREIERLASSQVAIAH 273 (419)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHCcCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEE
Confidence 45778999999999999999999997522 1111 1121 22 256899999999999999999998876
Q ss_pred C
Q 024296 269 S 269 (269)
Q Consensus 269 c 269 (269)
|
T Consensus 274 ~ 274 (419)
T PRK06687 274 N 274 (419)
T ss_pred C
Confidence 6
No 34
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=97.73 E-value=0.012 Score=55.91 Aligned_cols=164 Identities=15% Similarity=0.156 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecCC-CCcccCCC-CHHHHHHHHHHHHHhhhhccccccccccccccccccccc
Q 024296 69 TDHATVTRITQEVVEDFASENIVYLELRTTP-KRNESIGM-SKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM 146 (269)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~dnV~Y~Elr~~p-~~~~~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (269)
-++++++..++..+.++.+.|+-.+.-.+.. ......++ +..+..+++.++..+
T Consensus 84 ~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~~------------------------ 139 (418)
T cd01313 84 LTPEQIEAIARQLYIEMLLAGITAVGEFHYVHHDPDGTPYADPAELAQRVIAAASD------------------------ 139 (418)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEEEeeeeccCCCCCccCChhhhHHHHHHHHHH------------------------
Confidence 4788899999999999999999888764421 11111111 233334555555543
Q ss_pred cccccCCCCCCceEEEEEEE-eCC----CC-----------HHHHHHHHHHHHh-hCC--CceEEEecCCCCCCCChhhH
Q 024296 147 NDACNGTRGKKIYVRLLLSI-DRR----ET-----------TEAAMETVKLALE-MRD--LGVVGIDLSGNPTKGEWTTF 207 (269)
Q Consensus 147 ~~~~~~~~~~~i~~rli~~~-~R~----~~-----------~~~~~~~~~~a~~-~~~--~~vvGidl~G~E~~~~~~~f 207 (269)
.|+.+.+...+ .+. .+ .+...+.++.+.+ +.. ...+|+...+. ...+++.+
T Consensus 140 ---------~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~s~e~l 209 (418)
T cd01313 140 ---------AGIGITLLPVLYARAGFGGPAPNPGQRRFINGYEDFLGLLEKALRAVKEHAAARIGVAPHSL-RAVPAEQL 209 (418)
T ss_pred ---------hCCeEEeeeeEEeccCCCCCCCchhhhhhcccHHHHHHHHHHHhhhhccCCceEEEEccCCC-CCCCHHHH
Confidence 23333322111 111 01 1122233332221 122 23455544443 23456788
Q ss_pred HHHHHHHHHcCCceeeecCCCCChhHHHHH------------Hh---cCC-CcccccccCCHHHHHHHHhCCCceeeC
Q 024296 208 LPALKFAREQGLQITLHCGEIPNKEEIQSM------------LD---FLP-QRIGHACCFEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 208 ~~~f~~ar~~gl~~t~HAGE~~~~e~i~~a------------i~---l~a-~RIGHG~~~~~~l~~~l~~~~I~lEic 269 (269)
..+++.|++ |+++.+|++|... + +..+ .. +++ ..+.|++.++++-+++|++.++.+-+|
T Consensus 210 ~~~~~~a~~-g~~i~~H~~e~~~-e-~~~~~~~~g~~~i~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~ 284 (418)
T cd01313 210 AALAALASE-KAPVHIHLAEQPK-E-VDDCLAAHGRRPVELLLDHGHLDARWCLVHATHLTDNETLLLGRSGAVVGLC 284 (418)
T ss_pred HHHHHHHhc-CCceEEEeCCCHH-H-HHHHHHHcCCCHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHcCCEEEEC
Confidence 899999999 9999999999642 1 2111 11 222 258999999999999999999988776
No 35
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=97.67 E-value=0.008 Score=57.56 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=56.6
Q ss_pred ceEEEecCCC-CCCCChhhHHHHHHHHHHcCCceeeecCCCCCh-hHHHH---------HHhc---CC-CcccccccCCH
Q 024296 189 GVVGIDLSGN-PTKGEWTTFLPALKFAREQGLQITLHCGEIPNK-EEIQS---------MLDF---LP-QRIGHACCFEE 253 (269)
Q Consensus 189 ~vvGidl~G~-E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~-e~i~~---------ai~l---~a-~RIGHG~~~~~ 253 (269)
..+.+.++.. ....+++.+..+++.|++.|+++.+|++|.... +...+ +..+ ++ .+|.|++.+++
T Consensus 197 ~~i~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~~ 276 (451)
T PRK08203 197 AMLRIALAPCSPFSVSRELMRESAALARRLGVRLHTHLAETLDEEAFCLERFGMRPVDYLEDLGWLGPDVWLAHCVHLDD 276 (451)
T ss_pred CeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEeCCCH
Confidence 4555655542 223456788899999999999999999986432 11111 1112 22 25789999999
Q ss_pred HHHHHHHhCCCceeeC
Q 024296 254 EEWRKLKSSKIPVRIS 269 (269)
Q Consensus 254 ~l~~~l~~~~I~lEic 269 (269)
+.+++|+++++.+-+|
T Consensus 277 ~~~~~la~~g~~v~~~ 292 (451)
T PRK08203 277 AEIARLARTGTGVAHC 292 (451)
T ss_pred HHHHHHHhcCCeEEEC
Confidence 9999999999988776
No 36
>PRK09228 guanine deaminase; Provisional
Probab=97.62 E-value=0.011 Score=56.60 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=50.2
Q ss_pred ChhhHHHHHHHHHHc-CCceeeecCCCCCh-hHHH----------HHHh-cC----CCcccccccCCHHHHHHHHhCCCc
Q 024296 203 EWTTFLPALKFAREQ-GLQITLHCGEIPNK-EEIQ----------SMLD-FL----PQRIGHACCFEEEEWRKLKSSKIP 265 (269)
Q Consensus 203 ~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~-e~i~----------~ai~-l~----a~RIGHG~~~~~~l~~~l~~~~I~ 265 (269)
+++.+..+++.|++. |+++.+|.+|+... +.+. +.++ +| -..+.|++.++++.+++|+++++.
T Consensus 209 s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~l~~~G~l~~~~~~~H~~~l~~~~~~~la~~g~~ 288 (433)
T PRK09228 209 TPEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFPEARDYLDVYERYGLLGPRAVFAHCIHLEDRERRRLAETGAA 288 (433)
T ss_pred CHHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcCCCCCHHHHHHHcCCCCCCeEEEeccCCCHHHHHHHHHcCCe
Confidence 356788899999997 99999999997532 1111 1121 22 245789999999999999999999
Q ss_pred eeeC
Q 024296 266 VRIS 269 (269)
Q Consensus 266 lEic 269 (269)
+-+|
T Consensus 289 v~~~ 292 (433)
T PRK09228 289 IAFC 292 (433)
T ss_pred EEEC
Confidence 8876
No 37
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=97.61 E-value=0.012 Score=56.22 Aligned_cols=68 Identities=22% Similarity=0.270 Sum_probs=50.5
Q ss_pred CChhhHHHHHHHHHHcC-CceeeecCCCCCh-hHHH----------HHHh-c---CC-CcccccccCCHHHHHHHHhCCC
Q 024296 202 GEWTTFLPALKFAREQG-LQITLHCGEIPNK-EEIQ----------SMLD-F---LP-QRIGHACCFEEEEWRKLKSSKI 264 (269)
Q Consensus 202 ~~~~~f~~~f~~ar~~g-l~~t~HAGE~~~~-e~i~----------~ai~-l---~a-~RIGHG~~~~~~l~~~l~~~~I 264 (269)
.+.+.+..+++.|++.| +++.+|+.|+... +.+. +.++ + ++ ..+.|++.++++.+++++++++
T Consensus 205 ~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~p~~~l~~~G~l~~~~~l~H~~~l~~~~~~~l~~~g~ 284 (429)
T cd01303 205 CSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDYLDVYDKYGLLTEKTVLAHCVHLSEEEFNLLKERGA 284 (429)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCCHHHHHHHCCCCCCCcEEEeCCCCCHHHHHHHHHcCC
Confidence 35577888999999999 9999999996421 1111 1111 2 22 3589999999999999999999
Q ss_pred ceeeC
Q 024296 265 PVRIS 269 (269)
Q Consensus 265 ~lEic 269 (269)
.+-.|
T Consensus 285 ~v~~~ 289 (429)
T cd01303 285 SVAHC 289 (429)
T ss_pred EEEEC
Confidence 88766
No 38
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=97.61 E-value=0.01 Score=57.12 Aligned_cols=166 Identities=12% Similarity=0.126 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCCc-ccCCCC-HHHHHHHHHHHHHhhhhccccccccccccccccccccc
Q 024296 69 TDHATVTRITQEVVEDFASENIVYLELRTTPKRN-ESIGMS-KRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM 146 (269)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~-~~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (269)
-++++++..++..+.++.+-|+-.+.-.+..... ...+++ ..+..+++.++.++.
T Consensus 93 ~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~----------------------- 149 (455)
T TIGR02022 93 LTPEQLQAIARQLYVEMLEAGFTRVGEFHYLHHAPDGTPYADPAEMAERIAAAAADA----------------------- 149 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEEeeeeecccCCCccccchhhhHHHHHHHHHHh-----------------------
Confidence 4788999999999999999999888765422110 111221 123345665555442
Q ss_pred cccccCCCCCCceEEEEEEE-eCC----C-----------CHHHHHHHHHHHHh-hC--CCceEEEecCCCCCCCChhhH
Q 024296 147 NDACNGTRGKKIYVRLLLSI-DRR----E-----------TTEAAMETVKLALE-MR--DLGVVGIDLSGNPTKGEWTTF 207 (269)
Q Consensus 147 ~~~~~~~~~~~i~~rli~~~-~R~----~-----------~~~~~~~~~~~a~~-~~--~~~vvGidl~G~E~~~~~~~f 207 (269)
|+.+-+...+ ... . .++...+.++...+ +. +...+|+...+... .+++.+
T Consensus 150 ----------G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~s~e~l 218 (455)
T TIGR02022 150 ----------GIGLTLLPVFYAHSGFGGAAPNPGQRRFIHDVERFARLVEVLRRELAAQPAAVLGLAPHSLRA-VTPEQL 218 (455)
T ss_pred ----------CCeEEeeeeeeecCCCCCCCCcccchhhccCHHHHHHHHHHHHHHhccCCceEEEEecCCCCc-CCHHHH
Confidence 3222221111 100 0 12222222222221 11 22355655544433 355677
Q ss_pred HHHHHHHHHcCCceeeecCCCCCh-h---------HHHHHHhc---CC-CcccccccCCHHHHHHHHhCCCceeeC
Q 024296 208 LPALKFAREQGLQITLHCGEIPNK-E---------EIQSMLDF---LP-QRIGHACCFEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 208 ~~~f~~ar~~gl~~t~HAGE~~~~-e---------~i~~ai~l---~a-~RIGHG~~~~~~l~~~l~~~~I~lEic 269 (269)
..+++ +++.|+++++|++|.... + .+.-.-++ ++ -.+.|++.++++-+++|++.++.+-.|
T Consensus 219 ~~~~~-a~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~ 293 (455)
T TIGR02022 219 AAVLQ-ASDRQAPVHIHVAEQQKEVDDCLAWSGRRPVEWLLDHGPVDARWCLVHATHLTDEETALLARSGAVAGLC 293 (455)
T ss_pred HHHHH-HHhCCCceEEEECCChHHHHHHHHHhCCCHHHHHHHcCCCCCCEEEEEeecCCHHHHHHHHHcCCeEEEC
Confidence 77888 889999999999996421 1 11111123 22 248999999999999999999988776
No 39
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=97.61 E-value=0.0067 Score=57.08 Aligned_cols=67 Identities=13% Similarity=0.220 Sum_probs=49.9
Q ss_pred ChhhHHHHHHHHHHc-CCceeeecCCCCCh-hHHH----------HHH-hc---CCCc-ccccccCCHHHHHHHHhCCCc
Q 024296 203 EWTTFLPALKFAREQ-GLQITLHCGEIPNK-EEIQ----------SML-DF---LPQR-IGHACCFEEEEWRKLKSSKIP 265 (269)
Q Consensus 203 ~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~-e~i~----------~ai-~l---~a~R-IGHG~~~~~~l~~~l~~~~I~ 265 (269)
+.+.+..+++.|++. |+++.+|+.|.... +.+. +.+ ++ |++- +.|++.++++.+++++++++.
T Consensus 184 s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~g~lg~~~~~~H~~~~~~~~~~~l~~~g~~ 263 (401)
T TIGR02967 184 SPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHYGLLGRRSVFAHCIHLSDEECQRLAETGAA 263 (401)
T ss_pred cHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHCCCCCCCeEEEecccCCHHHHHHHHHcCCe
Confidence 457788899999998 99999999996532 1111 111 12 3332 599999999999999999998
Q ss_pred eeeC
Q 024296 266 VRIS 269 (269)
Q Consensus 266 lEic 269 (269)
+-.|
T Consensus 264 v~~~ 267 (401)
T TIGR02967 264 IAHC 267 (401)
T ss_pred EEEC
Confidence 8776
No 40
>PRK06380 metal-dependent hydrolase; Provisional
Probab=97.57 E-value=0.009 Score=56.58 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=54.5
Q ss_pred eEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHH-HHhc--------------CC-CcccccccCCH
Q 024296 190 VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQS-MLDF--------------LP-QRIGHACCFEE 253 (269)
Q Consensus 190 vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~-ai~l--------------~a-~RIGHG~~~~~ 253 (269)
..+++..|... .+++.+..+++.|++.|+++.+|+.|.. +.+.+ +... ++ .-+.|++.+++
T Consensus 172 ~~~~~~~~~~~-~s~e~l~~~~~~A~~~g~~v~~H~~e~~--~~~~~~~~~~g~~~ie~~~~~g~l~~~~~~~H~~~l~~ 248 (418)
T PRK06380 172 TPSIGVQGIYV-ANDETYLKAKEIAEKYDTIMHMHLSETR--KEVYDHVKRTGERPVEHLEKIGFLNSKLIAAHCVWATY 248 (418)
T ss_pred EEEEECCCCcc-CCHHHHHHHHHHHHHcCCCEEEEeCCcH--HHHHHHHHHhCCCHHHHHHHCCCCCCCeEEEEeecCCH
Confidence 34555555432 3567899999999999999999999953 22221 1112 22 24689988888
Q ss_pred HHHHHHHhCCCceeeC
Q 024296 254 EEWRKLKSSKIPVRIS 269 (269)
Q Consensus 254 ~l~~~l~~~~I~lEic 269 (269)
+.+++++++++.+-.|
T Consensus 249 ~d~~~la~~g~~v~~~ 264 (418)
T PRK06380 249 HEIKLLSKNGVKVSWN 264 (418)
T ss_pred HHHHHHHHcCCEEEEC
Confidence 8899999999988776
No 41
>PRK05985 cytosine deaminase; Provisional
Probab=97.56 E-value=0.002 Score=60.56 Aligned_cols=165 Identities=13% Similarity=0.153 Sum_probs=91.7
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccc
Q 024296 68 TTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMN 147 (269)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (269)
..+.+++..-+...+.++.+.|+.++=-.++-. ...++. .++++.+..+.++
T Consensus 90 ~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~~~~--~~~~~~---~~~~~~~~~~~~~----------------------- 141 (391)
T PRK05985 90 AASGHPAAERALALARAAAAAGTTAMRSHVDVD--PDAGLR---HLEAVLAARETLR----------------------- 141 (391)
T ss_pred ccchhHHHHHHHHHHHHHHhcCcceEEeeEccC--CCcccc---hHHHHHHHHHHhh-----------------------
Confidence 345667778888889999999999974443311 111111 1334444433321
Q ss_pred ccccCCCCCCceEEEEEEEeCC-CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecC
Q 024296 148 DACNGTRGKKIYVRLLLSIDRR-ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 226 (269)
Q Consensus 148 ~~~~~~~~~~i~~rli~~~~R~-~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAG 226 (269)
..+...++....-. .+.....+.++.+.+...+.+.|++..... ..+.+.+..+++.|++.|+++.+|..
T Consensus 142 --------~~~~~~~v~~~~~g~~~~~~~~~ll~~~l~~g~~~~gg~~p~~~~-~~~~~~l~~~~~~A~~~g~~i~~Hv~ 212 (391)
T PRK05985 142 --------GLIDIQIVAFPQSGVLSRPGTAELLDAALRAGADVVGGLDPAGID-GDPEGQLDIVFGLAERHGVGIDIHLH 212 (391)
T ss_pred --------CcccEEEEeccCccccCCcCHHHHHHHHHHcCCCEEeCCCCCCcC-CCHHHHHHHHHHHHHHhCCCcEEeeC
Confidence 12223322211100 011112345555555433334344322221 12336688899999999999999999
Q ss_pred CCCCh--hHHHHH----HhcCC---CcccccccC---CH----HHHHHHHhCCCceeeC
Q 024296 227 EIPNK--EEIQSM----LDFLP---QRIGHACCF---EE----EEWRKLKSSKIPVRIS 269 (269)
Q Consensus 227 E~~~~--e~i~~a----i~l~a---~RIGHG~~~---~~----~l~~~l~~~~I~lEic 269 (269)
|.... ..+..+ ..+|. -.++|+..+ ++ +++++++++++.+-.|
T Consensus 213 e~~d~~~~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~~ 271 (391)
T PRK05985 213 EPGELGAFQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMTN 271 (391)
T ss_pred CCCCccHHHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEEe
Confidence 98653 223222 23454 489999765 33 5689999999987544
No 42
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=97.55 E-value=0.0062 Score=58.08 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=49.7
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCChh----------HHH--HHHh-cCC-CcccccccCCHHHHHHHHhCCCceee
Q 024296 203 EWTTFLPALKFAREQGLQITLHCGEIPNKE----------EIQ--SMLD-FLP-QRIGHACCFEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e----------~i~--~ai~-l~a-~RIGHG~~~~~~l~~~l~~~~I~lEi 268 (269)
+++.+..+++.|++.|+++.+|+.|..... .+. +.+. +++ -.+.||+.++++.+++|++.|+.+-.
T Consensus 188 s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G~~~i~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~v~~ 267 (430)
T PRK06038 188 SEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYGMCSVNYLDDIGFLGPDVLAAHCVWLSDGDIEILRERGVNVSH 267 (430)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHhcCCEEEE
Confidence 457788899999999999999999964211 111 1111 233 34489999999999999999999877
Q ss_pred C
Q 024296 269 S 269 (269)
Q Consensus 269 c 269 (269)
|
T Consensus 268 ~ 268 (430)
T PRK06038 268 N 268 (430)
T ss_pred C
Confidence 6
No 43
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=97.54 E-value=0.0081 Score=57.50 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=48.7
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCCh----------hHHHHHHhc---CC-CcccccccCCHHHHHHHHhCCCceee
Q 024296 203 EWTTFLPALKFAREQGLQITLHCGEIPNK----------EEIQSMLDF---LP-QRIGHACCFEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~~~----------e~i~~ai~l---~a-~RIGHG~~~~~~l~~~l~~~~I~lEi 268 (269)
+++.+..+.+.|++.|+++++|.+|+... ..+.-.-++ ++ .=+.|++.++++.+++|+++++.+-.
T Consensus 202 s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~la~~g~~v~~ 281 (441)
T TIGR03314 202 SDAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELLNETDTFVVH 281 (441)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHcCCCHHHHHHHCCCCCCCeEEEEEecCCHHHHHHHHHcCCcEEE
Confidence 45667788889999999999999996421 111111123 32 22589999999999999999998876
Q ss_pred C
Q 024296 269 S 269 (269)
Q Consensus 269 c 269 (269)
|
T Consensus 282 c 282 (441)
T TIGR03314 282 N 282 (441)
T ss_pred C
Confidence 6
No 44
>PRK12393 amidohydrolase; Provisional
Probab=97.53 E-value=0.009 Score=57.47 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=54.6
Q ss_pred EecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHh---------------cCC-CcccccccCCHHHH
Q 024296 193 IDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD---------------FLP-QRIGHACCFEEEEW 256 (269)
Q Consensus 193 idl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~---------------l~a-~RIGHG~~~~~~l~ 256 (269)
+-..++....+++.+..+++.|++.|+++.+|++|... .+..++. +++ .++.|++.++++.+
T Consensus 206 ~~~~~~~~~~~~e~l~~~~~~a~~~g~~~~~H~~e~~~--~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~~~d~ 283 (457)
T PRK12393 206 VAPTTPTFSLPPELLREVARAARGMGLRLHSHLSETVD--YVDFCREKYGMTPVQFVAEHDWLGPDVWFAHLVKLDAEEI 283 (457)
T ss_pred EcCCCCCCCcCHHHHHHHHHHHHHcCCeEEEEeCCCHH--HHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCCHHHH
Confidence 33334323445678899999999999999999999642 2222222 222 35899999999999
Q ss_pred HHHHhCCCceeeC
Q 024296 257 RKLKSSKIPVRIS 269 (269)
Q Consensus 257 ~~l~~~~I~lEic 269 (269)
+++++.++.+-.|
T Consensus 284 ~~la~~g~~v~~~ 296 (457)
T PRK12393 284 ALLAQTGTGIAHC 296 (457)
T ss_pred HHHHHcCCeEEEC
Confidence 9999999998877
No 45
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=97.40 E-value=0.021 Score=54.86 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=54.1
Q ss_pred eEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCCh-hHH--------HHHH-h---cCC-CcccccccCCHHH
Q 024296 190 VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNK-EEI--------QSML-D---FLP-QRIGHACCFEEEE 255 (269)
Q Consensus 190 vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~-e~i--------~~ai-~---l~a-~RIGHG~~~~~~l 255 (269)
-+|+...+.. ..+++.+..+++.| +.|+++.+|++|.... ..+ .+.+ + +++ .++.|++.++++-
T Consensus 202 ~~~~~p~~~~-~~s~e~l~~~~~~A-~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~l~H~~~l~~~d 279 (456)
T PRK09229 202 RLGLAPHSLR-AVTPDQLAAVLALA-APDGPVHIHIAEQTKEVDDCLAWSGARPVEWLLDHAPVDARWCLVHATHLTDAE 279 (456)
T ss_pred EEEEeCCCCC-CCCHHHHHHHHHHh-cCCCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCeEEEeeccCCHHH
Confidence 3445444433 23567888899999 9999999999986311 000 1111 1 233 3789999999999
Q ss_pred HHHHHhCCCceeeC
Q 024296 256 WRKLKSSKIPVRIS 269 (269)
Q Consensus 256 ~~~l~~~~I~lEic 269 (269)
+++|++.++.+-+|
T Consensus 280 ~~~la~~g~~v~~~ 293 (456)
T PRK09229 280 TARLARSGAVAGLC 293 (456)
T ss_pred HHHHHHcCCeEEEC
Confidence 99999999988776
No 46
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=97.25 E-value=0.029 Score=53.63 Aligned_cols=67 Identities=19% Similarity=0.149 Sum_probs=48.6
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCCh-hHHH--------HHH-h---cCC-CcccccccCCHHHHHHHHhCCCceee
Q 024296 203 EWTTFLPALKFAREQGLQITLHCGEIPNK-EEIQ--------SML-D---FLP-QRIGHACCFEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~~~-e~i~--------~ai-~---l~a-~RIGHG~~~~~~l~~~l~~~~I~lEi 268 (269)
+++.+..+++.|++.|+++.+|.+|+... +.+. +.+ + +++ .=+.|++.++++.+++|+++|+.+-.
T Consensus 203 s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~g~~~v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~g~~v~~ 282 (442)
T PRK07203 203 SDATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKYGKDIVERLADFGLLGEKTLAAHCIYLSDEEIDLLKETDTFVVH 282 (442)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHcCCCHHHHHHhCCCCCCCcEEEEeecCCHHHHHHHHhcCCeEEE
Confidence 34668889999999999999999996532 1111 111 1 232 22579999999889999999998876
Q ss_pred C
Q 024296 269 S 269 (269)
Q Consensus 269 c 269 (269)
|
T Consensus 283 ~ 283 (442)
T PRK07203 283 N 283 (442)
T ss_pred C
Confidence 6
No 47
>PRK07572 cytosine deaminase; Validated
Probab=97.23 E-value=0.0083 Score=57.12 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChh--HH----HHHHhcCCCcc---cccccCC-------HHHHHHHHhCCCceee
Q 024296 205 TTFLPALKFAREQGLQITLHCGEIPNKE--EI----QSMLDFLPQRI---GHACCFE-------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 205 ~~f~~~f~~ar~~gl~~t~HAGE~~~~e--~i----~~ai~l~a~RI---GHG~~~~-------~~l~~~l~~~~I~lEi 268 (269)
+....+++.|++.|+++.+|+.|...+. .+ ..+.++|..-+ +|++.++ ++.+++|+++++.+-.
T Consensus 191 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~G~~~~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv~ 270 (426)
T PRK07572 191 ESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETLAAETQRLGLQGRVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAIA 270 (426)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHHHHHHHHhCCCCCEEEEccchhhcCCHHHHHHHHHHHHHcCCeEEE
Confidence 5677789999999999999999976531 11 12223455333 8998753 3689999999998865
Q ss_pred C
Q 024296 269 S 269 (269)
Q Consensus 269 c 269 (269)
|
T Consensus 271 ~ 271 (426)
T PRK07572 271 N 271 (426)
T ss_pred C
Confidence 5
No 48
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=97.15 E-value=0.058 Score=51.58 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=49.6
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCCh-h---------HHHHHHhc---C-CCcccccccCCHHHHHHHHhCCCceee
Q 024296 203 EWTTFLPALKFAREQGLQITLHCGEIPNK-E---------EIQSMLDF---L-PQRIGHACCFEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~~~-e---------~i~~ai~l---~-a~RIGHG~~~~~~l~~~l~~~~I~lEi 268 (269)
+++.+..+++.|++.|+++.+|+.|.... + .+.-.-++ + ..-+.|++.++++-+++|+++++.+-.
T Consensus 195 s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g~~~~~~l~~~Gll~~~~~~~H~~~l~~~d~~~la~~g~~v~~ 274 (435)
T PRK15493 195 STELLEECARIAVENQTMVHIHLSETEREVRDIEAQYGKRPVEYAASCGLFKRPTVIAHGVVLNDNERAFLAEHDVRVAH 274 (435)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHHcCCeEEE
Confidence 45778899999999999999999996321 1 11111112 2 235799999999889999999998876
Q ss_pred C
Q 024296 269 S 269 (269)
Q Consensus 269 c 269 (269)
|
T Consensus 275 ~ 275 (435)
T PRK15493 275 N 275 (435)
T ss_pred C
Confidence 6
No 49
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=97.11 E-value=0.073 Score=50.03 Aligned_cols=68 Identities=18% Similarity=0.120 Sum_probs=51.1
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCCCCCh-hHH--------------------------HHHHh----cCC-Ccccccc
Q 024296 202 GEWTTFLPALKFAREQGLQITLHCGEIPNK-EEI--------------------------QSMLD----FLP-QRIGHAC 249 (269)
Q Consensus 202 ~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~-e~i--------------------------~~ai~----l~a-~RIGHG~ 249 (269)
.+++.+..+++.|++.|+++++|..|+... +.+ .+.++ +++ ..+.|++
T Consensus 160 ~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv~~l~~~g~L~~~~~~~H~~ 239 (381)
T cd01312 160 VHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFLDMLGGLGTRVSFVHCV 239 (381)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCHHHHHHHcCCCCCCcEEEECC
Confidence 345778889999999999999999996321 100 11222 333 5689999
Q ss_pred cCCHHHHHHHHhCCCceeeC
Q 024296 250 CFEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 250 ~~~~~l~~~l~~~~I~lEic 269 (269)
.++++.+++|+++++.+-.|
T Consensus 240 ~l~~~~~~~l~~~g~~v~~~ 259 (381)
T cd01312 240 YANLEEAEILASRGASIALC 259 (381)
T ss_pred cCCHHHHHHHHHcCCeEEEC
Confidence 99999999999999998776
No 50
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=96.87 E-value=0.13 Score=49.16 Aligned_cols=67 Identities=21% Similarity=0.232 Sum_probs=49.8
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCCh-hHHHHH--------H-hc---C-CCcccccccCCHHHHHHHHhCCCceee
Q 024296 203 EWTTFLPALKFAREQGLQITLHCGEIPNK-EEIQSM--------L-DF---L-PQRIGHACCFEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~~~-e~i~~a--------i-~l---~-a~RIGHG~~~~~~l~~~l~~~~I~lEi 268 (269)
+++.+..+++.|++.|+++.+|+.|.... +.+.+. + .+ + ..++.|++.++++.++++++.++.+..
T Consensus 197 ~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~~~~~~~l~H~~~~~~~~~~~~~~~g~~v~~ 276 (445)
T PRK07228 197 TEELLRGVRDLADEYGVRIHTHASENRGEIETVEEETGMRNIHYLDEVGLTGEDLILAHCVWLDEEEREILAETGTHVTH 276 (445)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHCCCCCCCcEEEEEecCCHHHHHHHHHcCCeEEE
Confidence 45778889999999999999999885321 111110 0 11 1 357899999999999999999998877
Q ss_pred C
Q 024296 269 S 269 (269)
Q Consensus 269 c 269 (269)
|
T Consensus 277 ~ 277 (445)
T PRK07228 277 C 277 (445)
T ss_pred C
Confidence 6
No 51
>PRK08418 chlorohydrolase; Provisional
Probab=96.63 E-value=0.2 Score=47.51 Aligned_cols=67 Identities=24% Similarity=0.249 Sum_probs=48.8
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCCh-hHH------------------------HHHH-hcC--CCcccccccCCHH
Q 024296 203 EWTTFLPALKFAREQGLQITLHCGEIPNK-EEI------------------------QSML-DFL--PQRIGHACCFEEE 254 (269)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~~~-e~i------------------------~~ai-~l~--a~RIGHG~~~~~~ 254 (269)
+++.+..+.+.|++.|+++++|+.|+... +.+ .+-+ .++ -.-+.|++.++++
T Consensus 188 s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~~~~~~~~~~~~pv~~l~~~g~~~~~~~H~~~~~~~ 267 (408)
T PRK08418 188 HPILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFEKFLKEPKPLYTPKEFLELFKGLRTLFTHCVYASEE 267 (408)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhhhhcccccccCCHHHHHHHhCCCCeEEEecccCCHH
Confidence 45778889999999999999999995311 001 1111 133 2345799999999
Q ss_pred HHHHHHhCCCceeeC
Q 024296 255 EWRKLKSSKIPVRIS 269 (269)
Q Consensus 255 l~~~l~~~~I~lEic 269 (269)
-+++|+++++.+-.|
T Consensus 268 di~~la~~g~~v~~c 282 (408)
T PRK08418 268 ELEKIKSKNASITHC 282 (408)
T ss_pred HHHHHHHcCCcEEEC
Confidence 999999999887766
No 52
>PRK06846 putative deaminase; Validated
Probab=96.03 E-value=0.34 Score=45.81 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=53.9
Q ss_pred HHHHHHHHhhCCCceEEEecCCCCC--CCChhhHHHHHHHHHHcCCceeeecCCCCCh--hHHHHHH----hcC---CCc
Q 024296 176 METVKLALEMRDLGVVGIDLSGNPT--KGEWTTFLPALKFAREQGLQITLHCGEIPNK--EEIQSML----DFL---PQR 244 (269)
Q Consensus 176 ~~~~~~a~~~~~~~vvGidl~G~E~--~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~--e~i~~ai----~l~---a~R 244 (269)
.+.++.+.+...+ ++| .+ ++.. ..+.+.+..+++.|++.|+++.+|..|.... ..+...+ +.| .-=
T Consensus 178 ~~lL~~al~~Ga~-~i~-gl-~p~~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~~~~~~~~~~~~~~gl~~~v~ 254 (410)
T PRK06846 178 EPLMREAMKMGAH-LVG-GV-DPASVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGPLGVATIKYLVETTEEAQWKGKVT 254 (410)
T ss_pred HHHHHHHHHcCCC-EEe-CC-CCccCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCChhHHHHHHHHHHHHHhCCCCCEE
Confidence 4566666665433 333 22 2221 2234668899999999999999999987643 1222222 222 222
Q ss_pred ccccccC---CH----HHHHHHHhCCCceee
Q 024296 245 IGHACCF---EE----EEWRKLKSSKIPVRI 268 (269)
Q Consensus 245 IGHG~~~---~~----~l~~~l~~~~I~lEi 268 (269)
++|++.+ ++ .+++++++.++.+-.
T Consensus 255 ~~H~~~l~~~~~~e~~~li~~la~~g~~v~~ 285 (410)
T PRK06846 255 ISHAFALGDLNEEEVEELAERLAAQGISITS 285 (410)
T ss_pred EEecchhhcCCHHHHHHHHHHHHHcCCeEEE
Confidence 4688753 33 246789999987643
No 53
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=95.93 E-value=0.077 Score=50.73 Aligned_cols=66 Identities=18% Similarity=0.093 Sum_probs=50.9
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHh-cCC---------------CcccccccCCHHHHHHHHhCCCc
Q 024296 202 GEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FLP---------------QRIGHACCFEEEEWRKLKSSKIP 265 (269)
Q Consensus 202 ~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~-l~a---------------~RIGHG~~~~~~l~~~l~~~~I~ 265 (269)
.+++.+..+++.|++.|+++.+|++|.. ..+..+++ +|. .++.|++.++++.+++++++++.
T Consensus 199 ~~~~~l~~~~~~A~~~g~~v~~H~~e~~--~~~~~~~~~~g~~~~~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~ 276 (443)
T PRK09045 199 VSDENLERIRTLAEQLDLPIHIHLHETA--QEIADSLKQHGQRPLARLARLGLLGPRLIAVHMTQLTDAEIALLAETGCS 276 (443)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeecCcH--HHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCe
Confidence 3557899999999999999999999853 22333333 222 34679999999999999999999
Q ss_pred eeeC
Q 024296 266 VRIS 269 (269)
Q Consensus 266 lEic 269 (269)
+-.|
T Consensus 277 i~~~ 280 (443)
T PRK09045 277 VVHC 280 (443)
T ss_pred EEEC
Confidence 8776
No 54
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=95.83 E-value=0.085 Score=51.18 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=49.8
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCCCCCh-hHHH--------HHH-hcC----CCcccccccCCH---------HHHHH
Q 024296 202 GEWTTFLPALKFAREQGLQITLHCGEIPNK-EEIQ--------SML-DFL----PQRIGHACCFEE---------EEWRK 258 (269)
Q Consensus 202 ~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~-e~i~--------~ai-~l~----a~RIGHG~~~~~---------~l~~~ 258 (269)
.+++.+..+++.|++.|+++.+|+.|.... +.+. +.+ ++| --++.|++.+++ +.+++
T Consensus 218 ~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~ 297 (488)
T PRK06151 218 CTVDLLRRTAAAARELGCPVRLHCAQGVLEVETVRRLHGTTPLEWLADVGLLGPRLLIPHATYISGSPRLNYSGGDDLAL 297 (488)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHHHcCCCHHHHHHHcCCCCCCcEEEEEEEcCCccccccCCHHHHHH
Confidence 456788899999999999999999884321 1111 111 122 236889999988 89999
Q ss_pred HHhCCCceeeC
Q 024296 259 LKSSKIPVRIS 269 (269)
Q Consensus 259 l~~~~I~lEic 269 (269)
|+++++.+-.|
T Consensus 298 la~~g~~v~~~ 308 (488)
T PRK06151 298 LAEHGVSIVHC 308 (488)
T ss_pred HHhcCCEEEEC
Confidence 99999988765
No 55
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.66 E-value=0.72 Score=40.52 Aligned_cols=209 Identities=15% Similarity=0.141 Sum_probs=131.3
Q ss_pred ccCCCCCHHHHHHHHHHhccCCCccch-----hhHHHHhhcCCCHHHHHHHhHH------HHHhhCCHHHHHHHHHHHHH
Q 024296 15 HLNGSIRDSTLLELARVLGEKGVIVFS-----DVEHVIMKSDRSLHEVFKLFDL------IHVLTTDHATVTRITQEVVE 83 (269)
Q Consensus 15 HL~Gs~~~~tl~~la~~~~~~g~~~~~-----~~~~~~~~~~~~l~~f~~~f~~------~~~l~~~~~~~~~~~~~~~~ 83 (269)
+.+..++.+..+++++...+.|+.... ..+. . ....+..+.++.... +..+.++ -.+.++
T Consensus 11 ~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~-~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~-------~~~~i~ 81 (265)
T cd03174 11 SEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKA-V-PQMEDDWEVLRAIRKLVPNVKLQALVRN-------REKGIE 81 (265)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccc-c-ccCCCHHHHHHHHHhccCCcEEEEEccC-------chhhHH
Confidence 345678889998888876555654311 1100 0 001222333333211 1111222 155667
Q ss_pred HHHhcCCeEEEEecCCCC-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCceE
Q 024296 84 DFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYV 160 (269)
Q Consensus 84 ~~~~dnV~Y~Elr~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (269)
.+.+-|+..+-+-..... | ...+.+.++.++.+.+.++.+++ .|+.+
T Consensus 82 ~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~------------------------------~G~~v 131 (265)
T cd03174 82 RALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKE------------------------------AGLEV 131 (265)
T ss_pred HHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------CCCeE
Confidence 777778877777665332 1 12345677788888888887643 46777
Q ss_pred EEEE-EEeC-CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C-CceeeecCCCCC--hhHH
Q 024296 161 RLLL-SIDR-RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G-LQITLHCGEIPN--KEEI 234 (269)
Q Consensus 161 rli~-~~~R-~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-g-l~~t~HAGE~~~--~e~i 234 (269)
.+-+ ++.| ..+++...+.++.+.+...+.|.-.|..|. ..|.+....++..++. + +++-+|+-.+.+ ..|.
T Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~ 208 (265)
T cd03174 132 EGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGL---ATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANS 208 (265)
T ss_pred EEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCC---cCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHH
Confidence 7766 4555 267888888999888877666776677775 3467777888877765 3 999999988775 4688
Q ss_pred HHHHhcCCCccccccc-C--------CHHHHHHHHhCCCc
Q 024296 235 QSMLDFLPQRIGHACC-F--------EEEEWRKLKSSKIP 265 (269)
Q Consensus 235 ~~ai~l~a~RIGHG~~-~--------~~~l~~~l~~~~I~ 265 (269)
.+|+..|+++|.=.+. + .++++..+..+++.
T Consensus 209 laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~~~~ 248 (265)
T cd03174 209 LAALEAGADRVDGSVNGLGERAGNAATEDLVAALEGLGID 248 (265)
T ss_pred HHHHHcCCCEEEeccccccccccCccHHHHHHHHHhcCCC
Confidence 8999999999854432 1 25677778777643
No 56
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=95.48 E-value=1 Score=40.28 Aligned_cols=135 Identities=15% Similarity=0.042 Sum_probs=93.9
Q ss_pred HHHHHHhcCCeEEEEecCCC--C-cccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC
Q 024296 81 VVEDFASENIVYLELRTTPK--R-NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (269)
Q Consensus 81 ~~~~~~~dnV~Y~Elr~~p~--~-~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (269)
-++.+.+-|+..+-+-++.. . ....+.+.++.++.+.+.++.+++ .|
T Consensus 76 di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~------------------------------~G 125 (262)
T cd07948 76 DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKS------------------------------KG 125 (262)
T ss_pred HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------CC
Confidence 34555666888777655422 1 123467889999999999987643 36
Q ss_pred ceEEEEE-EEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCC--hhH
Q 024296 158 IYVRLLL-SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPN--KEE 233 (269)
Q Consensus 158 i~~rli~-~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~--~e~ 233 (269)
+.+++-+ +..| .+++...+.++.+.+...+.+.=-|.+|. ..|.+....++..++. ++++.+|+--+.+ ..|
T Consensus 126 ~~v~~~~eda~r-~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an 201 (262)
T cd07948 126 IEVRFSSEDSFR-SDLVDLLRVYRAVDKLGVNRVGIADTVGI---ATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIAN 201 (262)
T ss_pred CeEEEEEEeeCC-CCHHHHHHHHHHHHHcCCCEEEECCcCCC---CCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHH
Confidence 6666654 3444 56788888888877765566666677773 3456666667766664 7999999988876 367
Q ss_pred HHHHHhcCCCcccccc
Q 024296 234 IQSMLDFLPQRIGHAC 249 (269)
Q Consensus 234 i~~ai~l~a~RIGHG~ 249 (269)
...|++.|++++.=.+
T Consensus 202 ~~~a~~aG~~~vd~s~ 217 (262)
T cd07948 202 AYAALEAGATHIDTTV 217 (262)
T ss_pred HHHHHHhCCCEEEEec
Confidence 8889999999886554
No 57
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=95.02 E-value=3 Score=39.58 Aligned_cols=158 Identities=18% Similarity=0.112 Sum_probs=87.9
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 024296 66 VLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (269)
Q Consensus 66 ~l~~~~~~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (269)
..+.++++++..+...+.++.+.|+.. .++.+.... .-.+...+++.+.
T Consensus 93 ~~~~~~e~~~~~a~~~~~e~l~~G~t~--~~~~~~~~~-------~~~~~~~~a~~~~---------------------- 141 (421)
T COG0402 93 ARLLTEEDLYARALLALLEMLRNGTTT--ARTHVDVVA-------ESADAAFEAALEV---------------------- 141 (421)
T ss_pred hhcCCHHHHHHHHHHHHHHHHhcCccc--cccccchhh-------hhHHHHHHHHHHh----------------------
Confidence 334678899999999999999999988 443332211 1122333343332
Q ss_pred ccccccCCCCCCceEEEEE-EEeCCCC-------H--HHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHH
Q 024296 146 MNDACNGTRGKKIYVRLLL-SIDRRET-------T--EAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAR 215 (269)
Q Consensus 146 ~~~~~~~~~~~~i~~rli~-~~~R~~~-------~--~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar 215 (269)
++.+.+-. ...+.++ + +.+.+.++.+.... ...+|+.-.+.+.. +++....+.+.++
T Consensus 142 -----------g~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~-~~~~~~~~~~l~~ 208 (421)
T COG0402 142 -----------GLRAVLGPVLQDVAFPDPGAETDEELEETEELLREAHGLG-RDVVGLAPHFPYTV-SPELLESLDELAR 208 (421)
T ss_pred -----------CCeeEeeeccccCCCCcccccchHHHHHHHHHHHHHhcCC-CeeEEEecCCCCCC-CHHHHHHHHHHHh
Confidence 22221111 1111111 1 12333333333222 23555544443432 3455666666777
Q ss_pred HcCCceeeecCCCCChhHHHHHHh------------cC----CCcccccccCCHHHHHHHHhCCCceeeC
Q 024296 216 EQGLQITLHCGEIPNKEEIQSMLD------------FL----PQRIGHACCFEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 216 ~~gl~~t~HAGE~~~~e~i~~ai~------------l~----a~RIGHG~~~~~~l~~~l~~~~I~lEic 269 (269)
+.|+++.+|+.|+... +...++ .| -.=..|++.+.+.-+++++++++.+-.|
T Consensus 209 ~~~~~v~iH~~E~~~e--~~~~~~~~g~~~~~~~~~~g~l~~~~~~~H~~~~~~~e~~~l~~~g~~v~~c 276 (421)
T COG0402 209 KYGLPVHIHLAETLDE--VERVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSEEELELLAESGASVVHC 276 (421)
T ss_pred cCCCceEEEecCcHHH--HHHHHhhcCCCHHHHHHHcCCCCCCeEEEEeccCCHHHHHHHhhCCCeEEEC
Confidence 8899999999997632 221111 11 1234577788888889999999998776
No 58
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=94.91 E-value=1 Score=39.93 Aligned_cols=151 Identities=12% Similarity=0.055 Sum_probs=100.2
Q ss_pred HHHHHhcCCeEEEEecCCCC---cccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc
Q 024296 82 VEDFASENIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (269)
Q Consensus 82 ~~~~~~dnV~Y~Elr~~p~~---~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (269)
++.+..-|+.++-+-++-.. ....+.+.++.++.+.+.++.+++ .|+
T Consensus 75 v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~------------------------------~G~ 124 (259)
T cd07939 75 IEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKD------------------------------RGL 124 (259)
T ss_pred HHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------CCC
Confidence 45556668877666543221 123467889999999999887653 255
Q ss_pred eEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCC--hhHHH
Q 024296 159 YVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPN--KEEIQ 235 (269)
Q Consensus 159 ~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~--~e~i~ 235 (269)
.+++-..-.-..+++...+.++.+.+...+.|.=-|.+|.- .|.+....+..+++. ++++-+|+--+.+ ..|..
T Consensus 125 ~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~---~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~An~l 201 (259)
T cd07939 125 FVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGIL---DPFTTYELIRRLRAATDLPLEFHAHNDLGLATANTL 201 (259)
T ss_pred eEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCC---CHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHH
Confidence 55543322223568888888888777655666666777743 467777778777764 7999999988776 36788
Q ss_pred HHHhcCCCccccccc--------C-CHHHHHHHHhC-CCc
Q 024296 236 SMLDFLPQRIGHACC--------F-EEEEWRKLKSS-KIP 265 (269)
Q Consensus 236 ~ai~l~a~RIGHG~~--------~-~~~l~~~l~~~-~I~ 265 (269)
.|++.|+++|.=.+. . .++++..+.+. ++.
T Consensus 202 aAi~aG~~~vd~s~~G~G~~aGN~~tE~lv~~l~~~~g~~ 241 (259)
T cd07939 202 AAVRAGATHVSVTVNGLGERAGNAALEEVVMALKHLYGRD 241 (259)
T ss_pred HHHHhCCCEEEEecccccccccCcCHHHHHHHHHHhcCCC
Confidence 899999999854332 1 25677777665 554
No 59
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=94.91 E-value=0.073 Score=51.30 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=50.7
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHh-----cC----CCcccccccCCHHHHHHHHhCCCceeeC
Q 024296 203 EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-----FL----PQRIGHACCFEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~-----l~----a~RIGHG~~~~~~l~~~l~~~~I~lEic 269 (269)
+++.+..+++.|++.|+++.+|+......+.+.++++ .| ..+|.|+..++++.++++++.++.+++|
T Consensus 293 ~~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l~~~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~~~gv~~~~~ 368 (479)
T cd01300 293 SPEELEELVRAADEAGLQVAIHAIGDRAVDTVLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKLGVIASVQ 368 (479)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHHHHHhcCCCCCCceeeecccCCHHHHHHHHHcCCceEeC
Confidence 4567888999999999999999964322222223322 12 3789999999999999999999999876
No 60
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=94.84 E-value=1.3 Score=41.39 Aligned_cols=137 Identities=12% Similarity=0.089 Sum_probs=96.2
Q ss_pred HHHHHHHHhcCCeEEEEecCCCC-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 024296 79 QEVVEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (269)
Q Consensus 79 ~~~~~~~~~dnV~Y~Elr~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (269)
.+-++.+.+-|+.++-+-++-.. + ..-+.+.++.++.+.+.++.+++
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~------------------------------ 123 (363)
T TIGR02090 74 KKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKE------------------------------ 123 (363)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------
Confidence 34456666778888777544211 1 23467889999999999987653
Q ss_pred CCceEEEEE-EEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCC--h
Q 024296 156 KKIYVRLLL-SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPN--K 231 (269)
Q Consensus 156 ~~i~~rli~-~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~--~ 231 (269)
.|+.+.+-+ ...| .+++...+.++.+.+...+.|.=-|.+|.- .|.++..+++..++. ++++-+|+--+.+ .
T Consensus 124 ~G~~v~~~~eda~r-~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~---~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~ 199 (363)
T TIGR02090 124 HGLIVEFSAEDATR-TDIDFLIKVFKRAEEAGADRINIADTVGVL---TPQKMEELIKKLKENVKLPISVHCHNDFGLAT 199 (363)
T ss_pred cCCEEEEEEeecCC-CCHHHHHHHHHHHHhCCCCEEEEeCCCCcc---CHHHHHHHHHHHhcccCceEEEEecCCCChHH
Confidence 355665544 3333 568888888888877766667777877743 467787888877764 7999999988876 3
Q ss_pred hHHHHHHhcCCCcccccc
Q 024296 232 EEIQSMLDFLPQRIGHAC 249 (269)
Q Consensus 232 e~i~~ai~l~a~RIGHG~ 249 (269)
.|...|++.|+++|.=.+
T Consensus 200 AN~laA~~aGa~~vd~s~ 217 (363)
T TIGR02090 200 ANSIAGVKAGAEQVHVTV 217 (363)
T ss_pred HHHHHHHHCCCCEEEEEe
Confidence 677888899999876544
No 61
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=94.80 E-value=2.6 Score=38.14 Aligned_cols=150 Identities=13% Similarity=0.027 Sum_probs=97.7
Q ss_pred HHHHhcCCeEEEEecCCCC-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCce
Q 024296 83 EDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIY 159 (269)
Q Consensus 83 ~~~~~dnV~Y~Elr~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (269)
+.+.+-|+.++-+-++... + ...+.+.++.++.+.+.++.+++ .|+.
T Consensus 86 e~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~------------------------------~g~~ 135 (287)
T PRK05692 86 EAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQ------------------------------AGVR 135 (287)
T ss_pred HHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------cCCE
Confidence 4455668888777654321 1 24568889999999999887653 3555
Q ss_pred EEEEEE--EeC----CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc--CCceeeecCCCCC-
Q 024296 160 VRLLLS--IDR----RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ--GLQITLHCGEIPN- 230 (269)
Q Consensus 160 ~rli~~--~~R----~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~--gl~~t~HAGE~~~- 230 (269)
++.-++ +.- ..+++...+.++.+.+...+.|.=-|.+|. ..|.+...+++..++. ++++-+|+--+.|
T Consensus 136 v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gl 212 (287)
T PRK05692 136 VRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLGDTIGV---GTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQ 212 (287)
T ss_pred EEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccccCc---cCHHHHHHHHHHHHHhCCCCeEEEEecCCCCc
Confidence 543332 211 135777777777776654444444455553 3567788888887765 4899999988876
Q ss_pred -hhHHHHHHhcCCCcccc---------------cccCCHHHHHHHHhCCCc
Q 024296 231 -KEEIQSMLDFLPQRIGH---------------ACCFEEEEWRKLKSSKIP 265 (269)
Q Consensus 231 -~e~i~~ai~l~a~RIGH---------------G~~~~~~l~~~l~~~~I~ 265 (269)
..|..+|++.|+++|.= |-...++++..|...++.
T Consensus 213 a~AN~laA~~aG~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~g~~ 263 (287)
T PRK05692 213 ALANIYASLEEGITVFDASVGGLGGCPYAPGASGNVATEDVLYMLHGLGIE 263 (287)
T ss_pred HHHHHHHHHHhCCCEEEEEccccCCCCCCCCccccccHHHHHHHHHhcCCC
Confidence 36788999999999832 222235677777766654
No 62
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=94.26 E-value=3.6 Score=41.12 Aligned_cols=149 Identities=13% Similarity=0.030 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCC
Q 024296 75 TRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTR 154 (269)
Q Consensus 75 ~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (269)
..+++..++.+++.|+..+-+.-+... ++.+..+++.+++ .
T Consensus 95 d~vv~~~v~~a~~~Gidv~Rifd~lnd-----------~~n~~~~i~~~k~----------------------------~ 135 (596)
T PRK14042 95 DDVVRAFVKLAVNNGVDVFRVFDALND-----------ARNLKVAIDAIKS----------------------------H 135 (596)
T ss_pred hHHHHHHHHHHHHcCCCEEEEcccCcc-----------hHHHHHHHHHHHH----------------------------c
Confidence 456778899999999998655332211 4445555554432 1
Q ss_pred CCCceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCCh--
Q 024296 155 GKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNK-- 231 (269)
Q Consensus 155 ~~~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~-- 231 (269)
..-....+.++..--++++...+.++.+.+..-+.|.=-|.+|-= .|.....+++.+++. ++++-+|.--+.|-
T Consensus 136 G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l---~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~ 212 (596)
T PRK14042 136 KKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLL---TPTVTVELYAGLKQATGLPVHLHSHSTSGLAS 212 (596)
T ss_pred CCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCC---CHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHH
Confidence 112234455555555677777777776666555556666777743 355666677766664 89999999988764
Q ss_pred hHHHHHHhcCCCcccccccC------C---HHHHHHHHhCCCc
Q 024296 232 EEIQSMLDFLPQRIGHACCF------E---EEEWRKLKSSKIP 265 (269)
Q Consensus 232 e~i~~ai~l~a~RIGHG~~~------~---~~l~~~l~~~~I~ 265 (269)
.+...|++.|+++|.=.+.- + ++++..|...++.
T Consensus 213 an~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L~~~g~~ 255 (596)
T PRK14042 213 ICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTDTPYD 255 (596)
T ss_pred HHHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHHHhcCCC
Confidence 67788999999999766531 2 3566666665543
No 63
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=94.18 E-value=2.2 Score=40.12 Aligned_cols=133 Identities=14% Similarity=0.121 Sum_probs=93.5
Q ss_pred HHHHHHhcCCeEEEEecCCCC---cccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC
Q 024296 81 VVEDFASENIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (269)
Q Consensus 81 ~~~~~~~dnV~Y~Elr~~p~~---~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (269)
-++.+.+-|+.++-+-++... ....+.|.++.++.+.+.++.+++ .|
T Consensus 80 di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~------------------------------~G 129 (378)
T PRK11858 80 DIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKD------------------------------HG 129 (378)
T ss_pred HHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------CC
Confidence 355556668887777654322 134568899999999999987653 35
Q ss_pred ceEEEEE-EEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCCh--hH
Q 024296 158 IYVRLLL-SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNK--EE 233 (269)
Q Consensus 158 i~~rli~-~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~--e~ 233 (269)
+.+.+-. ...| .+++...+.++.+.+...+.|.=-|.+|.- .|.++..+++..++. ++++-+|+--+.|- .|
T Consensus 130 ~~v~~~~ed~~r-~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~---~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN 205 (378)
T PRK11858 130 LYVSFSAEDASR-TDLDFLIEFAKAAEEAGADRVRFCDTVGIL---DPFTMYELVKELVEAVDIPIEVHCHNDFGMATAN 205 (378)
T ss_pred CeEEEEeccCCC-CCHHHHHHHHHHHHhCCCCEEEEeccCCCC---CHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHH
Confidence 5555533 3333 467888888888877655666666777733 467788888877765 89999999888763 57
Q ss_pred HHHHHhcCCCcccc
Q 024296 234 IQSMLDFLPQRIGH 247 (269)
Q Consensus 234 i~~ai~l~a~RIGH 247 (269)
..+|++.|+++|.=
T Consensus 206 ~laAv~aGa~~vd~ 219 (378)
T PRK11858 206 ALAGIEAGAKQVHT 219 (378)
T ss_pred HHHHHHcCCCEEEE
Confidence 78889999999843
No 64
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=93.91 E-value=0.9 Score=39.31 Aligned_cols=81 Identities=22% Similarity=0.215 Sum_probs=56.6
Q ss_pred CCceEEEecCCCCCCCC-------hhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHh-c--CCCcccccccCCHHHH
Q 024296 187 DLGVVGIDLSGNPTKGE-------WTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-F--LPQRIGHACCFEEEEW 256 (269)
Q Consensus 187 ~~~vvGidl~G~E~~~~-------~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~-l--~a~RIGHG~~~~~~l~ 256 (269)
...++||+-.|-..... ...|.++++.|++.|+++.+|++. .+..+.+++. + ...-|.|+...+++.+
T Consensus 83 ~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~--~~~~~~~~l~~~~~~~~~i~H~~~~~~~~~ 160 (252)
T TIGR00010 83 HPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARD--AEEDVLDILREEKPKVGGVLHCFTGDAELA 160 (252)
T ss_pred CCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecC--ccHHHHHHHHhcCCCCCEEEEccCCCHHHH
Confidence 34688887776543211 145777888999999999999986 3344555554 5 3455889886677888
Q ss_pred HHHHhCCCceeeC
Q 024296 257 RKLKSSKIPVRIS 269 (269)
Q Consensus 257 ~~l~~~~I~lEic 269 (269)
+.+.++|+-+.++
T Consensus 161 ~~~~~~g~~~~~~ 173 (252)
T TIGR00010 161 KKLLDLGFYISIS 173 (252)
T ss_pred HHHHHCCCeEeec
Confidence 8888889888764
No 65
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=93.68 E-value=5.1 Score=35.99 Aligned_cols=131 Identities=14% Similarity=0.082 Sum_probs=89.8
Q ss_pred HHHHHhcCCeEEEEecCCCC---cccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc
Q 024296 82 VEDFASENIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (269)
Q Consensus 82 ~~~~~~dnV~Y~Elr~~p~~---~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (269)
++.+.+-|+.++-+-++... ....+.+.++.++.+.+.++.+++ .|+
T Consensus 79 v~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~------------------------------~G~ 128 (274)
T cd07938 79 AERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKA------------------------------AGL 128 (274)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHH------------------------------CCC
Confidence 45566778887777654322 123457888899999998887653 344
Q ss_pred eEEEEE--EEe-----CCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc--CCceeeecCCCC
Q 024296 159 YVRLLL--SID-----RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ--GLQITLHCGEIP 229 (269)
Q Consensus 159 ~~rli~--~~~-----R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~--gl~~t~HAGE~~ 229 (269)
.+..-+ ++. | .+++...+.++.+.+..-+.|.=-|.+|.- .|.....+++..++. ++++-+|+--+.
T Consensus 129 ~v~~~i~~~f~~~~~~~-~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~---~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~ 204 (274)
T cd07938 129 RVRGYVSTAFGCPYEGE-VPPERVAEVAERLLDLGCDEISLGDTIGVA---TPAQVRRLLEAVLERFPDEKLALHFHDTR 204 (274)
T ss_pred eEEEEEEeEecCCCCCC-CCHHHHHHHHHHHHHcCCCEEEECCCCCcc---CHHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 544333 332 3 357777777777776655555555666643 467788888888775 599999998887
Q ss_pred C--hhHHHHHHhcCCCccc
Q 024296 230 N--KEEIQSMLDFLPQRIG 246 (269)
Q Consensus 230 ~--~e~i~~ai~l~a~RIG 246 (269)
| ..|...|++.|+++|.
T Consensus 205 GlA~AN~laA~~aGa~~id 223 (274)
T cd07938 205 GQALANILAALEAGVRRFD 223 (274)
T ss_pred ChHHHHHHHHHHhCCCEEE
Confidence 6 4678899999999987
No 66
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=93.41 E-value=0.99 Score=38.97 Aligned_cols=80 Identities=23% Similarity=0.272 Sum_probs=57.1
Q ss_pred CceEEEecCCCCCC-C-C---h--hhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHh-cC--CCcccccccCCHHHHH
Q 024296 188 LGVVGIDLSGNPTK-G-E---W--TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FL--PQRIGHACCFEEEEWR 257 (269)
Q Consensus 188 ~~vvGidl~G~E~~-~-~---~--~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~-l~--a~RIGHG~~~~~~l~~ 257 (269)
.+++||+-.|-... . . . ..|.++++.|++.|+++.+|+|.. +..+.+.+. ++ ..-|.|+..-.++.++
T Consensus 84 ~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~--~~~~~~l~~~~~~~~~~i~H~~~~~~~~~~ 161 (251)
T cd01310 84 PKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDA--HEDVLEILKEYGPPKRGVFHCFSGSAEEAK 161 (251)
T ss_pred CCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCc--hHHHHHHHHhcCCCCCEEEEccCCCHHHHH
Confidence 35888877663322 1 1 2 347888999999999999999863 555666555 64 5668898876677777
Q ss_pred HHHhCCCceeeC
Q 024296 258 KLKSSKIPVRIS 269 (269)
Q Consensus 258 ~l~~~~I~lEic 269 (269)
.+.++|+-+.++
T Consensus 162 ~~~~~g~~~~~~ 173 (251)
T cd01310 162 ELLDLGFYISIS 173 (251)
T ss_pred HHHHcCCEEEee
Confidence 787889888764
No 67
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=93.10 E-value=3.1 Score=37.06 Aligned_cols=141 Identities=14% Similarity=0.110 Sum_probs=93.0
Q ss_pred CeEEEEecC--CCC-cccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCceEEEEEEE
Q 024296 90 IVYLELRTT--PKR-NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSI 166 (269)
Q Consensus 90 V~Y~Elr~~--p~~-~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~~ 166 (269)
+..+-+-++ +.. ....+.+.++.++.+.+.++.+++ .|+.+.+-..-
T Consensus 87 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~------------------------------~G~~v~~~~~~ 136 (268)
T cd07940 87 VDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKS------------------------------HGLDVEFSAED 136 (268)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------cCCeEEEeeec
Confidence 665555432 221 123467888889888888887643 24555543222
Q ss_pred eCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C---CceeeecCCCCCh--hHHHHHHhc
Q 024296 167 DRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G---LQITLHCGEIPNK--EEIQSMLDF 240 (269)
Q Consensus 167 ~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-g---l~~t~HAGE~~~~--e~i~~ai~l 240 (269)
.-..+++...+.++.+.+...+.|.=-|.+|. ..|.+....++..++. + +++-+|+--+.+- .|..+|++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~a 213 (268)
T cd07940 137 ATRTDLDFLIEVVEAAIEAGATTINIPDTVGY---LTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEA 213 (268)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC---CCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHh
Confidence 22256777777887777765555666676764 3567788888888775 3 8999999888763 678889999
Q ss_pred CCCccccccc-C--------CHHHHHHHHhCC
Q 024296 241 LPQRIGHACC-F--------EEEEWRKLKSSK 263 (269)
Q Consensus 241 ~a~RIGHG~~-~--------~~~l~~~l~~~~ 263 (269)
|+++|.=.+. + .++++..+..++
T Consensus 214 G~~~iD~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 214 GARQVECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred CCCEEEEEeeccccccccccHHHHHHHHHhcc
Confidence 9999864432 1 256777776665
No 68
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=93.07 E-value=5.6 Score=35.87 Aligned_cols=150 Identities=13% Similarity=0.056 Sum_probs=98.6
Q ss_pred HHHHHHhcCCeEEEEecC--CCCc-ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC
Q 024296 81 VVEDFASENIVYLELRTT--PKRN-ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (269)
Q Consensus 81 ~~~~~~~dnV~Y~Elr~~--p~~~-~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (269)
-++.+.+-|+..+-+-++ +... ...+.+.++.++.+.+.++.+++ .|
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~------------------------------~G 128 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIK------------------------------NG 128 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHh------------------------------CC
Confidence 355566668877777653 2221 23457889999999999887643 35
Q ss_pred ceEEEEEEE-e---CCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc--CCceeeecCCCCCh
Q 024296 158 IYVRLLLSI-D---RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ--GLQITLHCGEIPNK 231 (269)
Q Consensus 158 i~~rli~~~-~---R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~--gl~~t~HAGE~~~~ 231 (269)
+.+++-+.- . | .+++...+.++.+.+...+.|.=-|.+|- ..|.+...+++..++. ++++.+|+--+.|-
T Consensus 129 ~~v~~~~~d~~~~~r-~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gl 204 (280)
T cd07945 129 IEVNIYLEDWSNGMR-DSPDYVFQLVDFLSDLPIKRIMLPDTLGI---LSPFETYTYISDMVKRYPNLHFDFHAHNDYDL 204 (280)
T ss_pred CEEEEEEEeCCCCCc-CCHHHHHHHHHHHHHcCCCEEEecCCCCC---CCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCH
Confidence 565554432 1 3 36777778887777665555555566663 3466777778877764 69999999888763
Q ss_pred --hHHHHHHhcCCCccccccc-----C----CHHHHHHHHh-CCC
Q 024296 232 --EEIQSMLDFLPQRIGHACC-----F----EEEEWRKLKS-SKI 264 (269)
Q Consensus 232 --e~i~~ai~l~a~RIGHG~~-----~----~~~l~~~l~~-~~I 264 (269)
.|...|++.|+++|.=.+. . .++++..|+. .++
T Consensus 205 a~AN~laA~~aGa~~vd~s~~GlGe~aGN~~~E~~v~~L~~~~g~ 249 (280)
T cd07945 205 AVANVLAAVKAGIKGLHTTVNGLGERAGNAPLASVIAVLKDKLKV 249 (280)
T ss_pred HHHHHHHHHHhCCCEEEEecccccccccCccHHHHHHHHHHhcCC
Confidence 6888999999999874442 1 2456666644 354
No 69
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=92.92 E-value=5.8 Score=35.50 Aligned_cols=135 Identities=12% Similarity=0.084 Sum_probs=92.4
Q ss_pred HHHHHHhcCCeEEEEecCCCC-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC
Q 024296 81 VVEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (269)
Q Consensus 81 ~~~~~~~dnV~Y~Elr~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (269)
-++.+.+-|+..+-+-++... + ...+.+.++.++.+.+.++.+++ .|
T Consensus 83 ~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~------------------------------~G 132 (273)
T cd07941 83 NLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKS------------------------------HG 132 (273)
T ss_pred HHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH------------------------------cC
Confidence 355566778887766554322 1 23467888999999998887653 35
Q ss_pred ceEEEEE-EE---eCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C-CceeeecCCCCC-
Q 024296 158 IYVRLLL-SI---DRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G-LQITLHCGEIPN- 230 (269)
Q Consensus 158 i~~rli~-~~---~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-g-l~~t~HAGE~~~- 230 (269)
+++.+.. ++ .| .+++...+.++.+.....+.|.=-|.+|. ..|......++..++. + +++-+|.--+.+
T Consensus 133 ~~v~~~~~~~~d~~~-~~~~~~~~~~~~~~~~g~~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gl 208 (273)
T cd07941 133 REVIFDAEHFFDGYK-ANPEYALATLKAAAEAGADWLVLCDTNGG---TLPHEIAEIVKEVRERLPGVPLGIHAHNDSGL 208 (273)
T ss_pred CeEEEeEEeccccCC-CCHHHHHHHHHHHHhCCCCEEEEecCCCC---CCHHHHHHHHHHHHHhCCCCeeEEEecCCCCc
Confidence 5554421 11 13 36777777777777665556666677773 3467788888887764 4 899999988775
Q ss_pred -hhHHHHHHhcCCCcccccc
Q 024296 231 -KEEIQSMLDFLPQRIGHAC 249 (269)
Q Consensus 231 -~e~i~~ai~l~a~RIGHG~ 249 (269)
..|..+|++.|+++|.=.+
T Consensus 209 a~An~laA~~aGa~~id~s~ 228 (273)
T cd07941 209 AVANSLAAVEAGATQVQGTI 228 (273)
T ss_pred HHHHHHHHHHcCCCEEEEec
Confidence 4678889999999987544
No 70
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=92.63 E-value=4.1 Score=35.28 Aligned_cols=138 Identities=13% Similarity=0.079 Sum_probs=91.4
Q ss_pred HHHHHHHHhcCCeEEEEecCCCC---cccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 024296 79 QEVVEDFASENIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (269)
Q Consensus 79 ~~~~~~~~~dnV~Y~Elr~~p~~---~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (269)
...++.+..-|+..+.+-++-.. ....+.+.++.++.+.+.++.+++
T Consensus 70 ~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~------------------------------ 119 (237)
T PF00682_consen 70 ERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKE------------------------------ 119 (237)
T ss_dssp HHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHh------------------------------
Confidence 33344455677776666543222 234567888899988888887653
Q ss_pred CCceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C-CceeeecCCCCC--h
Q 024296 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G-LQITLHCGEIPN--K 231 (269)
Q Consensus 156 ~~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-g-l~~t~HAGE~~~--~ 231 (269)
.|+.+.+-+.-.-..+++...+.++.+.+...+.|.=-|.+|.- .|....++++..++. + +++-+|+--+.+ .
T Consensus 120 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~ 196 (237)
T PF00682_consen 120 LGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIM---TPEDVAELVRALREALPDIPLGFHAHNDLGLAV 196 (237)
T ss_dssp TTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S----HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HH
T ss_pred cCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCc---CHHHHHHHHHHHHHhccCCeEEEEecCCccchh
Confidence 35555433322123467888888888888877777777888754 467788888888875 4 899999987765 3
Q ss_pred hHHHHHHhcCCCcccccc
Q 024296 232 EEIQSMLDFLPQRIGHAC 249 (269)
Q Consensus 232 e~i~~ai~l~a~RIGHG~ 249 (269)
.|...|++.|+++|.=.+
T Consensus 197 An~laA~~aGa~~id~t~ 214 (237)
T PF00682_consen 197 ANALAALEAGADRIDGTL 214 (237)
T ss_dssp HHHHHHHHTT-SEEEEBG
T ss_pred HHHHHHHHcCCCEEEccC
Confidence 677889999999985433
No 71
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=92.62 E-value=5.1 Score=37.45 Aligned_cols=132 Identities=9% Similarity=0.050 Sum_probs=88.1
Q ss_pred HHHHHhcCCeEEEEecCCCC---cccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc
Q 024296 82 VEDFASENIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (269)
Q Consensus 82 ~~~~~~dnV~Y~Elr~~p~~---~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (269)
++.+.+-|+..+-+-.+... ...-+.+.++.++.+.+.++.+++ .|+
T Consensus 78 i~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~------------------------------~g~ 127 (365)
T TIGR02660 78 IEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARD------------------------------RGL 127 (365)
T ss_pred HHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHh------------------------------CCC
Confidence 44555667765555433211 123467888999998888887643 345
Q ss_pred eEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCC--hhHHH
Q 024296 159 YVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPN--KEEIQ 235 (269)
Q Consensus 159 ~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~--~e~i~ 235 (269)
.+.+-..-.-..+++...+.++.+.+...+.|.=-|.+| ...|..+..+++..++. ++++-+|+--+.| ..|..
T Consensus 128 ~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANal 204 (365)
T TIGR02660 128 FVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTVG---ILDPFSTYELVRALRQAVDLPLEMHAHNDLGMATANTL 204 (365)
T ss_pred EEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCC---CCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHH
Confidence 555433222224678888888877776555566556666 33567888888887765 8999999988776 36778
Q ss_pred HHHhcCCCccc
Q 024296 236 SMLDFLPQRIG 246 (269)
Q Consensus 236 ~ai~l~a~RIG 246 (269)
.|++.|+++|.
T Consensus 205 aA~~aGa~~vd 215 (365)
T TIGR02660 205 AAVRAGATHVN 215 (365)
T ss_pred HHHHhCCCEEE
Confidence 88899999984
No 72
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.47 E-value=0.3 Score=46.51 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=52.4
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccccCCHHHHHHHHh--CCC
Q 024296 202 GEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKS--SKI 264 (269)
Q Consensus 202 ~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~~~~l~~~l~~--~~I 264 (269)
+.+.+-..++..|++.|+++++||-+.. .+..|+++|++=+.|+..++.+..++|++ .++
T Consensus 217 fs~~e~~~~l~~a~~~g~~v~~HA~~~~---g~~~A~~~g~~s~~H~~~ld~~~~~~~a~~~~g~ 278 (406)
T COG1228 217 FSPEEIRAVLAAALKAGIPVKAHAHGAD---GIKLAIRLGAKSAEHGTLLDHETAALLAEKGAGT 278 (406)
T ss_pred cCHHHHHHHHHHHHHCCCceEEEecccc---hHHHHHHhCcceehhhhhcCHhHHHHHhhccCCC
Confidence 4556677899999999999999998765 67888999999999999999999999999 554
No 73
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=91.88 E-value=7.7 Score=35.95 Aligned_cols=106 Identities=14% Similarity=-0.000 Sum_probs=74.4
Q ss_pred CceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc---CCceeeecCCCCC--h
Q 024296 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---GLQITLHCGEIPN--K 231 (269)
Q Consensus 157 ~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~---gl~~t~HAGE~~~--~ 231 (269)
|+++...++..-..+++...+.++.+.++..+.|.=.|.+|. -.|.+....++.+++. ++++-+|+-.+.+ .
T Consensus 128 G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~---~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ 204 (337)
T PRK08195 128 GMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGA---LLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGV 204 (337)
T ss_pred CCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCC---CCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHH
Confidence 555554444333457888888888888776676777788874 3467788888888775 6999999999876 3
Q ss_pred hHHHHHHhcCCCccccccc-----C----CHHHHHHHHhCCCc
Q 024296 232 EEIQSMLDFLPQRIGHACC-----F----EEEEWRKLKSSKIP 265 (269)
Q Consensus 232 e~i~~ai~l~a~RIGHG~~-----~----~~~l~~~l~~~~I~ 265 (269)
-|...|++.|+++|.=.+. . .+.++..+.+.++.
T Consensus 205 ANslaAi~aGa~~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~~ 247 (337)
T PRK08195 205 ANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLDRMGWE 247 (337)
T ss_pred HHHHHHHHhCCCEEEecChhhcccccCccHHHHHHHHHhcCCC
Confidence 6788899999998875543 1 24566666665543
No 74
>PRK09389 (R)-citramalate synthase; Provisional
Probab=91.64 E-value=8.5 Score=37.56 Aligned_cols=133 Identities=12% Similarity=0.056 Sum_probs=89.0
Q ss_pred HHHHHhcCCeEEEEecC--CCC-cccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc
Q 024296 82 VEDFASENIVYLELRTT--PKR-NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (269)
Q Consensus 82 ~~~~~~dnV~Y~Elr~~--p~~-~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (269)
++.+.+-|+..+-+-.+ +.. ....+.+.++.++.+.+.++.+++ .|.
T Consensus 79 i~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~------------------------------~g~ 128 (488)
T PRK09389 79 IDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKD------------------------------HGL 128 (488)
T ss_pred HHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------CCC
Confidence 44455567766555443 221 123467999999999999876643 344
Q ss_pred eEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCC--hhHHH
Q 024296 159 YVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPN--KEEIQ 235 (269)
Q Consensus 159 ~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~--~e~i~ 235 (269)
.+.+-..-.-..+++.+.+.++.+.+...+.|.=-|.+|. ..|.++..+++.+++. ++++-+|+--..+ .-|..
T Consensus 129 ~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~---~~P~~~~~lv~~l~~~~~v~l~~H~HND~GlAvANal 205 (488)
T PRK09389 129 IVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTVGI---LTPEKTYELFKRLSELVKGPVSIHCHNDFGLAVANTL 205 (488)
T ss_pred EEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC---cCHHHHHHHHHHHHhhcCCeEEEEecCCccHHHHHHH
Confidence 5444332222245788888888887765566666677763 3567788888888764 7999999987765 35778
Q ss_pred HHHhcCCCcccc
Q 024296 236 SMLDFLPQRIGH 247 (269)
Q Consensus 236 ~ai~l~a~RIGH 247 (269)
.|++.|+++|.=
T Consensus 206 aAv~aGa~~Vd~ 217 (488)
T PRK09389 206 AALAAGADQVHV 217 (488)
T ss_pred HHHHcCCCEEEE
Confidence 888999998753
No 75
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=91.57 E-value=0.61 Score=43.51 Aligned_cols=63 Identities=19% Similarity=0.340 Sum_probs=49.1
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCChhHH---HHHHh-cCCC-cccccccCCHHHHHHHHhCCCceee
Q 024296 203 EWTTFLPALKFAREQGLQITLHCGEIPNKEEI---QSMLD-FLPQ-RIGHACCFEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i---~~ai~-l~a~-RIGHG~~~~~~l~~~l~~~~I~lEi 268 (269)
...++..+.+.|++.|+++.+|+ .+...+ .++++ .+.. ||.|+....++.++.+++.++..++
T Consensus 223 ~~~~l~~~v~~a~~~g~~v~vHa---~gd~a~~~~l~a~~~~~~~~~i~h~~~~~~~~~~~~~~l~~~~~~ 290 (404)
T PF07969_consen 223 DPEELEELVRAAREAGLQVAVHA---IGDRAIDEALDAIEAARARGRIEHAELIDPDDIERMAELGVTASV 290 (404)
T ss_dssp SHHHHHHHHHHHHHCT-EEEEEE---ESHHHHHHHHHHHHHHTCCHEEEEHCBCCHHHHHHHHHHTTEEEE
T ss_pred cchhHHHHHHHHHhcCCeeEEEE---cCCchHHhHHHHHHhhcccceeeccccCCHHHHHHHHHhCCcccc
Confidence 34458889999999999999999 344444 45554 4555 9999999999999999999988775
No 76
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=91.47 E-value=11 Score=36.50 Aligned_cols=146 Identities=15% Similarity=0.101 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 024296 76 RITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (269)
Q Consensus 76 ~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (269)
.++..+++.+++.||..+=+..... . ++.+...++.+++
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd~ln--------d---~~n~~~ai~~ak~------------------------------ 143 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFDALN--------D---PRNIQQALRAVKK------------------------------ 143 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcccCC--------C---HHHHHHHHHHHHH------------------------------
Confidence 4566678999999999865533221 1 4444455554432
Q ss_pred CCce--EEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCC--
Q 024296 156 KKIY--VRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPN-- 230 (269)
Q Consensus 156 ~~i~--~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~-- 230 (269)
.|.. +-+-++..-.++.+...+.++.+.+..-+.|.=-|.+|-= .|.....+++..++. ++++-+|+--+.|
T Consensus 144 ~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l---~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA 220 (468)
T PRK12581 144 TGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGIL---TPKAAKELVSGIKAMTNLPLIVHTHATSGIS 220 (468)
T ss_pred cCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCc---CHHHHHHHHHHHHhccCCeEEEEeCCCCccH
Confidence 2333 3444444444455555666666655544556666777744 356666667766664 7999999988876
Q ss_pred hhHHHHHHhcCCCcccccccC------C---HHHHHHHHhCCCc
Q 024296 231 KEEIQSMLDFLPQRIGHACCF------E---EEEWRKLKSSKIP 265 (269)
Q Consensus 231 ~e~i~~ai~l~a~RIGHG~~~------~---~~l~~~l~~~~I~ 265 (269)
..|...|++.|+++|.=.+.- + ++++..|...++.
T Consensus 221 ~An~laAieAGad~vD~ai~g~g~gagN~~tE~lv~~L~~~g~~ 264 (468)
T PRK12581 221 QMTYLAAVEAGADRIDTALSPFSEGTSQPATESMYLALKEAGYD 264 (468)
T ss_pred HHHHHHHHHcCCCEEEeeccccCCCcCChhHHHHHHHHHhcCCC
Confidence 467889999999998765531 2 3567677766554
No 77
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=91.25 E-value=11 Score=36.28 Aligned_cols=145 Identities=11% Similarity=0.046 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCC
Q 024296 77 ITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (269)
Q Consensus 77 ~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (269)
+..+.++.+++.|+.++-+..+.... +.+.+.++.+++ .
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~-----------~n~~~~v~~ak~------------------------------~ 135 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDV-----------RNLETAVKATKK------------------------------A 135 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH-----------HHHHHHHHHHHH------------------------------c
Confidence 46678888889999987776543321 123334444322 2
Q ss_pred CceEEE--EEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCC--h
Q 024296 157 KIYVRL--LLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPN--K 231 (269)
Q Consensus 157 ~i~~rl--i~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~--~ 231 (269)
|..+.. -++..-..+++...+.++.+.+..-+.|.=-|.+|-= .|.....+++.+|+. ++++-+|+--+.| .
T Consensus 136 G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l---~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~ 212 (448)
T PRK12331 136 GGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGIL---TPYVAYELVKRIKEAVTVPLEVHTHATSGIAE 212 (448)
T ss_pred CCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC---CHHHHHHHHHHHHHhcCCeEEEEecCCCCcHH
Confidence 444433 3333222456666666666665544556666777743 356666677777664 8999999988876 4
Q ss_pred hHHHHHHhcCCCcccccccC------C---HHHHHHHHhCCCc
Q 024296 232 EEIQSMLDFLPQRIGHACCF------E---EEEWRKLKSSKIP 265 (269)
Q Consensus 232 e~i~~ai~l~a~RIGHG~~~------~---~~l~~~l~~~~I~ 265 (269)
.|..+|++.|+++|.=.+.- + ++++..|...++.
T Consensus 213 AN~laAieaGad~vD~sv~glg~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 213 MTYLKAIEAGADIIDTAISPFAGGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred HHHHHHHHcCCCEEEeeccccCCCcCCHhHHHHHHHHHhcCCC
Confidence 67889999999998765531 2 3566667665543
No 78
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=91.08 E-value=11 Score=35.28 Aligned_cols=148 Identities=14% Similarity=0.016 Sum_probs=96.5
Q ss_pred HHHhcCCeEEEEecCCCC-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCceE
Q 024296 84 DFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYV 160 (269)
Q Consensus 84 ~~~~dnV~Y~Elr~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (269)
.+.+-|+..+-+-++... + ...+.+.++.++.+.+.++.+++ .|+.+
T Consensus 129 ~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~------------------------------~Gl~v 178 (347)
T PLN02746 129 AAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKK------------------------------HSIPV 178 (347)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------cCCeE
Confidence 334458877777654221 2 23468899999999998887643 35666
Q ss_pred EEEEEE-------eCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C-CceeeecCCCCC-
Q 024296 161 RLLLSI-------DRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G-LQITLHCGEIPN- 230 (269)
Q Consensus 161 rli~~~-------~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-g-l~~t~HAGE~~~- 230 (269)
+.-++. .| .+++...+.++.+.+..-+.|.=-|.+|-= .|.+...+++.+++. + .++-+|.--+.|
T Consensus 179 ~~~is~~fg~p~~~r-~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a---~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~Gl 254 (347)
T PLN02746 179 RGYVSCVVGCPIEGP-VPPSKVAYVAKELYDMGCYEISLGDTIGVG---TPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQ 254 (347)
T ss_pred EEEEEeeecCCccCC-CCHHHHHHHHHHHHHcCCCEEEecCCcCCc---CHHHHHHHHHHHHHhCCCCeEEEEECCCCCh
Confidence 544432 22 357777777777776644445555666633 467777788877764 4 578999988876
Q ss_pred -hhHHHHHHhcCCCccccccc-----------C----CHHHHHHHHhCCCc
Q 024296 231 -KEEIQSMLDFLPQRIGHACC-----------F----EEEEWRKLKSSKIP 265 (269)
Q Consensus 231 -~e~i~~ai~l~a~RIGHG~~-----------~----~~~l~~~l~~~~I~ 265 (269)
..|...|++.|++++.=.+. . .++++..+...++.
T Consensus 255 A~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~G~~ 305 (347)
T PLN02746 255 ALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVS 305 (347)
T ss_pred HHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhcCCC
Confidence 46888999999998764432 1 24566666666553
No 79
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=91.07 E-value=5.4 Score=36.90 Aligned_cols=105 Identities=13% Similarity=-0.007 Sum_probs=72.5
Q ss_pred CceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C--CceeeecCCCCC--h
Q 024296 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G--LQITLHCGEIPN--K 231 (269)
Q Consensus 157 ~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-g--l~~t~HAGE~~~--~ 231 (269)
|+++...++..-..+++...+.++.+.++..+.|.=.|.+|.= .|.+....+..+++. + +++-+|+-.+.+ .
T Consensus 127 G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~---~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ 203 (333)
T TIGR03217 127 GMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAM---LPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAV 203 (333)
T ss_pred CCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCC---CHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHH
Confidence 4554333322223578888888888877777778888888843 467777788877764 4 899999999876 3
Q ss_pred hHHHHHHhcCCCccccccc-C--------CHHHHHHHHhCCC
Q 024296 232 EEIQSMLDFLPQRIGHACC-F--------EEEEWRKLKSSKI 264 (269)
Q Consensus 232 e~i~~ai~l~a~RIGHG~~-~--------~~~l~~~l~~~~I 264 (269)
-|...|++.|++||.=.+. + .+.++..+.+.++
T Consensus 204 ANslaAi~aGa~~iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~ 245 (333)
T TIGR03217 204 ANSIAAIEAGATRIDASLRGLGAGAGNAPLEVFVAVLDRLGW 245 (333)
T ss_pred HHHHHHHHhCCCEEEeecccccccccCccHHHHHHHHHhcCC
Confidence 6778889999999875543 1 2456666666554
No 80
>PRK15108 biotin synthase; Provisional
Probab=91.03 E-value=3 Score=38.79 Aligned_cols=81 Identities=11% Similarity=0.130 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCC-CCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCccccc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGN-PTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 248 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~-E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG 248 (269)
.+++++.+.+..+.+..-..|+ +..+|. +...+.+.+.++++.+|+.|+.+.++.|..+ .+.+...-+.|++|+.|.
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~-i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~ls-~e~l~~LkeAGld~~n~~ 153 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFC-MGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGTLS-ESQAQRLANAGLDYYNHN 153 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-EEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCcCC-HHHHHHHHHcCCCEEeec
Confidence 5677776666655543323342 333442 2233456788899999988999999999754 665666557899999997
Q ss_pred ccCC
Q 024296 249 CCFE 252 (269)
Q Consensus 249 ~~~~ 252 (269)
+..+
T Consensus 154 leT~ 157 (345)
T PRK15108 154 LDTS 157 (345)
T ss_pred cccC
Confidence 6543
No 81
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=90.21 E-value=12 Score=36.33 Aligned_cols=147 Identities=10% Similarity=0.077 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCC
Q 024296 75 TRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTR 154 (269)
Q Consensus 75 ~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (269)
.+++...++.+++.||..+-+..+... ++.+..+++.+++
T Consensus 94 dDvv~~fv~~A~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak~----------------------------- 133 (467)
T PRK14041 94 DDVVELFVKKVAEYGLDIIRIFDALND-----------IRNLEKSIEVAKK----------------------------- 133 (467)
T ss_pred chhhHHHHHHHHHCCcCEEEEEEeCCH-----------HHHHHHHHHHHHH-----------------------------
Confidence 345667788888999988766543321 3445555554432
Q ss_pred CCCceEEEEEEEeC--CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCC-
Q 024296 155 GKKIYVRLLLSIDR--RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPN- 230 (269)
Q Consensus 155 ~~~i~~rli~~~~R--~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~- 230 (269)
.|..+..-+|... ..+++...+.++.+.+..-+.|.=-|.+|-= .|.....+++.+|+. ++++-+|+--+.|
T Consensus 134 -~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l---~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~Gl 209 (467)
T PRK14041 134 -HGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLL---TPKRAYELVKALKKKFGVPVEVHSHCTTGL 209 (467)
T ss_pred -CCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCc---CHHHHHHHHHHHHHhcCCceEEEecCCCCc
Confidence 2444443333322 2355656666665555544445555777643 456667777777664 8999999988876
Q ss_pred -hhHHHHHHhcCCCcccccccC------C---HHHHHHHHhCCCc
Q 024296 231 -KEEIQSMLDFLPQRIGHACCF------E---EEEWRKLKSSKIP 265 (269)
Q Consensus 231 -~e~i~~ai~l~a~RIGHG~~~------~---~~l~~~l~~~~I~ 265 (269)
.-|..+|++.|+++|.=.+.- + ++++..|+..++.
T Consensus 210 A~AN~laAieaGad~vD~sv~~~g~gagN~atE~lv~~L~~~g~~ 254 (467)
T PRK14041 210 ASLAYLAAVEAGADMFDTAISPFSMGTSQPPFESMYYAFRENGKE 254 (467)
T ss_pred HHHHHHHHHHhCCCEEEeeccccCCCCCChhHHHHHHHHHhcCCC
Confidence 367889999999998766531 2 3566667665543
No 82
>PRK07094 biotin synthase; Provisional
Probab=89.84 E-value=1.6 Score=39.90 Aligned_cols=85 Identities=24% Similarity=0.185 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCC-CChhhHHHHHHHHHH-cCCceeeecCCCCChhHHHHHHhcCCCccccc
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTK-GEWTTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 248 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~-~~~~~f~~~f~~ar~-~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG 248 (269)
++++..+.++.+.+. ++-.|-+.|.++. .+...+.++++.+++ .|+.++++.|.. +.+.+...-+.|.+|+.+|
T Consensus 71 s~eei~~~~~~~~~~---g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~~-~~e~l~~Lk~aG~~~v~~g 146 (323)
T PRK07094 71 SPEEILECAKKAYEL---GYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGER-SYEEYKAWKEAGADRYLLR 146 (323)
T ss_pred CHHHHHHHHHHHHHC---CCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCCC-CHHHHHHHHHcCCCEEEec
Confidence 677666666655542 4556666665543 345778889999988 489999998874 4565655556899999999
Q ss_pred ccC-CHHHHHHH
Q 024296 249 CCF-EEEEWRKL 259 (269)
Q Consensus 249 ~~~-~~~l~~~l 259 (269)
+.. +|++.+.+
T Consensus 147 lEs~~~~~~~~i 158 (323)
T PRK07094 147 HETADKELYAKL 158 (323)
T ss_pred cccCCHHHHHHh
Confidence 864 45444333
No 83
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=89.63 E-value=3.2 Score=38.28 Aligned_cols=61 Identities=10% Similarity=0.048 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccccCCHHHHHHHHhCCCceee
Q 024296 204 WTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 204 ~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~~~~l~~~l~~~~I~lEi 268 (269)
.+....+.+.|++.|+++..|+.++ ++.+..+...|+.=+.|+ .+.+..+.++++|+.+-+
T Consensus 162 ~~~~~~iv~~A~~~gl~vasH~d~~--~~~v~~a~~~Gv~~~E~p--~t~e~a~~a~~~G~~vv~ 222 (325)
T cd01306 162 PANRSELAALARARGIPLASHDDDT--PEHVAEAHELGVVISEFP--TTLEAAKAARELGLQTLM 222 (325)
T ss_pred HHHHHHHHHHHHHCCCcEEEecCCC--hHHHHHHHHCCCeeccCC--CCHHHHHHHHHCCCEEEe
Confidence 4668889999999999999999874 577888888887766665 467888899999987754
No 84
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=89.41 E-value=16 Score=36.44 Aligned_cols=146 Identities=12% Similarity=0.108 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 024296 76 RITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (269)
Q Consensus 76 ~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (269)
.++...++.+++.|+..+-+..+... ++.+..+++.+++
T Consensus 91 dvv~~~v~~a~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak~------------------------------ 129 (582)
T TIGR01108 91 DVVERFVKKAVENGMDVFRIFDALND-----------PRNLQAAIQAAKK------------------------------ 129 (582)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecCc-----------HHHHHHHHHHHHH------------------------------
Confidence 45677788888889987666443321 2345555554432
Q ss_pred CCceEEEEEE--EeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCC--
Q 024296 156 KKIYVRLLLS--IDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPN-- 230 (269)
Q Consensus 156 ~~i~~rli~~--~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~-- 230 (269)
.|..+..-+| .....+++...+.++.+.+..-+.++=-|.+|-= .|.....+++.+++. ++++-+|+--+.|
T Consensus 130 ~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~---~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla 206 (582)
T TIGR01108 130 HGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAGIL---TPKAAYELVSALKKRFGLPVHLHSHATTGMA 206 (582)
T ss_pred cCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCc---CHHHHHHHHHHHHHhCCCceEEEecCCCCcH
Confidence 2445554333 3333466777777777666555556666777743 456677777777764 7999999988876
Q ss_pred hhHHHHHHhcCCCcccccccC------C---HHHHHHHHhCCCc
Q 024296 231 KEEIQSMLDFLPQRIGHACCF------E---EEEWRKLKSSKIP 265 (269)
Q Consensus 231 ~e~i~~ai~l~a~RIGHG~~~------~---~~l~~~l~~~~I~ 265 (269)
..|...|++.|++.|.=.+.- + ++++..|...++.
T Consensus 207 ~An~laAveaGa~~vd~ai~GlG~~tGn~~le~vv~~L~~~g~~ 250 (582)
T TIGR01108 207 EMALLKAIEAGADGIDTAISSMSGGTSHPPTETMVAALRGTGYD 250 (582)
T ss_pred HHHHHHHHHhCCCEEEeccccccccccChhHHHHHHHHHhcCCC
Confidence 367889999999998755531 2 3566666665544
No 85
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=88.81 E-value=17 Score=36.43 Aligned_cols=145 Identities=17% Similarity=0.099 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 024296 76 RITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (269)
Q Consensus 76 ~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (269)
.+....++.+++.|+..+-+..+... ++.+..+++.+++
T Consensus 96 ~vv~~~v~~A~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak~------------------------------ 134 (592)
T PRK09282 96 DVVEKFVEKAAENGIDIFRIFDALND-----------VRNMEVAIKAAKK------------------------------ 134 (592)
T ss_pred hhhHHHHHHHHHCCCCEEEEEEecCh-----------HHHHHHHHHHHHH------------------------------
Confidence 45667788888899988666443321 2345555554432
Q ss_pred CCceEEEEEEEeCC--CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCC--
Q 024296 156 KKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPN-- 230 (269)
Q Consensus 156 ~~i~~rli~~~~R~--~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~-- 230 (269)
.|..+..-+|.... .+++...+.++.+.+..-+.|+=-|.+|.= .|.....+++.+++. ++++-+|+--+.|
T Consensus 135 ~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~---~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla 211 (592)
T PRK09282 135 AGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLL---TPYAAYELVKALKEEVDLPVQLHSHCTSGLA 211 (592)
T ss_pred cCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCc---CHHHHHHHHHHHHHhCCCeEEEEEcCCCCcH
Confidence 24444443443332 356666666666665544556666777743 466777778877765 7999999988876
Q ss_pred hhHHHHHHhcCCCcccccccC------C---HHHHHHHHhCCC
Q 024296 231 KEEIQSMLDFLPQRIGHACCF------E---EEEWRKLKSSKI 264 (269)
Q Consensus 231 ~e~i~~ai~l~a~RIGHG~~~------~---~~l~~~l~~~~I 264 (269)
..|..+|++.|+++|.=.+.- + ++++..|...+.
T Consensus 212 ~An~laAv~aGad~vD~ai~g~g~~agn~~~e~vv~~L~~~g~ 254 (592)
T PRK09282 212 PMTYLKAVEAGVDIIDTAISPLAFGTSQPPTESMVAALKGTPY 254 (592)
T ss_pred HHHHHHHHHhCCCEEEeeccccCCCcCCHhHHHHHHHHHhCCC
Confidence 467889999999998765531 2 345666665543
No 86
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=88.52 E-value=18 Score=32.41 Aligned_cols=144 Identities=15% Similarity=0.084 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC
Q 024296 78 TQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (269)
Q Consensus 78 ~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (269)
..+.++.+.+-|+.++-+-+ |... ++.+.+.++.+++ .|
T Consensus 93 ~~~di~~~~~~g~~~iri~~-~~~~----------~~~~~~~i~~ak~------------------------------~G 131 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFD-ALND----------VRNLEVAIKAVKK------------------------------AG 131 (275)
T ss_pred HHHHHHHHHHcCCCEEEEee-cCCh----------HHHHHHHHHHHHH------------------------------CC
Confidence 45566667777888876633 3211 4556666665532 35
Q ss_pred ceEEEEEEE--eCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCC--hh
Q 024296 158 IYVRLLLSI--DRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPN--KE 232 (269)
Q Consensus 158 i~~rli~~~--~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~--~e 232 (269)
+.+..-++. .-..+++...+.++.+.+...+.|.=-|.+|.= .|.+...+++..++. ++++-+|+-.+.| ..
T Consensus 132 ~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~---~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~a 208 (275)
T cd07937 132 KHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLL---TPYAAYELVKALKKEVGLPIHLHTHDTSGLAVA 208 (275)
T ss_pred CeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC---CHHHHHHHHHHHHHhCCCeEEEEecCCCChHHH
Confidence 555543332 123567777788887777655556666666643 467788888888775 7999999988876 36
Q ss_pred HHHHHHhcCCCccccccc-----C----CHHHHHHHHhCCCc
Q 024296 233 EIQSMLDFLPQRIGHACC-----F----EEEEWRKLKSSKIP 265 (269)
Q Consensus 233 ~i~~ai~l~a~RIGHG~~-----~----~~~l~~~l~~~~I~ 265 (269)
|...|++.|+++|.=.+. . .++++..|...++.
T Consensus 209 N~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~g~~ 250 (275)
T cd07937 209 TYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGTGRD 250 (275)
T ss_pred HHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHccCCC
Confidence 788889999998864432 1 24677777776654
No 87
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=88.31 E-value=18 Score=32.24 Aligned_cols=89 Identities=13% Similarity=0.095 Sum_probs=63.9
Q ss_pred CceEEEEE-EEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C--CceeeecCCCCC--
Q 024296 157 KIYVRLLL-SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G--LQITLHCGEIPN-- 230 (269)
Q Consensus 157 ~i~~rli~-~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-g--l~~t~HAGE~~~-- 230 (269)
|+++.+-+ +..| .+++...+.++.+.+...+.|.=-|.+|. -.|.+....++.+++. + +++-+|+--+.+
T Consensus 122 G~~v~~~~~~a~~-~~~~~~~~~~~~~~~~g~~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla 197 (266)
T cd07944 122 GYEVFFNLMAISG-YSDEELLELLELVNEIKPDVFYIVDSFGS---MYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLA 197 (266)
T ss_pred CCeEEEEEEeecC-CCHHHHHHHHHHHHhCCCCEEEEecCCCC---CCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHH
Confidence 55555433 3334 67888888888887776666777777773 3467788888887765 4 999999988876
Q ss_pred hhHHHHHHhcCCCcccccc
Q 024296 231 KEEIQSMLDFLPQRIGHAC 249 (269)
Q Consensus 231 ~e~i~~ai~l~a~RIGHG~ 249 (269)
..|..+|++.|++.|.=.+
T Consensus 198 ~AN~laA~~aGa~~vd~s~ 216 (266)
T cd07944 198 LANTLEAIELGVEIIDATV 216 (266)
T ss_pred HHHHHHHHHcCCCEEEEec
Confidence 3678889999998765443
No 88
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=88.25 E-value=9.3 Score=33.50 Aligned_cols=106 Identities=22% Similarity=0.301 Sum_probs=68.6
Q ss_pred CCCCceEEEEEEEeCCC-CHHHHHHHHHHHHhh-CCCceEEEecCCCCCCCCh--hhHHHHHHHHHHcCCceeeecCCCC
Q 024296 154 RGKKIYVRLLLSIDRRE-TTEAAMETVKLALEM-RDLGVVGIDLSGNPTKGEW--TTFLPALKFAREQGLQITLHCGEIP 229 (269)
Q Consensus 154 ~~~~i~~rli~~~~R~~-~~~~~~~~~~~a~~~-~~~~vvGidl~G~E~~~~~--~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (269)
.+.|+++..-+.+.-.. |++ ....++...++ ....||||+=-|-|...+- +-|...++.|++.++|+.+|.=...
T Consensus 60 ~~~Gl~~~vavGvHPr~iP~e-~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr~n 138 (254)
T COG1099 60 EKAGLKLKVAVGVHPRAIPPE-LEEVLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELARELDVPVIVHTPRRN 138 (254)
T ss_pred HhhCceeeEEeccCCCCCCch-HHHHHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCc
Confidence 35678777766665443 454 44555544443 3567999999998877554 4599999999999999999998766
Q ss_pred ChhHHHHHHh------cCCCc--ccccccCCHHHHHHHHhCC
Q 024296 230 NKEEIQSMLD------FLPQR--IGHACCFEEEEWRKLKSSK 263 (269)
Q Consensus 230 ~~e~i~~ai~------l~a~R--IGHG~~~~~~l~~~l~~~~ 263 (269)
..+-....++ +.+++ |.|- +.+.++.+.+++
T Consensus 139 K~e~t~~ildi~~~~~l~~~lvvIDH~---N~etv~~vld~e 177 (254)
T COG1099 139 KKEATSKILDILIESGLKPSLVVIDHV---NEETVDEVLDEE 177 (254)
T ss_pred chhHHHHHHHHHHHcCCChhheehhcc---cHHHHHHHHhcc
Confidence 5554433333 23333 2332 456666666654
No 89
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=87.75 E-value=19 Score=31.86 Aligned_cols=106 Identities=16% Similarity=0.019 Sum_probs=71.4
Q ss_pred CceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CC-ceeeecCCCCCh--h
Q 024296 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GL-QITLHCGEIPNK--E 232 (269)
Q Consensus 157 ~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl-~~t~HAGE~~~~--e 232 (269)
|+++.+-++..-..+++...+.++.+.+...+.|.=-|..|. ..|.+...+++..++. +. ++-+|+--+.+- .
T Consensus 125 G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~A 201 (263)
T cd07943 125 GMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDSAGA---MLPDDVRERVRALREALDPTPVGFHGHNNLGLAVA 201 (263)
T ss_pred CCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC---cCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHH
Confidence 555555443222356777777777777665555665666663 3577888888888775 65 999999887763 6
Q ss_pred HHHHHHhcCCCccccccc-----C----CHHHHHHHHhCCCc
Q 024296 233 EIQSMLDFLPQRIGHACC-----F----EEEEWRKLKSSKIP 265 (269)
Q Consensus 233 ~i~~ai~l~a~RIGHG~~-----~----~~~l~~~l~~~~I~ 265 (269)
|..+|++.|+++|.=.+. . .++++.+|...++.
T Consensus 202 N~laAi~aGa~~vd~s~~GlG~~aGN~~~E~lv~~L~~~g~~ 243 (263)
T cd07943 202 NSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLERMGIE 243 (263)
T ss_pred HHHHHHHhCCCEEEeecccccCCcCCccHHHHHHHHHhcCCC
Confidence 788899999998865542 1 24667777665543
No 90
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=87.41 E-value=2.3 Score=42.18 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=58.0
Q ss_pred CceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccccC-------CHHHHHHHH
Q 024296 188 LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF-------EEEEWRKLK 260 (269)
Q Consensus 188 ~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~-------~~~l~~~l~ 260 (269)
.+++||-+..+- ..++..+..+++.|++.|+++.+|+.-....-.+.+++..+..|.=|.++. .|++++.+.
T Consensus 212 aGA~gfKi~~d~-g~t~~~l~~aL~~A~~~gv~V~iHa~tlne~G~~e~t~~a~~g~~iH~~H~egaggghapdii~~~~ 290 (568)
T PRK13207 212 AGAIGLKLHEDW-GATPAAIDNCLSVADEYDVQVAIHTDTLNESGFVEDTIAAFKGRTIHTFHTEGAGGGHAPDIIKVAG 290 (568)
T ss_pred cCCCEEeecCCC-CCCHHHHHHHHHHHHHhCCEEEEeCCCcccchHHHHHHHhcCCCEEEEEeecCCCcCCchHHHHHhh
Confidence 367788766432 235678889999999999999999954332223456888899999999873 489999999
Q ss_pred hCCC
Q 024296 261 SSKI 264 (269)
Q Consensus 261 ~~~I 264 (269)
+.++
T Consensus 291 ~~~v 294 (568)
T PRK13207 291 EPNV 294 (568)
T ss_pred cCCC
Confidence 9886
No 91
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=87.09 E-value=5.8 Score=37.78 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceee--ecCCCC-ChhHHHHHHhcCCCc
Q 024296 168 RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITL--HCGEIP-NKEEIQSMLDFLPQR 244 (269)
Q Consensus 168 R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~--HAGE~~-~~e~i~~ai~l~a~R 244 (269)
+..+++++++.+.....+.....-|+.++|.|...-+..+.++++.+++.|+++.+ -.|... +++.+...+.+|.++
T Consensus 52 ~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~ 131 (404)
T TIGR03278 52 DFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVRE 131 (404)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCE
Confidence 44578888888887776543235677888877765557788899999999999765 233322 344455566688999
Q ss_pred ccccccC-CHHHHHH
Q 024296 245 IGHACCF-EEEEWRK 258 (269)
Q Consensus 245 IGHG~~~-~~~l~~~ 258 (269)
+-=-+.. +|++-+.
T Consensus 132 v~iSvka~dpe~h~k 146 (404)
T TIGR03278 132 VSFTVFATDPELRRE 146 (404)
T ss_pred EEEecccCCHHHHHH
Confidence 8655543 5554433
No 92
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=87.07 E-value=2.4 Score=37.82 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHcCCceeeecCCC-CChhHHHHHH-hcCC--Cc--cccccc-CCHHHHHHHHhCCCceeeC
Q 024296 205 TTFLPALKFAREQGLQITLHCGEI-PNKEEIQSML-DFLP--QR--IGHACC-FEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 205 ~~f~~~f~~ar~~gl~~t~HAGE~-~~~e~i~~ai-~l~a--~R--IGHG~~-~~~~l~~~l~~~~I~lEic 269 (269)
..|....+.|++.|+|+++|.++. .....+.+.+ ..|. .| |.|... -+++.++.++++|.-+.++
T Consensus 136 ~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~ 207 (293)
T cd00530 136 KVLRAAARAQKETGVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDDPDYLLKIAALGAYLEFD 207 (293)
T ss_pred HHHHHHHHHHHHHCCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCCHHHHHHHHhCCCEEEeC
Confidence 357788889999999999999874 1233344444 3453 33 778874 4678888899999877764
No 93
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=86.84 E-value=4.4 Score=36.08 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCC---CC--Ch----hhHHHHHHHHHHc-CCceeeecCCCCChhHHHHHHh
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPT---KG--EW----TTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLD 239 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~---~~--~~----~~f~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~ 239 (269)
.+++.+. +.|.++...|.--||+.|.-. .. ++ ....++.+.+++. ++++.+|. ..++.+..|++
T Consensus 20 ~~~~~~~---~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT---~~~~vi~~al~ 93 (257)
T TIGR01496 20 LSVDKAV---AHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDT---YRAEVARAALE 93 (257)
T ss_pred CCHHHHH---HHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeC---CCHHHHHHHHH
Confidence 4455444 444454445666677744211 11 11 2377788888887 99999998 66888899999
Q ss_pred cCCCcccccccC-CHHHHHHHHhCCCcee
Q 024296 240 FLPQRIGHACCF-EEEEWRKLKSSKIPVR 267 (269)
Q Consensus 240 l~a~RIGHG~~~-~~~l~~~l~~~~I~lE 267 (269)
.|++=|-|.... +++.++++++.+.++=
T Consensus 94 ~G~~iINsis~~~~~~~~~l~~~~~~~vV 122 (257)
T TIGR01496 94 AGADIINDVSGGQDPAMLEVAAEYGVPLV 122 (257)
T ss_pred cCCCEEEECCCCCCchhHHHHHHcCCcEE
Confidence 999989888765 7889999999887664
No 94
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=86.77 E-value=5.9 Score=35.43 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccccCCHH
Q 024296 209 PALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEE 254 (269)
Q Consensus 209 ~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~~~~ 254 (269)
.+.+.+++.|+++.++.|- .+++.+...-+.|.+++.+|+..+|+
T Consensus 102 ~i~~~~~~~~i~~~~~~g~-~~~e~l~~Lk~aG~~~v~i~~E~~~~ 146 (296)
T TIGR00433 102 AMVQIVEEMGLKTCATLGL-LDPEQAKRLKDAGLDYYNHNLDTSQE 146 (296)
T ss_pred HHHHHHHhCCCeEEecCCC-CCHHHHHHHHHcCCCEEEEcccCCHH
Confidence 3444455679999999984 45666666667899999999775444
No 95
>PRK06256 biotin synthase; Validated
Probab=86.51 E-value=6.1 Score=36.23 Aligned_cols=86 Identities=21% Similarity=0.138 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCC-CChhhHHHHHHHHHHc-CCceeeecCCCCChhHHHHHHhcCCCcc
Q 024296 168 RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTK-GEWTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRI 245 (269)
Q Consensus 168 R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~-~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l~a~RI 245 (269)
|..+++++.+.++.+.+..... +.+-.+|.+.. .+.+.+.++++.+++. ++.+.++.|- .+++.+...-+.|.+++
T Consensus 89 ~~~s~eeI~~~~~~~~~~g~~~-~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~-l~~e~l~~LkeaG~~~v 166 (336)
T PRK06256 89 AWLDIEELIEAAKEAIEEGAGT-FCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL-LTEEQAERLKEAGVDRY 166 (336)
T ss_pred cCCCHHHHHHHHHHHHHCCCCE-EEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc-CCHHHHHHHHHhCCCEE
Confidence 4467887777777666542211 22222343222 2234677788887764 6777777776 45666666556899999
Q ss_pred cccccCCHHH
Q 024296 246 GHACCFEEEE 255 (269)
Q Consensus 246 GHG~~~~~~l 255 (269)
.||+..++++
T Consensus 167 ~~~lEts~~~ 176 (336)
T PRK06256 167 NHNLETSRSY 176 (336)
T ss_pred ecCCccCHHH
Confidence 9998655443
No 96
>PRK06740 histidinol-phosphatase; Validated
Probab=86.28 E-value=18 Score=33.44 Aligned_cols=79 Identities=15% Similarity=0.210 Sum_probs=41.2
Q ss_pred cchhccccC-CCCCHHHHHHHHHHhccCCCccchhhHHHHhhcCCCHHHHHHHhHHHHHhhCCHHHHHHHHHHHHHHHHh
Q 024296 9 KVELHAHLN-GSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFAS 87 (269)
Q Consensus 9 K~eLH~HL~-Gs~~~~tl~~la~~~~~~g~~~~~~~~~~~~~~~~~l~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~ 87 (269)
|+|-|.||+ |-.|..||...+.. +..+..+.+ ...+.......-..+..-++.-++=+.-+.++++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yv~~Ai~ 72 (331)
T PRK06740 2 KVDYHIHLEEGPYSIGWLAKINEA-----LQHYEPLKE----AKHSMEWLVKTQERLQRRVKEGPYTTKWIDLYLEEALR 72 (331)
T ss_pred cceeEEeeccCccchhHHHHhhhh-----hhccCcccc----ccchHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 789999996 78888888776542 211111110 01122211111122222232222333446888888999
Q ss_pred cCCeEEEEe
Q 024296 88 ENIVYLELR 96 (269)
Q Consensus 88 dnV~Y~Elr 96 (269)
.|+..+=+.
T Consensus 73 ~G~~~ig~S 81 (331)
T PRK06740 73 KGIKEVGIV 81 (331)
T ss_pred CCCcEEEEC
Confidence 998766553
No 97
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=85.87 E-value=29 Score=34.24 Aligned_cols=135 Identities=12% Similarity=0.061 Sum_probs=90.0
Q ss_pred HHHHHHhcCCeEEEEecCCCC-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC
Q 024296 81 VVEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (269)
Q Consensus 81 ~~~~~~~dnV~Y~Elr~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (269)
.++.+..-|+..+-+-+.... | ...+.+.++.++.+.+.++.+++ .|
T Consensus 90 ~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~------------------------------~G 139 (524)
T PRK12344 90 NLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKA------------------------------HG 139 (524)
T ss_pred HHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH------------------------------cC
Confidence 345555667766666543221 1 23467889999999999987654 24
Q ss_pred ceEEEEE----EEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCCh-
Q 024296 158 IYVRLLL----SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNK- 231 (269)
Q Consensus 158 i~~rli~----~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~- 231 (269)
.++.+-. ...| .+++.+.+.++.+.+...+.+.=-|.+|.= .|.++..+++..++. ++++.+|+--+.|-
T Consensus 140 ~~v~~~~e~~~Da~r-~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~---~P~~v~~li~~l~~~~~v~i~~H~HND~GlA 215 (524)
T PRK12344 140 REVIFDAEHFFDGYK-ANPEYALATLKAAAEAGADWVVLCDTNGGT---LPHEVAEIVAEVRAAPGVPLGIHAHNDSGCA 215 (524)
T ss_pred CeEEEcccccccccc-CCHHHHHHHHHHHHhCCCCeEEEccCCCCc---CHHHHHHHHHHHHHhcCCeEEEEECCCCChH
Confidence 4444311 1123 357777788887777666667766777643 467788888877765 89999999887763
Q ss_pred -hHHHHHHhcCCCcccccc
Q 024296 232 -EEIQSMLDFLPQRIGHAC 249 (269)
Q Consensus 232 -e~i~~ai~l~a~RIGHG~ 249 (269)
-|...|++.|+++|.=-+
T Consensus 216 ~ANslaAi~aGa~~Vd~Tl 234 (524)
T PRK12344 216 VANSLAAVEAGARQVQGTI 234 (524)
T ss_pred HHHHHHHHHhCCCEEEEec
Confidence 577788889999986433
No 98
>PF08187 Tetradecapep: Myoactive tetradecapeptides family; InterPro: IPR012619 This entry consists of myoactive tetradecapeptides that are isolated from the gut of Earthworms, Eisenia foetida (Common brandling worm) and Pheretima vittata (Earthworm). These peptides were termed ETP and PTP respectively. Both peptides showed a potent excitatory action on spontaneous contractions of the anterior gut. These peptides show similarity to Molluscan tetradecapeptides and Arthropodan tridecapeptides [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0005576 extracellular region
Probab=85.64 E-value=0.24 Score=23.34 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=7.3
Q ss_pred CCCcccccc
Q 024296 241 LPQRIGHAC 249 (269)
Q Consensus 241 ~a~RIGHG~ 249 (269)
.++||.||+
T Consensus 6 ~adrishgf 14 (14)
T PF08187_consen 6 SADRISHGF 14 (14)
T ss_pred chhhhhcCC
Confidence 379999995
No 99
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=85.46 E-value=35 Score=32.61 Aligned_cols=140 Identities=11% Similarity=0.148 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCCCC-c--ccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccccc
Q 024296 73 TVTRITQEVVEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDA 149 (269)
Q Consensus 73 ~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (269)
.+.+....-++.+..-++..+-+..+-+. + ...+.|.+++++.+.+.++-+++
T Consensus 73 ~~~~~~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~------------------------ 128 (409)
T COG0119 73 ALARAIKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARD------------------------ 128 (409)
T ss_pred hhHHhHHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------
Confidence 44555566677777788888777654332 2 23458999999999999987653
Q ss_pred ccCCCCCCceEEE-EEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C--Cceeeec
Q 024296 150 CNGTRGKKIYVRL-LLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G--LQITLHC 225 (269)
Q Consensus 150 ~~~~~~~~i~~rl-i~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-g--l~~t~HA 225 (269)
.++.+++ .-++.| .+++.+.++++.+.......|.--|.+|. ..|..+..+++..++. . .++.+|+
T Consensus 129 ------~g~~~~~~~Ed~~r-t~~~~l~~~~~~~~~~ga~~i~l~DTvG~---~~P~~~~~~i~~l~~~v~~~~~l~~H~ 198 (409)
T COG0119 129 ------HGLEVRFSAEDATR-TDPEFLAEVVKAAIEAGADRINLPDTVGV---ATPNEVADIIEALKANVPNKVILSVHC 198 (409)
T ss_pred ------cCCeEEEEeecccc-CCHHHHHHHHHHHHHcCCcEEEECCCcCc---cCHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 4566665 444444 46888888888888654556777777763 3567888888888875 3 9999999
Q ss_pred CCCCCh--hHHHHHHhcCCCccc
Q 024296 226 GEIPNK--EEIQSMLDFLPQRIG 246 (269)
Q Consensus 226 GE~~~~--e~i~~ai~l~a~RIG 246 (269)
--..|- .|...|++-|+++|.
T Consensus 199 HnD~G~AvANslaAv~aGa~~v~ 221 (409)
T COG0119 199 HNDLGMAVANSLAAVEAGADQVE 221 (409)
T ss_pred cCCcchHHHHHHHHHHcCCcEEE
Confidence 888763 577788889999875
No 100
>PRK00915 2-isopropylmalate synthase; Validated
Probab=85.28 E-value=18 Score=35.61 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=84.3
Q ss_pred hcCCeEEEEecCCCC-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCceEEEE
Q 024296 87 SENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLL 163 (269)
Q Consensus 87 ~dnV~Y~Elr~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli 163 (269)
.-++..+-+..+... + ..-+.+.+++++.+.+.++.+++ .|..+.+-
T Consensus 90 ~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~------------------------------~g~~v~f~ 139 (513)
T PRK00915 90 PAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARS------------------------------YTDDVEFS 139 (513)
T ss_pred cCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------CCCeEEEE
Confidence 446655555433211 1 23467899999999999987653 24444322
Q ss_pred E-EEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C----CceeeecCCCCCh--hHHH
Q 024296 164 L-SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G----LQITLHCGEIPNK--EEIQ 235 (269)
Q Consensus 164 ~-~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-g----l~~t~HAGE~~~~--e~i~ 235 (269)
. ...| .+++.+.+.++.+.+...+.|.=-|.+|.= .|.++..+++..++. + +++-+|+--+.|- .|..
T Consensus 140 ~ed~~r-~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~---~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANsl 215 (513)
T PRK00915 140 AEDATR-TDLDFLCRVVEAAIDAGATTINIPDTVGYT---TPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSL 215 (513)
T ss_pred eCCCCC-CCHHHHHHHHHHHHHcCCCEEEEccCCCCC---CHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHH
Confidence 2 2233 467888888888887655556666666633 467888888888765 2 8999999887763 5777
Q ss_pred HHHhcCCCccc
Q 024296 236 SMLDFLPQRIG 246 (269)
Q Consensus 236 ~ai~l~a~RIG 246 (269)
.|++.|+++|.
T Consensus 216 aAv~aGa~~Vd 226 (513)
T PRK00915 216 AAVEAGARQVE 226 (513)
T ss_pred HHHHhCCCEEE
Confidence 88889999984
No 101
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=85.19 E-value=40 Score=33.08 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 024296 76 RITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (269)
Q Consensus 76 ~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (269)
.++...++.+++.|+-.+-+.. |- +. ++.+..+++.+++
T Consensus 97 dvv~~fv~~a~~~Gidi~RIfd-~l-------nd---v~nl~~ai~~vk~------------------------------ 135 (499)
T PRK12330 97 EVVDRFVEKSAENGMDVFRVFD-AL-------ND---PRNLEHAMKAVKK------------------------------ 135 (499)
T ss_pred hHHHHHHHHHHHcCCCEEEEEe-cC-------Ch---HHHHHHHHHHHHH------------------------------
Confidence 4567788888999999865533 22 11 2333333433321
Q ss_pred CCceE--EEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc---CCceeeecCCCCC
Q 024296 156 KKIYV--RLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---GLQITLHCGEIPN 230 (269)
Q Consensus 156 ~~i~~--rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~---gl~~t~HAGE~~~ 230 (269)
.|..+ .+.+++.-.++++...+.++.+.+..-+.|.=-|.+|-= .|.....++..+++. ++++-+|+--+.|
T Consensus 136 ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll---~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~G 212 (499)
T PRK12330 136 VGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMAALL---KPQPAYDIVKGIKEACGEDTRINLHCHSTTG 212 (499)
T ss_pred hCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCC---CHHHHHHHHHHHHHhCCCCCeEEEEeCCCCC
Confidence 12233 333433444567766666666665544445555777643 456677777777765 6999999988876
Q ss_pred h--hHHHHHHhcCCCcccccccC------C---HHHHHHHHhCCCc
Q 024296 231 K--EEIQSMLDFLPQRIGHACCF------E---EEEWRKLKSSKIP 265 (269)
Q Consensus 231 ~--e~i~~ai~l~a~RIGHG~~~------~---~~l~~~l~~~~I~ 265 (269)
- .|...|++.|+++|.=.+.- + ++++..|...++.
T Consensus 213 lA~An~laAieAGad~vDtai~Glg~~aGn~atE~vv~~L~~~g~~ 258 (499)
T PRK12330 213 VTLVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESLVEMLEGTGYT 258 (499)
T ss_pred cHHHHHHHHHHcCCCEEEeecccccccccchhHHHHHHHHHhcCCC
Confidence 3 67889999999998766531 2 3566667665543
No 102
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=84.12 E-value=3.3 Score=36.41 Aligned_cols=64 Identities=27% Similarity=0.497 Sum_probs=48.6
Q ss_pred HHHHHHHHhhCCCceE-------------EEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCC
Q 024296 176 METVKLALEMRDLGVV-------------GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP 242 (269)
Q Consensus 176 ~~~~~~a~~~~~~~vv-------------Gidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a 242 (269)
.++++.|.+.+|+.++ |+|+.++. ....++.+..++.|+++++-. ..+++.|..|.++|+
T Consensus 76 ~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~-----~~l~~~i~~L~~~gIrVSLFi--dP~~~qi~~A~~~GA 148 (239)
T PRK05265 76 EEMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQF-----DKLKPAIARLKDAGIRVSLFI--DPDPEQIEAAAEVGA 148 (239)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCH-----HHHHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHhCc
Confidence 4688899998876544 55555433 456778889999999999888 245688888888999
Q ss_pred Cccc
Q 024296 243 QRIG 246 (269)
Q Consensus 243 ~RIG 246 (269)
+||.
T Consensus 149 d~VE 152 (239)
T PRK05265 149 DRIE 152 (239)
T ss_pred CEEE
Confidence 9985
No 103
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=83.53 E-value=9.2 Score=33.51 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=51.3
Q ss_pred CCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCChhHHHHHHhcCCCcccccccC--CHHHHHHHHh
Q 024296 187 DLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKS 261 (269)
Q Consensus 187 ~~~vvGidl~G~E~~~~~~~f~~~f~~ar~-~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~~~l~~~l~~ 261 (269)
-+.+.=+||.+.+... ..+ ++++...+ .++|+.+=.|= .+.+.+..++.+|++|++-|..+ +|++++.+.+
T Consensus 46 ~~~l~ivDLd~~~g~~--~n~-~~i~~i~~~~~~pv~vgGGi-rs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~ 119 (241)
T PRK14024 46 AEWIHLVDLDAAFGRG--SNR-ELLAEVVGKLDVKVELSGGI-RDDESLEAALATGCARVNIGTAALENPEWCARVIA 119 (241)
T ss_pred CCEEEEEeccccCCCC--ccH-HHHHHHHHHcCCCEEEcCCC-CCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHH
Confidence 3569999999876322 333 66655544 48898877665 46788999999999999999875 6876666553
No 104
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=83.25 E-value=3.3 Score=40.88 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=48.2
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCChhHHH---HHHhc---------CCCcccccccCCHHHHHHHHhCCCceee
Q 024296 203 EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQ---SMLDF---------LPQRIGHACCFEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~---~ai~l---------~a~RIGHG~~~~~~l~~~l~~~~I~lEi 268 (269)
+.++|.++.+.|.+.|+++.+|| -|+..|. ++.+- ...||-|.-.+.|+.++++++-+|.+-|
T Consensus 319 ~~e~l~~~v~~a~~~gl~v~vHA---iGD~Av~~~LdafE~~~~~~~~~~~r~rieH~~~v~~~~i~R~~~Lgv~~sv 393 (535)
T COG1574 319 TEEELEELVRAADERGLPVAVHA---IGDGAVDAALDAFEKARKKNGLKGLRHRIEHAELVSPDQIERFAKLGVIASV 393 (535)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEE---echHHHHHHHHHHHHHhhhcCCccCCceeeeeeecCHhHHHHHHhcCceEee
Confidence 45789999999999999999999 5554443 33331 1278888877889999999998887654
No 105
>PRK06801 hypothetical protein; Provisional
Probab=82.61 E-value=16 Score=33.10 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHH-HHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccc
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 249 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~ 249 (269)
+.+.+...++.|.+.+.+.++.+.-..... .+...+.++.. .|++.++|+.+|.--....+.+..|++.|.+-|----
T Consensus 27 n~e~~~avi~AAe~~~~PvIl~~~~~~~~~-~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~ 105 (286)
T PRK06801 27 DSHFLRALFAAAKQERSPFIINIAEVHFKY-ISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDG 105 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEeCcchhhc-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcC
Confidence 688899999999998887777664332211 23455666555 4556799999999887778999999998765443211
Q ss_pred -cCC--------HHHHHHHHhCCCceee
Q 024296 250 -CFE--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 250 -~~~--------~~l~~~l~~~~I~lEi 268 (269)
.+. -++.++....++.+|.
T Consensus 106 S~l~~eeNi~~t~~v~~~a~~~gv~VE~ 133 (286)
T PRK06801 106 STLEYEENVRQTREVVKMCHAVGVSVEA 133 (286)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEe
Confidence 122 1367788888988864
No 106
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=82.47 E-value=22 Score=34.90 Aligned_cols=109 Identities=11% Similarity=0.100 Sum_probs=76.4
Q ss_pred cCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCce-EEEEE-EEeCCCCHHHHHHHHHH
Q 024296 104 SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIY-VRLLL-SIDRRETTEAAMETVKL 181 (269)
Q Consensus 104 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~rli~-~~~R~~~~~~~~~~~~~ 181 (269)
..+.+.+++++.+.+.++.+++ .|+. +.+-. ...| .+++.+.+.++.
T Consensus 199 kl~~s~ee~l~~~~~~V~~Ak~------------------------------~G~~~v~f~~EDa~R-td~efl~~~~~~ 247 (503)
T PLN03228 199 KLKKTKEEVIEMAVSSIRYAKS------------------------------LGFHDIQFGCEDGGR-SDKEFLCKILGE 247 (503)
T ss_pred HhCCCHHHHHHHHHHHHHHHHH------------------------------cCCceEEeccccccc-cCHHHHHHHHHH
Confidence 4468999999999999987754 1322 33222 3334 357777888888
Q ss_pred HHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-----CCceeeecCCCCCh--hHHHHHHhcCCCccc
Q 024296 182 ALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQRIG 246 (269)
Q Consensus 182 a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-----gl~~t~HAGE~~~~--e~i~~ai~l~a~RIG 246 (269)
+.+...+.|.=-|.+|-= .|.++..+++..++. ++++-+|+--+.|- -|..+|++.|+++|.
T Consensus 248 a~~~Gad~I~l~DTvG~~---tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd 316 (503)
T PLN03228 248 AIKAGATSVGIADTVGIN---MPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQVE 316 (503)
T ss_pred HHhcCCCEEEEecCCCCC---CHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEEE
Confidence 887765656666666633 466777778777764 48899999888763 577888889999985
No 107
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=81.89 E-value=12 Score=30.05 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=49.2
Q ss_pred CceEEEecCCCCCCCChhhHHHHHHHHHHc--CCceeeecCCCC-ChhHHHHHHhcCCCcccccccC-CHHHHHH
Q 024296 188 LGVVGIDLSGNPTKGEWTTFLPALKFAREQ--GLQITLHCGEIP-NKEEIQSMLDFLPQRIGHACCF-EEEEWRK 258 (269)
Q Consensus 188 ~~vvGidl~G~E~~~~~~~f~~~f~~ar~~--gl~~t~HAGE~~-~~e~i~~ai~l~a~RIGHG~~~-~~~l~~~ 258 (269)
.++..+-+.|.|.-..+ .+.++++.+++. +++++++..=.. +++.+....+.|..+|..|+.. +++..+.
T Consensus 43 ~~~~~i~~~ggep~~~~-~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~ 116 (204)
T cd01335 43 RGVEVVILTGGEPLLYP-ELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADK 116 (204)
T ss_pred cCceEEEEeCCcCCccH-hHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHH
Confidence 34666666776665544 788899999988 899999875444 4555555556899999999875 4544333
No 108
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=81.67 E-value=61 Score=32.54 Aligned_cols=144 Identities=12% Similarity=0.090 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCC
Q 024296 77 ITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (269)
Q Consensus 77 ~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (269)
++...++.+++.|+..+-+..... . ++.+..+++.+++ .
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~ln--------d---~~~~~~ai~~ak~------------------------------~ 136 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDAMN--------D---PRNLETALKAVRK------------------------------V 136 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeeeCC--------c---HHHHHHHHHHHHH------------------------------c
Confidence 567788888999998866643211 1 3455556655432 2
Q ss_pred CceE--EEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCCh--
Q 024296 157 KIYV--RLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNK-- 231 (269)
Q Consensus 157 ~i~~--rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~-- 231 (269)
|..+ .+-++..-.++.+...+.++.+.+..-+.++=-|.+|-= .|.....+++..++. ++++-+|+--+.|-
T Consensus 137 G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l---~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~ 213 (593)
T PRK14040 137 GAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLL---KPYAAYELVSRIKKRVDVPLHLHCHATTGLST 213 (593)
T ss_pred CCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCc---CHHHHHHHHHHHHHhcCCeEEEEECCCCchHH
Confidence 3333 233333333455656666666655544556666777743 456667777777664 79999999888763
Q ss_pred hHHHHHHhcCCCcccccccC------C---HHHHHHHHhCCC
Q 024296 232 EEIQSMLDFLPQRIGHACCF------E---EEEWRKLKSSKI 264 (269)
Q Consensus 232 e~i~~ai~l~a~RIGHG~~~------~---~~l~~~l~~~~I 264 (269)
.|...|++.|++.|.=.+.- + +.++..|...++
T Consensus 214 An~laAieAGa~~vD~ai~glG~~~Gn~~le~vv~~L~~~~~ 255 (593)
T PRK14040 214 ATLLKAIEAGIDGVDTAISSMSMTYGHSATETLVATLEGTER 255 (593)
T ss_pred HHHHHHHHcCCCEEEeccccccccccchhHHHHHHHHHhcCC
Confidence 67788999999998755531 2 345666665443
No 109
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=81.41 E-value=30 Score=33.88 Aligned_cols=109 Identities=12% Similarity=0.074 Sum_probs=75.1
Q ss_pred cCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCceEEEEE-EEeCCCCHHHHHHHHHHH
Q 024296 104 SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLL-SIDRRETTEAAMETVKLA 182 (269)
Q Consensus 104 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~-~~~R~~~~~~~~~~~~~a 182 (269)
.-+.|.+++++.+.+.++.+++ .+..+.+-. ...| .+++.+.++++.+
T Consensus 107 ~l~~s~~e~l~~~~~~v~~a~~------------------------------~g~~v~f~~Ed~~r-~d~~~l~~~~~~~ 155 (494)
T TIGR00973 107 KLKMTRDEVLERAVGMVKYAKN------------------------------FTDDVEFSCEDAGR-TEIPFLARIVEAA 155 (494)
T ss_pred HhCCCHHHHHHHHHHHHHHHHH------------------------------cCCeEEEEcCCCCC-CCHHHHHHHHHHH
Confidence 4468899999999999987654 233332221 2223 3678888888888
Q ss_pred HhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-----CCceeeecCCCCCh--hHHHHHHhcCCCccc
Q 024296 183 LEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQRIG 246 (269)
Q Consensus 183 ~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-----gl~~t~HAGE~~~~--e~i~~ai~l~a~RIG 246 (269)
.+...+.|.=-|.+|. ..|..+..+++..++. .+++.+|+--+.+- .|...|++.|+++|.
T Consensus 156 ~~~Ga~~i~l~DTvG~---~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd 223 (494)
T TIGR00973 156 INAGATTINIPDTVGY---ALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVE 223 (494)
T ss_pred HHcCCCEEEeCCCCCC---CCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEE
Confidence 8765554555555653 3467788888877764 47799999877653 577788889999984
No 110
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=81.32 E-value=36 Score=29.62 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=48.5
Q ss_pred CceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceE---EEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhH
Q 024296 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVV---GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEE 233 (269)
Q Consensus 157 ~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vv---Gidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~ 233 (269)
++.+++|+-..- ++.++.....+.+.+..-+.|. |++ ..+...+....+.+.-...+++.+=-| ..+.+.
T Consensus 121 ~~~lKvIlEt~~-L~~e~i~~a~~~~~~agadfIKTsTG~~-----~~gat~~~v~~m~~~~~~~~~IKasGG-Irt~~~ 193 (221)
T PRK00507 121 GAVLKVIIETCL-LTDEEKVKACEIAKEAGADFVKTSTGFS-----TGGATVEDVKLMRETVGPRVGVKASGG-IRTLED 193 (221)
T ss_pred CceEEEEeecCc-CCHHHHHHHHHHHHHhCCCEEEcCCCCC-----CCCCCHHHHHHHHHHhCCCceEEeeCC-cCCHHH
Confidence 567888886543 4566667777777776544222 332 112223333333333223355544333 345777
Q ss_pred HHHHHhcCCCccccc
Q 024296 234 IQSMLDFLPQRIGHA 248 (269)
Q Consensus 234 i~~ai~l~a~RIGHG 248 (269)
..+.+++|++|||=.
T Consensus 194 a~~~i~aGA~riGtS 208 (221)
T PRK00507 194 ALAMIEAGATRLGTS 208 (221)
T ss_pred HHHHHHcCcceEccC
Confidence 888888999999853
No 111
>PRK10812 putative DNAse; Provisional
Probab=81.11 E-value=6.7 Score=35.00 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHcCCceeeecCCCCChhHHHHHHh-cCCC---cccccccCCHHHHHHHHhCCCceee
Q 024296 206 TFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FLPQ---RIGHACCFEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 206 ~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~-l~a~---RIGHG~~~~~~l~~~l~~~~I~lEi 268 (269)
-|....+.|++.|+|+.+|.-.. .+.+.+.+. .+.. =|.|++.-+++.++.+.+.|.-+-+
T Consensus 112 vf~~ql~lA~e~~~Pv~iH~r~a--~~~~l~iL~~~~~~~~~~v~H~fsG~~~~a~~~~~~G~~is~ 176 (265)
T PRK10812 112 SFRHHIQIGRELNKPVIVHTRDA--RADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISF 176 (265)
T ss_pred HHHHHHHHHHHhCCCeEEEeeCc--hHHHHHHHHhhcCCCCCEEEEeecCCHHHHHHHHHCCCEEEE
Confidence 37777888889999999998653 245666665 4443 2788886677888888888766554
No 112
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=79.95 E-value=50 Score=32.60 Aligned_cols=134 Identities=8% Similarity=-0.017 Sum_probs=89.4
Q ss_pred HHHHHhcCCeEEEEecC--CCCc-ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc
Q 024296 82 VEDFASENIVYLELRTT--PKRN-ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (269)
Q Consensus 82 ~~~~~~dnV~Y~Elr~~--p~~~-~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (269)
++.+..-++..+-+-.+ +... ..-+.+.++.++.+.+.++-+++ .+.
T Consensus 87 ~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~------------------------------~g~ 136 (526)
T TIGR00977 87 LQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKR------------------------------QGD 136 (526)
T ss_pred HHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------cCC
Confidence 44445556655555433 2111 23467899999999999987643 345
Q ss_pred eEEEEEE----EeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C-CceeeecCCCCCh-
Q 024296 159 YVRLLLS----IDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G-LQITLHCGEIPNK- 231 (269)
Q Consensus 159 ~~rli~~----~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-g-l~~t~HAGE~~~~- 231 (269)
.+.+... ..| .+++.+.++++.+.+...+.++=-|.+|. ..|.++..+++..++. + .++.+|+-=..|-
T Consensus 137 ~V~~~~e~f~D~~r-~~~~~l~~~~~~a~~aGad~i~i~DTvG~---~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlA 212 (526)
T TIGR00977 137 EVIYDAEHFFDGYK-ANPEYALATLATAQQAGADWLVLCDTNGG---TLPHEISEITTKVKRSLKQPQLGIHAHNDSGTA 212 (526)
T ss_pred eEEEEeeeeeeccc-CCHHHHHHHHHHHHhCCCCeEEEecCCCC---cCHHHHHHHHHHHHHhCCCCEEEEEECCCCChH
Confidence 5554332 124 47888899999888766666776788873 3577888888888775 4 4589999776653
Q ss_pred -hHHHHHHhcCCCcccccc
Q 024296 232 -EEIQSMLDFLPQRIGHAC 249 (269)
Q Consensus 232 -e~i~~ai~l~a~RIGHG~ 249 (269)
-|...|++.|+++|.=-+
T Consensus 213 vANslaAv~AGA~~Vd~Ti 231 (526)
T TIGR00977 213 VANSLLAVEAGATMVQGTI 231 (526)
T ss_pred HHHHHHHHHhCCCEEEEec
Confidence 567788889999975433
No 113
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=79.21 E-value=18 Score=33.01 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=48.7
Q ss_pred CCCceEEEecC-CCCCC--CChhhHHHHHHHHHHcCCceeeecCCCCC-hhHHHHHHhcCCCcccccccCCH--------
Q 024296 186 RDLGVVGIDLS-GNPTK--GEWTTFLPALKFAREQGLQITLHCGEIPN-KEEIQSMLDFLPQRIGHACCFEE-------- 253 (269)
Q Consensus 186 ~~~~vvGidl~-G~E~~--~~~~~f~~~f~~ar~~gl~~t~HAGE~~~-~e~i~~ai~l~a~RIGHG~~~~~-------- 253 (269)
..++++||-.. ..+.. ..+..+...++.+++.|+++.+|+++... .+.+...++.| .-+-|-+..++
T Consensus 127 ~~~gi~gik~~~~~~~~~~~~~~~l~~~~~~a~~~~~pi~vH~~~~~~~~~~~~~~l~~g-~~~~H~~~g~~~~~~~~~~ 205 (338)
T cd01307 127 YPDVIVGLKARASKSVVGEWGIKPLELAKKIAKEADLPLMVHIGSPPPILDEVVPLLRRG-DVLTHCFNGKPNGIVDEEG 205 (338)
T ss_pred CcCcEEEEEEEeecccccccCCcHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHhcCC-CEEEeccCCCCCCCCCCCC
Confidence 44578887663 11111 12344677888888999999999998653 23344443333 33556654321
Q ss_pred ---HHHHHHHhCCCceee
Q 024296 254 ---EEWRKLKSSKIPVRI 268 (269)
Q Consensus 254 ---~l~~~l~~~~I~lEi 268 (269)
+.++.++++|+-+-+
T Consensus 206 ~~~~~~~~~~~~G~~~d~ 223 (338)
T cd01307 206 EVLPLVRRARERGVIFDV 223 (338)
T ss_pred cHHHHHHHHHhCCEEEEe
Confidence 566777777766543
No 114
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=78.88 E-value=10 Score=34.87 Aligned_cols=85 Identities=21% Similarity=0.309 Sum_probs=55.6
Q ss_pred HHhhCCCceEEEec-CCCCCCCCh--hhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHh-cC-CCcccccccCC----
Q 024296 182 ALEMRDLGVVGIDL-SGNPTKGEW--TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FL-PQRIGHACCFE---- 252 (269)
Q Consensus 182 a~~~~~~~vvGidl-~G~E~~~~~--~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~-l~-a~RIGHG~~~~---- 252 (269)
|++..++.+||+-+ ++.+..+.+ .......+.|+..++|+-+|.|| +|.---+.++ |+ -|=|-|.++-.
T Consensus 146 a~reh~d~ivGlKvR~s~~~~g~~GitPl~la~~ia~~~klPlmvHige--Pp~~~dEvlerL~~GDIitHcfngkpn~~ 223 (386)
T COG3964 146 AFREHRDVIVGLKVRVSTEDIGEYGITPLTLALRIANDLKLPLMVHIGE--PPVLMDEVLERLRRGDIITHCFNGKPNTI 223 (386)
T ss_pred HHHhCcCcEEEEEEEeeeccccccCCchHHHHHHHHhhcCCceEEecCC--CCccHHHHHHhccCCceeeeeccCCCCCc
Confidence 33334557999988 455554432 44555677888889999999999 3332234444 43 37788887521
Q ss_pred --H-----HHHHHHHhCCCceee
Q 024296 253 --E-----EEWRKLKSSKIPVRI 268 (269)
Q Consensus 253 --~-----~l~~~l~~~~I~lEi 268 (269)
+ ..+++.++|||-+.+
T Consensus 224 l~~dg~vr~~vrra~erGV~fD~ 246 (386)
T COG3964 224 LTDDGVVRAEVRRARERGVIFDA 246 (386)
T ss_pred cccchhHHHHHHHHHhcceEEEc
Confidence 1 268899999988764
No 115
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=78.03 E-value=3.6 Score=38.24 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCceeeecCCCCChhHHHHHH-hcCCC-cccccccCCHHHHHHHHhCCCceeeC
Q 024296 207 FLPALKFAREQGLQITLHCGEIPNKEEIQSML-DFLPQ-RIGHACCFEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 207 f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai-~l~a~-RIGHG~~~~~~l~~~l~~~~I~lEic 269 (269)
+..++..++ ..+++.+|+.+....+.+.++. ++|.+ .|.|+... +.+++.|++.++++-+|
T Consensus 182 l~~l~~~~~-~~~~v~vHa~~~~~i~~~l~~~~e~g~~~~i~H~~~~-~~~~~~la~~gv~v~~~ 244 (359)
T cd01309 182 LEALLPVLK-GEIPVRIHAHRADDILTAIRIAKEFGIKITIEHGAEG-YKLADELAKHGIPVIYG 244 (359)
T ss_pred HHHHHHHHc-CCeeEEEEeCCHHHHHHHHHHHHHcCCCEEEECchhH-HHHHHHHHHcCCCEEEC
Confidence 333444333 3399999998644333333332 36776 89999877 77889999999988654
No 116
>PRK08508 biotin synthase; Provisional
Probab=77.85 E-value=18 Score=32.43 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCC-CC--CCCChhhHHHHHHHHHHcCCceeeec--CCCCChhHHHHHHhcCCCc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSG-NP--TKGEWTTFLPALKFAREQGLQITLHC--GEIPNKEEIQSMLDFLPQR 244 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G-~E--~~~~~~~f~~~f~~ar~~gl~~t~HA--GE~~~~e~i~~ai~l~a~R 244 (269)
.+++++.+.++.+.+. ++..|-+++ .+ .....+.+.++++.+|+.+..+.+|+ |.. +.+.+...-+.|++|
T Consensus 40 ~s~eeI~~~a~~a~~~---g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~-~~e~l~~Lk~aGld~ 115 (279)
T PRK08508 40 KDIEQIVQEAKMAKAN---GALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTA-SVEQLKELKKAGIFS 115 (279)
T ss_pred CCHHHHHHHHHHHHHC---CCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCC-CHHHHHHHHHcCCCE
Confidence 5788877777766554 344444431 11 11244667889999998876666665 443 355555555689999
Q ss_pred cccccc
Q 024296 245 IGHACC 250 (269)
Q Consensus 245 IGHG~~ 250 (269)
+.|++.
T Consensus 116 ~~~~lE 121 (279)
T PRK08508 116 YNHNLE 121 (279)
T ss_pred Eccccc
Confidence 999964
No 117
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=77.60 E-value=8.9 Score=36.02 Aligned_cols=61 Identities=13% Similarity=0.075 Sum_probs=45.9
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccccCCHHHHHHHHhCCCcee
Q 024296 203 EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVR 267 (269)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~~~~l~~~l~~~~I~lE 267 (269)
..+....+++.|++.|+++..|+.+ +++.+..+...|++=+.|. .+.+..+.++++++.+-
T Consensus 212 ~~e~i~~~v~~A~~~g~~v~sH~~~--~~~~i~~a~~~Gv~~~e~~--~~~e~~~~~~~~g~~v~ 272 (383)
T PRK15446 212 APPNRRAIAALARARGIPLASHDDD--TPEHVAEAHALGVAIAEFP--TTLEAARAARALGMSVL 272 (383)
T ss_pred CHHHHHHHHHHHHHCCCceeecCCC--CHHHHHHHHHcCCceeeCC--CcHHHHHHHHHCCCEEE
Confidence 4467888999999999999999987 4567888888777666552 34566777777777654
No 118
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=77.49 E-value=29 Score=29.98 Aligned_cols=99 Identities=16% Similarity=0.080 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhH-HHHHHHHHHcCCceeeecCCCCChhHHHHHHh--------
Q 024296 169 RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTF-LPALKFAREQGLQITLHCGEIPNKEEIQSMLD-------- 239 (269)
Q Consensus 169 ~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f-~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~-------- 239 (269)
..+++++.+.+..-..+....=-||-++|.|.--. .+| .++++.+|+.|+++.+.-.=..+++.+.+++.
T Consensus 18 ~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq-~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~D 96 (213)
T PRK10076 18 DITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQ-AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFD 96 (213)
T ss_pred ccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcC-HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEe
Confidence 34566655554433333211123777788886544 345 68899999999999998422233443333322
Q ss_pred c-CCCcccc----cccCC--HHHHHHHHhCCCceee
Q 024296 240 F-LPQRIGH----ACCFE--EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 240 l-~a~RIGH----G~~~~--~~l~~~l~~~~I~lEi 268 (269)
+ +.+.=-| |.... -+.++++.+.++.+||
T Consensus 97 iK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 97 LKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred eccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 1 1121122 21111 1457889999999886
No 119
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=77.46 E-value=9.1 Score=35.90 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccccCCHHHHHHHHhCCCceeeC
Q 024296 204 WTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 204 ~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~~~~l~~~l~~~~I~lEic 269 (269)
.+....+.+.|++.|++++.|+.| +++.+..+...|..=+.|. +..+..+.++++|+.+-.|
T Consensus 208 ~e~i~~~v~~A~~~G~~v~sH~~~--~~e~i~~a~~~Gv~~~E~~--~t~e~a~~~~~~G~~v~~~ 269 (376)
T TIGR02318 208 LANRSEIAALARARGIPLASHDDD--TPEHVAEAHDLGVTISEFP--TTLEAAKEARSLGMQILMG 269 (376)
T ss_pred HHHHHHHHHHHHHCCCeEEEecCC--CHHHHHHHHHCCCChhccC--CCHHHHHHHHHcCCeEEEC
Confidence 466788899999999999999987 4577888888776555554 5667788888888886654
No 120
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=77.33 E-value=46 Score=28.61 Aligned_cols=95 Identities=19% Similarity=0.239 Sum_probs=67.7
Q ss_pred EEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCC
Q 024296 163 LLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP 242 (269)
Q Consensus 163 i~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a 242 (269)
++-+.|..+++++.+.++.+.+..- .++=|.+.. +.-.+.++.+++..=.+.+=||=..+++.++++++.|+
T Consensus 10 liaVlr~~~~e~a~~~~~al~~~Gi-~~iEit~~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA 81 (204)
T TIGR01182 10 IVPVIRIDDVDDALPLAKALIEGGL-RVLEVTLRT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA 81 (204)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCC-CEEEEeCCC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC
Confidence 5667899999999888887765321 144444432 22444566665543257788888889999999999999
Q ss_pred CcccccccCCHHHHHHHHhCCCce
Q 024296 243 QRIGHACCFEEEEWRKLKSSKIPV 266 (269)
Q Consensus 243 ~RIGHG~~~~~~l~~~l~~~~I~l 266 (269)
+=|= .-..++++++..++++|+.
T Consensus 82 ~Fiv-sP~~~~~v~~~~~~~~i~~ 104 (204)
T TIGR01182 82 QFIV-SPGLTPELAKHAQDHGIPI 104 (204)
T ss_pred CEEE-CCCCCHHHHHHHHHcCCcE
Confidence 8872 1135899999999999874
No 121
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=75.65 E-value=9.1 Score=33.69 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=46.9
Q ss_pred HHHHHHHHhhCCCceE-------------EEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCC
Q 024296 176 METVKLALEMRDLGVV-------------GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP 242 (269)
Q Consensus 176 ~~~~~~a~~~~~~~vv-------------Gidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a 242 (269)
.++++.|.+.+|+.++ |+|+.++. ....++.+..++.|+++++-.- ..++.|..|-+.|+
T Consensus 73 ~emi~ia~~vkP~~vtLVPEkr~ElTTegGldv~~~~-----~~l~~~i~~l~~~gI~VSLFiD--P~~~qi~~A~~~GA 145 (237)
T TIGR00559 73 EEMIRIAEEIKPEQVTLVPEARDEVTTEGGLDVARLK-----DKLCELVKRFHAAGIEVSLFID--ADKDQISAAAEVGA 145 (237)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCccCCcCchhhhCH-----HHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCc
Confidence 4788899888876544 55555433 3467788889999999998852 24577888888899
Q ss_pred Cccc
Q 024296 243 QRIG 246 (269)
Q Consensus 243 ~RIG 246 (269)
+||.
T Consensus 146 d~VE 149 (237)
T TIGR00559 146 DRIE 149 (237)
T ss_pred CEEE
Confidence 9885
No 122
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=75.39 E-value=33 Score=30.97 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCC-CChhhHHHHHH-HHHHcCCceeeecCCCCChhHHHHHHhcCCCcccc-
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTK-GEWTTFLPALK-FAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH- 247 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~-~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGH- 247 (269)
+.+.+...++.|.+.+.+.+..+.-. +.. .+.+.+.++.. .|++.++|+.+|.--..+.+.|..|++.|-+=|=-
T Consensus 22 n~e~~~avi~AAe~~~sPvIi~~~~~--~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD 99 (276)
T cd00947 22 NLETLKAILEAAEETRSPVILQISEG--AIKYAGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGFSSVMID 99 (276)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcc--hhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEeC
Confidence 47888999999988887777666332 222 23456777665 45556999999998877889999998866321100
Q ss_pred cccCC--------HHHHHHHHhCCCceee
Q 024296 248 ACCFE--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 248 G~~~~--------~~l~~~l~~~~I~lEi 268 (269)
|-.++ -++.++....||.+|.
T Consensus 100 ~S~l~~eeNi~~t~~vv~~ah~~gv~VEa 128 (276)
T cd00947 100 GSHLPFEENVAKTKEVVELAHAYGVSVEA 128 (276)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 11111 1378888999999984
No 123
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=75.23 E-value=44 Score=27.36 Aligned_cols=128 Identities=17% Similarity=0.137 Sum_probs=70.5
Q ss_pred HHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCceEE
Q 024296 82 VEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVR 161 (269)
Q Consensus 82 ~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r 161 (269)
++.+++-|..++|++..+..... ...+.++.+.+.++ +.|+.+-
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~---~~~~~~~~~~~~~~---------------------------------~~gl~i~ 44 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWD---EKDDEAEELRRLLE---------------------------------DYGLKIA 44 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHT---HHHHHHHHHHHHHH---------------------------------HTTCEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccc---cchHHHHHHHHHHH---------------------------------HcCCeEE
Confidence 45678889999999986543110 00223444444333 3477766
Q ss_pred EEEEEeCCCC---------------HHHHHHHHHHHHhhCCCceEEEecC--CCCCCCCh--------hhHHHHHHHHHH
Q 024296 162 LLLSIDRRET---------------TEAAMETVKLALEMRDLGVVGIDLS--GNPTKGEW--------TTFLPALKFARE 216 (269)
Q Consensus 162 li~~~~R~~~---------------~~~~~~~~~~a~~~~~~~vvGidl~--G~E~~~~~--------~~f~~~f~~ar~ 216 (269)
.+....+... .+...+.++.|..+..+ .+.+... +....... +.+..+...|++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~-~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~ 123 (213)
T PF01261_consen 45 SLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAK-YIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEE 123 (213)
T ss_dssp EEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBS-EEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCC-ceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 6555555433 45566777777777544 4444433 12212111 234556667778
Q ss_pred cCCceeeecCCCCC---h---hHHHHHHh-cCCCccc
Q 024296 217 QGLQITLHCGEIPN---K---EEIQSMLD-FLPQRIG 246 (269)
Q Consensus 217 ~gl~~t~HAGE~~~---~---e~i~~ai~-l~a~RIG 246 (269)
.|+.+.++-.-... . +.+.+.++ .+.+++|
T Consensus 124 ~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (213)
T PF01261_consen 124 YGVRIALENHPGPFSETPFSVEEIYRLLEEVDSPNVG 160 (213)
T ss_dssp HTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTTEE
T ss_pred hcceEEEecccCccccchhhHHHHHHHHhhcCCCcce
Confidence 89999888543332 2 56666666 5666653
No 124
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=74.82 E-value=9.9 Score=33.39 Aligned_cols=64 Identities=23% Similarity=0.524 Sum_probs=47.1
Q ss_pred HHHHHHHHhhCCCceE-------------EEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCC
Q 024296 176 METVKLALEMRDLGVV-------------GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP 242 (269)
Q Consensus 176 ~~~~~~a~~~~~~~vv-------------Gidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a 242 (269)
.++++.|.+.+|+.++ |+|+.++. ....++.++.++.|+++++-.- .+++.|..|.+.|+
T Consensus 73 ~em~~ia~~~kP~~vtLVPEkr~E~TTegGldv~~~~-----~~l~~~i~~l~~~gI~VSLFiD--Pd~~qi~~A~~~GA 145 (234)
T cd00003 73 EEMLEIALEVKPHQVTLVPEKREELTTEGGLDVAGQA-----EKLKPIIERLKDAGIRVSLFID--PDPEQIEAAKEVGA 145 (234)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCH-----HHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCc
Confidence 5788899988876544 56655433 4567788899999999988762 14577888888899
Q ss_pred Cccc
Q 024296 243 QRIG 246 (269)
Q Consensus 243 ~RIG 246 (269)
+||.
T Consensus 146 d~VE 149 (234)
T cd00003 146 DRVE 149 (234)
T ss_pred CEEE
Confidence 9885
No 125
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=74.19 E-value=31 Score=31.22 Aligned_cols=97 Identities=12% Similarity=0.121 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCC-CChhhHHHHHH-HHHHcCCceeeecCCCCChhHHHHHHhcCCCcccc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTK-GEWTTFLPALK-FAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH 247 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~-~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGH 247 (269)
.+.+.+...++.|.+.+.+.++.+ +..... .+...+.++.+ .|++.++|+.+|.--..+.+.+..|++.|.+=+--
T Consensus 26 ~n~e~~~avi~AAe~~~sPvIl~~--~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~ 103 (283)
T PRK07998 26 TNLETTISILNAIERSGLPNFIQI--APTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTSVMI 103 (283)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEC--cHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCEEEE
Confidence 357788899999988887766655 211112 23345555444 55667999999998777788999998876432211
Q ss_pred -cccCC--------HHHHHHHHhCCCceee
Q 024296 248 -ACCFE--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 248 -G~~~~--------~~l~~~l~~~~I~lEi 268 (269)
|-.+. -++.++....|+++|.
T Consensus 104 DgS~l~~eeNi~~T~~vve~Ah~~gv~VEa 133 (283)
T PRK07998 104 DGAALPFEENIAFTKEAVDFAKSYGVPVEA 133 (283)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 11111 1378888889999974
No 126
>PLN02321 2-isopropylmalate synthase
Probab=73.91 E-value=63 Score=32.71 Aligned_cols=109 Identities=8% Similarity=0.020 Sum_probs=75.1
Q ss_pred cCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc-eEEEEE-EEeCCCCHHHHHHHHHH
Q 024296 104 SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI-YVRLLL-SIDRRETTEAAMETVKL 181 (269)
Q Consensus 104 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~rli~-~~~R~~~~~~~~~~~~~ 181 (269)
.-+.+.++.++.+.+.++-+++ .|. .+.+-. ...| .+++.+.++++.
T Consensus 200 ~l~~t~ee~l~~~~~~V~~Ak~------------------------------~G~~~v~fs~EDa~r-td~d~l~~~~~~ 248 (632)
T PLN02321 200 KLRKTPDEVVEIARDMVKYARS------------------------------LGCEDVEFSPEDAGR-SDPEFLYRILGE 248 (632)
T ss_pred HhCCCHHHHHHHHHHHHHHHHH------------------------------cCCceEEEecccCCC-CCHHHHHHHHHH
Confidence 3468999999999999987754 121 222211 2233 358888888888
Q ss_pred HHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-----CCceeeecCCCCC--hhHHHHHHhcCCCccc
Q 024296 182 ALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPN--KEEIQSMLDFLPQRIG 246 (269)
Q Consensus 182 a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-----gl~~t~HAGE~~~--~e~i~~ai~l~a~RIG 246 (269)
+.+...+.|.=-|.+|. ..|.++..+++..++. ++.+.+|+--+.| ..|...|++.|+++|.
T Consensus 249 a~~aGa~~I~L~DTvG~---~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd 317 (632)
T PLN02321 249 VIKAGATTLNIPDTVGY---TLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVE 317 (632)
T ss_pred HHHcCCCEEEecccccC---CCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEE
Confidence 88765554554455553 3467888888888764 4669999977665 3577888999999984
No 127
>PLN02389 biotin synthase
Probab=73.75 E-value=17 Score=34.34 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCC---ChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCccc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKG---EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG 246 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~---~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIG 246 (269)
.+++++.+.++.+.+..-..|+ +..+|.-..+ ..+.+.++++.+++.|+.+....|. .+.+.+...-+.|.+|+.
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~-ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~-l~~E~l~~LkeAGld~~~ 193 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFC-MGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM-LEKEQAAQLKEAGLTAYN 193 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-EEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC-CCHHHHHHHHHcCCCEEE
Confidence 5687777777766554322222 1112211111 2466778888888889988888885 345655555568999999
Q ss_pred ccccCCH----------------HHHHHHHhCCCce
Q 024296 247 HACCFEE----------------EEWRKLKSSKIPV 266 (269)
Q Consensus 247 HG~~~~~----------------~l~~~l~~~~I~l 266 (269)
|.+...| +.++.+++.||.+
T Consensus 194 ~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 194 HNLDTSREYYPNVITTRSYDDRLETLEAVREAGISV 229 (379)
T ss_pred eeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeE
Confidence 9876322 2567777777654
No 128
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=73.71 E-value=78 Score=29.47 Aligned_cols=91 Identities=18% Similarity=0.143 Sum_probs=52.4
Q ss_pred EEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCCh------hH
Q 024296 160 VRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNK------EE 233 (269)
Q Consensus 160 ~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~------e~ 233 (269)
++++ ++..... .+.+.++.+.++ +.+++++-.. ..| ..++.|.+.|+...-|..=..++ --
T Consensus 162 ik~~-tlaPE~~--~~~~~i~~~~~~--gi~v~~GH~~-------a~~-~~~~~a~~~G~~~~tH~~n~m~~~~~r~~~~ 228 (374)
T cd00854 162 IKLV-TLAPELD--GALELIRYLVER--GIIVSIGHSD-------ATY-EQAVAAFEAGATHVTHLFNAMSPLHHREPGV 228 (374)
T ss_pred EEEE-EECCCCC--ChHHHHHHHHHC--CeEEEeeCCc-------CCH-HHHHHHHHcCCCeeeECCCCCCCcCCCCCcH
Confidence 4444 5544432 125667766543 3355554332 112 23555667899999998633222 12
Q ss_pred HHHHHhc---CCCcccccccCCHHHHHHHHhCC
Q 024296 234 IQSMLDF---LPQRIGHACCFEEEEWRKLKSSK 263 (269)
Q Consensus 234 i~~ai~l---~a~RIGHG~~~~~~l~~~l~~~~ 263 (269)
+..+++. -+.=|.||++++|+.++++.+.+
T Consensus 229 ~~a~l~~~~~~~~li~dg~Hv~~~~~~~~~r~~ 261 (374)
T cd00854 229 VGAALSDDDVYAELIADGIHVHPAAVRLAYRAK 261 (374)
T ss_pred HHHhhcCCCCeEEEEcCCCcCCHHHHHHHHHhc
Confidence 4455542 36688999999998777777663
No 129
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=73.43 E-value=1.2e+02 Score=33.00 Aligned_cols=147 Identities=14% Similarity=0.056 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCC
Q 024296 75 TRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTR 154 (269)
Q Consensus 75 ~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (269)
..+++.+++.+++.||-..-+. ++-.+ ++.+..+++.+++ .
T Consensus 624 d~vv~~f~~~~~~~Gidifrif-D~lN~----------~~n~~~~~~~~~~----------------------------~ 664 (1143)
T TIGR01235 624 DNVVKYFVKQAAQGGIDIFRVF-DSLNW----------VENMRVGMDAVAE----------------------------A 664 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC-ccCcC----------HHHHHHHHHHHHH----------------------------c
Confidence 5667889999999999988773 32221 4555555555432 1
Q ss_pred CCCceEEEEEEE-----eCC-CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCC
Q 024296 155 GKKIYVRLLLSI-----DRR-ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGE 227 (269)
Q Consensus 155 ~~~i~~rli~~~-----~R~-~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE 227 (269)
..-++..+.++. .|. .+.+...+.++.+.+..-+.+.==|++|-= .|.....+++.+|+. ++++-+|.--
T Consensus 665 g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll---~P~~~~~Lv~~lk~~~~~pi~~H~Hd 741 (1143)
T TIGR01235 665 GKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLL---KPAAAKLLIKALREKTDLPIHFHTHD 741 (1143)
T ss_pred CCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCc---CHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 123344555553 232 344544455554444433434444666643 345566666666654 8999999988
Q ss_pred CCC--hhHHHHHHhcCCCcccccccC------CH---HHHHHHHhCC
Q 024296 228 IPN--KEEIQSMLDFLPQRIGHACCF------EE---EEWRKLKSSK 263 (269)
Q Consensus 228 ~~~--~e~i~~ai~l~a~RIGHG~~~------~~---~l~~~l~~~~ 263 (269)
+.| ..+...|++.|+++|.=.+.- .| .++..|...+
T Consensus 742 t~Gla~an~laA~eaGad~vD~ai~gl~G~ts~p~~e~~v~~L~~~~ 788 (1143)
T TIGR01235 742 TSGIAVASMLAAVEAGVDVVDVAVDSMSGLTSQPSLGAIVAALEGSE 788 (1143)
T ss_pred CCCcHHHHHHHHHHhCCCEEEecchhhcCCCCCHhHHHHHHHHHhCC
Confidence 876 367889999999999866531 23 4566666544
No 130
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=73.25 E-value=28 Score=32.94 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCC---CCChhhHHHHHHHHHHcCCceeeecCCCCCh--hHHHHHHh----cC
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPT---KGEWTTFLPALKFAREQGLQITLHCGEIPNK--EEIQSMLD----FL 241 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~---~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~--e~i~~ai~----l~ 241 (269)
++++..++.++..+....|++||-....-. ..+...+..+|+.|++.|..+.+|+-+.... +.+..++. .|
T Consensus 162 ~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~e~~av~~~~~~a~~~g 241 (415)
T cd01297 162 TEEELAKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEGDSILEALDELLRLGRETG 241 (415)
T ss_pred CHHHHHHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECcccccHHHHHHHHHHHHHHhC
Confidence 444454544444333344788887554211 2355778899999999999999999654322 33444443 23
Q ss_pred -CCcccccccCCH----------HHHHHHHhCCC--ceeeC
Q 024296 242 -PQRIGHACCFEE----------EEWRKLKSSKI--PVRIS 269 (269)
Q Consensus 242 -a~RIGHG~~~~~----------~l~~~l~~~~I--~lEic 269 (269)
.-.|.|-..... ++++..+++++ ..|+|
T Consensus 242 ~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~ 282 (415)
T cd01297 242 RPVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVY 282 (415)
T ss_pred CCEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeC
Confidence 467777754422 45556666554 44444
No 131
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.21 E-value=79 Score=30.30 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHcCCceeeecCCCCC--------------hhHHHHHHh-cC-CCcccccccCCHHHHHHHHhCCCceeeC
Q 024296 206 TFLPALKFAREQGLQITLHCGEIPN--------------KEEIQSMLD-FL-PQRIGHACCFEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 206 ~f~~~f~~ar~~gl~~t~HAGE~~~--------------~e~i~~ai~-l~-a~RIGHG~~~~~~l~~~l~~~~I~lEic 269 (269)
.|-...+.|+...+++..|--|... +-.+++--- |+ ..=+.|++.++++-+..|++++--+-.|
T Consensus 221 v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~~~y~~~yd~~~lL~~ktvlaH~~hl~d~ei~~l~k~g~svshC 300 (439)
T KOG3968|consen 221 VFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPEKLSYTDVYDKGGLLTEKTVLAHLEHLSDEEIELLAKRGCSVSHC 300 (439)
T ss_pred hHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhhhhcccchHHHHHhcccchHhHhhhheecCchhHHHHHhcCCceEEC
Confidence 3555557777788999999877541 112333322 45 4557899999888788888887655444
No 132
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=72.69 E-value=12 Score=32.57 Aligned_cols=63 Identities=24% Similarity=0.467 Sum_probs=47.7
Q ss_pred HHHHHHHhhCCCceE-------------EEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCC
Q 024296 177 ETVKLALEMRDLGVV-------------GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQ 243 (269)
Q Consensus 177 ~~~~~a~~~~~~~vv-------------Gidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~ 243 (269)
+++.+|.+.+|..|+ |+|++|.- ....++.++.+..|+++++-.- .+++.+..|.+.|++
T Consensus 75 Eml~ia~~~kP~~vtLVPe~r~evTTegGlD~~~~~-----~~l~~~v~~L~~~GirVSLFiD--~d~~qi~aa~~~gA~ 147 (243)
T COG0854 75 EMLAIALKTKPHQVTLVPEKREEVTTEGGLDVAGQL-----DKLRDAVRRLKNAGIRVSLFID--PDPEQIEAAAEVGAP 147 (243)
T ss_pred HHHHHHHhcCCCeEEeCCCchhhcccccchhhhhhh-----hhHHHHHHHHHhCCCeEEEEeC--CCHHHHHHHHHhCCC
Confidence 348888888776444 66666543 3466788888999999999884 357889999999999
Q ss_pred ccc
Q 024296 244 RIG 246 (269)
Q Consensus 244 RIG 246 (269)
||.
T Consensus 148 ~IE 150 (243)
T COG0854 148 RIE 150 (243)
T ss_pred EEE
Confidence 996
No 133
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=71.91 E-value=77 Score=28.65 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=80.6
Q ss_pred cCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCceEEEEEEE---eCCCCHHHHHHHHH
Q 024296 104 SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSI---DRRETTEAAMETVK 180 (269)
Q Consensus 104 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~~---~R~~~~~~~~~~~~ 180 (269)
..+.+.++.++.+.+.++.+++. +....++.++.-++. .| .+++.+.++++
T Consensus 110 ~~~~s~~e~~~~~~~~v~~a~~~-------------------------g~~~~~~~~~~~~~~EDasr-~~~~~l~~~~~ 163 (284)
T cd07942 110 VFGKSKEEIIEIAVDGAKLVKEL-------------------------AAKYPETDWRFEYSPESFSD-TELDFALEVCE 163 (284)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHh-------------------------cccccCceEEEEECCccCCC-CCHHHHHHHHH
Confidence 44689999999999999877541 101001112222222 24 45788888888
Q ss_pred HHHhhCCCc---eEEEecCCCCCCCChhhHHHHHHHHHHc-----CCceeeecCCCCC--hhHHHHHHhcCCCccccccc
Q 024296 181 LALEMRDLG---VVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPN--KEEIQSMLDFLPQRIGHACC 250 (269)
Q Consensus 181 ~a~~~~~~~---vvGidl~G~E~~~~~~~f~~~f~~ar~~-----gl~~t~HAGE~~~--~e~i~~ai~l~a~RIGHG~~ 250 (269)
.+.+..+.+ +.-|.|+-.=....|......++..++. ++++.+|.--+.| ..|...|++.|+++|.=.+.
T Consensus 164 ~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~id~~~~ 243 (284)
T cd07942 164 AVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGADRVEGTLF 243 (284)
T ss_pred HHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCCCEEEeeCc
Confidence 776653222 2233333111123567777777777664 5779999987765 36888899999999873222
Q ss_pred C---------CHHHHHHHHhCCCc
Q 024296 251 F---------EEEEWRKLKSSKIP 265 (269)
Q Consensus 251 ~---------~~~l~~~l~~~~I~ 265 (269)
- .++++-.|...++.
T Consensus 244 g~GeRaGN~~~E~lv~~l~~~g~~ 267 (284)
T cd07942 244 GNGERTGNVDLVTLALNLYSQGVD 267 (284)
T ss_pred cCCccccchhHHHHHHHHHhcCCC
Confidence 1 13566666555553
No 134
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=71.21 E-value=87 Score=28.96 Aligned_cols=165 Identities=18% Similarity=0.178 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHHH---HHhcCCeEEEEec----------CCCCcc---cCCCCHHHHHHHHHHHHHhhhhcccccccc
Q 024296 70 DHATVTRITQEVVED---FASENIVYLELRT----------TPKRNE---SIGMSKRSYMDAVVEGLRAVSAVDVDFASR 133 (269)
Q Consensus 70 ~~~~~~~~~~~~~~~---~~~dnV~Y~Elr~----------~p~~~~---~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~ 133 (269)
|.+++..+..++.+. +.+-|.-.+||-. +|..+. .-|=+.+.-.+-+.+.++..++.
T Consensus 132 t~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~------- 204 (343)
T cd04734 132 EEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAA------- 204 (343)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHH-------
Confidence 455677776666653 4457889999987 665432 22335554444444444433320
Q ss_pred ccccccccccccccccccCCCCCCceEEEEEE--EeCCCCHHHHHHHHHHHHhhCCCc-eEEEecCCC--CCC-------
Q 024296 134 SIDVRRPVNTKNMNDACNGTRGKKIYVRLLLS--IDRRETTEAAMETVKLALEMRDLG-VVGIDLSGN--PTK------- 201 (269)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~--~~R~~~~~~~~~~~~~a~~~~~~~-vvGidl~G~--E~~------- 201 (269)
...++.+.+|+-.. .....+.++..+.++...+ .+ +--+++++. +..
T Consensus 205 ------------------vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~---~G~vd~i~vs~g~~~~~~~~~~~~ 263 (343)
T cd04734 205 ------------------VGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAA---EGLIDYVNVSAGSYYTLLGLAHVV 263 (343)
T ss_pred ------------------cCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHh---cCCCCEEEeCCCCCCccccccccc
Confidence 12344566775432 1222445555444444433 23 455666431 111
Q ss_pred ----CChhhHHHHHHHHHHc-CCceeeecCCCCChhHHHHHHhc-CCCcccccc--cCCHHHHHHHHhCC
Q 024296 202 ----GEWTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDF-LPQRIGHAC--CFEEEEWRKLKSSK 263 (269)
Q Consensus 202 ----~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l-~a~RIGHG~--~~~~~l~~~l~~~~ 263 (269)
.+...+.+..+..++. ++|+.+ .|...+++...++++. ++|=|+=|- -.+|++.+.+++.+
T Consensus 264 ~~~~~~~~~~~~~~~~ik~~~~ipvi~-~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~g~ 332 (343)
T cd04734 264 PSMGMPPGPFLPLAARIKQAVDLPVFH-AGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAREGR 332 (343)
T ss_pred CCCCCCcchhHHHHHHHHHHcCCCEEe-eCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHHcCC
Confidence 0111234555555554 788666 4777788888889885 477776664 34899998888865
No 135
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=71.15 E-value=60 Score=27.10 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccccC---CHHHHHHHHh
Q 024296 208 LPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF---EEEEWRKLKS 261 (269)
Q Consensus 208 ~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~---~~~l~~~l~~ 261 (269)
.++.+.+++.|.++.+ +..+++++..|++.|++-|+= +.. .++.++.+++
T Consensus 87 ~~~~~~~~~~~~~~i~---gv~t~~e~~~A~~~Gad~i~~-~p~~~~g~~~~~~l~~ 139 (190)
T cd00452 87 PEVVKAANRAGIPLLP---GVATPTEIMQALELGADIVKL-FPAEAVGPAYIKALKG 139 (190)
T ss_pred HHHHHHHHHcCCcEEC---CcCCHHHHHHHHHCCCCEEEE-cCCcccCHHHHHHHHh
Confidence 4577778888888765 445788899999999999873 112 3566666664
No 136
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=69.94 E-value=49 Score=31.01 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCC--CChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcc
Q 024296 168 RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTK--GEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI 245 (269)
Q Consensus 168 R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~--~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RI 245 (269)
+..++++..+.+..+.+ .++.-|-|+|.|.. .+...+..+++.+++..-.+++++|-. +.+.+...-+.|++|+
T Consensus 102 ~~ls~eEI~~~a~~~~~---~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i~~g~l-t~e~l~~Lk~aGv~r~ 177 (371)
T PRK09240 102 KTLDEEEIEREMAAIKK---LGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSIEVQPL-SEEEYAELVELGLDGV 177 (371)
T ss_pred ccCCHHHHHHHHHHHHh---CCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCceeccCCC-CHHHHHHHHHcCCCEE
Confidence 34567766666665543 35666666654433 356778888888887533456777753 4555655556899999
Q ss_pred cccccC-CHHHHHHH
Q 024296 246 GHACCF-EEEEWRKL 259 (269)
Q Consensus 246 GHG~~~-~~~l~~~l 259 (269)
-|++.. +++..+.+
T Consensus 178 ~i~lET~~~~~~~~i 192 (371)
T PRK09240 178 TVYQETYNPATYAKH 192 (371)
T ss_pred EEEEecCCHHHHHHh
Confidence 999875 56555444
No 137
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=69.34 E-value=9.1 Score=33.75 Aligned_cols=64 Identities=27% Similarity=0.536 Sum_probs=43.6
Q ss_pred HHHHHHHHhhCCCceE-------------EEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCC
Q 024296 176 METVKLALEMRDLGVV-------------GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP 242 (269)
Q Consensus 176 ~~~~~~a~~~~~~~vv-------------Gidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a 242 (269)
.+.++.|.+.+|+.++ |+|+.++ .....++.++.++.|+++++-.- .+++.|..|.++|+
T Consensus 74 ~e~~~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~-----~~~l~~~i~~L~~~gIrvSLFiD--P~~~qi~~A~~~Ga 146 (239)
T PF03740_consen 74 EEMVDIALKVKPDQVTLVPEKREELTTEGGLDVAGN-----RDRLKPVIKRLKDAGIRVSLFID--PDPEQIEAAKELGA 146 (239)
T ss_dssp HHHHHHHHHH--SEEEEE--SGGGBSTTSSB-TCGG-----HHHHHHHHHHHHHTT-EEEEEE---S-HHHHHHHHHTT-
T ss_pred HHHHHHHHhCCcCEEEECCCCCCCcCCCcCChhhcC-----HHHHHHHHHHHHhCCCEEEEEeC--CCHHHHHHHHHcCC
Confidence 4678888888887544 5555543 25577889999999999988762 14678888989999
Q ss_pred Cccc
Q 024296 243 QRIG 246 (269)
Q Consensus 243 ~RIG 246 (269)
+||.
T Consensus 147 d~VE 150 (239)
T PF03740_consen 147 DRVE 150 (239)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9985
No 138
>PRK12999 pyruvate carboxylase; Reviewed
Probab=68.86 E-value=1.8e+02 Score=31.71 Aligned_cols=146 Identities=12% Similarity=0.081 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCC
Q 024296 77 ITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (269)
Q Consensus 77 ~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (269)
+..+.++.+++.|+..+-+.. + ++. ++.+..+++.+++ ...
T Consensus 628 v~~~~i~~a~~~Gid~~rifd-~-------lnd---~~~~~~~i~~vk~----------------------------~g~ 668 (1146)
T PRK12999 628 VVRAFVREAAAAGIDVFRIFD-S-------LNW---VENMRVAIDAVRE----------------------------TGK 668 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEEec-c-------CCh---HHHHHHHHHHHHH----------------------------cCC
Confidence 456678888999999866642 2 121 3445555555432 111
Q ss_pred CceEEEEEEE-----eCC-CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCC
Q 024296 157 KIYVRLLLSI-----DRR-ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIP 229 (269)
Q Consensus 157 ~i~~rli~~~-----~R~-~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~ 229 (269)
...+.+-++. .|. .+++...+.++.+.+..-+.+.=-|.+|-=. |.....+++.+|+. ++++-+|.--+.
T Consensus 669 ~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~---P~~~~~lv~~lk~~~~ipi~~H~Hnt~ 745 (1146)
T PRK12999 669 IAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLK---PAAAYELVSALKEEVDLPIHLHTHDTS 745 (1146)
T ss_pred eEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCC---HHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 2234443431 243 4566656666666555444455557777543 55566666666654 899999999888
Q ss_pred Ch--hHHHHHHhcCCCcccccccC------C---HHHHHHHHhCCC
Q 024296 230 NK--EEIQSMLDFLPQRIGHACCF------E---EEEWRKLKSSKI 264 (269)
Q Consensus 230 ~~--e~i~~ai~l~a~RIGHG~~~------~---~~l~~~l~~~~I 264 (269)
|- .|...|++.|++.|.=.+.- + ++++..|...+.
T Consensus 746 Gla~an~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~~~~~ 791 (1146)
T PRK12999 746 GNGLATYLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALEGTER 791 (1146)
T ss_pred chHHHHHHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHHhcCC
Confidence 64 67888999999998765531 2 345666665443
No 139
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=68.80 E-value=86 Score=27.94 Aligned_cols=79 Identities=23% Similarity=0.184 Sum_probs=56.1
Q ss_pred CCceEEEecCCCCCCCC----h----hhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHh-cC--CCcccccccCCHHH
Q 024296 187 DLGVVGIDLSGNPTKGE----W----TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FL--PQRIGHACCFEEEE 255 (269)
Q Consensus 187 ~~~vvGidl~G~E~~~~----~----~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~-l~--a~RIGHG~~~~~~l 255 (269)
+..|++|+=.|-..... . +-|...++.|++.++|+.+|+-+. .+.+.+.+. .+ ..=|=|.+.-+.+.
T Consensus 86 ~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A--~~d~~~iL~~~~~~~~gi~HcFsGs~e~ 163 (256)
T COG0084 86 HPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDA--HEDTLEILKEEGAPVGGVLHCFSGSAEE 163 (256)
T ss_pred CCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEcccc--HHHHHHHHHhcCCCCCEEEEccCCCHHH
Confidence 35688888777554321 1 337888899999999999999773 466777776 55 23367877777888
Q ss_pred HHHHHhCCCcee
Q 024296 256 WRKLKSSKIPVR 267 (269)
Q Consensus 256 ~~~l~~~~I~lE 267 (269)
.+.+.+.|.-+-
T Consensus 164 a~~~~d~G~yis 175 (256)
T COG0084 164 ARKLLDLGFYIS 175 (256)
T ss_pred HHHHHHcCeEEE
Confidence 888888775543
No 140
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=68.70 E-value=54 Score=29.68 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHH-HHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccc
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 249 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~ 249 (269)
+.+.+...++.|.+.+.+.+..+.-..... .+...+.++.. .|++.++|+.+|.--..+.+.+..|++.|-+ ..-+
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~~~~-~g~~~~~~~~~~~a~~~~VPValHLDH~~~~e~i~~ai~~Gft--SVMi 103 (284)
T PRK12737 27 NLETLQVVVETAAELRSPVILAGTPGTFSY-AGTDYIVAIAEVAARKYNIPLALHLDHHEDLDDIKKKVRAGIR--SVMI 103 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCccHHhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCC--eEEe
Confidence 578899999999998887777653322211 12344666444 5667799999999887778999999987643 2222
Q ss_pred c---CC--------HHHHHHHHhCCCceee
Q 024296 250 C---FE--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 250 ~---~~--------~~l~~~l~~~~I~lEi 268 (269)
. ++ -+++++....|+.+|-
T Consensus 104 DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEa 133 (284)
T PRK12737 104 DGSHLSFEENIAIVKEVVEFCHRYDASVEA 133 (284)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 1 21 1478888889999883
No 141
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=68.65 E-value=22 Score=33.16 Aligned_cols=99 Identities=12% Similarity=0.130 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCC--hhh------------HHHHHH-HHHHcCCceeeecCCCCC--hh
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGE--WTT------------FLPALK-FAREQGLQITLHCGEIPN--KE 232 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~--~~~------------f~~~f~-~ar~~gl~~t~HAGE~~~--~e 232 (269)
.+.+.+..+++.|.+.+.+.+..+--........ ... +.++.+ .|++.++|+.+|.--..+ .+
T Consensus 29 ~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~~~ 108 (350)
T PRK09197 29 VGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVILHTDHCAKKLLP 108 (350)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcchH
Confidence 3588899999999998888777663321111010 122 444444 456679999999977666 67
Q ss_pred HHHHHHhcCCCccccc----ccC---C----H---------HHHHHHHhCCCceee
Q 024296 233 EIQSMLDFLPQRIGHA----CCF---E----E---------EEWRKLKSSKIPVRI 268 (269)
Q Consensus 233 ~i~~ai~l~a~RIGHG----~~~---~----~---------~l~~~l~~~~I~lEi 268 (269)
.+..|++.|.+-+-.| +.. | | +++++....+|.+|-
T Consensus 109 ~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVEa 164 (350)
T PRK09197 109 WIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLEI 164 (350)
T ss_pred HHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 7888888874444444 321 1 1 367888889999984
No 142
>PRK09061 D-glutamate deacylase; Validated
Probab=68.28 E-value=47 Score=32.50 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecC--CCCCCCChhhHHHHHHHHHHcCCceeeecCCCCC------hhHHHHHHh---
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLS--GNPTKGEWTTFLPALKFAREQGLQITLHCGEIPN------KEEIQSMLD--- 239 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~--G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~------~e~i~~ai~--- 239 (269)
+.++..++..+..+-...|..||... ..+ ..+...+..+++.|++.|.+++.|+-+..- .+.+.++++
T Consensus 164 t~~el~~m~~ll~~al~~Ga~gis~~~~y~p-~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~ 242 (509)
T PRK09061 164 TPAELAEILELLEQGLDEGALGIGIGAGYAP-GTGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAA 242 (509)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEecCCccCC-CCCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHHHHHHHHHHHH
Confidence 45555555554443333467888742 322 235577999999999999999999987531 133444444
Q ss_pred -cCC-CcccccccCC----H---HHHHHHHhCCCce--eeC
Q 024296 240 -FLP-QRIGHACCFE----E---EEWRKLKSSKIPV--RIS 269 (269)
Q Consensus 240 -l~a-~RIGHG~~~~----~---~l~~~l~~~~I~l--Eic 269 (269)
.|. =-|.|-.... + ++++..+++++.+ |+|
T Consensus 243 ~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 243 ETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred HhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEec
Confidence 232 2344443321 3 3577777888666 554
No 143
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.54 E-value=80 Score=27.09 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=66.6
Q ss_pred EEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCC
Q 024296 163 LLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP 242 (269)
Q Consensus 163 i~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a 242 (269)
++-+.|..+++++.+.++.+.+- ++-.+.+.=+ .+.-.+.++.+++..=.+.+=||=..+++.++++++.|+
T Consensus 6 vv~Vir~~~~~~a~~ia~al~~g---Gi~~iEit~~-----tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA 77 (201)
T PRK06015 6 VIPVLLIDDVEHAVPLARALAAG---GLPAIEITLR-----TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS 77 (201)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHC---CCCEEEEeCC-----CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC
Confidence 56678999999998888877653 4444444321 122445566665543357788888889999999999998
Q ss_pred CcccccccCCHHHHHHHHhCCCce
Q 024296 243 QRIGHACCFEEEEWRKLKSSKIPV 266 (269)
Q Consensus 243 ~RIGHG~~~~~~l~~~l~~~~I~l 266 (269)
+=|=-= .++|+++++.++++|+.
T Consensus 78 ~FivSP-~~~~~vi~~a~~~~i~~ 100 (201)
T PRK06015 78 RFIVSP-GTTQELLAAANDSDVPL 100 (201)
T ss_pred CEEECC-CCCHHHHHHHHHcCCCE
Confidence 765322 35789999999999874
No 144
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=67.36 E-value=42 Score=31.27 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=39.0
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCCh-hHHHHHHhcCCCccccccc-------C-C---HHHHHHHHhCCCce
Q 024296 203 EWTTFLPALKFAREQGLQITLHCGEIPNK-EEIQSMLDFLPQRIGHACC-------F-E---EEEWRKLKSSKIPV 266 (269)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~~~-e~i~~ai~l~a~RIGHG~~-------~-~---~~l~~~l~~~~I~l 266 (269)
+.+.+....+.|++.|+++.+|++|.... ..+...+.-+ .-+.|.+. . + .+.++.++++|+.+
T Consensus 171 ~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~~~l~~g-~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 245 (379)
T PRK12394 171 GLKPLTETLRIANDLRCPVAVHSTHPVLPMKELVSLLRRG-DIIAHAFHGKGSTILTEEGAVLAEVRQARERGVIF 245 (379)
T ss_pred chHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHhcCCC-CEEEecCCCCCCCcCCCCCCChHHHHHHHhCCeEE
Confidence 35678889999999999999999996422 2222222223 23555543 1 1 23566677777654
No 145
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=67.08 E-value=47 Score=26.36 Aligned_cols=20 Identities=10% Similarity=-0.142 Sum_probs=15.2
Q ss_pred HHHHHHhcCCeEEEEecCCC
Q 024296 81 VVEDFASENIVYLELRTTPK 100 (269)
Q Consensus 81 ~~~~~~~dnV~Y~Elr~~p~ 100 (269)
.+.+....||+|+|+|....
T Consensus 33 ~i~~qL~~GvR~~dirv~~~ 52 (135)
T smart00148 33 GYIQALDHGCRCVELDCWDG 52 (135)
T ss_pred HHHHHHHhCCCEEEEEcccC
Confidence 44556679999999997643
No 146
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=66.80 E-value=86 Score=27.18 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=66.2
Q ss_pred EEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCChhHHHHHHhcC
Q 024296 163 LLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFL 241 (269)
Q Consensus 163 i~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~-~gl~~t~HAGE~~~~e~i~~ai~l~ 241 (269)
++-+.|..+++++...++..++ .|+-.|.+.=+ . ..-.++++.+++ .+ ...+=||=..+++.+++++..|
T Consensus 15 vI~Vlr~~~~e~a~~~a~Ali~---gGi~~IEITl~----s-p~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aG 85 (211)
T COG0800 15 VVPVIRGDDVEEALPLAKALIE---GGIPAIEITLR----T-PAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAG 85 (211)
T ss_pred eeEEEEeCCHHHHHHHHHHHHH---cCCCeEEEecC----C-CCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcC
Confidence 5667788889988877776664 35666655321 1 222334444443 45 8889999999999999999999
Q ss_pred CCcccccccCCHHHHHHHHhCCCce
Q 024296 242 PQRIGHACCFEEEEWRKLKSSKIPV 266 (269)
Q Consensus 242 a~RIGHG~~~~~~l~~~l~~~~I~l 266 (269)
++=|= .=.+++++++...+++||+
T Consensus 86 a~fiV-sP~~~~ev~~~a~~~~ip~ 109 (211)
T COG0800 86 AQFIV-SPGLNPEVAKAANRYGIPY 109 (211)
T ss_pred CCEEE-CCCCCHHHHHHHHhCCCcc
Confidence 76542 2246889999999999875
No 147
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=66.79 E-value=54 Score=30.24 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=36.1
Q ss_pred CCceEEEec----CC-CCCCCChhhHHHHHHHHHHcCCceeeecCCCCC-hhHHHHHHhcCCCccccccc
Q 024296 187 DLGVVGIDL----SG-NPTKGEWTTFLPALKFAREQGLQITLHCGEIPN-KEEIQSMLDFLPQRIGHACC 250 (269)
Q Consensus 187 ~~~vvGidl----~G-~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~-~e~i~~ai~l~a~RIGHG~~ 250 (269)
+..++||.. ++ .|.+-.+..+...+..+ +.|+++.+|+++... .+.+..++..| +.+-|.++
T Consensus 143 ~~~vv~~~~~~t~~~i~E~gl~~~~~~~~l~~~-~~~~pv~vH~~~a~~~~~~i~~~~~~g-~~~~H~fn 210 (365)
T TIGR03583 143 PDFIVGLKARMSKSVVGDNGIEPLEIAKQIQQE-NLELPLMVHIGSAPPELDEILALMEKG-DVLTHCFN 210 (365)
T ss_pred cCcEEEEEEeecccccccCCcCHHHHHHHHHHh-cCCCcEEEEeCCCccCHHHHHHHhcCC-Ceeeeeec
Confidence 345777442 22 34322345566655544 678999999999753 34555554445 56777654
No 148
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=66.70 E-value=91 Score=27.42 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCeEEEEecCC
Q 024296 79 QEVVEDFASENIVYLELRTTP 99 (269)
Q Consensus 79 ~~~~~~~~~dnV~Y~Elr~~p 99 (269)
.+.++.+++.|..++|+....
T Consensus 24 ~e~~~~~~~~G~~~iEl~~~~ 44 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMSVDE 44 (283)
T ss_pred HHHHHHHHHcCCCeEEEecCc
Confidence 567777889999999997653
No 149
>PLN02826 dihydroorotate dehydrogenase
Probab=66.38 E-value=1.2e+02 Score=28.88 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=77.1
Q ss_pred cCCeEEEEecC-CCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCceEEEEEEE
Q 024296 88 ENIVYLELRTT-PKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSI 166 (269)
Q Consensus 88 dnV~Y~Elr~~-p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~~ 166 (269)
+.+-|+|+=++ |.....+.+...+.+..+++.+.+.++.-. . +.....++-++ +
T Consensus 215 ~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~--------------------~-~~~~~~Pv~vK----l 269 (409)
T PLN02826 215 QYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQ--------------------W-GEEGPPPLLVK----I 269 (409)
T ss_pred hhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhh--------------------h-ccccCCceEEe----c
Confidence 45779999987 653222223334556666666654422000 0 00011233333 3
Q ss_pred eCCCCHHHHHHHHHHHHhhCCCceEEEecC--------C----CCCCC---Chh--hHHHHHHHHHH-c--CCceeeecC
Q 024296 167 DRRETTEAAMETVKLALEMRDLGVVGIDLS--------G----NPTKG---EWT--TFLPALKFARE-Q--GLQITLHCG 226 (269)
Q Consensus 167 ~R~~~~~~~~~~~~~a~~~~~~~vvGidl~--------G----~E~~~---~~~--~f~~~f~~ar~-~--gl~~t~HAG 226 (269)
.=..+.+...++++.+.+..-++|+.++.. . .|.++ ++- .=..+...+++ . .+++..= |
T Consensus 270 aPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgv-G 348 (409)
T PLN02826 270 APDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGC-G 348 (409)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEE-C
Confidence 223445566777777777766778887731 1 12221 110 11122222322 2 4666444 4
Q ss_pred CCCChhHHHHHHhcCCCcccccccC---CH--------HHHHHHHhCCC
Q 024296 227 EIPNKEEIQSMLDFLPQRIGHACCF---EE--------EEWRKLKSSKI 264 (269)
Q Consensus 227 E~~~~e~i~~ai~l~a~RIGHG~~~---~~--------~l~~~l~~~~I 264 (269)
=..+.+.+++.|..||+=+.=|..+ .| ++.++|.++++
T Consensus 349 GI~sg~Da~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~eL~~~l~~~G~ 397 (409)
T PLN02826 349 GVSSGEDAYKKIRAGASLVQLYTAFAYEGPALIPRIKAELAACLERDGF 397 (409)
T ss_pred CCCCHHHHHHHHHhCCCeeeecHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 4456788999999998877655432 23 35556666553
No 150
>PRK08445 hypothetical protein; Provisional
Probab=65.92 E-value=67 Score=29.83 Aligned_cols=87 Identities=14% Similarity=0.048 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeec---CCCC---------ChhHHHHHH
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC---GEIP---------NKEEIQSML 238 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HA---GE~~---------~~e~i~~ai 238 (269)
++++..+.++.+.......|+-.| |.....+.+.+.++++..++..-.+..|+ +|.. ..+.+...-
T Consensus 74 ~~eeI~~~~~~a~~~g~~~i~~~g--g~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~Lk 151 (348)
T PRK08445 74 SFEEIDKKIEELLAIGGTQILFQG--GVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQ 151 (348)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec--CCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHH
Confidence 577777777777665433343322 34444566788999999998865555553 3322 134333444
Q ss_pred hcCCCcccc-cccC-CHHHHHHH
Q 024296 239 DFLPQRIGH-ACCF-EEEEWRKL 259 (269)
Q Consensus 239 ~l~a~RIGH-G~~~-~~~l~~~l 259 (269)
+.|.+|+-| |.-+ ++++.+.+
T Consensus 152 eAGl~~~~g~glE~~~d~v~~~~ 174 (348)
T PRK08445 152 AKGLSSIPGAGAEILSDRVRDII 174 (348)
T ss_pred HcCCCCCCCCceeeCCHHHHHhh
Confidence 579999976 5653 44444433
No 151
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=65.54 E-value=1e+02 Score=27.69 Aligned_cols=152 Identities=11% Similarity=-0.019 Sum_probs=89.1
Q ss_pred HHHHhcCCeEEEEecCCCC-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCce
Q 024296 83 EDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIY 159 (269)
Q Consensus 83 ~~~~~dnV~Y~Elr~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (269)
+.+.+-|+..+-+-++-.. + ...+.+.++.++.+.+.++.+++ .|+.
T Consensus 81 e~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~------------------------------~g~~ 130 (279)
T cd07947 81 KLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALD------------------------------HGIK 130 (279)
T ss_pred HHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHH------------------------------CCCe
Confidence 3444458877777554222 1 24578999999999999887643 3555
Q ss_pred EEEEE-EEeCCCCH----HHHHHHHHHHHhhCCC-ceEEEecCCCCCCC----ChhhHHHHHHHHHHc-CC---ceeeec
Q 024296 160 VRLLL-SIDRRETT----EAAMETVKLALEMRDL-GVVGIDLSGNPTKG----EWTTFLPALKFAREQ-GL---QITLHC 225 (269)
Q Consensus 160 ~rli~-~~~R~~~~----~~~~~~~~~a~~~~~~-~vvGidl~G~E~~~----~~~~f~~~f~~ar~~-gl---~~t~HA 225 (269)
+++-+ ...|.... +.+.+.++.+.+..-+ .|.==|.+|-=... -|.+...+++.+++. ++ ++-+|.
T Consensus 131 v~~~~ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~ 210 (279)
T cd07947 131 PRCHLEDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHG 210 (279)
T ss_pred EEEEEEcccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 55443 23343211 2455555555433323 23333666632221 235566777777664 44 589998
Q ss_pred CCCCC--hhHHHHHHhcCCCccccccc-----C----CHHHHHHHHhC-CC
Q 024296 226 GEIPN--KEEIQSMLDFLPQRIGHACC-----F----EEEEWRKLKSS-KI 264 (269)
Q Consensus 226 GE~~~--~e~i~~ai~l~a~RIGHG~~-----~----~~~l~~~l~~~-~I 264 (269)
-=+.| ..|...|++.|++++.=.+. . .++++..+... ++
T Consensus 211 Hn~~Gla~AN~laA~~aG~~~vd~sv~GlGe~aGN~~tE~lv~~l~~~~g~ 261 (279)
T cd07947 211 HNDFYKAVANAVAAWLYGASWVNCTLLGIGERTGNCPLEAMVIEYAQLKGN 261 (279)
T ss_pred cCCCChHHHHHHHHHHhCCCEEEEecccccccccchhHHHHHHHHHHhcCC
Confidence 77765 36888999999999865543 1 24566566554 44
No 152
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=65.33 E-value=42 Score=30.41 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCCh-hhHHHHHHHHHH-cCCceeeecCCCCChhHHHHHHhcCCCcccc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEW-TTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQRIGH 247 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~-~~f~~~f~~ar~-~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGH 247 (269)
.+|+++.+.++.. .-+..=++|+-+-.-.++.| -+| +.++..++ -++|+++|.|=..+.+.++.++.+|..-|-=
T Consensus 156 T~peeA~~Fv~~T--gvD~LAvaiGt~HG~Y~~~p~L~~-~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi 232 (285)
T PRK07709 156 ADPAECKHLVEAT--GIDCLAPALGSVHGPYKGEPNLGF-AEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINV 232 (285)
T ss_pred CCHHHHHHHHHHh--CCCEEEEeecccccCcCCCCccCH-HHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 3577777666543 11223556665522222333 334 34444444 4999999999766778999999999988888
Q ss_pred cccC
Q 024296 248 ACCF 251 (269)
Q Consensus 248 G~~~ 251 (269)
++.+
T Consensus 233 ~T~l 236 (285)
T PRK07709 233 NTEN 236 (285)
T ss_pred ChHH
Confidence 8754
No 153
>PRK08185 hypothetical protein; Provisional
Probab=65.30 E-value=36 Score=30.82 Aligned_cols=79 Identities=19% Similarity=0.120 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCC--ChhhHHHHHHHHHHc-CCceeeecCCCCChhHHHHHHhcCCCcccc
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKG--EWTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRIGH 247 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~--~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l~a~RIGH 247 (269)
+|+++.+.++.. .-+-.-++|+-++.-... .|..-.+.++..++. ++|+++|.|=..+.+.++.|+.+|..-|-=
T Consensus 150 ~peea~~f~~~T--gvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi 227 (283)
T PRK08185 150 DPEQAEDFVSRT--GVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGKINI 227 (283)
T ss_pred CHHHHHHHHHhh--CCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeEEEe
Confidence 566665554432 112235566666543322 233334555555554 999999999988889999999999998888
Q ss_pred cccC
Q 024296 248 ACCF 251 (269)
Q Consensus 248 G~~~ 251 (269)
++.+
T Consensus 228 ~T~l 231 (283)
T PRK08185 228 SSDM 231 (283)
T ss_pred ChHH
Confidence 8755
No 154
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=64.96 E-value=73 Score=29.65 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCC---------------hhhHHHHHH-HHHHcCCceeeecCCCC--Chh
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGE---------------WTTFLPALK-FAREQGLQITLHCGEIP--NKE 232 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~---------------~~~f~~~f~-~ar~~gl~~t~HAGE~~--~~e 232 (269)
+.+.++.+++.|.+.+.+.++.+--.|...-.. ...+..+.. .|++.++|+.+|.--.. +.+
T Consensus 22 n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV~lHLDH~~~~~~e 101 (340)
T cd00453 22 GTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLP 101 (340)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCEEEEcCCCCCCCHH
Confidence 578888999999888887777764422211111 334555444 56677999999987766 778
Q ss_pred HHHHHHhcCCCc---------ccccccC---C--------HHHHHHHHhCCCceee
Q 024296 233 EIQSMLDFLPQR---------IGHACCF---E--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 233 ~i~~ai~l~a~R---------IGHG~~~---~--------~~l~~~l~~~~I~lEi 268 (269)
.|..||+.|..- =.|-+.. + .+++++....+|.+|.
T Consensus 102 ~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VEa 157 (340)
T cd00453 102 WIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEI 157 (340)
T ss_pred HHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 899999988211 1122221 1 1378888889999984
No 155
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=64.49 E-value=33 Score=31.98 Aligned_cols=91 Identities=15% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCc-eEE---EecCCCCCCCChhhHHHHHHHHHHcC------CceeeecCCCCC-hhHHHHHHhcCCCc
Q 024296 176 METVKLALEMRDLG-VVG---IDLSGNPTKGEWTTFLPALKFAREQG------LQITLHCGEIPN-KEEIQSMLDFLPQR 244 (269)
Q Consensus 176 ~~~~~~a~~~~~~~-vvG---idl~G~E~~~~~~~f~~~f~~ar~~g------l~~t~HAGE~~~-~e~i~~ai~l~a~R 244 (269)
.+.+..+.+..-+. .+| +++=+...+++.+++.++.+.|++.| +...+|.++... .+.+..+.+.|+|.
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDa 95 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDA 95 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCE
Q ss_pred ccccccCCHHHHHHHHhCC--CceeeC
Q 024296 245 IGHACCFEEEEWRKLKSSK--IPVRIS 269 (269)
Q Consensus 245 IGHG~~~~~~l~~~l~~~~--I~lEic 269 (269)
|==+ ||-++.++++++ +++-++
T Consensus 96 viv~---Dpg~i~l~~e~~p~l~ih~S 119 (347)
T COG0826 96 VIVA---DPGLIMLARERGPDLPIHVS 119 (347)
T ss_pred EEEc---CHHHHHHHHHhCCCCcEEEe
No 156
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=64.21 E-value=38 Score=30.67 Aligned_cols=97 Identities=12% Similarity=0.047 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHH-HHHHcCCceeeecCCCCChhHHHHHHhcCCCcccc-c
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH-A 248 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGH-G 248 (269)
+.+.+..+++.|.+.+.+.+..+.-..... .+.+.+.++.. .|++.++|+.+|.--..+.+.+..|++.|-+=|=- |
T Consensus 25 n~e~~~avi~AAee~~sPvIlq~s~~~~~~-~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~Dg 103 (282)
T TIGR01858 25 NLETIQAVVETAAEMRSPVILAGTPGTFKH-AGTEYIVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVRSAMIDG 103 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCccHHhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEeecC
Confidence 578899999999998888777663322211 23455666555 55667999999998877889999999876321100 1
Q ss_pred ccCC--------HHHHHHHHhCCCceee
Q 024296 249 CCFE--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 249 ~~~~--------~~l~~~l~~~~I~lEi 268 (269)
-.++ -++.++....||.+|-
T Consensus 104 S~lp~eeNi~~T~~vv~~Ah~~gv~VEa 131 (282)
T TIGR01858 104 SHFPFAQNVKLVKEVVDFCHRQDCSVEA 131 (282)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 1111 1478888888998883
No 157
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=64.15 E-value=36 Score=31.21 Aligned_cols=76 Identities=13% Similarity=0.131 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCC-CCCCChhhHHHHHHHHHHcCCceeeec---CC------CCC---hhHHHH
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGN-PTKGEWTTFLPALKFAREQGLQITLHC---GE------IPN---KEEIQS 236 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~-E~~~~~~~f~~~f~~ar~~gl~~t~HA---GE------~~~---~e~i~~ 236 (269)
.+++++.+.++.+.+. ++..|-++|. +...+...+.++++.+++.+..+.+|+ +| +.+ .+.+..
T Consensus 72 ls~eei~~~~~~~~~~---G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~ 148 (340)
T TIGR03699 72 LSVEEILQKIEELVAY---GGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLER 148 (340)
T ss_pred CCHHHHHHHHHHHHHc---CCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHH
Confidence 5677777777666543 4555666654 333455667789999998877777775 11 001 222233
Q ss_pred HHhcCCCccccc
Q 024296 237 MLDFLPQRIGHA 248 (269)
Q Consensus 237 ai~l~a~RIGHG 248 (269)
.-+.|.+|+.|+
T Consensus 149 Lk~aG~~~~~~~ 160 (340)
T TIGR03699 149 LKEAGLDSIPGG 160 (340)
T ss_pred HHHcCCCcCCCC
Confidence 334799999874
No 158
>PRK03739 2-isopropylmalate synthase; Validated
Probab=63.77 E-value=1.5e+02 Score=29.44 Aligned_cols=119 Identities=13% Similarity=0.181 Sum_probs=75.0
Q ss_pred cCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCceEEEEEE---EeCCCCHHHHHHHHH
Q 024296 104 SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLS---IDRRETTEAAMETVK 180 (269)
Q Consensus 104 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~---~~R~~~~~~~~~~~~ 180 (269)
.-+.+.+++++.+.+.++-+++.. ....++..+..++ +.| .+++.+.++++
T Consensus 139 ~l~~t~ee~l~~~~~~v~~a~~~~-------------------------~~~~~~~~~v~f~~EDasR-~d~~~l~~~~~ 192 (552)
T PRK03739 139 VFGKDRDGIKAIAVDGARLVKELA-------------------------AKYPETEWRFEYSPESFTG-TELDFALEVCD 192 (552)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhc-------------------------ccccCceeEEEEecccCCC-CCHHHHHHHHH
Confidence 446899999999999998765411 1011111233332 223 45788888888
Q ss_pred HHHhhCCCc---eEEEecCCCCCCCChhhHHHHHHHHHHc-----CCceeeecCCCCCh--hHHHHHHhcCCCcccccc
Q 024296 181 LALEMRDLG---VVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQRIGHAC 249 (269)
Q Consensus 181 ~a~~~~~~~---vvGidl~G~E~~~~~~~f~~~f~~ar~~-----gl~~t~HAGE~~~~--e~i~~ai~l~a~RIGHG~ 249 (269)
.+.+....+ .+-|+|+-.=....|..+..++...++. ++++.+|+-=+.|- .|...|++.|++++. |+
T Consensus 193 ~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaAv~aGa~~v~-gt 270 (552)
T PRK03739 193 AVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELALMAGADRVE-GC 270 (552)
T ss_pred HHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHHHHhCCCEEE-ee
Confidence 877642222 2334443221124577888888887764 58999999777653 677888999999986 53
No 159
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=63.52 E-value=48 Score=31.46 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=51.6
Q ss_pred CceEEEecC-CCC-CCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccccCCHHHHHHHHhCCCc
Q 024296 188 LGVVGIDLS-GNP-TKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIP 265 (269)
Q Consensus 188 ~~vvGidl~-G~E-~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~~~~l~~~l~~~~I~ 265 (269)
++++|+.-. ... .......+...++.|++.|+++..|+-... .+.+...+..|+ +-.|.....++.++++ ++|+.
T Consensus 102 ~~vvglgE~md~~~v~~~~~~l~~~i~~A~~~g~~v~~Ha~g~~-~~~L~a~l~aGi-~~dH~~~~~eea~e~l-~~G~~ 178 (422)
T cd01295 102 PEVVGLGEVMDFPGVIEGDDEMLAKIQAAKKAGKPVDGHAPGLS-GEELNAYMAAGI-STDHEAMTGEEALEKL-RLGMY 178 (422)
T ss_pred CCCcEEEEeccCccccCCcHHHHHHHHHHHhCCCEEEEeCCCCC-HHHHHHHHHcCC-CCCcCCCcHHHHHHHH-HCCCE
Confidence 368887654 111 112335788899999999999999995433 355666666564 3468666677888777 57876
Q ss_pred eee
Q 024296 266 VRI 268 (269)
Q Consensus 266 lEi 268 (269)
+.+
T Consensus 179 i~i 181 (422)
T cd01295 179 VML 181 (422)
T ss_pred EEE
Confidence 643
No 160
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=63.22 E-value=1e+02 Score=28.03 Aligned_cols=78 Identities=21% Similarity=0.193 Sum_probs=47.5
Q ss_pred HHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcc--------cc
Q 024296 176 METVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI--------GH 247 (269)
Q Consensus 176 ~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RI--------GH 247 (269)
.+.++.+.+.+.+ +|.+. .|. |. +.++.+++.|+++.... .+.+....+.+.|+|-| ||
T Consensus 77 ~~~~~~~~~~~v~-~v~~~-~g~-----p~---~~i~~lk~~g~~v~~~v---~s~~~a~~a~~~GaD~Ivv~g~eagGh 143 (307)
T TIGR03151 77 DELVDLVIEEKVP-VVTTG-AGN-----PG---KYIPRLKENGVKVIPVV---ASVALAKRMEKAGADAVIAEGMESGGH 143 (307)
T ss_pred HHHHHHHHhCCCC-EEEEc-CCC-----cH---HHHHHHHHcCCEEEEEc---CCHHHHHHHHHcCCCEEEEECcccCCC
Confidence 4567777776665 55553 222 22 46777888898886544 55676777778899988 55
Q ss_pred cccC-CHHHHHHHHhC-CCce
Q 024296 248 ACCF-EEEEWRKLKSS-KIPV 266 (269)
Q Consensus 248 G~~~-~~~l~~~l~~~-~I~l 266 (269)
.-.. +-.++..+++. +||+
T Consensus 144 ~g~~~~~~ll~~v~~~~~iPv 164 (307)
T TIGR03151 144 IGELTTMALVPQVVDAVSIPV 164 (307)
T ss_pred CCCCcHHHHHHHHHHHhCCCE
Confidence 2122 23455666554 4654
No 161
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=63.12 E-value=25 Score=31.86 Aligned_cols=43 Identities=28% Similarity=0.478 Sum_probs=32.3
Q ss_pred CceEEEecCCCCCC--CChhhHHHHHHHHHHcCCceeeecCCCCC
Q 024296 188 LGVVGIDLSGNPTK--GEWTTFLPALKFAREQGLQITLHCGEIPN 230 (269)
Q Consensus 188 ~~vvGidl~G~E~~--~~~~~f~~~f~~ar~~gl~~t~HAGE~~~ 230 (269)
.+++|+-+-+.=.. .....+-++|+.|.+.|+++.+|.|=...
T Consensus 125 ~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~ 169 (293)
T COG2159 125 LGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG 169 (293)
T ss_pred cCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 47999999543222 22345789999999999999999998653
No 162
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=62.64 E-value=1.3e+02 Score=27.86 Aligned_cols=168 Identities=16% Similarity=0.129 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHH---HHHhcCCeEEEEec----------CCCCcc---cCCCCHHHHHHHHHHHHHhhhhcccccccc
Q 024296 70 DHATVTRITQEVVE---DFASENIVYLELRT----------TPKRNE---SIGMSKRSYMDAVVEGLRAVSAVDVDFASR 133 (269)
Q Consensus 70 ~~~~~~~~~~~~~~---~~~~dnV~Y~Elr~----------~p~~~~---~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~ 133 (269)
|.+++.++..++.+ ++.+-|.-.+||-. +|..+. .-|=+.+.-.+-+.+.++..++.-
T Consensus 135 t~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~v------ 208 (353)
T cd04735 135 THEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVI------ 208 (353)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHh------
Confidence 34566666666554 45567889999974 564432 223355544444444444333200
Q ss_pred ccccccccccccccccccCCCCCCceEEEEEE--EeCCCCHHHHHHHHHHHHhhCCCceEEEecCC--CCCC---CC--h
Q 024296 134 SIDVRRPVNTKNMNDACNGTRGKKIYVRLLLS--IDRRETTEAAMETVKLALEMRDLGVVGIDLSG--NPTK---GE--W 204 (269)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~--~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G--~E~~---~~--~ 204 (269)
+ .....++.+.+|+-.. +....+.++..+.++.+.+. ++--|++.+ .+.. .+ .
T Consensus 209 -------------g--~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~---GvD~I~Vs~g~~~~~~~~~~~~~ 270 (353)
T cd04735 209 -------------D--KHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADK---GLDYLHISLWDFDRKSRRGRDDN 270 (353)
T ss_pred -------------c--cccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHc---CCCEEEeccCccccccccCCcch
Confidence 0 0001344555664431 12234556665555555433 344444432 2111 11 1
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCccccccc--CCHHHHHHHHhC
Q 024296 205 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACC--FEEEEWRKLKSS 262 (269)
Q Consensus 205 ~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~--~~~~l~~~l~~~ 262 (269)
..+...++++...++++.+- |-..+++...+++.-|++-++=|-. .+|++.+.+++.
T Consensus 271 ~~~~~~ik~~~~~~iPVi~~-Ggi~t~e~ae~~l~~gaD~V~~gR~liadPdl~~k~~~G 329 (353)
T cd04735 271 QTIMELVKERIAGRLPLIAV-GSINTPDDALEALETGADLVAIGRGLLVDPDWVEKIKEG 329 (353)
T ss_pred HHHHHHHHHHhCCCCCEEEE-CCCCCHHHHHHHHHcCCChHHHhHHHHhCccHHHHHHcC
Confidence 22333333332236776654 6666788888888778888888854 389888888764
No 163
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.52 E-value=1.1e+02 Score=26.75 Aligned_cols=23 Identities=9% Similarity=0.221 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEecC
Q 024296 76 RITQEVVEDFASENIVYLELRTT 98 (269)
Q Consensus 76 ~~~~~~~~~~~~dnV~Y~Elr~~ 98 (269)
+-+..+++.+.+-|+.-+|+.++
T Consensus 27 ~~a~~~~~al~~gGi~~iEiT~~ 49 (222)
T PRK07114 27 EVAKKVIKACYDGGARVFEFTNR 49 (222)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCC
Confidence 34577888899999999999875
No 164
>PRK14847 hypothetical protein; Provisional
Probab=62.28 E-value=1.3e+02 Score=27.86 Aligned_cols=127 Identities=12% Similarity=0.103 Sum_probs=76.7
Q ss_pred eEEEEecCCCCc-ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc--eEEEE-EEE
Q 024296 91 VYLELRTTPKRN-ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI--YVRLL-LSI 166 (269)
Q Consensus 91 ~Y~Elr~~p~~~-~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~rli-~~~ 166 (269)
+.+-+-+|+... ..-+.+.+++++.+.++++-+++.. ....|. .+.+- -..
T Consensus 127 Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~-------------------------~~~~g~~~~V~~~~EDa 181 (333)
T PRK14847 127 VHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALA-------------------------DANPGTQWIYEYSPETF 181 (333)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc-------------------------cccCCCceEEEEeeecC
Confidence 455444444322 2346899999999999998876510 000122 33332 244
Q ss_pred eCCCCHHHHHHHHHHHHhhCC-C--ceEEEe---cCCCCCCCChhhHHHHHHHHHHc-----CCceeeecCCCCCh--hH
Q 024296 167 DRRETTEAAMETVKLALEMRD-L--GVVGID---LSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EE 233 (269)
Q Consensus 167 ~R~~~~~~~~~~~~~a~~~~~-~--~vvGid---l~G~E~~~~~~~f~~~f~~ar~~-----gl~~t~HAGE~~~~--e~ 233 (269)
.|. +++.+.+.++.+.+... . +..-|. .+|. ..|..+...++..++. ++++.+|+--..|- .|
T Consensus 182 sRa-d~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~---~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~GlA~AN 257 (333)
T PRK14847 182 SLA-ELDFAREVCDAVSAIWGPTPQRKMIINLPATVES---STANVYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAA 257 (333)
T ss_pred CCC-CHHHHHHHHHHHHHHhCCCccCCcEEEeCCcccc---CCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCchHHHH
Confidence 453 57777777776655421 1 112233 3332 3456677777776654 58999999877763 67
Q ss_pred HHHHHhcCCCccc
Q 024296 234 IQSMLDFLPQRIG 246 (269)
Q Consensus 234 i~~ai~l~a~RIG 246 (269)
...|++.|++||.
T Consensus 258 slaA~~aGa~~i~ 270 (333)
T PRK14847 258 AELAVLAGAERIE 270 (333)
T ss_pred HHHHHHhCCCEEE
Confidence 7888999999987
No 165
>PRK09237 dihydroorotase; Provisional
Probab=61.13 E-value=55 Score=30.39 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=40.4
Q ss_pred CCceEEEecC-CCCC-CC-ChhhHHHHHHHHHHcCCceeeecCCCC-ChhHHHHHHhcCCCcccccccCCH---------
Q 024296 187 DLGVVGIDLS-GNPT-KG-EWTTFLPALKFAREQGLQITLHCGEIP-NKEEIQSMLDFLPQRIGHACCFEE--------- 253 (269)
Q Consensus 187 ~~~vvGidl~-G~E~-~~-~~~~f~~~f~~ar~~gl~~t~HAGE~~-~~e~i~~ai~l~a~RIGHG~~~~~--------- 253 (269)
+++++||... ..+. .. ++....-....+++.|+++.+|+++.. ..+.+...+..| +-+.|.+..++
T Consensus 147 ~~~v~glk~~~~~~v~~~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~~~~~l~~~l~~g-~~~~H~~~~~~~~~~~~~~~ 225 (380)
T PRK09237 147 PDFIVGIKARMSSSVVGDNGIEPLELAKAIAAEANLPLMVHIGNPPPSLEEILELLRPG-DILTHCFNGKPNRILDEDGE 225 (380)
T ss_pred cCcEEEEEEEEecccccccCCchHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHhhccCC-CEEEecCCCCCCCccCCCCc
Confidence 3468887653 1111 11 112223333445577999999998753 223343333223 34667665433
Q ss_pred --HHHHHHHhCCCceee
Q 024296 254 --EEWRKLKSSKIPVRI 268 (269)
Q Consensus 254 --~l~~~l~~~~I~lEi 268 (269)
+......++|..+.+
T Consensus 226 ~~~~a~~~l~~G~~~~i 242 (380)
T PRK09237 226 LRPSVLEALERGVRLDV 242 (380)
T ss_pred chHHHHHHHHCCEEEEe
Confidence 334445555655543
No 166
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=61.12 E-value=1.6e+02 Score=28.32 Aligned_cols=90 Identities=16% Similarity=0.056 Sum_probs=55.7
Q ss_pred CceEEEEEEEeCCCCHHHHHHHHHHHHhh---CCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCChh
Q 024296 157 KIYVRLLLSIDRRETTEAAMETVKLALEM---RDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNKE 232 (269)
Q Consensus 157 ~i~~rli~~~~R~~~~~~~~~~~~~a~~~---~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~-~gl~~t~HAGE~~~~e 232 (269)
|-++-..+|...+ |.-....+++++.++ ..+.++==|++|-=.. ..--++.+.+|+ .++++-+|.-.++|-.
T Consensus 138 G~h~q~~i~YT~s-PvHt~e~yv~~akel~~~g~DSIciKDmaGlltP---~~ayelVk~iK~~~~~pv~lHtH~TsG~a 213 (472)
T COG5016 138 GAHVQGTISYTTS-PVHTLEYYVELAKELLEMGVDSICIKDMAGLLTP---YEAYELVKAIKKELPVPVELHTHATSGMA 213 (472)
T ss_pred CceeEEEEEeccC-CcccHHHHHHHHHHHHHcCCCEEEeecccccCCh---HHHHHHHHHHHHhcCCeeEEecccccchH
Confidence 4455444444332 122334455555553 4466777788885542 222234444444 4899999999999853
Q ss_pred --HHHHHHhcCCCccccccc
Q 024296 233 --EIQSMLDFLPQRIGHACC 250 (269)
Q Consensus 233 --~i~~ai~l~a~RIGHG~~ 250 (269)
....|++.|+|+|+-.+.
T Consensus 214 ~m~ylkAvEAGvD~iDTAis 233 (472)
T COG5016 214 EMTYLKAVEAGVDGIDTAIS 233 (472)
T ss_pred HHHHHHHHHhCcchhhhhhc
Confidence 345889999999998864
No 167
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=60.92 E-value=1.2e+02 Score=27.00 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=31.0
Q ss_pred HHHHHHHH-cCCceeeecCCCCChhHHHHHHhcCCCcccccccC--CHH
Q 024296 209 PALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEE 254 (269)
Q Consensus 209 ~~f~~ar~-~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~~~ 254 (269)
+....+++ .++++. -.|-..+++.+.+++..|++=++=|..+ +|.
T Consensus 221 ~~i~~i~~~~~ipii-~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~ 268 (296)
T cd04740 221 RMVYQVYKAVEIPII-GVGGIASGEDALEFLMAGASAVQVGTANFVDPE 268 (296)
T ss_pred HHHHHHHHhcCCCEE-EECCCCCHHHHHHHHHcCCCEEEEchhhhcChH
Confidence 44445544 378865 4666678899999999999887777543 564
No 168
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=60.68 E-value=62 Score=29.20 Aligned_cols=97 Identities=15% Similarity=0.089 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCC-ChhhHHHHHH-HHHHcCCceeeecCCCCChhHHHHHHhcCCCcccc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKG-EWTTFLPALK-FAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH 247 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~-~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGH 247 (269)
.+.+.+...++.|.+.+.+.+..+.- .+... +...+.+++. .|++..+|+.+|.--..+.+.+..|++.|.+=|--
T Consensus 26 ~n~e~~~avi~aAe~~~~Pvii~~~~--~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~ 103 (281)
T PRK06806 26 ANMEMVMGAIKAAEELNSPIILQIAE--VRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMF 103 (281)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCc--chhccCChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 35788999999999888776665532 22222 3344554443 56777999999998877788899999877542211
Q ss_pred cc-cCC--------HHHHHHHHhCCCceee
Q 024296 248 AC-CFE--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 248 G~-~~~--------~~l~~~l~~~~I~lEi 268 (269)
=- .++ .++.++..+.|+++|.
T Consensus 104 d~s~~~~~eni~~t~~v~~~a~~~gv~vea 133 (281)
T PRK06806 104 DGSHLPLEENIQKTKEIVELAKQYGATVEA 133 (281)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 10 111 2478888888998873
No 169
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=60.58 E-value=1.3e+02 Score=27.17 Aligned_cols=163 Identities=18% Similarity=0.164 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHH---HHHhcCCeEEEEecC----------CCCc---ccCCCCHHHHHHHHHHHHHhhhhcccccccc
Q 024296 70 DHATVTRITQEVVE---DFASENIVYLELRTT----------PKRN---ESIGMSKRSYMDAVVEGLRAVSAVDVDFASR 133 (269)
Q Consensus 70 ~~~~~~~~~~~~~~---~~~~dnV~Y~Elr~~----------p~~~---~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~ 133 (269)
|.+++..++.++.+ .+.+-|.--+|+-.. |..+ ...|=+.+.-.+.+.+.++..++.
T Consensus 132 t~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~------- 204 (327)
T cd02803 132 TKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREA------- 204 (327)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHH-------
Confidence 34567776666655 444579999999863 4322 122335555555555555544330
Q ss_pred ccccccccccccccccccCCCCCCceEEEEEE--EeCCCCHHHHHHHHHHHHhhCCCceEEEecCCC--CCCC-------
Q 024296 134 SIDVRRPVNTKNMNDACNGTRGKKIYVRLLLS--IDRRETTEAAMETVKLALEMRDLGVVGIDLSGN--PTKG------- 202 (269)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~--~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~--E~~~------- 202 (269)
.-.+..+.+|+-.. .....+.+++.+.++.+.+. ++-.|.+.+. +...
T Consensus 205 ------------------~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~---G~d~i~vs~g~~~~~~~~~~~~~ 263 (327)
T cd02803 205 ------------------VGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEA---GVDALHVSGGSYESPPPIIPPPY 263 (327)
T ss_pred ------------------cCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHc---CCCEEEeCCCCCcccccccCCCC
Confidence 01233444554321 11224566666666655544 3444444321 2111
Q ss_pred -ChhhHHHHHHHHHHc-CCceeeecCCCCChhHHHHHHhc-CCCccccccc--CCHHHHHHHHh
Q 024296 203 -EWTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDF-LPQRIGHACC--FEEEEWRKLKS 261 (269)
Q Consensus 203 -~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l-~a~RIGHG~~--~~~~l~~~l~~ 261 (269)
+...+.+..+.+++. ++++..- |-..+++.+.++++. +++-|+=|-. .+|++.+.+++
T Consensus 264 ~~~~~~~~~~~~ir~~~~iPVi~~-Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k~~~ 326 (327)
T cd02803 264 VPEGYFLELAEKIKKAVKIPVIAV-GGIRDPEVAEEILAEGKADLVALGRALLADPDLPNKARE 326 (327)
T ss_pred CCcchhHHHHHHHHHHCCCCEEEe-CCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHHHHhc
Confidence 112344555555554 7777554 445578889999987 7999887754 38998888765
No 170
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=60.47 E-value=59 Score=29.32 Aligned_cols=97 Identities=10% Similarity=0.059 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHH-HHHcC-CceeeecCCCCChhHHHHHHhcCCCcc---
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKF-AREQG-LQITLHCGEIPNKEEIQSMLDFLPQRI--- 245 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~-ar~~g-l~~t~HAGE~~~~e~i~~ai~l~a~RI--- 245 (269)
+.+.+...++.|.+.+.+.+..+.-......+....|.++... |++.+ +|+.+|.-...+.+.++.++..|.+=|
T Consensus 25 n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid 104 (282)
T TIGR01859 25 NLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMID 104 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEC
Confidence 5788899999999888776665533222222224567776664 56668 999999866557788899988764311
Q ss_pred -cccc-c--C--CHHHHHHHHhCCCcee
Q 024296 246 -GHAC-C--F--EEEEWRKLKSSKIPVR 267 (269)
Q Consensus 246 -GHG~-~--~--~~~l~~~l~~~~I~lE 267 (269)
.|-- . + ..+++++....++.+|
T Consensus 105 ~s~l~~~eni~~t~~v~~~a~~~gv~Ve 132 (282)
T TIGR01859 105 GSHLPFEENLALTKKVVEIAHAKGVSVE 132 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 1110 0 0 1236777777888776
No 171
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=60.08 E-value=78 Score=29.53 Aligned_cols=85 Identities=16% Similarity=0.134 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCC--CCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPT--KGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH 247 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~--~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGH 247 (269)
.++++..+.++.+.+. ++.-|-|+|.|. ..++..+.++++.+++..-.++++++- .+.+.+....+.|++|+-|
T Consensus 103 Ls~eEI~~~a~~~~~~---Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~-lt~e~~~~Lk~aGv~r~~i 178 (366)
T TIGR02351 103 LNEEEIEREIEAIKKS---GFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAIEVQP-LNEEEYKKLVEAGLDGVTV 178 (366)
T ss_pred CCHHHHHHHHHHHHhC---CCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCcccccccc-CCHHHHHHHHHcCCCEEEE
Confidence 4677777777766554 455565555443 244567888999998764334456654 3456565555689999999
Q ss_pred cccC-CHHHHHH
Q 024296 248 ACCF-EEEEWRK 258 (269)
Q Consensus 248 G~~~-~~~l~~~ 258 (269)
++.. +++..+.
T Consensus 179 ~lET~~~~~y~~ 190 (366)
T TIGR02351 179 YQETYNEKKYKK 190 (366)
T ss_pred EeecCCHHHHHh
Confidence 9865 4554443
No 172
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=60.00 E-value=38 Score=29.67 Aligned_cols=61 Identities=26% Similarity=0.394 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHh-cCC---CcccccccCCHHHHHHHHhCCCcee
Q 024296 205 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FLP---QRIGHACCFEEEEWRKLKSSKIPVR 267 (269)
Q Consensus 205 ~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~-l~a---~RIGHG~~~~~~l~~~l~~~~I~lE 267 (269)
.-|...++.|++.++|+.+|.-- ..+.+.+.+. .+. .=|=|++.-+++.++.+.+.|+-+-
T Consensus 111 ~vF~~ql~lA~~~~~pv~iH~r~--a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~~~~g~~~S 175 (255)
T PF01026_consen 111 EVFERQLELAKELNLPVSIHCRK--AHEELLEILKEYGPPNLRVIFHCFSGSPEEAKKFLDLGCYFS 175 (255)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEES--HHHHHHHHHHHTTGGTSEEEETT--S-HHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHhCCcEEEecCC--cHHHHHHHHHhccccceeEEEecCCCCHHHHHHHHhcCceEE
Confidence 34888899999999999999854 2355677765 553 2377887778877777777775543
No 173
>PF04262 Glu_cys_ligase: Glutamate-cysteine ligase ; InterPro: IPR007370 This is a group of bacterial glutamate-cysteine ligases that carry out the first step of the glutathione biosynthesis pathway according to the following equation: ATP + L-glutamate + L-cysteine = ADP + phosphate + L-glutamyl-L-cysteine (L-aminohexanoate can replace glutamate). ; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 3LN6_A 3LN7_B 1VA6_B 2D33_B 1V4G_B 2D32_A 3NZT_A.
Probab=59.73 E-value=8.1 Score=36.41 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=19.4
Q ss_pred HHHHHHhcCCeEEEEec-CCCCcccCCCCHHHH
Q 024296 81 VVEDFASENIVYLELRT-TPKRNESIGMSKRSY 112 (269)
Q Consensus 81 ~~~~~~~dnV~Y~Elr~-~p~~~~~~g~~~~~~ 112 (269)
-++++.++||.|+|+|. +.......|++.+++
T Consensus 311 ~l~~L~~~Gi~YiE~R~lDlnPf~~~GI~~~~l 343 (377)
T PF04262_consen 311 PLDALLRRGIEYIELRSLDLNPFSPIGISEDQL 343 (377)
T ss_dssp CHHHHHHH---EEEEEEEE--TTSTTSS-HHHH
T ss_pred hHHHHHhcCCeEEEEeeccCCCCCcCCCCHHHH
Confidence 47888999999999994 333345678887664
No 174
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=59.66 E-value=51 Score=29.88 Aligned_cols=99 Identities=9% Similarity=0.064 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHH-HHHcC--CceeeecCCCCChhHHHHHHhcCCCccc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKF-AREQG--LQITLHCGEIPNKEEIQSMLDFLPQRIG 246 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~-ar~~g--l~~t~HAGE~~~~e~i~~ai~l~a~RIG 246 (269)
.+.+.+...++.|.+.+.+.++.+.-...+..++...+.++.+. |++.. +|+.+|.--..+.+.+..|++.|-+=+=
T Consensus 26 ~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~GftSVM 105 (286)
T PRK08610 26 NNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVM 105 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 35788899999998888877776644332222234556666664 44445 8999999887788999999987522110
Q ss_pred -ccccCC--------HHHHHHHHhCCCceee
Q 024296 247 -HACCFE--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 247 -HG~~~~--------~~l~~~l~~~~I~lEi 268 (269)
=|-.++ -+++++....++.+|-
T Consensus 106 ~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEa 136 (286)
T PRK08610 106 IDASHSPFEENVATTKKVVEYAHEKGVSVEA 136 (286)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 011111 1368888889999883
No 175
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=59.21 E-value=52 Score=29.84 Aligned_cols=97 Identities=10% Similarity=0.066 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHH-HHHHcCCceeeecCCCCChhHHHHHHhcCCCcccc-c
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH-A 248 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGH-G 248 (269)
+.+.+...++.|.+.+.+.+..+.-..-. -.+.+.+.++.. .|++.++|+.+|.--..+.+.+..|++.|-+=|=- |
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~s~~~~~-~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~Dg 105 (286)
T PRK12738 27 NAETIQAILEVCSEMRSPVILAGTPGTFK-HIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDG 105 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcchhh-hCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEeecC
Confidence 58889999999999888777765322111 123344555444 56667999999998877889999999865221100 1
Q ss_pred ccCC--------HHHHHHHHhCCCceee
Q 024296 249 CCFE--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 249 ~~~~--------~~l~~~l~~~~I~lEi 268 (269)
-.++ .+++++....+|.+|-
T Consensus 106 S~lp~eeNi~~T~evv~~Ah~~gv~VEa 133 (286)
T PRK12738 106 SHFPFAENVKLVKSVVDFCHSQDCSVEA 133 (286)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 1111 2478888888999883
No 176
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=58.87 E-value=48 Score=30.04 Aligned_cols=98 Identities=11% Similarity=0.033 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHH-HHHHcCCceeeecCCCCChhHHHHHHhcCCCcccc-
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH- 247 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGH- 247 (269)
.+.+.+...++.|.+.+.+.+..+.-..... .+...+.++.. .|++..+|+.+|.--..+.+.+..|++.|-+=+=-
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~~~~~~~~-~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~D 104 (284)
T PRK09195 26 HNLETMQVVVETAAELHSPVIIAGTPGTFSY-AGTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGVRSVMID 104 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcChhHHhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEeC
Confidence 3578899999999998887777664322211 22345666555 56667999999998877889999999876321100
Q ss_pred cccCC--------HHHHHHHHhCCCceee
Q 024296 248 ACCFE--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 248 G~~~~--------~~l~~~l~~~~I~lEi 268 (269)
|-.++ -+++++....||.+|-
T Consensus 105 gS~l~~eeNi~~T~~vv~~Ah~~gv~VEa 133 (284)
T PRK09195 105 GSHLPFAQNISLVKEVVDFCHRFDVSVEA 133 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 11121 1478888888998883
No 177
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=58.48 E-value=62 Score=29.37 Aligned_cols=80 Identities=20% Similarity=0.145 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCChhHHHHHHhcCCCccccc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 248 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~-~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG 248 (269)
.+|+++.+.++.. .-+..=|+|+-+-.-.++.|..=.+.++..++ .++|+++|.|=..+.+.++.++.+|..-|-=+
T Consensus 156 T~peea~~Fv~~T--gvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~ 233 (286)
T PRK08610 156 ADPKECQELVEKT--GIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKINVN 233 (286)
T ss_pred CCHHHHHHHHHHH--CCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeEEEec
Confidence 3677777776532 11223455555522223333332234444444 49999999997667789999999999888887
Q ss_pred ccC
Q 024296 249 CCF 251 (269)
Q Consensus 249 ~~~ 251 (269)
+.+
T Consensus 234 T~l 236 (286)
T PRK08610 234 TEN 236 (286)
T ss_pred cHH
Confidence 754
No 178
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=58.37 E-value=53 Score=30.38 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=28.9
Q ss_pred ceEEEecCCCCC----CC---ChhhHHHHHHHHHHcCCceeeecCCC
Q 024296 189 GVVGIDLSGNPT----KG---EWTTFLPALKFAREQGLQITLHCGEI 228 (269)
Q Consensus 189 ~vvGidl~G~E~----~~---~~~~f~~~f~~ar~~gl~~t~HAGE~ 228 (269)
|+.||-+--... .. +...+.++|+.+++.|+++.+|++..
T Consensus 92 Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~ 138 (341)
T TIGR00856 92 VVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVT 138 (341)
T ss_pred CeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCC
Confidence 688887642111 11 22468899999999999999999875
No 179
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=58.30 E-value=42 Score=28.77 Aligned_cols=53 Identities=30% Similarity=0.449 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecCCCCCCCCh--hhHH-HHHHHHHHcCCceeeecC
Q 024296 172 TEAAMETVKLALEMRDLGVVGIDLSGNPTKGEW--TTFL-PALKFAREQGLQITLHCG 226 (269)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~--~~f~-~~f~~ar~~gl~~t~HAG 226 (269)
++.+.+.++.+.. ..+++||-+...-....+ ..+. ++|+.|.+.|+++.+|.|
T Consensus 83 ~~~~~~~l~~~~~--~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 83 PEDAVEELERALQ--ELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp HHHHHHHHHHHHH--TTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEES
T ss_pred chhHHHHHHHhcc--ccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeecc
Confidence 5555555555542 346888877543332222 3444 999999999999999987
No 180
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=58.12 E-value=1.1e+02 Score=25.51 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=65.2
Q ss_pred EEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCC
Q 024296 163 LLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP 242 (269)
Q Consensus 163 i~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a 242 (269)
++-+.|..+++.+.+.++.+.+..-+ ++=+++.+.. -.+.++..++..=.+.+=+|-..+++.+.+++.+|+
T Consensus 6 ~~~i~r~~~~~~~~~~~~~l~~~G~~-~vev~~~~~~-------~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga 77 (190)
T cd00452 6 LVAVLRGDDAEDALALAEALIEGGIR-AIEITLRTPG-------ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGA 77 (190)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCC-EEEEeCCChh-------HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC
Confidence 55667999999988888877754221 4555544322 233555555542135555777778899999999999
Q ss_pred CcccccccCCHHHHHHHHhCCCcee
Q 024296 243 QRIGHACCFEEEEWRKLKSSKIPVR 267 (269)
Q Consensus 243 ~RIGHG~~~~~~l~~~l~~~~I~lE 267 (269)
+=| |.-..++++.+..++.++++.
T Consensus 78 ~~i-~~p~~~~~~~~~~~~~~~~~i 101 (190)
T cd00452 78 QFI-VSPGLDPEVVKAANRAGIPLL 101 (190)
T ss_pred CEE-EcCCCCHHHHHHHHHcCCcEE
Confidence 877 665678888888888877653
No 181
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=57.80 E-value=76 Score=27.35 Aligned_cols=83 Identities=19% Similarity=0.151 Sum_probs=52.9
Q ss_pred HHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccccC--CHHH
Q 024296 178 TVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEE 255 (269)
Q Consensus 178 ~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~~~l 255 (269)
.++.+....-+.+.-.|+.+.+... ...+..+-+.++..++++.++.|= .+.+.+..++..|++++-=|... +|++
T Consensus 37 ~a~~~~~~G~~~l~i~dl~~~~~~~-~~~~~~i~~i~~~~~~~l~v~GGi-~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~ 114 (241)
T PRK13585 37 VAKRWVDAGAETLHLVDLDGAFEGE-RKNAEAIEKIIEAVGVPVQLGGGI-RSAEDAASLLDLGVDRVILGTAAVENPEI 114 (241)
T ss_pred HHHHHHHcCCCEEEEEechhhhcCC-cccHHHHHHHHHHcCCcEEEcCCc-CCHHHHHHHHHcCCCEEEEChHHhhChHH
Confidence 4444444444568888998755332 122333334455679999997665 46888888999999998666543 5666
Q ss_pred HHHHHhC
Q 024296 256 WRKLKSS 262 (269)
Q Consensus 256 ~~~l~~~ 262 (269)
++.+.+.
T Consensus 115 ~~~i~~~ 121 (241)
T PRK13585 115 VRELSEE 121 (241)
T ss_pred HHHHHHH
Confidence 5555544
No 182
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=57.70 E-value=1.5e+02 Score=27.07 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=31.9
Q ss_pred CCceeeecCCCCChhHHHHHHhcCCCcccccccC---CHHHHHHHHh
Q 024296 218 GLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF---EEEEWRKLKS 261 (269)
Q Consensus 218 gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~---~~~l~~~l~~ 261 (269)
++++.. .|=..+++.+.+.+..||+.+.=|..+ .|.+.+.+.+
T Consensus 280 ~ipIi~-~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i~~ 325 (327)
T cd04738 280 KIPIIG-VGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKRIKR 325 (327)
T ss_pred CCcEEE-ECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHHHHh
Confidence 477654 566667888999888899999888653 3887777654
No 183
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=57.44 E-value=21 Score=31.42 Aligned_cols=54 Identities=30% Similarity=0.347 Sum_probs=41.2
Q ss_pred HHHHHHHHhhCCCceEEEecCCCCCC---CChhhHHHHHHHHHHc-CCceeeecCCCC
Q 024296 176 METVKLALEMRDLGVVGIDLSGNPTK---GEWTTFLPALKFAREQ-GLQITLHCGEIP 229 (269)
Q Consensus 176 ~~~~~~a~~~~~~~vvGidl~G~E~~---~~~~~f~~~f~~ar~~-gl~~t~HAGE~~ 229 (269)
.+.+..+.+....|.-|+=|+|.-+. -|.+.|.+.++..++. ||.+++|.|=..
T Consensus 42 ~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~~l~inaHvGfvd 99 (275)
T COG1856 42 KSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERTGLLINAHVGFVD 99 (275)
T ss_pred HHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHHhhCeEEEEEeeecc
Confidence 34555566666778999999875543 3778999999888875 999999999754
No 184
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=57.31 E-value=83 Score=26.86 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=61.4
Q ss_pred EEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCC
Q 024296 163 LLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP 242 (269)
Q Consensus 163 i~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a 242 (269)
|+-+.|..+++++.+.++...+- ++-.+.+.-+- +.-.++++..++..=.+.+=||=..+++.+..|++.|+
T Consensus 10 iiaVir~~~~~~a~~~~~al~~g---Gi~~iEiT~~t-----~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA 81 (196)
T PF01081_consen 10 IIAVIRGDDPEDAVPIAEALIEG---GIRAIEITLRT-----PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGA 81 (196)
T ss_dssp EEEEETTSSGGGHHHHHHHHHHT---T--EEEEETTS-----TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-
T ss_pred EEEEEEcCCHHHHHHHHHHHHHC---CCCEEEEecCC-----ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCC
Confidence 66778999999888888876653 44444443211 23445566555442246678888889999999999998
Q ss_pred CcccccccCCHHHHHHHHhCCCce
Q 024296 243 QRIGHACCFEEEEWRKLKSSKIPV 266 (269)
Q Consensus 243 ~RIGHG~~~~~~l~~~l~~~~I~l 266 (269)
+=|=-= .++|+++++.++++|++
T Consensus 82 ~FivSP-~~~~~v~~~~~~~~i~~ 104 (196)
T PF01081_consen 82 QFIVSP-GFDPEVIEYAREYGIPY 104 (196)
T ss_dssp SEEEES-S--HHHHHHHHHHTSEE
T ss_pred CEEECC-CCCHHHHHHHHHcCCcc
Confidence 765322 46899999999999875
No 185
>TIGR01434 glu_cys_ligase glutamate--cysteine ligase. serve to protect against oxidative damage and participate in a biosynthetic or detoxification reactions.
Probab=57.29 E-value=13 Score=36.54 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=23.8
Q ss_pred HHHHHHhcCCeEEEEec-CCCCcccCCCCHHH
Q 024296 81 VVEDFASENIVYLELRT-TPKRNESIGMSKRS 111 (269)
Q Consensus 81 ~~~~~~~dnV~Y~Elr~-~p~~~~~~g~~~~~ 111 (269)
-++.+.+.||.|+|+|. +.......|++.++
T Consensus 310 ~l~aL~~~GVeYIEvR~lDlnPf~~~GI~~~q 341 (512)
T TIGR01434 310 PSDALLRRGIEYVEVRSLDINPFSPIGIDEQQ 341 (512)
T ss_pred hHHHHHhcCCcEEEEeeccCCCCCcCCCCHHH
Confidence 67888999999999994 33334567888766
No 186
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=57.25 E-value=1e+02 Score=28.06 Aligned_cols=89 Identities=13% Similarity=0.126 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhhCCC--ceEEEecCCCCCCCChhhHHHHHHHHHHc--CCceeeecCCCCC-hhHHHHHHhcCCCcc
Q 024296 171 TTEAAMETVKLALEMRDL--GVVGIDLSGNPTKGEWTTFLPALKFAREQ--GLQITLHCGEIPN-KEEIQSMLDFLPQRI 245 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~--~vvGidl~G~E~~~~~~~f~~~f~~ar~~--gl~~t~HAGE~~~-~e~i~~ai~l~a~RI 245 (269)
++++..+.++.+.+..-. .++|+|.....+ .....|.++++..++. ++.+.+-..+..+ .+.+....+.|++.+
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d-~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~ 170 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDLED-GGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDVY 170 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCccc-ccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchhh
Confidence 456666666665553222 256666542222 2346789999988885 4555554443332 233344445799999
Q ss_pred cccccCCHHHHHHHH
Q 024296 246 GHACCFEEEEWRKLK 260 (269)
Q Consensus 246 GHG~~~~~~l~~~l~ 260 (269)
+|++...|.+++.|+
T Consensus 171 ~hnlEt~~~l~~~vr 185 (302)
T TIGR00510 171 NHNLETVERLTPFVR 185 (302)
T ss_pred cccccchHHHHHHhC
Confidence 999754454444443
No 187
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=57.16 E-value=54 Score=27.88 Aligned_cols=77 Identities=17% Similarity=0.327 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceE
Q 024296 112 YMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVV 191 (269)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vv 191 (269)
+...+.++++++.+ +.++.+.++ .....+++.-.+.++.+.....++|+
T Consensus 12 ~~~~~~~g~~~~a~-----------------------------~~g~~~~~~--~~~~~d~~~q~~~i~~~i~~~~d~Ii 60 (257)
T PF13407_consen 12 FWQQVIKGAKAAAK-----------------------------ELGYEVEIV--FDAQNDPEEQIEQIEQAISQGVDGII 60 (257)
T ss_dssp HHHHHHHHHHHHHH-----------------------------HHTCEEEEE--EESTTTHHHHHHHHHHHHHTTESEEE
T ss_pred HHHHHHHHHHHHHH-----------------------------HcCCEEEEe--CCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence 67788888877643 346665555 56667777777888888877666655
Q ss_pred EEecCCCCCCCChhhHHHHHHHHHHcCCceee-ecC
Q 024296 192 GIDLSGNPTKGEWTTFLPALKFAREQGLQITL-HCG 226 (269)
Q Consensus 192 Gidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~-HAG 226 (269)
+.... +....+.++++++.|+|++. +.+
T Consensus 61 -v~~~~------~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 61 -VSPVD------PDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp -EESSS------TTTTHHHHHHHHHTTSEEEEESST
T ss_pred -ecCCC------HHHHHHHHHHHhhcCceEEEEecc
Confidence 32221 23466889999999999876 444
No 188
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=56.64 E-value=1.4e+02 Score=26.34 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=50.6
Q ss_pred ceEEEecCCCCCCC---C----hhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHh-cCCC--cccccccCCHHHHHH
Q 024296 189 GVVGIDLSGNPTKG---E----WTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FLPQ--RIGHACCFEEEEWRK 258 (269)
Q Consensus 189 ~vvGidl~G~E~~~---~----~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~-l~a~--RIGHG~~~~~~l~~~ 258 (269)
.++|||=.|-.... + -.-|...++.|++.++|+.+|+-. ..+.+.+.+. .+.. -|=|++.-+++.++.
T Consensus 91 ~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~--a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~ 168 (258)
T PRK11449 91 KVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRR--THDKLAMHLKRHDLPRTGVVHGFSGSLQQAER 168 (258)
T ss_pred CEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecC--ccHHHHHHHHhcCCCCCeEEEcCCCCHHHHHH
Confidence 47777655544221 1 134777888999999999999955 2355666665 4432 377777777777777
Q ss_pred HHhCCCce
Q 024296 259 LKSSKIPV 266 (269)
Q Consensus 259 l~~~~I~l 266 (269)
+.+.|.-+
T Consensus 169 ~l~~G~~i 176 (258)
T PRK11449 169 FVQLGYKI 176 (258)
T ss_pred HHHCCCEE
Confidence 77776544
No 189
>PRK02107 glutamate--cysteine ligase; Provisional
Probab=56.56 E-value=13 Score=36.49 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=23.8
Q ss_pred HHHHHHhcCCeEEEEec-CCCCcccCCCCHHH
Q 024296 81 VVEDFASENIVYLELRT-TPKRNESIGMSKRS 111 (269)
Q Consensus 81 ~~~~~~~dnV~Y~Elr~-~p~~~~~~g~~~~~ 111 (269)
-++.+.+.||.|+|+|. +.......|++.++
T Consensus 314 ~l~aL~~~GIeYIEvR~lDlNPf~~~GI~~~q 345 (523)
T PRK02107 314 PSDALARRGVEYIEVRSLDINPFSPIGIDEEQ 345 (523)
T ss_pred HHHHHHhcCCcEEEEeeccCCCCCcCCCCHHH
Confidence 67888999999999994 33334567888766
No 190
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=56.19 E-value=70 Score=28.65 Aligned_cols=69 Identities=19% Similarity=0.052 Sum_probs=49.7
Q ss_pred CCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccccC--C----HHHHHHHH
Q 024296 187 DLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--E----EEEWRKLK 260 (269)
Q Consensus 187 ~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~----~~l~~~l~ 260 (269)
-.++.-|||.|.+ +.. .++.+...+.++++.+=-|=. .+.+...+++|++|+-=|..+ + |++++.+.
T Consensus 57 a~~lHvVDLdgg~----~~n-~~~i~~i~~~~~~vqvGGGIR--~e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~ 129 (262)
T PLN02446 57 LTGGHVIMLGADD----ASL-AAALEALRAYPGGLQVGGGVN--SENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLV 129 (262)
T ss_pred CCEEEEEECCCCC----ccc-HHHHHHHHhCCCCEEEeCCcc--HHHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHH
Confidence 3568999997722 222 455555555678888877764 388999999999999999754 5 88877776
Q ss_pred hC
Q 024296 261 SS 262 (269)
Q Consensus 261 ~~ 262 (269)
++
T Consensus 130 ~~ 131 (262)
T PLN02446 130 RL 131 (262)
T ss_pred HH
Confidence 54
No 191
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=56.17 E-value=68 Score=29.09 Aligned_cols=78 Identities=21% Similarity=0.170 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecC-CCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCChhHHHHHHhcCCCccccc
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLS-GNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 248 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~-G~E~~~~~~~f~~~f~~ar~-~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG 248 (269)
+|+++.+.++.. .-+..=|+|+-+ |.-...|--+| +.++..++ -++|+++|.|=..+.+.++.|+.+|..-|-=+
T Consensus 156 ~peea~~Fv~~T--gvD~LAvaiGt~HG~Y~~~p~Ldf-d~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~ 232 (286)
T PRK12738 156 DPQEAKRFVELT--GVDSLAVAIGTAHGLYSKTPKIDF-QRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVA 232 (286)
T ss_pred CHHHHHHHHHHh--CCCEEEeccCcccCCCCCCCcCCH-HHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 477666665432 112224455554 33322222333 34444444 49999999998888899999999999988888
Q ss_pred ccC
Q 024296 249 CCF 251 (269)
Q Consensus 249 ~~~ 251 (269)
+.+
T Consensus 233 T~l 235 (286)
T PRK12738 233 TEL 235 (286)
T ss_pred cHH
Confidence 755
No 192
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=56.01 E-value=1.4e+02 Score=25.91 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCeEEEEecC
Q 024296 78 TQEVVEDFASENIVYLELRTT 98 (269)
Q Consensus 78 ~~~~~~~~~~dnV~Y~Elr~~ 98 (269)
..++++.+.+-||.++|+-+.
T Consensus 21 ~~~i~~~L~~~GV~~IEvg~~ 41 (265)
T cd03174 21 KLEIAEALDEAGVDSIEVGSG 41 (265)
T ss_pred HHHHHHHHHHcCCCEEEeccC
Confidence 356777788889999999764
No 193
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=55.81 E-value=1e+02 Score=24.91 Aligned_cols=86 Identities=16% Similarity=0.089 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHhhC-CCc-eEEEecCCCCCCCChh-hHHHHHHHHHHcC-----Cceeeec-CCCCChhHHHHHHh
Q 024296 169 RETTEAAMETVKLALEMR-DLG-VVGIDLSGNPTKGEWT-TFLPALKFAREQG-----LQITLHC-GEIPNKEEIQSMLD 239 (269)
Q Consensus 169 ~~~~~~~~~~~~~a~~~~-~~~-vvGidl~G~E~~~~~~-~f~~~f~~ar~~g-----l~~t~HA-GE~~~~e~i~~ai~ 239 (269)
..+++...+.++.+.... ..+ +..+-+.|.|....+. .+.++++.+++.+ ..+++.. |-..+.+.+....+
T Consensus 29 ~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~ 108 (216)
T smart00729 29 SRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKE 108 (216)
T ss_pred HHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHHHH
Confidence 334555666666554332 122 5677777777654443 5888888888763 3333332 12234555666666
Q ss_pred cCCCcccccccC-CHH
Q 024296 240 FLPQRIGHACCF-EEE 254 (269)
Q Consensus 240 l~a~RIGHG~~~-~~~ 254 (269)
.|.+++..++.. +++
T Consensus 109 ~~~~~i~isl~~~~~~ 124 (216)
T smart00729 109 AGVNRVSLGVQSGSDE 124 (216)
T ss_pred cCCCeEEEecccCCHH
Confidence 888899999863 443
No 194
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=55.24 E-value=82 Score=28.57 Aligned_cols=97 Identities=11% Similarity=0.080 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHH-HcC--CceeeecCCCCChhHHHHHHhcCCCccc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAR-EQG--LQITLHCGEIPNKEEIQSMLDFLPQRIG 246 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar-~~g--l~~t~HAGE~~~~e~i~~ai~l~a~RIG 246 (269)
.+.+.+...++.|.+.+.+.+..+.-..-....+.+.+.++.+.+. +.+ +|+.+|.--..+.+.+..|++.|-+=
T Consensus 26 ~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftS-- 103 (285)
T PRK07709 26 NNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTS-- 103 (285)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCE--
Confidence 3588899999999998888777663322221123455666666443 444 89999998877889999998875221
Q ss_pred ccc---cCC--------HHHHHHHHhCCCceee
Q 024296 247 HAC---CFE--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 247 HG~---~~~--------~~l~~~l~~~~I~lEi 268 (269)
.-+ .++ -+++++....|+.+|-
T Consensus 104 VM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEa 136 (285)
T PRK07709 104 VMIDASHHPFEENVETTKKVVEYAHARNVSVEA 136 (285)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 111 111 1478888888999883
No 195
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=54.59 E-value=1.3e+02 Score=25.37 Aligned_cols=127 Identities=14% Similarity=0.150 Sum_probs=68.9
Q ss_pred HHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCceEE
Q 024296 82 VEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVR 161 (269)
Q Consensus 82 ~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r 161 (269)
++++.++|+.=+++-.+...... | ..+++.+-+.+..+. .. ++.++
T Consensus 75 ve~A~~~GAdevdvv~~~g~~~~-~-~~~~~~~ei~~v~~~------------------------------~~--g~~lk 120 (203)
T cd00959 75 AREAIADGADEIDMVINIGALKS-G-DYEAVYEEIAAVVEA------------------------------CG--GAPLK 120 (203)
T ss_pred HHHHHHcCCCEEEEeecHHHHhC-C-CHHHHHHHHHHHHHh------------------------------cC--CCeEE
Confidence 67788899988888776543211 1 222233332222221 11 56677
Q ss_pred EEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcC
Q 024296 162 LLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFL 241 (269)
Q Consensus 162 li~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~ 241 (269)
+|+-.-. .+++......+.+.+..-+ ++=.. .|....+....-...|.++-+..+++.+=-|-. +.+...+.+.+|
T Consensus 121 vI~e~~~-l~~~~i~~a~ria~e~GaD-~IKTs-TG~~~~~at~~~v~~~~~~~~~~v~ik~aGGik-t~~~~l~~~~~g 196 (203)
T cd00959 121 VILETGL-LTDEEIIKACEIAIEAGAD-FIKTS-TGFGPGGATVEDVKLMKEAVGGRVGVKAAGGIR-TLEDALAMIEAG 196 (203)
T ss_pred EEEecCC-CCHHHHHHHHHHHHHhCCC-EEEcC-CCCCCCCCCHHHHHHHHHHhCCCceEEEeCCCC-CHHHHHHHHHhC
Confidence 6654432 3466666677777765444 22222 222212111222334443333567777776665 567777888889
Q ss_pred CCccc
Q 024296 242 PQRIG 246 (269)
Q Consensus 242 a~RIG 246 (269)
++|||
T Consensus 197 ~~riG 201 (203)
T cd00959 197 ATRIG 201 (203)
T ss_pred hhhcc
Confidence 99998
No 196
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=54.22 E-value=73 Score=28.18 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=57.8
Q ss_pred HHHHHHhhC---CCceEEEecCCCCCCCChhhHHH-HHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccccC--
Q 024296 178 TVKLALEMR---DLGVVGIDLSGNPTKGEWTTFLP-ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF-- 251 (269)
Q Consensus 178 ~~~~a~~~~---~~~vvGidl~G~E~~~~~~~f~~-~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~-- 251 (269)
.+++|..|. -+.+|=+|+.....+. ....+ +-+-|.+-.+|+|+=.|= .+.+.++..+..|||.|.=...+
T Consensus 32 pVelA~~Y~e~GADElvFlDItAs~~gr--~~~~~vv~r~A~~vfiPltVGGGI-~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 32 PVELAKRYNEEGADELVFLDITASSEGR--ETMLDVVERVAEQVFIPLTVGGGI-RSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred hHHHHHHHHHcCCCeEEEEecccccccc--hhHHHHHHHHHhhceeeeEecCCc-CCHHHHHHHHHcCCCeeeeChhHhc
Confidence 445565553 3569999998655543 22333 334555669999997765 46788898889999999887754
Q ss_pred CHHHHHHHHhC
Q 024296 252 EEEEWRKLKSS 262 (269)
Q Consensus 252 ~~~l~~~l~~~ 262 (269)
+|+++..++++
T Consensus 109 ~p~lI~~~a~~ 119 (256)
T COG0107 109 DPELITEAADR 119 (256)
T ss_pred ChHHHHHHHHH
Confidence 79999888765
No 197
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=53.71 E-value=35 Score=30.85 Aligned_cols=79 Identities=18% Similarity=0.094 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCChhHHHHHHhcCCCcccccc
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 249 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~ 249 (269)
+|+++.+.++.. .-+..=|+|+-+-.-.+..|..=.+.++..++. ++|+++|.|=..+.+.++.|+..|..-|-=++
T Consensus 154 ~peea~~Fv~~T--gvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 231 (282)
T TIGR01858 154 DPQEAKEFVEAT--GVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVAT 231 (282)
T ss_pred CHHHHHHHHHHH--CcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 466666555422 112234455555222233344333455555544 99999999988888999999999999888887
Q ss_pred cC
Q 024296 250 CF 251 (269)
Q Consensus 250 ~~ 251 (269)
.+
T Consensus 232 ~l 233 (282)
T TIGR01858 232 EL 233 (282)
T ss_pred HH
Confidence 65
No 198
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=53.36 E-value=1.4e+02 Score=26.12 Aligned_cols=72 Identities=11% Similarity=0.029 Sum_probs=50.5
Q ss_pred CCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCChhHHHHHHhcCCCcccccccC--CHHHHHHHHhC
Q 024296 187 DLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSS 262 (269)
Q Consensus 187 ~~~vvGidl~G~E~~~~~~~f~~~f~~ar~-~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~~~l~~~l~~~ 262 (269)
-+.+.=+||.|.+... .. .++.+++.+ ...|+.+=.|= .+.+.+...+..|++|+-=|... +|++++.+.++
T Consensus 44 a~~lhivDLd~a~~~~--~n-~~~i~~i~~~~~~~v~vGGGI-rs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~ 118 (232)
T PRK13586 44 YTRIHVVDLDAAEGVG--NN-EMYIKEISKIGFDWIQVGGGI-RDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVRE 118 (232)
T ss_pred CCEEEEEECCCcCCCc--ch-HHHHHHHHhhCCCCEEEeCCc-CCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHH
Confidence 3679999999886322 22 266766665 34477776654 45788888889999999878654 78877776654
No 199
>PRK13753 dihydropteroate synthase; Provisional
Probab=53.29 E-value=1.3e+02 Score=27.28 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCC-----Ch-hh---HHHHHHHHHHcCCceeeecCCCCChhHHHHHHhc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKG-----EW-TT---FLPALKFAREQGLQITLHCGEIPNKEEIQSMLDF 240 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~-----~~-~~---f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l 240 (269)
.+++.+.+. +..+..+|.--||+.|.-... ++ ++ ..++++.+++.+.++.+ .+..++-+..|++.
T Consensus 22 ~~~d~a~~~---a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~ISI---DT~~~~va~~al~a 95 (279)
T PRK13753 22 LDPAGAVTA---AIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSI---DSFQPETQRYALKR 95 (279)
T ss_pred CCHHHHHHH---HHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCcEEE---ECCCHHHHHHHHHc
Confidence 345544444 444445566677776644421 11 23 44888888887877766 44678888899998
Q ss_pred CCCcccc--cccCCHHHHHHHHhCCCceee
Q 024296 241 LPQRIGH--ACCFEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 241 ~a~RIGH--G~~~~~~l~~~l~~~~I~lEi 268 (269)
|++=|-- |.. +|.+.+.+++.+.++=+
T Consensus 96 GadiINDVsg~~-d~~~~~vva~~~~~vVl 124 (279)
T PRK13753 96 GVGYLNDIQGFP-DPALYPDIAEADCRLVV 124 (279)
T ss_pred CCCEEEeCCCCC-chHHHHHHHHcCCCEEE
Confidence 8875432 332 67888888888777643
No 200
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=53.25 E-value=76 Score=28.72 Aligned_cols=88 Identities=18% Similarity=0.147 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecC-CCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCChhHHHHHHhcCCCccccc
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLS-GNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 248 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~-G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG 248 (269)
+|+++.+.++.. .-+..=|+|+-+ |.-...|--+| +.++..++. ++|+++|.|=..+.+.++.|+.+|...|-=+
T Consensus 156 ~peeA~~Fv~~T--gvD~LAvaiGt~HG~y~~~p~Ld~-~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~ 232 (284)
T PRK12737 156 NPDAAAEFVERT--GIDSLAVAIGTAHGLYKGEPKLDF-ERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVA 232 (284)
T ss_pred CHHHHHHHHHHh--CCCEEeeccCccccccCCCCcCCH-HHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeC
Confidence 577776666542 112234455554 43332222334 344444443 8999999998778899999999999988888
Q ss_pred ccCC----HHHHHHHHh
Q 024296 249 CCFE----EEEWRKLKS 261 (269)
Q Consensus 249 ~~~~----~~l~~~l~~ 261 (269)
+.+. ..+.+.+.+
T Consensus 233 T~l~~a~~~~~~~~~~~ 249 (284)
T PRK12737 233 TELKIAFSDAVKKYFYE 249 (284)
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 7552 334455544
No 201
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=53.01 E-value=75 Score=29.27 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCC-CCChhhHHHHHHHHHHcCCceeeec-------------CCCCChhHHH
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPT-KGEWTTFLPALKFAREQGLQITLHC-------------GEIPNKEEIQ 235 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~-~~~~~~f~~~f~~ar~~gl~~t~HA-------------GE~~~~e~i~ 235 (269)
.++++..+.++.+.+. ++.-|-++|.+. ..+...+.++++..++.+..+.+|+ |.. ..+.+.
T Consensus 70 ls~eeI~e~~~~~~~~---G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~-~~e~l~ 145 (343)
T TIGR03551 70 LSLEEIAERAAEAWKA---GATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLS-VEEALK 145 (343)
T ss_pred CCHHHHHHHHHHHHHC---CCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCC-HHHHHH
Confidence 5788888888777664 455666665433 3455667889999998865555665 221 234444
Q ss_pred HHHhcCCCcc
Q 024296 236 SMLDFLPQRI 245 (269)
Q Consensus 236 ~ai~l~a~RI 245 (269)
..-+.|.+|+
T Consensus 146 ~LkeAGl~~i 155 (343)
T TIGR03551 146 RLKEAGLDSM 155 (343)
T ss_pred HHHHhCcccc
Confidence 4445788888
No 202
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.92 E-value=1.5e+02 Score=25.54 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=65.4
Q ss_pred EEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCC
Q 024296 163 LLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP 242 (269)
Q Consensus 163 i~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a 242 (269)
++-+.|..+++++.+.++.+.+..=+ ++=|.+..+ .-.+.++.+++..=.+.+=||=..+++.++.+++.|+
T Consensus 17 ~iaV~r~~~~~~a~~i~~al~~~Gi~-~iEitl~~~-------~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA 88 (212)
T PRK05718 17 VVPVIVINKLEDAVPLAKALVAGGLP-VLEVTLRTP-------AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGA 88 (212)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCC-EEEEecCCc-------cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCC
Confidence 66678999999999888877764211 333333322 2445566665543257788888888999999999998
Q ss_pred CcccccccCCHHHHHHHHhCCCce
Q 024296 243 QRIGHACCFEEEEWRKLKSSKIPV 266 (269)
Q Consensus 243 ~RIGHG~~~~~~l~~~l~~~~I~l 266 (269)
+=|=- -.+++++++..++.+|++
T Consensus 89 ~Fivs-P~~~~~vi~~a~~~~i~~ 111 (212)
T PRK05718 89 QFIVS-PGLTPPLLKAAQEGPIPL 111 (212)
T ss_pred CEEEC-CCCCHHHHHHHHHcCCCE
Confidence 75431 235789999999998875
No 203
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=52.52 E-value=81 Score=28.55 Aligned_cols=97 Identities=8% Similarity=0.010 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHH-HHHHcCCceeeecCCCCChhHHHHHHhcCCCcccc-c
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH-A 248 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGH-G 248 (269)
+.+.+...++.|.+.+.+.+..+.-..... .+...+.++.+ .|++.++|+.+|.--..+.+.+..|++.|-+=|=- |
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~-~g~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai~~GftSVM~Dg 105 (284)
T PRK12857 27 NMEIVQAIVAAAEAEKSPVIIQASQGAIKY-AGIEYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRNGFTSVMIDG 105 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechhHhhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEEeC
Confidence 578889999999988887777764322221 22344666444 66677999999998877888999999864221100 1
Q ss_pred ccCC--------HHHHHHHHhCCCceee
Q 024296 249 CCFE--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 249 ~~~~--------~~l~~~l~~~~I~lEi 268 (269)
-.++ .+++++....++.+|.
T Consensus 106 S~lp~eeNi~~T~~vv~~Ah~~gvsVEa 133 (284)
T PRK12857 106 SKLPLEENIALTKKVVEIAHAVGVSVEA 133 (284)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 1111 1478888889999884
No 204
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=52.48 E-value=82 Score=28.60 Aligned_cols=98 Identities=10% Similarity=0.108 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHH-HHHHc--CCceeeecCCCCChhHHHHHHhcCCCccc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQ--GLQITLHCGEIPNKEEIQSMLDFLPQRIG 246 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~-~ar~~--gl~~t~HAGE~~~~e~i~~ai~l~a~RIG 246 (269)
.+.+.+...++.|.+.+.+.+..+.-......+....+.++.+ .|++. ++|+.+|.--. +.+.+.+|++.|.+=|-
T Consensus 26 ~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm 104 (293)
T PRK07315 26 NNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIM 104 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEE
Confidence 3588899999999998888777664322222122344555444 45556 77999999776 67888999987643221
Q ss_pred c-cccCC--------HHHHHHHHhCCCceee
Q 024296 247 H-ACCFE--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 247 H-G~~~~--------~~l~~~l~~~~I~lEi 268 (269)
= |-.++ .++.++....++++|.
T Consensus 105 ~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ 135 (293)
T PRK07315 105 FDGSHLPVEENLKLAKEVVEKAHAKGISVEA 135 (293)
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 0 00111 1367778888998874
No 205
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=52.38 E-value=1.2e+02 Score=29.20 Aligned_cols=91 Identities=13% Similarity=0.067 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccc
Q 024296 168 RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH 247 (269)
Q Consensus 168 R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGH 247 (269)
|..+++.+.+-++...+... ++--|-+.++-.........++++..++.|+...+.+.-..+++-+..+-+.|..+|.-
T Consensus 225 r~rs~e~V~~Ei~~~~~~~~-~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~v~i 303 (472)
T TIGR03471 225 RTRSAESVIEEVKYALENFP-EVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWSCNARANVDYETLKVMKENGLRLLLV 303 (472)
T ss_pred EeCCHHHHHHHHHHHHHhcC-CCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 55678877777665554321 22222233322223345566777777777877665543233455444444589999999
Q ss_pred cccC-CHHHHHHH
Q 024296 248 ACCF-EEEEWRKL 259 (269)
Q Consensus 248 G~~~-~~~l~~~l 259 (269)
|+.. ++++++.+
T Consensus 304 GiES~s~~~L~~~ 316 (472)
T TIGR03471 304 GYESGDQQILKNI 316 (472)
T ss_pred cCCCCCHHHHHHh
Confidence 9864 56555544
No 206
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=52.34 E-value=2.1e+02 Score=26.93 Aligned_cols=99 Identities=11% Similarity=0.141 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCC--h-------------hhHHHHHH-HHHHcCCceeeecCCCCCh--
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGE--W-------------TTFLPALK-FAREQGLQITLHCGEIPNK-- 231 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~--~-------------~~f~~~f~-~ar~~gl~~t~HAGE~~~~-- 231 (269)
.+.+.+..+++.|.+.+++.+..+.-........ . ..+..+.+ .|++.++|+.+|---..+.
T Consensus 35 ~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPValHLDHg~~~~~ 114 (357)
T TIGR01520 35 TSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVVLHTDHCAKKLL 114 (357)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcch
Confidence 3588899999999998888777663322111111 1 11555555 4456699999998776666
Q ss_pred hHHHHHHhcC-CCccccc---ccC---C----H---------HHHHHHHhCCCceee
Q 024296 232 EEIQSMLDFL-PQRIGHA---CCF---E----E---------EEWRKLKSSKIPVRI 268 (269)
Q Consensus 232 e~i~~ai~l~-a~RIGHG---~~~---~----~---------~l~~~l~~~~I~lEi 268 (269)
+.|..|++.| +.=+.+| +.. | | +++++....||.+|-
T Consensus 115 ~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEa 171 (357)
T TIGR01520 115 PWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEI 171 (357)
T ss_pred HHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 5588898876 2234454 431 1 1 368888888999883
No 207
>PRK08185 hypothetical protein; Provisional
Probab=51.80 E-value=88 Score=28.33 Aligned_cols=97 Identities=9% Similarity=-0.001 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHH-HHHHcCCceeeecCCCCChhHHHHHHhcCCCcccc-
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH- 247 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGH- 247 (269)
.+.+.+..+++.|.+.+.+.+..+.-.... ..+..+.++.+ .|++..+|+.+|.--..+.+.+..|++.|.+=|==
T Consensus 21 ~n~e~~~avi~AAee~~sPvIl~~~~~~~~--~~~~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D 98 (283)
T PRK08185 21 ADSCFLRAVVEEAEANNAPAIIAIHPNELD--FLGDNFFAYVRERAKRSPVPFVIHLDHGATIEDVMRAIRCGFTSVMID 98 (283)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCcchhh--hccHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEe
Confidence 358889999999999888877776443322 11233666554 56667999999998877889999999876321100
Q ss_pred cccCC--------HHHHHHHHhCCCceee
Q 024296 248 ACCFE--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 248 G~~~~--------~~l~~~l~~~~I~lEi 268 (269)
|-.++ -+++++....+|++|.
T Consensus 99 ~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ 127 (283)
T PRK08185 99 GSLLPYEENVALTKEVVELAHKVGVSVEG 127 (283)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 11121 1367777888999874
No 208
>PLN02428 lipoic acid synthase
Probab=51.50 E-value=1.5e+02 Score=27.68 Aligned_cols=87 Identities=9% Similarity=0.062 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhhCCCc--eEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeec--CCCC-ChhHHHHHHhcCCCcccc
Q 024296 173 EAAMETVKLALEMRDLG--VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC--GEIP-NKEEIQSMLDFLPQRIGH 247 (269)
Q Consensus 173 ~~~~~~~~~a~~~~~~~--vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HA--GE~~-~~e~i~~ai~l~a~RIGH 247 (269)
++..+.++.+.++.-+. +++.|..-.+ +.....|.++++..++.+-.+.+++ .... +.+.+....+.|++++.|
T Consensus 133 ~Ep~~vA~~v~~~Glk~vvltSg~rddl~-D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~h 211 (349)
T PLN02428 133 DEPENVAEAIASWGVDYVVLTSVDRDDLP-DGGSGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLDVFAH 211 (349)
T ss_pred hhHHHHHHHHHHcCCCEEEEEEcCCCCCC-cccHHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEcc
Confidence 33344444444432222 4444322222 2446789999999988643333443 2222 344444555689999999
Q ss_pred cccCCHHHHHHHH
Q 024296 248 ACCFEEEEWRKLK 260 (269)
Q Consensus 248 G~~~~~~l~~~l~ 260 (269)
+....+.+.+.+.
T Consensus 212 nlETv~rL~~~Ir 224 (349)
T PLN02428 212 NIETVERLQRIVR 224 (349)
T ss_pred CccCcHHHHHHhc
Confidence 9766555555554
No 209
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=51.27 E-value=1.6e+02 Score=25.22 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=66.2
Q ss_pred EEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCChhHHHHHHhcC
Q 024296 163 LLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFL 241 (269)
Q Consensus 163 i~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~-~gl~~t~HAGE~~~~e~i~~ai~l~ 241 (269)
++-+.|..+++.+.+.++.+.+. |+-.+-+.- .. ..-.+.++.+++ .+-++++=||=..+++.+..|+..|
T Consensus 12 ~~~v~r~~~~~~~~~~~~a~~~g---Gi~~iEvt~--~~---~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aG 83 (206)
T PRK09140 12 LIAILRGITPDEALAHVGALIEA---GFRAIEIPL--NS---PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAG 83 (206)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHC---CCCEEEEeC--CC---ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcC
Confidence 55668999999998888877753 455554441 11 112234554443 4656889999888999999999999
Q ss_pred CCcccccccCCHHHHHHHHhCCCce
Q 024296 242 PQRIGHACCFEEEEWRKLKSSKIPV 266 (269)
Q Consensus 242 a~RIGHG~~~~~~l~~~l~~~~I~l 266 (269)
++= .|--..++++.+...+.++++
T Consensus 84 A~f-ivsp~~~~~v~~~~~~~~~~~ 107 (206)
T PRK09140 84 GRL-IVTPNTDPEVIRRAVALGMVV 107 (206)
T ss_pred CCE-EECCCCCHHHHHHHHHCCCcE
Confidence 843 455556888998888888764
No 210
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=51.26 E-value=85 Score=28.47 Aligned_cols=98 Identities=9% Similarity=0.062 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHH-HHHHc--CCceeeecCCCCChhHHHHHHhcCCCcccc
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQ--GLQITLHCGEIPNKEEIQSMLDFLPQRIGH 247 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~-~ar~~--gl~~t~HAGE~~~~e~i~~ai~l~a~RIGH 247 (269)
+.+.+..+++.|.+.+.+.+.-+.-.....-.++..+.++.. .|++. ++|+.+|.--..+.+.+..|++.|-+=|=-
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMi 106 (288)
T TIGR00167 27 NLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGFSSVMI 106 (288)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCCCEEEe
Confidence 488889999999988887776653332221023456776655 55667 899999998877889999998865321100
Q ss_pred -cccCC--------HHHHHHHHhCCCceee
Q 024296 248 -ACCFE--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 248 -G~~~~--------~~l~~~l~~~~I~lEi 268 (269)
|-.++ -+++++....+|.+|-
T Consensus 107 DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEa 136 (288)
T TIGR00167 107 DGSHEPFEENIELTKKVVERAHKMGVSVEA 136 (288)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 11121 1478888889999984
No 211
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=51.16 E-value=93 Score=28.36 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCCh--------hHHHHHHh----c-CCCcccccccC-CHHHHHHHHhC--CCceee
Q 024296 205 TTFLPALKFAREQGLQITLHCGEIPNK--------EEIQSMLD----F-LPQRIGHACCF-EEEEWRKLKSS--KIPVRI 268 (269)
Q Consensus 205 ~~f~~~f~~ar~~gl~~t~HAGE~~~~--------e~i~~ai~----l-~a~RIGHG~~~-~~~l~~~l~~~--~I~lEi 268 (269)
..+.++|+.+++.|+++.+|++...-+ +.+..++. + ++ | -|-.++ .++.++.+++. +|..|+
T Consensus 113 ~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~~lA~~~p~~-~-v~i~Hvst~~~~~~i~~ak~~vt~Et 190 (335)
T cd01294 113 EKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQRFPKL-K-IVLEHITTADAVEYVKSCNENVAATI 190 (335)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHHHHHHHcCCC-e-EEEecccHHHHHHHHHhCCCCcEEEE
Confidence 568899999999999999999874321 11222222 2 21 2 233343 35666666543 599998
Q ss_pred C
Q 024296 269 S 269 (269)
Q Consensus 269 c 269 (269)
|
T Consensus 191 ~ 191 (335)
T cd01294 191 T 191 (335)
T ss_pred c
Confidence 8
No 212
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=51.07 E-value=1.6e+02 Score=25.17 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCeEEEEecC
Q 024296 78 TQEVVEDFASENIVYLELRTT 98 (269)
Q Consensus 78 ~~~~~~~~~~dnV~Y~Elr~~ 98 (269)
+.++++.+++-|+..+|+.++
T Consensus 22 a~~~~~al~~gGi~~iEiT~~ 42 (196)
T PF01081_consen 22 AVPIAEALIEGGIRAIEITLR 42 (196)
T ss_dssp HHHHHHHHHHTT--EEEEETT
T ss_pred HHHHHHHHHHCCCCEEEEecC
Confidence 467788889999999999876
No 213
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=51.03 E-value=1.6e+02 Score=25.25 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCeEEEEecC
Q 024296 77 ITQEVVEDFASENIVYLELRTT 98 (269)
Q Consensus 77 ~~~~~~~~~~~dnV~Y~Elr~~ 98 (269)
-+.++++.+.+-|+.-+|+.++
T Consensus 17 ~a~~ia~al~~gGi~~iEit~~ 38 (201)
T PRK06015 17 HAVPLARALAAGGLPAIEITLR 38 (201)
T ss_pred HHHHHHHHHHHCCCCEEEEeCC
Confidence 3567888899999999999876
No 214
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=50.93 E-value=34 Score=26.23 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=29.2
Q ss_pred CChhHHHHHHhcCCCc--cccccc---CCHHHHHHHHhCCCceee
Q 024296 229 PNKEEIQSMLDFLPQR--IGHACC---FEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 229 ~~~e~i~~ai~l~a~R--IGHG~~---~~~~l~~~l~~~~I~lEi 268 (269)
-+++++...+...++= ||.|-. .+|++++.++++||.+|+
T Consensus 40 l~~e~l~~l~~~~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~ 84 (109)
T cd05560 40 LTAAHFEALLALQPEVILLGTGERQRFPPPALLAPLLARGIGVEV 84 (109)
T ss_pred CCHHHHHHHHhcCCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEE
Confidence 3566777666666552 277754 378999999999999996
No 215
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=50.77 E-value=2.1e+02 Score=27.39 Aligned_cols=89 Identities=12% Similarity=0.212 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEE---EEecCCCCcccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 024296 69 TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (269)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~dnV~Y~---Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (269)
-+++.+.+++++ ++.-||-++ |...+|.. .++++-+.++.++++++.+
T Consensus 156 lsp~~~a~~~y~----~~~GGvD~IKDDE~l~~q~~-----~p~~eRv~~~~~a~~~a~~-------------------- 206 (406)
T cd08207 156 LTPEETAALVRQ----LAAAGIDFIKDDELLANPPY-----SPLDERVRAVMRVINDHAQ-------------------- 206 (406)
T ss_pred CCHHHHHHHHHH----HHhCCCCcccccccCCCCCC-----CcHHHHHHHHHHHHHHHHH--------------------
Confidence 345666555555 555666555 66666554 3678889999999998765
Q ss_pred ccccccCCCCCCceEEEEEEEeCCCCHHHHHHHHHHHHhhCCC-ceEEEecCC
Q 024296 146 MNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDL-GVVGIDLSG 197 (269)
Q Consensus 146 ~~~~~~~~~~~~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~-~vvGidl~G 197 (269)
++|- +-++.+|=+-++++..+..+.+.+...+ .++.+..+|
T Consensus 207 ---------eTG~--~~~y~~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~G 248 (406)
T cd08207 207 ---------RTGR--KVMYAFNITDDIDEMRRNHDLVVEAGGTCVMVSLNSVG 248 (406)
T ss_pred ---------hhCC--cceEEEecCCCHHHHHHHHHHHHHhCCCeEEEeccccc
Confidence 2232 2355666666788888888888775432 234444444
No 216
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=50.68 E-value=1.9e+02 Score=26.05 Aligned_cols=98 Identities=16% Similarity=0.032 Sum_probs=53.6
Q ss_pred eEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCC-ChhHHHH
Q 024296 159 YVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIP-NKEEIQS 236 (269)
Q Consensus 159 ~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~-~~e~i~~ 236 (269)
.+++-+.++...+.+.+.+.++...++. +.-| |...++.++. .+++.++. ++|+. +||.. +++.++.
T Consensus 177 ~~~l~vD~n~~~~~~~A~~~~~~l~~~~---l~~i-----EeP~~~~d~~-~~~~L~~~~~ipIa--~~E~~~~~~~~~~ 245 (316)
T cd03319 177 DARLRVDANQGWTPEEAVELLRELAELG---VELI-----EQPVPAGDDD-GLAYLRDKSPLPIM--ADESCFSAADAAR 245 (316)
T ss_pred CCeEEEeCCCCcCHHHHHHHHHHHHhcC---CCEE-----ECCCCCCCHH-HHHHHHhcCCCCEE--EeCCCCCHHHHHH
Confidence 4567777888888888777777665442 2111 5554444433 34444443 67754 47754 5666766
Q ss_pred HHhcC-CCcccc------cccCCHHHHHHHHhCCCcee
Q 024296 237 MLDFL-PQRIGH------ACCFEEEEWRKLKSSKIPVR 267 (269)
Q Consensus 237 ai~l~-a~RIGH------G~~~~~~l~~~l~~~~I~lE 267 (269)
+++.+ ++-+.- |+.-.-.+.++..+.+|.+-
T Consensus 246 ~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~ 283 (316)
T cd03319 246 LAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVM 283 (316)
T ss_pred HHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEE
Confidence 66632 222211 22212346677777777653
No 217
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=50.68 E-value=86 Score=28.39 Aligned_cols=79 Identities=20% Similarity=0.118 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCChhHHHHHHhcCCCcccccc
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 249 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~ 249 (269)
+|+++.+.++.. .-+..=|+|+-+-.-.+..|..=.+.++..++. ++|+++|.|=..+.+.++.|+..|..-|-=++
T Consensus 156 ~peea~~Fv~~T--gvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK09195 156 DPAQAREFVEAT--GIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVAT 233 (284)
T ss_pred CHHHHHHHHHHH--CcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 577777666532 112234555554222222333333345545444 99999999987788999999999998888887
Q ss_pred cC
Q 024296 250 CF 251 (269)
Q Consensus 250 ~~ 251 (269)
.+
T Consensus 234 ~l 235 (284)
T PRK09195 234 EL 235 (284)
T ss_pred HH
Confidence 54
No 218
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=50.04 E-value=94 Score=28.14 Aligned_cols=78 Identities=21% Similarity=0.159 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecC-CCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCChhHHHHHHhcCCCccccc
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLS-GNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 248 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~-G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG 248 (269)
+|+++.+.++.. .-+..=|+|+-+ |.- ++.|..=.+.++..++. ++|+++|.|=..+.+.++.++.+|..-|-=+
T Consensus 156 ~pe~a~~Fv~~T--gvD~LAvaiGt~HG~y-~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK12857 156 DPEEARRFVEET--GVDALAIAIGTAHGPY-KGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKVNID 232 (284)
T ss_pred CHHHHHHHHHHH--CCCEEeeccCcccccc-CCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 577776665432 112224455544 332 22333333444544444 8999999998778899999999999888888
Q ss_pred ccC
Q 024296 249 CCF 251 (269)
Q Consensus 249 ~~~ 251 (269)
+.+
T Consensus 233 T~~ 235 (284)
T PRK12857 233 TNI 235 (284)
T ss_pred cHH
Confidence 764
No 219
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=49.28 E-value=1.6e+02 Score=25.82 Aligned_cols=74 Identities=11% Similarity=-0.081 Sum_probs=51.2
Q ss_pred hhCCCceEEEecCCCCCCCChhhHHHHHHHHH-HcCCceeeecCCCCChhHHHHHHhcCCCcccccccC--CHHHHHHHH
Q 024296 184 EMRDLGVVGIDLSGNPTKGEWTTFLPALKFAR-EQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLK 260 (269)
Q Consensus 184 ~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar-~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~~~l~~~l~ 260 (269)
+...+.+.=+||.|.+... . ..++++... ..++++.+=.|= .+.+.+...+.+|++|+-=|..+ +|++++.+.
T Consensus 42 ~~g~~~lhivDLd~a~g~~--~-n~~~i~~i~~~~~~~v~vgGGI-rs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~ 117 (243)
T TIGR01919 42 QGGAEWIHLVDLDAAFGGG--N-NEMMLEEVVKLLVVVEELSGGR-RDDSSLRAALTGGRARVNGGTAALENPWWAAAVI 117 (243)
T ss_pred hCCCeEEEEEECCCCCCCc--c-hHHHHHHHHHHCCCCEEEcCCC-CCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHH
Confidence 3345679999999988332 2 233454443 346788777665 46788888999999999878653 688777666
Q ss_pred h
Q 024296 261 S 261 (269)
Q Consensus 261 ~ 261 (269)
+
T Consensus 118 ~ 118 (243)
T TIGR01919 118 R 118 (243)
T ss_pred H
Confidence 5
No 220
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=48.94 E-value=1.7e+02 Score=24.93 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=48.2
Q ss_pred CCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCChhHHHHHHhcCCCcccccccC--CHHHHHHHHhC
Q 024296 187 DLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSS 262 (269)
Q Consensus 187 ~~~vvGidl~G~E~~~~~~~f~~~f~~ar~-~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~~~l~~~l~~~ 262 (269)
-+.+.=+|+.|...+. ....+..+..++ -++|+.+ .|=..+.+.+..++..|++++-=|..+ +|+.++.+.++
T Consensus 44 ~~~i~v~dld~~~~g~--~~~~~~i~~i~~~~~~pv~~-~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~ 119 (233)
T PRK00748 44 AKWLHLVDLDGAKAGK--PVNLELIEAIVKAVDIPVQV-GGGIRSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKK 119 (233)
T ss_pred CCEEEEEeCCccccCC--cccHHHHHHHHHHCCCCEEE-cCCcCCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHH
Confidence 3568888887754332 234555555544 4788888 555567888988888999999877654 56555555443
No 221
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=48.75 E-value=43 Score=30.38 Aligned_cols=59 Identities=24% Similarity=0.227 Sum_probs=38.6
Q ss_pred eEEEecC-CCCCCCCh-hhHHHHHHHHHH-cCCceeeecCCCCChhHHHHHHhcCCCcccccc
Q 024296 190 VVGIDLS-GNPTKGEW-TTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 249 (269)
Q Consensus 190 vvGidl~-G~E~~~~~-~~f~~~f~~ar~-~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~ 249 (269)
=++|+-+ |.-..+.| -+|. .++..++ .++|+++|.|=-.+.+.|+.+|.+|+--|-=.+
T Consensus 174 A~aiGn~HG~Yk~~~p~L~~~-~L~~i~~~~~~PlVlHGgSGip~~eI~~aI~~GV~KvNi~T 235 (286)
T COG0191 174 AAAIGNVHGVYKPGNPKLDFD-RLKEIQEAVSLPLVLHGGSGIPDEEIREAIKLGVAKVNIDT 235 (286)
T ss_pred eeeccccccCCCCCCCCCCHH-HHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHhCceEEeeCc
Confidence 4566655 33222344 3343 3444444 489999999987778999999999887765443
No 222
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.50 E-value=70 Score=26.57 Aligned_cols=92 Identities=26% Similarity=0.367 Sum_probs=53.8
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCCh---hhHHHHHHHHHHcCC---ceeeecCCCCCh---
Q 024296 161 RLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEW---TTFLPALKFAREQGL---QITLHCGEIPNK--- 231 (269)
Q Consensus 161 rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~---~~f~~~f~~ar~~gl---~~t~HAGE~~~~--- 231 (269)
-+++.+.-..+.+....++.-+..+.+..+|-+ |+|+-.+-.+ -.|.++-+.|+++-+ -...-.||....
T Consensus 86 lLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvvi-L~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl 164 (214)
T KOG0086|consen 86 LLVYDITSRDSFNALTNWLTDARTLASPNIVVI-LCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 164 (214)
T ss_pred EEEEeccchhhHHHHHHHHHHHHhhCCCcEEEE-EeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence 345555444556666667776666666655544 7887654333 348888888888755 222334543210
Q ss_pred ---hHHHHHHh---cCCCcccccccCCH
Q 024296 232 ---EEIQSMLD---FLPQRIGHACCFEE 253 (269)
Q Consensus 232 ---e~i~~ai~---l~a~RIGHG~~~~~ 253 (269)
..|..-|+ +.|+|+|-|++--+
T Consensus 165 ~c~~tIl~kIE~GElDPer~gsGIQYGd 192 (214)
T KOG0086|consen 165 KCARTILNKIESGELDPERMGSGIQYGD 192 (214)
T ss_pred HHHHHHHHHHhhcCCCHHHcccccccch
Confidence 12333344 46999999987533
No 223
>PRK05451 dihydroorotase; Provisional
Probab=48.11 E-value=72 Score=29.45 Aligned_cols=64 Identities=16% Similarity=0.269 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHcCCceeeecCCCCCh------hH--HHHHH-----hc-CCCcccccccC-CHHHHHHHHh-C-CCce
Q 024296 204 WTTFLPALKFAREQGLQITLHCGEIPNK------EE--IQSML-----DF-LPQRIGHACCF-EEEEWRKLKS-S-KIPV 266 (269)
Q Consensus 204 ~~~f~~~f~~ar~~gl~~t~HAGE~~~~------e~--i~~ai-----~l-~a~RIGHG~~~-~~~l~~~l~~-~-~I~l 266 (269)
...+.++|+.+++.|+++.+||+....+ +. +...+ .+ ++ || |-+++ .++.++.+++ + +|..
T Consensus 117 d~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~~~~e~~~~~~~l~~lA~~~pg~-~l-hI~Hlst~~~~e~i~~a~~~it~ 194 (345)
T PRK05451 117 IEKIYPVLEAMQKLGMPLLVHGEVTDPDIDIFDREAVFIDRVLEPLRRRFPKL-KI-VFEHITTKDAVDYVREANDNLAA 194 (345)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCcccccccchHHHHHHHHHHHHHhcCCC-cE-EEEecCcHHHHHHHHhcCCCEEE
Confidence 3568899999999999999999863210 11 21111 22 32 22 34443 4666666654 3 7888
Q ss_pred eeC
Q 024296 267 RIS 269 (269)
Q Consensus 267 Eic 269 (269)
|+|
T Consensus 195 Et~ 197 (345)
T PRK05451 195 TIT 197 (345)
T ss_pred Eec
Confidence 888
No 224
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=47.89 E-value=2.3e+02 Score=26.17 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=28.4
Q ss_pred CCceeeecCCCCChhHHHHHHhcCCCcccccccC--C-HHHHHHH
Q 024296 218 GLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--E-EEEWRKL 259 (269)
Q Consensus 218 gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~-~~l~~~l 259 (269)
++++ +-.|=..+++.+.+.+..||+-+.=|..+ + |.+.+.+
T Consensus 289 ~ipI-ig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i 332 (344)
T PRK05286 289 RLPI-IGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEI 332 (344)
T ss_pred CCCE-EEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHH
Confidence 4675 45677778899999988899988777543 2 6544333
No 225
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=47.79 E-value=21 Score=36.66 Aligned_cols=37 Identities=32% Similarity=0.518 Sum_probs=25.4
Q ss_pred HHHHHHhcCCeEEEEec-CCCCcccCCCCHHH--HHHHHH
Q 024296 81 VVEDFASENIVYLELRT-TPKRNESIGMSKRS--YMDAVV 117 (269)
Q Consensus 81 ~~~~~~~dnV~Y~Elr~-~p~~~~~~g~~~~~--~~~~v~ 117 (269)
-++++.+.||.|+|+|. +-..+...|++.++ .++.++
T Consensus 259 ~~~~l~~~Gi~YiE~R~lDlnPf~~~GI~~~~~~Fl~lfl 298 (737)
T TIGR01435 259 TVESLAKTGIEYLEIRSIDLNPFEPNGISKDELIFIHLFM 298 (737)
T ss_pred cHHHHHhcCCcEEEEeeccCCCCCcCCCCHHHHHHHHHHH
Confidence 45778899999999994 33334567888766 344443
No 226
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=47.63 E-value=96 Score=28.46 Aligned_cols=98 Identities=8% Similarity=-0.047 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHH-HHHHcC-CceeeecCCCCChhHHHHHHhcCCCcccc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQG-LQITLHCGEIPNKEEIQSMLDFLPQRIGH 247 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~-~ar~~g-l~~t~HAGE~~~~e~i~~ai~l~a~RIGH 247 (269)
.+.+.+..+++.|.+.+.+.+..+.-..... .+...+..+.+ .|++.. +|+.+|.--..+.+.+..|++.|-+=+=-
T Consensus 25 ~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~-~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~ 103 (307)
T PRK05835 25 VNFEMLNAIFEAGNEENSPLFIQASEGAIKY-MGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMI 103 (307)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCccHHhh-CChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 4588999999999998888777764332111 22344555555 445564 99999998877889999999976321100
Q ss_pred -cccCC--------HHHHHHHHhCCCceee
Q 024296 248 -ACCFE--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 248 -G~~~~--------~~l~~~l~~~~I~lEi 268 (269)
|-.++ -+++++....++.+|-
T Consensus 104 DgS~l~~eeNi~~T~~vve~Ah~~gv~VEa 133 (307)
T PRK05835 104 DASHHAFEENLELTSKVVKMAHNAGVSVEA 133 (307)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 11121 1478888899999883
No 227
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=47.44 E-value=2.1e+02 Score=25.52 Aligned_cols=91 Identities=14% Similarity=0.069 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecC-C---CCChhHH----HHHHhcCCCc
Q 024296 173 EAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG-E---IPNKEEI----QSMLDFLPQR 244 (269)
Q Consensus 173 ~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAG-E---~~~~e~i----~~ai~l~a~R 244 (269)
+.....++.+.+..-+ ++.+-..- .+.....+..+.||+.|+.+.+..+ + ..+++.+ ..+.+.|++|
T Consensus 91 ~~~~~di~~~~~~g~~-~iri~~~~----~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 165 (275)
T cd07937 91 DVVELFVEKAAKNGID-IFRIFDAL----NDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADS 165 (275)
T ss_pred HHHHHHHHHHHHcCCC-EEEEeecC----ChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 3345566666554322 23331111 1245677788888888877665431 1 1234443 3445578888
Q ss_pred cccccc---CCH----HHHHHHHhC-CCceee
Q 024296 245 IGHACC---FEE----EEWRKLKSS-KIPVRI 268 (269)
Q Consensus 245 IGHG~~---~~~----~l~~~l~~~-~I~lEi 268 (269)
|.-.=. +.| ++++.++++ +++|++
T Consensus 166 i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~ 197 (275)
T cd07937 166 ICIKDMAGLLTPYAAYELVKALKKEVGLPIHL 197 (275)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 865521 244 356666654 466654
No 228
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=47.35 E-value=1.7e+02 Score=25.50 Aligned_cols=72 Identities=13% Similarity=0.018 Sum_probs=51.3
Q ss_pred CceEEEecCCCCCCCChhhHHHHHHHH-HHcCCceeeecCCCCChhHHHHHHhcCCCcccccccC--CHHHHHHHHhC
Q 024296 188 LGVVGIDLSGNPTKGEWTTFLPALKFA-REQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSS 262 (269)
Q Consensus 188 ~~vvGidl~G~E~~~~~~~f~~~f~~a-r~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~~~l~~~l~~~ 262 (269)
+.+.=+||.|.+.+.+ ...++.+.. +.-++|+.+=.|= .+.+.+...+.+|++|+-=|... +|++++.+.++
T Consensus 47 ~~l~ivDLd~a~~~~~--~n~~~I~~i~~~~~~pi~vGGGI-rs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~ 121 (234)
T PRK13587 47 NRIHIVDLIGAKAQHA--REFDYIKSLRRLTTKDIEVGGGI-RTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHT 121 (234)
T ss_pred CEEEEEECcccccCCc--chHHHHHHHHhhcCCeEEEcCCc-CCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHH
Confidence 5699999998864432 234444433 4457888776665 46788889999999999777654 78888877765
No 229
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=47.10 E-value=2.1e+02 Score=26.48 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeec-CCCCChhHHHHHHhcCCCcccc
Q 024296 169 RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC-GEIPNKEEIQSMLDFLPQRIGH 247 (269)
Q Consensus 169 ~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HA-GE~~~~e~i~~ai~l~a~RIGH 247 (269)
..+.+...+.++.+.+. ++..|.+.|.|.--. .+|.++++.+++.|+.+++-. |=..+.+.+......|.++|.=
T Consensus 45 ~~~~e~~~~ii~~~~~~---g~~~v~~~GGEPll~-~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~i 120 (378)
T PRK05301 45 ELSTEEWIRVLREARAL---GALQLHFSGGEPLLR-KDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGLDHIQL 120 (378)
T ss_pred CCCHHHHHHHHHHHHHc---CCcEEEEECCccCCc-hhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCCCEEEE
Confidence 45667777777766543 577888888776433 458899999999898765432 2112334444444456666654
Q ss_pred cccC-CH-----------------HHHHHHHhCCCceee
Q 024296 248 ACCF-EE-----------------EEWRKLKSSKIPVRI 268 (269)
Q Consensus 248 G~~~-~~-----------------~l~~~l~~~~I~lEi 268 (269)
.+.. ++ +.++.+++.++.+.|
T Consensus 121 Sldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i 159 (378)
T PRK05301 121 SFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTL 159 (378)
T ss_pred EecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEE
Confidence 4432 22 245667777766554
No 230
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=45.49 E-value=2e+02 Score=26.73 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHH-HcCCceeeecCCCCChhHHHHHHhcCCCcccccc
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAR-EQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 249 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar-~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~ 249 (269)
+++++.+....|.+.....++ +.-+|...+..+.....+.+..+ ..|+.+.+-.|. .+.+...+.-+.|++|+-|-+
T Consensus 85 ~~eeIle~Ak~ak~~Ga~r~c-~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~-l~~eq~~~L~~aGvd~ynhNL 162 (335)
T COG0502 85 EVEEILEAAKKAKAAGATRFC-MGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGM-LTEEQAEKLADAGVDRYNHNL 162 (335)
T ss_pred CHHHHHHHHHHHHHcCCceEE-EEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCC-CCHHHHHHHHHcChhheeccc
Confidence 355555555555443311122 11234332345677888888888 569999999995 567777777778999999976
Q ss_pred cCCH----------------HHHHHHHhCCCc
Q 024296 250 CFEE----------------EEWRKLKSSKIP 265 (269)
Q Consensus 250 ~~~~----------------~l~~~l~~~~I~ 265 (269)
..++ +.++.+++.|+-
T Consensus 163 eTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~ 194 (335)
T COG0502 163 ETSPEFYENIITTRTYEDRLNTLENVREAGIE 194 (335)
T ss_pred ccCHHHHcccCCCCCHHHHHHHHHHHHHcCCc
Confidence 5432 267777777654
No 231
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=45.25 E-value=2.5e+02 Score=25.90 Aligned_cols=165 Identities=16% Similarity=0.117 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHH---HHHhcCCeEEEEec----------CCCCc---ccCCCCHHHHHHHHHHHHHhhhhcccccccc
Q 024296 70 DHATVTRITQEVVE---DFASENIVYLELRT----------TPKRN---ESIGMSKRSYMDAVVEGLRAVSAVDVDFASR 133 (269)
Q Consensus 70 ~~~~~~~~~~~~~~---~~~~dnV~Y~Elr~----------~p~~~---~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~ 133 (269)
+.+++.++..++.+ .+.+.|.-.+|+.. +|..+ ..-|=+.+.-++-+.+.++..++.
T Consensus 128 t~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~------- 200 (353)
T cd02930 128 SEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAA------- 200 (353)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHH-------
Confidence 34556666555554 44568999999976 56432 122335555454444444444320
Q ss_pred ccccccccccccccccccCCCCCCceEEEEEE--EeCCCCHHHHHHHHHHHHhhCCCceEEEecC-C-CCCCC-------
Q 024296 134 SIDVRRPVNTKNMNDACNGTRGKKIYVRLLLS--IDRRETTEAAMETVKLALEMRDLGVVGIDLS-G-NPTKG------- 202 (269)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~--~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~-G-~E~~~------- 202 (269)
--.++.+.+|+-.. .....+.+++.+.++...+. ++--++++ | .|...
T Consensus 201 ------------------vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~---G~d~i~vs~g~~e~~~~~~~~~~ 259 (353)
T cd02930 201 ------------------VGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAA---GADILNTGIGWHEARVPTIATSV 259 (353)
T ss_pred ------------------cCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHc---CCCEEEeCCCcCCCCCccccccC
Confidence 11344566665432 11234666666666555443 23223332 1 22111
Q ss_pred ChhhHHHHHHHHHHc-CCceeeecCCCCChhHHHHHHhcC-CCcccccc--cCCHHHHHHHHhCC
Q 024296 203 EWTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFL-PQRIGHAC--CFEEEEWRKLKSSK 263 (269)
Q Consensus 203 ~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l~-a~RIGHG~--~~~~~l~~~l~~~~ 263 (269)
+...+....+..|+. ++|+.. .|...+++...++++-| +|=++=|- -.+|++.+.+++.+
T Consensus 260 ~~~~~~~~~~~ik~~v~iPVi~-~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~~g~ 323 (353)
T cd02930 260 PRGAFAWATAKLKRAVDIPVIA-SNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAAAGR 323 (353)
T ss_pred CchhhHHHHHHHHHhCCCCEEE-cCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHHhCC
Confidence 112245555556554 677544 45556788888888854 66555553 34899988888765
No 232
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=45.22 E-value=2.3e+02 Score=27.72 Aligned_cols=109 Identities=15% Similarity=0.075 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEE---EEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccc
Q 024296 70 DHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM 146 (269)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~dnV~Y~---Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (269)
+++.+.+++++ ++.-||-++ |.-.++.. .++++-+.++.++++++.+
T Consensus 181 sp~~~A~~~y~----~~~GGvD~IKDDE~l~dq~~-----~p~~eRv~~~~~a~~~a~~--------------------- 230 (475)
T CHL00040 181 SAKNYGRAVYE----CLRGGLDFTKDDENVNSQPF-----MRWRDRFLFCAEAIYKAQA--------------------- 230 (475)
T ss_pred CHHHHHHHHHH----HHcCCCcccccCccCCCCCC-----CCHHHHHHHHHHHHHHHHH---------------------
Confidence 45566555554 556676665 56555544 3778899999999998754
Q ss_pred cccccCCCCCCceEEEEEEEeCC-CCHHHHHHHHHHHHhhCCC-ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeee
Q 024296 147 NDACNGTRGKKIYVRLLLSIDRR-ETTEAAMETVKLALEMRDL-GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (269)
Q Consensus 147 ~~~~~~~~~~~i~~rli~~~~R~-~~~~~~~~~~~~a~~~~~~-~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~H 224 (269)
++|- +-++.+|=+ -++++..+..+.+.+.... .++.+.++|-.. +..+=+.|++.++++-+|
T Consensus 231 --------eTG~--~~~y~~NiTa~~~~em~~ra~~a~e~G~~~~mv~~~~~G~~a------l~~l~~~~~~~~l~IhaH 294 (475)
T CHL00040 231 --------ETGE--IKGHYLNATAGTCEEMYKRAVFARELGVPIVMHDYLTGGFTA------NTSLAHYCRDNGLLLHIH 294 (475)
T ss_pred --------hhCC--cceeeeccCCCCHHHHHHHHHHHHHcCCceEEEeccccccch------HHHHHHHhhhcCceEEec
Confidence 2232 234455655 4688888888888876433 244444455332 222333345678888777
No 233
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=45.16 E-value=2.4e+02 Score=25.70 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=59.5
Q ss_pred ceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHH-
Q 024296 158 IYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQS- 236 (269)
Q Consensus 158 i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~- 236 (269)
.-+-+...-+...+.+...+.-+.|... ++|||+.++-.+++-| .+-.+.+....+. .-+.+--| -++..+
T Consensus 85 yiaYFQ~~TNTyApvevLre~ye~aL~~--~~VVGLsIgTRPDClp-d~VldlL~e~~~r-~~vWvELG----LQT~h~~ 156 (312)
T COG1242 85 YIAYFQAYTNTYAPVEVLREMYEQALSE--AGVVGLSIGTRPDCLP-DDVLDLLAEYNKR-YEVWVELG----LQTAHDK 156 (312)
T ss_pred EEEEEeccccccCcHHHHHHHHHHHhCc--CCeeEEeecCCCCCCc-HHHHHHHHHHhhh-eEEEEEec----cchhhHH
Confidence 4455566666677888888888877754 5699999998888764 4455555554444 44444333 233322
Q ss_pred HHhcCCCcccccccCCHHHHHHHHhCCCce
Q 024296 237 MLDFLPQRIGHACCFEEEEWRKLKSSKIPV 266 (269)
Q Consensus 237 ai~l~a~RIGHG~~~~~~l~~~l~~~~I~l 266 (269)
.+. ...| ||++..-.+.++.++++||-+
T Consensus 157 Tlk-~iNR-gHd~~~y~dav~r~rkrgIkv 184 (312)
T COG1242 157 TLK-RINR-GHDFACYVDAVKRLRKRGIKV 184 (312)
T ss_pred HHH-HHhc-ccchHHHHHHHHHHHHcCCeE
Confidence 221 1113 677666566677777777643
No 234
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=44.95 E-value=17 Score=29.20 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=19.8
Q ss_pred chhccc-----cCCCCCHHHHHHHHHHhccCCCc
Q 024296 10 VELHAH-----LNGSIRDSTLLELARVLGEKGVI 38 (269)
Q Consensus 10 ~eLH~H-----L~Gs~~~~tl~~la~~~~~~g~~ 38 (269)
+|||+| ++|..+++.+.+.|++ .|+.
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~v~~A~~---~Gl~ 31 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEYVEQAKE---KGLD 31 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHHHHHHHH---TTES
T ss_pred CCccccccCcchhhcCCHHHHHHHHHH---cCCC
Confidence 689999 4677899999999985 5654
No 235
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=44.88 E-value=2.2e+02 Score=27.88 Aligned_cols=197 Identities=15% Similarity=0.175 Sum_probs=109.0
Q ss_pred cCCCCCHHHHHHHHHHhccCCCccchhhHHHHhhcCCCHH--HHHHH---hH-HHHHhhCCHHHHHHHHHHHHHHHHhcC
Q 024296 16 LNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLH--EVFKL---FD-LIHVLTTDHATVTRITQEVVEDFASEN 89 (269)
Q Consensus 16 L~Gs~~~~tl~~la~~~~~~g~~~~~~~~~~~~~~~~~l~--~f~~~---f~-~~~~l~~~~~~~~~~~~~~~~~~~~dn 89 (269)
.++.+.++--++++++..+.|++... +.. ......+++ +|.-. +. .++.+.+..+...+.+.+.+..+..--
T Consensus 72 ~ga~~~~~qK~eiar~L~~~gvd~IE-v~f-P~aSe~~~~~~~~i~k~~g~~~~I~~l~rc~~~di~~tvEAl~~aKr~~ 149 (560)
T KOG2367|consen 72 PGAFLTTEQKLEIARQLAKLGVDIIE-VGF-PVASEQDFEDCKTIAKTLGYVPVICTLIRCHMDDIERTVEALKYAKRPR 149 (560)
T ss_pred CCCcCCcHHHHHHHHHHHhcCcCEEE-ecC-cccCcchHHHHHHHHHhCCCCceEEEeeccchHHHHHHHHHhhccCcce
Confidence 45677888888888876555554311 000 000011121 22211 11 345667777666677777777665554
Q ss_pred CeEEEEecCCCCcc-cCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCceEEEE-EEEe
Q 024296 90 IVYLELRTTPKRNE-SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLL-LSID 167 (269)
Q Consensus 90 V~Y~Elr~~p~~~~-~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli-~~~~ 167 (269)
|. +=+-+++-... .-+.+.+++++..+++++=++.. ..++ +++= =+..
T Consensus 150 Vh-~~~aTSd~~rey~~~kskeevi~~Ave~ikfvksl---------------------------g~~~--ieFSpEd~~ 199 (560)
T KOG2367|consen 150 VH-VFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSL---------------------------GKWD--IEFSPEDFG 199 (560)
T ss_pred EE-EEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhc---------------------------ccce--EEECccccc
Confidence 42 22233332211 33578999999999998765431 1122 2221 1223
Q ss_pred CCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-----CCceeeecCCCCCh--hHHHHHHhc
Q 024296 168 RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDF 240 (269)
Q Consensus 168 R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-----gl~~t~HAGE~~~~--e~i~~ai~l 240 (269)
|+ +.+.+.++.....+.. +.-|+|...=....|.+|.++.+..+.+ .+-+..|+--..|- .+..-.++.
T Consensus 200 rs-e~~fl~eI~~aV~Kag---~~tvnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g~~A 275 (560)
T KOG2367|consen 200 RS-ELEFLLEILGAVIKAG---VTTVNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELGLLA 275 (560)
T ss_pred cC-cHHHHHHHHHHHHHhC---CccccCcceecccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHHhhc
Confidence 32 3566667777666643 3335554433345678899999988874 57788888655542 334455567
Q ss_pred CCCccccc
Q 024296 241 LPQRIGHA 248 (269)
Q Consensus 241 ~a~RIGHG 248 (269)
||+||.--
T Consensus 276 GA~~VE~~ 283 (560)
T KOG2367|consen 276 GARQVEVT 283 (560)
T ss_pred CcceEEEE
Confidence 99998643
No 236
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=44.84 E-value=1.5e+02 Score=26.29 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=31.1
Q ss_pred eEEEecCCCCCC--------CChhhHHHHHHHHHHcCCceeeec
Q 024296 190 VVGIDLSGNPTK--------GEWTTFLPALKFAREQGLQITLHC 225 (269)
Q Consensus 190 vvGidl~G~E~~--------~~~~~f~~~f~~ar~~gl~~t~HA 225 (269)
+|-+|++|+++- ...++|...|...++.|+++..|.
T Consensus 113 vvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHi 156 (275)
T COG1856 113 VVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHI 156 (275)
T ss_pred EEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeE
Confidence 999999999873 235789999999999999999995
No 237
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=44.72 E-value=1e+02 Score=28.01 Aligned_cols=96 Identities=11% Similarity=0.038 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHH-HHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccc
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 249 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~-~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~ 249 (269)
+.++..+.++.|.+.+++.++.+.-.+....+-...+.. +-..|.+.++|+.+|---..+.+.+..+++.|-+ .|-+
T Consensus 27 nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~GFs--SvMi 104 (286)
T COG0191 27 NLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRAGFS--SVMI 104 (286)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHhcCCc--eEEe
Confidence 478889999999999888888885544333322233333 3345667799999998776678889999885422 2222
Q ss_pred cC-----------CHHHHHHHHhCCCceee
Q 024296 250 CF-----------EEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 250 ~~-----------~~~l~~~l~~~~I~lEi 268 (269)
.. ..+++++....++.+|.
T Consensus 105 DgS~~~~eENi~~tkevv~~ah~~gvsVEa 134 (286)
T COG0191 105 DGSHLPFEENIAITKEVVEFAHAYGVSVEA 134 (286)
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 21 12578999999999985
No 238
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=44.72 E-value=1.2e+02 Score=27.46 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=54.3
Q ss_pred CceEEEEEEEeCC--CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc--C-CceeeecCCCCCh
Q 024296 157 KIYVRLLLSIDRR--ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ--G-LQITLHCGEIPNK 231 (269)
Q Consensus 157 ~i~~rli~~~~R~--~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~--g-l~~t~HAGE~~~~ 231 (269)
|+-.-++-.+..+ .+.+...+.++...+..-++++-.+..|.=.--+.++...+++.+.+. | +|+.+++|..+..
T Consensus 7 Gvi~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~ 86 (299)
T COG0329 7 GVIPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTA 86 (299)
T ss_pred cceeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHH
Confidence 4444555555442 345566666666665543445555555533334668899999988885 4 8999999998766
Q ss_pred hHHH---HHHhcCCCc
Q 024296 232 EEIQ---SMLDFLPQR 244 (269)
Q Consensus 232 e~i~---~ai~l~a~R 244 (269)
+.+. .|-++|++-
T Consensus 87 eai~lak~a~~~Gad~ 102 (299)
T COG0329 87 EAIELAKHAEKLGADG 102 (299)
T ss_pred HHHHHHHHHHhcCCCE
Confidence 6553 333456553
No 239
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=44.55 E-value=2.4e+02 Score=25.72 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCC-cccccccC-CHHHHHHHHhCC--CceeeC
Q 024296 204 WTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQ-RIGHACCF-EEEEWRKLKSSK--IPVRIS 269 (269)
Q Consensus 204 ~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~-RIGHG~~~-~~~l~~~l~~~~--I~lEic 269 (269)
.....++|..+++.|+++.+|+. ..+.-|...|+. -|.|-... .-++++..++++ |..|+|
T Consensus 114 ~~~l~~~~~~~~~~g~~v~~H~E-----r~~~la~~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ 178 (337)
T cd01302 114 DGTLMRTFLEIASRGGPVMVHAE-----RAAQLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVC 178 (337)
T ss_pred HHHHHHHHHHHHhcCCeEEEeHH-----HHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcC
Confidence 35688899999999999999997 222222234543 34454322 125677777776 455665
No 240
>PRK09875 putative hydrolase; Provisional
Probab=44.36 E-value=1.1e+02 Score=27.67 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=33.4
Q ss_pred HHHHcCCceeeecCCCC-ChhHHHHHHhcCC--Ccc--ccccc-CCHHHHHHHHhCCCceeeC
Q 024296 213 FAREQGLQITLHCGEIP-NKEEIQSMLDFLP--QRI--GHACC-FEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 213 ~ar~~gl~~t~HAGE~~-~~e~i~~ai~l~a--~RI--GHG~~-~~~~l~~~l~~~~I~lEic 269 (269)
.+++-|.|++.|.+-.. +.+-+.-+.+.|+ +|+ ||--. .+++.+..++++|.-+|.|
T Consensus 147 a~~~TG~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD 209 (292)
T PRK09875 147 AHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFD 209 (292)
T ss_pred HHHHHCCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEec
Confidence 33445888888865432 3343332333554 664 66533 3667777888888777753
No 241
>cd01658 Ribosomal_L30 Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.
Probab=44.22 E-value=60 Score=21.58 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=31.5
Q ss_pred ceeeecCCCCChhHHHHHHh-cCCCcccccccC--CHHHHHHHHh
Q 024296 220 QITLHCGEIPNKEEIQSMLD-FLPQRIGHACCF--EEEEWRKLKS 261 (269)
Q Consensus 220 ~~t~HAGE~~~~e~i~~ai~-l~a~RIGHG~~~--~~~l~~~l~~ 261 (269)
++|.--|-.+.++..++++. ||-.|++|.+.. +|.+.-++..
T Consensus 2 ~i~~iRs~ig~~~~~r~tl~~LgL~k~~~~v~~~~tp~~~Gml~k 46 (54)
T cd01658 2 KITLVKSLIGRPKKQRATLKALGLKKINQTVVHKDTPSIRGMINK 46 (54)
T ss_pred EEEEEeCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHH
Confidence 45666666677788888887 899999999865 5776666554
No 242
>COG2918 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=44.03 E-value=30 Score=33.40 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCeEEEEec-CCCCcccCCCCHHHH
Q 024296 80 EVVEDFASENIVYLELRT-TPKRNESIGMSKRSY 112 (269)
Q Consensus 80 ~~~~~~~~dnV~Y~Elr~-~p~~~~~~g~~~~~~ 112 (269)
.-++.+++-||.|+|+|. +.......|++.+++
T Consensus 314 ~~~~aL~~~GiEYiEvRslDiNPF~piGIs~~q~ 347 (518)
T COG2918 314 SPSDALLRRGIEYIEVRSLDINPFSPIGISEDQA 347 (518)
T ss_pred ChHHHHHhcCceEEEEEeeccCCCCcCCCCHHHH
Confidence 356788999999999994 333345678888775
No 243
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=43.62 E-value=2e+02 Score=24.30 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=36.3
Q ss_pred HHHHHHHHHc-CCceeeecCCCCChhHHHHHHhc-CCCccccccc--CCHHHHHHHHhC
Q 024296 208 LPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDF-LPQRIGHACC--FEEEEWRKLKSS 262 (269)
Q Consensus 208 ~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l-~a~RIGHG~~--~~~~l~~~l~~~ 262 (269)
.+.++..++. ++++.+ .|-..+++.+.+++.. |++-+.=|-. .+|++.+.+++.
T Consensus 172 ~~~~~~i~~~~~ipvi~-~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~~~~ 229 (231)
T cd02801 172 WDYIAEIKEAVSIPVIA-NGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKEL 229 (231)
T ss_pred HHHHHHHHhCCCCeEEE-eCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhhhhc
Confidence 3445555554 677665 4445578888888886 7887766654 488888877654
No 244
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=43.33 E-value=1.4e+02 Score=28.75 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCceEEEecCC-CCCCCChhhHHHHHHHHHHc--CCceeee-cCCCCChhHHHHHHhcCCC
Q 024296 168 RRETTEAAMETVKLALEMRDLGVVGIDLSG-NPTKGEWTTFLPALKFAREQ--GLQITLH-CGEIPNKEEIQSMLDFLPQ 243 (269)
Q Consensus 168 R~~~~~~~~~~~~~a~~~~~~~vvGidl~G-~E~~~~~~~f~~~f~~ar~~--gl~~t~H-AGE~~~~e~i~~ai~l~a~ 243 (269)
+..+++++.+.++......+ .+-++.++| .|.--.+..-...+..+++. |+++++- .| ...++.+.+.+++|.+
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~-~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG-~~l~e~i~~L~~~gvd 135 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIP-QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNG-LMLPEHVDRLVDLGVG 135 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcC-CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCC-CCCHHHHHHHHHCCCC
Confidence 45788888888876665432 233344566 45433333345667777776 7888775 33 2236666666566655
Q ss_pred cc
Q 024296 244 RI 245 (269)
Q Consensus 244 RI 245 (269)
.+
T Consensus 136 ~V 137 (442)
T TIGR01290 136 HV 137 (442)
T ss_pred eE
Confidence 44
No 245
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=43.11 E-value=1.8e+02 Score=26.96 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCC-CCChhhHHHHHHHHHHcCCceeeec---CC------CC--ChhH-HHH
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPT-KGEWTTFLPALKFAREQGLQITLHC---GE------IP--NKEE-IQS 236 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~-~~~~~~f~~~f~~ar~~gl~~t~HA---GE------~~--~~e~-i~~ 236 (269)
.+++++.+.+..+.+ .++.-|.+.|.+. ..+.+.+.++++..++..=.+.+|+ .| .. ..+. +..
T Consensus 79 l~~eeI~~~a~~~~~---~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~ 155 (351)
T TIGR03700 79 MSLEEIVARVKEAYA---PGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDE 155 (351)
T ss_pred CCHHHHHHHHHHHHH---CCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 467777666665543 3444455554433 2345678889999988753344553 11 01 2333 444
Q ss_pred HHhcCCCcccc-cc
Q 024296 237 MLDFLPQRIGH-AC 249 (269)
Q Consensus 237 ai~l~a~RIGH-G~ 249 (269)
.-+.|.+|+-| |.
T Consensus 156 LkeAGld~~~~~g~ 169 (351)
T TIGR03700 156 LKEAGLDSMPGGGA 169 (351)
T ss_pred HHHcCCCcCCCCcc
Confidence 44579999988 44
No 246
>PTZ00413 lipoate synthase; Provisional
Probab=42.95 E-value=2e+02 Score=27.33 Aligned_cols=88 Identities=10% Similarity=0.077 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCC---CCChhhHHHHHHHHHHc--CCceeeecCCCCC-hhHHHHHHhcCCCc
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPT---KGEWTTFLPALKFAREQ--GLQITLHCGEIPN-KEEIQSMLDFLPQR 244 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~---~~~~~~f~~~f~~ar~~--gl~~t~HAGE~~~-~e~i~~ai~l~a~R 244 (269)
++++..+..+.+.+..-. .+ +=.+|+-+ ++....|..+++..|+. ++.+-+-.|...+ .+.+....+.|++|
T Consensus 178 D~eEp~~vA~av~~~Gl~-~~-VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG~dv 255 (398)
T PTZ00413 178 DPNEPEKVAKAVAEMGVD-YI-VMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPLSV 255 (398)
T ss_pred CHHHHHHHHHHHHHcCCC-EE-EEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcCCCE
Confidence 456655665555544322 22 22223221 23457899999999985 6888888888754 45666666789999
Q ss_pred ccccccCCHHHHHHHH
Q 024296 245 IGHACCFEEEEWRKLK 260 (269)
Q Consensus 245 IGHG~~~~~~l~~~l~ 260 (269)
+.|.+...|.+...++
T Consensus 256 ynHNLETv~rLyp~VR 271 (398)
T PTZ00413 256 YAHNIECVERITPYVR 271 (398)
T ss_pred EecccccCHhHHHHHc
Confidence 9999866555444443
No 247
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.87 E-value=1.9e+02 Score=26.92 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=37.1
Q ss_pred eEEEEEEEeC--CCCHHHHHHHHHHHHhhCCC-ceEEEe-cCCCCCCCChhhHH-HHHHHHHHcCCceeee
Q 024296 159 YVRLLLSIDR--RETTEAAMETVKLALEMRDL-GVVGID-LSGNPTKGEWTTFL-PALKFAREQGLQITLH 224 (269)
Q Consensus 159 ~~rli~~~~R--~~~~~~~~~~~~~a~~~~~~-~vvGid-l~G~E~~~~~~~f~-~~f~~ar~~gl~~t~H 224 (269)
.+.+-+.+.+ ..+++++.+.++++...... .++-++ ..|.+...|...-+ ...+..++.|+.+|+-
T Consensus 250 ri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR 320 (345)
T PRK14466 250 RVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIR 320 (345)
T ss_pred EEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 3445555555 45788899998888654311 122222 12323333444444 4444578889999886
No 248
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=42.74 E-value=2.9e+02 Score=25.93 Aligned_cols=66 Identities=23% Similarity=0.367 Sum_probs=41.2
Q ss_pred CceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEE--EecCCCCCCCChhhHHHHHHHHHHcCCceeeecCC
Q 024296 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVG--IDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE 227 (269)
Q Consensus 157 ~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvG--idl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE 227 (269)
.+.+.+...+.+....+...+..++ ...+++| |-..+.. ......+.++|+.+++.|+++.+|+-+
T Consensus 102 ~vd~~~~~~~~~~~~~~~l~e~~~l----~~~Gv~g~~f~~~~~~-~~~~~~l~~~~~~a~~~g~~v~iH~E~ 169 (411)
T TIGR00857 102 LVDVHLYGGVTQGNQGKELTEAYEL----KEAGAVGRMFTDDGSE-VQDILSMRRALEYAAIAGVPIALHAED 169 (411)
T ss_pred cccEEEEEEEecCCccccHHHHHHH----HHCCcEEEEEEeCCcc-cCCHHHHHHHHHHHHHcCCEEEEecCC
Confidence 4556666666665443333333332 2346888 6544322 234467888999999999999999754
No 249
>PRK05611 rpmD 50S ribosomal protein L30; Reviewed
Probab=42.60 E-value=54 Score=22.29 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=33.9
Q ss_pred CceeeecCCCCChhHHHHHHh-cCCCcccccccC--CHHHHHHHHh
Q 024296 219 LQITLHCGEIPNKEEIQSMLD-FLPQRIGHACCF--EEEEWRKLKS 261 (269)
Q Consensus 219 l~~t~HAGE~~~~e~i~~ai~-l~a~RIGHG~~~--~~~l~~~l~~ 261 (269)
+.+|..-|-.+.++..++++. ||-.|++|.+-. +|.+.-++..
T Consensus 4 ~~I~~vRs~ig~~~~~r~tl~~LgL~k~~~~v~~~dtp~~rGmi~k 49 (59)
T PRK05611 4 LKITLVKSLIGRKPKQRATLRGLGLRKINSTVELEDTPAIRGMINK 49 (59)
T ss_pred EEEEEeecCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHH
Confidence 677888888888888999998 899999999864 5766555543
No 250
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=42.30 E-value=80 Score=28.91 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=33.7
Q ss_pred HcCCceeeecCCCC-ChhHHHHHHh-cC--CCcc--ccccc-CCHHHHHHHHhCCCceee
Q 024296 216 EQGLQITLHCGEIP-NKEEIQSMLD-FL--PQRI--GHACC-FEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 216 ~~gl~~t~HAGE~~-~~e~i~~ai~-l~--a~RI--GHG~~-~~~~l~~~l~~~~I~lEi 268 (269)
+-|++++.|.+-.. .+..+.+.+. .| ++|+ ||-=. .+.+.+..++++|.-|+.
T Consensus 153 ~TG~pI~~H~~~g~~~~~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l~~ 212 (308)
T PF02126_consen 153 ETGAPISTHTGRGTRMGLEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGVYLEF 212 (308)
T ss_dssp HHT-EEEEEESTTGTCHHHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT-EEEE
T ss_pred HhCCeEEEcCCCCCcCHHHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCEEEe
Confidence 34999999998765 4444555543 44 6775 77532 255678888889988775
No 251
>PRK05660 HemN family oxidoreductase; Provisional
Probab=42.27 E-value=86 Score=29.36 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=39.3
Q ss_pred eEEEecCCCC-CCCChhhHHHHHHHHHHc-----CCceeeecC-CCCChhHHHHHHhcCCCcccccccC-CHHHHHHH
Q 024296 190 VVGIDLSGNP-TKGEWTTFLPALKFAREQ-----GLQITLHCG-EIPNKEEIQSMLDFLPQRIGHACCF-EEEEWRKL 259 (269)
Q Consensus 190 vvGidl~G~E-~~~~~~~f~~~f~~ar~~-----gl~~t~HAG-E~~~~e~i~~ai~l~a~RIGHG~~~-~~~l~~~l 259 (269)
+--|-+.|.+ ..-++..+..++..+++. +..+|+-+- ++.+.+.+.....+|..||.=|++. ++++++.+
T Consensus 59 v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l 136 (378)
T PRK05660 59 VHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRL 136 (378)
T ss_pred eeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHh
Confidence 4445555433 333556677777766662 345555552 3334455555555788888888864 55544443
No 252
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=42.04 E-value=2.8e+02 Score=27.13 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=49.9
Q ss_pred EEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHh
Q 024296 160 VRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD 239 (269)
Q Consensus 160 ~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~ 239 (269)
-||++.+.+...++. .+.++...+..- .++-+|.+.... ..-.+.+++.|+..-.+.+=||-..+++.+.++++
T Consensus 228 GrL~Vgaavg~~~~~-~~~~~~l~~ag~-d~i~id~a~G~s----~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~ 301 (495)
T PTZ00314 228 GQLLVGAAISTRPED-IERAAALIEAGV-DVLVVDSSQGNS----IYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLID 301 (495)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHCCC-CEEEEecCCCCc----hHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHH
Confidence 467776666665554 344444444322 388888863211 22245677777762234445588788899999999
Q ss_pred cCCCcc
Q 024296 240 FLPQRI 245 (269)
Q Consensus 240 l~a~RI 245 (269)
.|++=|
T Consensus 302 aGad~I 307 (495)
T PTZ00314 302 AGADGL 307 (495)
T ss_pred cCCCEE
Confidence 999887
No 253
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=41.96 E-value=47 Score=26.40 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=11.2
Q ss_pred HHHHHhcCCeEEEEecC
Q 024296 82 VEDFASENIVYLELRTT 98 (269)
Q Consensus 82 ~~~~~~dnV~Y~Elr~~ 98 (269)
+.+.-..||+|+|+|..
T Consensus 32 i~~QL~~GiR~lDlrv~ 48 (146)
T PF00388_consen 32 IREQLESGIRYLDLRVW 48 (146)
T ss_dssp HHHHHHTT--EEEEEEE
T ss_pred HHHHHhccCceEEEEEE
Confidence 34445679999999986
No 254
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=41.59 E-value=3.7e+02 Score=26.81 Aligned_cols=122 Identities=12% Similarity=0.085 Sum_probs=76.4
Q ss_pred cCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCceEEEEEEE---eCCCCHHHHHHHHH
Q 024296 104 SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSI---DRRETTEAAMETVK 180 (269)
Q Consensus 104 ~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~~---~R~~~~~~~~~~~~ 180 (269)
.-+.|.+++++.+.+.++-+++... ......+..++.-++. .| -+++.+.++++
T Consensus 135 ~l~~s~ee~l~~~~~~v~~ak~~~~----------------------~~~~~~~~~~~v~f~~Ed~~r-~d~~~l~~~~~ 191 (564)
T TIGR00970 135 VFRASRAEVQAIATDGTKLVRKCTK----------------------QAAKYPGTQWRFEYSPESFSD-TELEFAKEVCE 191 (564)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcc----------------------cccccccceEEEEEecccCCC-CCHHHHHHHHH
Confidence 4578999999999999876654100 0000112222333332 23 36888888888
Q ss_pred HHHhhCC---CceEEEecCCCCCCCChhhHHHHHHHHHHc-----CCceeeecCCCCCh--hHHHHHHhcCCCcccccc
Q 024296 181 LALEMRD---LGVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQRIGHAC 249 (269)
Q Consensus 181 ~a~~~~~---~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-----gl~~t~HAGE~~~~--e~i~~ai~l~a~RIGHG~ 249 (269)
.+.+... ++++-|.|+-.=....|..+..+++.+++. ++++.+|+-=+.|- -|...|++.|++++. |+
T Consensus 192 ~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~-gt 269 (564)
T TIGR00970 192 AVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIE-GC 269 (564)
T ss_pred HHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHHhCCCEEE-ee
Confidence 8887632 234444443211134577888888887653 46799999877653 577888999999987 54
No 255
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=41.52 E-value=42 Score=30.43 Aligned_cols=96 Identities=17% Similarity=0.101 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHH-HHHHcCCceeeecCCCCChhHHHHHHhcCCCccccc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 248 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG 248 (269)
.+.+.+..+++.|.+.+.+.|+.+.-..-.. .+.+.+.++.+ .|++.++|+.+|.--..+.+.+..|++.|-+=| -
T Consensus 25 ~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~-~~~~~~~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~GftSV--M 101 (287)
T PF01116_consen 25 YNLETARAVIEAAEELNSPVILQISPSEVKY-MGLEYLAAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGFTSV--M 101 (287)
T ss_dssp SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHH-HHHHHHHHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTSSEE--E
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcchhhhhh-hhHHHHHHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCcccc--c
Confidence 3578889999999888887777774321110 12344555444 455569999999977777899999998743221 1
Q ss_pred cc---CC--------HHHHHHHHhCCCceee
Q 024296 249 CC---FE--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 249 ~~---~~--------~~l~~~l~~~~I~lEi 268 (269)
+. ++ -+++++....|+.+|.
T Consensus 102 ~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEa 132 (287)
T PF01116_consen 102 IDGSALPFEENIAITREVVEYAHAYGVSVEA 132 (287)
T ss_dssp EE-TTS-HHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred ccCCcCCHHHHHHHHHHHHHhhhhhCCEEEE
Confidence 11 11 1378889999999984
No 256
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=41.05 E-value=1.4e+02 Score=27.85 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=34.3
Q ss_pred CCceeeecCCCCChhHHHHHHhcCCCcccccccCC----HHHHHHHHh
Q 024296 218 GLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFE----EEEWRKLKS 261 (269)
Q Consensus 218 gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~~----~~l~~~l~~ 261 (269)
++|+++|-|=..+.+.++.|+.+|..-|-=++.+. ..+.+.+.+
T Consensus 245 ~ipLVLHGgSG~~~e~i~kai~~GI~KiNi~T~l~~a~~~~i~~~~~~ 292 (345)
T cd00946 245 PLYFVFHGGSGSTKEEIREAISYGVVKMNIDTDTQWAYWEGVRNYYLK 292 (345)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHcCCeeEEeCcHHHHHHHHHHHHHHhh
Confidence 68999999987788999999999998888887552 345555544
No 257
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.47 E-value=2.4e+02 Score=24.27 Aligned_cols=95 Identities=16% Similarity=0.132 Sum_probs=66.7
Q ss_pred EEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CC--ceeeecCCCCChhHHHHHHh
Q 024296 163 LLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GL--QITLHCGEIPNKEEIQSMLD 239 (269)
Q Consensus 163 i~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl--~~t~HAGE~~~~e~i~~ai~ 239 (269)
++-+.|..+.+.+...++.+.+- |+-.+-+.=+ .+.-.+.++.+++. +- .+.+=||=..+++.++.|++
T Consensus 15 vi~vir~~~~~~a~~~~~al~~~---Gi~~iEit~~-----~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~ 86 (213)
T PRK06552 15 VVAVVRGESKEEALKISLAVIKG---GIKAIEVTYT-----NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL 86 (213)
T ss_pred EEEEEECCCHHHHHHHHHHHHHC---CCCEEEEECC-----CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH
Confidence 56678999999888888776653 4444433321 12244556666553 22 48888998889999999999
Q ss_pred cCCCcccccccCCHHHHHHHHhCCCce
Q 024296 240 FLPQRIGHACCFEEEEWRKLKSSKIPV 266 (269)
Q Consensus 240 l~a~RIGHG~~~~~~l~~~l~~~~I~l 266 (269)
.|++=|= .-..+|++++..++++|++
T Consensus 87 aGA~Fiv-sP~~~~~v~~~~~~~~i~~ 112 (213)
T PRK06552 87 AGAQFIV-SPSFNRETAKICNLYQIPY 112 (213)
T ss_pred cCCCEEE-CCCCCHHHHHHHHHcCCCE
Confidence 9987654 2245799999999999875
No 258
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=40.38 E-value=2.3e+02 Score=25.44 Aligned_cols=73 Identities=8% Similarity=0.083 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhhC-CCceEEEecCCCCCCCChhhHHHHHHHHHHc---CCceeeecCCCCChhHHH---HHHhcCCC
Q 024296 171 TTEAAMETVKLALEMR-DLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---GLQITLHCGEIPNKEEIQ---SMLDFLPQ 243 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~-~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~---gl~~t~HAGE~~~~e~i~---~ai~l~a~ 243 (269)
+.+...+.++...... -++++-.+..|.-..-+.++...+++.+.+. .+++.+|+|..+..+.+. .|.++|++
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad 98 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYD 98 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCC
Confidence 4556666667665543 3344444444544444567777777666553 599999999876555443 34445655
No 259
>cd00355 Ribosomal_L30_like Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.
Probab=40.16 E-value=72 Score=20.95 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=28.5
Q ss_pred cCCCCChhHHHHHHh-cCCCcccccccC--CHHHHHHHHhCC
Q 024296 225 CGEIPNKEEIQSMLD-FLPQRIGHACCF--EEEEWRKLKSSK 263 (269)
Q Consensus 225 AGE~~~~e~i~~ai~-l~a~RIGHG~~~--~~~l~~~l~~~~ 263 (269)
-|=.+.++.+++.+. ||-.|++|++.. +|++..+++.=.
T Consensus 6 rs~ig~~~~~~~tl~~LgL~k~~~~v~~~~tp~~~gml~kV~ 47 (53)
T cd00355 6 RSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRKVK 47 (53)
T ss_pred cCCCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhcc
Confidence 333445677888887 899999999865 688877776533
No 260
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=40.03 E-value=1.7e+02 Score=26.40 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH---cCCceeeecCCCCChhHHH---HHHhcCCC
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE---QGLQITLHCGEIPNKEEIQ---SMLDFLPQ 243 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~---~gl~~t~HAGE~~~~e~i~---~ai~l~a~ 243 (269)
.+.+...+.++......-++++-.+..|.-..-+.++-..+++.+.+ ..+++.+|+|..+..+.+. .|.++|++
T Consensus 18 iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad 97 (294)
T TIGR02313 18 IDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGAD 97 (294)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCC
Confidence 35666677777766543334444454554333455666677665544 3599999999866555543 34445655
Q ss_pred cc
Q 024296 244 RI 245 (269)
Q Consensus 244 RI 245 (269)
-+
T Consensus 98 ~v 99 (294)
T TIGR02313 98 AA 99 (294)
T ss_pred EE
Confidence 43
No 261
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=39.93 E-value=2.4e+02 Score=24.17 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEecC
Q 024296 76 RITQEVVEDFASENIVYLELRTT 98 (269)
Q Consensus 76 ~~~~~~~~~~~~dnV~Y~Elr~~ 98 (269)
+-+.++++.+.+-|+..+|+.++
T Consensus 20 e~a~~~~~al~~~Gi~~iEit~~ 42 (204)
T TIGR01182 20 DDALPLAKALIEGGLRVLEVTLR 42 (204)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCC
Confidence 33577888899999999999874
No 262
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=39.71 E-value=2.7e+02 Score=25.07 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCC-CChhhHHHHHHHHHHcCCceeeec---CCC------C--ChhHHHHH
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTK-GEWTTFLPALKFAREQGLQITLHC---GEI------P--NKEEIQSM 237 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~-~~~~~f~~~f~~ar~~gl~~t~HA---GE~------~--~~e~i~~a 237 (269)
.++++..+.++.+.+. ++.-|.|+|.+.. .+...+.++++..++.+..+.+|+ +|. . ..+.+.+.
T Consensus 36 ls~eeI~~~~~~~~~~---G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~ 112 (309)
T TIGR00423 36 LSLEEILEKVKEAVAK---GATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKR 112 (309)
T ss_pred CCHHHHHHHHHHHHHC---CCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 5777777777766543 4555666654432 345667889999998876666653 332 1 12344444
Q ss_pred H-hcCCCcccc-cc
Q 024296 238 L-DFLPQRIGH-AC 249 (269)
Q Consensus 238 i-~l~a~RIGH-G~ 249 (269)
+ +.|.+|+-| |.
T Consensus 113 LkeAGl~~i~~~g~ 126 (309)
T TIGR00423 113 LKKAGLDSMPGTGA 126 (309)
T ss_pred HHHcCCCcCCCCcc
Confidence 4 479999944 54
No 263
>PRK01060 endonuclease IV; Provisional
Probab=39.70 E-value=2.6e+02 Score=24.43 Aligned_cols=43 Identities=12% Similarity=0.097 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCeEEEEecC-CCCcccCCCCHHHHHHHHHHHHH
Q 024296 78 TQEVVEDFASENIVYLELRTT-PKRNESIGMSKRSYMDAVVEGLR 121 (269)
Q Consensus 78 ~~~~~~~~~~dnV~Y~Elr~~-p~~~~~~g~~~~~~~~~v~~~~~ 121 (269)
+.++++.+++-|...+|+... |.......++.++ ++.+.+.++
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~-~~~lk~~~~ 57 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELN-IEAFKAACE 57 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHH-HHHHHHHHH
Confidence 467888899999999999876 5433322344333 444444443
No 264
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=39.56 E-value=1.7e+02 Score=27.42 Aligned_cols=92 Identities=14% Similarity=0.037 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHh--hCCCceEEEecCCCCC-CCChhhHHHHHHHH-----HHcCCc------eeeecCCCCChhHHH
Q 024296 170 ETTEAAMETVKLALE--MRDLGVVGIDLSGNPT-KGEWTTFLPALKFA-----REQGLQ------ITLHCGEIPNKEEIQ 235 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~--~~~~~vvGidl~G~E~-~~~~~~f~~~f~~a-----r~~gl~------~t~HAGE~~~~e~i~ 235 (269)
.+|+++.+.++..-. --+..=|+|+-+-.-. ...|..=.+.++.. ++.++| +++|-|=..+.+.++
T Consensus 195 TdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~ 274 (357)
T TIGR01520 195 TQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIK 274 (357)
T ss_pred CCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHH
Confidence 357777776654311 1123355666653222 23333333344444 234777 999999877889999
Q ss_pred HHHhcCCCcccccccCC----HHHHHHHHh
Q 024296 236 SMLDFLPQRIGHACCFE----EEEWRKLKS 261 (269)
Q Consensus 236 ~ai~l~a~RIGHG~~~~----~~l~~~l~~ 261 (269)
.|+.+|..-|--++.+. ..+.+++.+
T Consensus 275 kai~~GI~KINi~Tdl~~A~~~a~~~~~~~ 304 (357)
T TIGR01520 275 EALSYGVVKMNIDTDTQWAYWEGILNYYKN 304 (357)
T ss_pred HHHHCCCeEEEeCcHHHHHHHHHHHHHHHh
Confidence 99999999988887652 345555654
No 265
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=39.40 E-value=1.7e+02 Score=26.06 Aligned_cols=67 Identities=15% Similarity=-0.011 Sum_probs=46.3
Q ss_pred CCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccccC--C----HHHHHHHH
Q 024296 187 DLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--E----EEEWRKLK 260 (269)
Q Consensus 187 ~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~----~~l~~~l~ 260 (269)
-+++.-+|| |.. ++.-+-+.++..++++.+=.|=. .+++.+.+..|++|++=|..+ + |++++.+.
T Consensus 52 a~~lHvVDL-g~~------n~~~i~~i~~~~~~~v~vGGGIr--~e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~ 122 (253)
T TIGR02129 52 VKGCHVIML-GPN------NDDAAKEALHAYPGGLQVGGGIN--DTNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIV 122 (253)
T ss_pred CCEEEEEEC-CCC------cHHHHHHHHHhCCCCEEEeCCcC--HHHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHH
Confidence 356899999 322 33223333445689998887774 399999999999999999754 2 66666665
Q ss_pred hC
Q 024296 261 SS 262 (269)
Q Consensus 261 ~~ 262 (269)
++
T Consensus 123 ~~ 124 (253)
T TIGR02129 123 SL 124 (253)
T ss_pred HH
Confidence 54
No 266
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=39.02 E-value=3.5e+02 Score=25.74 Aligned_cols=89 Identities=13% Similarity=0.039 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEE---EEecCCCCcccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 024296 69 TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (269)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~dnV~Y~---Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (269)
-+++.+.+++|+ ++.-||-++ |.-.++.. .++++-+.++.++++++.+
T Consensus 137 lsp~~~a~~~y~----~~~GGvD~IKDDE~l~~q~~-----~p~~eRv~a~~~a~~~a~~-------------------- 187 (391)
T cd08209 137 LDLDDLAEQLRE----QALGGVDLIKDDEILFDNPL-----APALERIRACRPVLQEVYE-------------------- 187 (391)
T ss_pred CCHHHHHHHHHH----HHhCCCCcccccccCCCCCC-----CCHHHHHHHHHHHHHHHHH--------------------
Confidence 345666665555 455565555 56555544 3678889999999998765
Q ss_pred ccccccCCCCCCceEEEEEEEeCCCCHHHHHHHHHHHHhhCCC-ceEEEecCC
Q 024296 146 MNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDL-GVVGIDLSG 197 (269)
Q Consensus 146 ~~~~~~~~~~~~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~-~vvGidl~G 197 (269)
++|- +-++.+|=+-+.++..+..+.+.+...+ .++.+..+|
T Consensus 188 ---------eTG~--~~~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~G 229 (391)
T cd08209 188 ---------QTGR--RTLYAVNLTGPVFTLKEKARRLVEAGANALLFNVFAYG 229 (391)
T ss_pred ---------hhCC--cceEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeccccc
Confidence 2222 2355566666778888888888775432 244444444
No 267
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=38.68 E-value=31 Score=26.43 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=25.3
Q ss_pred ChhHHHHHHhcC-CCc--ccccc---cCCHHHHHHHHhCCCceee
Q 024296 230 NKEEIQSMLDFL-PQR--IGHAC---CFEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 230 ~~e~i~~ai~l~-a~R--IGHG~---~~~~~l~~~l~~~~I~lEi 268 (269)
+++++...+... ++= ||-|- ..+|++++.++++||.+|+
T Consensus 40 ~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~ 84 (109)
T cd00248 40 DPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEV 84 (109)
T ss_pred CHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEE
Confidence 345555444433 221 25554 3578999999999999996
No 268
>TIGR01308 rpmD_bact ribosomal protein L30, bacterial/organelle. This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models.
Probab=38.33 E-value=84 Score=21.00 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=31.7
Q ss_pred CceeeecCCCCChhHHHHHHh-cCCCcccccccC--CHHHHHHHHh
Q 024296 219 LQITLHCGEIPNKEEIQSMLD-FLPQRIGHACCF--EEEEWRKLKS 261 (269)
Q Consensus 219 l~~t~HAGE~~~~e~i~~ai~-l~a~RIGHG~~~--~~~l~~~l~~ 261 (269)
+++|..-|-.+.++..++.+. ||-.|++|.+-. +|.+.-++..
T Consensus 1 lkItlvrs~ig~~~~~r~tl~~LgL~k~~~~v~~~dtp~irGMi~k 46 (55)
T TIGR01308 1 IKVTLVRSLIGRPKKQRKTLKALGLRKIGRQVVLEDNPAIRGMVNK 46 (55)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHH
Confidence 356666666677788898888 899999999864 5776555543
No 269
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=38.30 E-value=78 Score=27.04 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeec
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 225 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HA 225 (269)
.+++++.+.++....+.....-+|.+.|.|.--.+..+.++++.+++.|+++++.-
T Consensus 46 ~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~T 101 (235)
T TIGR02493 46 VTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQPEFLSELFKACKELGIHTCLDT 101 (235)
T ss_pred CCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEc
Confidence 46776666665544432211235677787765444445689999999999988874
No 270
>PF00327 Ribosomal_L30: Ribosomal protein L30p/L7e; InterPro: IPR016082 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L30 is one of the proteins from the large ribosomal subunit. L30 belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups bacteria and archaea L30, yeast mitochondrial L33, and Drosophila melanogaster, Dictyostelium discoideum (Slime mold), fungal and mammalian L7 ribosomal proteins. L30 from bacteria are small proteins of about 60 residues, those from archaea are proteins of about 150 residues, and eukaryotic L7 are proteins of about 250 to 270 residues. This entry represents a domain with a ferredoxin-like fold, with a core structure consisting of core: beta-alpha-beta-alpha-beta. This domain is found in prokaryotic ribosomal protein L30 (short-chain member of the family), as well as in archaeal L30 (L30a) (long-chain member of the family), the later containing an additional C-terminal (sub)domain).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3DF2_Y 3DF4_Y 3O5H_G 3O58_G 1S1I_F 3IZS_e 1M1K_X 1M90_X 1QVG_V 1YIT_W ....
Probab=38.25 E-value=51 Score=21.55 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=29.6
Q ss_pred ceeeecCCCCChhHHHHHHh-cCCCcccccccC--CHHHHHHHH
Q 024296 220 QITLHCGEIPNKEEIQSMLD-FLPQRIGHACCF--EEEEWRKLK 260 (269)
Q Consensus 220 ~~t~HAGE~~~~e~i~~ai~-l~a~RIGHG~~~--~~~l~~~l~ 260 (269)
.++..-|-.+-++.+++++. ||-.|+++++.. +|....++.
T Consensus 3 ~V~~irs~~g~~~~~~~tl~~LgL~k~~~~v~~~~t~~~~gml~ 46 (52)
T PF00327_consen 3 FVTRIRSPIGAPPKVRKTLKALGLRKINQAVFVKNTPSIRGMLK 46 (52)
T ss_dssp EEEESS-STTSSHHHHHHHHHTT-SSTTEEEEEESSHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHcCCCcCCCEEEEECCHHHHHHHH
Confidence 35566666666788999888 899999999864 687766654
No 271
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=38.19 E-value=32 Score=23.35 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=19.3
Q ss_pred hhcccc-----CCCCCHHHHHHHHHHhccCCCcc
Q 024296 11 ELHAHL-----NGSIRDSTLLELARVLGEKGVIV 39 (269)
Q Consensus 11 eLH~HL-----~Gs~~~~tl~~la~~~~~~g~~~ 39 (269)
|||+|- +|.++++.+.+.|++ +|+..
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~~---~g~~~ 31 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKE---LGLKA 31 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHHH---cCCCE
Confidence 577774 567899999999885 66543
No 272
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=38.10 E-value=60 Score=28.14 Aligned_cols=77 Identities=18% Similarity=0.155 Sum_probs=51.2
Q ss_pred hhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccccC--CHHHHHHHHh
Q 024296 184 EMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKS 261 (269)
Q Consensus 184 ~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~~~l~~~l~~ 261 (269)
...-+.+.=+||.|...+. +..+.-+-+.++..++++++=.|= .+.+.+...++.|++|+-=|..+ +|++++.+.+
T Consensus 40 ~~g~~~l~ivDLdaa~~g~-~~n~~~i~~i~~~~~~~i~vgGGI-rs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~ 117 (229)
T PF00977_consen 40 EQGADELHIVDLDAAKEGR-GSNLELIKEIAKETGIPIQVGGGI-RSIEDAERLLDAGADRVVIGTEALEDPELLEELAE 117 (229)
T ss_dssp HTT-SEEEEEEHHHHCCTH-HHHHHHHHHHHHHSSSEEEEESSE--SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHH
T ss_pred HcCCCEEEEEEccCcccCc-hhHHHHHHHHHhcCCccEEEeCcc-CcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHH
Confidence 4455679999998765322 233333334455558999998885 46788889999999998878654 6777766665
Q ss_pred C
Q 024296 262 S 262 (269)
Q Consensus 262 ~ 262 (269)
+
T Consensus 118 ~ 118 (229)
T PF00977_consen 118 R 118 (229)
T ss_dssp H
T ss_pred H
Confidence 3
No 273
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=37.78 E-value=2.6e+02 Score=24.91 Aligned_cols=18 Identities=6% Similarity=0.019 Sum_probs=13.4
Q ss_pred HHHHHHhcCCeEEEEecC
Q 024296 81 VVEDFASENIVYLELRTT 98 (269)
Q Consensus 81 ~~~~~~~dnV~Y~Elr~~ 98 (269)
.+.+....||+|+|||..
T Consensus 39 ~~~~qL~~G~R~lDir~~ 56 (274)
T cd00137 39 MYRQQLLSGCRCVDIRCW 56 (274)
T ss_pred HHHHHHHcCCcEEEEEee
Confidence 334445689999999975
No 274
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=37.68 E-value=3.5e+02 Score=25.40 Aligned_cols=51 Identities=27% Similarity=0.373 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhCCCc-eEEEecCCCCCCCChhhHHHHHHHHHHcCCceeee
Q 024296 174 AAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (269)
Q Consensus 174 ~~~~~~~~a~~~~~~~-vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~H 224 (269)
...+.++++....... ++=+...+...........+++++|++.|+++|+-
T Consensus 229 av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e 280 (415)
T cd01297 229 ALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTAD 280 (415)
T ss_pred HHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEE
Confidence 3445555555443221 33333332222234466778888899989988765
No 275
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=37.64 E-value=3.2e+02 Score=25.42 Aligned_cols=69 Identities=13% Similarity=0.196 Sum_probs=42.0
Q ss_pred CCceEEEEEEEeCCCCHHHHHHHHHHHHhhCC-CceEEEecC-----CCC---CCCChhhHHH-HHHHHHHcCCceeee
Q 024296 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRD-LGVVGIDLS-----GNP---TKGEWTTFLP-ALKFAREQGLQITLH 224 (269)
Q Consensus 156 ~~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~-~~vvGidl~-----G~E---~~~~~~~f~~-~f~~ar~~gl~~t~H 224 (269)
..+.+++++.-.-..+++++.+.++++..... +.++.|+|- |.. ...|..+.+. ..+.+++.|+.+|+-
T Consensus 247 ~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR 325 (347)
T PRK14453 247 RKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVR 325 (347)
T ss_pred CcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 46777777765556778899999998876421 224566662 221 2223333333 444567789998875
No 276
>PRK12928 lipoyl synthase; Provisional
Probab=37.41 E-value=3.1e+02 Score=24.73 Aligned_cols=61 Identities=21% Similarity=0.154 Sum_probs=37.8
Q ss_pred CceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCC--------CChhhHHHHHHHHHHcCCc
Q 024296 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTK--------GEWTTFLPALKFAREQGLQ 220 (269)
Q Consensus 157 ~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~--------~~~~~f~~~f~~ar~~gl~ 220 (269)
.+...+|+.+ ..+.++..+.++.+.+...+ .+.+.-.-.+.. .+|+.|...-+.|.+.|++
T Consensus 205 ~~~s~iIvG~--GET~ed~~etl~~Lrel~~d-~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~ 273 (290)
T PRK12928 205 PTKSGLMLGL--GETEDEVIETLRDLRAVGCD-RLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFS 273 (290)
T ss_pred eecccEEEeC--CCCHHHHHHHHHHHHhcCCC-EEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCc
Confidence 3445566664 67788888888888776554 555543333332 2456677777777777653
No 277
>PRK12928 lipoyl synthase; Provisional
Probab=36.91 E-value=3.2e+02 Score=24.68 Aligned_cols=92 Identities=9% Similarity=0.088 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHhhCCC--ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCC--CC--ChhHHHHHHhcCC
Q 024296 169 RETTEAAMETVKLALEMRDL--GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE--IP--NKEEIQSMLDFLP 242 (269)
Q Consensus 169 ~~~~~~~~~~~~~a~~~~~~--~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE--~~--~~e~i~~ai~l~a 242 (269)
..++++..+.++.+.+..-. .++|++..... ..+...|.++++..++..-.+.+++.- .. ..+.+......|+
T Consensus 86 ~~~~eei~~~a~~~~~~G~keivitg~~~dDl~-d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag~ 164 (290)
T PRK12928 86 PLDPDEPERVAEAVAALGLRYVVLTSVARDDLP-DGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKP 164 (290)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEeCCccc-ccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcCc
Confidence 35677777777766554322 35566531111 133467888999888863233444421 11 1234555556799
Q ss_pred CcccccccCCHHHHHHHHh
Q 024296 243 QRIGHACCFEEEEWRKLKS 261 (269)
Q Consensus 243 ~RIGHG~~~~~~l~~~l~~ 261 (269)
+.+.|++...|.+++.|..
T Consensus 165 ~i~~hnlEt~~~vl~~m~r 183 (290)
T PRK12928 165 DVFNHNLETVPRLQKAVRR 183 (290)
T ss_pred hhhcccCcCcHHHHHHhCC
Confidence 9999997656666666553
No 278
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=36.79 E-value=2.9e+02 Score=24.15 Aligned_cols=81 Identities=12% Similarity=0.097 Sum_probs=52.8
Q ss_pred HHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHH-HHcCCceeeecCCCCChhHHHHHHhcCCCcccccccC--CHH
Q 024296 178 TVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFA-REQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEE 254 (269)
Q Consensus 178 ~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~a-r~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~~~ 254 (269)
.++...+..-+.+.-+|+.+...... ...+++++. +..++|+.+=.|= .+.+.+.+++..|++++.=|..+ +|+
T Consensus 35 ~a~~~~~~G~~~l~v~Dl~~~~~~~~--~n~~~i~~i~~~~~~pv~~~GGi-~s~~d~~~~~~~Ga~~vivgt~~~~~p~ 111 (254)
T TIGR00735 35 LAQRYDEEGADELVFLDITASSEGRT--TMIDVVERTAETVFIPLTVGGGI-KSIEDVDKLLRAGADKVSINTAAVKNPE 111 (254)
T ss_pred HHHHHHHcCCCEEEEEcCCcccccCh--hhHHHHHHHHHhcCCCEEEECCC-CCHHHHHHHHHcCCCEEEEChhHhhChH
Confidence 33333343346799999987743322 233344333 4457888776665 46788888888999999888754 688
Q ss_pred HHHHHHh
Q 024296 255 EWRKLKS 261 (269)
Q Consensus 255 l~~~l~~ 261 (269)
+++.+.+
T Consensus 112 ~~~~~~~ 118 (254)
T TIGR00735 112 LIYELAD 118 (254)
T ss_pred HHHHHHH
Confidence 7777765
No 279
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=36.78 E-value=3.1e+02 Score=26.23 Aligned_cols=88 Identities=11% Similarity=0.055 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEE---EEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccc
Q 024296 70 DHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM 146 (269)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~dnV~Y~---Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (269)
+++.+.++ +.+++.-||-++ |.-.++.. .++++-+.++.++++++.+
T Consensus 158 sp~~~a~~----~~~~~~GGvD~IKDDE~l~~q~~-----~p~~eRv~~~~~a~~~a~~--------------------- 207 (412)
T TIGR03326 158 STEEHAKV----AYELWSGGVDLLKDDENLTSQPF-----NRFEERVEKLYKVRDKVEA--------------------- 207 (412)
T ss_pred ChHHHHHH----HHHHHhcCCceeecCCCCCCCCC-----ccHHHHHHHHHHHHHHHHH---------------------
Confidence 45555554 445667777666 55555443 3678889999999988754
Q ss_pred cccccCCCCCCceEEEEEEEeCCCCHHHHHHHHHHHHhhCCC-ceEEEecCC
Q 024296 147 NDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDL-GVVGIDLSG 197 (269)
Q Consensus 147 ~~~~~~~~~~~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~-~vvGidl~G 197 (269)
++|- +-++.+|=+-+.++..+..+.+.+...+ .++.+.++|
T Consensus 208 --------eTG~--~~~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~G 249 (412)
T TIGR03326 208 --------ETGE--RKEYLANITAPVREMERRAELVADLGGQYVMVDVVVCG 249 (412)
T ss_pred --------HhCC--cceEEEEecCCHHHHHHHHHHHHHhCCCeEEEEeeccc
Confidence 2232 2345555566678888888888775432 244555555
No 280
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=36.61 E-value=1.7e+02 Score=23.59 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecC
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 226 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAG 226 (269)
.+.++..+.++. ..+ .+-||-+.|.| -.+..+.++++.+++.|+++.+--|
T Consensus 46 lt~eel~~~I~~---~~~-~~~gVt~SGGE--l~~~~l~~ll~~lk~~Gl~i~l~Tg 96 (147)
T TIGR02826 46 LTPEYLTKTLDK---YRS-LISCVLFLGGE--WNREALLSLLKIFKEKGLKTCLYTG 96 (147)
T ss_pred CCHHHHHHHHHH---hCC-CCCEEEEechh--cCHHHHHHHHHHHHHCCCCEEEECC
Confidence 455555555443 222 35699999999 4456788899999999999998876
No 281
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=36.50 E-value=2.4e+02 Score=26.11 Aligned_cols=72 Identities=19% Similarity=0.187 Sum_probs=44.4
Q ss_pred ceEEEecCCCCC-CCChhhHHHHHHHHHHc-CC----ceee--ecCCCCChhHHHHHHhcCCCcccccccC-CHHHHHHH
Q 024296 189 GVVGIDLSGNPT-KGEWTTFLPALKFAREQ-GL----QITL--HCGEIPNKEEIQSMLDFLPQRIGHACCF-EEEEWRKL 259 (269)
Q Consensus 189 ~vvGidl~G~E~-~~~~~~f~~~f~~ar~~-gl----~~t~--HAGE~~~~e~i~~ai~l~a~RIGHG~~~-~~~l~~~l 259 (269)
.+.-|-+.|.+. .-++..+..+++.+++. ++ .+|+ +.+. .+.+.+...-+.|..||.-|++. ++++++.+
T Consensus 51 ~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~-l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l 129 (377)
T PRK08599 51 KLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGD-LTKEKLQVLKDSGVNRISLGVQTFNDELLKKI 129 (377)
T ss_pred ceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCC-CCHHHHHHHHHcCCCEEEEecccCCHHHHHHc
Confidence 465566655443 34567788888888775 33 3444 3322 24455555556899999999975 66665555
Q ss_pred Hh
Q 024296 260 KS 261 (269)
Q Consensus 260 ~~ 261 (269)
.+
T Consensus 130 ~r 131 (377)
T PRK08599 130 GR 131 (377)
T ss_pred CC
Confidence 43
No 282
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=36.37 E-value=1.8e+02 Score=25.66 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=25.2
Q ss_pred cCCceeeec--CCCCCh-hHHHHHHhcCCCcc-cccccC
Q 024296 217 QGLQITLHC--GEIPNK-EEIQSMLDFLPQRI-GHACCF 251 (269)
Q Consensus 217 ~gl~~t~HA--GE~~~~-e~i~~ai~l~a~RI-GHG~~~ 251 (269)
.||.+|+|- -+..+| +.+..++++|..|| -||-..
T Consensus 114 ~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsGg~~ 152 (241)
T COG3142 114 GGLGVTFHRAFDECPDPLEALEQLIELGVERILTSGGKA 152 (241)
T ss_pred cCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCCCcC
Confidence 499999995 344455 45667788999998 577543
No 283
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=36.25 E-value=2.4e+02 Score=25.54 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCC--CC-CCChhhHHHHHHHHHHc---CCceeeecCCCCChhHHH---HHHhc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGN--PT-KGEWTTFLPALKFAREQ---GLQITLHCGEIPNKEEIQ---SMLDF 240 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~--E~-~~~~~~f~~~f~~ar~~---gl~~t~HAGE~~~~e~i~---~ai~l 240 (269)
.+.+...+.++..+. .+|.||=+.|. |. .-+.++...+.+.+.+. .+++.+|+|..+..+.+. .|-+.
T Consensus 26 iD~~~l~~lv~~li~---~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~ 102 (309)
T cd00952 26 VDLDETARLVERLIA---AGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDL 102 (309)
T ss_pred cCHHHHHHHHHHHHH---cCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHh
Confidence 345556666666555 35666655553 32 23556777777766553 599999999877666553 44456
Q ss_pred CCCcc
Q 024296 241 LPQRI 245 (269)
Q Consensus 241 ~a~RI 245 (269)
|++-+
T Consensus 103 Gad~v 107 (309)
T cd00952 103 GADGT 107 (309)
T ss_pred CCCEE
Confidence 77654
No 284
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=36.18 E-value=2.6e+02 Score=27.26 Aligned_cols=91 Identities=8% Similarity=-0.006 Sum_probs=51.4
Q ss_pred eCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcC-CceeeecC---CCC--ChhHHHHHHhc
Q 024296 167 DRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQG-LQITLHCG---EIP--NKEEIQSMLDF 240 (269)
Q Consensus 167 ~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~g-l~~t~HAG---E~~--~~e~i~~ai~l 240 (269)
.|..+++...+-++...+.. ++--|.++.++...+...+.++++...+.| +++...+- ... +++-+..+-+.
T Consensus 219 ~R~rs~e~Vv~Ei~~l~~~~--gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~a 296 (497)
T TIGR02026 219 YRHRDPKKFVDEIEWLVRTH--GVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRA 296 (497)
T ss_pred eecCCHHHHHHHHHHHHHHc--CCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHh
Confidence 46667777666665544321 333444555444445566788888887776 66554431 111 22333333347
Q ss_pred CCCcccccccC-CHHHHHHH
Q 024296 241 LPQRIGHACCF-EEEEWRKL 259 (269)
Q Consensus 241 ~a~RIGHG~~~-~~~l~~~l 259 (269)
|..|+.-|+.. ++++++.+
T Consensus 297 G~~~v~iGiES~~~~~L~~~ 316 (497)
T TIGR02026 297 GLVHISLGTEAAAQATLDHF 316 (497)
T ss_pred CCcEEEEccccCCHHHHHHh
Confidence 99999999864 55444433
No 285
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=36.17 E-value=30 Score=30.78 Aligned_cols=65 Identities=22% Similarity=0.309 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHH-----c-CCceeeecCCCCCh----hHH---------------HHHHhcCCCcccccccCCHHHHHH
Q 024296 204 WTTFLPALKFARE-----Q-GLQITLHCGEIPNK----EEI---------------QSMLDFLPQRIGHACCFEEEEWRK 258 (269)
Q Consensus 204 ~~~f~~~f~~ar~-----~-gl~~t~HAGE~~~~----e~i---------------~~ai~l~a~RIGHG~~~~~~l~~~ 258 (269)
.+........+++ . ++++.+|+.|..+. .++ .+++.-+.+-|.||+.+.++.+++
T Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 222 (333)
T PF01979_consen 143 DEELREAVELAKEFLAAEKLGIPVHIHVAEGTGEVEAMTHLYGMSPIEALDHLGLLEEAIDDGVDLIAHGTHLSDEEIEL 222 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHEEEEEESSSHHHHCCCHHHHSHHHHHHHHHHHSCHHHHHHHCEEEEEHTTSEHHHHHH
T ss_pred hhhhhhHHhhhhhHHHHHhhcccceeeeccCcccceeEeeeeeccchhhhccchhhhhhcccccceeeccccCCHHHhhh
Confidence 3446667777766 3 99999999996544 011 233444789999999998888888
Q ss_pred HHhCCCceee
Q 024296 259 LKSSKIPVRI 268 (269)
Q Consensus 259 l~~~~I~lEi 268 (269)
|++.++.+-.
T Consensus 223 l~~~~~~~~~ 232 (333)
T PF01979_consen 223 LKETGIGIIH 232 (333)
T ss_dssp HHHHTHEEEE
T ss_pred hhccCCcccc
Confidence 8888766544
No 286
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=35.57 E-value=27 Score=31.00 Aligned_cols=28 Identities=39% Similarity=0.650 Sum_probs=22.7
Q ss_pred cchhcccc---CCCCCHHHHHHHHHHhccCCCcc
Q 024296 9 KVELHAHL---NGSIRDSTLLELARVLGEKGVIV 39 (269)
Q Consensus 9 K~eLH~HL---~Gs~~~~tl~~la~~~~~~g~~~ 39 (269)
|+|||||= +|+.+|.-+.++|.. .|+.+
T Consensus 3 ~~DLHvHSt~Sdg~~~p~~vv~~A~~---~g~~v 33 (258)
T COG0613 3 KADLHVHTTASDGGLTPREVVERAKA---KGVDV 33 (258)
T ss_pred ceeeeEecccCCCCCCHHHHHHHHHH---cCCCE
Confidence 68999997 588899999999885 56543
No 287
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=35.50 E-value=33 Score=26.16 Aligned_cols=39 Identities=23% Similarity=0.403 Sum_probs=26.0
Q ss_pred ChhHHHHHHhc--CCCc--cccccc---CCHHHHHHHHhCCCceee
Q 024296 230 NKEEIQSMLDF--LPQR--IGHACC---FEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 230 ~~e~i~~ai~l--~a~R--IGHG~~---~~~~l~~~l~~~~I~lEi 268 (269)
+++++...+.. .++= ||-|-. ++|++.++++++||.+|+
T Consensus 40 ~~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~ 85 (110)
T PF04430_consen 40 TPEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEV 85 (110)
T ss_dssp ETHHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEE
T ss_pred CHHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEE
Confidence 45666665555 3332 366643 479999999999999996
No 288
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=35.45 E-value=3e+02 Score=23.94 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCeEEEEecCC
Q 024296 78 TQEVVEDFASENIVYLELRTTP 99 (269)
Q Consensus 78 ~~~~~~~~~~dnV~Y~Elr~~p 99 (269)
..+.++.+++-|..++|+.+.+
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~ 39 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDE 39 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCC
Confidence 3677888899999999998654
No 289
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=35.44 E-value=4.7e+02 Score=26.23 Aligned_cols=93 Identities=17% Similarity=0.105 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCC----hhHH----HHHHhcCC
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPN----KEEI----QSMLDFLP 242 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~----~e~i----~~ai~l~a 242 (269)
+.+...+.++.+.+..-+.|.-||-..+ ........+.|++.|+.+.+-..-+.+ ++.+ .++.+.|+
T Consensus 89 pddvv~~~v~~a~~~Gvd~irif~~lnd-----~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Ga 163 (582)
T TIGR01108 89 ADDVVERFVKKAVENGMDVFRIFDALND-----PRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGV 163 (582)
T ss_pred chhhHHHHHHHHHHCCCCEEEEEEecCc-----HHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCC
Confidence 4444566667666654343333332222 245666677888888766543222222 2332 34455788
Q ss_pred Ccccccc---cCCH----HHHHHHHhC-CCceee
Q 024296 243 QRIGHAC---CFEE----EEWRKLKSS-KIPVRI 268 (269)
Q Consensus 243 ~RIGHG~---~~~~----~l~~~l~~~-~I~lEi 268 (269)
++|.-.= .+.| ++++.++++ +++|++
T Consensus 164 d~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~ 197 (582)
T TIGR01108 164 DSICIKDMAGILTPKAAYELVSALKKRFGLPVHL 197 (582)
T ss_pred CEEEECCCCCCcCHHHHHHHHHHHHHhCCCceEE
Confidence 8775431 1234 466666654 455543
No 290
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=35.35 E-value=3.5e+02 Score=24.63 Aligned_cols=89 Identities=11% Similarity=0.063 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHHHhhCC-C----ceEEEecCC---CCCCCChhhHHHHHHHHHHcC-C-ceeeecC-CCCChhHHHH
Q 024296 168 RRETTEAAMETVKLALEMRD-L----GVVGIDLSG---NPTKGEWTTFLPALKFAREQG-L-QITLHCG-EIPNKEEIQS 236 (269)
Q Consensus 168 R~~~~~~~~~~~~~a~~~~~-~----~vvGidl~G---~E~~~~~~~f~~~f~~ar~~g-l-~~t~HAG-E~~~~e~i~~ 236 (269)
|..+++...+.++.+.+... . .+.-| .+| ++...++.....+++.+++.+ + .+++-+- +..+++.+..
T Consensus 44 r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif-~sgsf~D~~~~~~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~ 122 (313)
T TIGR01210 44 PEVTEENLINQFDEAIEKYKEKIKDFVIKIF-TSGSFLDDREVPKETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEE 122 (313)
T ss_pred CCCChhHHHHHHHHHHHHhhcccccEEEEEe-cCCCcCCcCcCCHHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHH
Confidence 34477788888887776422 1 12223 333 444456667788888887765 2 2333221 1123455656
Q ss_pred HHhcCCC-cccccccC-CHHHHH
Q 024296 237 MLDFLPQ-RIGHACCF-EEEEWR 257 (269)
Q Consensus 237 ai~l~a~-RIGHG~~~-~~~l~~ 257 (269)
+-+.|.. ||.=|+.. ++++++
T Consensus 123 l~~aG~~~~v~iG~ES~~d~~L~ 145 (313)
T TIGR01210 123 LRKIGVNVEVAVGLETANDRIRE 145 (313)
T ss_pred HHHcCCCEEEEEecCcCCHHHHH
Confidence 5567887 89999875 676664
No 291
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=35.18 E-value=3.2e+02 Score=24.15 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=32.3
Q ss_pred CCceeeecCCCCChhHHHHHHhcCCCcccccccC--C-HHHHHHHHh
Q 024296 218 GLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--E-EEEWRKLKS 261 (269)
Q Consensus 218 gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~-~~l~~~l~~ 261 (269)
++++.. .|=..+++++.+++..|++-++=|..+ + |++.+.+++
T Consensus 243 ~ipiia-~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~i~~ 288 (289)
T cd02810 243 DIPIIG-VGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIKK 288 (289)
T ss_pred CCCEEE-ECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHHHhc
Confidence 577644 555567899999999999998877654 6 887777654
No 292
>PRK09357 pyrC dihydroorotase; Validated
Probab=35.07 E-value=76 Score=29.88 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=28.0
Q ss_pred ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCC
Q 024296 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEI 228 (269)
Q Consensus 189 ~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~ 228 (269)
++++|-..+. ...+...+..+++.|++.|+++.+|+.|.
T Consensus 144 gv~~~~~~~~-~~~~~~~l~~~~~~a~~~g~~v~iH~ee~ 182 (423)
T PRK09357 144 GVVAFSDDGI-PVQDARLMRRALEYAKALDLLIAQHCEDP 182 (423)
T ss_pred CcEEEECCCc-ccCCHHHHHHHHHHHHhcCCEEEEeCCCH
Confidence 5677754331 11234668889999999999999999875
No 293
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=34.96 E-value=2.8e+02 Score=23.49 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=47.7
Q ss_pred CceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCChhHHHHHHhcCCCcccccccC--CHHHHHHHHhC
Q 024296 188 LGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSS 262 (269)
Q Consensus 188 ~~vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~~~l~~~l~~~ 262 (269)
+.+.-+|+.+...+. ....++.+.+++. ++|+.+=.| ..+++.+..++..|++++-=|... +|++++.+.++
T Consensus 44 d~l~v~dl~~~~~~~--~~~~~~i~~i~~~~~~pv~~~Gg-I~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~ 118 (234)
T cd04732 44 KWLHVVDLDGAKGGE--PVNLELIEEIVKAVGIPVQVGGG-IRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKE 118 (234)
T ss_pred CEEEEECCCccccCC--CCCHHHHHHHHHhcCCCEEEeCC-cCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHH
Confidence 456677877653322 2234455555444 788888666 667898999999999998666543 67766666654
No 294
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=34.79 E-value=2.7e+02 Score=24.78 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCC
Q 024296 169 RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEI 228 (269)
Q Consensus 169 ~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~ 228 (269)
..+...-...++.++... +-||-+... ++..+.+..++|++.|+|+..+-...
T Consensus 74 ~~d~~~Q~~~i~~~ia~~---~daIiv~~~----d~~~~~~~v~~a~~aGIpVv~~d~~~ 126 (322)
T COG1879 74 QNDVAKQIAQIEDLIAQG---VDAIIINPV----DPDALTPAVKKAKAAGIPVVTVDSDI 126 (322)
T ss_pred ccChHHHHHHHHHHHHcC---CCEEEEcCC----ChhhhHHHHHHHHHCCCcEEEEecCC
Confidence 344443445555555443 445544432 34679999999999999999887653
No 295
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=34.45 E-value=3.7e+02 Score=24.75 Aligned_cols=88 Identities=11% Similarity=0.043 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhCCCceEEEecCCC-----------CCCC--ChhhHHHHHH---HHHH-c--CCceeeecCCCCChhH
Q 024296 173 EAAMETVKLALEMRDLGVVGIDLSGN-----------PTKG--EWTTFLPALK---FARE-Q--GLQITLHCGEIPNKEE 233 (269)
Q Consensus 173 ~~~~~~~~~a~~~~~~~vvGidl~G~-----------E~~~--~~~~f~~~f~---~ar~-~--gl~~t~HAGE~~~~e~ 233 (269)
+...+.++.+.+..-++|+.++..-+ +.++ .+..+.-..+ .+++ . .+++ +-+|=..+++.
T Consensus 224 ~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipi-ig~GGI~~~~d 302 (335)
T TIGR01036 224 SDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPI-IGVGGISSAQD 302 (335)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCE-EEECCCCCHHH
Confidence 35566667666665567887774321 1111 0111111222 2222 2 3555 55676778899
Q ss_pred HHHHHhcCCCcccccccC---CHHHHHHHHh
Q 024296 234 IQSMLDFLPQRIGHACCF---EEEEWRKLKS 261 (269)
Q Consensus 234 i~~ai~l~a~RIGHG~~~---~~~l~~~l~~ 261 (269)
+.+.+..||+=++=|..+ .|.+.+.+++
T Consensus 303 a~e~l~aGA~~Vqv~ta~~~~Gp~~~~~i~~ 333 (335)
T TIGR01036 303 ALEKIRAGASLLQIYSGFIYWGPPLVKEIVK 333 (335)
T ss_pred HHHHHHcCCcHHHhhHHHHHhCchHHHHHHh
Confidence 999999998877766543 4777766654
No 296
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.42 E-value=3.1e+02 Score=23.83 Aligned_cols=95 Identities=12% Similarity=0.109 Sum_probs=64.0
Q ss_pred EEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHH----HcCCceeeecCCCCChhHHHHHH
Q 024296 163 LLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAR----EQGLQITLHCGEIPNKEEIQSML 238 (269)
Q Consensus 163 i~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar----~~gl~~t~HAGE~~~~e~i~~ai 238 (269)
|+-+.|..+++++.+.++.+.+- |+-.+-+.=+- +.-.+.++..+ +..=.+++=||=..+++.+++|+
T Consensus 17 vi~Vvr~~~~~~a~~~~~al~~g---Gi~~iEiT~~t-----p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~ 88 (222)
T PRK07114 17 MVPVFYHADVEVAKKVIKACYDG---GARVFEFTNRG-----DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYI 88 (222)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHC---CCCEEEEeCCC-----CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHH
Confidence 56678999999998888877653 44444433111 11223333332 22224788888888999999999
Q ss_pred hcCCCcccccccCCHHHHHHHHhCCCce
Q 024296 239 DFLPQRIGHACCFEEEEWRKLKSSKIPV 266 (269)
Q Consensus 239 ~l~a~RIGHG~~~~~~l~~~l~~~~I~l 266 (269)
+.|++=|=-= ..+|+++++.++++|++
T Consensus 89 ~aGA~FiVsP-~~~~~v~~~~~~~~i~~ 115 (222)
T PRK07114 89 QLGANFIVTP-LFNPDIAKVCNRRKVPY 115 (222)
T ss_pred HcCCCEEECC-CCCHHHHHHHHHcCCCE
Confidence 9998765321 35899999999999875
No 297
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=34.24 E-value=3.7e+02 Score=24.57 Aligned_cols=163 Identities=20% Similarity=0.228 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHH---HHHhcCCeEEEEec----------CCCCc---ccCCCCHHHHHHHHHHHHHhhhhcccccccc
Q 024296 70 DHATVTRITQEVVE---DFASENIVYLELRT----------TPKRN---ESIGMSKRSYMDAVVEGLRAVSAVDVDFASR 133 (269)
Q Consensus 70 ~~~~~~~~~~~~~~---~~~~dnV~Y~Elr~----------~p~~~---~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~ 133 (269)
+.++++.+..++.+ .+.+.|.-.+|+-. +|..+ ..-|-+.+.-.+-+.+.++..++.
T Consensus 145 t~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~------- 217 (336)
T cd02932 145 TREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAV------- 217 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHH-------
Confidence 35566666666655 44568999999974 34332 122445555554444444444320
Q ss_pred ccccccccccccccccccCCCCCCceEEEEEE--EeCCCCHHHHHHHHHHHHhhCCCceEEEecC--CCCCC----CChh
Q 024296 134 SIDVRRPVNTKNMNDACNGTRGKKIYVRLLLS--IDRRETTEAAMETVKLALEMRDLGVVGIDLS--GNPTK----GEWT 205 (269)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~--~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~--G~E~~----~~~~ 205 (269)
--.++.+.+|+-.. .....+.+.+.+.++...+. ++--|.+. +.... ..+.
T Consensus 218 ------------------vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~---gvd~iev~~g~~~~~~~~~~~~~ 276 (336)
T cd02932 218 ------------------WPEDKPLFVRISATDWVEGGWDLEDSVELAKALKEL---GVDLIDVSSGGNSPAQKIPVGPG 276 (336)
T ss_pred ------------------cCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHc---CCCEEEECCCCCCcccccCCCcc
Confidence 01233445553321 22344566666666555443 23333332 21111 1122
Q ss_pred hHHHHHHHHHHc-CCceeeecCCCCChhHHHHHHhcC-CCccccccc--CCHHHHHHHHh
Q 024296 206 TFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFL-PQRIGHACC--FEEEEWRKLKS 261 (269)
Q Consensus 206 ~f~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l~-a~RIGHG~~--~~~~l~~~l~~ 261 (269)
.+.+..+..++. ++|+. -.|-..+++...++|.-| +|=|+=|-. .+|++...+++
T Consensus 277 ~~~~~~~~ir~~~~iPVi-~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k~~~ 335 (336)
T cd02932 277 YQVPFAERIRQEAGIPVI-AVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLHAAA 335 (336)
T ss_pred ccHHHHHHHHhhCCCCEE-EeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHHHhh
Confidence 344555666654 78865 456666888888988865 777776654 38888777654
No 298
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=34.15 E-value=3.7e+02 Score=24.66 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhcCC--eEEEEecCC
Q 024296 71 HATVTRITQEVVEDFASENI--VYLELRTTP 99 (269)
Q Consensus 71 ~~~~~~~~~~~~~~~~~dnV--~Y~Elr~~p 99 (269)
-+.+.+..++.++-+...|| ..+|.-+++
T Consensus 138 fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~ 168 (311)
T COG0646 138 FDELVEAYREQVEGLIDGGADLILIETIFDT 168 (311)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEehhccH
Confidence 56677888888888888888 677887765
No 299
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=34.13 E-value=92 Score=29.18 Aligned_cols=97 Identities=13% Similarity=0.166 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhhC-CCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCC------ChhHHHHHHhcC--
Q 024296 171 TTEAAMETVKLALEMR-DLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIP------NKEEIQSMLDFL-- 241 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~-~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~------~~e~i~~ai~l~-- 241 (269)
+.+...+.++.|.++. ...+..+-+.-.........|.++.+.|++.|+.+++-..... +.+++....++|
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~lGi~ 91 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKELGID 91 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHHT-S
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcCCC
Confidence 4677788888887753 3346665544322223346788999999999999999875543 123344444566
Q ss_pred CCcccccccCCHHHHHHHHhCCCceeeC
Q 024296 242 PQRIGHACCFEEEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 242 a~RIGHG~~~~~~l~~~l~~~~I~lEic 269 (269)
.=|+..|+.. +.+..|-.+|+.+|++
T Consensus 92 ~lRlD~Gf~~--~~ia~ls~ng~~I~LN 117 (357)
T PF05913_consen 92 GLRLDYGFSG--EEIAKLSKNGIKIELN 117 (357)
T ss_dssp EEEESSS-SC--HHHHHHTTT-SEEEEE
T ss_pred EEEECCCCCH--HHHHHHHhCCCEEEEE
Confidence 4588888764 3333444447777753
No 300
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=33.88 E-value=2.3e+02 Score=26.50 Aligned_cols=96 Identities=10% Similarity=0.018 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCC-ChhhHHHHHHHHH-Hc-CCceeeecCCCCChhHHHHHHhcCCCcc-
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKG-EWTTFLPALKFAR-EQ-GLQITLHCGEIPNKEEIQSMLDFLPQRI- 245 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~-~~~~f~~~f~~ar-~~-gl~~t~HAGE~~~~e~i~~ai~l~a~RI- 245 (269)
.+.+.+..+++.|.+.+.+.+..+.-. .... +...+..+.+.+. +. ++|+.+|.--..+.+.+..|++.|-+=+
T Consensus 26 ~n~e~~~avi~AAEe~~sPvIlq~s~~--~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~GFtSVM 103 (347)
T PRK13399 26 NNMEQILAIMEAAEATDSPVILQASRG--ARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSGFTSVM 103 (347)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCcc--hhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcCCCEEE
Confidence 358889999999999888766655322 2222 2345666666554 44 4999999988778899999998653211
Q ss_pred -c--------ccccCC------HHHHHHHHhCCCcee
Q 024296 246 -G--------HACCFE------EEEWRKLKSSKIPVR 267 (269)
Q Consensus 246 -G--------HG~~~~------~~l~~~l~~~~I~lE 267 (269)
+ |+.-+. -+++++....||.+|
T Consensus 104 iDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVE 140 (347)
T PRK13399 104 MDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVE 140 (347)
T ss_pred EeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 0 111111 247888888899888
No 301
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=33.70 E-value=2.4e+02 Score=26.43 Aligned_cols=96 Identities=9% Similarity=-0.002 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCC-ChhhHHHHHHHHHH-cC-CceeeecCCCCChhHHHHHHhcCCCcc-
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKG-EWTTFLPALKFARE-QG-LQITLHCGEIPNKEEIQSMLDFLPQRI- 245 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~-~~~~f~~~f~~ar~-~g-l~~t~HAGE~~~~e~i~~ai~l~a~RI- 245 (269)
.+.+.+..+++.|.+.+.+.+..+.- .+... +...+..+.+.+.+ .. +|+.+|.--..+.+.+..|++.|-+=|
T Consensus 24 ~n~e~~~aii~AAEe~~sPvIlq~s~--~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~GFtSVM 101 (347)
T TIGR01521 24 NNMEQMRAIMEAADKTDSPVILQASR--GARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVM 101 (347)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCc--chhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEe
Confidence 35888999999999888876665532 22222 23556666665544 43 999999988778899999998663211
Q ss_pred --cc-------cccC------CHHHHHHHHhCCCcee
Q 024296 246 --GH-------ACCF------EEEEWRKLKSSKIPVR 267 (269)
Q Consensus 246 --GH-------G~~~------~~~l~~~l~~~~I~lE 267 (269)
|. ..-+ .-+++++....||.+|
T Consensus 102 iDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVE 138 (347)
T TIGR01521 102 MDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVE 138 (347)
T ss_pred ecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 11 1011 1247888888899887
No 302
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=33.53 E-value=3.9e+02 Score=25.60 Aligned_cols=88 Identities=14% Similarity=0.027 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEE---EEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccc
Q 024296 70 DHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM 146 (269)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~dnV~Y~---Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (269)
+++.+.+++| +++.-||-.+ |.-.++.. .++++-+.++.++++++.++
T Consensus 153 ~~~~~A~~~y----~~~~GGvD~IKDDE~l~dq~~-----~p~~~Rv~~~~~a~~~a~~e-------------------- 203 (407)
T TIGR03332 153 DLGYLKEQLR----QQALGGVDLVKDDEILFETGL-----APFEKRITEGKEVLQEVYEQ-------------------- 203 (407)
T ss_pred CHHHHHHHHH----HHhccCcccccCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHH--------------------
Confidence 4555544444 4555565554 55455443 36788899999999988652
Q ss_pred cccccCCCCCCceEEEEEEEeCCCCHHHHHHHHHHHHhhCCC-ceEEEecCC
Q 024296 147 NDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDL-GVVGIDLSG 197 (269)
Q Consensus 147 ~~~~~~~~~~~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~-~vvGidl~G 197 (269)
+|- +-++.+|=+-+..+..+..+.+.+.... .++.+.++|
T Consensus 204 ---------TG~--~~~y~~NiT~~~~em~~ra~~a~~~G~~~~mv~~~~~G 244 (407)
T TIGR03332 204 ---------TGH--KTLYAVNLTGRTFDLKDKAKRAAELGADVLLFNVFAYG 244 (407)
T ss_pred ---------HCC--cceEeecCCCCHHHHHHHHHHHHHhCCCEEEEeccccC
Confidence 222 2345555566666777788877765432 244444444
No 303
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=33.39 E-value=1e+02 Score=23.73 Aligned_cols=82 Identities=20% Similarity=0.221 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc---CCceeeecCCCCC-hhHHHHHHhcCCCcc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---GLQITLHCGEIPN-KEEIQSMLDFLPQRI 245 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~---gl~~t~HAGE~~~-~e~i~~ai~l~a~RI 245 (269)
.+++...+.++... ...+ +..+-+.|.|.... .++...+..+.+. ++++++...-... .+.+....+++.++|
T Consensus 28 ~~~e~i~~~~~~~~-~~~~-~~~i~~~~gep~~~-~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i 104 (166)
T PF04055_consen 28 MSPEEILEEIKELK-QDKG-VKEIFFGGGEPTLH-PDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLGVDRI 104 (166)
T ss_dssp CHHHHHHHHHHHHH-HHTT-HEEEEEESSTGGGS-CHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTTCSEE
T ss_pred CCHHHHHHHHHHHh-HhcC-CcEEEEeecCCCcc-hhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcCccEE
Confidence 34666666666553 2222 66666666654322 4577777777765 8888888755443 455556666899999
Q ss_pred cccccC-CHH
Q 024296 246 GHACCF-EEE 254 (269)
Q Consensus 246 GHG~~~-~~~ 254 (269)
.-|+.. +++
T Consensus 105 ~~~l~s~~~~ 114 (166)
T PF04055_consen 105 RISLESLDEE 114 (166)
T ss_dssp EEEEBSSSHH
T ss_pred ecccccCCHH
Confidence 999865 454
No 304
>PRK13985 ureB urease subunit beta; Provisional
Probab=33.36 E-value=1.6e+02 Score=29.50 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=52.2
Q ss_pred CceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccccC-------CHHHHHHHH
Q 024296 188 LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF-------EEEEWRKLK 260 (269)
Q Consensus 188 ~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~-------~~~l~~~l~ 260 (269)
.+++||-+..+- ...+..+..+++.|++.|+++.+|+......-.+.+.+..-..|-=|-+++ .|++++...
T Consensus 212 aGA~GfK~~ed~-g~t~~~I~~aL~vA~~~dv~V~iHtdtlne~g~~E~t~aa~~gr~iH~~H~egaggghapdi~~~~~ 290 (568)
T PRK13985 212 AGAIGFKIHEDW-GTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAG 290 (568)
T ss_pred cCCEEEEECCcc-CCCHHHHHHHHHHHHHcCCEEEEeCCCCCCchhhHHHHHHhcCCeEEEEeccCCCccchhhHHHHcC
Confidence 368888865332 345677888999999999999999977654433444444323566677654 388888777
Q ss_pred hCCC
Q 024296 261 SSKI 264 (269)
Q Consensus 261 ~~~I 264 (269)
+.+|
T Consensus 291 ~~nv 294 (568)
T PRK13985 291 EHNI 294 (568)
T ss_pred CCCc
Confidence 7665
No 305
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=33.25 E-value=2.5e+02 Score=24.68 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCC--C-CCCChhhHHHHHHHHHHc---CCceeeecCCCCChhHHH---HHHhc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGN--P-TKGEWTTFLPALKFAREQ---GLQITLHCGEIPNKEEIQ---SMLDF 240 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~--E-~~~~~~~f~~~f~~ar~~---gl~~t~HAGE~~~~e~i~---~ai~l 240 (269)
.+.+...+.++...+. ++-|+=+.|. | ..-+.++...+.+.+.+. .+++.+|+|..+..+.+. .|.++
T Consensus 15 iD~~~~~~~i~~l~~~---Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~ 91 (281)
T cd00408 15 VDLDALRRLVEFLIEA---GVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEA 91 (281)
T ss_pred cCHHHHHHHHHHHHHc---CCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHc
Confidence 4566666777766654 4555544442 2 223556777777766653 599999999877665553 34446
Q ss_pred CCCccc
Q 024296 241 LPQRIG 246 (269)
Q Consensus 241 ~a~RIG 246 (269)
|++-|-
T Consensus 92 Gad~v~ 97 (281)
T cd00408 92 GADGVL 97 (281)
T ss_pred CCCEEE
Confidence 766544
No 306
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=33.14 E-value=4.1e+02 Score=24.78 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHH---HHHhcCCeEEEEe----------cCCCCcc---cCCCCHHHHHHHHHHHHHhhhhcccccccc
Q 024296 70 DHATVTRITQEVVE---DFASENIVYLELR----------TTPKRNE---SIGMSKRSYMDAVVEGLRAVSAVDVDFASR 133 (269)
Q Consensus 70 ~~~~~~~~~~~~~~---~~~~dnV~Y~Elr----------~~p~~~~---~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~ 133 (269)
+.+++++++.++.+ .+.+-|.--+||. .+|..+. .-|=|.+.-+.-+.+.++..++.
T Consensus 150 t~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~------- 222 (362)
T PRK10605 150 ELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAE------- 222 (362)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHH-------
Confidence 45567776666655 4456888889985 3443321 22346666555555555544331
Q ss_pred ccccccccccccccccccCCCCCCceEEEEEE-----EeCCCCHHH-HHHHHHHHHhhCCCceEEEecCCCCCCCChhhH
Q 024296 134 SIDVRRPVNTKNMNDACNGTRGKKIYVRLLLS-----IDRRETTEA-AMETVKLALEMRDLGVVGIDLSGNPTKGEWTTF 207 (269)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~-----~~R~~~~~~-~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f 207 (269)
.-.+. +.+|+-.. .....+.++ +.+.++...+ .++--|++++...... ..|
T Consensus 223 ------------------vg~~~-igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~---~giD~i~vs~~~~~~~-~~~ 279 (362)
T PRK10605 223 ------------------WGADR-IGIRISPLGTFNNVDNGPNEEADALYLIEQLGK---RGIAYLHMSEPDWAGG-EPY 279 (362)
T ss_pred ------------------cCCCe-EEEEECCccccccCCCCCCHHHHHHHHHHHHHH---cCCCEEEeccccccCC-ccc
Confidence 01122 55554321 122344554 4455444433 2455566654321111 112
Q ss_pred HHHH-HHHHHc-CCceeeecCCCCChhHHHHHHhcC-CCccccccc--CCHHHHHHHHhC
Q 024296 208 LPAL-KFAREQ-GLQITLHCGEIPNKEEIQSMLDFL-PQRIGHACC--FEEEEWRKLKSS 262 (269)
Q Consensus 208 ~~~f-~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l~-a~RIGHG~~--~~~~l~~~l~~~ 262 (269)
...| +..|+. ++++.+-.+ . +++...++|.-| +|=++=|-. ++|++.+.+++.
T Consensus 280 ~~~~~~~ik~~~~~pv~~~G~-~-~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~~~g 337 (362)
T PRK10605 280 SDAFREKVRARFHGVIIGAGA-Y-TAEKAETLIGKGLIDAVAFGRDYIANPDLVARLQRK 337 (362)
T ss_pred cHHHHHHHHHHCCCCEEEeCC-C-CHHHHHHHHHcCCCCEEEECHHhhhCccHHHHHhcC
Confidence 2222 334433 666665544 4 688888898865 888887754 489999988874
No 307
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=32.88 E-value=2.4e+02 Score=24.99 Aligned_cols=74 Identities=12% Similarity=0.089 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEecCCC--C-CCCChhhHHHHHHHHHHc---CCceeeecCCCCChhHH---HHHHh
Q 024296 169 RETTEAAMETVKLALEMRDLGVVGIDLSGN--P-TKGEWTTFLPALKFAREQ---GLQITLHCGEIPNKEEI---QSMLD 239 (269)
Q Consensus 169 ~~~~~~~~~~~~~a~~~~~~~vvGidl~G~--E-~~~~~~~f~~~f~~ar~~---gl~~t~HAGE~~~~e~i---~~ai~ 239 (269)
..+.+...+.++...+. ++-|+=+.|. | ..-+.++...+.+.+.+. .+++.+++|-.+..+.+ +.|.+
T Consensus 17 ~iD~~~~~~~i~~l~~~---Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~ 93 (284)
T cd00950 17 SVDFDALERLIEFQIEN---GTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEK 93 (284)
T ss_pred CcCHHHHHHHHHHHHHc---CCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHH
Confidence 34566666777766653 4555554443 2 233556777777766654 58999999886555544 34444
Q ss_pred cCCCcc
Q 024296 240 FLPQRI 245 (269)
Q Consensus 240 l~a~RI 245 (269)
+|++-|
T Consensus 94 ~G~d~v 99 (284)
T cd00950 94 AGADAA 99 (284)
T ss_pred cCCCEE
Confidence 666543
No 308
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=32.86 E-value=3.1e+02 Score=23.36 Aligned_cols=75 Identities=11% Similarity=0.143 Sum_probs=48.6
Q ss_pred hhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCChhHHHHHHhcCCCcccccccC--CHHHHHHHH
Q 024296 184 EMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLK 260 (269)
Q Consensus 184 ~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~-~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~~~l~~~l~ 260 (269)
++.-+.+.=+|+.+.....+ ...++++...+ -++|+.+ .|-..+.+.+..++..|++++-=|..+ +|++++.+.
T Consensus 41 ~~g~~~i~i~dl~~~~~~~~--~n~~~~~~i~~~~~~pv~~-~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~ 117 (232)
T TIGR03572 41 AKGADELIVLDIDASKRGRE--PLFELISNLAEECFMPLTV-GGGIRSLEDAKKLLSLGADKVSINTAALENPDLIEEAA 117 (232)
T ss_pred HcCCCEEEEEeCCCcccCCC--CCHHHHHHHHHhCCCCEEE-ECCCCCHHHHHHHHHcCCCEEEEChhHhcCHHHHHHHH
Confidence 34445688899988654332 23455555544 4788876 444456777888777899998766543 677766666
Q ss_pred h
Q 024296 261 S 261 (269)
Q Consensus 261 ~ 261 (269)
+
T Consensus 118 ~ 118 (232)
T TIGR03572 118 R 118 (232)
T ss_pred H
Confidence 5
No 309
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=32.72 E-value=3.3e+02 Score=26.02 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccc
Q 024296 175 AMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 249 (269)
Q Consensus 175 ~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~ 249 (269)
..+.++...+..-+ ++.+|.+. ++.....+.+++.|+.-=.+.+=+|-..+.+....++++|++=|.-|+
T Consensus 154 ~~~~v~~lv~aGvD-vI~iD~a~----g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 154 TIERVEELVKAHVD-ILVIDSAH----GHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGI 223 (404)
T ss_pred HHHHHHHHHhcCCC-EEEEECCC----CCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECC
Confidence 34555555554333 89999886 223557777888877521223446777889999999999999886553
No 310
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=32.67 E-value=2.2e+02 Score=26.91 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.1
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCCC
Q 024296 202 GEWTTFLPALKFAREQGLQITLHCGEI 228 (269)
Q Consensus 202 ~~~~~f~~~f~~ar~~gl~~t~HAGE~ 228 (269)
.+.+.+..+++.|++.|+++++|+ |.
T Consensus 160 ~~~~~l~~~~~~a~~~~~~v~~H~-E~ 185 (454)
T TIGR02033 160 VDDEELFEILKRAKELGALLQVHA-EN 185 (454)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEc-CC
Confidence 345778999999999999999997 64
No 311
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=32.65 E-value=2e+02 Score=26.57 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCC----hhhHHHH-HHHHHHc--CCceeeecCCCCChhHHHHHHhcCCC
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGE----WTTFLPA-LKFAREQ--GLQITLHCGEIPNKEEIQSMLDFLPQ 243 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~----~~~f~~~-f~~ar~~--gl~~t~HAGE~~~~e~i~~ai~l~a~ 243 (269)
+.+.+..+++.|.+.+.+.+..+.-. +.... ...+.+. ...|++. .+|+.+|.--..+.+.+..|++.|-+
T Consensus 33 n~e~~~avi~AAee~~sPvIlq~s~~--~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~Gft 110 (321)
T PRK07084 33 NMEQLQAIIQACVETKSPVILQVSKG--ARKYANATLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSGFS 110 (321)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechh--HHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCC
Confidence 57889999999998887777666322 22211 2334443 3346666 69999999887788999999987632
Q ss_pred cccc-cccCC--------HHHHHHHHhCCCcee
Q 024296 244 RIGH-ACCFE--------EEEWRKLKSSKIPVR 267 (269)
Q Consensus 244 RIGH-G~~~~--------~~l~~~l~~~~I~lE 267 (269)
=+=- |-.+. -++.++....|+.+|
T Consensus 111 SVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVE 143 (321)
T PRK07084 111 SVMIDGSHLPYEENVALTKKVVEYAHQFDVTVE 143 (321)
T ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 1100 11121 147888888898887
No 312
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=32.50 E-value=44 Score=25.93 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=19.7
Q ss_pred cccccc---CCHHHHHHHHhCCCceee
Q 024296 245 IGHACC---FEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 245 IGHG~~---~~~~l~~~l~~~~I~lEi 268 (269)
||.|-. ++|++++++.++||.+|+
T Consensus 60 iGtG~~~~~~~~~~~~~l~~~gi~vev 86 (114)
T cd05125 60 IGTGRKSRPLSPELRKYFKKLGIAVEV 86 (114)
T ss_pred EccCCCCCcCCHHHHHHHHHcCCEEEE
Confidence 677753 478999999999999986
No 313
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=32.43 E-value=1.1e+02 Score=27.69 Aligned_cols=76 Identities=18% Similarity=0.144 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHhhCCC-ceEEEecC-CCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCChhHHHHHHhcCCCcccc
Q 024296 171 TTEAAMETVKLALEMRDL-GVVGIDLS-GNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRIGH 247 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~-~vvGidl~-G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l~a~RIGH 247 (269)
+|+++.+.++.. ..+ .=|+|+-+ |.- +.|--+| +.++..++. ++|+++|.|=..+.+.++.|+..|+.-|-=
T Consensus 154 ~pe~a~~Fv~~T---gvD~LAvaiGt~HG~Y-~~p~l~~-~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 228 (283)
T PRK07998 154 EPEKVKDFVERT---GCDMLAVSIGNVHGLE-DIPRIDI-PLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVNI 228 (283)
T ss_pred CHHHHHHHHHHh---CcCeeehhccccccCC-CCCCcCH-HHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEEE
Confidence 566665554422 222 23344444 322 2222233 455555554 999999999877889999999999988887
Q ss_pred cccC
Q 024296 248 ACCF 251 (269)
Q Consensus 248 G~~~ 251 (269)
|..+
T Consensus 229 ~Tel 232 (283)
T PRK07998 229 ASDL 232 (283)
T ss_pred CHHH
Confidence 7654
No 314
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=32.35 E-value=3.2e+02 Score=23.37 Aligned_cols=28 Identities=21% Similarity=0.579 Sum_probs=18.1
Q ss_pred CCceeeecCC--CCChh-HHHHHHhcCCCcc
Q 024296 218 GLQITLHCGE--IPNKE-EIQSMLDFLPQRI 245 (269)
Q Consensus 218 gl~~t~HAGE--~~~~e-~i~~ai~l~a~RI 245 (269)
|+++|+|-.= +.++. .+.+.+++|.+||
T Consensus 114 ~~~~tFHRAfD~~~d~~~al~~L~~lG~~rV 144 (201)
T PF03932_consen 114 GMPVTFHRAFDEVPDPEEALEQLIELGFDRV 144 (201)
T ss_dssp TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEE
T ss_pred CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEE
Confidence 9999999643 33443 4556667999999
No 315
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=32.24 E-value=2.7e+02 Score=24.75 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc---CCceeeecCCCCChhHH
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---GLQITLHCGEIPNKEEI 234 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~---gl~~t~HAGE~~~~e~i 234 (269)
.+.+...+.++...+..-++++-.+..|.-..-+.++...+++.+.+. .+++.+|+|..+..+.+
T Consensus 16 iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i 83 (285)
T TIGR00674 16 VDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAI 83 (285)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHH
Confidence 456666677776665433344444445533334557777777766653 48999999876544444
No 316
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=32.13 E-value=3.5e+02 Score=23.68 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCeEEEEecCC
Q 024296 79 QEVVEDFASENIVYLELRTTP 99 (269)
Q Consensus 79 ~~~~~~~~~dnV~Y~Elr~~p 99 (269)
.+.++.+++-|..++|+...+
T Consensus 19 ~e~l~~~~~~G~~~VEl~~~~ 39 (279)
T TIGR00542 19 LERLQLAKTCGFDFVEMSVDE 39 (279)
T ss_pred HHHHHHHHHcCCCEEEEecCC
Confidence 566778889999999997653
No 317
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=32.05 E-value=2.4e+02 Score=25.10 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCC--Ch-hHHHHHHhcCCCcc-cccc
Q 024296 205 TTFLPALKFAREQGLQITLHCGEIP--NK-EEIQSMLDFLPQRI-GHAC 249 (269)
Q Consensus 205 ~~f~~~f~~ar~~gl~~t~HAGE~~--~~-e~i~~ai~l~a~RI-GHG~ 249 (269)
+.-..+.+.| .|+++|+|-.=.. ++ +.+..++++|.+|| -||-
T Consensus 104 ~~~~~Li~~a--~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg 150 (248)
T PRK11572 104 PRMRKIMAAA--GPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQ 150 (248)
T ss_pred HHHHHHHHHh--cCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCC
Confidence 3344455544 4899999965433 33 34556677999998 3453
No 318
>PF09846 DUF2073: Uncharacterized protein conserved in archaea (DUF2073); InterPro: IPR012017 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.00 E-value=1.4e+02 Score=22.87 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=37.2
Q ss_pred EEEEeCCCCHHHHHHHHHHHHh-hCCCceEEEecCCCCCCC-ChhhHHHHHHH
Q 024296 163 LLSIDRRETTEAAMETVKLALE-MRDLGVVGIDLSGNPTKG-EWTTFLPALKF 213 (269)
Q Consensus 163 i~~~~R~~~~~~~~~~~~~a~~-~~~~~vvGidl~G~E~~~-~~~~f~~~f~~ 213 (269)
|+.+-++++|++-...++..+. ..++.|.||++-+.+... ...-|-.+|.+
T Consensus 22 IvVLE~GLtPeEe~~LIE~TM~eI~~d~F~GIEiesyp~~~~~~~f~~rl~gk 74 (104)
T PF09846_consen 22 IVVLEEGLTPEEESKLIEMTMTEIDPDEFSGIEIESYPSKEADKSFLGRLLGK 74 (104)
T ss_pred EEEEcCCCChHHHHHHHHHHHHhcCccccCceEEEecCcccccccHHHHHhCC
Confidence 7777889999988888888776 456889999998776654 22334455553
No 319
>PRK07360 FO synthase subunit 2; Reviewed
Probab=31.75 E-value=3.4e+02 Score=25.27 Aligned_cols=75 Identities=19% Similarity=0.229 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCC-CC-hhhHHHHHHHHHHcCCceeeec-------------CCCCChhHH
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTK-GE-WTTFLPALKFAREQGLQITLHC-------------GEIPNKEEI 234 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~-~~-~~~f~~~f~~ar~~gl~~t~HA-------------GE~~~~e~i 234 (269)
.++++..+.++.+.+. ++.-|-|+|.+.. .. .+.+.++++..|+.--.+.+|+ |.. ..+.+
T Consensus 91 ls~eeI~~~a~~a~~~---G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~-~~e~l 166 (371)
T PRK07360 91 LTIAEILEKAAEAVKR---GATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLS-YEEVL 166 (371)
T ss_pred CCHHHHHHHHHHHHhC---CCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCC-HHHHH
Confidence 4577666666665543 5666666655433 22 5668889999988544466665 542 23444
Q ss_pred HHHHhcCCCcccccc
Q 024296 235 QSMLDFLPQRIGHAC 249 (269)
Q Consensus 235 ~~ai~l~a~RIGHG~ 249 (269)
...-+.|.+|+ ||.
T Consensus 167 ~~LkeAGld~~-~~t 180 (371)
T PRK07360 167 KALKDAGLDSM-PGT 180 (371)
T ss_pred HHHHHcCCCcC-CCc
Confidence 45455799999 554
No 320
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=31.66 E-value=2.6e+02 Score=24.90 Aligned_cols=75 Identities=12% Similarity=0.233 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCC-ceeeecCCCCC---hhHHHHHHhcCCCc
Q 024296 169 RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL-QITLHCGEIPN---KEEIQSMLDFLPQR 244 (269)
Q Consensus 169 ~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl-~~t~HAGE~~~---~e~i~~ai~l~a~R 244 (269)
..+.++....++.+... ++-.|.+.|.|.--. .++.++.+.+++.|+ .+++-. .+ .+.+....+.|.++
T Consensus 39 ~ls~eei~~~i~~~~~~---gi~~I~~tGGEPll~-~~l~~iv~~l~~~g~~~v~i~T---NG~ll~~~~~~l~~~g~~~ 111 (302)
T TIGR02668 39 ELSPEEIERIVRVASEF---GVRKVKITGGEPLLR-KDLIEIIRRIKDYGIKDVSMTT---NGILLEKLAKKLKEAGLDR 111 (302)
T ss_pred cCCHHHHHHHHHHHHHc---CCCEEEEECcccccc-cCHHHHHHHHHhCCCceEEEEc---CchHHHHHHHHHHHCCCCE
Confidence 45677776666655443 466677888775332 457888888888887 665532 22 22223333468888
Q ss_pred cccccc
Q 024296 245 IGHACC 250 (269)
Q Consensus 245 IGHG~~ 250 (269)
|.-.+.
T Consensus 112 v~iSld 117 (302)
T TIGR02668 112 VNVSLD 117 (302)
T ss_pred EEEEec
Confidence 876654
No 321
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=31.59 E-value=4.9e+02 Score=25.20 Aligned_cols=95 Identities=12% Similarity=0.090 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeec-CCCC---ChhHH----HHHHhc
Q 024296 169 RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC-GEIP---NKEEI----QSMLDF 240 (269)
Q Consensus 169 ~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HA-GE~~---~~e~i----~~ai~l 240 (269)
+.+.+...+.++.|.+..-+.|.-+|-.. +. ....++.+.|++.|+.+.+.. -+.+ +++.+ .++.+.
T Consensus 92 ~~pddvv~~~v~~A~~~Gvd~irif~~ln-d~----~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~ 166 (448)
T PRK12331 92 NYADDVVESFVQKSVENGIDIIRIFDALN-DV----RNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEM 166 (448)
T ss_pred cCchhhHHHHHHHHHHCCCCEEEEEEecC-cH----HHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc
Confidence 34445566777777776444333333222 22 346678888999997654332 1211 23332 345557
Q ss_pred CCCcccccc---cCCH----HHHHHHHhC-CCceee
Q 024296 241 LPQRIGHAC---CFEE----EEWRKLKSS-KIPVRI 268 (269)
Q Consensus 241 ~a~RIGHG~---~~~~----~l~~~l~~~-~I~lEi 268 (269)
|++||.=.= .+.| ++++.++++ +++|++
T Consensus 167 Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~ 202 (448)
T PRK12331 167 GADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEV 202 (448)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 888865331 1245 466666654 466654
No 322
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=31.41 E-value=38 Score=36.05 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=21.3
Q ss_pred CCcchhccc-----cCCCCCHHHHHHHHHH
Q 024296 7 MPKVELHAH-----LNGSIRDSTLLELARV 31 (269)
Q Consensus 7 lPK~eLH~H-----L~Gs~~~~tl~~la~~ 31 (269)
|+.++||+| |+|+++++.+.+.|++
T Consensus 1 m~fv~LHvHS~ySlLDg~~~~~elv~~Ak~ 30 (973)
T PRK07135 1 MKLINLHTNTEYSFLSSTIKLDSLIKYAKE 30 (973)
T ss_pred CCccccccCccCcccccCCCHHHHHHHHHH
Confidence 456899999 4777999999999986
No 323
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=31.31 E-value=4.1e+02 Score=24.27 Aligned_cols=96 Identities=21% Similarity=0.273 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeec-CCCCChhHHHHHHhcCCCcccc
Q 024296 169 RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC-GEIPNKEEIQSMLDFLPQRIGH 247 (269)
Q Consensus 169 ~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HA-GE~~~~e~i~~ai~l~a~RIGH 247 (269)
..+.+...+.++.+.+. ++..|.+.|.|.--. ++|.++++.+++.|+.+++-- |=..+.+.+......|.++|.=
T Consensus 36 ~l~~e~~~~ii~~~~~~---g~~~v~~~GGEPll~-~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~i 111 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAEL---GVLQLHFSGGEPLAR-PDLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGLDHVQL 111 (358)
T ss_pred CCCHHHHHHHHHHHHhc---CCcEEEEeCcccccc-ccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCCCEEEE
Confidence 45677777777766543 456677788775433 468899999999998776642 2222334444444456666543
Q ss_pred cccC-CH-----------------HHHHHHHhCCCceee
Q 024296 248 ACCF-EE-----------------EEWRKLKSSKIPVRI 268 (269)
Q Consensus 248 G~~~-~~-----------------~l~~~l~~~~I~lEi 268 (269)
.+.. ++ +.++++++.++.+.|
T Consensus 112 Sldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v 150 (358)
T TIGR02109 112 SFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTL 150 (358)
T ss_pred eCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEE
Confidence 3221 11 245677777776654
No 324
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=31.22 E-value=2.4e+02 Score=21.57 Aligned_cols=80 Identities=24% Similarity=0.236 Sum_probs=46.9
Q ss_pred HHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCC-ceeeecCCCCChhHHHHHHhcCCCcccccccCCHHH
Q 024296 177 ETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL-QITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEE 255 (269)
Q Consensus 177 ~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl-~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~~~~l 255 (269)
+.++.+.+..++ ++++-..- ....+...++.+.+++.|. .+.+-+|=...++......++|.+..=|+-.-.++.
T Consensus 41 ~~~~~a~~~~~d-~V~iS~~~---~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~ 116 (122)
T cd02071 41 EIVEAAIQEDVD-VIGLSSLS---GGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEI 116 (122)
T ss_pred HHHHHHHHcCCC-EEEEcccc---hhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHH
Confidence 344445555554 77775442 1223445556777777766 566677655445555555568877776665555666
Q ss_pred HHHHH
Q 024296 256 WRKLK 260 (269)
Q Consensus 256 ~~~l~ 260 (269)
+.+|+
T Consensus 117 ~~~~~ 121 (122)
T cd02071 117 IDKIR 121 (122)
T ss_pred HHHHh
Confidence 66654
No 325
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=31.14 E-value=1.4e+02 Score=27.49 Aligned_cols=79 Identities=16% Similarity=0.094 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCC--CChhhHHHHHHHHHH-cCCceeeecCCCCChh---------------
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTK--GEWTTFLPALKFARE-QGLQITLHCGEIPNKE--------------- 232 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~--~~~~~f~~~f~~ar~-~gl~~t~HAGE~~~~e--------------- 232 (269)
+|+++.+.++.. .-+..=++|+-+-.-.+ +.|..=.+.++..++ -++|+++|.|=..+.+
T Consensus 156 dPeeA~~Fv~~T--gvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g~~~~~~ 233 (307)
T PRK05835 156 NPKEAEQFVKES--QVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDLKGS 233 (307)
T ss_pred CHHHHHHHHHhh--CCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhccccccc
Confidence 467666665532 11222445555533322 233332234444444 4999999998766665
Q ss_pred ------HHHHHHhcCCCcccccccC
Q 024296 233 ------EIQSMLDFLPQRIGHACCF 251 (269)
Q Consensus 233 ------~i~~ai~l~a~RIGHG~~~ 251 (269)
.++.|+.+|..-|--++.+
T Consensus 234 ~g~~~e~~~kai~~GI~KiNi~T~l 258 (307)
T PRK05835 234 KGVPFEFLQESVKGGINKVNTDTDL 258 (307)
T ss_pred cCCCHHHHHHHHHcCceEEEeChHH
Confidence 8899999999888888654
No 326
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=30.98 E-value=1.6e+02 Score=26.74 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=33.2
Q ss_pred HHHHHHH-cCCceeeecCCCCChhHHHHHHhcCCCcccccccC
Q 024296 210 ALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF 251 (269)
Q Consensus 210 ~f~~ar~-~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~ 251 (269)
.++..++ -++|+++|.|=..+.+.++.++..|..-|-=++.+
T Consensus 197 ~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l 239 (288)
T TIGR00167 197 RLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTEL 239 (288)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHH
Confidence 4444444 49999999998778889999999998888877654
No 327
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=30.94 E-value=1.6e+02 Score=23.73 Aligned_cols=56 Identities=18% Similarity=0.110 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCCh--hhHHHHHHHHHHc-CCc-eeeecCC
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEW--TTFLPALKFAREQ-GLQ-ITLHCGE 227 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~--~~f~~~f~~ar~~-gl~-~t~HAGE 227 (269)
.+.+...++++.+.... .+-||-+.|.|.--.+ ..+.++++.+++. |++ +....|=
T Consensus 46 ~~~~~~~~i~~~l~~~~--~~~gVt~sGGEPllq~~~~~l~~ll~~~k~~~~~~~~~~~tG~ 105 (154)
T TIGR02491 46 FTEALEKEIIRDLNDNP--LIDGLTLSGGDPLYPRNVEELIELVKKIKAEFPEKDIWLWTGY 105 (154)
T ss_pred CCHHHHHHHHHHHHhcC--CcCeEEEeChhhCCCCCHHHHHHHHHHHHHhCCCCCEEEeeCc
Confidence 44555666666655443 3668999998876543 6788889999876 666 4444443
No 328
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=30.89 E-value=1.1e+02 Score=27.14 Aligned_cols=56 Identities=21% Similarity=0.163 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeee
Q 024296 169 RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (269)
Q Consensus 169 ~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~H 224 (269)
..+.+...+.++....+.....-||-+.|.|.--.+....++++.+++.|+++++-
T Consensus 105 ~~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~ 160 (295)
T TIGR02494 105 EMTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQPEFALALLQACHERGIHTAVE 160 (295)
T ss_pred CCcHHHHHHHHHHHHHhcccCCCcEEeeCcchhchHHHHHHHHHHHHHcCCcEeee
Confidence 34566666665544433322234677888775433333357889999999887774
No 329
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=30.88 E-value=93 Score=27.64 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=52.0
Q ss_pred ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhH---HH---HHHh--cC--CCccccccc--C--C--
Q 024296 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEE---IQ---SMLD--FL--PQRIGHACC--F--E-- 252 (269)
Q Consensus 189 ~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~---i~---~ai~--l~--a~RIGHG~~--~--~-- 252 (269)
.+-||-.+|.|.--.++-..++++.||+.||+++++--=...++. +. |++. ++ .++. |.-- . .
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~~D~v~~DlK~~~~~~-y~~~tg~~~~~v 161 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPLLDAVLLDLKAFDDEL-YRKLTGADNEPV 161 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHhhcCeEEEeeccCChHH-HHHHhCCCcHHH
Confidence 567888889987655566778999999999999999533333332 22 2222 22 2332 4421 1 1
Q ss_pred HHHHHHHHhCCCceeeC
Q 024296 253 EEEWRKLKSSKIPVRIS 269 (269)
Q Consensus 253 ~~l~~~l~~~~I~lEic 269 (269)
-+.++++++.++++|++
T Consensus 162 l~~~~~l~~~g~~ve~r 178 (260)
T COG1180 162 LENLELLADLGVHVEIR 178 (260)
T ss_pred HHHHHHHHcCCCeEEEE
Confidence 24788999999999974
No 330
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=30.69 E-value=4.3e+02 Score=24.34 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=27.7
Q ss_pred CceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCC
Q 024296 188 LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE 227 (269)
Q Consensus 188 ~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE 227 (269)
.++++|-..+.. ..+...+.++|+.+++.|.++.+|+ |
T Consensus 104 ~G~~~~k~~~~~-~~~~~~l~~~~~~~~~~g~~v~~H~-E 141 (374)
T cd01317 104 AGAVGFSDDGKP-IQDAELLRRALEYAAMLDLPIIVHP-E 141 (374)
T ss_pred CCcEEEEcCCcC-CCCHHHHHHHHHHHHhcCCeEEEec-C
Confidence 468888643221 1234568889999999999999999 5
No 331
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=30.46 E-value=4.1e+02 Score=24.00 Aligned_cols=88 Identities=19% Similarity=0.251 Sum_probs=56.2
Q ss_pred HHHHHHHhhCCCceEEEecCCCCCCC-----Ch-hh---HHHHHHHHHHc-CCceeeecCCCCChhHHHHHHhcCCCccc
Q 024296 177 ETVKLALEMRDLGVVGIDLSGNPTKG-----EW-TT---FLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRIG 246 (269)
Q Consensus 177 ~~~~~a~~~~~~~vvGidl~G~E~~~-----~~-~~---f~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l~a~RIG 246 (269)
..++.|.++...|---||+.|.-... ++ ++ ..|+.+.+++. ++++.+-. ..++-+.+|++.|++=|-
T Consensus 39 ~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT---~~~~va~~AL~~GadiIN 115 (282)
T PRK11613 39 DAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWISVDT---SKPEVIRESAKAGAHIIN 115 (282)
T ss_pred HHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEC---CCHHHHHHHHHcCCCEEE
Confidence 34445555555677777776644321 11 23 66778887754 77776643 568888899999988662
Q ss_pred c--cccCCHHHHHHHHhCCCceee
Q 024296 247 H--ACCFEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 247 H--G~~~~~~l~~~l~~~~I~lEi 268 (269)
- |.. +|+.++.+++.+.++=+
T Consensus 116 DI~g~~-d~~~~~~~a~~~~~vVl 138 (282)
T PRK11613 116 DIRSLS-EPGALEAAAETGLPVCL 138 (282)
T ss_pred ECCCCC-CHHHHHHHHHcCCCEEE
Confidence 1 332 67878888888776643
No 332
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=30.24 E-value=3.6e+02 Score=23.21 Aligned_cols=87 Identities=13% Similarity=0.166 Sum_probs=47.6
Q ss_pred CceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHH
Q 024296 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQS 236 (269)
Q Consensus 157 ~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ 236 (269)
++.++.|+-... ++.++.....+++.+..-+.| =.. .|....+....-...++++-...+++.+=-|=. +.+...+
T Consensus 117 g~~lKvIlE~~~-L~~~ei~~a~~ia~eaGADfv-KTs-TGf~~~gat~~dv~~m~~~v~~~v~IKaaGGir-t~~~a~~ 192 (211)
T TIGR00126 117 GVLLKVIIETGL-LTDEEIRKACEICIDAGADFV-KTS-TGFGAGGATVEDVRLMRNTVGDTIGVKASGGVR-TAEDAIA 192 (211)
T ss_pred CCeEEEEEecCC-CCHHHHHHHHHHHHHhCCCEE-EeC-CCCCCCCCCHHHHHHHHHHhccCCeEEEeCCCC-CHHHHHH
Confidence 566777776554 555655566666666543322 111 011111111223344444434456666655543 5667777
Q ss_pred HHhcCCCcccc
Q 024296 237 MLDFLPQRIGH 247 (269)
Q Consensus 237 ai~l~a~RIGH 247 (269)
.+++|++|||=
T Consensus 193 ~i~aGa~riGt 203 (211)
T TIGR00126 193 MIEAGASRIGA 203 (211)
T ss_pred HHHHhhHHhCc
Confidence 88889999985
No 333
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=30.17 E-value=2.9e+02 Score=24.66 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=49.0
Q ss_pred CceEEEEEEEeC--CCCHHHHHHHHHHHHh-hCCCceEEEecCCCCCCCChhhHHHHHHHHHHc---CCceeeecCCCCC
Q 024296 157 KIYVRLLLSIDR--RETTEAAMETVKLALE-MRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---GLQITLHCGEIPN 230 (269)
Q Consensus 157 ~i~~rli~~~~R--~~~~~~~~~~~~~a~~-~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~---gl~~t~HAGE~~~ 230 (269)
|+-.-++.-++. ..+.+...+.++.... ..-++++-.+..|.-..-+.++...+.+.+.+. .+++.+++|..+.
T Consensus 6 Gv~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t 85 (293)
T PRK04147 6 GVYAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNT 85 (293)
T ss_pred ceeeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCH
Confidence 444444433333 3356666677776665 322334433333332333556777777766553 4999999998765
Q ss_pred hhHHH---HHHhcCCCcc
Q 024296 231 KEEIQ---SMLDFLPQRI 245 (269)
Q Consensus 231 ~e~i~---~ai~l~a~RI 245 (269)
.+.+. .|.++|++-+
T Consensus 86 ~~ai~~a~~a~~~Gad~v 103 (293)
T PRK04147 86 AEAQELAKYATELGYDAI 103 (293)
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 55553 3444565543
No 334
>PRK10425 DNase TatD; Provisional
Probab=30.01 E-value=3.9e+02 Score=23.57 Aligned_cols=77 Identities=22% Similarity=0.337 Sum_probs=49.7
Q ss_pred CceEEEecCCCCCC---CCh----hhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHh-cC---CCcccccccCCHHHH
Q 024296 188 LGVVGIDLSGNPTK---GEW----TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FL---PQRIGHACCFEEEEW 256 (269)
Q Consensus 188 ~~vvGidl~G~E~~---~~~----~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~-l~---a~RIGHG~~~~~~l~ 256 (269)
+.++||+=.|-+.. .+. .-|...++.|++.++|+.+|.-+.. +.+.+.+. .. +.-|=|++.-+++.+
T Consensus 84 ~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~--~~~l~iL~~~~~~~~~~i~H~fsG~~~~~ 161 (258)
T PRK10425 84 PEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRDAH--ERFMALLEPWLDKLPGAVLHCFTGTREEM 161 (258)
T ss_pred CCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCch--HHHHHHHHHhccCCCCeEEEecCCCHHHH
Confidence 34666665553321 111 3377778899999999999997533 55566555 22 245777777778878
Q ss_pred HHHHhCCCce
Q 024296 257 RKLKSSKIPV 266 (269)
Q Consensus 257 ~~l~~~~I~l 266 (269)
+.+.+.|.-+
T Consensus 162 ~~~l~~G~~~ 171 (258)
T PRK10425 162 QACLARGLYI 171 (258)
T ss_pred HHHHHCCCEE
Confidence 7777777544
No 335
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.96 E-value=4.4e+02 Score=24.21 Aligned_cols=70 Identities=13% Similarity=0.028 Sum_probs=38.3
Q ss_pred eEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHH-HcCCceeeecCCCC-ChhHHHH
Q 024296 159 YVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAR-EQGLQITLHCGEIP-NKEEIQS 236 (269)
Q Consensus 159 ~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar-~~gl~~t~HAGE~~-~~e~i~~ 236 (269)
.+.+.+..|...+++++.+.++...+ +++.--|..-++.++.. ++..+ +.++++. +||.. +++.+..
T Consensus 176 ~~~l~vDaN~~~~~~~A~~~~~~l~~--------~~i~~iEeP~~~~d~~~-~~~L~~~~~~pia--~dEs~~~~~~~~~ 244 (352)
T cd03325 176 DIDIGVDFHGRVSKPMAKDLAKELEP--------YRLLFIEEPVLPENVEA-LAEIAARTTIPIA--TGERLFSRWDFKE 244 (352)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc--------cCCcEEECCCCccCHHH-HHHHHHhCCCCEE--ecccccCHHHHHH
Confidence 56788888988888877666654332 22333355444444333 33333 3466654 37754 4555554
Q ss_pred HHh
Q 024296 237 MLD 239 (269)
Q Consensus 237 ai~ 239 (269)
++.
T Consensus 245 ~~~ 247 (352)
T cd03325 245 LLE 247 (352)
T ss_pred HHH
Confidence 443
No 336
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.85 E-value=4.7e+02 Score=24.53 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=36.6
Q ss_pred CceEEEEEEEeCCCCHHHHHHHHHHHHhhCCC-ceEEEecCC-CCCCCChhhHHHHHH-HHHHcCCceeee
Q 024296 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDL-GVVGIDLSG-NPTKGEWTTFLPALK-FAREQGLQITLH 224 (269)
Q Consensus 157 ~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~-~vvGidl~G-~E~~~~~~~f~~~f~-~ar~~gl~~t~H 224 (269)
.+.+++++.-.-..+.+++.++++++..+.-. .++-+.-.+ .....|..+.+..|+ .+++.|+.+|+-
T Consensus 278 ~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR 348 (368)
T PRK14456 278 PVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLLDAGLQVTVR 348 (368)
T ss_pred eEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEee
Confidence 45566555544456777888888888654211 122222222 222233344444444 567789999884
No 337
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=29.77 E-value=2.8e+02 Score=25.24 Aligned_cols=127 Identities=18% Similarity=0.242 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHhccCCCcc--chhhHHHHhhcCCCHHHHHHHhHHH-----HHhhCCHHHHHHHHHHHHHHHHhcCCe
Q 024296 19 SIRDSTLLELARVLGEKGVIV--FSDVEHVIMKSDRSLHEVFKLFDLI-----HVLTTDHATVTRITQEVVEDFASENIV 91 (269)
Q Consensus 19 s~~~~tl~~la~~~~~~g~~~--~~~~~~~~~~~~~~l~~f~~~f~~~-----~~l~~~~~~~~~~~~~~~~~~~~dnV~ 91 (269)
.++.+.+..+++.....|+.. +..-|-+. ..++.++++..... -.+.++-. ++.+.++++.+.|+.
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tGGEPll---r~dl~~li~~i~~~~~l~~i~itTNG~----ll~~~~~~L~~aGl~ 116 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTGGEPLV---RRGCDQLVARLGKLPGLEELSLTTNGS----RLARFAAELADAGLK 116 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECcCCCc---cccHHHHHHHHHhCCCCceEEEEeChh----HHHHHHHHHHHcCCC
Confidence 478888888776543344321 11111111 12344444433211 12233321 223577888889999
Q ss_pred EEEEecC---CCCcc--cCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc-eEEEEEE
Q 024296 92 YLELRTT---PKRNE--SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI-YVRLLLS 165 (269)
Q Consensus 92 Y~Elr~~---p~~~~--~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~rli~~ 165 (269)
++=+... |..+. .++-+ ++.++++++.+.+ .|+ .+++-..
T Consensus 117 ~v~ISlDs~~~e~~~~i~~~g~----~~~vl~~i~~~~~------------------------------~Gi~~v~in~v 162 (329)
T PRK13361 117 RLNISLDTLRPELFAALTRNGR----LERVIAGIDAAKA------------------------------AGFERIKLNAV 162 (329)
T ss_pred eEEEEeccCCHHHhhhhcCCCC----HHHHHHHHHHHHH------------------------------cCCCceEEEEE
Confidence 8888764 22221 11223 4555666665432 244 4555455
Q ss_pred EeCCCCHHHHHHHHHHHHhhC
Q 024296 166 IDRRETTEAAMETVKLALEMR 186 (269)
Q Consensus 166 ~~R~~~~~~~~~~~~~a~~~~ 186 (269)
+.+..+.++..+.++++.+..
T Consensus 163 ~~~g~N~~ei~~~~~~~~~~g 183 (329)
T PRK13361 163 ILRGQNDDEVLDLVEFCRERG 183 (329)
T ss_pred EECCCCHHHHHHHHHHHHhcC
Confidence 667778888888999888754
No 338
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=29.33 E-value=4.6e+02 Score=24.19 Aligned_cols=161 Identities=16% Similarity=0.079 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHH---HHHhcCCeEEEEecC----------CCCc---ccCCCCHHHHHHHHHHHHHhhhhcccccccc
Q 024296 70 DHATVTRITQEVVE---DFASENIVYLELRTT----------PKRN---ESIGMSKRSYMDAVVEGLRAVSAVDVDFASR 133 (269)
Q Consensus 70 ~~~~~~~~~~~~~~---~~~~dnV~Y~Elr~~----------p~~~---~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~ 133 (269)
|.+++++++.++.+ .+.+-|.--+||-.. |..+ ..-|=|.+.-++-+.+.++..++
T Consensus 133 t~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~-------- 204 (337)
T PRK13523 133 TKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKE-------- 204 (337)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHH--------
Confidence 35667777666655 445679999999755 5442 12233566555555444444432
Q ss_pred ccccccccccccccccccCCCCCCceEEEEE--EEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCC--C---CCChhh
Q 024296 134 SIDVRRPVNTKNMNDACNGTRGKKIYVRLLL--SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNP--T---KGEWTT 206 (269)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~--~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E--~---~~~~~~ 206 (269)
.-.+.+.+|+-. ......++++..+.++...+ .++--|++++.- . ...+..
T Consensus 205 -------------------~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~---~gvD~i~vs~g~~~~~~~~~~~~~ 262 (337)
T PRK13523 205 -------------------VWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKE---QGVDLIDVSSGAVVPARIDVYPGY 262 (337)
T ss_pred -------------------hcCCCeEEEecccccCCCCCCHHHHHHHHHHHHH---cCCCEEEeCCCCCCCCCCCCCccc
Confidence 113355566543 12223455555555544433 245555565431 1 111111
Q ss_pred HHHHHHHHHHc-CCceeeecCCCCChhHHHHHHhc-CCCccccccc--CCHHHHHHHHh
Q 024296 207 FLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDF-LPQRIGHACC--FEEEEWRKLKS 261 (269)
Q Consensus 207 f~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l-~a~RIGHG~~--~~~~l~~~l~~ 261 (269)
+.+..+..|+. ++|+ +-.|-..+++...++|.- ++|=|+=|-. .+|++.+.+++
T Consensus 263 ~~~~~~~ik~~~~ipV-i~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~ 320 (337)
T PRK13523 263 QVPFAEHIREHANIAT-GAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAK 320 (337)
T ss_pred cHHHHHHHHhhcCCcE-EEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHH
Confidence 34444455554 6664 456777788888888885 4888877754 48987766654
No 339
>PRK08323 phenylhydantoinase; Validated
Probab=29.27 E-value=2.2e+02 Score=27.01 Aligned_cols=26 Identities=31% Similarity=0.211 Sum_probs=21.6
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCCC
Q 024296 202 GEWTTFLPALKFAREQGLQITLHCGEI 228 (269)
Q Consensus 202 ~~~~~f~~~f~~ar~~gl~~t~HAGE~ 228 (269)
.+...+..+++.|++.|+++.+|+ |.
T Consensus 157 ~s~~~l~~~~~~a~~~g~~v~~H~-e~ 182 (459)
T PRK08323 157 LDDDELLRALQRAAELGALPMVHA-EN 182 (459)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEc-CC
Confidence 345678889999999999999997 63
No 340
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=29.06 E-value=4e+02 Score=24.59 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=33.5
Q ss_pred HHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcc--------ccccc-----CCHHHHHHHH
Q 024296 211 LKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI--------GHACC-----FEEEEWRKLK 260 (269)
Q Consensus 211 f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RI--------GHG~~-----~~~~l~~~l~ 260 (269)
++.+++.|+++..|+ .++.....+++.|+|.| ||.=. +.|.+++.+.
T Consensus 96 ~~~lk~~Gi~v~~~v---~s~~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~ 155 (320)
T cd04743 96 ARALEAIGISTYLHV---PSPGLLKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALL 155 (320)
T ss_pred HHHHHHCCCEEEEEe---CCHHHHHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHH
Confidence 578888999999888 45666677777888776 88421 2466666664
No 341
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=28.89 E-value=4.5e+02 Score=25.16 Aligned_cols=89 Identities=7% Similarity=-0.011 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEE---EEecCCCCcccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 024296 69 TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (269)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~dnV~Y~---Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (269)
-+++.+.+++++ ++.-||-++ |.-.++.. .++++.+.++.++++++.+
T Consensus 144 lsp~~~a~~~y~----~~~GGvD~iKDDE~l~~q~~-----~p~~~Rv~~~~~a~~~a~~-------------------- 194 (412)
T cd08213 144 LSPEEHAEVAYE----ALVGGVDLVKDDENLTSQPF-----NRFEERAKESLKARDKAEA-------------------- 194 (412)
T ss_pred CCHHHHHHHHHH----HHhcCCcccccCccCCCCCC-----CCHHHHHHHHHHHHHHHHH--------------------
Confidence 345566555554 455565555 55444443 4678889999999998765
Q ss_pred ccccccCCCCCCceEEEEEEEeCCCCHHHHHHHHHHHHhhCCC-ceEEEecCC
Q 024296 146 MNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDL-GVVGIDLSG 197 (269)
Q Consensus 146 ~~~~~~~~~~~~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~-~vvGidl~G 197 (269)
++|-. -++.+|=+-+.++..+..+.+.+...+ .++.+..+|
T Consensus 195 ---------eTG~~--~~y~~NiT~~~~em~~ra~~a~e~G~~~~mv~~~~~G 236 (412)
T cd08213 195 ---------ETGER--KAYLANITAPVREMERRAELVADLGGKYVMIDVVVAG 236 (412)
T ss_pred ---------hhCCc--ceEEEEecCCHHHHHHHHHHHHHhCCCeEEeeccccC
Confidence 22322 244455455678888888888775432 233443344
No 342
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=28.83 E-value=1.4e+02 Score=26.38 Aligned_cols=63 Identities=8% Similarity=0.051 Sum_probs=40.7
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcc--cccccCCHHHHHHHHhCCCceee
Q 024296 203 EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI--GHACCFEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RI--GHG~~~~~~l~~~l~~~~I~lEi 268 (269)
+.+.|.++++.|++.|+.+..=. .+.+++.-+.++++..+ +-|-..+..+++.+++.|.|+=+
T Consensus 54 ~~e~~~~L~~~~~~~gi~f~stp---fd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIl 118 (241)
T PF03102_consen 54 SEEQHKELFEYCKELGIDFFSTP---FDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVIL 118 (241)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEEE----SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEE
T ss_pred CHHHHHHHHHHHHHcCCEEEECC---CCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEE
Confidence 45779999999999999887654 34566666666776654 44444467799999999988744
No 343
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=28.69 E-value=1.3e+02 Score=27.22 Aligned_cols=79 Identities=23% Similarity=0.126 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecC-CCCCC-CChhhHHHHHHHHHH-c-CCceeeecCCCCChhHHHHHHhcCCCccc
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLS-GNPTK-GEWTTFLPALKFARE-Q-GLQITLHCGEIPNKEEIQSMLDFLPQRIG 246 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~-G~E~~-~~~~~f~~~f~~ar~-~-gl~~t~HAGE~~~~e~i~~ai~l~a~RIG 246 (269)
+|+++.+.++..- -+..=|+|+-+ |.... ..|..=.+.++..++ . ++|+++|.|=..+.+.++.++..|..-|-
T Consensus 156 dP~~a~~Fv~~Tg--vD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiN 233 (287)
T PF01116_consen 156 DPEEAKEFVEETG--VDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKIN 233 (287)
T ss_dssp SHHHHHHHHHHHT--TSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEEE
T ss_pred CHHHHHHHHHHhC--CCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEEE
Confidence 5777766655331 12234566555 33332 144433344454444 4 99999999988888999999999887776
Q ss_pred ccccC
Q 024296 247 HACCF 251 (269)
Q Consensus 247 HG~~~ 251 (269)
=|+.+
T Consensus 234 i~T~~ 238 (287)
T PF01116_consen 234 IGTEL 238 (287)
T ss_dssp ESHHH
T ss_pred EehHH
Confidence 66543
No 344
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=28.52 E-value=1.8e+02 Score=27.31 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=34.4
Q ss_pred CCceeeecCCCCChhHHHHHHhcCCCcccccccCC----HHHHHHHHh
Q 024296 218 GLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFE----EEEWRKLKS 261 (269)
Q Consensus 218 gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~~----~~l~~~l~~ 261 (269)
++|+++|.|=-.+.+.++.|+.+|..-|-=++.+. ..+.+.+.+
T Consensus 249 ~vPLVLHGgSGipde~i~~ai~~GI~KINi~T~l~~a~~~~~~~~~~~ 296 (350)
T PRK09197 249 PFDFVFHGGSGSTLEEIREAVSYGVVKMNIDTDTQWAFWRGVLDYYFK 296 (350)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHCCCeeEEeCcHHHHHHHHHHHHHHHh
Confidence 69999999987788999999999999888887552 334555544
No 345
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=28.48 E-value=1.1e+02 Score=26.49 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeec-CC
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC-GE 227 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HA-GE 227 (269)
.++++..+.+.....+.....-||.++|.|.--.+....++++.+++.|+++++.- |-
T Consensus 51 lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~ 109 (246)
T PRK11145 51 VTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGF 109 (246)
T ss_pred cCHHHHHHHHHHhHHHHhcCCCeEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 45665544444332221111236667887754333334578899999999988763 43
No 346
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.23 E-value=3.1e+02 Score=25.61 Aligned_cols=96 Identities=9% Similarity=-0.020 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCC-ChhhHHHHHHHHHH-c-CCceeeecCCCCChhHHHHHHhcCCCccc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKG-EWTTFLPALKFARE-Q-GLQITLHCGEIPNKEEIQSMLDFLPQRIG 246 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~-~~~~f~~~f~~ar~-~-gl~~t~HAGE~~~~e~i~~ai~l~a~RIG 246 (269)
.+.+.+..+++.|.+.+.+.+..+.- .+... +...+..+.+.+.+ . .+|+.+|.--..+.+.+..|+++|-+=+=
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~s~--~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM 103 (347)
T PRK09196 26 NNLEQVQAIMEAADETDSPVILQASA--GARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVM 103 (347)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCc--cHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 35888999999999888776665522 22222 23446666665544 4 49999999887788999999987633210
Q ss_pred c-cccC---------------CHHHHHHHHhCCCcee
Q 024296 247 H-ACCF---------------EEEEWRKLKSSKIPVR 267 (269)
Q Consensus 247 H-G~~~---------------~~~l~~~l~~~~I~lE 267 (269)
- |-.+ ..+++++....||.+|
T Consensus 104 iDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VE 140 (347)
T PRK09196 104 MDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVE 140 (347)
T ss_pred ecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 0 1111 1247888888899888
No 347
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=27.93 E-value=4.4e+02 Score=23.52 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=33.2
Q ss_pred HHHHHHHHHHc-CCceeeecCCCCChhHHHHHHhcCCCcccccccC--CHHHHHHH
Q 024296 207 FLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKL 259 (269)
Q Consensus 207 f~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~~~l~~~l 259 (269)
..+....+++. ++++.. .|-..+++.+.+++..|++=++=|..+ +|.+.+.+
T Consensus 222 ~l~~v~~i~~~~~ipvi~-~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i 276 (301)
T PRK07259 222 ALRMVYQVYQAVDIPIIG-MGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKI 276 (301)
T ss_pred cHHHHHHHHHhCCCCEEE-ECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHH
Confidence 34444455554 788654 666678899999998898766655432 66544333
No 348
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=27.44 E-value=1.9e+02 Score=29.01 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=50.0
Q ss_pred CceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccccC-------CHHHHHHHH
Q 024296 188 LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF-------EEEEWRKLK 260 (269)
Q Consensus 188 ~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~-------~~~l~~~l~ 260 (269)
.+++||-+.++- ..++..+..+++.|++.|+++.+|+.-....--+.+.+..-..|-=|-++. .|++++...
T Consensus 218 aGA~GfKi~~d~-g~t~~~i~~aL~~A~~~gv~V~iHadtlne~g~~E~t~aa~~gr~iH~~H~egaggghapd~~~~~~ 296 (573)
T PRK13206 218 GGAGGFKLHEDW-GSTPAAIDACLRVADAAGVQVALHSDTLNEAGFVEDTLAAIAGRSIHAYHTEGAGGGHAPDIITVAS 296 (573)
T ss_pred CCCcEEeecCcc-CCCHHHHHHHHHHHHHhCCEEEEECCCccccchhhHHHHHhcCCeEEEEeccCCCcCcccHHHHhcC
Confidence 478999877432 345678999999999999999999965432211222333222465666553 388888777
Q ss_pred hCCC
Q 024296 261 SSKI 264 (269)
Q Consensus 261 ~~~I 264 (269)
+.+|
T Consensus 297 ~~n~ 300 (573)
T PRK13206 297 HPNV 300 (573)
T ss_pred CCCC
Confidence 6665
No 349
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=27.33 E-value=5.2e+02 Score=24.16 Aligned_cols=99 Identities=8% Similarity=0.133 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCC-CCC-------------hhhHHHHHH-HHHHcCCceeeecCCCCC----
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPT-KGE-------------WTTFLPALK-FAREQGLQITLHCGEIPN---- 230 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~-~~~-------------~~~f~~~f~-~ar~~gl~~t~HAGE~~~---- 230 (269)
.+.+.+..+++.|.+.+++.+..+.-.+... ... ...+.++.+ .|++.++|+.+|.--..+
T Consensus 24 ~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~~~ 103 (345)
T cd00946 24 TSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVLHTDHCAKKLLP 103 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCccch
Confidence 3578899999999998887776653322211 110 014556555 455679999999877666
Q ss_pred -hhHHHHHHh-cCCCcccccccC--------C--------HHHHHHHHhCCCceee
Q 024296 231 -KEEIQSMLD-FLPQRIGHACCF--------E--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 231 -~e~i~~ai~-l~a~RIGHG~~~--------~--------~~l~~~l~~~~I~lEi 268 (269)
.+.+.+|+. .=..=+..|+.. . .+++++....+|.+|.
T Consensus 104 ~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVEa 159 (345)
T cd00946 104 WFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLEM 159 (345)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 455555552 111122334321 1 1378888899999984
No 350
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.10 E-value=3.7e+02 Score=22.41 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=57.9
Q ss_pred EEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCC
Q 024296 163 LLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP 242 (269)
Q Consensus 163 i~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a 242 (269)
++-+.|..+++.+.+.++.+.+. ++.-+-+--. ... -.+.++.+++..=.+..++|=....+.+..|++.|+
T Consensus 14 ~~~v~r~~~~~~~~~~~~~~~~~---Gv~~vqlr~k--~~~---~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gA 85 (187)
T PRK07455 14 AIAVIRAPDLELGLQMAEAVAAG---GMRLIEITWN--SDQ---PAELISQLREKLPECIIGTGTILTLEDLEEAIAAGA 85 (187)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHC---CCCEEEEeCC--CCC---HHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCC
Confidence 55667999999999888877753 4555544311 112 234455555432123355665566788888999987
Q ss_pred CcccccccCCHHHHHHHHhCCCc
Q 024296 243 QRIGHACCFEEEEWRKLKSSKIP 265 (269)
Q Consensus 243 ~RIGHG~~~~~~l~~~l~~~~I~ 265 (269)
+=|- --+.++++++..+.++++
T Consensus 86 dgv~-~p~~~~~~~~~~~~~~~~ 107 (187)
T PRK07455 86 QFCF-TPHVDPELIEAAVAQDIP 107 (187)
T ss_pred CEEE-CCCCCHHHHHHHHHcCCC
Confidence 5331 114578888888887775
No 351
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=27.03 E-value=5.1e+02 Score=24.83 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEE---EEecCCCCcccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 024296 69 TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (269)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~dnV~Y~---Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (269)
-+++.+.+++|++ +.-||-++ |...++.. .++++.+.++.++++++.+
T Consensus 145 lsp~~~a~~~y~~----~~GGiD~IKDDE~l~~q~~-----~p~~eRv~~~~~a~~~a~~-------------------- 195 (414)
T cd08206 145 LSPKEYARVVYEA----LRGGLDFVKDDENQNSQPF-----MRFEDRILFVAEAMDKAEA-------------------- 195 (414)
T ss_pred CCHHHHHHHHHHH----HhcCCcccccCccCCCCCC-----CcHHHHHHHHHHHHHHHHH--------------------
Confidence 3466666665554 55555555 65555544 3678889999999998765
Q ss_pred ccccccCCCCCCceEEEEEEEeCCCC-HHHHHHHHHHHHhhCCC-ceEEEecCC
Q 024296 146 MNDACNGTRGKKIYVRLLLSIDRRET-TEAAMETVKLALEMRDL-GVVGIDLSG 197 (269)
Q Consensus 146 ~~~~~~~~~~~~i~~rli~~~~R~~~-~~~~~~~~~~a~~~~~~-~vvGidl~G 197 (269)
++|- +-++.+|=+-+ +++..+..+.+.+.... .++.+..+|
T Consensus 196 ---------eTG~--~~~y~~NiT~~~~~em~~ra~~~~~~G~~~~mv~~~~~G 238 (414)
T cd08206 196 ---------ETGE--AKGHYLNITADTPEEMIKRAEFAKELGSVIVMVDGVTAG 238 (414)
T ss_pred ---------hhCC--cceEEeccCCCcHHHHHHHHHHHHHhCCcEEEEeeeccc
Confidence 2222 23455555555 77778888877765432 244444444
No 352
>PRK06801 hypothetical protein; Provisional
Probab=26.85 E-value=1.9e+02 Score=26.21 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHH-cCCceeeecCCCCChhHHHHHHhcCCCcccccccC
Q 024296 205 TTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF 251 (269)
Q Consensus 205 ~~f~~~f~~ar~-~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~ 251 (269)
..|- .++..++ .++|+++|.|=..+.+++..++..|+..|-=+..+
T Consensus 190 l~~e-~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~~ 236 (286)
T PRK06801 190 LDFA-RLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIHKINFYTGM 236 (286)
T ss_pred CCHH-HHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEehhHH
Confidence 3443 3444443 48999999998778899999999999988777654
No 353
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=26.83 E-value=2.5e+02 Score=28.17 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=49.6
Q ss_pred CceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCC---hhHHHHHHhcCCCcccccccC-------CHHHHH
Q 024296 188 LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPN---KEEIQSMLDFLPQRIGHACCF-------EEEEWR 257 (269)
Q Consensus 188 ~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~---~e~i~~ai~l~a~RIGHG~~~-------~~~l~~ 257 (269)
.+++||-+..+- ...+..+..+++.|++.|+++.+|+.-... .|...+|+. .|-=|-+++ .|+.++
T Consensus 212 aGA~GfKi~ed~-g~t~~~i~~aL~~A~~~dv~VaiHadtlne~g~~E~t~~a~~---gr~iH~~H~egaggghapd~l~ 287 (569)
T PRK13308 212 AGACGLKIHEDW-GAMPAAIDTCLEVADEYDFQVQLHTDTLNESGFVEDTLAAIG---GRTIHMYHTEGAGGGHAPDIIR 287 (569)
T ss_pred CCCCEEeecCCC-CCCHHHHHHHHHHHHhcCCEEEEeCCCcCcchHHHHHHHHhc---CCeEEEEeccCCccCchhHHHH
Confidence 468888766432 235677889999999999999999976442 244444443 355555543 388888
Q ss_pred HHHhCCC
Q 024296 258 KLKSSKI 264 (269)
Q Consensus 258 ~l~~~~I 264 (269)
.+.+.+|
T Consensus 288 ~~~~~n~ 294 (569)
T PRK13308 288 VVGEPHC 294 (569)
T ss_pred HhCCCCc
Confidence 8877765
No 354
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=26.78 E-value=5.8e+02 Score=24.56 Aligned_cols=88 Identities=8% Similarity=-0.018 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEE---EEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccc
Q 024296 70 DHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM 146 (269)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~dnV~Y~---Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (269)
+++.+.+++|+ ++.-||-++ |.-.++.. .++++-+..+.+++++++++
T Consensus 174 sp~~~a~~~y~----~~~GGvD~IKDDE~l~~q~f-----~p~~eRv~~~~~ai~~a~~e-------------------- 224 (424)
T cd08208 174 PPGEFAELGYQ----SWLGGLDIAKDDEMLADVDW-----CPLEERAALLGKARRRAEAE-------------------- 224 (424)
T ss_pred CHHHHHHHHHH----HHcCCcccccccccccCCCC-----CCHHHHHHHHHHHHHHHHHh--------------------
Confidence 45556555554 556676666 66666554 36788899999999988652
Q ss_pred cccccCCCCCCceEEEEEEEeCCCCHHHHHHHHHHHHhhCCC-ceEEEecCC
Q 024296 147 NDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDL-GVVGIDLSG 197 (269)
Q Consensus 147 ~~~~~~~~~~~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~-~vvGidl~G 197 (269)
+|-. -++.+|=+-+.++..+..+.+.+...+ .++.+..+|
T Consensus 225 ---------TG~~--~~ya~NiT~~~~em~~ra~~a~~~G~~~vmv~~~~~G 265 (424)
T cd08208 225 ---------TGVP--KIYLANITDEVDRLMELHDVAVRNGANALLINAMPVG 265 (424)
T ss_pred ---------hCCc--ceEEEEccCCHHHHHHHHHHHHHhCCCEEEEeeeccc
Confidence 2222 234444455678888888888775432 244444444
No 355
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=26.23 E-value=4.8e+02 Score=23.40 Aligned_cols=43 Identities=16% Similarity=0.100 Sum_probs=30.1
Q ss_pred CCceeeecCCCCChhHHHHHHhcCCCcccccccC---CHHHHHHHHh
Q 024296 218 GLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF---EEEEWRKLKS 261 (269)
Q Consensus 218 gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~---~~~l~~~l~~ 261 (269)
.+++.. .|-..+.+.+.+++..||+=+.=|..+ .|.+...|.+
T Consensus 252 ~ipIig-~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~~i~~ 297 (299)
T cd02940 252 GLPISG-IGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDMCT 297 (299)
T ss_pred CCcEEE-ECCCCCHHHHHHHHHcCCChheEceeecccCCcHHHHHhh
Confidence 577765 455567888999988899887777653 4666665543
No 356
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=26.16 E-value=3.6e+02 Score=24.91 Aligned_cols=79 Identities=18% Similarity=0.040 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecC-CCCCCC----ChhhHHHHHHHHHH-c-CCceeeecCC----------------
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLS-GNPTKG----EWTTFLPALKFARE-Q-GLQITLHCGE---------------- 227 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~-G~E~~~----~~~~f~~~f~~ar~-~-gl~~t~HAGE---------------- 227 (269)
+|+++.+.++.. .-+..=++|+-+ |.-... .|..=.+.++..++ - ++|+++|-|=
T Consensus 165 ~peeA~~Fv~~T--gvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 165 QPEEVEDFVKKT--GVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred CHHHHHHHHHHh--CCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 577777776642 112223444444 221111 23232334454544 3 6999999987
Q ss_pred -----CCChhHHHHHHhcCCCcccccccC
Q 024296 228 -----IPNKEEIQSMLDFLPQRIGHACCF 251 (269)
Q Consensus 228 -----~~~~e~i~~ai~l~a~RIGHG~~~ 251 (269)
-.+.+.++.|+.+|..-|-=++.+
T Consensus 243 ~~~~~Gi~~e~~~kai~~GI~KINi~Tdl 271 (321)
T PRK07084 243 LKDAIGIPEEQLRKAAKSAVCKINIDSDG 271 (321)
T ss_pred cccCCCCCHHHHHHHHHcCCceeccchHH
Confidence 334578899999888888777654
No 357
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=26.15 E-value=1.4e+02 Score=26.28 Aligned_cols=52 Identities=21% Similarity=0.333 Sum_probs=35.8
Q ss_pred hCCCceEEEecCCC---CCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHH
Q 024296 185 MRDLGVVGIDLSGN---PTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSML 238 (269)
Q Consensus 185 ~~~~~vvGidl~G~---E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai 238 (269)
.++..++.+||.|- .....++...++++++++.|+++++=-|=. ...+...+
T Consensus 4 ~~~~~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~--~~~i~~~~ 58 (271)
T PRK03669 4 LQDPLLIFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCSSKT--AAEMLPLQ 58 (271)
T ss_pred cCCCeEEEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEcCCC--HHHHHHHH
Confidence 35566899999883 333334557788999999999999988764 34444333
No 358
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=26.14 E-value=4.9e+02 Score=23.44 Aligned_cols=79 Identities=25% Similarity=0.175 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecC-CCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCChhHHHHHHhcCCCccccc
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLS-GNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 248 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~-G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG 248 (269)
+|+++.+.++..- -+..=|+|+-+ |....+.|..-.+.++..++. ++|+++|.|=..+.+.++.++..|..-|--+
T Consensus 149 ~pe~a~~Fv~~Tg--vD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 226 (276)
T cd00947 149 DPEEAEEFVEETG--VDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKININ 226 (276)
T ss_pred CHHHHHHHHHHHC--CCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4777766655321 12234555555 443332443333455555444 9999999998778889999999999888888
Q ss_pred ccC
Q 024296 249 CCF 251 (269)
Q Consensus 249 ~~~ 251 (269)
+.+
T Consensus 227 T~l 229 (276)
T cd00947 227 TDL 229 (276)
T ss_pred hHH
Confidence 755
No 359
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=26.07 E-value=5.2e+02 Score=23.78 Aligned_cols=70 Identities=13% Similarity=0.069 Sum_probs=44.0
Q ss_pred eEEEecCCCCC-CCChhhHHHHHHHHHHc-----CCceeeec-CCCCChhHHHHHHhcCCCcccccccC-CHHHHHHH
Q 024296 190 VVGIDLSGNPT-KGEWTTFLPALKFAREQ-----GLQITLHC-GEIPNKEEIQSMLDFLPQRIGHACCF-EEEEWRKL 259 (269)
Q Consensus 190 vvGidl~G~E~-~~~~~~f~~~f~~ar~~-----gl~~t~HA-GE~~~~e~i~~ai~l~a~RIGHG~~~-~~~l~~~l 259 (269)
|--|-+.|.+. --++.++..+++.+++. +..+|+=+ ++..+.+.+...-++|..||.-|++. ++++++.+
T Consensus 52 v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~l 129 (360)
T TIGR00539 52 LESIFIGGGTPNTLSVEAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFL 129 (360)
T ss_pred ccEEEeCCCchhcCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHh
Confidence 66677776554 35667777888777643 33444433 22234555555556899999999974 66655555
No 360
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=25.99 E-value=3.3e+02 Score=22.50 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHH
Q 024296 169 RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSML 238 (269)
Q Consensus 169 ~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai 238 (269)
..+..-+...++++.. +.+-+|=|+... .+|.++..++|+.|..++.=..|...++.++++-
T Consensus 88 ~~Dv~laIDame~~~~---~~iD~~vLvSgD-----~DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~~ac 149 (160)
T TIGR00288 88 DVDVRMAVEAMELIYN---PNIDAVALVTRD-----ADFLPVINKAKENGKETIVIGAEPGFSTALQNSA 149 (160)
T ss_pred cccHHHHHHHHHHhcc---CCCCEEEEEecc-----HhHHHHHHHHHHCCCEEEEEeCCCCChHHHHHhc
Confidence 4456666666666543 234455554333 4699999999999999998776877777777654
No 361
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=25.82 E-value=3.9e+02 Score=23.75 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc---CCceeeecCCCCChhHHH---HHHhcCCC
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---GLQITLHCGEIPNKEEIQ---SMLDFLPQ 243 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~---gl~~t~HAGE~~~~e~i~---~ai~l~a~ 243 (269)
.+.+...+.++...+..-++++-.+..|.-..-+.++...+++.+.+. .+++.+|+|..+..+.+. .|.++|++
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d 98 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGAD 98 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCC
Confidence 345556666666655322333333334433334556677777766553 489999998866555443 34445665
Q ss_pred c
Q 024296 244 R 244 (269)
Q Consensus 244 R 244 (269)
-
T Consensus 99 ~ 99 (292)
T PRK03170 99 G 99 (292)
T ss_pred E
Confidence 3
No 362
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=25.05 E-value=5e+02 Score=23.21 Aligned_cols=89 Identities=9% Similarity=-0.011 Sum_probs=51.0
Q ss_pred CCceEEEEEEEeCC--CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc---CCceeeecCCCCC
Q 024296 156 KKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---GLQITLHCGEIPN 230 (269)
Q Consensus 156 ~~i~~rli~~~~R~--~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~---gl~~t~HAGE~~~ 230 (269)
.|+..-++.-++.+ .+.+.....++...+..-++++-.+..|.=..-+.++...+++.+.+. .+++.+|.|- ..
T Consensus 7 ~Gi~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t 85 (296)
T TIGR03249 7 SGLLSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NT 85 (296)
T ss_pred CceEEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cH
Confidence 46655555555443 456666677776665432334433444433334567778887766653 4999999984 33
Q ss_pred hhHH---HHHHhcCCCcc
Q 024296 231 KEEI---QSMLDFLPQRI 245 (269)
Q Consensus 231 ~e~i---~~ai~l~a~RI 245 (269)
.+.+ +.|.++|++-+
T Consensus 86 ~~ai~~a~~a~~~Gadav 103 (296)
T TIGR03249 86 SDAIEIARLAEKAGADGY 103 (296)
T ss_pred HHHHHHHHHHHHhCCCEE
Confidence 4443 33444677643
No 363
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=24.93 E-value=4.4e+02 Score=22.55 Aligned_cols=20 Identities=15% Similarity=-0.059 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCeEEEEec
Q 024296 78 TQEVVEDFASENIVYLELRT 97 (269)
Q Consensus 78 ~~~~~~~~~~dnV~Y~Elr~ 97 (269)
+.+.++.+++-|..++|+..
T Consensus 16 l~e~~~~~~e~G~~~vEl~~ 35 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLF 35 (254)
T ss_pred HHHHHHHHHHcCCCEEEecC
Confidence 46678888899999999975
No 364
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=24.89 E-value=4.3e+02 Score=22.38 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=43.2
Q ss_pred CceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCChhHHHHHHhcCCCcccccccC--CHHHHHH
Q 024296 188 LGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRK 258 (269)
Q Consensus 188 ~~vvGidl~G~E~~~~~~~f~~~f~~ar~-~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~~~l~~~ 258 (269)
+.+.=+|+.+...+.+ ...++++.+++ -++|+.+ .|=..+.+.+..++..|+++|==|... +|+.+..
T Consensus 43 ~~l~v~dl~~~~~g~~--~~~~~i~~i~~~~~~pi~~-ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~ 113 (230)
T TIGR00007 43 ERIHVVDLDGAKEGGP--VNLPVIKKIVRETGVPVQV-GGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKE 113 (230)
T ss_pred CEEEEEeCCccccCCC--CcHHHHHHHHHhcCCCEEE-eCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHH
Confidence 4577799998765432 12334444443 3788888 454456788888999999998656443 4554433
No 365
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=24.66 E-value=4.8e+02 Score=22.83 Aligned_cols=73 Identities=16% Similarity=0.036 Sum_probs=47.2
Q ss_pred CCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcccccccC--CHHHHHHHHh
Q 024296 186 RDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKS 261 (269)
Q Consensus 186 ~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~--~~~l~~~l~~ 261 (269)
.-+.+.=+||.|...+.+ ...++.+...+.-+++.+=.|= .+.+.+...+.+|++|+-=|..+ +|++++.+.+
T Consensus 43 ga~~lhivDLd~a~~g~~--~n~~~i~~i~~~~~~v~vGGGI-rs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~ 117 (241)
T PRK14114 43 GFTLIHVVDLSKAIENSV--ENLPVLEKLSEFAEHIQIGGGI-RSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKE 117 (241)
T ss_pred CCCEEEEEECCCcccCCc--chHHHHHHHHhhcCcEEEecCC-CCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHH
Confidence 346799999987543322 2344444443332566665554 35788888999999997666543 7888888754
No 366
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=24.59 E-value=2.6e+02 Score=27.28 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=40.0
Q ss_pred ceEEEecCCCCC-CCChhhHHHHHHHHHHc-----CC-ceeeecCC--CCChhHHHHHHhcCCCcccccccC-CHHHHHH
Q 024296 189 GVVGIDLSGNPT-KGEWTTFLPALKFAREQ-----GL-QITLHCGE--IPNKEEIQSMLDFLPQRIGHACCF-EEEEWRK 258 (269)
Q Consensus 189 ~vvGidl~G~E~-~~~~~~f~~~f~~ar~~-----gl-~~t~HAGE--~~~~e~i~~ai~l~a~RIGHG~~~-~~~l~~~ 258 (269)
.+..|-+.|... --++.++..++..+++. ++ -+|+=+|- +.+++.+..+-+.|..||.-|++. ++++++.
T Consensus 218 ~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~ 297 (488)
T PRK08207 218 KITTIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKA 297 (488)
T ss_pred ceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHH
Confidence 355666665433 34566677777776653 22 44554443 223444444445788888888864 5555544
Q ss_pred H
Q 024296 259 L 259 (269)
Q Consensus 259 l 259 (269)
+
T Consensus 298 i 298 (488)
T PRK08207 298 I 298 (488)
T ss_pred h
Confidence 4
No 367
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=24.14 E-value=80 Score=29.75 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCceeeecCCCC-----ChhHHHHHHh-cCC---CcccccccCC
Q 024296 208 LPALKFAREQGLQITLHCGEIP-----NKEEIQSMLD-FLP---QRIGHACCFE 252 (269)
Q Consensus 208 ~~~f~~ar~~gl~~t~HAGE~~-----~~e~i~~ai~-l~a---~RIGHG~~~~ 252 (269)
.+....+.+.|.++.+-.|+.. .|+.+..|-. +.+ -|||||+..+
T Consensus 174 TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~~~~~~~g~g~d~h 227 (378)
T PRK09382 174 TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSPSRDIRTGNGFDVH 227 (378)
T ss_pred ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhccCCceEEEEeeeee
Confidence 3344455567888888888875 3677765544 343 5999999764
No 368
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=24.09 E-value=6e+02 Score=23.81 Aligned_cols=77 Identities=14% Similarity=0.069 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEE---EEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccc
Q 024296 70 DHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM 146 (269)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~dnV~Y~---Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (269)
+++.+.+ ++.+++.-||-.+ |.-.++.. .+.++-+..+.++++++.+
T Consensus 139 ~~~~~a~----~~~~~~~gGvD~IKdDe~l~~~~~-----~p~~eRv~~v~~av~~a~~--------------------- 188 (364)
T cd08210 139 SAAELAE----LAYAFALGGIDIIKDDHGLADQPF-----APFEERVKACQEAVAEANA--------------------- 188 (364)
T ss_pred CHHHHHH----HHHHHHhcCCCeeecCccccCccC-----CCHHHHHHHHHHHHHHHHh---------------------
Confidence 4555544 4555666777776 66555443 5788999999999988754
Q ss_pred cccccCCCCCCceEEEEEEEeCCCCHHHHHHHHHHHHhhC
Q 024296 147 NDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMR 186 (269)
Q Consensus 147 ~~~~~~~~~~~i~~rli~~~~R~~~~~~~~~~~~~a~~~~ 186 (269)
++|-. .++.++=+-+.+++.+..+.|.+..
T Consensus 189 --------eTG~~--~~y~~Nita~~~em~~ra~~a~~~G 218 (364)
T cd08210 189 --------ETGGR--TLYAPNVTGPPTQLLERARFAKEAG 218 (364)
T ss_pred --------hcCCc--ceEEEecCCCHHHHHHHHHHHHHcC
Confidence 23322 3444444455667778888877654
No 369
>PRK08444 hypothetical protein; Provisional
Probab=24.08 E-value=5.9e+02 Score=23.69 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCC-CChhhHHHHHHHHHHcCCceeeec---CC------CC--ChhHH-HH
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTK-GEWTTFLPALKFAREQGLQITLHC---GE------IP--NKEEI-QS 236 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~-~~~~~f~~~f~~ar~~gl~~t~HA---GE------~~--~~e~i-~~ 236 (269)
.+++++.+.+..+.+. ++.-|-|+|.+.. .+++.+.++++..|+.--.+.+|| +| .. ..+.+ ..
T Consensus 80 ls~eeI~~~a~~a~~~---G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~ 156 (353)
T PRK08444 80 MSHEEILEIVKNSVKR---GIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLED 156 (353)
T ss_pred CCHHHHHHHHHHHHHC---CCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4577776666665543 4445555544332 255778899999987633455665 45 22 23333 44
Q ss_pred HHhcCCCccccc
Q 024296 237 MLDFLPQRIGHA 248 (269)
Q Consensus 237 ai~l~a~RIGHG 248 (269)
..+.|.+|+-||
T Consensus 157 LkeAGl~~~~g~ 168 (353)
T PRK08444 157 MLEYGVDSMPGG 168 (353)
T ss_pred HHHhCcccCCCC
Confidence 445799999885
No 370
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=24.04 E-value=2.3e+02 Score=28.34 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=44.5
Q ss_pred ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCCh-hHHHHHHhcCCCccccccc-------CCHHHHHHHH
Q 024296 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNK-EEIQSMLDFLPQRIGHACC-------FEEEEWRKLK 260 (269)
Q Consensus 189 ~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~-e~i~~ai~l~a~RIGHG~~-------~~~~l~~~l~ 260 (269)
+++||.+..+- .-++..+..+++.|++.|+++.+|+ |+.+. --+.++++.--.|-=|-++ -.|++++.+.
T Consensus 212 Ga~gfK~h~~y-~~s~e~L~~al~~A~e~gv~V~iH~-ET~~E~g~ve~t~~a~g~rpIh~~H~~G~g~ghapdi~~~~~ 289 (567)
T TIGR01792 212 GACGLKVHEDW-GATPAAIDNALSVADEYDVQVAVHT-DTLNESGFVEDTIAAFKGRTIHTYHTEGAGGGHAPDIIVVVG 289 (567)
T ss_pred CCcEEEeCCCC-CCCHHHHHHHHHHHHHcCCEEEEeC-CCcccchHHHHHHHHHCCCcchhHhhcCCCCCcHHHHHHHcC
Confidence 56777765322 2456778889999999999999999 87643 1133333311122222211 1377777766
Q ss_pred hCCC
Q 024296 261 SSKI 264 (269)
Q Consensus 261 ~~~I 264 (269)
+.+|
T Consensus 290 ~~~~ 293 (567)
T TIGR01792 290 YNNI 293 (567)
T ss_pred CCCc
Confidence 6654
No 371
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.02 E-value=4.7e+02 Score=22.58 Aligned_cols=62 Identities=8% Similarity=-0.024 Sum_probs=35.1
Q ss_pred CCceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCC
Q 024296 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE 227 (269)
Q Consensus 156 ~~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE 227 (269)
.|+.+.+..+ ..+++...+.++.+...+.++++ +.+.. .....+.++.+++.|+|++.--..
T Consensus 28 ~g~~~~~~~~---~~~~~~~~~~i~~~~~~~vdgii---i~~~~----~~~~~~~l~~l~~~~ipvV~~~~~ 89 (288)
T cd01538 28 LGAEVIVQNA---NGDPAKQISQIENMIAKGVDVLV---IAPVD----GEALASAVEKAADAGIPVIAYDRL 89 (288)
T ss_pred cCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEE---EecCC----hhhHHHHHHHHHHCCCCEEEECCC
Confidence 4555443322 23455556677766665555544 33211 123456788888899998777543
No 372
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=24.00 E-value=8.8e+02 Score=25.81 Aligned_cols=73 Identities=21% Similarity=0.188 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhCCC--ceEEE-ecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCCh--hHHHHHHhcCCCccccc
Q 024296 175 AMETVKLALEMRDL--GVVGI-DLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNK--EEIQSMLDFLPQRIGHA 248 (269)
Q Consensus 175 ~~~~~~~a~~~~~~--~vvGi-dl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~~--e~i~~ai~l~a~RIGHG 248 (269)
..-.+++|.+.... .+.|| |++|-=. |..-..++...|+. +||+-+|--.++|. -.+..|++.|+|=+.-.
T Consensus 693 L~YY~~lA~el~~~GaHIlaIKDMAGLLK---P~AA~~Li~aLr~~~dlPIHlHTHDTsG~~~at~~aA~~AGvDivD~A 769 (1149)
T COG1038 693 LDYYVKLAKELEKAGAHILAIKDMAGLLK---PAAAYRLISALRETVDLPIHLHTHDTSGNGVATYLAAVEAGVDIVDVA 769 (1149)
T ss_pred HHHHHHHHHHHHhcCCcEEEehhhhhccC---HHHHHHHHHHHHHhcCCceEEeccCCCccHHHHHHHHHHcCCchhhhh
Confidence 34556666665332 36666 6666433 22223345555553 99999999988764 35567888898888766
Q ss_pred cc
Q 024296 249 CC 250 (269)
Q Consensus 249 ~~ 250 (269)
..
T Consensus 770 ~~ 771 (1149)
T COG1038 770 MA 771 (1149)
T ss_pred hh
Confidence 54
No 373
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=23.75 E-value=6.8e+02 Score=24.31 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEE---EEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccc
Q 024296 70 DHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM 146 (269)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~dnV~Y~---Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (269)
+++.+.++ +.+++.-||-++ |.-.++.. .++++.+.++.++++++.+
T Consensus 159 sp~~~A~~----~~~~~~GGvD~IKDDE~l~~~~~-----~p~~~Rv~~~~~a~~~a~~--------------------- 208 (450)
T cd08212 159 SAKNYGRV----VYECLRGGLDFTKDDENINSQPF-----MRWRDRFLFVAEAVNKAQA--------------------- 208 (450)
T ss_pred CHHHHHHH----HHHHHccCCcccccCccCCCCCC-----CCHHHHHHHHHHHHHHHHH---------------------
Confidence 45555454 445566676665 55555443 4778899999999998765
Q ss_pred cccccCCCCCCceEEEEEEEeCC-CCHHHHHHHHHHHHhhCCCceEEEecC-CCCCCCChhhHHHHHHHHHHcCCceeee
Q 024296 147 NDACNGTRGKKIYVRLLLSIDRR-ETTEAAMETVKLALEMRDLGVVGIDLS-GNPTKGEWTTFLPALKFAREQGLQITLH 224 (269)
Q Consensus 147 ~~~~~~~~~~~i~~rli~~~~R~-~~~~~~~~~~~~a~~~~~~~vvGidl~-G~E~~~~~~~f~~~f~~ar~~gl~~t~H 224 (269)
++|- +-++.+|=+ .+.++..+..+.+.+.... .+=+|+. |-. -+..+=+.|++.++++-+|
T Consensus 209 --------eTG~--~~~y~~NiTa~~~~em~~ra~~a~~~G~~-~~mv~~~~G~~------~l~~l~~~a~~~~l~IhaH 271 (450)
T cd08212 209 --------ETGE--VKGHYLNVTAGTMEEMYKRAEFAKELGSP-IIMHDLLTGFT------AIQSLAKWCRDNGMLLHLH 271 (450)
T ss_pred --------hhCC--cceeeccccCCCHHHHHHHHHHHHHhCCC-eEeeecccccc------hHHHHHHHhhhcCceEEec
Confidence 2222 235566655 4478888888888775432 2333321 211 1223333355668887777
No 374
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=23.65 E-value=3e+02 Score=24.66 Aligned_cols=64 Identities=8% Similarity=0.166 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCC-----ChhHH----HHHHhcCCCccccccc---CCH----HHHHHHHhC--CCce
Q 024296 205 TTFLPALKFAREQGLQITLHCGEIP-----NKEEI----QSMLDFLPQRIGHACC---FEE----EEWRKLKSS--KIPV 266 (269)
Q Consensus 205 ~~f~~~f~~ar~~gl~~t~HAGE~~-----~~e~i----~~ai~l~a~RIGHG~~---~~~----~l~~~l~~~--~I~l 266 (269)
..+.++.+.|++.|+.+.+...-++ +++.+ ..+.++|++||.-.=. +.| ++++.++++ +++|
T Consensus 115 ~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i 194 (280)
T cd07945 115 ADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHF 194 (280)
T ss_pred HHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeE
Confidence 3456667788888988887775322 34444 3444578988866521 244 466666654 3556
Q ss_pred ee
Q 024296 267 RI 268 (269)
Q Consensus 267 Ei 268 (269)
++
T Consensus 195 ~~ 196 (280)
T cd07945 195 DF 196 (280)
T ss_pred EE
Confidence 54
No 375
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=23.63 E-value=3.7e+02 Score=24.33 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCC-ceeeec-CCCCChhHHHHHHhcCCCcc
Q 024296 169 RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGL-QITLHC-GEIPNKEEIQSMLDFLPQRI 245 (269)
Q Consensus 169 ~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~-~gl-~~t~HA-GE~~~~e~i~~ai~l~a~RI 245 (269)
..+.++....++.+.+. ++-.|.+.|.|.--. .++.++++.+++ .|+ .+++.. |-. -.+.+....+.|.++|
T Consensus 42 ~ls~eei~~~i~~~~~~---gv~~V~ltGGEPll~-~~l~~li~~i~~~~gi~~v~itTNG~l-l~~~~~~L~~~gl~~v 116 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGL---GVRKVRLTGGEPLLR-KDLVELVARLAALPGIEDIALTTNGLL-LARHAKDLKEAGLKRV 116 (334)
T ss_pred CCCHHHHHHHHHHHHHC---CCCEEEEECcccccc-CCHHHHHHHHHhcCCCCeEEEEeCchh-HHHHHHHHHHcCCCeE
Confidence 35677777777766543 466778888775332 467788887777 477 666653 221 1233333334688888
Q ss_pred ccccc
Q 024296 246 GHACC 250 (269)
Q Consensus 246 GHG~~ 250 (269)
.-.+.
T Consensus 117 ~ISld 121 (334)
T TIGR02666 117 NVSLD 121 (334)
T ss_pred EEecc
Confidence 76654
No 376
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=23.57 E-value=3.7e+02 Score=23.23 Aligned_cols=83 Identities=22% Similarity=0.184 Sum_probs=44.7
Q ss_pred EEEEeCCCC---------HHHHHHHHHHHHhhCCCceEEEecCCCCCCC-ChhhHHHHHHHHHHcCCceeeecCCCC--C
Q 024296 163 LLSIDRRET---------TEAAMETVKLALEMRDLGVVGIDLSGNPTKG-EWTTFLPALKFAREQGLQITLHCGEIP--N 230 (269)
Q Consensus 163 i~~~~R~~~---------~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~-~~~~f~~~f~~ar~~gl~~t~HAGE~~--~ 230 (269)
++|+.|... ....++-++++.++.-+++|==-|. +++. +-..-+.+...+ .++|+|+|-.=.. +
T Consensus 62 ~ycMiRpR~GDFvYsd~Em~a~~~Dv~llk~~GAdGfVFGaLt--~dgsid~~~C~si~~~~--rplPVTFHRAfD~~~D 137 (255)
T KOG4013|consen 62 LYCMIRPRAGDFVYSDDEMAANMEDVELLKKAGADGFVFGALT--SDGSIDRTSCQSIIETA--RPLPVTFHRAFDVAYD 137 (255)
T ss_pred eEEEEecCCCCcccchHHHHHHHHHHHHHHHcCCCceEEeecC--CCCCcCHHHHHHHHHhc--CCCceeeeeehhhhcC
Confidence 678877432 2345677788877766665522221 2211 223344444433 4899999965433 2
Q ss_pred hh-HHHHHH-hcCCCcc-cccc
Q 024296 231 KE-EIQSML-DFLPQRI-GHAC 249 (269)
Q Consensus 231 ~e-~i~~ai-~l~a~RI-GHG~ 249 (269)
+- ...+++ ++|-+|+ -.|.
T Consensus 138 ~k~~lE~~l~~lGF~rvLtSG~ 159 (255)
T KOG4013|consen 138 WKTCLEDALLDLGFKRVLTSGQ 159 (255)
T ss_pred HHHHHHHHHHHhhHHHHhhcCC
Confidence 32 234466 4777775 3344
No 377
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.28 E-value=4.4e+02 Score=21.95 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCccc
Q 024296 209 PALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG 246 (269)
Q Consensus 209 ~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIG 246 (269)
+....++..+++.. -| ..+++.+..|.+.|++-|+
T Consensus 96 ~~~~~~~~~~~~~i--~G-~~t~~e~~~A~~~Gadyv~ 130 (187)
T PRK07455 96 ELIEAAVAQDIPII--PG-ALTPTEIVTAWQAGASCVK 130 (187)
T ss_pred HHHHHHHHcCCCEE--cC-cCCHHHHHHHHHCCCCEEE
Confidence 34555666676644 35 6678888888888888886
No 378
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=23.22 E-value=4e+02 Score=23.27 Aligned_cols=57 Identities=19% Similarity=0.119 Sum_probs=38.2
Q ss_pred HHHHHHHH-cCCceeeecCCCCChhHHHHHHhcC-CCcccccccC-----C-HHHHHHHHhCCCce
Q 024296 209 PALKFARE-QGLQITLHCGEIPNKEEIQSMLDFL-PQRIGHACCF-----E-EEEWRKLKSSKIPV 266 (269)
Q Consensus 209 ~~f~~ar~-~gl~~t~HAGE~~~~e~i~~ai~l~-a~RIGHG~~~-----~-~~l~~~l~~~~I~l 266 (269)
+.++.+++ .++|+.+.-|- .+++.+.+++..+ ++=+-=|..+ + .++.+.+++.+|++
T Consensus 189 ~~~~~i~~~~~ipvia~GGi-~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 189 ELTKAVSEAVKIPVIASGGA-GKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHhCCCCEEEeCCC-CCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 33444443 48998887777 5688888888865 6654333322 2 46889999999875
No 379
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=23.20 E-value=5.3e+02 Score=23.39 Aligned_cols=77 Identities=17% Similarity=0.052 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcC-C-ceeeec-CCCCChhHHHHHHhcCCCccc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQG-L-QITLHC-GEIPNKEEIQSMLDFLPQRIG 246 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~g-l-~~t~HA-GE~~~~e~i~~ai~l~a~RIG 246 (269)
.+.++....++.+.+ .++-.|.+.|.|.--. .++.++.+.+++.+ + .+++.. |-.. .+.+....+.|.+||.
T Consensus 45 ls~eei~~li~~~~~---~Gv~~I~~tGGEPllr-~dl~~li~~i~~~~~l~~i~itTNG~ll-~~~~~~L~~aGl~~v~ 119 (329)
T PRK13361 45 LSLEELAWLAQAFTE---LGVRKIRLTGGEPLVR-RGCDQLVARLGKLPGLEELSLTTNGSRL-ARFAAELADAGLKRLN 119 (329)
T ss_pred CCHHHHHHHHHHHHH---CCCCEEEEECcCCCcc-ccHHHHHHHHHhCCCCceEEEEeChhHH-HHHHHHHHHcCCCeEE
Confidence 466666666665543 3577788888775322 46778888888764 4 344432 2211 2323333447889988
Q ss_pred ccccC
Q 024296 247 HACCF 251 (269)
Q Consensus 247 HG~~~ 251 (269)
-.+..
T Consensus 120 ISlDs 124 (329)
T PRK13361 120 ISLDT 124 (329)
T ss_pred EEecc
Confidence 77653
No 380
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.19 E-value=3.3e+02 Score=25.21 Aligned_cols=64 Identities=11% Similarity=0.032 Sum_probs=45.4
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCcc--cccccCCHHHHHHHHhCCCceee
Q 024296 202 GEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI--GHACCFEEEEWRKLKSSKIPVRI 268 (269)
Q Consensus 202 ~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RI--GHG~~~~~~l~~~l~~~~I~lEi 268 (269)
.+.+.|..+++.|++.|+.+..=. .+.+++.-+..+|++.+ |-+-..+-.+++.+++.+-|+=+
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stp---fd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvil 138 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTP---FDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVIL 138 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEe---CCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEE
Confidence 356789999999999999987543 34566655556766554 44444467789999998888743
No 381
>COG1841 RpmD Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]
Probab=22.96 E-value=2e+02 Score=19.26 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=25.0
Q ss_pred CCCCChhHHHHHHh-cCCCcccccccC--CHHHHHHHH
Q 024296 226 GEIPNKEEIQSMLD-FLPQRIGHACCF--EEEEWRKLK 260 (269)
Q Consensus 226 GE~~~~e~i~~ai~-l~a~RIGHG~~~--~~~l~~~l~ 260 (269)
|=.+-++.+++.+. ||-.||+|.+-. .|....++.
T Consensus 8 s~ig~~~~~r~tl~~LgL~kin~~v~~~dtp~irGMi~ 45 (55)
T COG1841 8 SPIGRPPKIRKTLRLLGLRKINHTVIVEDTPAVRGMLN 45 (55)
T ss_pred ccCCCChHHHHHHHHhCCCccCCEEEEcCCHHHHHHHH
Confidence 33344677888887 799999999865 476655554
No 382
>PLN02858 fructose-bisphosphate aldolase
Probab=22.85 E-value=2.8e+02 Score=30.90 Aligned_cols=96 Identities=14% Similarity=0.102 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHH-HHHHcCCceeeecCCCCChhHHHHHHhcCCCcccc-c
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH-A 248 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIGH-G 248 (269)
+.+.+..+++.|.+.+.+.|+.+.-..... .+.+ +.++.. .|++..+|+.+|---..+.+.+..|++.|-+=|=- |
T Consensus 1123 n~e~~~avi~aAe~~~sPvIl~~~~~~~~~-~~~~-~~~~~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~Dg 1200 (1378)
T PLN02858 1123 NLEGIEAVVAAAEAEKSPAILQVHPGALKQ-GGIP-LVSCCIAAAEQASVPITVHFDHGTSKHELLEALELGFDSVMVDG 1200 (1378)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCccHHhh-cCHH-HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeC
Confidence 578888888888888887777764332211 1223 665444 56677999999998877889999999865321100 1
Q ss_pred ccCC--------HHHHHHHHhCCCceee
Q 024296 249 CCFE--------EEEWRKLKSSKIPVRI 268 (269)
Q Consensus 249 ~~~~--------~~l~~~l~~~~I~lEi 268 (269)
-.++ .+++++....+|.+|-
T Consensus 1201 S~l~~eeNi~~t~~vv~~Ah~~gv~VEa 1228 (1378)
T PLN02858 1201 SHLSFTENISYTKSISSLAHSKGLMVEA 1228 (1378)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 1111 2478888888999983
No 383
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=22.52 E-value=2.5e+02 Score=21.38 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=35.6
Q ss_pred HHHHHHHHhhC-CCceEEEecCCCC-------CCCChhhHHHHHHHHHHcCCc---eeeecCCCCChhHHHHHHh
Q 024296 176 METVKLALEMR-DLGVVGIDLSGNP-------TKGEWTTFLPALKFAREQGLQ---ITLHCGEIPNKEEIQSMLD 239 (269)
Q Consensus 176 ~~~~~~a~~~~-~~~vvGidl~G~E-------~~~~~~~f~~~f~~ar~~gl~---~t~HAGE~~~~e~i~~ai~ 239 (269)
.+.++...++. ....+|++-..++ .+..++.+...++.+++.|++ ..+..+-..+.+.+.+.++
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~~~ 164 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEETIR 164 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHhC
Confidence 34555555544 2223444444444 234567788889999999887 2233333335566666654
No 384
>PLN02417 dihydrodipicolinate synthase
Probab=22.39 E-value=5.5e+02 Score=22.76 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCC--CC-CCChhhHHHHHHHHHHc---CCceeeecCCCCChhHHH---HHHhc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGN--PT-KGEWTTFLPALKFAREQ---GLQITLHCGEIPNKEEIQ---SMLDF 240 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~--E~-~~~~~~f~~~f~~ar~~---gl~~t~HAGE~~~~e~i~---~ai~l 240 (269)
.+.+...+.++..... ++-||=+.|. |. .-+.++...+.+.+.+. .+++.++.|..+..+.+. .|-++
T Consensus 19 iD~~~~~~~i~~l~~~---Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~ 95 (280)
T PLN02417 19 FDLEAYDSLVNMQIEN---GAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAV 95 (280)
T ss_pred cCHHHHHHHHHHHHHc---CCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHc
Confidence 3555666666666553 4555544442 32 23456777777766553 499999999876555443 34445
Q ss_pred CCC
Q 024296 241 LPQ 243 (269)
Q Consensus 241 ~a~ 243 (269)
|++
T Consensus 96 Gad 98 (280)
T PLN02417 96 GMH 98 (280)
T ss_pred CCC
Confidence 665
No 385
>PF13918 PLDc_3: PLD-like domain
Probab=22.18 E-value=1.2e+02 Score=25.43 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=16.6
Q ss_pred CCCCCceEEEEEEEeCCCCHHH
Q 024296 153 TRGKKIYVRLLLSIDRRETTEA 174 (269)
Q Consensus 153 ~~~~~i~~rli~~~~R~~~~~~ 174 (269)
.-.-|++||++++.-++-++..
T Consensus 129 A~~R~V~VRlLIS~W~ht~p~~ 150 (177)
T PF13918_consen 129 AIERGVKVRLLISCWKHTDPSM 150 (177)
T ss_pred HHHcCCeEEEEEeecCCCChhH
Confidence 3345899999999988777643
No 386
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=22.15 E-value=7.4e+02 Score=24.17 Aligned_cols=89 Identities=12% Similarity=0.053 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEE---EEecCCCCcccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 024296 69 TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (269)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~dnV~Y~---Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (269)
-+++.+.+++++ ++.-||-++ |.-.++.. .++++.+.++.++++++.+
T Consensus 173 Lsp~~~a~~~y~----~~~GGvD~IKDDE~l~~q~f-----~p~~~Rv~~~~~a~~~a~~-------------------- 223 (468)
T PRK04208 173 LSAKNYGRVVYE----ALRGGLDFTKDDENLNSQPF-----NRWRDRFLFVMEAIDKAEA-------------------- 223 (468)
T ss_pred CCHHHHHHHHHH----HHhcCCceeeCCCCCCCCCC-----ccHHHHHHHHHHHHHHHHH--------------------
Confidence 345666665555 455666655 55554443 3678889999999988754
Q ss_pred ccccccCCCCCCceEEEEEEEeCCCC-HHHHHHHHHHHHhhCCC-ceEEEecCC
Q 024296 146 MNDACNGTRGKKIYVRLLLSIDRRET-TEAAMETVKLALEMRDL-GVVGIDLSG 197 (269)
Q Consensus 146 ~~~~~~~~~~~~i~~rli~~~~R~~~-~~~~~~~~~~a~~~~~~-~vvGidl~G 197 (269)
++|-. -++.+|=+-+ +++..+..+.+.+.... .++.+.++|
T Consensus 224 ---------eTG~~--k~y~~NiT~~~~~em~~ra~~~~e~G~~~~mv~~~~~G 266 (468)
T PRK04208 224 ---------ETGER--KGHYLNVTAPTMEEMYKRAEFAKELGSPIVMIDVVTAG 266 (468)
T ss_pred ---------hhCCc--ceEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeccccc
Confidence 22322 2344554455 77777888888775432 244444444
No 387
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=22.05 E-value=5.9e+02 Score=22.94 Aligned_cols=132 Identities=9% Similarity=-0.002 Sum_probs=76.4
Q ss_pred HHHHHHhcCCeEEEEecCCCC---cccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC
Q 024296 81 VVEDFASENIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (269)
Q Consensus 81 ~~~~~~~dnV~Y~Elr~~p~~---~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (269)
.++.+..-++.++-+.+.-.. ......+.++..+.+...++.+++ .+
T Consensus 74 ~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~------------------------------~g 123 (344)
T TIGR02146 74 DAKVAVELGVDGIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKS------------------------------AG 123 (344)
T ss_pred HHHHHHHCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------CC
Confidence 344555567776655442211 112335667777777777776542 23
Q ss_pred ceEEEE-EEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc--CCceeeecCCCCCh--h
Q 024296 158 IYVRLL-LSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ--GLQITLHCGEIPNK--E 232 (269)
Q Consensus 158 i~~rli-~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~--gl~~t~HAGE~~~~--e 232 (269)
+.+.+- ....|. +++...+..+.+....++.+.-.|-.|.. .|.+....+...++. ++++.+|+-...+- .
T Consensus 124 ~~~~~~~~~~~~~-~~~~~~~~~d~~~~~g~~~i~~~dt~g~~---~p~~v~~~v~~~~d~~~~~~~~~H~Hn~~g~ava 199 (344)
T TIGR02146 124 LEVRFSAEDTFRS-ELADLLSIYETVGVFGVDRVGIADTVGKA---APRQVYELIRTVVRVVPGVDIELHAHNDTGCAVA 199 (344)
T ss_pred CeEEEEEeeCCCC-CHHHHHHHHHHHHHCCCCEEEEcCCCCcC---CHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHH
Confidence 333332 223333 45666666666666666667777777753 234444555655565 48999999887753 5
Q ss_pred HHHHHHhcCCCccc
Q 024296 233 EIQSMLDFLPQRIG 246 (269)
Q Consensus 233 ~i~~ai~l~a~RIG 246 (269)
+...++..|+.++.
T Consensus 200 nt~~al~~ga~~~d 213 (344)
T TIGR02146 200 NAYNAIEGGATIVD 213 (344)
T ss_pred HHHHHHHcCCCEEE
Confidence 66677777776654
No 388
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=22.02 E-value=4e+02 Score=24.49 Aligned_cols=110 Identities=16% Similarity=0.211 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEE---EEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccc
Q 024296 70 DHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM 146 (269)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~dnV~Y~---Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (269)
+++.+.+++| +++.-|+-++ |.-.++.+ .++++-+..+.++++++.++
T Consensus 28 sp~~~a~~~y----~~a~GG~D~IKDDE~l~~q~f-----~p~~eRv~~~~~a~~~a~~e-------------------- 78 (309)
T PF00016_consen 28 SPEELAELAY----EFALGGVDFIKDDENLANQPF-----CPFEERVPACMEAVDRAEEE-------------------- 78 (309)
T ss_dssp -HHHHHHHHH----HHHHTTSSEEEE-TT-SSBTT-----BEHHHHHHHHHHHHHHHHHH--------------------
T ss_pred cccchhhHHH----hhhhcccceecccccccCccc-----ccHhHhHHhhhhhhhccccc--------------------
Confidence 3455555444 4566778776 55555443 36788899999999988652
Q ss_pred cccccCCCCCCceEEEEEEEeCC-CCHHHHHHHHHHHHhhCCCc-eEEEecCCCCCCCChhhHHHHHHHHHHcCCceeee
Q 024296 147 NDACNGTRGKKIYVRLLLSIDRR-ETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (269)
Q Consensus 147 ~~~~~~~~~~~i~~rli~~~~R~-~~~~~~~~~~~~a~~~~~~~-vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~H 224 (269)
+|-+ -++.+|=+ .++++..+..+.+.+...+. ++.+-.+| +.....+-+.++..++++-.|
T Consensus 79 ---------TG~~--~ly~~NiT~~~~~em~~ra~~a~~~G~~~vmv~~~~~G------~~~~~~l~~~~~~~~~~ih~H 141 (309)
T PF00016_consen 79 ---------TGEK--KLYAANITADTPDEMIERAEYAKEAGANAVMVNVLTAG------FSALQSLAEDARDNGLPIHAH 141 (309)
T ss_dssp ---------HSS----EEEEEE-SSSHHHHHHHHHHHHHHTGSEEEEEHHHHC------HHHHHHHHHHHHHHTSEEEEE
T ss_pred ---------ccee--cceecccccccHHHHHHhhhhhhhhccchhhccccccc------ccccchhhhhhcccceeeeec
Confidence 1211 24444433 34788888888888865432 33333333 122444555667778777777
Q ss_pred c
Q 024296 225 C 225 (269)
Q Consensus 225 A 225 (269)
-
T Consensus 142 ~ 142 (309)
T PF00016_consen 142 R 142 (309)
T ss_dssp T
T ss_pred c
Confidence 3
No 389
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=21.93 E-value=3.3e+02 Score=25.59 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=14.9
Q ss_pred hhHHHHHHhcCCCcccccccC-CHHHHHHH
Q 024296 231 KEEIQSMLDFLPQRIGHACCF-EEEEWRKL 259 (269)
Q Consensus 231 ~e~i~~ai~l~a~RIGHG~~~-~~~l~~~l 259 (269)
++.+....++|..||.=|++. +|++++.|
T Consensus 122 ~e~L~~l~~~GvnrisiGvQS~~~~~L~~l 151 (394)
T PRK08898 122 AEKFAQFRASGVNRLSIGIQSFNDAHLKAL 151 (394)
T ss_pred HHHHHHHHHcCCCeEEEecccCCHHHHHHh
Confidence 344444444566666666653 55554444
No 390
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.84 E-value=2.8e+02 Score=23.86 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhCCCceEEEecCCCC------------CCCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCC
Q 024296 175 AMETVKLALEMRDLGVVGIDLSGNP------------TKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP 242 (269)
Q Consensus 175 ~~~~~~~a~~~~~~~vvGidl~G~E------------~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a 242 (269)
+.+.++...+..++.++|.|.+=+. .--.|..=.++.+.|++.|+++..=+ .+|.++..|.++|+
T Consensus 53 ~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i~~iPG~---~TptEi~~a~~~Ga 129 (212)
T PRK05718 53 ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPIPLIPGV---STPSELMLGMELGL 129 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCC---CCHHHHHHHHHCCC
Confidence 3444544444446678999885322 11122222267888888888876433 45666888888887
Q ss_pred Ccc
Q 024296 243 QRI 245 (269)
Q Consensus 243 ~RI 245 (269)
+-+
T Consensus 130 ~~v 132 (212)
T PRK05718 130 RTF 132 (212)
T ss_pred CEE
Confidence 664
No 391
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=21.68 E-value=4.9e+02 Score=21.86 Aligned_cols=121 Identities=21% Similarity=0.183 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccc
Q 024296 71 HATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDAC 150 (269)
Q Consensus 71 ~~~~~~~~~~~~~~~~~dnV~Y~Elr~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (269)
.+.+..++..+++.+...|-+.+ -.+|=|..+...-+-+-..++..+.
T Consensus 24 ~~~I~~aa~~i~~~l~~G~Kvl~---------cGNGgSaadAqHfaael~gRf~~eR----------------------- 71 (176)
T COG0279 24 IEAIERAAQLLVQSLLNGNKVLA---------CGNGGSAADAQHFAAELTGRFEKER----------------------- 71 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEE---------ECCCcchhhHHHHHHHHhhHHHhcC-----------------------
Confidence 55678888888888888776654 2234344444444445555554321
Q ss_pred cCCCCC-CceE----EEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeec
Q 024296 151 NGTRGK-KIYV----RLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 225 (269)
Q Consensus 151 ~~~~~~-~i~~----rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HA 225 (269)
+.+ .|-+ -.+-++--+.+.+..+.---.|.....+.++||..+|+. +.-..+++.|++.|+.+..=.
T Consensus 72 ---~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~~GDvLigISTSGNS-----~nVl~Ai~~Ak~~gm~vI~lt 143 (176)
T COG0279 72 ---PSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQPGDVLIGISTSGNS-----KNVLKAIEAAKEKGMTVIALT 143 (176)
T ss_pred ---CCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeCCCCC-----HHHHHHHHHHHHcCCEEEEEe
Confidence 111 1110 112233334456665554445555566789999999977 458899999999999999999
Q ss_pred CCCCCh
Q 024296 226 GEIPNK 231 (269)
Q Consensus 226 GE~~~~ 231 (269)
|..+|.
T Consensus 144 G~~GG~ 149 (176)
T COG0279 144 GKDGGK 149 (176)
T ss_pred cCCCcc
Confidence 998763
No 392
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=21.26 E-value=2.9e+02 Score=25.70 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=42.0
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhc--CCCcccccccCCHHHHHHHHhCCCce
Q 024296 203 EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDF--LPQRIGHACCFEEEEWRKLKSSKIPV 266 (269)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l--~a~RIGHG~~~~~~l~~~l~~~~I~l 266 (269)
|++.+.++|++|++.|+-+..-- .+..++-....+ .+-.|+-|-..+..++++++..+=|+
T Consensus 88 p~e~~~~Lke~a~~~Gi~~~SSP---fd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPi 150 (347)
T COG2089 88 PLEWHAQLKEYARKRGIIFFSSP---FDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPI 150 (347)
T ss_pred CHHHHHHHHHHHHHcCeEEEecC---CCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCE
Confidence 56778999999999998764211 122333333334 46788988888888888888887665
No 393
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=21.25 E-value=1.4e+02 Score=21.11 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHHHHh--cCCeEEEEe
Q 024296 69 TDHATVTRITQEVVEDFAS--ENIVYLELR 96 (269)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~--dnV~Y~Elr 96 (269)
++|+.+...+.+.+++++. +|+.|.|..
T Consensus 14 tSp~S~d~Ai~~Ai~RA~~t~~~l~wfeV~ 43 (71)
T COG3360 14 TSPTSIDAAIANAIARAADTLDNLDWFEVV 43 (71)
T ss_pred cCCccHHHHHHHHHHHHHhhhhcceEEEEE
Confidence 5688899999999999885 999999985
No 394
>PF10901 DUF2690: Protein of unknown function (DUF2690); InterPro: IPR021224 This bacterial family of proteins has no known function.
Probab=21.21 E-value=61 Score=24.70 Aligned_cols=14 Identities=29% Similarity=0.192 Sum_probs=11.3
Q ss_pred cCCeEEEEecCCCC
Q 024296 88 ENIVYLELRTTPKR 101 (269)
Q Consensus 88 dnV~Y~Elr~~p~~ 101 (269)
-++-++||||+|.=
T Consensus 28 ~~~~~VELRyS~~C 41 (103)
T PF10901_consen 28 VGGGTVELRYSPTC 41 (103)
T ss_pred ccceEEEEEECChh
Confidence 46789999999854
No 395
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=21.20 E-value=5.1e+02 Score=21.89 Aligned_cols=60 Identities=10% Similarity=0.120 Sum_probs=33.4
Q ss_pred CceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeee
Q 024296 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (269)
Q Consensus 157 ~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~H 224 (269)
|..+.+++.-.. .+++...+.++.+...+-++|+..... .....+.+..+++.|+|+..-
T Consensus 32 g~~~~l~i~~~~-~~~~~~~~~~~~~~~~~vdgiIi~~~~-------~~~~~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 32 GLISEFIVTSAD-GDVAQQIADIRNLIAQGVDAIIINPAS-------PTALNPVIEEACEAGIPVVSF 91 (272)
T ss_pred CCeeEEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEeCCC-------hhhhHHHHHHHHHCCCeEEEE
Confidence 554555554333 345555666666666555555554321 122445677788888887764
No 396
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=21.12 E-value=5.9e+02 Score=22.58 Aligned_cols=73 Identities=14% Similarity=0.026 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhHH---HHHHhcCCC
Q 024296 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEI---QSMLDFLPQ 243 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i---~~ai~l~a~ 243 (269)
+.+...+.++...+..-++++-.+..|.=..-+.++...+.+.+.+..=++.++.|..+..+.+ +.|-++|++
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg~~~~~~ai~~a~~a~~~Gad 93 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVGSLNLEESIELARAAKSFGIY 93 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeCcCCHHHHHHHHHHHHHcCCC
Confidence 4555556666555432233433344443223345666666665555322477888765544444 334445665
No 397
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=21.11 E-value=5e+02 Score=22.55 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=46.5
Q ss_pred CceEEEecCCCCC-CCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHh-cCCCc--ccccccC----------CH
Q 024296 188 LGVVGIDLSGNPT-KGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FLPQR--IGHACCF----------EE 253 (269)
Q Consensus 188 ~~vvGidl~G~E~-~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~-l~a~R--IGHG~~~----------~~ 253 (269)
.+|+||-+-..-. ....+.+.++++.+.+.|+++.+|.|.. ....+.+.+. + .-+ |.|.-.. -.
T Consensus 92 ~g~rGvRl~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~-~l~~l~~l~~~~-~l~ivldH~G~p~~~~~~~~~~~~ 169 (263)
T cd01311 92 AGVRGVRFNFLFGGVDNKDELDEIAKRAAELGWHVQVYFDAV-DLPALLPFLQKL-PVAVVIDHFGRPDVTKGVDGAEFA 169 (263)
T ss_pred CCCeEEEEecccCCCCCHHHHHHHHHHHHHcCCEEEEEeCHh-hHHHHHHHHHHC-CCCEEEECCCCCCCCCCCCCHhHH
Confidence 4799997632111 1144567889999999999999999753 2233444333 4 222 3462111 02
Q ss_pred HHHHHHHhCCCceeeC
Q 024296 254 EEWRKLKSSKIPVRIS 269 (269)
Q Consensus 254 ~l~~~l~~~~I~lEic 269 (269)
.+++.++..+|-+.+|
T Consensus 170 ~~l~~l~~pNV~~k~S 185 (263)
T cd01311 170 ALLKLIEEGNVWVKVS 185 (263)
T ss_pred HHHHHHhcCCEEEEec
Confidence 4566665556766654
No 398
>PRK07328 histidinol-phosphatase; Provisional
Probab=21.06 E-value=97 Score=27.39 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=17.4
Q ss_pred CcchhccccCC----CCCHHHHHHHHHHhccCCCc
Q 024296 8 PKVELHAHLNG----SIRDSTLLELARVLGEKGVI 38 (269)
Q Consensus 8 PK~eLH~HL~G----s~~~~tl~~la~~~~~~g~~ 38 (269)
-++|+|+|-.- .-+++-+.+-|.+ .|+.
T Consensus 2 m~~D~H~HT~~s~~~~~~~ee~v~~A~~---~Gl~ 33 (269)
T PRK07328 2 MLVDYHMHTPLCGHAVGTPEEYVQAARR---AGLK 33 (269)
T ss_pred CceeeccCCCCCCCCCCCHHHHHHHHHH---CCCC
Confidence 36789998544 4456666666653 5654
No 399
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=21.04 E-value=7.8e+02 Score=23.98 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCcee--e-ecCC-CCChhHH----HHHHhcC
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQIT--L-HCGE-IPNKEEI----QSMLDFL 241 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t--~-HAGE-~~~~e~i----~~ai~l~ 241 (269)
.+.+.....++.|.+..-+.|.-+|-..+ ........+.|++.|..+. + ++.- ..+++.+ .++.+.|
T Consensus 92 ~~dDvv~~fv~~A~~~Gvd~irif~~lnd-----~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~G 166 (467)
T PRK14041 92 YADDVVELFVKKVAEYGLDIIRIFDALND-----IRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMG 166 (467)
T ss_pred ccchhhHHHHHHHHHCCcCEEEEEEeCCH-----HHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC
Confidence 33444555566766654443444433322 3456666777888876544 1 1110 0122322 3444568
Q ss_pred CCcccccc---cCCH----HHHHHHHhC-CCceee
Q 024296 242 PQRIGHAC---CFEE----EEWRKLKSS-KIPVRI 268 (269)
Q Consensus 242 a~RIGHG~---~~~~----~l~~~l~~~-~I~lEi 268 (269)
++||.=.= .+.| ++++.++++ +++|++
T Consensus 167 ad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~ 201 (467)
T PRK14041 167 VDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEV 201 (467)
T ss_pred CCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEE
Confidence 87764321 1234 366666654 466554
No 400
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.99 E-value=6.1e+02 Score=22.74 Aligned_cols=154 Identities=14% Similarity=0.181 Sum_probs=93.9
Q ss_pred CCHHHHHHHhHHHHHhhCCHHHHHHHHHHHHHHHHhcCCeEEEEecC-CCCc--------c------cCCCC------HH
Q 024296 52 RSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTT-PKRN--------E------SIGMS------KR 110 (269)
Q Consensus 52 ~~l~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~dnV~Y~Elr~~-p~~~--------~------~~g~~------~~ 110 (269)
.+...++..+..+..+++....+...++.+++.+...++..+-.|-+ |... . ..|++ ..
T Consensus 81 G~a~~ll~~Er~~ln~l~~~SGIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~r~~~k~Av~~GGg~~HR~gL~d~vlikdn 160 (273)
T PRK05848 81 GDFSMLLKVERTLLNLLQHSSGIATLTSRYVEALESHKVKLLDTRKTRPLLRIFEKYSVRNGGASNHRLGLDDCLMLKDT 160 (273)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCcchhHHHHHHHHhCCCccccCCchhhhCcCHH
Confidence 35677888888888999888899999999999998889999999987 5431 0 11222 11
Q ss_pred H--HHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCceEEEEEEEeCCCCHHHHHHHHHHHHhhCCC
Q 024296 111 S--YMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDL 188 (269)
Q Consensus 111 ~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~ 188 (269)
. +...+.+.++++++ ..+...++.+-+. +.+++. .|.+..-+
T Consensus 161 Hi~~~g~i~~~v~~~k~-----------------------------~~p~~~~I~VEv~---tleea~----~A~~~GaD 204 (273)
T PRK05848 161 HLKHIKDLKEFIQHARK-----------------------------NIPFTAKIEIECE---SLEEAK----NAMNAGAD 204 (273)
T ss_pred HHHHHCcHHHHHHHHHH-----------------------------hCCCCceEEEEeC---CHHHHH----HHHHcCCC
Confidence 1 12333444444432 1121223333332 344443 34444333
Q ss_pred ceEEEecCCCCCCCChhhHHHHHHHHHHc--CCceeeecCCCCChhHHHHHHhcCCCccccccc
Q 024296 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQ--GLQITLHCGEIPNKEEIQSMLDFLPQRIGHACC 250 (269)
Q Consensus 189 ~vvGidl~G~E~~~~~~~f~~~f~~ar~~--gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~ 250 (269)
++.+| +.++++..++.+..+.. .+.+ .=+|=. +++++.+....|++.|.=|..
T Consensus 205 -iI~LD------n~~~e~l~~~v~~~~~~~~~~~i-eAsGgI-t~~ni~~ya~~GvD~IsvG~l 259 (273)
T PRK05848 205 -IVMCD------NMSVEEIKEVVAYRNANYPHVLL-EASGNI-TLENINAYAKSGVDAISSGSL 259 (273)
T ss_pred -EEEEC------CCCHHHHHHHHHHhhccCCCeEE-EEECCC-CHHHHHHHHHcCCCEEEeChh
Confidence 56654 44667777777765432 2322 223333 789999999999999998853
No 401
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.91 E-value=6.8e+02 Score=23.27 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=37.2
Q ss_pred CceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEec------CCCCCCCChhhHHHH-HHHHHHcCCceeee
Q 024296 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDL------SGNPTKGEWTTFLPA-LKFAREQGLQITLH 224 (269)
Q Consensus 157 ~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl------~G~E~~~~~~~f~~~-f~~ar~~gl~~t~H 224 (269)
.+.+++.+.-.=..+++.+.++++++..... .|+| .|.+...|..+-+.. .+.+++.|+++|+-
T Consensus 257 ~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~----~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir 327 (354)
T PRK14460 257 RVTFEYLLLGGVNDSLEHARELVRLLSRTKC----KLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIR 327 (354)
T ss_pred eEEEEEEEECCCCCCHHHHHHHHHHHhcCCC----cEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEe
Confidence 5667766655445677888888888765432 2333 244433343333333 33556679988765
No 402
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.86 E-value=7.1e+02 Score=23.46 Aligned_cols=67 Identities=15% Similarity=0.028 Sum_probs=39.5
Q ss_pred CceEEEEEEEeCCCCHHHHHHHHHHHHhhCCCceEEEecC-----C-CCCCCC-hhhHHHHHHHHHHcCCceeee
Q 024296 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLS-----G-NPTKGE-WTTFLPALKFAREQGLQITLH 224 (269)
Q Consensus 157 ~i~~rli~~~~R~~~~~~~~~~~~~a~~~~~~~vvGidl~-----G-~E~~~~-~~~f~~~f~~ar~~gl~~t~H 224 (269)
.+.+++++.-.-..+++.+.+.++++....+ ..+-|+|- | .....| ........+..++.|+.+|+-
T Consensus 281 rv~ieyvLi~GvNDs~e~a~~L~~llk~~~~-~~~~VNLIpyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR 354 (373)
T PRK14459 281 RVSIEYALIRDINDQPWRADLLGKKLHGRGG-GWVHVNLIPLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVR 354 (373)
T ss_pred EEEEEEEEeCCCCCCHHHHHHHHHHHhhccC-CCeEEEEEccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEee
Confidence 4555555544445678889888888776532 23445552 1 111222 244555666778889999984
No 403
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=20.85 E-value=3.6e+02 Score=22.23 Aligned_cols=57 Identities=11% Similarity=0.120 Sum_probs=41.4
Q ss_pred HHHHHHcCCceeeecCCCCChhHHHHHHhc-CCCcccccccC--CH---HHHHHHHhCCCceee
Q 024296 211 LKFAREQGLQITLHCGEIPNKEEIQSMLDF-LPQRIGHACCF--EE---EEWRKLKSSKIPVRI 268 (269)
Q Consensus 211 f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l-~a~RIGHG~~~--~~---~l~~~l~~~~I~lEi 268 (269)
...++..|+......| ..+..-+.||+++ ...+|.+-+-+ +- .|+..++++|..+++
T Consensus 72 ~~~l~~~Gf~pv~~kG-~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v 134 (160)
T TIGR00288 72 IEAVVNQGFEPIIVAG-DVDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIV 134 (160)
T ss_pred HHHHHHCCceEEEecC-cccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCCCEEEE
Confidence 4566678988877888 3455666788884 57899987644 32 489999999887654
No 404
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=20.83 E-value=7e+02 Score=23.37 Aligned_cols=166 Identities=16% Similarity=0.103 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHH---HHHhcCCeEEEEe----------cCCCCcc---cCCCCHHHHHHHHHHHHHhhhhcccccccc
Q 024296 70 DHATVTRITQEVVE---DFASENIVYLELR----------TTPKRNE---SIGMSKRSYMDAVVEGLRAVSAVDVDFASR 133 (269)
Q Consensus 70 ~~~~~~~~~~~~~~---~~~~dnV~Y~Elr----------~~p~~~~---~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~ 133 (269)
|.+++.+++.++.+ ++.+-|---+||. ++|..+. .-|=|.+.-+.-..+.++..++.
T Consensus 140 t~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~------- 212 (363)
T COG1902 140 TEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREA------- 212 (363)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHH-------
Confidence 45677777776665 4556788888986 3444332 22335555544444444443320
Q ss_pred ccccccccccccccccccCCCCCCceEEEEEEE--eC-CCCHHHHHHHHHHHHhhCCCc-eEEEecCCCCC--CCC----
Q 024296 134 SIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSI--DR-RETTEAAMETVKLALEMRDLG-VVGIDLSGNPT--KGE---- 203 (269)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~i~~rli~~~--~R-~~~~~~~~~~~~~a~~~~~~~-vvGidl~G~E~--~~~---- 203 (269)
--.++.+.+|+=..= .. ..+.++..++++ .....+ +.-+++++... ..+
T Consensus 213 ------------------vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~---~L~~~G~~d~i~vs~~~~~~~~~~~~~ 271 (363)
T COG1902 213 ------------------VGADFPVGVRLSPDDFFDGGGLTIEEAVELAK---ALEEAGLVDYIHVSEGGYERGGTITVS 271 (363)
T ss_pred ------------------hCCCceEEEEECccccCCCCCCCHHHHHHHHH---HHHhcCCccEEEeecccccCCCCcccc
Confidence 012334556653321 11 234455444444 333444 45666654322 111
Q ss_pred -hhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcC-CCccccccc--CCHHHHHHHHhCC
Q 024296 204 -WTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFL-PQRIGHACC--FEEEEWRKLKSSK 263 (269)
Q Consensus 204 -~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~-a~RIGHG~~--~~~~l~~~l~~~~ 263 (269)
+..|...-...+...-.-++++|-..+++...++|+-| +|=|+=|-. .+|++...+++..
T Consensus 272 ~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~g~ 335 (363)
T COG1902 272 GPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAEGR 335 (363)
T ss_pred ccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHcCC
Confidence 11233333333443335568888888899888888865 888887754 4899988888765
No 405
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=20.69 E-value=5.9e+02 Score=22.62 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCC--CC-CCChhhHHHHHHHHHH---cCCceeeecCCCCChhHHH---HHHhc
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGN--PT-KGEWTTFLPALKFARE---QGLQITLHCGEIPNKEEIQ---SMLDF 240 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~--E~-~~~~~~f~~~f~~ar~---~gl~~t~HAGE~~~~e~i~---~ai~l 240 (269)
.+.+...+.++...+.. |+-||=+.|. |. .-+.++...+++.+.+ ..+++.+++|..+..+.+. .|.++
T Consensus 18 iD~~~~~~~i~~l~~~~--Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~ 95 (288)
T cd00954 18 INEDVLRAIVDYLIEKQ--GVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEEL 95 (288)
T ss_pred CCHHHHHHHHHHHHhcC--CCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHc
Confidence 34555666666665530 4555544442 22 2344666666665554 3588899998866555443 44456
Q ss_pred CCCcc
Q 024296 241 LPQRI 245 (269)
Q Consensus 241 ~a~RI 245 (269)
|++=+
T Consensus 96 Gad~v 100 (288)
T cd00954 96 GYDAI 100 (288)
T ss_pred CCCEE
Confidence 76644
No 406
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.64 E-value=4.7e+02 Score=24.56 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhhCCCc-eEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeec--CCCCChhHHHHHH-hcCCCcc
Q 024296 171 TTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHC--GEIPNKEEIQSML-DFLPQRI 245 (269)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~-vvGidl~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HA--GE~~~~e~i~~ai-~l~a~RI 245 (269)
+++..+++++...+++.++ =+=+|=.|.+.-.|+ ..++.+.+++. |+.+..=- |=..+ +.+.+++ +.|.+||
T Consensus 142 d~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~--l~~lVqalk~~~~v~vVSmQTng~~L~-~~lv~eLeeAGLdRi 218 (414)
T COG2100 142 DPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPH--LVDLVQALKEHKGVEVVSMQTNGVLLS-KKLVDELEEAGLDRI 218 (414)
T ss_pred cHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchh--HHHHHHHHhcCCCceEEEEeeCceecc-HHHHHHHHHhCCceE
Confidence 4788899999988887654 344555565554432 33345555554 43333211 11112 4444545 4899999
Q ss_pred ccccc-CCHHH
Q 024296 246 GHACC-FEEEE 255 (269)
Q Consensus 246 GHG~~-~~~~l 255 (269)
.=.+. +||.+
T Consensus 219 NlSv~aLDpk~ 229 (414)
T COG2100 219 NLSVDALDPKL 229 (414)
T ss_pred EeecccCCHHH
Confidence 98886 47653
No 407
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.54 E-value=4.8e+02 Score=24.36 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=33.4
Q ss_pred CCceeeecCCCCChhHHHHHHhcCCCcccccccC----CHHHHHHHHh
Q 024296 218 GLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF----EEEEWRKLKS 261 (269)
Q Consensus 218 gl~~t~HAGE~~~~e~i~~ai~l~a~RIGHG~~~----~~~l~~~l~~ 261 (269)
++|+++|-|=..+.+.++.++..|+.-|-=++.+ .+.+.+++.+
T Consensus 242 ~~pLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Te~~~A~~~~~~~~~~~ 289 (340)
T cd00453 242 SLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKA 289 (340)
T ss_pred CCceEEeCCCCCCHHHHHHHHHcCCeEEEcccHHHHHHHHHHHHHHHh
Confidence 6889999998888899999999998888777653 2344455543
No 408
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.44 E-value=5.5e+02 Score=22.00 Aligned_cols=56 Identities=11% Similarity=-0.021 Sum_probs=40.1
Q ss_pred CceEEEecCCCCC------------CCChhhHHHHHHHHHHcCCceeeecCCCCChhHHHHHHhcCCCccc
Q 024296 188 LGVVGIDLSGNPT------------KGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG 246 (269)
Q Consensus 188 ~~vvGidl~G~E~------------~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~e~i~~ai~l~a~RIG 246 (269)
+.++|.+.+=+.. --+|..=.++.+.|++.|+++..=+ .++.++..|.++|++-|+
T Consensus 67 ~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iPG~---~T~~E~~~A~~~Gad~vk 134 (213)
T PRK06552 67 EVLIGAGTVLDAVTARLAILAGAQFIVSPSFNRETAKICNLYQIPYLPGC---MTVTEIVTALEAGSEIVK 134 (213)
T ss_pred CeEEeeeeCCCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEECCc---CCHHHHHHHHHcCCCEEE
Confidence 5689998853322 1233344467888999999987744 468889999999999887
No 409
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=20.25 E-value=6.4e+02 Score=22.69 Aligned_cols=57 Identities=23% Similarity=0.195 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCC
Q 024296 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIP 229 (269)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (269)
.+.+...++++.+.+. +.++++.+...++.- ..+..+.++..++.|+...++-|=-+
T Consensus 91 l~~~~L~~l~~~i~~~--~~~~~isi~trpd~l-~~e~l~~L~~l~~~G~~~~i~lGlQS 147 (302)
T TIGR01212 91 APVEVLKEMYEQALSY--DDVVGLSVGTRPDCV-PDEVLDLLAEYVERGYEVWVELGLQT 147 (302)
T ss_pred CCHHHHHHHHHHHhCC--CCEEEEEEEecCCcC-CHHHHHHHHHhhhCCceEEEEEccCc
Confidence 4677788888877763 458888776655543 24466777777778887667766333
No 410
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=20.16 E-value=3.5e+02 Score=26.00 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=14.7
Q ss_pred hhHHHHHHhcCCCcccccccC-CHHHHHHH
Q 024296 231 KEEIQSMLDFLPQRIGHACCF-EEEEWRKL 259 (269)
Q Consensus 231 ~e~i~~ai~l~a~RIGHG~~~-~~~l~~~l 259 (269)
++.+..+.+.|..||.=|++. ++++++.+
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l 192 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRA 192 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHh
Confidence 343444444566666666653 44444443
Done!