Query 024297
Match_columns 269
No_of_seqs 181 out of 1765
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:32:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0111 SerA Phosphoglycerate 100.0 1.1E-50 2.4E-55 368.6 20.4 234 11-269 2-240 (324)
2 PLN02928 oxidoreductase family 100.0 4.1E-50 8.9E-55 369.2 24.3 257 7-269 13-269 (347)
3 PRK08410 2-hydroxyacid dehydro 100.0 3.6E-50 7.8E-55 364.8 23.2 199 46-269 33-239 (311)
4 PRK15409 bifunctional glyoxyla 100.0 4.4E-50 9.4E-55 365.6 19.9 231 12-269 2-243 (323)
5 PRK06487 glycerate dehydrogena 100.0 2.8E-49 6E-54 359.9 24.0 229 14-269 2-240 (317)
6 PRK06932 glycerate dehydrogena 100.0 1.4E-49 3E-54 361.3 21.9 199 45-269 34-240 (314)
7 COG1052 LdhA Lactate dehydroge 100.0 3.7E-49 8E-54 358.4 22.5 199 48-269 37-243 (324)
8 PRK11790 D-3-phosphoglycerate 100.0 6.9E-48 1.5E-52 361.3 20.3 237 5-269 3-246 (409)
9 PRK13243 glyoxylate reductase; 100.0 9.4E-47 2E-51 345.4 19.3 230 13-269 3-247 (333)
10 PLN02306 hydroxypyruvate reduc 100.0 5.6E-45 1.2E-49 338.3 23.0 250 9-269 12-279 (386)
11 PLN03139 formate dehydrogenase 100.0 1.5E-45 3.2E-50 341.4 18.2 201 47-269 89-298 (386)
12 PRK07574 formate dehydrogenase 100.0 6.5E-45 1.4E-49 337.3 20.7 201 47-269 82-291 (385)
13 KOG0068 D-3-phosphoglycerate d 100.0 3.7E-45 7.9E-50 323.8 16.9 231 12-269 6-243 (406)
14 PRK13581 D-3-phosphoglycerate 100.0 2.7E-44 5.8E-49 347.0 21.9 230 13-269 1-237 (526)
15 PRK12480 D-lactate dehydrogena 100.0 3.5E-44 7.5E-49 327.9 21.1 232 12-269 1-241 (330)
16 TIGR01327 PGDH D-3-phosphoglyc 100.0 4.4E-44 9.6E-49 345.4 21.6 202 45-269 30-236 (525)
17 PRK15469 ghrA bifunctional gly 100.0 2.2E-42 4.9E-47 313.6 22.0 227 14-269 2-233 (312)
18 PRK15438 erythronate-4-phospha 100.0 4.3E-42 9.4E-47 317.3 22.7 209 13-269 1-214 (378)
19 PRK06436 glycerate dehydrogena 100.0 1.4E-41 3E-46 306.9 22.8 215 14-269 2-216 (303)
20 PRK08605 D-lactate dehydrogena 100.0 2.1E-41 4.5E-46 310.1 22.1 221 25-269 13-243 (332)
21 PRK00257 erythronate-4-phospha 100.0 2.6E-41 5.7E-46 312.9 22.5 209 13-269 1-214 (381)
22 KOG0069 Glyoxylate/hydroxypyru 100.0 1.7E-41 3.7E-46 305.8 15.7 199 49-269 54-260 (336)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 3.2E-33 6.9E-38 234.8 10.5 130 121-269 1-134 (178)
24 KOG0067 Transcription factor C 99.9 1.2E-22 2.5E-27 182.7 8.2 184 63-269 82-276 (435)
25 TIGR02853 spore_dpaA dipicolin 99.8 3.2E-20 7E-25 166.9 13.9 168 52-264 51-242 (287)
26 PTZ00075 Adenosylhomocysteinas 99.8 1.9E-18 4.1E-23 163.1 13.3 146 83-265 198-344 (476)
27 PRK08306 dipicolinate synthase 99.7 1.7E-15 3.6E-20 137.0 15.6 173 50-263 50-242 (296)
28 PF00389 2-Hacid_dh: D-isomer 99.6 1.9E-16 4.2E-21 126.6 5.7 98 15-120 1-101 (133)
29 PRK13403 ketol-acid reductoiso 99.5 7.7E-15 1.7E-19 132.4 6.6 93 149-261 12-105 (335)
30 PLN02494 adenosylhomocysteinas 99.5 8.6E-14 1.9E-18 131.4 9.3 99 149-269 250-349 (477)
31 TIGR00936 ahcY adenosylhomocys 99.4 1.5E-12 3.2E-17 121.9 7.9 98 149-268 191-289 (406)
32 PRK05476 S-adenosyl-L-homocyst 99.4 3.3E-12 7.1E-17 120.2 10.3 147 83-266 156-303 (425)
33 PF00670 AdoHcyase_NAD: S-aden 99.2 1.3E-11 2.9E-16 101.2 6.1 95 148-264 18-112 (162)
34 PF03446 NAD_binding_2: NAD bi 99.2 9.1E-12 2E-16 103.0 2.8 91 154-262 2-94 (163)
35 PRK05479 ketol-acid reductoiso 99.2 2.3E-11 4.9E-16 111.1 5.6 92 149-259 13-105 (330)
36 cd00401 AdoHcyase S-adenosyl-L 99.1 1.4E-10 3.1E-15 108.9 7.6 96 148-266 197-293 (413)
37 COG2084 MmsB 3-hydroxyisobutyr 99.1 1.2E-10 2.5E-15 104.2 5.8 92 154-263 1-96 (286)
38 TIGR01505 tartro_sem_red 2-hyd 99.0 2.7E-10 5.9E-15 102.6 6.2 93 155-266 1-97 (291)
39 PRK11559 garR tartronate semia 99.0 5.2E-10 1.1E-14 100.9 5.9 94 154-266 3-100 (296)
40 PRK05225 ketol-acid reductoiso 99.0 6.9E-10 1.5E-14 104.2 6.2 96 149-260 32-129 (487)
41 TIGR00518 alaDH alanine dehydr 99.0 7.8E-09 1.7E-13 96.4 13.2 193 55-262 66-267 (370)
42 PRK15461 NADH-dependent gamma- 98.9 1.5E-09 3.2E-14 98.3 6.4 95 154-266 2-99 (296)
43 PRK12490 6-phosphogluconate de 98.9 1.9E-09 4E-14 97.7 6.5 92 155-266 2-98 (299)
44 PF07991 IlvN: Acetohydroxy ac 98.9 8E-10 1.7E-14 90.4 3.4 91 151-260 2-93 (165)
45 TIGR00465 ilvC ketol-acid redu 98.9 3.4E-09 7.4E-14 96.6 6.5 97 151-267 1-98 (314)
46 PLN02712 arogenate dehydrogena 98.8 3.8E-09 8.2E-14 105.2 6.5 98 147-265 363-463 (667)
47 PRK14619 NAD(P)H-dependent gly 98.8 8.8E-09 1.9E-13 93.6 7.1 83 152-265 3-85 (308)
48 PRK09599 6-phosphogluconate de 98.8 7.7E-09 1.7E-13 93.7 6.6 92 155-266 2-98 (301)
49 COG0499 SAM1 S-adenosylhomocys 98.8 1.3E-08 2.8E-13 92.4 7.2 93 149-263 205-297 (420)
50 PRK14189 bifunctional 5,10-met 98.7 3.9E-08 8.5E-13 88.1 9.0 78 148-263 153-231 (285)
51 PLN02256 arogenate dehydrogena 98.7 1.7E-08 3.6E-13 91.7 6.0 94 152-264 35-129 (304)
52 PLN02350 phosphogluconate dehy 98.7 1.6E-08 3.6E-13 97.1 5.8 100 154-264 7-109 (493)
53 PRK15059 tartronate semialdehy 98.7 2.1E-08 4.6E-13 90.6 6.0 88 155-262 2-93 (292)
54 PF03807 F420_oxidored: NADP o 98.7 6.3E-09 1.4E-13 78.0 1.8 89 155-264 1-96 (96)
55 TIGR00561 pntA NAD(P) transhyd 98.7 5.1E-07 1.1E-11 87.0 15.2 200 55-262 64-284 (511)
56 TIGR00872 gnd_rel 6-phosphoglu 98.7 1.4E-08 2.9E-13 92.0 4.0 92 154-264 1-95 (298)
57 cd01080 NAD_bind_m-THF_DH_Cycl 98.7 1.2E-07 2.6E-12 78.9 9.1 82 149-268 40-122 (168)
58 PF01488 Shikimate_DH: Shikima 98.7 1.7E-08 3.7E-13 80.9 3.5 106 149-268 8-115 (135)
59 PRK14194 bifunctional 5,10-met 98.6 1.3E-07 2.8E-12 85.2 9.2 77 148-262 154-231 (301)
60 KOG0409 Predicted dehydrogenas 98.6 3.5E-08 7.5E-13 87.8 5.0 93 150-261 32-129 (327)
61 TIGR01692 HIBADH 3-hydroxyisob 98.6 2.8E-08 6.1E-13 89.5 4.6 86 158-262 1-90 (288)
62 PLN02858 fructose-bisphosphate 98.6 4E-08 8.7E-13 104.7 6.3 92 152-262 3-98 (1378)
63 PLN02858 fructose-bisphosphate 98.6 3.6E-08 7.9E-13 105.0 5.9 93 153-263 324-419 (1378)
64 PLN02712 arogenate dehydrogena 98.6 4.5E-08 9.8E-13 97.6 5.6 93 149-262 48-143 (667)
65 PTZ00142 6-phosphogluconate de 98.6 6.6E-08 1.4E-12 92.7 5.8 100 154-265 2-104 (470)
66 cd01075 NAD_bind_Leu_Phe_Val_D 98.5 1.1E-07 2.3E-12 81.4 5.5 95 148-266 23-119 (200)
67 PF01210 NAD_Gly3P_dh_N: NAD-d 98.5 3.5E-08 7.5E-13 81.1 2.1 105 155-264 1-105 (157)
68 KOG1370 S-adenosylhomocysteine 98.5 1.8E-07 4E-12 83.3 6.8 93 150-264 211-303 (434)
69 PLN02545 3-hydroxybutyryl-CoA 98.5 6.9E-08 1.5E-12 87.1 4.1 108 154-263 5-121 (295)
70 PRK14175 bifunctional 5,10-met 98.5 3.9E-07 8.5E-12 81.7 8.8 78 148-263 153-231 (286)
71 PRK07417 arogenate dehydrogena 98.5 1.1E-07 2.3E-12 85.3 4.8 90 155-262 2-91 (279)
72 PRK11199 tyrA bifunctional cho 98.5 4.7E-07 1E-11 84.6 9.2 79 152-263 97-176 (374)
73 TIGR00873 gnd 6-phosphoglucona 98.5 1.3E-07 2.8E-12 90.6 5.4 97 155-264 1-100 (467)
74 PRK09260 3-hydroxybutyryl-CoA 98.5 1E-07 2.2E-12 85.9 3.8 109 154-263 2-119 (288)
75 PLN02688 pyrroline-5-carboxyla 98.5 2.2E-07 4.8E-12 82.4 5.8 90 154-264 1-97 (266)
76 cd01065 NAD_bind_Shikimate_DH 98.5 3.6E-07 7.8E-12 74.2 6.6 97 150-263 16-117 (155)
77 COG0686 Ald Alanine dehydrogen 98.5 2.4E-07 5.3E-12 82.9 5.7 108 149-267 164-275 (371)
78 PRK12491 pyrroline-5-carboxyla 98.5 1.6E-07 3.6E-12 84.0 4.5 95 154-268 3-103 (272)
79 PRK06545 prephenate dehydrogen 98.4 2.2E-07 4.7E-12 86.4 5.1 96 154-263 1-96 (359)
80 PRK14188 bifunctional 5,10-met 98.4 8.5E-07 1.8E-11 80.1 8.5 76 148-262 153-230 (296)
81 PRK08818 prephenate dehydrogen 98.4 4.2E-07 9.1E-12 84.6 6.7 83 151-262 2-88 (370)
82 PRK07502 cyclohexadienyl dehyd 98.4 2.7E-07 5.8E-12 83.8 5.2 94 153-263 6-101 (307)
83 PRK07679 pyrroline-5-carboxyla 98.4 4E-07 8.7E-12 81.6 5.9 95 152-265 2-102 (279)
84 PF02882 THF_DHG_CYH_C: Tetrah 98.4 2.7E-06 5.7E-11 70.2 10.2 78 148-263 31-109 (160)
85 PRK09424 pntA NAD(P) transhydr 98.4 3E-06 6.4E-11 81.9 11.9 199 55-263 65-286 (509)
86 PRK14618 NAD(P)H-dependent gly 98.4 4.7E-07 1E-11 82.9 6.0 103 153-264 4-106 (328)
87 PRK14179 bifunctional 5,10-met 98.4 1.6E-06 3.4E-11 77.7 9.0 77 148-262 153-230 (284)
88 PRK08655 prephenate dehydrogen 98.4 4.9E-07 1.1E-11 86.2 5.8 90 154-263 1-93 (437)
89 TIGR01035 hemA glutamyl-tRNA r 98.4 4.7E-07 1E-11 85.8 5.4 102 150-268 177-283 (417)
90 PRK07066 3-hydroxybutyryl-CoA 98.4 3.7E-07 8E-12 83.5 4.4 110 154-264 8-121 (321)
91 PRK10792 bifunctional 5,10-met 98.4 1.9E-06 4.1E-11 77.2 8.7 77 148-262 154-231 (285)
92 PF01262 AlaDh_PNT_C: Alanine 98.3 4.5E-07 9.7E-12 75.3 4.2 108 149-262 16-139 (168)
93 PRK00094 gpsA NAD(P)H-dependen 98.3 4.8E-07 1E-11 82.3 4.5 106 154-264 2-107 (325)
94 PLN00203 glutamyl-tRNA reducta 98.3 1.2E-06 2.6E-11 85.0 7.1 104 150-267 263-374 (519)
95 PRK11064 wecC UDP-N-acetyl-D-m 98.3 1.1E-06 2.4E-11 83.2 6.4 93 154-262 4-119 (415)
96 TIGR03026 NDP-sugDHase nucleot 98.3 9.4E-07 2E-11 83.5 5.9 106 154-262 1-120 (411)
97 PRK07530 3-hydroxybutyryl-CoA 98.3 6.1E-07 1.3E-11 80.8 4.4 107 154-262 5-120 (292)
98 COG0059 IlvC Ketol-acid reduct 98.3 9.4E-07 2E-11 78.9 5.4 91 150-259 15-106 (338)
99 PRK14192 bifunctional 5,10-met 98.3 3E-06 6.5E-11 76.2 8.5 78 148-263 154-232 (283)
100 COG2085 Predicted dinucleotide 98.3 1.6E-06 3.5E-11 74.0 6.3 92 154-262 2-93 (211)
101 PRK07531 bifunctional 3-hydrox 98.3 1E-06 2.2E-11 85.3 5.2 110 154-264 5-118 (495)
102 PRK14191 bifunctional 5,10-met 98.3 6.1E-06 1.3E-10 74.0 9.8 78 148-263 152-230 (285)
103 PRK08507 prephenate dehydrogen 98.3 1.4E-06 3E-11 78.0 5.5 88 155-262 2-91 (275)
104 PRK14176 bifunctional 5,10-met 98.2 5.6E-06 1.2E-10 74.3 9.0 77 148-262 159-236 (287)
105 PRK14178 bifunctional 5,10-met 98.2 4E-06 8.7E-11 74.9 8.0 77 148-262 147-224 (279)
106 COG0373 HemA Glutamyl-tRNA red 98.2 3.1E-06 6.8E-11 79.3 7.2 104 149-268 174-280 (414)
107 PRK06035 3-hydroxyacyl-CoA deh 98.2 1.3E-06 2.7E-11 78.8 4.3 112 154-267 4-126 (291)
108 PRK00045 hemA glutamyl-tRNA re 98.2 1.8E-06 4E-11 81.9 5.6 102 150-268 179-286 (423)
109 COG0287 TyrA Prephenate dehydr 98.2 1.4E-06 3E-11 78.2 4.3 96 153-262 3-98 (279)
110 cd05212 NAD_bind_m-THF_DH_Cycl 98.2 1.3E-05 2.8E-10 64.7 9.4 80 148-265 23-103 (140)
111 PRK06130 3-hydroxybutyryl-CoA 98.2 1.7E-06 3.7E-11 78.5 4.5 109 154-264 5-117 (311)
112 PRK07680 late competence prote 98.2 2.3E-06 5.1E-11 76.4 5.0 91 155-265 2-99 (273)
113 PRK08293 3-hydroxybutyryl-CoA 98.2 1.7E-06 3.7E-11 77.9 4.0 107 154-261 4-119 (287)
114 cd05213 NAD_bind_Glutamyl_tRNA 98.1 2.5E-06 5.4E-11 77.8 5.0 102 151-268 176-279 (311)
115 COG0240 GpsA Glycerol-3-phosph 98.1 2.9E-06 6.2E-11 77.2 5.2 107 154-265 2-108 (329)
116 PF10727 Rossmann-like: Rossma 98.1 5.3E-07 1.1E-11 71.6 0.2 91 152-262 9-104 (127)
117 PRK14183 bifunctional 5,10-met 98.1 1.9E-05 4.1E-10 70.6 10.1 77 148-262 152-229 (281)
118 cd01079 NAD_bind_m-THF_DH NAD 98.1 1.9E-05 4E-10 66.9 9.3 95 147-262 56-156 (197)
119 PRK07819 3-hydroxybutyryl-CoA 98.1 3E-06 6.5E-11 76.4 4.5 109 154-264 6-123 (286)
120 cd05191 NAD_bind_amino_acid_DH 98.1 1.9E-05 4.2E-10 58.1 8.0 67 149-262 19-86 (86)
121 PRK05472 redox-sensing transcr 98.1 2.6E-06 5.6E-11 73.5 3.7 123 114-268 61-191 (213)
122 PRK00258 aroE shikimate 5-dehy 98.1 5E-06 1.1E-10 74.6 5.7 102 149-265 119-224 (278)
123 PRK14806 bifunctional cyclohex 98.1 4.2E-06 9.2E-11 84.6 5.5 93 154-263 4-98 (735)
124 PRK15182 Vi polysaccharide bio 98.1 5.6E-06 1.2E-10 78.6 5.8 97 154-262 7-120 (425)
125 COG0345 ProC Pyrroline-5-carbo 98.1 7.8E-06 1.7E-10 72.7 6.2 90 154-267 2-100 (266)
126 PRK06928 pyrroline-5-carboxyla 98.1 4.3E-06 9.2E-11 75.0 4.5 94 154-266 2-102 (277)
127 PRK06129 3-hydroxyacyl-CoA deh 98.0 4E-06 8.8E-11 76.2 4.3 110 154-264 3-120 (308)
128 cd05311 NAD_bind_2_malic_enz N 98.0 4.4E-05 9.5E-10 66.5 10.1 99 148-262 20-128 (226)
129 PRK13302 putative L-aspartate 98.0 6.9E-06 1.5E-10 73.5 5.1 92 152-266 5-102 (271)
130 PRK13940 glutamyl-tRNA reducta 98.0 1.1E-05 2.4E-10 76.4 6.6 101 149-268 177-279 (414)
131 PRK08268 3-hydroxy-acyl-CoA de 98.0 4.3E-06 9.4E-11 81.1 3.9 108 154-263 8-124 (507)
132 cd01078 NAD_bind_H4MPT_DH NADP 98.0 1.4E-05 3E-10 67.7 6.5 112 148-268 23-135 (194)
133 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.0 6E-06 1.3E-10 80.0 4.3 107 154-262 6-121 (503)
134 PRK05808 3-hydroxybutyryl-CoA 98.0 8.1E-06 1.8E-10 73.2 4.7 109 154-264 4-120 (282)
135 COG0190 FolD 5,10-methylene-te 98.0 3.6E-05 7.9E-10 68.5 8.6 77 148-262 151-228 (283)
136 PRK14177 bifunctional 5,10-met 97.9 5.2E-05 1.1E-09 68.0 9.3 77 148-262 154-231 (284)
137 PRK11880 pyrroline-5-carboxyla 97.9 1.1E-05 2.4E-10 71.5 5.0 89 154-264 3-96 (267)
138 TIGR01724 hmd_rel H2-forming N 97.9 1.2E-05 2.7E-10 72.8 5.2 83 165-262 32-116 (341)
139 PRK06476 pyrroline-5-carboxyla 97.9 6.1E-06 1.3E-10 73.1 3.1 89 155-265 2-96 (258)
140 PRK07340 ornithine cyclodeamin 97.9 1.7E-05 3.7E-10 72.1 6.0 90 151-262 123-217 (304)
141 PRK14169 bifunctional 5,10-met 97.9 6.1E-05 1.3E-09 67.5 9.3 77 148-262 151-228 (282)
142 PRK14187 bifunctional 5,10-met 97.9 7.8E-05 1.7E-09 67.2 10.0 77 148-262 155-232 (294)
143 PRK00676 hemA glutamyl-tRNA re 97.9 4.6E-05 9.9E-10 70.0 8.7 96 149-267 170-266 (338)
144 PRK14982 acyl-ACP reductase; P 97.9 3.4E-05 7.4E-10 71.0 7.8 97 148-268 150-252 (340)
145 PRK14172 bifunctional 5,10-met 97.9 6.4E-05 1.4E-09 67.2 9.3 77 148-262 153-230 (278)
146 PRK14186 bifunctional 5,10-met 97.9 6.3E-05 1.4E-09 67.9 9.3 77 148-262 153-230 (297)
147 PRK14173 bifunctional 5,10-met 97.9 6.6E-05 1.4E-09 67.4 9.3 79 148-264 150-229 (287)
148 PRK14170 bifunctional 5,10-met 97.9 6.8E-05 1.5E-09 67.2 9.3 78 148-263 152-230 (284)
149 PRK14190 bifunctional 5,10-met 97.9 5.9E-05 1.3E-09 67.7 8.9 80 148-265 153-233 (284)
150 PRK14171 bifunctional 5,10-met 97.9 9.3E-05 2E-09 66.5 10.1 77 148-262 154-231 (288)
151 PRK14166 bifunctional 5,10-met 97.9 7.4E-05 1.6E-09 67.0 9.3 77 148-262 152-229 (282)
152 TIGR03376 glycerol3P_DH glycer 97.9 1E-05 2.2E-10 74.8 3.8 106 155-265 1-119 (342)
153 TIGR01915 npdG NADPH-dependent 97.9 1.4E-05 2.9E-10 69.2 4.4 102 154-264 1-103 (219)
154 PRK14180 bifunctional 5,10-met 97.9 7.5E-05 1.6E-09 66.9 9.2 77 148-262 153-230 (282)
155 PRK14181 bifunctional 5,10-met 97.9 0.00012 2.6E-09 65.8 10.4 77 148-262 148-229 (287)
156 PRK14182 bifunctional 5,10-met 97.9 0.00012 2.5E-09 65.7 10.3 77 148-262 152-229 (282)
157 TIGR01546 GAPDH-II_archae glyc 97.8 3.4E-05 7.3E-10 70.8 6.4 102 156-261 1-107 (333)
158 PRK14193 bifunctional 5,10-met 97.8 0.00011 2.4E-09 65.9 9.6 78 148-263 153-233 (284)
159 PF03721 UDPG_MGDP_dh_N: UDP-g 97.8 1E-05 2.2E-10 68.4 2.6 105 154-262 1-120 (185)
160 KOG0023 Alcohol dehydrogenase, 97.8 3.4E-05 7.3E-10 69.6 6.0 100 152-263 181-280 (360)
161 PLN02897 tetrahydrofolate dehy 97.8 9.8E-05 2.1E-09 67.7 9.0 77 148-262 209-286 (345)
162 KOG2380 Prephenate dehydrogena 97.8 2E-05 4.4E-10 71.5 4.4 89 152-261 51-142 (480)
163 PLN02616 tetrahydrofolate dehy 97.8 0.0001 2.2E-09 68.0 9.0 77 148-262 226-303 (364)
164 PLN02516 methylenetetrahydrofo 97.8 0.00011 2.4E-09 66.3 9.1 77 148-262 162-239 (299)
165 PRK07634 pyrroline-5-carboxyla 97.8 3.6E-05 7.8E-10 67.3 5.3 94 152-265 3-102 (245)
166 PRK14184 bifunctional 5,10-met 97.8 0.0002 4.3E-09 64.4 9.9 77 148-262 152-233 (286)
167 COG1064 AdhP Zn-dependent alco 97.8 4.7E-05 1E-09 69.8 6.0 96 152-264 166-261 (339)
168 PRK06522 2-dehydropantoate 2-r 97.8 5E-05 1.1E-09 68.3 6.0 102 154-264 1-102 (304)
169 TIGR02371 ala_DH_arch alanine 97.8 6E-05 1.3E-09 69.2 6.6 89 153-262 128-222 (325)
170 PTZ00431 pyrroline carboxylate 97.7 5.8E-05 1.3E-09 67.0 6.0 86 153-264 3-92 (260)
171 PRK14168 bifunctional 5,10-met 97.7 0.0002 4.4E-09 64.6 9.3 77 148-262 156-237 (297)
172 COG1023 Gnd Predicted 6-phosph 97.7 2.9E-05 6.3E-10 67.4 3.6 94 154-262 1-94 (300)
173 PTZ00345 glycerol-3-phosphate 97.7 5.5E-05 1.2E-09 70.4 5.8 109 153-266 11-133 (365)
174 PRK00856 pyrB aspartate carbam 97.7 0.00061 1.3E-08 62.0 12.4 132 95-267 119-270 (305)
175 PRK14185 bifunctional 5,10-met 97.7 0.00023 4.9E-09 64.1 9.5 77 148-262 152-233 (293)
176 PRK15057 UDP-glucose 6-dehydro 97.7 3.5E-05 7.5E-10 72.4 4.4 104 155-262 2-117 (388)
177 PRK08229 2-dehydropantoate 2-r 97.7 4E-05 8.8E-10 70.3 4.7 104 154-264 3-109 (341)
178 PRK06141 ornithine cyclodeamin 97.7 8.5E-05 1.9E-09 67.8 6.6 94 152-262 124-219 (314)
179 PF02737 3HCDH_N: 3-hydroxyacy 97.7 4.4E-06 9.6E-11 70.2 -1.8 108 155-264 1-116 (180)
180 PRK14174 bifunctional 5,10-met 97.7 0.00021 4.6E-09 64.5 8.8 77 148-262 154-235 (295)
181 PRK13304 L-aspartate dehydroge 97.7 4.2E-05 9.2E-10 68.2 4.3 92 154-268 2-98 (265)
182 PRK14167 bifunctional 5,10-met 97.7 0.00029 6.3E-09 63.6 9.4 77 148-262 152-233 (297)
183 TIGR02354 thiF_fam2 thiamine b 97.7 0.00013 2.7E-09 62.5 6.8 108 149-260 17-143 (200)
184 COG1748 LYS9 Saccharopine dehy 97.7 5.9E-05 1.3E-09 70.4 5.1 97 154-262 2-99 (389)
185 PRK12549 shikimate 5-dehydroge 97.6 0.00011 2.4E-09 66.2 6.4 103 150-264 124-229 (284)
186 PRK12439 NAD(P)H-dependent gly 97.6 3.8E-05 8.2E-10 70.9 3.3 106 154-264 8-113 (341)
187 cd05313 NAD_bind_2_Glu_DH NAD( 97.6 0.00031 6.7E-09 62.2 8.4 103 148-266 33-158 (254)
188 PRK08618 ornithine cyclodeamin 97.6 0.00015 3.2E-09 66.6 6.3 95 152-263 126-222 (325)
189 PRK12921 2-dehydropantoate 2-r 97.6 8.4E-05 1.8E-09 67.0 4.5 104 154-264 1-104 (305)
190 TIGR02992 ectoine_eutC ectoine 97.5 0.00018 3.8E-09 66.1 6.5 95 152-262 128-224 (326)
191 COG0026 PurK Phosphoribosylami 97.5 0.00015 3.3E-09 66.7 5.8 69 153-232 1-69 (375)
192 cd01076 NAD_bind_1_Glu_DH NAD( 97.5 0.00026 5.7E-09 61.7 7.1 37 149-185 27-63 (227)
193 PRK09287 6-phosphogluconate de 97.5 8.4E-05 1.8E-09 71.2 4.2 87 164-263 1-90 (459)
194 PRK00779 ornithine carbamoyltr 97.5 0.0014 3E-08 59.7 11.7 138 94-262 115-265 (304)
195 TIGR00670 asp_carb_tr aspartat 97.5 0.0017 3.6E-08 59.0 12.2 141 95-267 113-269 (301)
196 TIGR00507 aroE shikimate 5-deh 97.5 0.00016 3.5E-09 64.5 5.3 98 150-265 114-217 (270)
197 PRK09310 aroDE bifunctional 3- 97.5 0.00013 2.9E-09 70.3 4.7 76 148-237 327-402 (477)
198 PRK12557 H(2)-dependent methyl 97.4 0.00027 5.9E-09 65.3 6.4 86 165-265 32-119 (342)
199 PLN02527 aspartate carbamoyltr 97.4 0.0022 4.7E-08 58.5 12.1 142 95-267 114-272 (306)
200 PRK06823 ornithine cyclodeamin 97.4 0.00033 7.2E-09 64.0 6.5 94 152-262 127-222 (315)
201 PF13241 NAD_binding_7: Putati 97.4 8.5E-05 1.8E-09 56.6 2.2 89 149-262 3-91 (103)
202 PRK14620 NAD(P)H-dependent gly 97.4 0.00015 3.3E-09 66.3 4.1 105 155-264 2-108 (326)
203 cd05211 NAD_bind_Glu_Leu_Phe_V 97.4 0.0011 2.4E-08 57.4 8.9 36 149-184 19-54 (217)
204 TIGR01809 Shik-DH-AROM shikima 97.3 0.00016 3.5E-09 65.0 3.5 80 150-237 122-202 (282)
205 COG0677 WecC UDP-N-acetyl-D-ma 97.3 0.00017 3.6E-09 67.0 3.6 97 154-260 10-126 (436)
206 PF02423 OCD_Mu_crystall: Orni 97.3 0.00027 5.8E-09 64.5 4.9 92 154-264 129-226 (313)
207 TIGR00658 orni_carb_tr ornithi 97.3 0.0034 7.4E-08 57.1 11.9 140 94-262 111-264 (304)
208 PRK12548 shikimate 5-dehydroge 97.3 0.00057 1.2E-08 61.7 6.9 110 150-264 123-238 (289)
209 TIGR02356 adenyl_thiF thiazole 97.3 0.0001 2.2E-09 63.1 1.8 106 142-249 10-134 (202)
210 PRK06046 alanine dehydrogenase 97.3 0.00053 1.1E-08 63.0 6.5 93 153-262 129-223 (326)
211 PRK06718 precorrin-2 dehydroge 97.3 0.00023 4.9E-09 61.0 3.6 40 148-187 5-44 (202)
212 PRK02102 ornithine carbamoyltr 97.3 0.0027 5.9E-08 58.4 10.8 138 94-262 118-273 (331)
213 PRK14031 glutamate dehydrogena 97.3 0.00093 2E-08 63.6 7.9 113 148-266 223-347 (444)
214 PLN02342 ornithine carbamoyltr 97.2 0.0031 6.8E-08 58.3 10.9 138 94-262 157-307 (348)
215 PRK01713 ornithine carbamoyltr 97.2 0.0028 6.1E-08 58.4 10.6 142 93-262 117-275 (334)
216 TIGR01470 cysG_Nterm siroheme 97.2 0.00048 1E-08 59.2 5.0 96 149-262 5-100 (205)
217 PRK09414 glutamate dehydrogena 97.2 0.0012 2.7E-08 62.8 8.3 36 148-183 227-262 (445)
218 PRK02255 putrescine carbamoylt 97.2 0.0037 8.1E-08 57.7 11.2 142 95-262 115-272 (338)
219 PLN02477 glutamate dehydrogena 97.2 0.0016 3.6E-08 61.5 8.7 102 148-266 201-315 (410)
220 COG2423 Predicted ornithine cy 97.2 0.00087 1.9E-08 61.5 6.6 94 153-262 130-225 (330)
221 PRK11891 aspartate carbamoyltr 97.2 0.0041 8.9E-08 59.0 11.2 141 94-262 199-355 (429)
222 PRK06407 ornithine cyclodeamin 97.2 0.00087 1.9E-08 60.9 6.5 90 153-262 117-212 (301)
223 PRK12475 thiamine/molybdopteri 97.1 0.00039 8.5E-09 64.2 3.9 105 142-248 13-138 (338)
224 COG0334 GdhA Glutamate dehydro 97.1 0.00099 2.1E-08 62.3 6.3 102 148-266 202-316 (411)
225 PLN02353 probable UDP-glucose 97.1 0.00051 1.1E-08 66.1 4.5 106 154-262 2-127 (473)
226 COG1712 Predicted dinucleotide 97.1 0.0005 1.1E-08 59.3 3.9 92 154-268 1-97 (255)
227 PRK08291 ectoine utilization p 97.1 0.0011 2.5E-08 60.9 6.4 95 152-262 131-227 (330)
228 PRK06199 ornithine cyclodeamin 97.1 0.00098 2.1E-08 62.5 6.0 100 153-263 155-260 (379)
229 PRK04284 ornithine carbamoyltr 97.1 0.0047 1E-07 56.9 10.4 141 94-262 117-274 (332)
230 PRK05690 molybdopterin biosynt 97.1 0.00065 1.4E-08 59.9 4.4 107 141-249 20-145 (245)
231 PF03435 Saccharop_dh: Sacchar 97.0 0.00054 1.2E-08 64.1 3.8 95 156-261 1-97 (386)
232 cd00757 ThiF_MoeB_HesA_family 97.0 0.00031 6.8E-09 61.1 1.8 104 142-249 10-134 (228)
233 COG0169 AroE Shikimate 5-dehyd 97.0 0.0013 2.9E-08 59.1 5.6 97 149-264 122-228 (283)
234 TIGR01921 DAP-DH diaminopimela 97.0 0.0023 4.9E-08 58.6 7.2 85 154-261 4-90 (324)
235 PRK07688 thiamine/molybdopteri 97.0 0.00062 1.3E-08 62.9 3.6 106 142-249 13-139 (339)
236 PRK06249 2-dehydropantoate 2-r 97.0 0.0014 3.1E-08 59.6 5.9 99 154-262 6-106 (313)
237 PRK13814 pyrB aspartate carbam 97.0 0.013 2.9E-07 53.4 11.9 126 99-262 124-264 (310)
238 smart00859 Semialdhyde_dh Semi 96.9 0.0022 4.7E-08 50.0 6.0 96 155-262 1-99 (122)
239 PRK03515 ornithine carbamoyltr 96.9 0.0074 1.6E-07 55.7 10.3 142 94-262 117-275 (336)
240 PTZ00117 malate dehydrogenase; 96.9 0.0019 4.1E-08 59.1 6.3 75 151-233 3-81 (319)
241 PRK12562 ornithine carbamoyltr 96.9 0.017 3.6E-07 53.3 12.4 142 94-262 117-275 (334)
242 PRK07589 ornithine cyclodeamin 96.9 0.0025 5.4E-08 59.0 7.0 95 153-262 129-225 (346)
243 PRK06019 phosphoribosylaminoim 96.9 0.0015 3.4E-08 60.9 5.7 68 153-231 2-69 (372)
244 COG1250 FadB 3-hydroxyacyl-CoA 96.9 0.00066 1.4E-08 61.7 2.9 110 153-264 3-120 (307)
245 PRK12861 malic enzyme; Reviewe 96.9 0.0093 2E-07 60.4 11.3 131 99-264 157-290 (764)
246 PRK06719 precorrin-2 dehydroge 96.9 0.0015 3.3E-08 53.7 4.8 40 147-186 7-46 (157)
247 PRK08192 aspartate carbamoyltr 96.9 0.015 3.3E-07 53.7 11.7 138 95-262 118-274 (338)
248 PF13460 NAD_binding_10: NADH( 96.9 0.0011 2.3E-08 54.9 3.8 72 156-238 1-73 (183)
249 PF00208 ELFV_dehydrog: Glutam 96.9 0.0017 3.8E-08 57.2 5.3 35 149-183 28-62 (244)
250 PRK07232 bifunctional malic en 96.9 0.013 2.8E-07 59.4 11.9 132 98-264 152-286 (752)
251 PRK01710 murD UDP-N-acetylmura 96.8 0.0021 4.6E-08 61.6 6.0 38 150-187 11-48 (458)
252 PRK12862 malic enzyme; Reviewe 96.8 0.012 2.7E-07 59.7 11.7 131 99-264 161-294 (763)
253 PF00185 OTCace: Aspartate/orn 96.8 0.0063 1.4E-07 50.0 8.0 104 152-262 1-120 (158)
254 TIGR03316 ygeW probable carbam 96.8 0.015 3.2E-07 54.1 11.3 139 98-262 134-313 (357)
255 PF01408 GFO_IDH_MocA: Oxidore 96.8 0.0011 2.4E-08 51.1 3.3 64 155-235 2-72 (120)
256 cd05312 NAD_bind_1_malic_enz N 96.8 0.015 3.2E-07 52.2 10.8 121 116-264 4-142 (279)
257 PF01118 Semialdhyde_dh: Semia 96.8 0.0031 6.7E-08 49.3 5.5 93 155-263 1-98 (121)
258 PRK14030 glutamate dehydrogena 96.8 0.0064 1.4E-07 58.0 8.5 35 148-182 223-257 (445)
259 PTZ00079 NADP-specific glutama 96.8 0.0095 2.1E-07 56.8 9.7 36 148-183 232-267 (454)
260 COG0540 PyrB Aspartate carbamo 96.8 0.0073 1.6E-07 54.5 8.3 151 75-262 103-272 (316)
261 PRK14027 quinate/shikimate deh 96.7 0.0036 7.9E-08 56.4 6.4 104 150-263 124-230 (283)
262 PRK11730 fadB multifunctional 96.7 0.0011 2.4E-08 67.1 3.2 109 154-264 314-430 (715)
263 PRK05600 thiamine biosynthesis 96.7 0.0017 3.7E-08 60.7 3.9 114 134-249 22-154 (370)
264 cd05291 HicDH_like L-2-hydroxy 96.6 0.008 1.7E-07 54.6 8.0 76 154-235 1-78 (306)
265 TIGR03026 NDP-sugDHase nucleot 96.6 0.011 2.4E-07 55.8 9.1 91 149-261 309-409 (411)
266 PRK11154 fadJ multifunctional 96.6 0.0012 2.5E-08 66.9 2.6 109 154-264 310-427 (708)
267 COG0569 TrkA K+ transport syst 96.6 0.0012 2.7E-08 57.4 2.4 76 154-236 1-77 (225)
268 PLN02520 bifunctional 3-dehydr 96.6 0.0044 9.6E-08 60.6 6.4 97 150-263 376-476 (529)
269 TIGR02437 FadB fatty oxidation 96.6 0.0016 3.4E-08 66.0 3.4 108 154-263 314-429 (714)
270 PRK05597 molybdopterin biosynt 96.6 0.0024 5.1E-08 59.4 4.3 107 141-249 16-141 (355)
271 COG1648 CysG Siroheme synthase 96.6 0.0023 5E-08 55.1 3.8 97 148-262 7-103 (210)
272 cd00762 NAD_bind_malic_enz NAD 96.5 0.027 5.9E-07 49.8 10.4 121 116-264 4-143 (254)
273 PRK14804 ornithine carbamoyltr 96.5 0.015 3.3E-07 53.1 9.2 110 94-232 114-225 (311)
274 COG5322 Predicted dehydrogenas 96.5 0.01 2.2E-07 52.7 7.6 105 147-269 161-268 (351)
275 TIGR02441 fa_ox_alpha_mit fatt 96.5 0.0013 2.9E-08 66.7 2.3 107 154-262 336-450 (737)
276 TIGR01763 MalateDH_bact malate 96.5 0.011 2.3E-07 53.9 7.9 75 154-234 2-78 (305)
277 cd01486 Apg7 Apg7 is an E1-lik 96.5 0.003 6.5E-08 57.2 4.1 104 155-264 1-142 (307)
278 PRK00683 murD UDP-N-acetylmura 96.5 0.0095 2.1E-07 56.4 7.8 35 153-187 3-37 (418)
279 PRK00048 dihydrodipicolinate r 96.5 0.008 1.7E-07 53.3 6.8 63 154-234 2-69 (257)
280 TIGR02355 moeB molybdopterin s 96.5 0.0046 1E-07 54.3 5.2 100 148-249 19-137 (240)
281 PRK13376 pyrB bifunctional asp 96.5 0.029 6.4E-07 54.6 11.0 130 102-262 143-293 (525)
282 PRK08328 hypothetical protein; 96.4 0.0057 1.2E-07 53.4 5.3 102 143-246 17-138 (231)
283 TIGR02440 FadJ fatty oxidation 96.4 0.0031 6.7E-08 63.7 4.1 109 154-264 305-422 (699)
284 TIGR01381 E1_like_apg7 E1-like 96.4 0.0042 9.2E-08 61.4 4.8 109 149-263 334-481 (664)
285 PRK06223 malate dehydrogenase; 96.4 0.015 3.3E-07 52.6 8.2 35 154-188 3-38 (307)
286 PRK06444 prephenate dehydrogen 96.4 0.006 1.3E-07 52.1 5.1 27 155-181 2-29 (197)
287 TIGR01850 argC N-acetyl-gamma- 96.3 0.011 2.4E-07 54.7 7.2 96 154-262 1-99 (346)
288 PRK04207 glyceraldehyde-3-phos 96.3 0.012 2.6E-07 54.5 7.3 30 155-184 3-33 (341)
289 PRK08762 molybdopterin biosynt 96.3 0.0045 9.8E-08 57.9 4.5 107 142-249 124-248 (376)
290 PF03949 Malic_M: Malic enzyme 96.3 0.023 5E-07 50.3 8.6 121 116-264 4-143 (255)
291 PRK08644 thiamine biosynthesis 96.3 0.0063 1.4E-07 52.5 4.9 39 147-185 22-61 (212)
292 PRK09880 L-idonate 5-dehydroge 96.3 0.0096 2.1E-07 54.5 6.4 95 152-263 169-267 (343)
293 PRK07411 hypothetical protein; 96.3 0.0045 9.8E-08 58.3 4.2 109 143-254 28-155 (390)
294 PRK12749 quinate/shikimate deh 96.3 0.0065 1.4E-07 54.9 5.1 112 149-264 120-235 (288)
295 PF01113 DapB_N: Dihydrodipico 96.3 0.0073 1.6E-07 47.5 4.7 68 155-233 2-75 (124)
296 PLN02948 phosphoribosylaminoim 96.3 0.0094 2E-07 58.9 6.5 75 149-234 18-92 (577)
297 COG1004 Ugd Predicted UDP-gluc 96.3 0.0094 2E-07 55.6 6.0 105 154-261 1-119 (414)
298 PF03720 UDPG_MGDP_dh_C: UDP-g 96.2 0.0079 1.7E-07 46.0 4.6 84 163-264 17-102 (106)
299 TIGR01161 purK phosphoribosyla 96.2 0.007 1.5E-07 55.9 5.1 66 155-231 1-66 (352)
300 PRK13301 putative L-aspartate 96.2 0.0094 2E-07 53.0 5.5 92 154-268 3-99 (267)
301 PRK08306 dipicolinate synthase 96.2 0.03 6.5E-07 50.7 8.9 89 152-263 1-101 (296)
302 PRK03369 murD UDP-N-acetylmura 96.2 0.011 2.3E-07 57.4 6.3 36 151-186 10-45 (488)
303 PRK07200 aspartate/ornithine c 96.1 0.06 1.3E-06 50.8 10.9 137 100-262 153-330 (395)
304 COG3288 PntA NAD/NADP transhyd 96.1 0.013 2.9E-07 52.9 6.2 111 148-262 159-281 (356)
305 PRK00066 ldh L-lactate dehydro 96.1 0.0082 1.8E-07 54.9 4.9 37 152-188 5-43 (315)
306 PRK09496 trkA potassium transp 96.1 0.0045 9.7E-08 58.9 3.3 75 154-236 1-76 (453)
307 COG0281 SfcA Malic enzyme [Ene 96.1 0.037 8E-07 52.0 9.1 132 97-262 165-300 (432)
308 PRK14106 murD UDP-N-acetylmura 96.1 0.011 2.3E-07 56.4 5.8 37 150-186 2-38 (450)
309 PRK10637 cysG siroheme synthas 96.0 0.0081 1.8E-07 57.7 4.7 97 148-262 7-103 (457)
310 PLN02353 probable UDP-glucose 96.0 0.029 6.3E-07 54.2 8.4 114 149-265 320-449 (473)
311 PF02558 ApbA: Ketopantoate re 96.0 0.0019 4.2E-08 52.0 0.3 100 156-261 1-100 (151)
312 COG0362 Gnd 6-phosphogluconate 96.0 0.0092 2E-07 55.6 4.7 96 154-262 4-102 (473)
313 KOG2711 Glycerol-3-phosphate d 96.0 0.017 3.8E-07 52.7 6.3 111 150-265 18-142 (372)
314 PRK05086 malate dehydrogenase; 95.9 0.053 1.2E-06 49.5 9.4 75 154-235 1-79 (312)
315 PRK07231 fabG 3-ketoacyl-(acyl 95.9 0.014 2.9E-07 50.4 5.3 39 150-188 2-41 (251)
316 PLN02968 Probable N-acetyl-gam 95.9 0.016 3.4E-07 54.5 5.8 95 151-262 36-134 (381)
317 PRK04523 N-acetylornithine car 95.8 0.078 1.7E-06 48.9 10.1 138 94-262 132-294 (335)
318 PRK13303 L-aspartate dehydroge 95.8 0.017 3.7E-07 51.5 5.5 68 154-235 2-71 (265)
319 cd05292 LDH_2 A subgroup of L- 95.8 0.015 3.2E-07 53.0 5.2 75 154-236 1-78 (308)
320 PRK14805 ornithine carbamoyltr 95.8 0.13 2.9E-06 46.7 11.3 134 95-262 111-261 (302)
321 COG0771 MurD UDP-N-acetylmuram 95.8 0.019 4.1E-07 54.9 5.8 38 151-188 5-42 (448)
322 PRK12550 shikimate 5-dehydroge 95.7 0.0089 1.9E-07 53.6 3.4 89 153-263 122-217 (272)
323 cd01487 E1_ThiF_like E1_ThiF_l 95.7 0.011 2.3E-07 49.5 3.6 92 155-249 1-111 (174)
324 TIGR03366 HpnZ_proposed putati 95.7 0.025 5.5E-07 50.3 6.2 96 152-262 120-218 (280)
325 cd08230 glucose_DH Glucose deh 95.7 0.021 4.5E-07 52.5 5.8 95 151-263 171-270 (355)
326 PRK06270 homoserine dehydrogen 95.7 0.034 7.3E-07 51.4 7.1 30 154-183 3-42 (341)
327 PRK00141 murD UDP-N-acetylmura 95.7 0.016 3.5E-07 55.9 5.2 38 149-186 11-48 (473)
328 PRK00436 argC N-acetyl-gamma-g 95.6 0.029 6.3E-07 51.9 6.5 94 154-262 3-99 (343)
329 cd05293 LDH_1 A subgroup of L- 95.6 0.054 1.2E-06 49.5 8.2 36 153-188 3-40 (312)
330 PRK07878 molybdopterin biosynt 95.6 0.011 2.5E-07 55.6 3.8 103 143-249 32-155 (392)
331 PF02153 PDH: Prephenate dehyd 95.6 0.0047 1E-07 54.8 1.2 77 168-262 1-79 (258)
332 PRK05562 precorrin-2 dehydroge 95.6 0.013 2.9E-07 50.9 3.9 41 148-188 20-60 (223)
333 PLN02819 lysine-ketoglutarate 95.6 0.031 6.8E-07 58.5 7.2 111 150-262 200-338 (1042)
334 PRK03659 glutathione-regulated 95.6 0.0092 2E-07 59.3 3.1 99 153-263 400-499 (601)
335 PTZ00082 L-lactate dehydrogena 95.6 0.03 6.4E-07 51.4 6.2 38 151-188 4-42 (321)
336 COG2910 Putative NADH-flavin r 95.6 0.028 6E-07 47.4 5.4 72 154-236 1-73 (211)
337 PRK15182 Vi polysaccharide bio 95.6 0.13 2.8E-06 49.1 10.7 97 148-266 309-416 (425)
338 cd00650 LDH_MDH_like NAD-depen 95.5 0.011 2.4E-07 52.4 3.2 73 156-233 1-78 (263)
339 PRK05708 2-dehydropantoate 2-r 95.5 0.012 2.6E-07 53.5 3.4 33 154-186 3-35 (305)
340 cd08237 ribitol-5-phosphate_DH 95.5 0.029 6.3E-07 51.4 6.0 91 152-263 163-257 (341)
341 PLN03129 NADP-dependent malic 95.5 0.17 3.7E-06 49.7 11.4 134 98-264 288-438 (581)
342 PRK04690 murD UDP-N-acetylmura 95.5 0.021 4.5E-07 55.0 5.1 36 151-186 6-41 (468)
343 PF04016 DUF364: Domain of unk 95.5 0.024 5.1E-07 46.1 4.7 84 151-262 9-95 (147)
344 TIGR01202 bchC 2-desacetyl-2-h 95.5 0.022 4.8E-07 51.5 5.0 87 152-262 144-231 (308)
345 PRK08223 hypothetical protein; 95.4 0.013 2.7E-07 52.9 3.2 102 147-249 21-142 (287)
346 PRK10669 putative cation:proto 95.4 0.011 2.4E-07 58.1 3.1 81 154-243 418-499 (558)
347 PLN02586 probable cinnamyl alc 95.4 0.034 7.4E-07 51.4 6.2 97 152-263 183-279 (360)
348 PRK11064 wecC UDP-N-acetyl-D-m 95.4 0.046 1E-06 51.9 7.0 72 148-236 315-397 (415)
349 PRK13529 malate dehydrogenase; 95.4 0.51 1.1E-05 46.3 14.1 163 74-265 238-420 (563)
350 cd01339 LDH-like_MDH L-lactate 95.3 0.013 2.8E-07 53.1 3.0 32 156-187 1-33 (300)
351 PF02254 TrkA_N: TrkA-N domain 95.3 0.0081 1.8E-07 46.0 1.5 33 156-188 1-33 (116)
352 CHL00194 ycf39 Ycf39; Provisio 95.3 0.028 6.1E-07 50.9 5.2 72 154-234 1-73 (317)
353 PLN00106 malate dehydrogenase 95.3 0.055 1.2E-06 49.7 7.1 76 152-234 17-95 (323)
354 TIGR03649 ergot_EASG ergot alk 95.3 0.041 8.9E-07 48.8 6.1 70 155-236 1-78 (285)
355 PRK11579 putative oxidoreducta 95.3 0.031 6.7E-07 51.5 5.4 65 154-235 5-74 (346)
356 cd05188 MDR Medium chain reduc 95.3 0.068 1.5E-06 46.1 7.3 98 151-265 133-235 (271)
357 cd05297 GH4_alpha_glucosidase_ 95.2 0.022 4.8E-07 54.2 4.4 78 154-235 1-84 (423)
358 PLN02819 lysine-ketoglutarate 95.2 0.015 3.2E-07 60.9 3.4 77 152-235 568-658 (1042)
359 PRK07806 short chain dehydroge 95.2 0.063 1.4E-06 46.3 6.9 37 150-186 3-40 (248)
360 PRK06128 oxidoreductase; Provi 95.2 0.058 1.2E-06 48.5 6.8 37 150-186 52-89 (300)
361 PRK03562 glutathione-regulated 95.2 0.015 3.3E-07 58.0 3.2 96 153-260 400-496 (621)
362 PF05368 NmrA: NmrA-like famil 95.1 0.017 3.8E-07 49.7 3.1 74 156-236 1-75 (233)
363 cd01492 Aos1_SUMO Ubiquitin ac 95.1 0.017 3.7E-07 49.2 2.8 43 143-185 11-54 (197)
364 PRK01368 murD UDP-N-acetylmura 95.0 0.052 1.1E-06 52.1 6.3 34 151-185 4-37 (454)
365 PRK08300 acetaldehyde dehydrog 95.0 0.075 1.6E-06 48.3 6.9 88 153-262 4-101 (302)
366 PF00056 Ldh_1_N: lactate/mala 95.0 0.012 2.5E-07 47.5 1.5 75 154-234 1-78 (141)
367 TIGR01851 argC_other N-acetyl- 95.0 0.09 1.9E-06 47.9 7.4 76 155-262 3-80 (310)
368 cd08293 PTGR2 Prostaglandin re 95.0 0.059 1.3E-06 49.0 6.3 93 153-262 155-254 (345)
369 TIGR02822 adh_fam_2 zinc-bindi 95.0 0.036 7.7E-07 50.6 4.8 91 152-263 165-255 (329)
370 COG0078 ArgF Ornithine carbamo 95.0 0.36 7.7E-06 43.7 10.9 140 94-262 116-270 (310)
371 cd05294 LDH-like_MDH_nadp A la 95.0 0.12 2.7E-06 47.0 8.2 33 154-186 1-36 (309)
372 PRK09496 trkA potassium transp 94.9 0.019 4.2E-07 54.5 3.0 38 151-188 229-266 (453)
373 PTZ00325 malate dehydrogenase; 94.9 0.096 2.1E-06 48.1 7.4 79 150-235 5-86 (321)
374 PRK02472 murD UDP-N-acetylmura 94.9 0.036 7.8E-07 52.7 4.8 36 151-186 3-38 (447)
375 cd08281 liver_ADH_like1 Zinc-d 94.9 0.061 1.3E-06 49.8 6.2 94 152-262 191-290 (371)
376 PF00070 Pyr_redox: Pyridine n 94.9 0.041 8.9E-07 39.4 3.9 34 155-188 1-34 (80)
377 PLN03209 translocon at the inn 94.8 0.035 7.6E-07 54.6 4.5 85 151-235 78-169 (576)
378 PLN00141 Tic62-NAD(P)-related 94.8 0.042 9E-07 48.0 4.6 40 149-188 13-53 (251)
379 COG0493 GltD NADPH-dependent g 94.8 0.12 2.6E-06 49.7 8.0 88 147-234 117-217 (457)
380 TIGR02825 B4_12hDH leukotriene 94.8 0.061 1.3E-06 48.6 5.7 96 151-263 137-238 (325)
381 PRK11863 N-acetyl-gamma-glutam 94.7 0.091 2E-06 48.0 6.7 77 154-262 3-81 (313)
382 cd08239 THR_DH_like L-threonin 94.7 0.061 1.3E-06 48.9 5.7 97 152-263 163-263 (339)
383 COG1893 ApbA Ketopantoate redu 94.7 0.045 9.8E-07 49.9 4.6 98 154-259 1-98 (307)
384 TIGR01532 E4PD_g-proteo D-eryt 94.7 0.054 1.2E-06 49.8 5.1 30 155-184 1-34 (325)
385 TIGR03451 mycoS_dep_FDH mycoth 94.6 0.092 2E-06 48.3 6.6 95 152-263 176-277 (358)
386 PF00899 ThiF: ThiF family; I 94.6 0.029 6.2E-07 44.5 2.8 35 152-186 1-36 (135)
387 PRK06523 short chain dehydroge 94.6 0.066 1.4E-06 46.6 5.4 40 149-188 5-45 (260)
388 PF13380 CoA_binding_2: CoA bi 94.6 0.041 8.9E-07 42.8 3.5 84 154-262 1-88 (116)
389 PRK12742 oxidoreductase; Provi 94.5 0.12 2.5E-06 44.2 6.7 35 150-184 3-38 (237)
390 TIGR03466 HpnA hopanoid-associ 94.5 0.067 1.5E-06 48.0 5.5 72 154-234 1-73 (328)
391 TIGR01142 purT phosphoribosylg 94.5 0.059 1.3E-06 50.1 5.2 34 155-188 1-34 (380)
392 PRK08265 short chain dehydroge 94.5 0.074 1.6E-06 46.6 5.5 38 150-187 3-41 (261)
393 PRK14874 aspartate-semialdehyd 94.5 0.066 1.4E-06 49.4 5.3 90 153-262 1-94 (334)
394 PRK01390 murD UDP-N-acetylmura 94.5 0.047 1E-06 52.3 4.5 37 150-186 6-42 (460)
395 PLN02662 cinnamyl-alcohol dehy 94.5 0.096 2.1E-06 47.1 6.3 82 152-234 3-85 (322)
396 PRK02006 murD UDP-N-acetylmura 94.4 0.051 1.1E-06 52.7 4.7 36 151-186 5-40 (498)
397 PRK07856 short chain dehydroge 94.4 0.066 1.4E-06 46.5 4.9 38 150-187 3-41 (252)
398 cd05283 CAD1 Cinnamyl alcohol 94.4 0.089 1.9E-06 47.9 6.0 97 151-263 168-264 (337)
399 TIGR03201 dearomat_had 6-hydro 94.4 0.086 1.9E-06 48.4 5.9 37 152-188 166-202 (349)
400 cd08296 CAD_like Cinnamyl alco 94.4 0.13 2.9E-06 46.6 7.1 96 151-263 162-260 (333)
401 TIGR02853 spore_dpaA dipicolin 94.4 0.25 5.5E-06 44.5 8.7 91 153-264 1-101 (287)
402 PLN02896 cinnamyl-alcohol dehy 94.4 0.08 1.7E-06 48.6 5.6 84 147-234 4-88 (353)
403 PRK07523 gluconate 5-dehydroge 94.3 0.044 9.6E-07 47.6 3.7 38 150-187 7-45 (255)
404 cd08295 double_bond_reductase_ 94.3 0.1 2.2E-06 47.5 6.2 96 151-262 150-251 (338)
405 PLN03154 putative allyl alcoho 94.3 0.099 2.2E-06 48.1 6.1 96 151-262 157-258 (348)
406 TIGR02964 xanthine_xdhC xanthi 94.3 0.072 1.6E-06 47.0 4.9 34 154-187 101-134 (246)
407 COG1004 Ugd Predicted UDP-gluc 94.3 0.098 2.1E-06 49.0 5.9 68 151-234 308-385 (414)
408 PRK06701 short chain dehydroge 94.3 0.13 2.8E-06 46.1 6.6 39 149-187 42-81 (290)
409 PLN02383 aspartate semialdehyd 94.3 0.1 2.2E-06 48.4 6.0 89 152-262 6-100 (344)
410 PLN02514 cinnamyl-alcohol dehy 94.2 0.075 1.6E-06 49.0 5.2 98 151-263 179-276 (357)
411 KOG0022 Alcohol dehydrogenase, 94.2 0.042 9.1E-07 49.9 3.3 38 151-188 191-229 (375)
412 PF02629 CoA_binding: CoA bind 94.2 0.067 1.5E-06 40.0 4.0 66 153-235 3-72 (96)
413 KOG0399 Glutamate synthase [Am 94.2 0.19 4.1E-06 52.8 8.2 90 142-236 1773-1881(2142)
414 PLN02602 lactate dehydrogenase 94.2 0.11 2.4E-06 48.2 6.2 35 154-188 38-74 (350)
415 PLN02178 cinnamyl-alcohol dehy 94.2 0.1 2.2E-06 48.7 6.0 96 152-262 178-273 (375)
416 PLN02657 3,8-divinyl protochlo 94.2 0.082 1.8E-06 49.7 5.3 40 148-187 55-95 (390)
417 PLN02740 Alcohol dehydrogenase 94.2 0.14 3.1E-06 47.6 7.0 38 151-188 197-235 (381)
418 cd08255 2-desacetyl-2-hydroxye 94.2 0.064 1.4E-06 47.1 4.4 38 151-188 96-134 (277)
419 cd01491 Ube1_repeat1 Ubiquitin 94.2 0.086 1.9E-06 47.6 5.2 44 143-186 9-53 (286)
420 PRK08269 3-hydroxybutyryl-CoA 94.1 0.038 8.2E-07 50.5 2.9 100 164-264 1-117 (314)
421 PRK06398 aldose dehydrogenase; 94.1 0.11 2.4E-06 45.4 5.8 39 150-188 3-42 (258)
422 PLN02695 GDP-D-mannose-3',5'-e 94.1 0.1 2.2E-06 48.6 5.8 35 152-186 20-55 (370)
423 PRK07985 oxidoreductase; Provi 94.1 0.16 3.5E-06 45.5 6.9 37 150-186 46-83 (294)
424 TIGR02622 CDP_4_6_dhtase CDP-g 94.1 0.092 2E-06 48.1 5.3 38 151-188 2-40 (349)
425 TIGR02818 adh_III_F_hyde S-(hy 94.1 0.12 2.6E-06 47.8 6.2 38 151-188 184-222 (368)
426 PRK04148 hypothetical protein; 94.1 0.06 1.3E-06 43.1 3.5 36 152-188 16-51 (134)
427 PRK06179 short chain dehydroge 94.0 0.096 2.1E-06 45.9 5.2 37 152-188 3-40 (270)
428 PRK09186 flagellin modificatio 94.0 0.08 1.7E-06 45.8 4.6 38 151-188 2-40 (256)
429 cd01338 MDH_choloroplast_like 94.0 0.12 2.5E-06 47.5 5.8 76 154-234 3-87 (322)
430 PLN02214 cinnamoyl-CoA reducta 94.0 0.13 2.9E-06 47.1 6.3 84 150-235 7-91 (342)
431 PRK06392 homoserine dehydrogen 94.0 0.11 2.4E-06 47.8 5.7 29 155-183 2-38 (326)
432 PRK07877 hypothetical protein; 94.0 0.078 1.7E-06 53.7 5.0 99 147-249 101-219 (722)
433 cd08294 leukotriene_B4_DH_like 94.0 0.13 2.7E-06 46.3 6.0 94 151-262 142-241 (329)
434 TIGR01759 MalateDH-SF1 malate 93.9 0.15 3.3E-06 46.8 6.4 76 154-234 4-88 (323)
435 cd01336 MDH_cytoplasmic_cytoso 93.9 0.16 3.4E-06 46.7 6.5 77 155-235 4-88 (325)
436 COG0673 MviM Predicted dehydro 93.9 0.085 1.8E-06 48.0 4.7 66 154-236 4-78 (342)
437 COG1063 Tdh Threonine dehydrog 93.9 0.053 1.1E-06 50.2 3.3 94 155-262 171-269 (350)
438 PLN02780 ketoreductase/ oxidor 93.9 0.15 3.2E-06 46.6 6.2 38 151-188 51-89 (320)
439 cd00300 LDH_like L-lactate deh 93.8 0.14 3.1E-06 46.3 6.0 74 156-235 1-76 (300)
440 PRK07326 short chain dehydroge 93.8 0.068 1.5E-06 45.7 3.7 37 151-187 4-41 (237)
441 PRK15181 Vi polysaccharide bio 93.8 0.12 2.5E-06 47.6 5.4 38 150-187 12-50 (348)
442 PRK06172 short chain dehydroge 93.8 0.069 1.5E-06 46.3 3.7 39 150-188 4-43 (253)
443 cd01485 E1-1_like Ubiquitin ac 93.7 0.043 9.3E-07 46.7 2.3 43 143-185 9-52 (198)
444 PTZ00317 NADP-dependent malic 93.7 0.88 1.9E-05 44.7 11.4 120 114-264 274-418 (559)
445 KOG4230 C1-tetrahydrofolate sy 93.7 0.23 5.1E-06 48.5 7.3 78 148-263 157-235 (935)
446 PRK04308 murD UDP-N-acetylmura 93.7 0.086 1.9E-06 50.3 4.5 37 151-187 3-39 (445)
447 PRK07062 short chain dehydroge 93.7 0.08 1.7E-06 46.3 4.0 40 149-188 4-44 (265)
448 PRK01438 murD UDP-N-acetylmura 93.6 0.082 1.8E-06 50.9 4.4 38 149-186 12-49 (480)
449 PRK07424 bifunctional sterol d 93.6 0.084 1.8E-06 50.0 4.3 80 149-234 174-254 (406)
450 cd08233 butanediol_DH_like (2R 93.6 0.2 4.3E-06 45.8 6.7 97 151-263 171-273 (351)
451 PLN02989 cinnamyl-alcohol dehy 93.6 0.18 4E-06 45.5 6.4 80 152-234 4-86 (325)
452 PRK00421 murC UDP-N-acetylmura 93.6 0.089 1.9E-06 50.5 4.6 37 151-187 5-42 (461)
453 COG2344 AT-rich DNA-binding pr 93.6 0.12 2.7E-06 43.5 4.7 67 155-236 86-157 (211)
454 PRK12367 short chain dehydroge 93.6 0.13 2.8E-06 45.1 5.2 78 149-234 10-88 (245)
455 cd00704 MDH Malate dehydrogena 93.6 0.18 4E-06 46.2 6.4 68 154-234 1-85 (323)
456 PRK10206 putative oxidoreducta 93.6 0.11 2.4E-06 48.0 4.9 67 155-236 3-75 (344)
457 PLN02427 UDP-apiose/xylose syn 93.6 0.16 3.6E-06 47.2 6.2 85 147-233 8-94 (386)
458 PRK05993 short chain dehydroge 93.6 0.093 2E-06 46.4 4.3 37 152-188 3-40 (277)
459 PRK06171 sorbitol-6-phosphate 93.6 0.15 3.3E-06 44.5 5.7 39 150-188 6-45 (266)
460 cd08245 CAD Cinnamyl alcohol d 93.5 0.16 3.4E-06 45.8 5.8 96 151-262 161-256 (330)
461 PLN02240 UDP-glucose 4-epimera 93.5 0.14 3E-06 46.7 5.5 37 150-186 2-39 (352)
462 cd08301 alcohol_DH_plants Plan 93.5 0.2 4.4E-06 46.2 6.6 38 151-188 186-224 (369)
463 PRK08324 short chain dehydroge 93.5 0.092 2E-06 53.0 4.6 41 148-188 417-458 (681)
464 PRK08264 short chain dehydroge 93.5 0.14 3.1E-06 43.8 5.2 39 150-188 3-43 (238)
465 PLN02986 cinnamyl-alcohol dehy 93.4 0.23 5.1E-06 44.8 6.8 83 151-234 3-86 (322)
466 PRK06182 short chain dehydroge 93.4 0.14 3.1E-06 45.0 5.2 36 152-187 2-38 (273)
467 PLN02272 glyceraldehyde-3-phos 93.4 0.083 1.8E-06 50.0 3.8 31 154-184 86-117 (421)
468 KOG2304 3-hydroxyacyl-CoA dehy 93.4 0.057 1.2E-06 47.0 2.4 37 152-188 10-46 (298)
469 PRK12828 short chain dehydroge 93.4 0.098 2.1E-06 44.5 4.0 39 150-188 4-43 (239)
470 COG1086 Predicted nucleoside-d 93.3 0.51 1.1E-05 46.2 9.0 209 9-232 113-332 (588)
471 PRK03803 murD UDP-N-acetylmura 93.3 0.11 2.4E-06 49.5 4.6 35 152-186 5-39 (448)
472 PRK06196 oxidoreductase; Provi 93.3 0.077 1.7E-06 48.0 3.3 39 149-187 22-61 (315)
473 PRK09288 purT phosphoribosylgl 93.2 0.18 3.9E-06 47.1 5.8 36 152-187 11-46 (395)
474 PRK06349 homoserine dehydrogen 93.2 0.13 2.8E-06 49.0 4.9 66 154-235 4-82 (426)
475 KOG2653 6-phosphogluconate deh 93.2 0.063 1.4E-06 49.5 2.6 96 154-262 7-105 (487)
476 cd05290 LDH_3 A subgroup of L- 93.2 0.13 2.8E-06 47.0 4.6 34 155-188 1-36 (307)
477 cd08277 liver_alcohol_DH_like 93.1 0.23 5.1E-06 45.8 6.4 38 151-188 183-221 (365)
478 PF13478 XdhC_C: XdhC Rossmann 93.1 0.087 1.9E-06 42.2 3.0 32 156-187 1-32 (136)
479 PRK14851 hypothetical protein; 93.1 0.093 2E-06 52.9 3.8 42 143-184 33-75 (679)
480 TIGR03589 PseB UDP-N-acetylglu 93.0 0.14 2.9E-06 46.7 4.6 79 151-234 2-83 (324)
481 TIGR00036 dapB dihydrodipicoli 93.0 0.25 5.5E-06 44.0 6.2 71 155-234 3-77 (266)
482 PRK06197 short chain dehydroge 93.0 0.11 2.3E-06 46.8 3.8 47 141-187 4-51 (306)
483 PRK10537 voltage-gated potassi 93.0 0.1 2.3E-06 49.2 3.9 33 153-185 240-272 (393)
484 COG4007 Predicted dehydrogenas 93.0 0.16 3.4E-06 45.1 4.6 83 165-262 33-117 (340)
485 PRK12771 putative glutamate sy 93.0 0.19 4.1E-06 49.6 5.8 46 141-186 125-170 (564)
486 PRK09987 dTDP-4-dehydrorhamnos 93.0 0.18 4E-06 45.3 5.3 60 154-234 1-63 (299)
487 TIGR01758 MDH_euk_cyt malate d 93.0 0.23 4.9E-06 45.7 5.9 77 155-235 1-85 (324)
488 PRK12809 putative oxidoreducta 93.0 0.48 1E-05 47.5 8.7 37 151-187 308-344 (639)
489 cd08292 ETR_like_2 2-enoyl thi 92.9 0.36 7.8E-06 43.1 7.2 95 152-262 139-238 (324)
490 COG0039 Mdh Malate/lactate deh 92.9 0.32 6.9E-06 44.5 6.7 34 154-187 1-36 (313)
491 PF00044 Gp_dh_N: Glyceraldehy 92.9 0.11 2.4E-06 42.4 3.4 32 155-186 2-34 (151)
492 cd08269 Zn_ADH9 Alcohol dehydr 92.9 0.28 6.1E-06 43.5 6.4 96 151-263 128-230 (312)
493 cd08234 threonine_DH_like L-th 92.9 0.2 4.4E-06 45.1 5.5 98 151-265 158-260 (334)
494 TIGR01761 thiaz-red thiazoliny 92.9 0.25 5.4E-06 45.8 6.1 64 154-235 4-72 (343)
495 TIGR01214 rmlD dTDP-4-dehydror 92.8 0.22 4.8E-06 43.9 5.5 57 155-235 1-60 (287)
496 PRK13394 3-hydroxybutyrate deh 92.8 0.15 3.3E-06 44.1 4.5 38 150-187 4-42 (262)
497 PRK03806 murD UDP-N-acetylmura 92.7 0.16 3.5E-06 48.2 4.8 36 151-186 4-39 (438)
498 cd01483 E1_enzyme_family Super 92.7 0.13 2.8E-06 41.1 3.5 31 155-185 1-32 (143)
499 PRK05854 short chain dehydroge 92.7 0.18 4E-06 45.6 4.9 41 148-188 9-50 (313)
500 PLN02827 Alcohol dehydrogenase 92.6 0.3 6.5E-06 45.5 6.4 38 151-188 192-230 (378)
No 1
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-50 Score=368.56 Aligned_cols=234 Identities=27% Similarity=0.368 Sum_probs=199.0
Q ss_pred CcceEEEeCCCCCCchhhHHHHHhcCCCeEEe---eCCCCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccC
Q 024297 11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVD---VVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGL 87 (269)
Q Consensus 11 ~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~ 87 (269)
.+++++...+..+. ..+.+... ...++. ..+.+++.+.++++|++++..++++++.++.+|+||||++.++|+
T Consensus 2 ~~~~vl~~~~~~~~---~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~v~~~~l~~~~~Lk~I~~~g~Gv 77 (324)
T COG0111 2 MMIKVLVTDPLAPD---ALEELLAA-YDVEVPDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGV 77 (324)
T ss_pred CcceeeccCccCHH---HHHHHHhc-cccccccccccchHHHHhhcccCcEEEEecCCCCHHHHhhCCCceEEEEccccc
Confidence 36777877776543 23333333 222222 234455678899999877777999999999999999999999999
Q ss_pred CccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC--CccccccCCEEEEEecCchH
Q 024297 88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIG 165 (269)
Q Consensus 88 d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~g~~vgIiG~G~iG 165 (269)
|++|+++++++||.|+|+|+. |+.+||||+++++|++.|+++.+++.++++.|.. ..+.+|+||||||||+|+||
T Consensus 78 d~id~~~~~~~gi~V~nap~~---na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG 154 (324)
T COG0111 78 DNIDLEAATKRGILVVNAPGG---NAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIG 154 (324)
T ss_pred cccCHHHHhhcCCEEEeCCCc---chHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHH
Confidence 999999999999999999998 8899999999999999999999999999999986 45679999999999999999
Q ss_pred HHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCH
Q 024297 166 VELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSS 245 (269)
Q Consensus 166 ~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~ 245 (269)
+.+|+++++|||+|++||+...+.. ..........+|+++|++||+|++|+|+|++|+++||+
T Consensus 155 ~~va~~l~afgm~v~~~d~~~~~~~-----------------~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~ 217 (324)
T COG0111 155 RAVAKRLKAFGMKVIGYDPYSPRER-----------------AGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINA 217 (324)
T ss_pred HHHHHHHHhCCCeEEEECCCCchhh-----------------hccccceecccHHHHHhhCCEEEEcCCCCcchhcccCH
Confidence 9999999999999999999554421 11122224578999999999999999999999999999
Q ss_pred HHHhhhCCCCcEEEEccCCCCccC
Q 024297 246 SLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 246 ~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
+.|+ +||+|++|||+|||++|||
T Consensus 218 ~~~a-~MK~gailIN~aRG~vVde 240 (324)
T COG0111 218 EELA-KMKPGAILINAARGGVVDE 240 (324)
T ss_pred HHHh-hCCCCeEEEECCCcceecH
Confidence 9999 9999999999999999996
No 2
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=4.1e-50 Score=369.17 Aligned_cols=257 Identities=63% Similarity=1.025 Sum_probs=214.4
Q ss_pred CCCCCcceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCCCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEcccc
Q 024297 7 SSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVG 86 (269)
Q Consensus 7 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG 86 (269)
-|.+.++|||++.+.++....+.++++++++...+...+.+++.+.++++|+++++..+++++.++.+|+||||++.++|
T Consensus 13 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G 92 (347)
T PLN02928 13 HSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICVPKMMRLDADIIARASQMKLIMQFGVG 92 (347)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHhhcCCeeEecCCCHHHHHHHhcCCcEEEECCCCCCHHHHhcCCCceEEEECCcc
Confidence 35666888999988877655566777777776555555666788889999998877678999999999999999999999
Q ss_pred CCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHH
Q 024297 87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGV 166 (269)
Q Consensus 87 ~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~ 166 (269)
+|++|++++.++||.|+|+|++.++|+.+||||+++++|+++|++..+.+.++++.|..+.+.++.||||||||+|+||+
T Consensus 93 ~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~ 172 (347)
T PLN02928 93 LEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGI 172 (347)
T ss_pred cCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHH
Confidence 99999999999999999999975557899999999999999999999999999999987667899999999999999999
Q ss_pred HHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHH
Q 024297 167 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSS 246 (269)
Q Consensus 167 ~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~ 246 (269)
.+|++|++|||+|++|+|+..+..... +.++.+.............+|++++++||+|++|+|+|++|+++||++
T Consensus 173 ~vA~~l~afG~~V~~~dr~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~ 247 (347)
T PLN02928 173 ELAKRLRPFGVKLLATRRSWTSEPEDG-----LLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDE 247 (347)
T ss_pred HHHHHHhhCCCEEEEECCCCChhhhhh-----hccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHH
Confidence 999999999999999999754311100 000000000111111245789999999999999999999999999999
Q ss_pred HHhhhCCCCcEEEEccCCCCccC
Q 024297 247 LSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 247 ~l~~~mk~ga~lIN~~RG~~vde 269 (269)
.|+ +||+|++|||+|||++|||
T Consensus 248 ~l~-~Mk~ga~lINvaRG~lVde 269 (347)
T PLN02928 248 FLS-SMKKGALLVNIARGGLLDY 269 (347)
T ss_pred HHh-cCCCCeEEEECCCccccCH
Confidence 999 9999999999999999996
No 3
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=3.6e-50 Score=364.81 Aligned_cols=199 Identities=22% Similarity=0.275 Sum_probs=181.1
Q ss_pred CCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHH
Q 024297 46 ISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125 (269)
Q Consensus 46 ~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L 125 (269)
.+++.+.++++|+++++..+++++.++.+|+||||++.|+|+|++|+++++++||.|+|+||+ ++.+||||+++++|
T Consensus 33 ~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~VAE~a~~l~L 109 (311)
T PRK08410 33 PEEVIERIKDANIIITNKVVIDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGY---STESVAQHTFAMLL 109 (311)
T ss_pred HHHHHHHhCCCCEEEECCCCCCHHHHhhCCCCeEEEEcccccccccHHHHHhCCCEEEcCCCC---CChHHHHHHHHHHH
Confidence 456778889999988776789999999999999999999999999999999999999999998 88999999999999
Q ss_pred HHhhcHHHHHHHHHhCCCCCC--------ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccc
Q 024297 126 GLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS 197 (269)
Q Consensus 126 ~~~R~~~~~~~~~~~~~w~~~--------~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~ 197 (269)
++.|++..+++.++++.|... .+++|.||||||||+|+||+++|+++++|||+|++|||+....
T Consensus 110 ~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~-------- 181 (311)
T PRK08410 110 SLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK-------- 181 (311)
T ss_pred HHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc--------
Confidence 999999999999999999743 2468999999999999999999999999999999999864321
Q ss_pred hhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297 198 ALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
... ....+|++++++||+|++|+|+|++|+++||++.|+ +||+|++|||+|||++|||
T Consensus 182 ---------~~~----~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~-~Mk~~a~lIN~aRG~vVDe 239 (311)
T PRK08410 182 ---------NEE----YERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELK-LLKDGAILINVGRGGIVNE 239 (311)
T ss_pred ---------ccC----ceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHH-hCCCCeEEEECCCccccCH
Confidence 000 134689999999999999999999999999999999 9999999999999999997
No 4
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=4.4e-50 Score=365.58 Aligned_cols=231 Identities=17% Similarity=0.200 Sum_probs=194.2
Q ss_pred cceEEEeCCCCCCchhhHHHHHhcCCCeEEee----CCCCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccC
Q 024297 12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGL 87 (269)
Q Consensus 12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~ 87 (269)
+++|+++.+..+ .. .+.++...++.+.. .+.+++.+.++++|+++++..++++++++.+|+||||++.|+|+
T Consensus 2 ~~~vl~~~~~~~---~~-~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~l~~~p~Lk~I~~~g~G~ 77 (323)
T PRK15409 2 KPSVILYKALPD---DL-LQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSGEKVDAALLEKMPKLRAASTISVGY 77 (323)
T ss_pred CceEEEeCCCCH---HH-HHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcCCCCCHHHHhhCCCCeEEEECceec
Confidence 478999987532 22 23333332332221 12235667789999988766789999999999999999999999
Q ss_pred CccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC-----ccccccCCEEEEEecC
Q 024297 88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-----TGETLLGKTVFILGFG 162 (269)
Q Consensus 88 d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~-----~~~~l~g~~vgIiG~G 162 (269)
|+||+++++++||+|+|+|++ ++.+||||+++++|++.|++..+++.++++.|... .+.+|.|||+||||+|
T Consensus 78 d~id~~~~~~~gI~V~n~~~~---~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G 154 (323)
T PRK15409 78 DNFDVDALTARKILLMHTPTV---LTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMG 154 (323)
T ss_pred ccccHHHHHHCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEccc
Confidence 999999999999999999998 78999999999999999999999999999999642 4678999999999999
Q ss_pred chHHHHHHHhc-cCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEecCCCcccc
Q 024297 163 NIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTV 240 (269)
Q Consensus 163 ~iG~~~a~~l~-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t~~t~ 240 (269)
+||+++|++++ +|||+|++|+++..+.. ....+ .+.++++++++||+|++|+|+|++|+
T Consensus 155 ~IG~~va~~l~~~fgm~V~~~~~~~~~~~-------------------~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~ 215 (323)
T PRK15409 155 RIGMALAQRAHFGFNMPILYNARRHHKEA-------------------EERFNARYCDLDTLLQESDFVCIILPLTDETH 215 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCchhh-------------------HHhcCcEecCHHHHHHhCCEEEEeCCCChHHh
Confidence 99999999998 99999999998643310 01111 34689999999999999999999999
Q ss_pred CcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297 241 KLCSSSLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 241 ~li~~~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
++||++.|+ +||+|++|||+|||++|||
T Consensus 216 ~li~~~~l~-~mk~ga~lIN~aRG~vVde 243 (323)
T PRK15409 216 HLFGAEQFA-KMKSSAIFINAGRGPVVDE 243 (323)
T ss_pred hccCHHHHh-cCCCCeEEEECCCccccCH
Confidence 999999999 9999999999999999996
No 5
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-49 Score=359.86 Aligned_cols=229 Identities=21% Similarity=0.261 Sum_probs=193.5
Q ss_pred eEEEeCCC-CCCchhhHHHHHhcCCCeEEeeC-CCCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccCCccc
Q 024297 14 RVLFCGPH-FPASHNYTKEYLQNYPSIQVDVV-PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVD 91 (269)
Q Consensus 14 ~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id 91 (269)
||+++... .+......+.+.+.++.+.+... +.+++.+.++++|+++.+..+++++.++++|+||||++.++|+|++|
T Consensus 2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 81 (317)
T PRK06487 2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISNKVALDAAALAAAPQLKLILVAATGTNNVD 81 (317)
T ss_pred eEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEeCCCCCHHHHhhCCCCeEEEEcCccccccC
Confidence 57777653 22111222333334555554332 34667888999998887767899999999999999999999999999
Q ss_pred hhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--------ccccccCCEEEEEecCc
Q 024297 92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGN 163 (269)
Q Consensus 92 ~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--------~~~~l~g~~vgIiG~G~ 163 (269)
++++.++||.|+|+||+ ++.+||||+++++|++.|++..+++.++++.|... .+.+|.||||||||+|+
T Consensus 82 ~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~ 158 (317)
T PRK06487 82 LAAARERGITVCNCQGY---GTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGE 158 (317)
T ss_pred HHHHHHCCCEEEeCCCC---CcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCH
Confidence 99999999999999998 78999999999999999999999999999999743 24689999999999999
Q ss_pred hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcC
Q 024297 164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLC 243 (269)
Q Consensus 164 iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li 243 (269)
||+++|+++++|||+|++|+++... .. ....+|++++++||+|++|+|+|++|+++|
T Consensus 159 IG~~vA~~l~~fgm~V~~~~~~~~~-------------------~~----~~~~~l~ell~~sDiv~l~lPlt~~T~~li 215 (317)
T PRK06487 159 LGGAVARLAEAFGMRVLIGQLPGRP-------------------AR----PDRLPLDELLPQVDALTLHCPLTEHTRHLI 215 (317)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCc-------------------cc----ccccCHHHHHHhCCEEEECCCCChHHhcCc
Confidence 9999999999999999999986322 00 123589999999999999999999999999
Q ss_pred CHHHHhhhCCCCcEEEEccCCCCccC
Q 024297 244 SSSLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 244 ~~~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
|++.|+ +||+|++|||+|||++|||
T Consensus 216 ~~~~~~-~mk~ga~lIN~aRG~vVde 240 (317)
T PRK06487 216 GARELA-LMKPGALLINTARGGLVDE 240 (317)
T ss_pred CHHHHh-cCCCCeEEEECCCccccCH
Confidence 999999 9999999999999999996
No 6
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-49 Score=361.28 Aligned_cols=199 Identities=17% Similarity=0.207 Sum_probs=180.5
Q ss_pred CCCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHH
Q 024297 45 PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124 (269)
Q Consensus 45 ~~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~ 124 (269)
+.+++.+.++++|+++....+++++.++.+|+||||++.++|+|++|++++.++||.|+|+||+ ++.+||||+++++
T Consensus 34 ~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~i~l~ 110 (314)
T PRK06932 34 SAEQTIERAKDADIVITSKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGY---SSTTVPEHVLGMI 110 (314)
T ss_pred ChHHHHHHhCCCcEEEEeCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCC---ChhHHHHHHHHHH
Confidence 4566788899999888766789999999999999999999999999999999999999999998 7899999999999
Q ss_pred HHHhhcHHHHHHHHHhCCCCCC--------ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccccc
Q 024297 125 LGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS 196 (269)
Q Consensus 125 L~~~R~~~~~~~~~~~~~w~~~--------~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~ 196 (269)
|++.|++..+++.++++.|... .++++.||||||||+|+||+++|+++++|||+|++|+++...
T Consensus 111 l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~-------- 182 (314)
T PRK06932 111 FALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS-------- 182 (314)
T ss_pred HHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--------
Confidence 9999999999999999999642 346899999999999999999999999999999999875321
Q ss_pred chhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297 197 SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
.. . ..+.+|++++++||+|++|+|+|++|+++||++.|+ +||+|++|||+|||++|||
T Consensus 183 -----------~~-~--~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~-~mk~ga~lIN~aRG~~Vde 240 (314)
T PRK06932 183 -----------VC-R--EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLA-LMKPTAFLINTGRGPLVDE 240 (314)
T ss_pred -----------cc-c--cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHH-hCCCCeEEEECCCccccCH
Confidence 00 0 124689999999999999999999999999999999 9999999999999999996
No 7
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=3.7e-49 Score=358.40 Aligned_cols=199 Identities=26% Similarity=0.368 Sum_probs=180.8
Q ss_pred ChhhhcCCceEEEEe-CCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHH
Q 024297 48 DVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG 126 (269)
Q Consensus 48 ~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~ 126 (269)
++.+.++++|++++. ..+++.++++.+|+||+|+..|+||||+|+++++++||.|+|+|++ +.++||||+++++|+
T Consensus 37 ~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~---~t~sVAe~~~aLiLa 113 (324)
T COG1052 37 ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGY---STEAVAEHAVALILA 113 (324)
T ss_pred HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCC---CchHHHHHHHHHHHH
Confidence 347778999988876 6899999999999999999999999999999999999999999999 669999999999999
Q ss_pred HhhcHHHHHHHHHhCCCCC------CccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhh
Q 024297 127 LLRKQNEMRMAIEQKKLGV------PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA 200 (269)
Q Consensus 127 ~~R~~~~~~~~~~~~~w~~------~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~ 200 (269)
+.|++.+.++..+++.|.. ..+.+++|||+||||+|+||+++|+++++|||+|++|+|++.+..
T Consensus 114 ~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~---------- 183 (324)
T COG1052 114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEA---------- 183 (324)
T ss_pred HhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHH----------
Confidence 9999999999999999875 356799999999999999999999999999999999999875210
Q ss_pred hcccccccccccc-CCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297 201 VKNGIIDDLVDEK-GCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 201 ~~~~~~~~~~~~~-~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
.... ..+.++++++++||+|++|||+|++|+|+||++.|+ +||+|++|||+|||++|||
T Consensus 184 ---------~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~-~mk~ga~lVNtaRG~~VDe 243 (324)
T COG1052 184 ---------EKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELA-KMKPGAILVNTARGGLVDE 243 (324)
T ss_pred ---------HhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHH-hCCCCeEEEECCCccccCH
Confidence 0111 134559999999999999999999999999999999 9999999999999999996
No 8
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=6.9e-48 Score=361.28 Aligned_cols=237 Identities=21% Similarity=0.222 Sum_probs=198.5
Q ss_pred CCCCCCCcceEEEeCCCCCCchhhHHHHHhcC-C-CeEEe--eCCCCChhhhcCCceEEEEe-CCCCCHHHHhcCCCceE
Q 024297 5 ARSSDKNITRVLFCGPHFPASHNYTKEYLQNY-P-SIQVD--VVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKL 79 (269)
Q Consensus 5 ~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~ 79 (269)
+-+.++.||+|+++.+..+. ..+.++.. . .+... ..+++++.+.++++|+++++ ..++++++++.+|+|||
T Consensus 3 ~~~~~~~~~~ili~~~~~~~----~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~ 78 (409)
T PRK11790 3 KVSLPKDKIKFLLLEGVHQS----AVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVA 78 (409)
T ss_pred CCCCCCCCeEEEEECCCCHH----HHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeE
Confidence 45778888999998764322 22333332 1 22221 12345667788999987654 45899999999999999
Q ss_pred EEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--ccccccCCEEE
Q 024297 80 IMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVF 157 (269)
Q Consensus 80 I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~g~~vg 157 (269)
|++.|+|+|++|+++++++||.|+|+||+ ++.+||||+++++|++.|++..+++.++++.|... .+.+|.|||||
T Consensus 79 I~~~~~G~d~id~~~~~~~gI~V~n~pg~---~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvG 155 (409)
T PRK11790 79 IGCFCIGTNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLG 155 (409)
T ss_pred EEECceecccccHHHHHhCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEE
Confidence 99999999999999999999999999998 88999999999999999999999999999999753 46899999999
Q ss_pred EEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCc
Q 024297 158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK 237 (269)
Q Consensus 158 IiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~ 237 (269)
|||+|+||+.+|+++++|||+|++||++..... .. .....++++++++||+|++|+|+|+
T Consensus 156 IiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~-----------------~~---~~~~~~l~ell~~sDiVslh~Plt~ 215 (409)
T PRK11790 156 IVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPL-----------------GN---ARQVGSLEELLAQSDVVSLHVPETP 215 (409)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEECCCccccc-----------------CC---ceecCCHHHHHhhCCEEEEcCCCCh
Confidence 999999999999999999999999998542210 00 0123589999999999999999999
Q ss_pred cccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297 238 QTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 238 ~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
+|+++||++.|+ +||+|++|||+|||++|||
T Consensus 216 ~T~~li~~~~l~-~mk~ga~lIN~aRG~~vde 246 (409)
T PRK11790 216 STKNMIGAEELA-LMKPGAILINASRGTVVDI 246 (409)
T ss_pred HHhhccCHHHHh-cCCCCeEEEECCCCcccCH
Confidence 999999999999 9999999999999999996
No 9
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=9.4e-47 Score=345.42 Aligned_cols=230 Identities=23% Similarity=0.319 Sum_probs=192.0
Q ss_pred ceEEEeCCCCCCchhhHHHHHhcCCCeEEee----CCCCChhhhcCCceEEEEeC-CCCCHHHHhcCCCceEEEEccccC
Q 024297 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGL 87 (269)
Q Consensus 13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~dv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG~ 87 (269)
+||+++.+..+ ...+ .++...++.+.. .+.+++.+.++++|++++.. .++++++++.+|+||||++.++|+
T Consensus 3 ~kil~~~~~~~---~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~ 78 (333)
T PRK13243 3 PKVFITREIPE---NGIE-MLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGY 78 (333)
T ss_pred ceEEEECCCCH---HHHH-HHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccc
Confidence 77888876422 2223 333322332221 23345667789999888753 589999999999999999999999
Q ss_pred CccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC---------ccccccCCEEEE
Q 024297 88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---------TGETLLGKTVFI 158 (269)
Q Consensus 88 d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---------~~~~l~g~~vgI 158 (269)
|++|+++++++||.|+|+||+ |+.+||||+++++|++.|++..+++.++++.|... .+.+|.||||||
T Consensus 79 d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgI 155 (333)
T PRK13243 79 DNIDVEEATRRGIYVTNTPGV---LTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGI 155 (333)
T ss_pred cccCHHHHHHcCCEEEECCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEE
Confidence 999999999999999999998 88999999999999999999999999999999631 357899999999
Q ss_pred EecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccccc-CCCCCHHHHHhhCCEEEEecCCCc
Q 024297 159 LGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADVVVCCLSLNK 237 (269)
Q Consensus 159 iG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDvvv~~lp~t~ 237 (269)
||+|+||+.+|++|++|||+|++|||+..+.. .... ....++++++++||+|++|+|+|+
T Consensus 156 iG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-------------------~~~~~~~~~~l~ell~~aDiV~l~lP~t~ 216 (333)
T PRK13243 156 IGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-------------------EKELGAEYRPLEELLRESDFVSLHVPLTK 216 (333)
T ss_pred ECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-------------------HHHcCCEecCHHHHHhhCCEEEEeCCCCh
Confidence 99999999999999999999999998754310 0011 134689999999999999999999
Q ss_pred cccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297 238 QTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 238 ~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
+|+++|+++.|+ .||+|++|||+|||++|||
T Consensus 217 ~T~~~i~~~~~~-~mk~ga~lIN~aRg~~vd~ 247 (333)
T PRK13243 217 ETYHMINEERLK-LMKPTAILVNTARGKVVDT 247 (333)
T ss_pred HHhhccCHHHHh-cCCCCeEEEECcCchhcCH
Confidence 999999999999 9999999999999999996
No 10
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=5.6e-45 Score=338.34 Aligned_cols=250 Identities=20% Similarity=0.198 Sum_probs=192.3
Q ss_pred CCCcceEEEeCCCCCCchhhHHHHHhcC-CCeEEee-----CCCCChhhhc-CCceEEEEe-CCCCCHHHHhcCCC--ce
Q 024297 9 DKNITRVLFCGPHFPASHNYTKEYLQNY-PSIQVDV-----VPISDVPDVI-ANYHLCVVK-TMRLDSNCISRANQ--MK 78 (269)
Q Consensus 9 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~-~~~dv~i~~-~~~~~~~~l~~~~~--Lk 78 (269)
+.-+++|+++.+..++. . .+.++.. ..++... .+.+++.+.+ .++|++++. ..++++++++.+++ ||
T Consensus 12 ~~~~~~v~~~~~~~~~~--~-~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk 88 (386)
T PLN02306 12 PNGKYRVVSTKPMPGTR--W-INLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGK 88 (386)
T ss_pred CCCCceEEEeCCCCcHH--H-HHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCce
Confidence 34577888888754321 1 2333322 1232211 3445666776 469988765 35799999999985 69
Q ss_pred EEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC-----CccccccC
Q 024297 79 LIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLG 153 (269)
Q Consensus 79 ~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~g 153 (269)
+|++.++|+|++|+++++++||.|+|+||+ ++.+||||+++++|++.|++..+++.++++.|.. ..|.++.|
T Consensus 89 ~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~---~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~g 165 (386)
T PLN02306 89 AFSNMAVGYNNVDVEAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKG 165 (386)
T ss_pred EEEECCcccccccHHHHHHCCCEEEECCCc---CHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCC
Confidence 999999999999999999999999999998 7899999999999999999999999999998742 24678999
Q ss_pred CEEEEEecCchHHHHHHHhc-cCCCEEEEEcCCCCCccccccccchhhhcccccccccccc--CCCCCHHHHHhhCCEEE
Q 024297 154 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GCHEDIFEFASKADVVV 230 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ell~~aDvvv 230 (269)
|||||||+|+||+++|+++. +|||+|++||++............+..... ...... ....+|++++++||+|+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~L~ell~~sDiV~ 241 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKA----NGEQPVTWKRASSMEEVLREADVIS 241 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccc----cccccccccccCCHHHHHhhCCEEE
Confidence 99999999999999999985 999999999987643110000000000000 000000 01358999999999999
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
+|+|+|++|+++||++.|+ +||+|++|||+|||++|||
T Consensus 242 lh~Plt~~T~~lin~~~l~-~MK~ga~lIN~aRG~lVDe 279 (386)
T PLN02306 242 LHPVLDKTTYHLINKERLA-LMKKEAVLVNASRGPVIDE 279 (386)
T ss_pred EeCCCChhhhhhcCHHHHH-hCCCCeEEEECCCccccCH
Confidence 9999999999999999999 9999999999999999996
No 11
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-45 Score=341.43 Aligned_cols=201 Identities=26% Similarity=0.351 Sum_probs=180.0
Q ss_pred CChhhhcCCceEEEEeC---CCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHH
Q 024297 47 SDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123 (269)
Q Consensus 47 ~~~~~~~~~~dv~i~~~---~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~ 123 (269)
+++.+.++++|++++.. .+++++.++++|+||||++.++|+|++|++++.++||.|+|++|+ |+.+||||++++
T Consensus 89 ~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~---na~sVAE~al~l 165 (386)
T PLN03139 89 CELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGS---NVVSVAEDELMR 165 (386)
T ss_pred HHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCc---CcHHHHHHHHHH
Confidence 35677899999988743 369999999999999999999999999999999999999999998 889999999999
Q ss_pred HHHHhhcHHHHHHHHHhCCCCC----CccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchh
Q 024297 124 MLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 199 (269)
Q Consensus 124 ~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~ 199 (269)
+|++.|++..+++.++++.|.. ..+.+|.||||||||+|+||+.+|++|++|||+|++||++..+..
T Consensus 166 iL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~--------- 236 (386)
T PLN03139 166 ILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPE--------- 236 (386)
T ss_pred HHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchh---------
Confidence 9999999999999999999974 246789999999999999999999999999999999998753311
Q ss_pred hhccccccccccccC--CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297 200 AVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 200 ~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
.....+ ..+++++++++||+|++|+|+|++|+++||++.|+ +||+|++|||+|||++|||
T Consensus 237 ---------~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~-~mk~ga~lIN~aRG~iVDe 298 (386)
T PLN03139 237 ---------LEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIA-KMKKGVLIVNNARGAIMDT 298 (386)
T ss_pred ---------hHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHh-hCCCCeEEEECCCCchhhH
Confidence 111111 23589999999999999999999999999999999 9999999999999999996
No 12
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=6.5e-45 Score=337.32 Aligned_cols=201 Identities=29% Similarity=0.409 Sum_probs=180.2
Q ss_pred CChhhhcCCceEEEEe---CCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHH
Q 024297 47 SDVPDVIANYHLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123 (269)
Q Consensus 47 ~~~~~~~~~~dv~i~~---~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~ 123 (269)
+++.+.++++|++++. ..+++++.++++|+||||++.++|+|++|++++.++||.|+|++++ |+.+||||++++
T Consensus 82 ~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~---~a~~VAE~al~l 158 (385)
T PRK07574 82 SDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGS---NSISVAEHVVMM 158 (385)
T ss_pred HHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCC---chHHHHHHHHHH
Confidence 5567889999998874 2479999999999999999999999999999999999999999998 889999999999
Q ss_pred HHHHhhcHHHHHHHHHhCCCCCC----ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchh
Q 024297 124 MLGLLRKQNEMRMAIEQKKLGVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 199 (269)
Q Consensus 124 ~L~~~R~~~~~~~~~~~~~w~~~----~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~ 199 (269)
+|++.|++..+++.++++.|... .+.+|.|+||||||+|+||+.+|++|++|||+|++|||+..+..
T Consensus 159 ~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~--------- 229 (385)
T PRK07574 159 ILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEE--------- 229 (385)
T ss_pred HHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchh---------
Confidence 99999999999999999999742 46789999999999999999999999999999999998763311
Q ss_pred hhccccccccccccC--CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297 200 AVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 200 ~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
.....+ ...++++++++||+|++|+|+|++|+++||++.|+ +||+|++|||+|||++|||
T Consensus 230 ---------~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~-~mk~ga~lIN~aRG~iVDe 291 (385)
T PRK07574 230 ---------VEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLS-RMKRGSYLVNTARGKIVDR 291 (385)
T ss_pred ---------hHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHh-cCCCCcEEEECCCCchhhH
Confidence 011111 24689999999999999999999999999999999 9999999999999999986
No 13
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-45 Score=323.83 Aligned_cols=231 Identities=26% Similarity=0.354 Sum_probs=200.7
Q ss_pred cceEEEeCCCCCCchhhHHHHH-hcCCCeEEe-eCCCCChhhhcCCceEEEE-eCCCCCHHHHh-cCCCceEEEEccccC
Q 024297 12 ITRVLFCGPHFPASHNYTKEYL-QNYPSIQVD-VVPISDVPDVIANYHLCVV-KTMRLDSNCIS-RANQMKLIMQFGVGL 87 (269)
Q Consensus 12 ~~~vl~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~dv~i~-~~~~~~~~~l~-~~~~Lk~I~~~~aG~ 87 (269)
|.+||++++..... .+.+ +.+..+++. ..+.+|+.+.++++|++++ ..+++++++++ ...+||+|.+.++|+
T Consensus 6 ~~~il~~e~~~~~~----~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~ 81 (406)
T KOG0068|consen 6 MRKILVAESLDQAC----IEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGV 81 (406)
T ss_pred cceEEEecccchHH----HHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCc
Confidence 33899998864332 2344 333345544 3456688999999998776 47999999999 467999999999999
Q ss_pred CccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC--CccccccCCEEEEEecCchH
Q 024297 88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIG 165 (269)
Q Consensus 88 d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~g~~vgIiG~G~iG 165 (269)
|++|+++++++||.|.|+|.+ |..++||+++++++++.|++.+....++.|+|.. ..|.++.|||+||+|+|+||
T Consensus 82 dNVDL~AAte~gi~Vvn~P~~---Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIG 158 (406)
T KOG0068|consen 82 DNVDLKAATENGILVVNTPTA---NSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIG 158 (406)
T ss_pred cccChhhHHhCCeEEEeCCCC---ChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccch
Confidence 999999999999999999998 8899999999999999999999999999999985 47899999999999999999
Q ss_pred HHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEecCCCccccCcCC
Q 024297 166 VELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTVKLCS 244 (269)
Q Consensus 166 ~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t~~t~~li~ 244 (269)
+++|++++++||+|++||+-... +.....+ ...+++|+++.||+|++|+|+||+|++++|
T Consensus 159 seVA~r~k~~gm~vI~~dpi~~~-------------------~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin 219 (406)
T KOG0068|consen 159 SEVAVRAKAMGMHVIGYDPITPM-------------------ALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLN 219 (406)
T ss_pred HHHHHHHHhcCceEEeecCCCch-------------------HHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccC
Confidence 99999999999999999976543 1223333 457999999999999999999999999999
Q ss_pred HHHHhhhCCCCcEEEEccCCCCccC
Q 024297 245 SSLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 245 ~~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
.+.|+ +||+|..+||++||.+|||
T Consensus 220 ~~tfA-~mKkGVriIN~aRGGvVDe 243 (406)
T KOG0068|consen 220 DETFA-KMKKGVRIINVARGGVVDE 243 (406)
T ss_pred HHHHH-HhhCCcEEEEecCCceech
Confidence 99999 9999999999999999997
No 14
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-44 Score=346.97 Aligned_cols=230 Identities=30% Similarity=0.439 Sum_probs=195.0
Q ss_pred ceEEEeCCCCCCchhhHHHHHhcCCCeEEee---CCCCChhhhcCCceEEEEe-CCCCCHHHHhcCCCceEEEEccccCC
Q 024297 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE 88 (269)
Q Consensus 13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d 88 (269)
|||+++.+..+. ..+.++..+++++.. .+.+++.+.++++|+++++ ..++++++++.+|+||||++.|+|+|
T Consensus 1 m~ili~~~~~~~----~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d 76 (526)
T PRK13581 1 MKVLVSDPISPA----GLEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVD 76 (526)
T ss_pred CeEEEeCCCCHH----HHHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccc
Confidence 478888764322 233444444555542 2346677888999998875 36899999999999999999999999
Q ss_pred ccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC--CccccccCCEEEEEecCchHH
Q 024297 89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGV 166 (269)
Q Consensus 89 ~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~g~~vgIiG~G~iG~ 166 (269)
++|+++++++||.|+|+|++ |+.+||||+++++|++.|++..+++.++++.|.. ..+.+|.||||||||+|+||+
T Consensus 77 ~id~~~~~~~gI~V~n~p~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~ 153 (526)
T PRK13581 77 NVDVPAATRRGIIVVNAPTG---NTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGS 153 (526)
T ss_pred cccHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHH
Confidence 99999999999999999998 7899999999999999999999999999999975 356889999999999999999
Q ss_pred HHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEecCCCccccCcCCH
Q 024297 167 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTVKLCSS 245 (269)
Q Consensus 167 ~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t~~t~~li~~ 245 (269)
.+|++|++|||+|++||++..+. . ....+ ...++++++++||+|++|+|+|++|++++++
T Consensus 154 ~vA~~l~~fG~~V~~~d~~~~~~-~------------------~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~ 214 (526)
T PRK13581 154 EVAKRAKAFGMKVIAYDPYISPE-R------------------AAQLGVELVSLDELLARADFITLHTPLTPETRGLIGA 214 (526)
T ss_pred HHHHHHHhCCCEEEEECCCCChh-H------------------HHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCH
Confidence 99999999999999999864321 0 00111 2348999999999999999999999999999
Q ss_pred HHHhhhCCCCcEEEEccCCCCccC
Q 024297 246 SLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 246 ~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
+.|+ +||+|++|||+|||++|||
T Consensus 215 ~~l~-~mk~ga~lIN~aRG~~vde 237 (526)
T PRK13581 215 EELA-KMKPGVRIINCARGGIIDE 237 (526)
T ss_pred HHHh-cCCCCeEEEECCCCceeCH
Confidence 9999 9999999999999999996
No 15
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-44 Score=327.86 Aligned_cols=232 Identities=19% Similarity=0.281 Sum_probs=200.2
Q ss_pred cceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCC---CCChhhhcCCceEEEEe-CCCCCHHHHhcCC--CceEEEEccc
Q 024297 12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVK-TMRLDSNCISRAN--QMKLIMQFGV 85 (269)
Q Consensus 12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~--~Lk~I~~~~a 85 (269)
||||+++... +.++++..++++++ ++++.... .++..+.++++|++++. ..++++++++++| +||+|++.++
T Consensus 1 ~~~i~~~~~~-~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~ 78 (330)
T PRK12480 1 MTKIMFFGTR-DYEKEMALNWGKKN-NVEVTTSKELLSSATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTA 78 (330)
T ss_pred CcEEEEEeCc-HHHHHHHHHHHHhc-CeEEEEcCCCCCHHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccc
Confidence 5899999885 55677888888777 56655422 23457788999988775 4589999999997 9999999999
Q ss_pred cCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCC--C-CccccccCCEEEEEecC
Q 024297 86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--V-PTGETLLGKTVFILGFG 162 (269)
Q Consensus 86 G~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~--~-~~~~~l~g~~vgIiG~G 162 (269)
|+|++|+++++++||.|+|+|++ ++.+||||+++++|++.|++..+++.++++.|. . ..+++|.|++|||||+|
T Consensus 79 G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G 155 (330)
T PRK12480 79 GFDMYDLDLAKKHNIVISNVPSY---SPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTG 155 (330)
T ss_pred ccchhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCC
Confidence 99999999999999999999998 789999999999999999999999999998653 2 34679999999999999
Q ss_pred chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCc
Q 024297 163 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKL 242 (269)
Q Consensus 163 ~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~l 242 (269)
.||+.+|++|++|||+|++||++..... .. . ....++++++++||+|++|+|++++|+++
T Consensus 156 ~IG~~vA~~L~~~G~~V~~~d~~~~~~~-----------------~~-~--~~~~~l~ell~~aDiVil~lP~t~~t~~l 215 (330)
T PRK12480 156 RIGAATAKIYAGFGATITAYDAYPNKDL-----------------DF-L--TYKDSVKEAIKDADIISLHVPANKESYHL 215 (330)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCChhHhh-----------------hh-h--hccCCHHHHHhcCCEEEEeCCCcHHHHHH
Confidence 9999999999999999999998764310 00 0 12357999999999999999999999999
Q ss_pred CCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297 243 CSSSLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 243 i~~~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
++++.|+ +||+|++|||+|||.+|||
T Consensus 216 i~~~~l~-~mk~gavlIN~aRG~~vd~ 241 (330)
T PRK12480 216 FDKAMFD-HVKKGAILVNAARGAVINT 241 (330)
T ss_pred HhHHHHh-cCCCCcEEEEcCCccccCH
Confidence 9999999 9999999999999999996
No 16
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=4.4e-44 Score=345.39 Aligned_cols=202 Identities=26% Similarity=0.407 Sum_probs=181.2
Q ss_pred CCCChhhhcCCceEEEEeC-CCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHH
Q 024297 45 PISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123 (269)
Q Consensus 45 ~~~~~~~~~~~~dv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~ 123 (269)
+.+++.+.++++|+++++. .++++++++.+|+||||++.|+|+|++|+++++++||.|+|+|++ |+.+||||++++
T Consensus 30 ~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~---~~~~vAE~~~~l 106 (525)
T TIGR01327 30 SREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTG---NTISAAEHALAM 106 (525)
T ss_pred CHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCc---ChHHHHHHHHHH
Confidence 4566778899999888753 589999999999999999999999999999999999999999998 889999999999
Q ss_pred HHHHhhcHHHHHHHHHhCCCCCC--ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhh
Q 024297 124 MLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV 201 (269)
Q Consensus 124 ~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~ 201 (269)
+|++.|++..+++.++++.|... .+.+|.||||||||+|+||+++|++|++|||+|++||++..+..
T Consensus 107 ~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~----------- 175 (525)
T TIGR01327 107 LLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPER----------- 175 (525)
T ss_pred HHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH-----------
Confidence 99999999999999999999753 56899999999999999999999999999999999998643210
Q ss_pred ccccccccccccC-C-CCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297 202 KNGIIDDLVDEKG-C-HEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 202 ~~~~~~~~~~~~~-~-~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
....+ . .+++++++++||+|++|+|+|++|+++||++.|+ +||+|++|||+|||++|||
T Consensus 176 --------~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~-~mk~ga~lIN~aRG~~vde 236 (525)
T TIGR01327 176 --------AEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELA-KMKKGVIIVNCARGGIIDE 236 (525)
T ss_pred --------HHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHh-cCCCCeEEEEcCCCceeCH
Confidence 01111 1 2579999999999999999999999999999999 9999999999999999996
No 17
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=2.2e-42 Score=313.56 Aligned_cols=227 Identities=17% Similarity=0.235 Sum_probs=185.6
Q ss_pred eEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCCCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccCCccchh
Q 024297 14 RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDIN 93 (269)
Q Consensus 14 ~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~ 93 (269)
.+++..+.... ..+.+.+.+.+|++++...+..+ .+++|+++++. .+.+.++ .++||||++.++|+|++|..
T Consensus 2 ~~~~~~~~~~~-~~~~~~l~~~~p~~~~~~~~~~~----~~~a~~~~~~~--~~~~~l~-~~~Lk~I~~~~aG~d~i~~~ 73 (312)
T PRK15469 2 DIIFYHPTFDT-QWWIEALRKALPQARVRAWKSGD----NDPADYALVWH--PPVEMLA-GRDLKAVFALGAGVDSILSK 73 (312)
T ss_pred EEEEeCCccCH-HHHHHHHHHHCCCCeEEecCCCC----CccCeEEEEeC--CChHHhc-cCCceEEEEcccccchhhhh
Confidence 56666665322 33555566668888776544333 46889888753 4667776 58999999999999999732
Q ss_pred h-----HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHH
Q 024297 94 A-----ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVEL 168 (269)
Q Consensus 94 ~-----~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~ 168 (269)
. +.++||.|+|+++. +++.+||||+++++|++.|++..+.+.++++.|......++.|+||||||+|+||+++
T Consensus 74 ~~~~~~~~~~~i~v~~~~~~--~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~v 151 (312)
T PRK15469 74 LQAHPEMLDPSVPLFRLEDT--GMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKV 151 (312)
T ss_pred hccccccCCCCceEEEecCC--cccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHH
Confidence 2 44689999999764 2679999999999999999999999999999998766678999999999999999999
Q ss_pred HHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHH
Q 024297 169 AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLS 248 (269)
Q Consensus 169 a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l 248 (269)
|++|++|||+|++|+++..+. ..........++++++++||+|++|+|+|++|+++|+++.|
T Consensus 152 A~~l~afG~~V~~~~~~~~~~------------------~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l 213 (312)
T PRK15469 152 AQSLQTWGFPLRCWSRSRKSW------------------PGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLL 213 (312)
T ss_pred HHHHHHCCCEEEEEeCCCCCC------------------CCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHH
Confidence 999999999999999865431 01111123568999999999999999999999999999999
Q ss_pred hhhCCCCcEEEEccCCCCccC
Q 024297 249 SKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 249 ~~~mk~ga~lIN~~RG~~vde 269 (269)
+ +||+|++|||+|||++|||
T Consensus 214 ~-~mk~ga~lIN~aRG~vVde 233 (312)
T PRK15469 214 E-QLPDGAYLLNLARGVHVVE 233 (312)
T ss_pred h-cCCCCcEEEECCCccccCH
Confidence 9 9999999999999999996
No 18
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=4.3e-42 Score=317.29 Aligned_cols=209 Identities=22% Similarity=0.320 Sum_probs=176.1
Q ss_pred ceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCCCChhhhcCCceEEEEe-CCCCCHHHHhcCCCceEEEEccccCCccc
Q 024297 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVD 91 (269)
Q Consensus 13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d~id 91 (269)
|||++.+.. + +..++++.+.++.... ..+...+.++++|+++++ .+++++++++ +++||||+++++|+||+|
T Consensus 1 mkIl~d~~~-~----~~~~~~~~~~ev~~~~-~~~~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD 73 (378)
T PRK15438 1 MKILVDENM-P----YARELFSRLGEVKAVP-GRPIPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVD 73 (378)
T ss_pred CEEEEeCCc-c----hHHHHHhhcCcEEEeC-CCCCCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccC
Confidence 578888764 3 3456666654443332 233345668999998875 4689999986 699999999999999999
Q ss_pred hhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHH
Q 024297 92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171 (269)
Q Consensus 92 ~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~ 171 (269)
++++.++||.|+|+||+ |+.+||||+++++|++.|+. +.++.||||||||+|+||+.+|++
T Consensus 74 ~~~~~~~gI~v~napg~---na~aVAE~~~~~lL~l~r~~----------------g~~L~gktvGIIG~G~IG~~vA~~ 134 (378)
T PRK15438 74 EAWLKQAGIGFSAAPGC---NAIAVVEYVFSSLLMLAERD----------------GFSLHDRTVGIVGVGNVGRRLQAR 134 (378)
T ss_pred HHHHHHCCCEEEECCCc---CchHHHHHHHHHHHHHhccC----------------CCCcCCCEEEEECcCHHHHHHHHH
Confidence 99999999999999998 88999999999999999962 468999999999999999999999
Q ss_pred hccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCcc----ccCcCCHHH
Q 024297 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ----TVKLCSSSL 247 (269)
Q Consensus 172 l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~----t~~li~~~~ 247 (269)
|++|||+|++||+..... . ......+|++++++||+|++|+|+|++ |++++|++.
T Consensus 135 l~a~G~~V~~~dp~~~~~------------------~---~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~ 193 (378)
T PRK15438 135 LEALGIKTLLCDPPRADR------------------G---DEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKL 193 (378)
T ss_pred HHHCCCEEEEECCccccc------------------c---cccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHH
Confidence 999999999999743220 0 001346899999999999999999996 999999999
Q ss_pred HhhhCCCCcEEEEccCCCCccC
Q 024297 248 SSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 248 l~~~mk~ga~lIN~~RG~~vde 269 (269)
|+ +||+|++|||+|||++|||
T Consensus 194 l~-~mk~gailIN~aRG~vVDe 214 (378)
T PRK15438 194 IR-SLKPGAILINACRGAVVDN 214 (378)
T ss_pred Hh-cCCCCcEEEECCCchhcCH
Confidence 99 9999999999999999996
No 19
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-41 Score=306.91 Aligned_cols=215 Identities=19% Similarity=0.217 Sum_probs=174.7
Q ss_pred eEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCCCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccCCccchh
Q 024297 14 RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDIN 93 (269)
Q Consensus 14 ~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~ 93 (269)
++++..+..+ .+.+.+.+.++.+++...+ ...++|++++... +..+++||||++.++|+|++|++
T Consensus 2 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~------~~~~~~Lk~I~~~~aG~D~id~~ 66 (303)
T PRK06436 2 NVYVNFPMSK---KLLEICRDILDLDDVHWYP------DYYDAEAILIKGR------YVPGKKTKMIQSLSAGVDHIDVS 66 (303)
T ss_pred eEEEEccCCH---HHHHHHHhhcccceeEecc------ccCCCCEEEecCC------cCCCCCeEEEEECCcccCcccHH
Confidence 4555544322 2222223345555554422 2468888765332 23367999999999999999999
Q ss_pred hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhc
Q 024297 94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLR 173 (269)
Q Consensus 94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~ 173 (269)
+++++++.++|. |. ++.+||||+++++|++.|++..+++.++++.|....+.+|.||||||||+|+||+++|++++
T Consensus 67 ~~~~~~i~~~~~-g~---~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~ 142 (303)
T PRK06436 67 GIPENVVLCSNA-GA---YSISVAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAK 142 (303)
T ss_pred HHHhCCeEEEcC-CC---CcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHH
Confidence 999988887775 55 67999999999999999999999999999999877778999999999999999999999999
Q ss_pred cCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCC
Q 024297 174 PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMF 253 (269)
Q Consensus 174 ~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk 253 (269)
+|||+|++|+|+..+. .... ...++++++++||+|++|+|+|++|+++|+++.|+ +||
T Consensus 143 afG~~V~~~~r~~~~~-------------------~~~~--~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~-~mk 200 (303)
T PRK06436 143 AFGMNIYAYTRSYVND-------------------GISS--IYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLS-LFR 200 (303)
T ss_pred HCCCEEEEECCCCccc-------------------Cccc--ccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHh-cCC
Confidence 9999999999875331 1110 13589999999999999999999999999999999 999
Q ss_pred CCcEEEEccCCCCccC
Q 024297 254 FATYVVFMFQGHGVSF 269 (269)
Q Consensus 254 ~ga~lIN~~RG~~vde 269 (269)
+|++|||+|||++|||
T Consensus 201 ~ga~lIN~sRG~~vd~ 216 (303)
T PRK06436 201 KGLAIINVARADVVDK 216 (303)
T ss_pred CCeEEEECCCccccCH
Confidence 9999999999999996
No 20
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=2.1e-41 Score=310.09 Aligned_cols=221 Identities=19% Similarity=0.285 Sum_probs=187.0
Q ss_pred chhhHHHHHhcCCCeEEee---CCCCChhhhcCCceEEEEe-CCCCCHHHHhcCCC--ceEEEEccccCCccchhhHhcC
Q 024297 25 SHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVGLEGVDINAATRC 98 (269)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~--Lk~I~~~~aG~d~id~~~~~~~ 98 (269)
...+.+.+.+.+ ++++.. ...++..+.++++|+++++ ..++++++++.+|+ ||||++.|+|+|++|+++++++
T Consensus 13 ~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~ 91 (332)
T PRK08605 13 DAPYIKAWAEKH-HVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKY 91 (332)
T ss_pred HHHHHHHHHHhc-CeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHC
Confidence 345666666654 444332 2334556778899987764 46899999999996 9999999999999999999999
Q ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC---CccccccCCEEEEEecCchHHHHHHHh-cc
Q 024297 99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAKRL-RP 174 (269)
Q Consensus 99 gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~g~~vgIiG~G~iG~~~a~~l-~~ 174 (269)
||.|+|+|++ ++.+||||+++++|++.|++..+++.++++.|.+ ..+++|.|++|||||+|.||+++|++| ++
T Consensus 92 gi~v~n~~~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~ 168 (332)
T PRK08605 92 NLIISNVPSY---SPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG 168 (332)
T ss_pred CCEEEeCCCC---ChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHHHHHHHHhc
Confidence 9999999998 7899999999999999999999999999997742 246899999999999999999999999 79
Q ss_pred CCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCC
Q 024297 175 FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFF 254 (269)
Q Consensus 175 ~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ 254 (269)
|||+|++||++..... .... ....++++++++||+|++|+|++++|+++++++.++ .||+
T Consensus 169 ~g~~V~~~d~~~~~~~----------------~~~~---~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~-~mk~ 228 (332)
T PRK08605 169 YGSDVVAYDPFPNAKA----------------ATYV---DYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFK-HFKK 228 (332)
T ss_pred CCCEEEEECCCccHhH----------------Hhhc---cccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHh-cCCC
Confidence 9999999998754310 0011 123589999999999999999999999999999999 9999
Q ss_pred CcEEEEccCCCCccC
Q 024297 255 ATYVVFMFQGHGVSF 269 (269)
Q Consensus 255 ga~lIN~~RG~~vde 269 (269)
|++|||++||.++|+
T Consensus 229 gailIN~sRG~~vd~ 243 (332)
T PRK08605 229 GAVFVNCARGSLVDT 243 (332)
T ss_pred CcEEEECCCCcccCH
Confidence 999999999999985
No 21
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=2.6e-41 Score=312.88 Aligned_cols=209 Identities=17% Similarity=0.271 Sum_probs=176.7
Q ss_pred ceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCCCChhhhcCCceEEEEeC-CCCCHHHHhcCCCceEEEEccccCCccc
Q 024297 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVD 91 (269)
Q Consensus 13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG~d~id 91 (269)
|||++.+.. | +.+++++.+..+.... ..+...+.++++|+++++. +++++++++ .++||||++.++|+||+|
T Consensus 1 mkI~~d~~~-p----~~~~~~~~~~~v~~~~-~~~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD 73 (381)
T PRK00257 1 MKIVADENI-P----LLDAFFAGFGEIRRLP-GRAFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHLD 73 (381)
T ss_pred CEEEEecCc-h----hHHHHHhhCCcEEEcC-CcccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCccccccC
Confidence 688888886 2 4466666665443322 2333356789999987654 689999997 589999999999999999
Q ss_pred hhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHH
Q 024297 92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171 (269)
Q Consensus 92 ~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~ 171 (269)
++++.++||.|+|+||+ |+.+||||+++++|++.|+ .+.++.||||||||+|+||+.+|++
T Consensus 74 ~~~~~~~gI~v~napg~---na~aVAE~v~~~lL~l~r~----------------~g~~l~gktvGIIG~G~IG~~va~~ 134 (381)
T PRK00257 74 LDYFAEAGITWSSAPGC---NARGVVDYVLGSLLTLAER----------------EGVDLAERTYGVVGAGHVGGRLVRV 134 (381)
T ss_pred HHHHHHCCCEEEECCCc---ChHHHHHHHHHHHHHHhcc----------------cCCCcCcCEEEEECCCHHHHHHHHH
Confidence 99999999999999998 8899999999999999986 2578999999999999999999999
Q ss_pred hccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCc----cccCcCCHHH
Q 024297 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK----QTVKLCSSSL 247 (269)
Q Consensus 172 l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~----~t~~li~~~~ 247 (269)
+++|||+|++||+..... .. .....++++++++||+|++|+|+|+ +|+++||++.
T Consensus 135 l~a~G~~V~~~Dp~~~~~------------------~~---~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~ 193 (381)
T PRK00257 135 LRGLGWKVLVCDPPRQEA------------------EG---DGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAF 193 (381)
T ss_pred HHHCCCEEEEECCccccc------------------cc---CccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHH
Confidence 999999999999754221 00 0134689999999999999999999 5999999999
Q ss_pred HhhhCCCCcEEEEccCCCCccC
Q 024297 248 SSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 248 l~~~mk~ga~lIN~~RG~~vde 269 (269)
|+ +||+|++|||+|||++|||
T Consensus 194 l~-~mk~gailIN~aRG~vVde 214 (381)
T PRK00257 194 LA-SLRPGAWLINASRGAVVDN 214 (381)
T ss_pred Hh-cCCCCeEEEECCCCcccCH
Confidence 99 9999999999999999996
No 22
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=1.7e-41 Score=305.79 Aligned_cols=199 Identities=32% Similarity=0.416 Sum_probs=173.2
Q ss_pred hhhhcCCceEEEEe--CCCCCHHHHhcC-CCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHH
Q 024297 49 VPDVIANYHLCVVK--TMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125 (269)
Q Consensus 49 ~~~~~~~~dv~i~~--~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L 125 (269)
..+.+.+..+.+.. ....+.+.+... |+||+|.++|+|+||+|+++|+++||+|+|+|+. +..+|||++++++|
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~---~~~~vAd~~~~lil 130 (336)
T KOG0069|consen 54 FLKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDV---LTDDVADLAVSLLL 130 (336)
T ss_pred hhhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCc---chHHHHHHHHHHHH
Confidence 44455555554432 356677777764 8999999999999999999999999999999998 66999999999999
Q ss_pred HHhhcHHHHHHHHHhCCCCC----CccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhh
Q 024297 126 GLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV 201 (269)
Q Consensus 126 ~~~R~~~~~~~~~~~~~w~~----~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~ 201 (269)
.++|++...++.++++.|.. +.+..+.||||||+|+|+||+++|++|++||+.+.|++|+..+.
T Consensus 131 ~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~------------ 198 (336)
T KOG0069|consen 131 ALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPP------------ 198 (336)
T ss_pred HHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCch------------
Confidence 99999999999999999942 45789999999999999999999999999999999999977652
Q ss_pred ccccccccccccC-CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297 202 KNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 202 ~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
+...+.+ ...++++++.++|+||+|||+|++|+|++|++.|+ +||+|++|||+|||.++||
T Consensus 199 ------~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~-~mk~g~vlVN~aRG~iide 260 (336)
T KOG0069|consen 199 ------EEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIE-KMKDGAVLVNTARGAIIDE 260 (336)
T ss_pred ------hhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHH-hcCCCeEEEeccccccccH
Confidence 1222222 45799999999999999999999999999999999 9999999999999999996
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=3.2e-33 Score=234.84 Aligned_cols=130 Identities=33% Similarity=0.402 Sum_probs=112.3
Q ss_pred HHHHHHHhhcHHHHHHHHHhCCC---CCCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccc
Q 024297 121 IYLMLGLLRKQNEMRMAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS 197 (269)
Q Consensus 121 l~~~L~~~R~~~~~~~~~~~~~w---~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~ 197 (269)
++++|++.|++..+++.++++.| ....++++.|+||||||+|+||+++|++|++|||+|++|+|+..+..
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~------- 73 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE------- 73 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH-------
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh-------
Confidence 57999999999999999999999 56678999999999999999999999999999999999999875421
Q ss_pred hhhhccccccccccccC-CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297 198 ALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 198 ~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
.....+ ...++++++++||+|++|+|+|++|+++||++.|+ +||+|++|||+|||++|||
T Consensus 74 -----------~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~-~mk~ga~lvN~aRG~~vde 134 (178)
T PF02826_consen 74 -----------GADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLA-KMKPGAVLVNVARGELVDE 134 (178)
T ss_dssp -----------HHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHH-TSTTTEEEEESSSGGGB-H
T ss_pred -----------hcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeee-ccccceEEEeccchhhhhh
Confidence 011111 45799999999999999999999999999999999 9999999999999999996
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.87 E-value=1.2e-22 Score=182.67 Aligned_cols=184 Identities=23% Similarity=0.328 Sum_probs=163.7
Q ss_pred CCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCC
Q 024297 63 TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK 142 (269)
Q Consensus 63 ~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~ 142 (269)
+-.++++.+++++.||++...+.|+|++|+.++.+-||.|||.|+. .-+.+|+-++.++|.++|+.....+..+.+.
T Consensus 82 ~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~---~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~ 158 (435)
T KOG0067|consen 82 TITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSD---AVEETADSTLCHILNLYRRNTWLCQALREGT 158 (435)
T ss_pred ecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccch---hHHHHHHHHHHHHHhhhcccchhhhhhcccc
Confidence 4688999999999999999999999999999999999999999997 4588999999999999999999999999998
Q ss_pred CCCC---------ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccccc
Q 024297 143 LGVP---------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK 213 (269)
Q Consensus 143 w~~~---------~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (269)
|... ....+.|.+.|++|+|.+|++++.++++||..|+.||+....- .-..+
T Consensus 159 ~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g-------------------~~~~l 219 (435)
T KOG0067|consen 159 CTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDG-------------------IDKSL 219 (435)
T ss_pred eeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhh-------------------hhhhc
Confidence 8532 2356899999999999999999999999999999999765431 11111
Q ss_pred C--CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297 214 G--CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 214 ~--~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
+ ...++.+++.++|.+++||.+++.++++++.-.++ .|+.|++++|++||.++||
T Consensus 220 g~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tik-qm~qGaflvnta~gglvde 276 (435)
T KOG0067|consen 220 GLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIK-QMRQGAFLVNTARGGLVDE 276 (435)
T ss_pred ccceecccchhhhhccceeeecccCcccccccccccce-eecccceEeeecccccCCh
Confidence 2 34569999999999999999999999999998888 9999999999999999996
No 25
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.84 E-value=3.2e-20 Score=166.85 Aligned_cols=168 Identities=17% Similarity=0.250 Sum_probs=131.8
Q ss_pred hcCCceEEEEeC-----------------CCCCHHHHhcCCCceEEEEccccCCccchh-hHhcCCcEEE------ecCC
Q 024297 52 VIANYHLCVVKT-----------------MRLDSNCISRANQMKLIMQFGVGLEGVDIN-AATRCGIKVA------RIPG 107 (269)
Q Consensus 52 ~~~~~dv~i~~~-----------------~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~-~~~~~gI~v~------n~~~ 107 (269)
.+.++|+++... ..+++++++.+| .++...+|+++.+++ +++++||+|+ |++.
T Consensus 51 ~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~ 127 (287)
T TIGR02853 51 DLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAI 127 (287)
T ss_pred hhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEE
Confidence 378889877631 125688888777 477788899999988 8999999999 8877
Q ss_pred CCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 108 DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 108 ~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
+ |+.++||.++.+++.. .+.++.|++++|+|+|.||+.+|+.|+++|++|++++|+..
T Consensus 128 ~---n~~~~Ae~ai~~al~~-------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 128 Y---NSIPTAEGAIMMAIEH-------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred E---ccHhHHHHHHHHHHHh-------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 7 7899999999877743 13479999999999999999999999999999999999764
Q ss_pred CccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 188 SHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
+..... ..........++.++++++|+|++|+|.+ +++++.++ .||+++++||++-.
T Consensus 186 ~~~~~~--------------~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~-~~k~~aliIDlas~ 242 (287)
T TIGR02853 186 DLARIT--------------EMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLS-KLPKHAVIIDLASK 242 (287)
T ss_pred HHHHHH--------------HCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHh-cCCCCeEEEEeCcC
Confidence 311000 00001112356888999999999999863 77888999 99999999999864
No 26
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.78 E-value=1.9e-18 Score=163.07 Aligned_cols=146 Identities=16% Similarity=0.102 Sum_probs=113.2
Q ss_pred ccccCCccc-hhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec
Q 024297 83 FGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF 161 (269)
Q Consensus 83 ~~aG~d~id-~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~ 161 (269)
.++|+..+- ......-+|+|+|+|++ +..++||+++++++++...+. +.+ +..+.|++|+|+|+
T Consensus 198 TttGv~rl~~m~~~g~L~iPV~nv~d~---~tk~~aD~~~G~~~s~~d~~~------R~~------~~~LaGKtVgVIG~ 262 (476)
T PTZ00075 198 TTTGVHRLYKMLKKGELLFPAINVNDS---VTKSKFDNIYGCRHSLIDGIF------RAT------DVMIAGKTVVVCGY 262 (476)
T ss_pred chHHHHHHHHHHHCCCCCceEEEeCCc---chHHHHHHHHHHHHHHHHHHH------Hhc------CCCcCCCEEEEECC
Confidence 355655532 11122357999999998 669999999999999884432 222 36899999999999
Q ss_pred CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccC
Q 024297 162 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVK 241 (269)
Q Consensus 162 G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~ 241 (269)
|.||+.+|++|++|||+|+++++.+.+.... ...-....+++++++++|+|++|. .|++
T Consensus 263 G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A-----------------~~~G~~~~~leell~~ADIVI~at----Gt~~ 321 (476)
T PTZ00075 263 GDVGKGCAQALRGFGARVVVTEIDPICALQA-----------------AMEGYQVVTLEDVVETADIFVTAT----GNKD 321 (476)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCchhHHHH-----------------HhcCceeccHHHHHhcCCEEEECC----Cccc
Confidence 9999999999999999999998765442110 001012357899999999999984 4789
Q ss_pred cCCHHHHhhhCCCCcEEEEccCCC
Q 024297 242 LCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 242 li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
+|+++.|+ .||+|++|||+|||.
T Consensus 322 iI~~e~~~-~MKpGAiLINvGr~d 344 (476)
T PTZ00075 322 IITLEHMR-RMKNNAIVGNIGHFD 344 (476)
T ss_pred ccCHHHHh-ccCCCcEEEEcCCCc
Confidence 99999999 999999999999995
No 27
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.67 E-value=1.7e-15 Score=136.97 Aligned_cols=173 Identities=17% Similarity=0.228 Sum_probs=127.5
Q ss_pred hhhcCCceEEEEeCC-----------------CCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCC--
Q 024297 50 PDVIANYHLCVVKTM-----------------RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT-- 110 (269)
Q Consensus 50 ~~~~~~~dv~i~~~~-----------------~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~-- 110 (269)
.+.+.++|+++.... .++.+.++.+|++..+. .|.+.++++ +.+.++||.+.+......
T Consensus 50 ~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~ 127 (296)
T PRK08306 50 EEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVA 127 (296)
T ss_pred HHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhh
Confidence 345789998875311 13678899999987554 588888887 788999999998774210
Q ss_pred -CCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCc
Q 024297 111 -GNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 189 (269)
Q Consensus 111 -~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~ 189 (269)
-|+.++||.++...+.. .+.++.+++++|+|+|.+|+.+++.|+.+|++|++++|+....
T Consensus 128 ~~ns~~~aegav~~a~~~-------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~ 188 (296)
T PRK08306 128 ILNSIPTAEGAIMMAIEH-------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHL 188 (296)
T ss_pred hhccHhHHHHHHHHHHHh-------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 15678888876653321 1356889999999999999999999999999999999975431
Q ss_pred cccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 190 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
.... ..........++.+.++++|+|++++|. .+++++.++ .|++++++||++-
T Consensus 189 ~~~~--------------~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~-~~~~g~vIIDla~ 242 (296)
T PRK08306 189 ARIT--------------EMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLS-KMPPEALIIDLAS 242 (296)
T ss_pred HHHH--------------HcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHH-cCCCCcEEEEEcc
Confidence 1100 0000011234678889999999999873 578899999 9999999999983
No 28
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.64 E-value=1.9e-16 Score=126.59 Aligned_cols=98 Identities=24% Similarity=0.406 Sum_probs=76.4
Q ss_pred EEEeCCCCCCchhhHHHHHhc-CCCeEEee-CCCCChhhhcCCceEEEEeCCC-CCHHHHhcCCCceEEEEccccCCccc
Q 024297 15 VLFCGPHFPASHNYTKEYLQN-YPSIQVDV-VPISDVPDVIANYHLCVVKTMR-LDSNCISRANQMKLIMQFGVGLEGVD 91 (269)
Q Consensus 15 vl~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~dv~i~~~~~-~~~~~l~~~~~Lk~I~~~~aG~d~id 91 (269)
||++.+..++ ..+.+++ + ++++.. .+.+++.+.++++|+++++... ++++.++.+|+||||+..|+|+|++|
T Consensus 1 ili~~~~~~~----~~~~l~~~~-~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 75 (133)
T PF00389_consen 1 ILITDPLPDE----EIERLEEGF-EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNID 75 (133)
T ss_dssp EEESSS-SHH----HHHHHHHTS-EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-
T ss_pred eEEeccCCHH----HHHHHHCCc-eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCccc
Confidence 5777765333 3344444 4 555443 3456678889999999987655 99999999999999999999999999
Q ss_pred hhhHhcCCcEEEecCCCCCCCcchHHHHH
Q 024297 92 INAATRCGIKVARIPGDVTGNAASCAELT 120 (269)
Q Consensus 92 ~~~~~~~gI~v~n~~~~~~~~~~~vAE~~ 120 (269)
+++++++||.|+|+||+ ++.+||||+
T Consensus 76 ~~~a~~~gI~V~n~~g~---~~~aVAE~a 101 (133)
T PF00389_consen 76 LEAAKERGIPVTNVPGY---NAEAVAEHA 101 (133)
T ss_dssp HHHHHHTTSEEEE-TTT---THHHHHHHH
T ss_pred HHHHhhCeEEEEEeCCc---CCcchhccc
Confidence 99999999999999998 789999999
No 29
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.54 E-value=7.7e-15 Score=132.43 Aligned_cols=93 Identities=26% Similarity=0.353 Sum_probs=76.3
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCC
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD 227 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD 227 (269)
..|+||||||||+|+||+++|++|+++|++|+++++...... .....+ ...++++++++||
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~------------------~A~~~G~~v~sl~Eaak~AD 73 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFE------------------VAKADGFEVMSVSEAVRTAQ 73 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhH------------------HHHHcCCEECCHHHHHhcCC
Confidence 579999999999999999999999999999999986532210 111111 2358999999999
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM 261 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~ 261 (269)
+|++|+|+ ++|+++++++.+. .||+|++|+..
T Consensus 74 VV~llLPd-~~t~~V~~~eil~-~MK~GaiL~f~ 105 (335)
T PRK13403 74 VVQMLLPD-EQQAHVYKAEVEE-NLREGQMLLFS 105 (335)
T ss_pred EEEEeCCC-hHHHHHHHHHHHh-cCCCCCEEEEC
Confidence 99999996 6789999999999 99999988753
No 30
>PLN02494 adenosylhomocysteinase
Probab=99.49 E-value=8.6e-14 Score=131.42 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=79.6
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
..+.|++|+|+|+|.||+.+|+++++||++|+++++++.+..... ...+ ...+++++++.+|+
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-------------~~G~----~vv~leEal~~ADV 312 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-------------MEGY----QVLTLEDVVSEADI 312 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-------------hcCC----eeccHHHHHhhCCE
Confidence 447999999999999999999999999999999998764421110 0011 22468899999999
Q ss_pred EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC-CCCccC
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ-GHGVSF 269 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R-G~~vde 269 (269)
|+.+ ..|+++++++.|+ .||+|++|+|+|| +..||+
T Consensus 313 VI~t----TGt~~vI~~e~L~-~MK~GAiLiNvGr~~~eID~ 349 (477)
T PLN02494 313 FVTT----TGNKDIIMVDHMR-KMKNNAIVCNIGHFDNEIDM 349 (477)
T ss_pred EEEC----CCCccchHHHHHh-cCCCCCEEEEcCCCCCccCH
Confidence 9973 3578999999999 9999999999999 577774
No 31
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.36 E-value=1.5e-12 Score=121.92 Aligned_cols=98 Identities=19% Similarity=0.160 Sum_probs=78.9
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
..+.|++|+|+|+|.||+.+|++++++|++|+++++.+.+..... ...+ ...+++++++.+|+
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-------------~~G~----~v~~leeal~~aDV 253 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-------------MDGF----RVMTMEEAAKIGDI 253 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-------------hcCC----EeCCHHHHHhcCCE
Confidence 458999999999999999999999999999999987664421100 0011 23467889999999
Q ss_pred EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC-cc
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG-VS 268 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~-vd 268 (269)
|+.+. .+.++++.+.|. .||+|++|+|+||+.+ ||
T Consensus 254 VItaT----G~~~vI~~~~~~-~mK~GailiN~G~~~~eId 289 (406)
T TIGR00936 254 FITAT----GNKDVIRGEHFE-NMKDGAIVANIGHFDVEID 289 (406)
T ss_pred EEECC----CCHHHHHHHHHh-cCCCCcEEEEECCCCceeC
Confidence 98864 367899999999 9999999999999987 66
No 32
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.36 E-value=3.3e-12 Score=120.19 Aligned_cols=147 Identities=18% Similarity=0.143 Sum_probs=99.0
Q ss_pred ccccCCccc-hhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec
Q 024297 83 FGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF 161 (269)
Q Consensus 83 ~~aG~d~id-~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~ 161 (269)
.++|+..+- .....+.+++|.|++++.+ .+.-|...+.--+....+.+ .....+.|++|+|+|+
T Consensus 156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~---K~~~dn~~gt~~s~~~ai~r------------at~~~l~Gk~VlViG~ 220 (425)
T PRK05476 156 TTTGVHRLYAMAKDGALKFPAINVNDSVT---KSKFDNRYGTGESLLDGIKR------------ATNVLIAGKVVVVAGY 220 (425)
T ss_pred chHHHHHHHHHHHcCCCCCCEEecCCccc---CccccccHHHHhhhHHHHHH------------hccCCCCCCEEEEECC
Confidence 455665542 1112346799999998743 44322222111111111100 0124589999999999
Q ss_pred CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccC
Q 024297 162 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVK 241 (269)
Q Consensus 162 G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~ 241 (269)
|.||+.+|++|+++|++|+++++++.+..... .......+++++++.+|+|+.+. .+.+
T Consensus 221 G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-----------------~~G~~v~~l~eal~~aDVVI~aT----G~~~ 279 (425)
T PRK05476 221 GDVGKGCAQRLRGLGARVIVTEVDPICALQAA-----------------MDGFRVMTMEEAAELGDIFVTAT----GNKD 279 (425)
T ss_pred CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-----------------hcCCEecCHHHHHhCCCEEEECC----CCHH
Confidence 99999999999999999999998765421110 00012346889999999998875 3567
Q ss_pred cCCHHHHhhhCCCCcEEEEccCCCC
Q 024297 242 LCSSSLSSKSMFFATYVVFMFQGHG 266 (269)
Q Consensus 242 li~~~~l~~~mk~ga~lIN~~RG~~ 266 (269)
+++.+.|. .||+|++++|+||...
T Consensus 280 vI~~~~~~-~mK~GailiNvG~~d~ 303 (425)
T PRK05476 280 VITAEHME-AMKDGAILANIGHFDN 303 (425)
T ss_pred HHHHHHHh-cCCCCCEEEEcCCCCC
Confidence 99999999 9999999999999764
No 33
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.23 E-value=1.3e-11 Score=101.20 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=66.5
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (269)
...+.||++.|+|||.+|+.+|+.|+++|++|++++..+.+..++. .+.+ ....++++++++|
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-------------~dGf----~v~~~~~a~~~ad 80 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-------------MDGF----EVMTLEEALRDAD 80 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-------------HTT-----EEE-HHHHTTT-S
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-------------hcCc----EecCHHHHHhhCC
Confidence 3669999999999999999999999999999999998654422111 0111 3357999999999
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
+++.+.- .+.+++.+.|+ +||+|+++.|++.-
T Consensus 81 i~vtaTG----~~~vi~~e~~~-~mkdgail~n~Gh~ 112 (162)
T PF00670_consen 81 IFVTATG----NKDVITGEHFR-QMKDGAILANAGHF 112 (162)
T ss_dssp EEEE-SS----SSSSB-HHHHH-HS-TTEEEEESSSS
T ss_pred EEEECCC----CccccCHHHHH-HhcCCeEEeccCcC
Confidence 9998853 46889999999 99999999999864
No 34
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.18 E-value=9.1e-12 Score=103.01 Aligned_cols=91 Identities=20% Similarity=0.291 Sum_probs=67.6
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccc-cCCCCCHHHHHhhCCEEEEe
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFASKADVVVCC 232 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDvvv~~ 232 (269)
++|||||+|+||+.+|++|...|++|++|||++.+... .... ....++..++++++|+|+++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~-----------------~~~~g~~~~~s~~e~~~~~dvvi~~ 64 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEA-----------------LAEAGAEVADSPAEAAEQADVVILC 64 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHH-----------------HHHTTEEEESSHHHHHHHBSEEEE-
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhh-----------------hHHhhhhhhhhhhhHhhcccceEee
Confidence 58999999999999999999999999999988654211 1111 11347899999999999999
Q ss_pred cCCCccccCcCC-HHHHhhhCCCCcEEEEcc
Q 024297 233 LSLNKQTVKLCS-SSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 233 lp~t~~t~~li~-~~~l~~~mk~ga~lIN~~ 262 (269)
+|..++++.++. .+.+. .+++|.++||++
T Consensus 65 v~~~~~v~~v~~~~~i~~-~l~~g~iiid~s 94 (163)
T PF03446_consen 65 VPDDDAVEAVLFGENILA-GLRPGKIIIDMS 94 (163)
T ss_dssp SSSHHHHHHHHHCTTHGG-GS-TTEEEEE-S
T ss_pred cccchhhhhhhhhhHHhh-ccccceEEEecC
Confidence 998777777553 33566 899999999986
No 35
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.18 E-value=2.3e-11 Score=111.06 Aligned_cols=92 Identities=23% Similarity=0.280 Sum_probs=72.5
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCC
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD 227 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD 227 (269)
..+.+++|||||+|+||+++|+.|+.+|++|+++++...+... .....+ ...+..+++++||
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~-----------------~A~~~G~~~~s~~eaa~~AD 75 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWK-----------------KAEADGFEVLTVAEAAKWAD 75 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHH-----------------HHHHCCCeeCCHHHHHhcCC
Confidence 5689999999999999999999999999999988775443211 111111 2348899999999
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCCcEEE
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVV 259 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lI 259 (269)
+|++++|.+.. ..+++++.+. .|++|++|+
T Consensus 76 VVvLaVPd~~~-~~V~~~~I~~-~Lk~g~iL~ 105 (330)
T PRK05479 76 VIMILLPDEVQ-AEVYEEEIEP-NLKEGAALA 105 (330)
T ss_pred EEEEcCCHHHH-HHHHHHHHHh-cCCCCCEEE
Confidence 99999997654 7777677888 899999885
No 36
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.11 E-value=1.4e-10 Score=108.94 Aligned_cols=96 Identities=19% Similarity=0.192 Sum_probs=76.5
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~a 226 (269)
+..+.|++|+|+|+|.||+.+++.++++|++|+++++++.+... ....+ ....+++.+..+
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~------------------A~~~G~~~~~~~e~v~~a 258 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQ------------------AAMEGYEVMTMEEAVKEG 258 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHH------------------HHhcCCEEccHHHHHcCC
Confidence 35579999999999999999999999999999999987654211 11112 223567888999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG 266 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~ 266 (269)
|+|+.+.. +.+.++.+.+. .||+|++++|+|++++
T Consensus 259 DVVI~atG----~~~~i~~~~l~-~mk~GgilvnvG~~~~ 293 (413)
T cd00401 259 DIFVTTTG----NKDIITGEHFE-QMKDGAIVCNIGHFDV 293 (413)
T ss_pred CEEEECCC----CHHHHHHHHHh-cCCCCcEEEEeCCCCC
Confidence 99998753 45788888899 9999999999999864
No 37
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.09 E-value=1.2e-10 Score=104.22 Aligned_cols=92 Identities=21% Similarity=0.246 Sum_probs=76.1
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC 231 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~ 231 (269)
.+|++||+|.||..+|++|...|++|.+|||++.+.. +.....+ ...+..++.+++|+|++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~-----------------~~~~~~Ga~~a~s~~eaa~~aDvVit 63 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAA-----------------ELLAAAGATVAASPAEAAAEADVVIT 63 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhh-----------------HHHHHcCCcccCCHHHHHHhCCEEEE
Confidence 4899999999999999999999999999999987621 1122222 34677899999999999
Q ss_pred ecCCCccccCcCC--HHHHhhhCCCCcEEEEccC
Q 024297 232 CLSLNKQTVKLCS--SSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 232 ~lp~t~~t~~li~--~~~l~~~mk~ga~lIN~~R 263 (269)
++|..++.+..+. ...++ .+|+|+++|+++-
T Consensus 64 mv~~~~~V~~V~~g~~g~~~-~~~~G~i~IDmST 96 (286)
T COG2084 64 MLPDDAAVRAVLFGENGLLE-GLKPGAIVIDMST 96 (286)
T ss_pred ecCCHHHHHHHHhCccchhh-cCCCCCEEEECCC
Confidence 9999999888774 45788 9999999999873
No 38
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.04 E-value=2.7e-10 Score=102.59 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=73.1
Q ss_pred EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEEe
Q 024297 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCC 232 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~ 232 (269)
+|||||+|.||+.+|+.|...|++|++|||++.+... ....+ ...+..+++++||+|+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~------------------~~~~g~~~~~~~~~~~~~aDivi~~ 62 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADE------------------LLAAGAVTAETARQVTEQADVIFTM 62 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHH------------------HHHCCCcccCCHHHHHhcCCEEEEe
Confidence 5899999999999999999999999999998644211 11111 235788999999999999
Q ss_pred cCCCccccCcC-C-HHHHhhhCCCCcEEEEccCCCC
Q 024297 233 LSLNKQTVKLC-S-SSLSSKSMFFATYVVFMFQGHG 266 (269)
Q Consensus 233 lp~t~~t~~li-~-~~~l~~~mk~ga~lIN~~RG~~ 266 (269)
+|.+++++.++ + ...+. .+++|+++||+++...
T Consensus 63 vp~~~~~~~v~~~~~~~~~-~~~~g~iivd~st~~~ 97 (291)
T TIGR01505 63 VPDSPQVEEVAFGENGIIE-GAKPGKTLVDMSSISP 97 (291)
T ss_pred cCCHHHHHHHHcCcchHhh-cCCCCCEEEECCCCCH
Confidence 99877777664 3 33567 8899999999988754
No 39
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.00 E-value=5.2e-10 Score=100.90 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=74.0
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC 231 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~ 231 (269)
++|||||+|.||+.+|+.+...|++|++||+++.+... ....+ ...+.+++++++|+|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~------------------~~~~g~~~~~~~~e~~~~~d~vi~ 64 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAE------------------VIAAGAETASTAKAVAEQCDVIIT 64 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHH------------------HHHCCCeecCCHHHHHhcCCEEEE
Confidence 58999999999999999999999999999987644110 01111 23578899999999999
Q ss_pred ecCCCccccCcCC--HHHHhhhCCCCcEEEEccCCCC
Q 024297 232 CLSLNKQTVKLCS--SSLSSKSMFFATYVVFMFQGHG 266 (269)
Q Consensus 232 ~lp~t~~t~~li~--~~~l~~~mk~ga~lIN~~RG~~ 266 (269)
++|.+++++.++. .+.+. .+++|+++||++....
T Consensus 65 ~vp~~~~~~~v~~~~~~~~~-~~~~g~iiid~st~~~ 100 (296)
T PRK11559 65 MLPNSPHVKEVALGENGIIE-GAKPGTVVIDMSSIAP 100 (296)
T ss_pred eCCCHHHHHHHHcCcchHhh-cCCCCcEEEECCCCCH
Confidence 9998887777663 23567 8999999999988653
No 40
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.98 E-value=6.9e-10 Score=104.20 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=71.2
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC--CccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA--SHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
..|+||+|+|||+|++|++.|..|+..|.+|++--|... .....+ +.....-....++++++++|
T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~-------------~kA~~dGF~v~~~~Ea~~~A 98 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASW-------------RKATENGFKVGTYEELIPQA 98 (487)
T ss_pred HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchH-------------HHHHhcCCccCCHHHHHHhC
Confidence 679999999999999999999999999998885554321 000000 00001111456899999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEE
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVF 260 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN 260 (269)
|+|++.+|.+ + ++.+.++.+. .||+|+.|.-
T Consensus 99 DvVviLlPDt-~-q~~v~~~i~p-~LK~Ga~L~f 129 (487)
T PRK05225 99 DLVINLTPDK-Q-HSDVVRAVQP-LMKQGAALGY 129 (487)
T ss_pred CEEEEcCChH-H-HHHHHHHHHh-hCCCCCEEEe
Confidence 9999999988 4 7777788999 9999998853
No 41
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.98 E-value=7.8e-09 Score=96.36 Aligned_cols=193 Identities=16% Similarity=0.090 Sum_probs=109.9
Q ss_pred CceEEEEeCCCCCHHHHhcC-CCceEEEEccccCCccchhhHhcCCcEEEecCCCCC--C-C--cchHHHHHHHHHHHHh
Q 024297 55 NYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT--G-N--AASCAELTIYLMLGLL 128 (269)
Q Consensus 55 ~~dv~i~~~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~--~-~--~~~vAE~~l~~~L~~~ 128 (269)
++|+++-- ..+.++.++.. ++--++..+....+..-.+.+.++++.......... + . -.+.|+.+=.......
T Consensus 66 ~~dii~~V-k~p~~~~~~~~~~g~~l~~~~~~a~~~~~~~~l~~~~~t~i~~e~i~~~~~~~~~l~~~~~iaG~~av~~a 144 (370)
T TIGR00518 66 DAELVLKV-KEPLPEEYGYLRHGQILFTYLHLAAERALTDALLDSGTTAIAYETVQTADGALPLLAPMSEVAGRLAAQVG 144 (370)
T ss_pred cCCEEEEe-CCCCHHHHhhcCCCcEEEEEeccCCCHHHHHHHHHcCCeEEEeeeeeccCCCCccccchhHHHHHHHHHHH
Confidence 48887742 34444445543 454555555554555555667777776665322100 0 0 0123333322221111
Q ss_pred -hcHHHHHHHHHhCCCC-CCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccc
Q 024297 129 -RKQNEMRMAIEQKKLG-VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII 206 (269)
Q Consensus 129 -R~~~~~~~~~~~~~w~-~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (269)
..+. + ...|+-. ...-..+.+++|.|+|+|.+|+.+++.|+.+|++|+++|++..+....... + +
T Consensus 145 a~~~~---~-~~~g~~~~~~~~~~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~---~----g-- 211 (370)
T TIGR00518 145 AYHLE---K-TQGGRGVLLGGVPGVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAE---F----G-- 211 (370)
T ss_pred HHHhH---h-hcCCcceeecCCCCCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHh---c----C--
Confidence 1111 0 0001000 001124677889999999999999999999999999999875431110000 0 0
Q ss_pred cccccccCCCCCHHHHHhhCCEEEEecCCC-ccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 207 DDLVDEKGCHEDIFEFASKADVVVCCLSLN-KQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 207 ~~~~~~~~~~~~l~ell~~aDvvv~~lp~t-~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
...........++.+.++++|+|+.+++.+ ..+..+++++.++ .||+++++||++
T Consensus 212 ~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~-~mk~g~vIvDva 267 (370)
T TIGR00518 212 GRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVA-QMKPGAVIVDVA 267 (370)
T ss_pred ceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcCcCHHHHh-cCCCCCEEEEEe
Confidence 000000112246788899999999998653 2356689999999 999999999987
No 42
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=98.93 E-value=1.5e-09 Score=98.27 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=73.8
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccc-cCCCCCHHHHHhhCCEEEEe
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFASKADVVVCC 232 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDvvv~~ 232 (269)
++|||||+|.||..+|+.|...|++|++||+++.+... .... .....+..++++++|+|+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~-----------------~~~~g~~~~~s~~~~~~~aDvVi~~ 64 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDA-----------------LVDKGATPAASPAQAAAGAEFVITM 64 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHH-----------------HHHcCCcccCCHHHHHhcCCEEEEe
Confidence 37999999999999999999999999999997654211 1111 01345788899999999999
Q ss_pred cCCCccccCcCCH--HHHhhhCCCCcEEEEccCCCC
Q 024297 233 LSLNKQTVKLCSS--SLSSKSMFFATYVVFMFQGHG 266 (269)
Q Consensus 233 lp~t~~t~~li~~--~~l~~~mk~ga~lIN~~RG~~ 266 (269)
+|....++..+.. ..+. .+++|.++||++.+..
T Consensus 65 vp~~~~~~~vl~~~~~i~~-~l~~g~lvid~sT~~p 99 (296)
T PRK15461 65 LPNGDLVRSVLFGENGVCE-GLSRDALVIDMSTIHP 99 (296)
T ss_pred cCCHHHHHHHHcCcccHhh-cCCCCCEEEECCCCCH
Confidence 9977667766542 3566 7899999999998763
No 43
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.92 E-value=1.9e-09 Score=97.70 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=72.5
Q ss_pred EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhh---CCEE
Q 024297 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK---ADVV 229 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~---aDvv 229 (269)
+|||||+|+||+.+|+.|...|.+|++|||+.++... ....+ ...+.++++++ +|+|
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~------------------~~~~g~~~~~s~~~~~~~~~~advV 63 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDV------------------AGKLGITARHSLEELVSKLEAPRTI 63 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHH------------------HHHCCCeecCCHHHHHHhCCCCCEE
Confidence 7999999999999999999999999999987644211 11111 23578888876 6999
Q ss_pred EEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG 266 (269)
Q Consensus 230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~ 266 (269)
++++|..+.++.+++ +.+. .+++|.++||++....
T Consensus 64 i~~vp~~~~~~~v~~-~i~~-~l~~g~ivid~st~~~ 98 (299)
T PRK12490 64 WVMVPAGEVTESVIK-DLYP-LLSPGDIVVDGGNSRY 98 (299)
T ss_pred EEEecCchHHHHHHH-HHhc-cCCCCCEEEECCCCCc
Confidence 999997767788774 4667 8999999999987654
No 44
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.91 E-value=8e-10 Score=90.45 Aligned_cols=91 Identities=26% Similarity=0.347 Sum_probs=63.5
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEE
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV 229 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvv 229 (269)
|.+|+|+|||||+.|++.|..|+..|.+|++-.|..++.. +...+.+ +..++.|+.++||+|
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~-----------------~~A~~~Gf~v~~~~eAv~~aDvV 64 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASW-----------------EKAKADGFEVMSVAEAVKKADVV 64 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHH-----------------HHHHHTT-ECCEHHHHHHC-SEE
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCH-----------------HHHHHCCCeeccHHHHHhhCCEE
Confidence 6899999999999999999999999999999988765321 1122222 457899999999999
Q ss_pred EEecCCCccccCcCCHHHHhhhCCCCcEEEE
Q 024297 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVF 260 (269)
Q Consensus 230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN 260 (269)
++.+|.. ....+..++... .||+|+.|+-
T Consensus 65 ~~L~PD~-~q~~vy~~~I~p-~l~~G~~L~f 93 (165)
T PF07991_consen 65 MLLLPDE-VQPEVYEEEIAP-NLKPGATLVF 93 (165)
T ss_dssp EE-S-HH-HHHHHHHHHHHH-HS-TT-EEEE
T ss_pred EEeCChH-HHHHHHHHHHHh-hCCCCCEEEe
Confidence 9999943 334455566666 9999998874
No 45
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.87 E-value=3.4e-09 Score=96.57 Aligned_cols=97 Identities=24% Similarity=0.291 Sum_probs=68.5
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEE
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV 229 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvv 229 (269)
|.||+|||||+|+||+++|+.|+.+|++|+++++...+.... . .+.+ ...+..+++++||+|
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~----------------a-~~~Gv~~~s~~ea~~~ADiV 63 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKK----------------A-TEDGFKVGTVEEAIPQADLI 63 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHH----------------H-HHCCCEECCHHHHHhcCCEE
Confidence 578999999999999999999999999988766543221110 0 0111 224588899999999
Q ss_pred EEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCc
Q 024297 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGV 267 (269)
Q Consensus 230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~v 267 (269)
++++|...+ ...+.++... .++++. +|.++-|--+
T Consensus 64 vLaVpp~~~-~~~v~~ei~~-~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 64 MNLLPDEVQ-HEVYEAEIQP-LLKEGK-TLGFSHGFNI 98 (314)
T ss_pred EEeCCcHhH-HHHHHHHHHh-hCCCCc-EEEEeCCccH
Confidence 999995423 3344455666 788886 7777777443
No 46
>PLN02712 arogenate dehydrogenase
Probab=98.85 E-value=3.8e-09 Score=105.18 Aligned_cols=98 Identities=24% Similarity=0.246 Sum_probs=76.1
Q ss_pred ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHh
Q 024297 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS 224 (269)
Q Consensus 147 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~ 224 (269)
.+..+.+++|||||+|.||+.+|+.|+.+|++|++|+++... .. . ...+ ...++++++.
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~-a-----------------~~~Gv~~~~~~~el~~ 423 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DE-A-----------------QKLGVSYFSDADDLCE 423 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HH-H-----------------HHcCCeEeCCHHHHHh
Confidence 456788999999999999999999999999999999987421 00 0 0111 2357888776
Q ss_pred -hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297 225 -KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 225 -~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
++|+|++|+| ...+..++.+-... .||+|+++++++-+.
T Consensus 424 ~~aDvVILavP-~~~~~~vi~~l~~~-~lk~g~ivvDv~SvK 463 (667)
T PLN02712 424 EHPEVILLCTS-ILSTEKVLKSLPFQ-RLKRSTLFVDVLSVK 463 (667)
T ss_pred cCCCEEEECCC-hHHHHHHHHHHHHh-cCCCCcEEEECCCcc
Confidence 5999999999 46778887765555 689999999998763
No 47
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.81 E-value=8.8e-09 Score=93.64 Aligned_cols=83 Identities=24% Similarity=0.254 Sum_probs=67.2
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~ 231 (269)
.+++|+|||+|.+|+++|+.|...|++|.+|+|+.. .++.++++++|+|++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------------------------~~~~~~~~~advvi~ 53 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------------------------LSLAAVLADADVIVS 53 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------------------------CCHHHHHhcCCEEEE
Confidence 457899999999999999999999999999998542 357788899999999
Q ss_pred ecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297 232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
++|. +..+.+++. .....+++++++|++++|-
T Consensus 54 ~vp~-~~~~~v~~~-l~~~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 54 AVSM-KGVRPVAEQ-VQALNLPPETIIVTATKGL 85 (308)
T ss_pred ECCh-HHHHHHHHH-HHHhcCCCCcEEEEeCCcc
Confidence 9996 467777633 2220378899999998764
No 48
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.81 E-value=7.7e-09 Score=93.71 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=71.9
Q ss_pred EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhh---CCEE
Q 024297 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK---ADVV 229 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~---aDvv 229 (269)
+|||||+|.||+.+|+.|...|.+|.+||+++.+... ..+.+ ...+.+++++. +|+|
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~------------------~~~~g~~~~~~~~e~~~~~~~~dvv 63 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEA------------------LAEEGATGADSLEELVAKLPAPRVV 63 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHH------------------HHHCCCeecCCHHHHHhhcCCCCEE
Confidence 7999999999999999999999999999998654211 11111 23567788776 6999
Q ss_pred EEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG 266 (269)
Q Consensus 230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~ 266 (269)
++++|..+.++.+++ ..+. .+++|.++|+++.+..
T Consensus 64 i~~v~~~~~~~~v~~-~l~~-~l~~g~ivid~st~~~ 98 (301)
T PRK09599 64 WLMVPAGEITDATID-ELAP-LLSPGDIVIDGGNSYY 98 (301)
T ss_pred EEEecCCcHHHHHHH-HHHh-hCCCCCEEEeCCCCCh
Confidence 999997767777764 4667 8999999999987653
No 49
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.79 E-value=1.3e-08 Score=92.41 Aligned_cols=93 Identities=22% Similarity=0.207 Sum_probs=76.6
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
.-+.||++.|.|||..|+.+|++|+++|++|+++...+-+...+ ..+ -.+...++++.+.+|+
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA----------------~Md-Gf~V~~m~~Aa~~gDi 267 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA----------------AMD-GFRVMTMEEAAKTGDI 267 (420)
T ss_pred eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH----------------hhc-CcEEEEhHHhhhcCCE
Confidence 34799999999999999999999999999999998766542111 111 1134679999999999
Q ss_pred EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
+|.+. -+++.|..+.|. .||+|+++-|+|.
T Consensus 268 fiT~T----GnkdVi~~eh~~-~MkDgaIl~N~GH 297 (420)
T COG0499 268 FVTAT----GNKDVIRKEHFE-KMKDGAILANAGH 297 (420)
T ss_pred EEEcc----CCcCccCHHHHH-hccCCeEEecccc
Confidence 99985 467999999999 9999999999985
No 50
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.75 E-value=3.9e-08 Score=88.05 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=67.9
Q ss_pred cccccCCEEEEEecCch-HHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||+|.|||.|.+ |+.++.+|...|++|+.+... ..++.+.+++|
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~------------------------------t~~l~~~~~~A 202 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK------------------------------TRDLAAHTRQA 202 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC------------------------------CCCHHHHhhhC
Confidence 46799999999999999 999999999999999997531 14688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
|+||++++ +.++++. + .+|+|+++||+|-
T Consensus 203 DIVV~avG----~~~~i~~---~-~ik~gavVIDVGi 231 (285)
T PRK14189 203 DIVVAAVG----KRNVLTA---D-MVKPGATVIDVGM 231 (285)
T ss_pred CEEEEcCC----CcCccCH---H-HcCCCCEEEEccc
Confidence 99999998 4578888 4 6899999999984
No 51
>PLN02256 arogenate dehydrogenase
Probab=98.73 E-value=1.7e-08 Score=91.73 Aligned_cols=94 Identities=30% Similarity=0.325 Sum_probs=69.0
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH-hhCCEEE
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKADVVV 230 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDvvv 230 (269)
.+++|+|||+|.||+.+|+.|+..|.+|++++++... .... ..| . ....++++++ .++|+|+
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~--~~a~-------~~g-----v---~~~~~~~e~~~~~aDvVi 97 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS--DIAA-------ELG-----V---SFFRDPDDFCEEHPDVVL 97 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH--HHHH-------HcC-----C---eeeCCHHHHhhCCCCEEE
Confidence 5679999999999999999999999999999987421 0000 000 0 1235677776 4799999
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
+++|. ..+..++.+-... .+++++++++++..
T Consensus 98 lavp~-~~~~~vl~~l~~~-~l~~~~iviDv~Sv 129 (304)
T PLN02256 98 LCTSI-LSTEAVLRSLPLQ-RLKRSTLFVDVLSV 129 (304)
T ss_pred EecCH-HHHHHHHHhhhhh-ccCCCCEEEecCCc
Confidence 99994 4666666553255 68999999999973
No 52
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.71 E-value=1.6e-08 Score=97.14 Aligned_cols=100 Identities=14% Similarity=0.056 Sum_probs=73.9
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh---CCEEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---ADVVV 230 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDvvv 230 (269)
.+||+||+|.||+.+|++|...|++|.+|||+.++...-... ..+ ..........+++++.+. +|+|+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~-----~~~----~Ga~~~~~a~s~~e~v~~l~~~dvIi 77 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-----AKK----EGNLPLYGFKDPEDFVLSIQKPRSVI 77 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHh-----hhh----cCCcccccCCCHHHHHhcCCCCCEEE
Confidence 369999999999999999999999999999987653110000 000 000000123577888775 99999
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
+++|..+.++.++ ...+. .+++|.++|+++-.
T Consensus 78 ~~v~~~~aV~~Vi-~gl~~-~l~~G~iiID~sT~ 109 (493)
T PLN02350 78 ILVKAGAPVDQTI-KALSE-YMEPGDCIIDGGNE 109 (493)
T ss_pred EECCCcHHHHHHH-HHHHh-hcCCCCEEEECCCC
Confidence 9999988888888 45788 89999999998754
No 53
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.70 E-value=2.1e-08 Score=90.55 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=68.2
Q ss_pred EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEEe
Q 024297 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCC 232 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~ 232 (269)
+|||||+|+||..+|+.|...|++|+++++++.. .. . ...+ ...+..++++++|+|+++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~--~~----------------~-~~~g~~~~~s~~~~~~~advVi~~ 62 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVA--DE----------------L-LSLGAVSVETARQVTEASDIIFIM 62 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhH--HH----------------H-HHcCCeecCCHHHHHhcCCEEEEe
Confidence 6999999999999999999999999999986532 10 1 1111 235778889999999999
Q ss_pred cCCCccccCcCCH--HHHhhhCCCCcEEEEcc
Q 024297 233 LSLNKQTVKLCSS--SLSSKSMFFATYVVFMF 262 (269)
Q Consensus 233 lp~t~~t~~li~~--~~l~~~mk~ga~lIN~~ 262 (269)
+|..++.+..+.. ..+. .+++|.++|+++
T Consensus 63 v~~~~~v~~v~~~~~g~~~-~~~~g~ivvd~s 93 (292)
T PRK15059 63 VPDTPQVEEVLFGENGCTK-ASLKGKTIVDMS 93 (292)
T ss_pred CCChHHHHHHHcCCcchhc-cCCCCCEEEECC
Confidence 9977776665532 2466 789999999986
No 54
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.69 E-value=6.3e-09 Score=77.99 Aligned_cols=89 Identities=29% Similarity=0.393 Sum_probs=62.2
Q ss_pred EEEEEecCchHHHHHHHhccCC---CEEEEE-cCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHhhCC
Q 024297 155 TVFILGFGNIGVELAKRLRPFG---VKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKAD 227 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G---~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~aD 227 (269)
||||||+|+||+++++.+...| .+|+.+ +|++++.. .....+. ...+..++++++|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~ad 63 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAA-----------------ELAKEYGVQATADDNEEAAQEAD 63 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHH-----------------HHHHHCTTEEESEEHHHHHHHTS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHH-----------------HHHHhhccccccCChHHhhccCC
Confidence 7999999999999999999999 899954 88765421 1222222 1237889999999
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
+|++++|.. ....++.. . . ...++.++|.+.=|
T Consensus 64 vvilav~p~-~~~~v~~~-i-~-~~~~~~~vis~~ag 96 (96)
T PF03807_consen 64 VVILAVKPQ-QLPEVLSE-I-P-HLLKGKLVISIAAG 96 (96)
T ss_dssp EEEE-S-GG-GHHHHHHH-H-H-HHHTTSEEEEESTT
T ss_pred EEEEEECHH-HHHHHHHH-H-h-hccCCCEEEEeCCC
Confidence 999999833 33343333 3 4 56789999988644
No 55
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.69 E-value=5.1e-07 Score=86.97 Aligned_cols=200 Identities=13% Similarity=0.040 Sum_probs=112.6
Q ss_pred CceEEEEeCCCCCHHHHhcC-CCceEEEEccccCCccchhhHhcCCcEEEecCCCC--CCCcchHHHHHHHHHHHHhhcH
Q 024297 55 NYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV--TGNAASCAELTIYLMLGLLRKQ 131 (269)
Q Consensus 55 ~~dv~i~~~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~--~~~~~~vAE~~l~~~L~~~R~~ 131 (269)
++|+++-- ..++.+-++.+ ++--+|....-..|.=-++.+.+++|.+......- + .+..+--+.-+.-++..|-.
T Consensus 64 ~adiIlkV-~~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vpris-raq~~d~lssma~iAGy~Av 141 (511)
T TIGR00561 64 QSDIILKV-NAPSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRIS-RAQKLDALSSMANIAGYRAI 141 (511)
T ss_pred cCCEEEEe-CCCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccc-cCCccCcchhhHHHHHHHHH
Confidence 67877742 45555556665 46666766665555545677888998887643110 0 11111111111223333333
Q ss_pred HHHHHHHHhCCCC--CCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhh--cccccc
Q 024297 132 NEMRMAIEQKKLG--VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV--KNGIID 207 (269)
Q Consensus 132 ~~~~~~~~~~~w~--~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 207 (269)
.+..+.+.+..-. ... ....+.++.|+|+|.+|...++.++.+|++|+++|++..+...... .+..+ .+. .+
T Consensus 142 i~Aa~~lgr~~~g~~taa-g~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~--lGa~~v~v~~-~e 217 (511)
T TIGR00561 142 IEAAHEFGRFFTGQITAA-GKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS--MGAEFLELDF-KE 217 (511)
T ss_pred HHHHHHhhhhcCCceecC-CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--cCCeEEeccc-cc
Confidence 3332222211101 111 2456789999999999999999999999999999987654211110 00000 000 00
Q ss_pred ccccc--cCC----------CCCHHHHHhhCCEEEEec--CCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 208 DLVDE--KGC----------HEDIFEFASKADVVVCCL--SLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 208 ~~~~~--~~~----------~~~l~ell~~aDvvv~~l--p~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+.... +.. ..-+.+.++++|+|+.++ |.. ..-.+++++.++ .||+|+++|+++
T Consensus 218 ~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~-~aP~Lit~emv~-~MKpGsvIVDlA 284 (511)
T TIGR00561 218 EGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGK-PAPKLITEEMVD-SMKAGSVIVDLA 284 (511)
T ss_pred cccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCC-CCCeeehHHHHh-hCCCCCEEEEee
Confidence 00000 000 011556678899999987 321 123689999999 999999999987
No 56
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.68 E-value=1.4e-08 Score=92.04 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=67.9
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHH---HHhhCCEEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE---FASKADVVV 230 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e---ll~~aDvvv 230 (269)
++|||||+|.||..+|+.|...|.+|.+|||++.+...... .| .. ...++++ .+.++|+|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~--------~g-----~~---~~~s~~~~~~~~~~~dvIi 64 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE--------DR-----TT---GVANLRELSQRLSAPRVVW 64 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------cC-----Cc---ccCCHHHHHhhcCCCCEEE
Confidence 37999999999999999999999999999998754211000 00 00 1234444 445789999
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
+++|.. .++.+++ +... .+++|.++|+++-+
T Consensus 65 ~~vp~~-~~~~v~~-~l~~-~l~~g~ivid~st~ 95 (298)
T TIGR00872 65 VMVPHG-IVDAVLE-ELAP-TLEKGDIVIDGGNS 95 (298)
T ss_pred EEcCch-HHHHHHH-HHHh-hCCCCCEEEECCCC
Confidence 999976 7777774 4667 89999999998765
No 57
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.67 E-value=1.2e-07 Score=78.86 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=68.3
Q ss_pred ccccCCEEEEEecCch-HHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297 149 ETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (269)
.++.|++|.|||.|.+ |+.+|+.|...|++|++++|+. +++.+.++++|
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------------------------~~l~~~l~~aD 89 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------------------------KNLKEHTKQAD 89 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------------------------hhHHHHHhhCC
Confidence 5699999999999996 8889999999999999998742 36778999999
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS 268 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd 268 (269)
+||++.+.. ++++++. ++++.++|++|...-+|
T Consensus 90 iVIsat~~~----~ii~~~~----~~~~~viIDla~prdvd 122 (168)
T cd01080 90 IVIVAVGKP----GLVKGDM----VKPGAVVIDVGINRVPD 122 (168)
T ss_pred EEEEcCCCC----ceecHHH----ccCCeEEEEccCCCccc
Confidence 999998632 3788864 56799999999766543
No 58
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.66 E-value=1.7e-08 Score=80.93 Aligned_cols=106 Identities=20% Similarity=0.240 Sum_probs=73.8
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (269)
.++.++++.|||.|.+|+.++..|...|++ |++++|+.++...-... + .+ ..-.....+++.+.+.++|
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~---~---~~----~~~~~~~~~~~~~~~~~~D 77 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEE---F---GG----VNIEAIPLEDLEEALQEAD 77 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHH---H---TG----CSEEEEEGGGHCHHHHTES
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHH---c---Cc----cccceeeHHHHHHHHhhCC
Confidence 479999999999999999999999999996 99999987552111100 0 00 0001113467888999999
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCCc-EEEEccCCCCcc
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFAT-YVVFMFQGHGVS 268 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga-~lIN~~RG~~vd 268 (269)
+|+++.|.. ...++++.++ ..++.. +++++|...=||
T Consensus 78 ivI~aT~~~---~~~i~~~~~~-~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 78 IVINATPSG---MPIITEEMLK-KASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp EEEE-SSTT---STSSTHHHHT-TTCHHCSEEEES-SS-SB-
T ss_pred eEEEecCCC---CcccCHHHHH-HHHhhhhceeccccCCCCC
Confidence 999997744 3488998888 555444 999998765554
No 59
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.64 E-value=1.3e-07 Score=85.24 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=66.2
Q ss_pred cccccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||+|+|||.| .||+.+|.+|...|++|+.+++.. .++.++.++|
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t------------------------------~~l~e~~~~A 203 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS------------------------------TDAKALCRQA 203 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC------------------------------CCHHHHHhcC
Confidence 468999999999996 999999999999999999997532 3678999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+|+++++.. +++... .+|+|+++|++|
T Consensus 204 DIVIsavg~~----~~v~~~----~ik~GaiVIDvg 231 (301)
T PRK14194 204 DIVVAAVGRP----RLIDAD----WLKPGAVVIDVG 231 (301)
T ss_pred CEEEEecCCh----hcccHh----hccCCcEEEEec
Confidence 9999999843 566663 478999999998
No 60
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.63 E-value=3.5e-08 Score=87.85 Aligned_cols=93 Identities=22% Similarity=0.231 Sum_probs=71.8
Q ss_pred cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCC
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD 227 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD 227 (269)
+.+.++||+||+|.||..++..|...|++|++|||+.++. ..+.+.+ ..++-.|+.+.||
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~------------------~~f~~~Ga~v~~sPaeVae~sD 93 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKC------------------KEFQEAGARVANSPAEVAEDSD 93 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHH------------------HHHHHhchhhhCCHHHHHhhcC
Confidence 4568899999999999999999999999999999987662 1222223 3467889999999
Q ss_pred EEEEecCCCccccCcCCH--HHHhhhCCCCcEE-EEc
Q 024297 228 VVVCCLSLNKQTVKLCSS--SLSSKSMFFATYV-VFM 261 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~--~~l~~~mk~ga~l-IN~ 261 (269)
+|+.++|...+.+.++.. ..|+ ..++|... |+.
T Consensus 94 vvitmv~~~~~v~~v~~g~~Gvl~-g~~~g~~~~vDm 129 (327)
T KOG0409|consen 94 VVITMVPNPKDVKDVLLGKSGVLS-GIRPGKKATVDM 129 (327)
T ss_pred EEEEEcCChHhhHHHhcCCCccee-eccCCCceEEec
Confidence 999999988887776533 2455 56676554 554
No 61
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.63 E-value=2.8e-08 Score=89.45 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=67.6
Q ss_pred EEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEEecCC
Q 024297 158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSL 235 (269)
Q Consensus 158 IiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~ 235 (269)
|||+|.||..+|+.|...|.+|++|||+..+... ....+ ...+..++++++|+|++++|.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~------------------l~~~g~~~~~s~~~~~~~advVil~vp~ 62 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEE------------------AVAAGAQAAASPAEAAEGADRVITMLPA 62 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHH------------------HHHcCCeecCCHHHHHhcCCEEEEeCCC
Confidence 6899999999999999999999999987654211 11111 235788999999999999997
Q ss_pred CccccCcCC--HHHHhhhCCCCcEEEEcc
Q 024297 236 NKQTVKLCS--SSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 236 t~~t~~li~--~~~l~~~mk~ga~lIN~~ 262 (269)
.++++.++. ...+. .+++|.++||++
T Consensus 63 ~~~~~~v~~g~~~l~~-~~~~g~~vid~s 90 (288)
T TIGR01692 63 GQHVISVYSGDEGILP-KVAKGSLLIDCS 90 (288)
T ss_pred hHHHHHHHcCcchHhh-cCCCCCEEEECC
Confidence 677777662 34666 789999999987
No 62
>PLN02858 fructose-bisphosphate aldolase
Probab=98.63 E-value=4e-08 Score=104.65 Aligned_cols=92 Identities=21% Similarity=0.145 Sum_probs=74.9
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEE
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV 229 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvv 229 (269)
+.++||+||+|.||..+|++|...|++|.+|||++.+.. .+.+.+ ...+..++.++||+|
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~------------------~l~~~Ga~~~~s~~e~a~~advV 64 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLME------------------KFCELGGHRCDSPAEAAKDAAAL 64 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHH------------------HHHHcCCeecCCHHHHHhcCCEE
Confidence 457899999999999999999999999999999876521 111111 346899999999999
Q ss_pred EEecCCCccccCcC--CHHHHhhhCCCCcEEEEcc
Q 024297 230 VCCLSLNKQTVKLC--SSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 230 v~~lp~t~~t~~li--~~~~l~~~mk~ga~lIN~~ 262 (269)
++++|..++++.++ ....+. .+++|.++|+++
T Consensus 65 i~~l~~~~~v~~V~~g~~g~~~-~l~~g~iivd~S 98 (1378)
T PLN02858 65 VVVLSHPDQVDDVFFGDEGAAK-GLQKGAVILIRS 98 (1378)
T ss_pred EEEcCChHHHHHHHhchhhHHh-cCCCcCEEEECC
Confidence 99999888888876 344677 899999999986
No 63
>PLN02858 fructose-bisphosphate aldolase
Probab=98.63 E-value=3.6e-08 Score=104.97 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=74.2
Q ss_pred CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEE
Q 024297 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC 231 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~ 231 (269)
.++|||||+|.||..+|+.|...|++|++||+++.+... ...... ...+..+++++||+|++
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~-----------------l~~~Ga~~~~s~~e~~~~aDvVi~ 386 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVR-----------------FENAGGLAGNSPAEVAKDVDVLVI 386 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-----------------HHHcCCeecCCHHHHHhcCCEEEE
Confidence 488999999999999999999999999999987654211 111101 23678899999999999
Q ss_pred ecCCCccccCcC--CHHHHhhhCCCCcEEEEccC
Q 024297 232 CLSLNKQTVKLC--SSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 232 ~lp~t~~t~~li--~~~~l~~~mk~ga~lIN~~R 263 (269)
++|..++++.++ +...+. .+++|.++|+++-
T Consensus 387 ~V~~~~~v~~Vl~g~~g~~~-~l~~g~ivVd~ST 419 (1378)
T PLN02858 387 MVANEVQAENVLFGDLGAVS-ALPAGASIVLSST 419 (1378)
T ss_pred ecCChHHHHHHHhchhhHHh-cCCCCCEEEECCC
Confidence 999888888876 345678 8999999999864
No 64
>PLN02712 arogenate dehydrogenase
Probab=98.61 E-value=4.5e-08 Score=97.58 Aligned_cols=93 Identities=27% Similarity=0.304 Sum_probs=70.0
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHH-hh
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA-SK 225 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell-~~ 225 (269)
..-+.++|||||+|.||+.+|+.|+.+|++|++++++.... . ....+ ...++++++ .+
T Consensus 48 ~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~-~------------------A~~~Gv~~~~d~~e~~~~~ 108 (667)
T PLN02712 48 DNTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSL-A------------------ARSLGVSFFLDPHDLCERH 108 (667)
T ss_pred ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHH-H------------------HHHcCCEEeCCHHHHhhcC
Confidence 34455789999999999999999999999999999863221 0 11111 235677765 46
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+|+|++|+|. ..+..++..-.+. .++++++|++++
T Consensus 109 aDvViLavP~-~~~~~vl~~l~~~-~l~~g~iVvDv~ 143 (667)
T PLN02712 109 PDVILLCTSI-ISTENVLKSLPLQ-RLKRNTLFVDVL 143 (667)
T ss_pred CCEEEEcCCH-HHHHHHHHhhhhh-cCCCCeEEEECC
Confidence 9999999994 4677777664446 799999999996
No 65
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.58 E-value=6.6e-08 Score=92.69 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=74.2
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh---hCCEEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS---KADVVV 230 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDvvv 230 (269)
.+|||||+|.||..+|+.|...|++|.+|||+.++....... -.+ ... ......++++++. ++|+|+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~-----~~~----~g~-~i~~~~s~~e~v~~l~~~d~Ii 71 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKK-----AKE----GNT-RVKGYHTLEELVNSLKKPRKVI 71 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh-----hhh----cCC-cceecCCHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999987652111000 000 000 0112467888886 589999
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
+++|..+.++.+++ +.+. .+++|.++|+.+-+.
T Consensus 72 l~v~~~~~v~~vi~-~l~~-~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 72 LLIKAGEAVDETID-NLLP-LLEKGDIIIDGGNEW 104 (470)
T ss_pred EEeCChHHHHHHHH-HHHh-hCCCCCEEEECCCCC
Confidence 99998888888884 4777 899999999998653
No 66
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.55 E-value=1.1e-07 Score=81.45 Aligned_cols=95 Identities=22% Similarity=0.212 Sum_probs=66.9
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHh-h
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS-K 225 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-~ 225 (269)
+.++.|++++|+|+|++|+.+|+.|..+|++|+++|++...... ....++ ...+.++++. +
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~-----------------~~~~~g~~~v~~~~l~~~~ 85 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVAR-----------------AAELFGATVVAPEEIYSVD 85 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH-----------------HHHHcCCEEEcchhhcccc
Confidence 46799999999999999999999999999999999987543110 001101 1112345554 8
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG 266 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~ 266 (269)
+|+++.+.. .++++++.++ .|+. .+++--+=+++
T Consensus 86 ~Dv~vp~A~-----~~~I~~~~~~-~l~~-~~v~~~AN~~~ 119 (200)
T cd01075 86 ADVFAPCAL-----GGVINDDTIP-QLKA-KAIAGAANNQL 119 (200)
T ss_pred CCEEEeccc-----ccccCHHHHH-HcCC-CEEEECCcCcc
Confidence 999987754 3689999998 8874 45665555544
No 67
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.53 E-value=3.5e-08 Score=81.12 Aligned_cols=105 Identities=16% Similarity=0.197 Sum_probs=64.3
Q ss_pred EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecC
Q 024297 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS 234 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp 234 (269)
+|+|+|.|++|.++|..|...|.+|..|.|+.+....-........+..+ ........-..+++++++.+|+|++++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~--~~l~~~i~~t~dl~~a~~~ad~IiiavP 78 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPG--IKLPENIKATTDLEEALEDADIIIIAVP 78 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTT--SBEETTEEEESSHHHHHTT-SEEEE-S-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCC--cccCcccccccCHHHHhCcccEEEeccc
Confidence 68999999999999999999999999999875321110000000001111 0111111124689999999999999999
Q ss_pred CCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 235 LNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 235 ~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
.. ..+.++.. ... .++++..+|++..|
T Consensus 79 s~-~~~~~~~~-l~~-~l~~~~~ii~~~KG 105 (157)
T PF01210_consen 79 SQ-AHREVLEQ-LAP-YLKKGQIIISATKG 105 (157)
T ss_dssp GG-GHHHHHHH-HTT-TSHTT-EEEETS-S
T ss_pred HH-HHHHHHHH-Hhh-ccCCCCEEEEecCC
Confidence 43 33444333 334 67889999999877
No 68
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.53 E-value=1.8e-07 Score=83.33 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=75.4
Q ss_pred cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv 229 (269)
-+.||.+.|.|||.+|+..|+.|++||++|++....+-...++. -+-.+...++|+.++.|++
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAa-----------------MeG~~V~tm~ea~~e~dif 273 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAA-----------------MEGYEVTTLEEAIREVDIF 273 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHH-----------------hhccEeeeHHHhhhcCCEE
Confidence 46899999999999999999999999999999876553321111 0111457899999999999
Q ss_pred EEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
|.+. -.+.+|..+.|. +||.++++-|+|.-
T Consensus 274 VTtT----Gc~dii~~~H~~-~mk~d~IvCN~Ghf 303 (434)
T KOG1370|consen 274 VTTT----GCKDIITGEHFD-QMKNDAIVCNIGHF 303 (434)
T ss_pred EEcc----CCcchhhHHHHH-hCcCCcEEeccccc
Confidence 9875 467899999999 99999999999864
No 69
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.53 E-value=6.9e-08 Score=87.14 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=70.4
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccc---cchhhhccccccc-----cccccCCCCCHHHHHhh
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIIDD-----LVDEKGCHEDIFEFASK 225 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~ 225 (269)
++|+|||.|.||..+|+.+...|++|++||++.......... ........|.+.. ........++. +.+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD 83 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence 689999999999999999999999999999876542100000 0000001111000 00000012344 56899
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEE-EccC
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVV-FMFQ 263 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lI-N~~R 263 (269)
||+|+.++|..++.+..+-++... .++++++|+ |++-
T Consensus 84 aD~Vieav~e~~~~k~~v~~~l~~-~~~~~~il~s~tS~ 121 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLFSELDR-ICKPSAILASNTSS 121 (295)
T ss_pred CCEEEEcCccCHHHHHHHHHHHHh-hCCCCcEEEECCCC
Confidence 999999999888887776666666 899999987 6654
No 70
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.53 E-value=3.9e-07 Score=81.74 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=66.8
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||.|. +|+.+|.+|...|++|+.+++.. .++.+.+++|
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------------------------~~l~~~~~~A 202 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------------------------KDMASYLKDA 202 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHHhhC
Confidence 3579999999999999 99999999999999999987521 3688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
|+|+++++- .++++++ .+|+|+++|++|=
T Consensus 203 DIVIsAvg~----p~~i~~~----~vk~gavVIDvGi 231 (286)
T PRK14175 203 DVIVSAVGK----PGLVTKD----VVKEGAVIIDVGN 231 (286)
T ss_pred CEEEECCCC----CcccCHH----HcCCCcEEEEcCC
Confidence 999999973 3578874 4688999999984
No 71
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.51 E-value=1.1e-07 Score=85.34 Aligned_cols=90 Identities=22% Similarity=0.329 Sum_probs=62.4
Q ss_pred EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecC
Q 024297 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS 234 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp 234 (269)
+|+|||+|.||..+|..|+..|.+|++|+++........ ..|. ... ...+. +.++++|+|++++|
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~--------~~g~----~~~--~~~~~-~~~~~aDlVilavp 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI--------ERGL----VDE--ASTDL-SLLKDCDLVILALP 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH--------HCCC----ccc--ccCCH-hHhcCCCEEEEcCC
Confidence 799999999999999999999999999998654311100 0110 000 11233 46789999999999
Q ss_pred CCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 235 LNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 235 ~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
.. ....++ ++... .+++++++++++
T Consensus 67 ~~-~~~~~~-~~l~~-~l~~~~ii~d~~ 91 (279)
T PRK07417 67 IG-LLLPPS-EQLIP-ALPPEAIVTDVG 91 (279)
T ss_pred HH-HHHHHH-HHHHH-hCCCCcEEEeCc
Confidence 43 333443 34556 789999999886
No 72
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.51 E-value=4.7e-07 Score=84.61 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=63.9
Q ss_pred cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv 230 (269)
..++|+||| +|.||..+|+.|+..|.+|.+++++.. .+.++++++||+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-----------------------------~~~~~~~~~aDlVi 147 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-----------------------------DRAEDILADAGMVI 147 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-----------------------------hhHHHHHhcCCEEE
Confidence 458999999 999999999999999999999997421 24567889999999
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
+++|.. .+..++. .+. .+++|+++++++-
T Consensus 148 lavP~~-~~~~~~~--~l~-~l~~~~iv~Dv~S 176 (374)
T PRK11199 148 VSVPIH-LTEEVIA--RLP-PLPEDCILVDLTS 176 (374)
T ss_pred EeCcHH-HHHHHHH--HHh-CCCCCcEEEECCC
Confidence 999965 3455552 356 4899999999964
No 73
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.50 E-value=1.3e-07 Score=90.64 Aligned_cols=97 Identities=11% Similarity=0.124 Sum_probs=69.9
Q ss_pred EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH---hhCCEEEE
Q 024297 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA---SKADVVVC 231 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDvvv~ 231 (269)
.|||||+|.||..+|+.|...|++|.+|||+..+....... ..+| .......+++++. +++|+|++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~-----~~~g------~~~~~~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE-----HAKG------KKIVGAYSIEEFVQSLERPRKIML 69 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh-----ccCC------CCceecCCHHHHHhhcCCCCEEEE
Confidence 38999999999999999999999999999987653111000 0000 0001224556655 46899999
Q ss_pred ecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
++|..+.+..+++ +.+. .+++|.++|+.+-.
T Consensus 70 ~v~~~~~v~~Vi~-~l~~-~L~~g~iIID~gns 100 (467)
T TIGR00873 70 MVKAGAPVDAVIN-QLLP-LLEKGDIIIDGGNS 100 (467)
T ss_pred ECCCcHHHHHHHH-HHHh-hCCCCCEEEECCCc
Confidence 9998777888774 4667 89999999999754
No 74
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.48 E-value=1e-07 Score=85.86 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=68.9
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccc---hhhhcccccccc-----ccccCCCCCHHHHHhh
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS---ALAVKNGIIDDL-----VDEKGCHEDIFEFASK 225 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~l~ell~~ 225 (269)
++|+|||.|.||..+|..+...|++|++||++............ ......|.+... ........++.+.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 58999999999999999999999999999987654211100000 000001111000 0000123578889999
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEE-EEccC
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYV-VFMFQ 263 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~l-IN~~R 263 (269)
||+|+.++|...+.+..+-.+..+ .+++++++ +|++-
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~-~~~~~~il~~~tSt 119 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADA-HAPAECYIATNTST 119 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHh-hCCCCcEEEEcCCC
Confidence 999999999766554433333455 78999877 67763
No 75
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.47 E-value=2.2e-07 Score=82.43 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=65.8
Q ss_pred CEEEEEecCchHHHHHHHhccCCC----EEEEE-cCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhC
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGV----KIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKA 226 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~a 226 (269)
.+|||||+|+||.++++.|...|. +|+++ +|+..+.. . ....+ ...+..++++++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~-~-----------------~~~~g~~~~~~~~e~~~~a 62 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRD-V-----------------FQSLGVKTAASNTEVVKSS 62 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHH-H-----------------HHHcCCEEeCChHHHHhcC
Confidence 379999999999999999998887 89999 87654411 1 11111 235677888999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
|+|++++| .+..+.++. +... .++++.++|++.-|
T Consensus 63 DvVil~v~-~~~~~~vl~-~l~~-~~~~~~~iIs~~~g 97 (266)
T PLN02688 63 DVIILAVK-PQVVKDVLT-ELRP-LLSKDKLLVSVAAG 97 (266)
T ss_pred CEEEEEEC-cHHHHHHHH-HHHh-hcCCCCEEEEecCC
Confidence 99999997 555666653 3445 67889999987555
No 76
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.47 E-value=3.6e-07 Score=74.17 Aligned_cols=97 Identities=21% Similarity=0.213 Sum_probs=67.1
Q ss_pred cccCCEEEEEecCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccc--cCCCCCHHHHHhhC
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KGCHEDIFEFASKA 226 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~a 226 (269)
.+.+++++|+|.|.+|+.+++.+...| .+|.+++++..+...... ..... .....+..++++++
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 82 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAE-------------RFGELGIAIAYLDLEELLAEA 82 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH-------------HHhhcccceeecchhhccccC
Confidence 467889999999999999999999886 789999987654211000 00000 01235677778999
Q ss_pred CEEEEecCCCcc-ccC-cCCHHHHhhhCCCCcEEEEccC
Q 024297 227 DVVVCCLSLNKQ-TVK-LCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 227 Dvvv~~lp~t~~-t~~-li~~~~l~~~mk~ga~lIN~~R 263 (269)
|+|++++|.... ... .+.. . .++++.++++++-
T Consensus 83 Dvvi~~~~~~~~~~~~~~~~~---~-~~~~~~~v~D~~~ 117 (155)
T cd01065 83 DLIINTTPVGMKPGDELPLPP---S-LLKPGGVVYDVVY 117 (155)
T ss_pred CEEEeCcCCCCCCCCCCCCCH---H-HcCCCCEEEEcCc
Confidence 999999997653 222 2222 3 5789999999864
No 77
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.46 E-value=2.4e-07 Score=82.89 Aligned_cols=108 Identities=20% Similarity=0.194 Sum_probs=79.1
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCC
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD 227 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD 227 (269)
......+|.|||.|-+|...|+.+.++|.+|+..|++.++- ...+ ........... +...+++.+.++|
T Consensus 164 pGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl-~~ld---------d~f~~rv~~~~st~~~iee~v~~aD 233 (371)
T COG0686 164 PGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRL-RQLD---------DLFGGRVHTLYSTPSNIEEAVKKAD 233 (371)
T ss_pred CCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHH-hhhh---------HhhCceeEEEEcCHHHHHHHhhhcc
Confidence 34667789999999999999999999999999999986541 1110 00000111111 4467999999999
Q ss_pred EEEEecCCC-ccccCcCCHHHHhhhCCCCcEEEEcc--CCCCc
Q 024297 228 VVVCCLSLN-KQTVKLCSSSLSSKSMFFATYVVFMF--QGHGV 267 (269)
Q Consensus 228 vvv~~lp~t-~~t~~li~~~~l~~~mk~ga~lIN~~--RG~~v 267 (269)
+||.++--+ .+.-.++.+++++ .||||+++|+++ .|.++
T Consensus 234 lvIgaVLIpgakaPkLvt~e~vk-~MkpGsVivDVAiDqGGc~ 275 (371)
T COG0686 234 LVIGAVLIPGAKAPKLVTREMVK-QMKPGSVIVDVAIDQGGCF 275 (371)
T ss_pred EEEEEEEecCCCCceehhHHHHH-hcCCCcEEEEEEEcCCCce
Confidence 999886433 3455688998899 999999999998 55554
No 78
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.45 E-value=1.6e-07 Score=83.98 Aligned_cols=95 Identities=17% Similarity=0.286 Sum_probs=68.7
Q ss_pred CEEEEEecCchHHHHHHHhccCCC----EEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCC
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD 227 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD 227 (269)
++|||||+|+||+++++.|...|. +|++++|+..+.. ......+ ...+..+++.+||
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~-----------------~l~~~~g~~~~~~~~e~~~~aD 65 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLK-----------------NASDKYGITITTNNNEVANSAD 65 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHH-----------------HHHHhcCcEEeCCcHHHHhhCC
Confidence 589999999999999999987664 6999998764411 1111111 2356778899999
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS 268 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd 268 (269)
+|++++| ......++. +... .++++.++|.+.=|--++
T Consensus 66 iIiLavk-P~~~~~vl~-~l~~-~~~~~~lvISi~AGi~i~ 103 (272)
T PRK12491 66 ILILSIK-PDLYSSVIN-QIKD-QIKNDVIVVTIAAGKSIK 103 (272)
T ss_pred EEEEEeC-hHHHHHHHH-HHHH-hhcCCcEEEEeCCCCcHH
Confidence 9999999 456666653 2434 678899999998875543
No 79
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.44 E-value=2.2e-07 Score=86.35 Aligned_cols=96 Identities=24% Similarity=0.308 Sum_probs=65.7
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l 233 (269)
++|+|||+|.||..+|+.|+..|.+|.+++++........ ...-| ..+. ...++++++++||+|++++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~------a~~~~----~~~~--~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLAR------ALGFG----VIDE--LAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHH------HhcCC----CCcc--cccCHHHHhcCCCEEEEeC
Confidence 4799999999999999999999999888887654421100 00000 0010 1256788899999999999
Q ss_pred CCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
|. ..+..++.+ .....+++++++.+++-
T Consensus 69 P~-~~~~~vl~~-l~~~~l~~~~ivtDv~S 96 (359)
T PRK06545 69 PV-DATAALLAE-LADLELKPGVIVTDVGS 96 (359)
T ss_pred CH-HHHHHHHHH-HhhcCCCCCcEEEeCcc
Confidence 95 456666533 32202788999988764
No 80
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.43 E-value=8.5e-07 Score=80.06 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=64.4
Q ss_pred cccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEc-CCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh
Q 024297 148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATK-RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK 225 (269)
Q Consensus 148 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 225 (269)
+.++.||+|+||| .|.+|+.+|.+|...|+.|++++ ++ .++++++++
T Consensus 153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT-------------------------------~~l~e~~~~ 201 (296)
T PRK14188 153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRT-------------------------------RDLPAVCRR 201 (296)
T ss_pred CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCC-------------------------------CCHHHHHhc
Confidence 3579999999999 99999999999999999999995 32 257789999
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
||+|+++++.. +++... .+|+|+++|++|
T Consensus 202 ADIVIsavg~~----~~v~~~----~lk~GavVIDvG 230 (296)
T PRK14188 202 ADILVAAVGRP----EMVKGD----WIKPGATVIDVG 230 (296)
T ss_pred CCEEEEecCCh----hhcchh----eecCCCEEEEcC
Confidence 99999999843 355552 478999999998
No 81
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.43 E-value=4.2e-07 Score=84.58 Aligned_cols=83 Identities=19% Similarity=0.182 Sum_probs=63.7
Q ss_pred ccCCEEEEEec-CchHHHHHHHhcc-CCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297 151 LLGKTVFILGF-GNIGVELAKRLRP-FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 151 l~g~~vgIiG~-G~iG~~~a~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
+...||+|||+ |.||+.+|+.|+. +|.+|+++|+... ...++.+.+++||+
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------------------------~~~~~~~~v~~aDl 54 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------------------------GSLDPATLLQRADV 54 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------------------------ccCCHHHHhcCCCE
Confidence 35679999999 9999999999995 5999999997421 12467788999999
Q ss_pred EEEecCCCccccCcCCHHHHh--hhCCCCcEEEEcc
Q 024297 229 VVCCLSLNKQTVKLCSSSLSS--KSMFFATYVVFMF 262 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~--~~mk~ga~lIN~~ 262 (269)
|++|+|.. .+..++.+ ... ..+++++++.+++
T Consensus 55 VilavPv~-~~~~~l~~-l~~~~~~l~~~~iVtDVg 88 (370)
T PRK08818 55 LIFSAPIR-HTAALIEE-YVALAGGRAAGQLWLDVT 88 (370)
T ss_pred EEEeCCHH-HHHHHHHH-HhhhhcCCCCCeEEEECC
Confidence 99999944 45555443 222 0379999999987
No 82
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.42 E-value=2.7e-07 Score=83.80 Aligned_cols=94 Identities=21% Similarity=0.355 Sum_probs=65.2
Q ss_pred CCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297 153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv 230 (269)
.++|+|||+|.||..+|+.|+..|. +|++++++........ ..|. ... ...++++.++++|+|+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~--------~~g~----~~~--~~~~~~~~~~~aDvVi 71 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR--------ELGL----GDR--VTTSAAEAVKGADLVI 71 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH--------hCCC----Cce--ecCCHHHHhcCCCEEE
Confidence 4689999999999999999998885 8999998754311100 0010 000 1246778889999999
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
+++|.. .+..++ ++... .+++++++++++-
T Consensus 72 iavp~~-~~~~v~-~~l~~-~l~~~~iv~dvgs 101 (307)
T PRK07502 72 LCVPVG-ASGAVA-AEIAP-HLKPGAIVTDVGS 101 (307)
T ss_pred ECCCHH-HHHHHH-HHHHh-hCCCCCEEEeCcc
Confidence 999953 333333 33455 7899999998864
No 83
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.41 E-value=4e-07 Score=81.60 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=66.7
Q ss_pred cCCEEEEEecCchHHHHHHHhccCC----CEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhh
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK 225 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~ 225 (269)
.+.+|+|||+|+||+++++.|...| .+|++++|+..+.... ....++ ...+..+++.+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~----------------l~~~~g~~~~~~~~e~~~~ 65 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQE----------------LHQKYGVKGTHNKKELLTD 65 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHH----------------HHHhcCceEeCCHHHHHhc
Confidence 3568999999999999999999877 6899999865332111 111111 23567788999
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
||+|++++| +.+....+ .+... .++++.++|++.-|-
T Consensus 66 aDvVilav~-p~~~~~vl-~~l~~-~~~~~~liIs~~aGi 102 (279)
T PRK07679 66 ANILFLAMK-PKDVAEAL-IPFKE-YIHNNQLIISLLAGV 102 (279)
T ss_pred CCEEEEEeC-HHHHHHHH-HHHHh-hcCCCCEEEEECCCC
Confidence 999999999 44444544 33445 678899999985543
No 84
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.41 E-value=2.7e-06 Score=70.19 Aligned_cols=78 Identities=24% Similarity=0.303 Sum_probs=56.9
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||-+. +|+.++.+|...|+.|+.+..+ ..++++.+++|
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~------------------------------T~~l~~~~~~A 80 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK------------------------------TKNLQEITRRA 80 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT------------------------------SSSHHHHHTTS
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC------------------------------CCcccceeeec
Confidence 4579999999999995 9999999999999999998642 14788999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
|+|++++. ..++|..+ .+|+|+++|++|-
T Consensus 81 DIVVsa~G----~~~~i~~~----~ik~gavVIDvG~ 109 (160)
T PF02882_consen 81 DIVVSAVG----KPNLIKAD----WIKPGAVVIDVGI 109 (160)
T ss_dssp SEEEE-SS----STT-B-GG----GS-TTEEEEE--C
T ss_pred cEEeeeec----cccccccc----cccCCcEEEecCC
Confidence 99999986 24677764 5789999999874
No 85
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.40 E-value=3e-06 Score=81.90 Aligned_cols=199 Identities=13% Similarity=0.083 Sum_probs=111.3
Q ss_pred CceEEEEeCCCCCHHHHhcCC-CceEEEEccccCCccchhhHhcCCcEEEecCCCC--C-CC----cchHHHHHHHHHHH
Q 024297 55 NYHLCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV--T-GN----AASCAELTIYLMLG 126 (269)
Q Consensus 55 ~~dv~i~~~~~~~~~~l~~~~-~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~--~-~~----~~~vAE~~l~~~L~ 126 (269)
++|+++-- ..++.+-++.++ +--+|..+....+.=-++.+.++||.+......- + +. =.++|+.+
T Consensus 65 ~~diilkV-~~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IA------ 137 (509)
T PRK09424 65 QSDIILKV-NAPSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIA------ 137 (509)
T ss_pred cCCEEEEe-CCCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhh------
Confidence 68888742 355555566654 5667776666556555677888998887632211 0 00 01233322
Q ss_pred HhhcHHHHHHHHHhCCCCCC---ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcc
Q 024297 127 LLRKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKN 203 (269)
Q Consensus 127 ~~R~~~~~~~~~~~~~w~~~---~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~ 203 (269)
.+|-+.+..+.+ ++.... ......+.+|.|+|.|.+|...++.++.+|++|+++|++..+.......-..+...+
T Consensus 138 Gy~Av~~aa~~~--~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 138 GYRAVIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred HHHHHHHHHHHh--cccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEec
Confidence 233332222221 111111 012457999999999999999999999999999999987655322211100000000
Q ss_pred ccccccccc-cC--CCCC--------HHHHHhhCCEEEEecCCCcc-ccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 204 GIIDDLVDE-KG--CHED--------IFEFASKADVVVCCLSLNKQ-TVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 204 ~~~~~~~~~-~~--~~~~--------l~ell~~aDvvv~~lp~t~~-t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
...++.... +. ...+ +.+.++.+|+|+.+...... ...++.++.++ .||+|+++|++|=
T Consensus 216 ~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~-~mkpGgvIVdvg~ 286 (509)
T PRK09424 216 FEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVA-SMKPGSVIVDLAA 286 (509)
T ss_pred cccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHH-hcCCCCEEEEEcc
Confidence 000000000 00 0011 12223579999999864321 23466788999 9999999999983
No 86
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.39 E-value=4.7e-07 Score=82.92 Aligned_cols=103 Identities=21% Similarity=0.120 Sum_probs=68.8
Q ss_pred CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~ 232 (269)
..+|+|||.|.||..+|..|...|.+|++|+|+.+.............+..|. ..........++.++++.+|+|+++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~--~~~~~~~~~~~~~e~~~~aD~Vi~~ 81 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGV--ALPAELYPTADPEEALAGADFAVVA 81 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCC--cCCCCeEEeCCHHHHHcCCCEEEEE
Confidence 35899999999999999999999999999999654311100000000000010 0000011235788889999999999
Q ss_pred cCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
+|.. ++ ++.++ .++++.++|+++.|
T Consensus 82 v~~~-~~-----~~v~~-~l~~~~~vi~~~~G 106 (328)
T PRK14618 82 VPSK-AL-----RETLA-GLPRALGYVSCAKG 106 (328)
T ss_pred CchH-HH-----HHHHH-hcCcCCEEEEEeec
Confidence 9955 22 55667 89999999999887
No 87
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.38 E-value=1.6e-06 Score=77.74 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=65.3
Q ss_pred cccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||+|+|||. |.+|+.+|.+|...|++|+.+.. + ..++.+.+++|
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s---~---------------------------t~~l~~~~~~A 202 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHS---R---------------------------TRNLAEVARKA 202 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECC---C---------------------------CCCHHHHHhhC
Confidence 46799999999999 99999999999999999999831 1 13688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+|+++++.. +++..+ .+|+|+++|++|
T Consensus 203 DIVI~avg~~----~~v~~~----~ik~GavVIDvg 230 (284)
T PRK14179 203 DILVVAIGRG----HFVTKE----FVKEGAVVIDVG 230 (284)
T ss_pred CEEEEecCcc----ccCCHH----HccCCcEEEEec
Confidence 9999999843 566663 478999999997
No 88
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.37 E-value=4.9e-07 Score=86.17 Aligned_cols=90 Identities=20% Similarity=0.300 Sum_probs=67.2
Q ss_pred CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEE
Q 024297 154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVV 230 (269)
Q Consensus 154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv 230 (269)
++|+||| +|.||+.+|+.|+..|.+|++++++...... .....+ ...+..+.+.++|+|+
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~-----------------~a~~~gv~~~~~~~e~~~~aDvVI 63 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKE-----------------VAKELGVEYANDNIDAAKDADIVI 63 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHH-----------------HHHHcCCeeccCHHHHhccCCEEE
Confidence 3799998 8999999999999999999999987543100 111111 2346778899999999
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
+++|. ..+..++ ++... .+++++++++++-
T Consensus 64 lavp~-~~~~~vl-~~l~~-~l~~~~iViDvsS 93 (437)
T PRK08655 64 ISVPI-NVTEDVI-KEVAP-HVKEGSLLMDVTS 93 (437)
T ss_pred EecCH-HHHHHHH-HHHHh-hCCCCCEEEEccc
Confidence 99995 3555555 33556 7899999999985
No 89
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.36 E-value=4.7e-07 Score=85.76 Aligned_cols=102 Identities=23% Similarity=0.324 Sum_probs=73.3
Q ss_pred cccCCEEEEEecCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
.+.+++|+|+|+|.||+.+++.|...| .+|++++|+..+...... ..........++.+++.++|+
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~-------------~~g~~~i~~~~l~~~l~~aDv 243 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAK-------------ELGGEAVKFEDLEEYLAEADI 243 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-------------HcCCeEeeHHHHHHHHhhCCE
Confidence 488999999999999999999999999 689999997654210000 000001123467788999999
Q ss_pred EEEecCCCccccCcCCHHHHhhhC-C---CCcEEEEccCCCCcc
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSM-F---FATYVVFMFQGHGVS 268 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~m-k---~ga~lIN~~RG~~vd 268 (269)
|+.+.+ .+..+++++.++ .+ + ...++|+++...=||
T Consensus 244 Vi~aT~---s~~~ii~~e~l~-~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 244 VISSTG---APHPIVSKEDVE-RALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred EEECCC---CCCceEcHHHHH-HHHhcCCCCeEEEEeCCCCCCC
Confidence 999954 566889999888 54 2 245999998654443
No 90
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.36 E-value=3.7e-07 Score=83.51 Aligned_cols=110 Identities=14% Similarity=0.094 Sum_probs=73.7
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccc---ccchhhhccccccc-cccccCCCCCHHHHHhhCCEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC---QSSALAVKNGIIDD-LVDEKGCHEDIFEFASKADVV 229 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~~aDvv 229 (269)
++|+|||.|.||..+|..+...|++|+.||+++........ .........|.... .........+++++++.||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999987643111000 00000000110000 001111235788999999999
Q ss_pred EEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
+-++|.+.+.+.-+-++.-+ .++++++|-...-+
T Consensus 88 iEavpE~l~vK~~lf~~l~~-~~~~~aIlaSnTS~ 121 (321)
T PRK07066 88 QESAPEREALKLELHERISR-AAKPDAIIASSTSG 121 (321)
T ss_pred EECCcCCHHHHHHHHHHHHH-hCCCCeEEEECCCc
Confidence 99999998887766676667 89999977654333
No 91
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.35 E-value=1.9e-06 Score=77.22 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=65.8
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||.|. +|+.++.+|...|+.|+.+... ..++.+.+++|
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~------------------------------T~~l~~~~~~A 203 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF------------------------------TKNLRHHVRNA 203 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC------------------------------CCCHHHHHhhC
Confidence 3579999999999999 9999999999999999998642 14688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+|+++++-. +++.. + .+|+|+++|++|
T Consensus 204 DIvi~avG~p----~~v~~---~-~vk~gavVIDvG 231 (285)
T PRK10792 204 DLLVVAVGKP----GFIPG---E-WIKPGAIVIDVG 231 (285)
T ss_pred CEEEEcCCCc----ccccH---H-HcCCCcEEEEcc
Confidence 9999999522 46776 3 678999999999
No 92
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.34 E-value=4.5e-07 Score=75.33 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=69.1
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccc--------c------cccC
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL--------V------DEKG 214 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~------~~~~ 214 (269)
..+...+|.|+|.|.+|+..++.|+++|++|+.+|........ ... .+ ........ + ....
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~-~~~--~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQ-LES--LG--AYFIEVDYEDHLERKDFDKADYYEHPE 90 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHH-HHH--TT--TEESEETTTTTTTSB-CCHHHCHHHCC
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHh-hhc--cc--CceEEEcccccccccccchhhhhHHHH
Confidence 4577799999999999999999999999999999976542110 000 00 00000000 0 0001
Q ss_pred -CCCCHHHHHhhCCEEEEe-cCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 215 -CHEDIFEFASKADVVVCC-LSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 215 -~~~~l~ell~~aDvvv~~-lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
....|.+.++.+|+|+++ +-..+..-.+++++.++ .||+++++++++
T Consensus 91 ~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~-~m~~gsvIvDis 139 (168)
T PF01262_consen 91 SYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVK-SMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHH-TSSTTEEEEETT
T ss_pred HhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhh-ccCCCceEEEEE
Confidence 113588999999999864 43466677899999999 999999999986
No 93
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.33 E-value=4.8e-07 Score=82.30 Aligned_cols=106 Identities=18% Similarity=0.213 Sum_probs=67.8
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l 233 (269)
++|+|||.|.||..+|..|...|.+|.+|+|+...............+..+ ...........+.++.++++|+|++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~vi~~v 79 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPG--IKLPDNLRATTDLAEALADADLILVAV 79 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCC--CcCCCCeEEeCCHHHHHhCCCEEEEeC
Confidence 379999999999999999999999999999865431110000000000000 000000112357778899999999999
Q ss_pred CCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
|. ..+..++. +... .+++++++|++..|
T Consensus 80 ~~-~~~~~v~~-~l~~-~~~~~~~vi~~~ng 107 (325)
T PRK00094 80 PS-QALREVLK-QLKP-LLPPDAPIVWATKG 107 (325)
T ss_pred CH-HHHHHHHH-HHHh-hcCCCCEEEEEeec
Confidence 95 45555553 3445 67889999998755
No 94
>PLN00203 glutamyl-tRNA reductase
Probab=98.32 E-value=1.2e-06 Score=84.98 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=73.7
Q ss_pred cccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
++.+++|+|||.|.||+.+++.|...|+ +|++++|+..+....... ++ + ........+++.+++.++|+
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~-----~~-g----~~i~~~~~~dl~~al~~aDV 332 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREE-----FP-D----VEIIYKPLDEMLACAAEADV 332 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH-----hC-C----CceEeecHhhHHHHHhcCCE
Confidence 4889999999999999999999999997 799999987552111000 00 0 00001123567788999999
Q ss_pred EEEecCCCccccCcCCHHHHhhhCCC-------CcEEEEccCCCCc
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSMFF-------ATYVVFMFQGHGV 267 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~mk~-------ga~lIN~~RG~~v 267 (269)
|+++. +....++.++.++ .+++ .-+||+++=..=|
T Consensus 333 VIsAT---~s~~pvI~~e~l~-~~~~~~~~~~~~~~~IDLAvPRdI 374 (519)
T PLN00203 333 VFTST---SSETPLFLKEHVE-ALPPASDTVGGKRLFVDISVPRNV 374 (519)
T ss_pred EEEcc---CCCCCeeCHHHHH-HhhhcccccCCCeEEEEeCCCCCC
Confidence 99985 4667899999998 7643 2489998855433
No 95
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.30 E-value=1.1e-06 Score=83.20 Aligned_cols=93 Identities=15% Similarity=0.205 Sum_probs=62.1
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-----------
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF----------- 222 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----------- 222 (269)
++|+|||+|.||..+|..|...|.+|++||++..+... ...|+++. ....++++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~---------l~~g~~~~------~e~~l~~~l~~~~~~g~l~ 68 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT---------INRGEIHI------VEPDLDMVVKTAVEGGYLR 68 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH---------HHCCCCCc------CCCCHHHHHHHHhhcCcee
Confidence 68999999999999999999999999999987654211 11111100 01233333
Q ss_pred ----HhhCCEEEEecCCC------ccccCcCC--HHHHhhhCCCCcEEEEcc
Q 024297 223 ----ASKADVVVCCLSLN------KQTVKLCS--SSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 223 ----l~~aDvvv~~lp~t------~~t~~li~--~~~l~~~mk~ga~lIN~~ 262 (269)
+++||+|++|+|.. ++...+.. .+... .+++|+++|+.+
T Consensus 69 ~~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~-~l~~g~iVI~~S 119 (415)
T PRK11064 69 ATTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAP-VLKKGDLVILES 119 (415)
T ss_pred eecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHH-hCCCCCEEEEeC
Confidence 23799999999943 12223321 33455 799999998865
No 96
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.30 E-value=9.4e-07 Score=83.52 Aligned_cols=106 Identities=19% Similarity=0.331 Sum_probs=66.1
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccc---ccC---CCCCHHHHHhhCC
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD---EKG---CHEDIFEFASKAD 227 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~l~ell~~aD 227 (269)
++|+|||+|.||..+|..|...|++|++||++..+.........++ +..| .++... ..+ ...++.++++++|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~-~e~~-l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPI-YEPG-LDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCC-CCCC-HHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 3799999999999999999999999999998765421110000000 0000 000000 001 2257788899999
Q ss_pred EEEEecCCCccc------cCcCC--HHHHhhhCCCCcEEEEcc
Q 024297 228 VVVCCLSLNKQT------VKLCS--SSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 228 vvv~~lp~t~~t------~~li~--~~~l~~~mk~ga~lIN~~ 262 (269)
+|++++|..... +.+.. .+... .+++|.++|+.+
T Consensus 79 vvii~vpt~~~~~~~~d~~~v~~~~~~i~~-~l~~g~lvi~~S 120 (411)
T TIGR03026 79 VIIICVPTPLKEDGSPDLSYVESAAETIAK-HLRKGATVVLES 120 (411)
T ss_pred EEEEEeCCCCCCCCCcChHHHHHHHHHHHH-hcCCCCEEEEeC
Confidence 999999944321 11221 23445 789999999876
No 97
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.30 E-value=6.1e-07 Score=80.85 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=66.7
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccc---ccchhhhcccccccc-----ccccCCCCCHHHHHhh
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC---QSSALAVKNGIIDDL-----VDEKGCHEDIFEFASK 225 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~l~ell~~ 225 (269)
++|+|||.|.||..+|..+...|.+|++||++.+....... ......++.|.+... ........+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 68999999999999999999999999999987643211000 000000111111000 00011124564 4789
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEE-Ecc
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVV-FMF 262 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lI-N~~ 262 (269)
||+|+.++|..++.+..+-++... .++++++|+ |++
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~-~~~~~~ii~s~ts 120 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCP-VLKPEAILATNTS 120 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHh-hCCCCcEEEEcCC
Confidence 999999999766544433344556 889999998 554
No 98
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.30 E-value=9.4e-07 Score=78.89 Aligned_cols=91 Identities=26% Similarity=0.296 Sum_probs=68.8
Q ss_pred cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCE
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV 228 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDv 228 (269)
-|.||||+|||||+-|++-|..|+..|.+|++--|....+- ....+.+ ...+.+|+.++||+
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~-----------------~kA~~dGf~V~~v~ea~k~ADv 77 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSW-----------------KKAKEDGFKVYTVEEAAKRADV 77 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhH-----------------HHHHhcCCEeecHHHHhhcCCE
Confidence 58999999999999999999999999999888777654421 1111112 45789999999999
Q ss_pred EEEecCCCccccCcCCHHHHhhhCCCCcEEE
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVV 259 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lI 259 (269)
|.+.+|... ...++.++.-. .|+.|+.|.
T Consensus 78 im~L~PDe~-q~~vy~~~I~p-~Lk~G~aL~ 106 (338)
T COG0059 78 VMILLPDEQ-QKEVYEKEIAP-NLKEGAALG 106 (338)
T ss_pred EEEeCchhh-HHHHHHHHhhh-hhcCCceEE
Confidence 999999543 34455555555 899998653
No 99
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.29 E-value=3e-06 Score=76.24 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=65.4
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|+|.|. +|+.++..|...|++|+.+++.. .++.+.++++
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------------------------~~L~~~~~~a 203 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------------------------QNLPELVKQA 203 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------------------------hhHHHHhccC
Confidence 4679999999999998 99999999999999999998621 3577888999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
|+||++++ .+ ++++.+ .+|+|+++|+++-
T Consensus 204 DIvI~AtG-~~---~~v~~~----~lk~gavViDvg~ 232 (283)
T PRK14192 204 DIIVGAVG-KP---ELIKKD----WIKQGAVVVDAGF 232 (283)
T ss_pred CEEEEccC-CC---CcCCHH----HcCCCCEEEEEEE
Confidence 99999996 33 367763 5789999999873
No 100
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.28 E-value=1.6e-06 Score=74.00 Aligned_cols=92 Identities=22% Similarity=0.196 Sum_probs=63.4
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l 233 (269)
++++|+|.|+||..+|++|...|.+|++-++..++...... ......-...+.++..+.+|||++++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a-------------~~l~~~i~~~~~~dA~~~aDVVvLAV 68 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAA-------------AALGPLITGGSNEDAAALADVVVLAV 68 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHH-------------HhhccccccCChHHHHhcCCEEEEec
Confidence 58999999999999999999999999999766544221110 01111113457889999999999999
Q ss_pred CCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 234 SLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|... .... .++... .+. |.++|++.
T Consensus 69 P~~a-~~~v-~~~l~~-~~~-~KIvID~t 93 (211)
T COG2085 69 PFEA-IPDV-LAELRD-ALG-GKIVIDAT 93 (211)
T ss_pred cHHH-HHhH-HHHHHH-HhC-CeEEEecC
Confidence 9653 2222 233444 455 88888764
No 101
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.26 E-value=1e-06 Score=85.30 Aligned_cols=110 Identities=12% Similarity=0.008 Sum_probs=68.5
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccc----cchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ----SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv 229 (269)
++|||||.|.||..+|..|...|++|++||+++......... ...+....+.............++.+++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 589999999999999999999999999999976542110000 0000000000000000011236788999999999
Q ss_pred EEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
+.++|...+.+.-+-.+.-+ .++++++|....-|
T Consensus 85 ieavpe~~~vk~~l~~~l~~-~~~~~~iI~SsTsg 118 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDA-AARPDALIGSSTSG 118 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHh-hCCCCcEEEEcCCC
Confidence 99999776555433233434 67888877766554
No 102
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.26 E-value=6.1e-06 Score=73.97 Aligned_cols=78 Identities=22% Similarity=0.227 Sum_probs=65.9
Q ss_pred cccccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||+|.|||-| .+|+.+|.+|...|+.|+.+... ..++.+.+++|
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~------------------------------t~~l~~~~~~A 201 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL------------------------------TKDLSFYTQNA 201 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC------------------------------cHHHHHHHHhC
Confidence 467999999999999 99999999999999999998421 13578999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
|+|+++++ ..++++.++ .|+|+++|++|-
T Consensus 202 DIvV~AvG----~p~~i~~~~----vk~GavVIDvGi 230 (285)
T PRK14191 202 DIVCVGVG----KPDLIKASM----VKKGAVVVDIGI 230 (285)
T ss_pred CEEEEecC----CCCcCCHHH----cCCCcEEEEeec
Confidence 99999996 336788754 589999999984
No 103
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.25 E-value=1.4e-06 Score=77.97 Aligned_cols=88 Identities=19% Similarity=0.238 Sum_probs=58.6
Q ss_pred EEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297 155 TVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~ 232 (269)
+|+|||+|.||..+|+.|+..|. +|+++|++........ ..| ... ...+..++. ++|+|+++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~--------~~g----~~~---~~~~~~~~~-~aD~Vila 65 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL--------ELG----LVD---EIVSFEELK-KCDVIFLA 65 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH--------HCC----CCc---ccCCHHHHh-cCCEEEEe
Confidence 79999999999999999997775 8999998654311100 000 000 123566655 59999999
Q ss_pred cCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+|.. .+...+. .+. .+++++++++++
T Consensus 66 vp~~-~~~~~~~--~l~-~l~~~~iv~d~g 91 (275)
T PRK08507 66 IPVD-AIIEILP--KLL-DIKENTTIIDLG 91 (275)
T ss_pred CcHH-HHHHHHH--HHh-ccCCCCEEEECc
Confidence 9954 3344432 344 378899999874
No 104
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.23 E-value=5.6e-06 Score=74.26 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=65.3
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||.|. +|+.+|.+|...|+.|+.+... ..++.+..++|
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~------------------------------T~~l~~~~~~A 208 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF------------------------------TDDLKKYTLDA 208 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc------------------------------CCCHHHHHhhC
Confidence 4579999999999999 9999999999999999998731 14688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+|++++-- .++++.+ .+|+|+++|++|
T Consensus 209 DIvv~AvG~----p~~i~~~----~vk~gavVIDvG 236 (287)
T PRK14176 209 DILVVATGV----KHLIKAD----MVKEGAVIFDVG 236 (287)
T ss_pred CEEEEccCC----ccccCHH----HcCCCcEEEEec
Confidence 999998742 2577764 578999999998
No 105
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.23 E-value=4e-06 Score=74.93 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=66.6
Q ss_pred cccccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.|++|.|+|.+ .+|+.+|.+|..+|++|+.+..+ ..++.+.+++|
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~------------------------------t~~L~~~~~~A 196 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSK------------------------------TENLKAELRQA 196 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecC------------------------------hhHHHHHHhhC
Confidence 457999999999999 99999999999999999998642 14688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+|+.+++-. +++++++ +|+|+++|++|
T Consensus 197 DIvI~Avgk~----~lv~~~~----vk~GavVIDVg 224 (279)
T PRK14178 197 DILVSAAGKA----GFITPDM----VKPGATVIDVG 224 (279)
T ss_pred CEEEECCCcc----cccCHHH----cCCCcEEEEee
Confidence 9999999622 7888865 58999999998
No 106
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.21 E-value=3.1e-06 Score=79.35 Aligned_cols=104 Identities=23% Similarity=0.334 Sum_probs=77.1
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (269)
.+|.++++.|||+|.||+-+|+.|...|. +|++.+|+..+...-.. .........+++.+.+.++|
T Consensus 174 ~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~-------------~~~~~~~~l~el~~~l~~~D 240 (414)
T COG0373 174 GSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAK-------------KLGAEAVALEELLEALAEAD 240 (414)
T ss_pred cccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH-------------HhCCeeecHHHHHHhhhhCC
Confidence 45899999999999999999999999995 79999999876321111 11112224578889999999
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCC--cEEEEccCCCCcc
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFA--TYVVFMFQGHGVS 268 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~g--a~lIN~~RG~~vd 268 (269)
+|+++ |.....+++.+.+...++.. -++|++|=..-||
T Consensus 241 vViss---Tsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie 280 (414)
T COG0373 241 VVISS---TSAPHPIITREMVERALKIRKRLLIVDIAVPRDVE 280 (414)
T ss_pred EEEEe---cCCCccccCHHHHHHHHhcccCeEEEEecCCCCCC
Confidence 99999 55777899988877344432 4788887555444
No 107
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.21 E-value=1.3e-06 Score=78.83 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=68.5
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccccc------chhhhccccccc-----cccccCCCCCHHHH
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS------SALAVKNGIIDD-----LVDEKGCHEDIFEF 222 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~~~l~el 222 (269)
++|+|||.|.||..+|..+...|++|+.+|++...-....... .......|.+.. .........++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 5899999999999999999999999999998765421100000 000001111000 00001112345 56
Q ss_pred HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCc
Q 024297 223 ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGV 267 (269)
Q Consensus 223 l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~v 267 (269)
+++||+|+.++|...+.+.-+-++.-. .++++++|++..-|-.+
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~-~~~~~~il~S~tsg~~~ 126 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELER-NVSPETIIASNTSGIMI 126 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHh-hCCCCeEEEEcCCCCCH
Confidence 799999999999665433333233434 68899999988776543
No 108
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.20 E-value=1.8e-06 Score=81.89 Aligned_cols=102 Identities=21% Similarity=0.289 Sum_probs=72.5
Q ss_pred cccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
.+.+++|+|+|.|.||+.+++.|...|+ +|++++|+..+...... ..........++.+.+.++|+
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~-------------~~g~~~~~~~~~~~~l~~aDv 245 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAE-------------EFGGEAIPLDELPEALAEADI 245 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH-------------HcCCcEeeHHHHHHHhccCCE
Confidence 4789999999999999999999999998 89999997654210000 000011122456778899999
Q ss_pred EEEecCCCccccCcCCHHHHhhhC-----CCCcEEEEccCCCCcc
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSM-----FFATYVVFMFQGHGVS 268 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~m-----k~ga~lIN~~RG~~vd 268 (269)
|+.+.| ....+++.+.++ .+ ..+.++|+++-..=||
T Consensus 246 VI~aT~---s~~~~i~~~~l~-~~~~~~~~~~~vviDla~Prdid 286 (423)
T PRK00045 246 VISSTG---APHPIIGKGMVE-RALKARRHRPLLLVDLAVPRDIE 286 (423)
T ss_pred EEECCC---CCCcEEcHHHHH-HHHhhccCCCeEEEEeCCCCCCc
Confidence 999965 445788888887 43 3468999998654343
No 109
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.20 E-value=1.4e-06 Score=78.24 Aligned_cols=96 Identities=21% Similarity=0.264 Sum_probs=63.3
Q ss_pred CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~ 232 (269)
-++|+|+|+|.||+.+|+.++..|..|.++++........... . -...++. ......+.+.++|+|+++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~------~----lgv~d~~-~~~~~~~~~~~aD~Viva 71 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL------E----LGVIDEL-TVAGLAEAAAEADLVIVA 71 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh------h----cCccccc-ccchhhhhcccCCEEEEe
Confidence 4689999999999999999999999876666544331110000 0 0011110 012236778899999999
Q ss_pred cCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+|-. .|..++.+ ... .+|+|+++.+++
T Consensus 72 vPi~-~~~~~l~~-l~~-~l~~g~iv~Dv~ 98 (279)
T COG0287 72 VPIE-ATEEVLKE-LAP-HLKKGAIVTDVG 98 (279)
T ss_pred ccHH-HHHHHHHH-hcc-cCCCCCEEEecc
Confidence 9954 55555544 444 689999999986
No 110
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.19 E-value=1.3e-05 Score=64.74 Aligned_cols=80 Identities=21% Similarity=0.182 Sum_probs=66.4
Q ss_pred cccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||+|.|+|- ..+|+.++.+|...|++|+.++.+. .++++.+++|
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------------------------------~~l~~~v~~A 72 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------------------------------IQLQSKVHDA 72 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------------------------------cCHHHHHhhC
Confidence 56899999999995 5679999999999999999987421 3688899999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
|+|+++.+.. ++|+.+ .+|+|+++|+++...
T Consensus 73 DIVvsAtg~~----~~i~~~----~ikpGa~Vidvg~~~ 103 (140)
T cd05212 73 DVVVVGSPKP----EKVPTE----WIKPGATVINCSPTK 103 (140)
T ss_pred CEEEEecCCC----CccCHH----HcCCCCEEEEcCCCc
Confidence 9999998733 678874 578999999998654
No 111
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.17 E-value=1.7e-06 Score=78.54 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=64.1
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccc---cchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv 230 (269)
++|+|||.|.||..+|..|...|++|+++|++.......... ..+...+.+.............++.+++++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 589999999999999999999999999999865431110000 00000000000000000012356778899999999
Q ss_pred EecCCCccc-cCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 231 CCLSLNKQT-VKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 231 ~~lp~t~~t-~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
+++|...+. ..++ .+.-. .++++++++...-|
T Consensus 85 ~av~~~~~~~~~v~-~~l~~-~~~~~~ii~s~tsg 117 (311)
T PRK06130 85 EAVPEKLELKRDVF-ARLDG-LCDPDTIFATNTSG 117 (311)
T ss_pred EeccCcHHHHHHHH-HHHHH-hCCCCcEEEECCCC
Confidence 999965432 3343 22323 56777777644333
No 112
>PRK07680 late competence protein ComER; Validated
Probab=98.16 E-value=2.3e-06 Score=76.37 Aligned_cols=91 Identities=20% Similarity=0.275 Sum_probs=64.2
Q ss_pred EEEEEecCchHHHHHHHhccCC----CEEEEEcCCCCCccccccccchhhhcccccccccccc-C--CCCCHHHHHhhCC
Q 024297 155 TVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G--CHEDIFEFASKAD 227 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~ell~~aD 227 (269)
+|+|||+|+||+++++.|...| .+|.+++|+..+... ..... + ...+..+++.++|
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~-----------------~~~~~~g~~~~~~~~~~~~~aD 64 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYH-----------------IKERYPGIHVAKTIEEVISQSD 64 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHH-----------------HHHHcCCeEEECCHHHHHHhCC
Confidence 6999999999999999998877 379999987643111 00110 1 1356778899999
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
+|++++| ......++. +... .++++.++|.++-|-
T Consensus 65 iVilav~-p~~~~~vl~-~l~~-~l~~~~~iis~~ag~ 99 (273)
T PRK07680 65 LIFICVK-PLDIYPLLQ-KLAP-HLTDEHCLVSITSPI 99 (273)
T ss_pred EEEEecC-HHHHHHHHH-HHHh-hcCCCCEEEEECCCC
Confidence 9999997 334445442 2444 677888999987553
No 113
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.15 E-value=1.7e-06 Score=77.87 Aligned_cols=107 Identities=15% Similarity=0.078 Sum_probs=65.9
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccc---cchhhhccccccc------cccccCCCCCHHHHHh
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIIDD------LVDEKGCHEDIFEFAS 224 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------~~~~~~~~~~l~ell~ 224 (269)
++|+|||.|.||..+|..+...|.+|+.+|++...-...... ......+.+.... .........+++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 589999999999999999999999999999875431110000 0000011111000 0000012367888899
Q ss_pred hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297 225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM 261 (269)
Q Consensus 225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~ 261 (269)
.||+|+.++|...+.+.-+-++.-. .++++++|+..
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~-~~~~~~ii~sn 119 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAK-VAPEKTIFATN 119 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHh-hCCCCCEEEEC
Confidence 9999999999554443332233445 78889888543
No 114
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.15 E-value=2.5e-06 Score=77.77 Aligned_cols=102 Identities=20% Similarity=0.265 Sum_probs=67.2
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv 229 (269)
+.+++|+|+|.|.||+.+++.|+..| .+|++++|+..+...... .........+++.+.+.++|+|
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~-------------~~g~~~~~~~~~~~~l~~aDvV 242 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAK-------------ELGGNAVPLDELLELLNEADVV 242 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-------------HcCCeEEeHHHHHHHHhcCCEE
Confidence 68999999999999999999999876 579999997654211000 0000111224577888999999
Q ss_pred EEecCCCccccCcCCHHHHhhhC-CCCcEEEEccCCCCcc
Q 024297 230 VCCLSLNKQTVKLCSSSLSSKSM-FFATYVVFMFQGHGVS 268 (269)
Q Consensus 230 v~~lp~t~~t~~li~~~~l~~~m-k~ga~lIN~~RG~~vd 268 (269)
+.+.|.. .. ..+-+..++ .. +++.++|+++...-||
T Consensus 243 i~at~~~-~~-~~~~~~~~~-~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 243 ISATGAP-HY-AKIVERAMK-KRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred EECCCCC-ch-HHHHHHHHh-hCCCCCeEEEEeCCCCCCc
Confidence 9998843 33 111222333 22 3578999999755444
No 115
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.15 E-value=2.9e-06 Score=77.18 Aligned_cols=107 Identities=19% Similarity=0.199 Sum_probs=72.5
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l 233 (269)
++|+|||.|+.|.++|+.|...|.+|..|.|.++-.......+.+..|..|+ ..........++.++++.||+|++.+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i--~lp~~l~at~Dl~~a~~~ad~iv~av 79 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGI--LLPPNLKATTDLAEALDGADIIVIAV 79 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCc--cCCcccccccCHHHHHhcCCEEEEEC
Confidence 5899999999999999999999999999998543211111111222223332 12222224578999999999999999
Q ss_pred CCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297 234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
| +...+..+.. .-. .+++++.+|+++.|=
T Consensus 80 P-s~~~r~v~~~-l~~-~l~~~~~iv~~sKGi 108 (329)
T COG0240 80 P-SQALREVLRQ-LKP-LLLKDAIIVSATKGL 108 (329)
T ss_pred C-hHHHHHHHHH-Hhh-hccCCCeEEEEeccc
Confidence 9 3344444333 223 678999999998873
No 116
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.13 E-value=5.3e-07 Score=71.57 Aligned_cols=91 Identities=22% Similarity=0.215 Sum_probs=52.5
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCEEEEE-cCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCE
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV 228 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDv 228 (269)
...+|+|||.|++|..+++.|...|..|..+ +|+..... ....... ...++.+++.++|+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~-----------------~a~~~~~~~~~~~~~~~~~~aDl 71 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAE-----------------RAAAFIGAGAILDLEEILRDADL 71 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHH-----------------HHHC--TT-----TTGGGCC-SE
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccc-----------------ccccccccccccccccccccCCE
Confidence 4568999999999999999999999998776 45432211 1111111 33567788999999
Q ss_pred EEEecCCCccccCcCCHHHHhhh--CCCCcEEEEcc
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKS--MFFATYVVFMF 262 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~--mk~ga~lIN~~ 262 (269)
+++++|.. .-..+ -+ .+... .++|.+++-++
T Consensus 72 v~iavpDd-aI~~v-a~-~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 72 VFIAVPDD-AIAEV-AE-QLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp EEE-S-CC-HHHHH-HH-HHHCC--S-TT-EEEES-
T ss_pred EEEEechH-HHHHH-HH-HHHHhccCCCCcEEEECC
Confidence 99999954 22222 12 23313 57898888775
No 117
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.13 E-value=1.9e-05 Score=70.64 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=65.1
Q ss_pred cccccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||-| -+|+.+|.+|...|+.|+.+... ..++.+..++|
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~------------------------------T~~l~~~~~~A 201 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF------------------------------TKDLKAHTKKA 201 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CcCHHHHHhhC
Confidence 468999999999999 89999999999999999987521 14688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+|++++. ..++++.++ .|+|+++|++|
T Consensus 202 DIvV~AvG----kp~~i~~~~----vk~gavvIDvG 229 (281)
T PRK14183 202 DIVIVGVG----KPNLITEDM----VKEGAIVIDIG 229 (281)
T ss_pred CEEEEecC----cccccCHHH----cCCCcEEEEee
Confidence 99999986 236788754 67899999998
No 118
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=98.12 E-value=1.9e-05 Score=66.91 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=66.9
Q ss_pred ccccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCC----CCCHHH
Q 024297 147 TGETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC----HEDIFE 221 (269)
Q Consensus 147 ~~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~e 221 (269)
.+.++.||++.|||-+. +|+.+|.+|...|+.|+.++.+....... .+ ..-.+.-. ..++.+
T Consensus 56 ~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~----------~~---~~~hs~t~~~~~~~~l~~ 122 (197)
T cd01079 56 YGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTR----------GE---SIRHEKHHVTDEEAMTLD 122 (197)
T ss_pred cCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCccccccc----------cc---ccccccccccchhhHHHH
Confidence 46789999999999775 69999999999999999997533210000 00 00000000 113889
Q ss_pred HHhhCCEEEEecCCCccccCc-CCHHHHhhhCCCCcEEEEcc
Q 024297 222 FASKADVVVCCLSLNKQTVKL-CSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 222 ll~~aDvvv~~lp~t~~t~~l-i~~~~l~~~mk~ga~lIN~~ 262 (269)
.+++||+||++++- .++ +..+ ..|+|+++||+|
T Consensus 123 ~~~~ADIVIsAvG~----~~~~i~~d----~ik~GavVIDVG 156 (197)
T cd01079 123 CLSQSDVVITGVPS----PNYKVPTE----LLKDGAICINFA 156 (197)
T ss_pred HhhhCCEEEEccCC----CCCccCHH----HcCCCcEEEEcC
Confidence 99999999999983 356 7775 467999999998
No 119
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.10 E-value=3e-06 Score=76.39 Aligned_cols=109 Identities=13% Similarity=0.089 Sum_probs=70.8
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccc---ccchhhhccccccc-----cccccCCCCCHHHHHhh
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC---QSSALAVKNGIIDD-----LVDEKGCHEDIFEFASK 225 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~ 225 (269)
++|||||.|.||..+|..+...|++|+.||++++....... ...+.....|.... .........++ +.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999999999999998765221000 00000111121100 00011123566 55899
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhC-CCCcEEEEccCC
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSM-FFATYVVFMFQG 264 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~m-k~ga~lIN~~RG 264 (269)
||+|+-++|.+.+.+.-+-. .+++.+ +++++|++..-+
T Consensus 85 ~d~ViEav~E~~~~K~~l~~-~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFA-ELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred CCEEEEecccCHHHHHHHHH-HHHHhhCCCCcEEEECCCC
Confidence 99999999988887775555 455145 899999887654
No 120
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.10 E-value=1.9e-05 Score=58.13 Aligned_cols=67 Identities=27% Similarity=0.371 Sum_probs=54.6
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (269)
..+.+++++|+|.|.+|+.+++.+... +.+|.+++| |
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------------d 56 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------------D 56 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------------C
Confidence 568999999999999999999999988 567777641 9
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+++.+.+.. +++.++..+ .+++++++++++
T Consensus 57 i~i~~~~~~----~~~~~~~~~-~~~~~~~v~~~a 86 (86)
T cd05191 57 ILVTATPAG----VPVLEEATA-KINEGAVVIDLA 86 (86)
T ss_pred EEEEcCCCC----CCchHHHHH-hcCCCCEEEecC
Confidence 999997642 556665677 899999999864
No 121
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.09 E-value=2.6e-06 Score=73.50 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=78.4
Q ss_pred chHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHh--ccCCCEEEE-EcCCCCCcc
Q 024297 114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL--RPFGVKIIA-TKRSWASHS 190 (269)
Q Consensus 114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l--~~~G~~V~~-~~~~~~~~~ 190 (269)
.+.++|.+..++...|++.. |. ..++|+|+|+|.+|+.+++.+ ...|+++.+ +|+++.+..
T Consensus 61 ~~~~gy~v~~l~~~~~~~l~---------~~-------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~ 124 (213)
T PRK05472 61 KRGVGYNVEELLEFIEKILG---------LD-------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIG 124 (213)
T ss_pred CCCCCeeHHHHHHHHHHHhC---------CC-------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcC
Confidence 44567888888888888742 11 346899999999999999863 467998776 555432210
Q ss_pred ccccccchhhhccccccccccccCCCCCHHHHHhh--CCEEEEecCCCccc---cCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297 191 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQT---VKLCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDvvv~~lp~t~~t---~~li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
... .... .....++.+++++ .|++++++|.+... ..+....... -+...++.+|+.||.
T Consensus 125 ~~i--------------~g~~-v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~-il~~~p~~~~v~~~~ 188 (213)
T PRK05472 125 TKI--------------GGIP-VYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKG-ILNFAPVRLSVPEDV 188 (213)
T ss_pred CEe--------------CCeE-EcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCE-EeecCceeecCCCCC
Confidence 000 0000 1133568888875 99999999976541 2222222233 456667888999998
Q ss_pred Ccc
Q 024297 266 GVS 268 (269)
Q Consensus 266 ~vd 268 (269)
+|+
T Consensus 189 ~v~ 191 (213)
T PRK05472 189 IVR 191 (213)
T ss_pred EEE
Confidence 775
No 122
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.09 E-value=5e-06 Score=74.56 Aligned_cols=102 Identities=20% Similarity=0.149 Sum_probs=67.6
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhcccccccccccc--CCC-CCHHHHHh
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GCH-EDIFEFAS 224 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~l~ell~ 224 (269)
.++.++++.|+|.|.+|+++++.|...| .+|++++|+.++...... ..... ... .++.+.+.
T Consensus 119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~--------------~~~~~~~~~~~~~~~~~~~ 184 (278)
T PRK00258 119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAK--------------LFGALGKAELDLELQEELA 184 (278)
T ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH--------------Hhhhccceeecccchhccc
Confidence 4688999999999999999999999999 689999998654211100 00000 001 23456778
Q ss_pred hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297 225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
++|+||++.|.......-.+.-.+. .++++++++++.-.+
T Consensus 185 ~~DivInaTp~g~~~~~~~~~~~~~-~l~~~~~v~DivY~P 224 (278)
T PRK00258 185 DFDLIINATSAGMSGELPLPPLPLS-LLRPGTIVYDMIYGP 224 (278)
T ss_pred cCCEEEECCcCCCCCCCCCCCCCHH-HcCCCCEEEEeecCC
Confidence 9999999998664321111111235 678889998876443
No 123
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.08 E-value=4.2e-06 Score=84.63 Aligned_cols=93 Identities=27% Similarity=0.301 Sum_probs=65.2
Q ss_pred CEEEEEecCchHHHHHHHhccCC--CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~ 231 (269)
++|+|||+|.||.++++.++..| .+|+++|++..+..... ..| .. .....++.+++.++|+|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~--------~~g----~~--~~~~~~~~~~~~~aDvVil 69 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV--------SLG----VI--DRGEEDLAEAVSGADVIVL 69 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH--------HCC----CC--CcccCCHHHHhcCCCEEEE
Confidence 68999999999999999999888 58999998765421100 001 00 0123567888999999999
Q ss_pred ecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
++|.. .+..++. +... .++++.++++++.
T Consensus 70 avp~~-~~~~vl~-~l~~-~~~~~~ii~d~~s 98 (735)
T PRK14806 70 AVPVL-AMEKVLA-DLKP-LLSEHAIVTDVGS 98 (735)
T ss_pred CCCHH-HHHHHHH-HHHH-hcCCCcEEEEcCC
Confidence 99954 4444442 2334 6788999998875
No 124
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.07 E-value=5.6e-06 Score=78.64 Aligned_cols=97 Identities=15% Similarity=0.226 Sum_probs=64.0
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccc-------cccccccC--CCCCHHHHHh
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII-------DDLVDEKG--CHEDIFEFAS 224 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~l~ell~ 224 (269)
.+|||||+|.||..+|..|.. |++|++||++..+-... ..|.. ++.. ..+ ...+-.+.++
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l---------~~G~~~~~e~~~~~l~-~~g~l~~t~~~~~~~ 75 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILEL---------KNGVDVNLETTEEELR-EARYLKFTSEIEKIK 75 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHH---------HCcCCCCCCCCHHHHH-hhCCeeEEeCHHHHc
Confidence 689999999999999999877 79999999987652211 11110 0000 001 1122235689
Q ss_pred hCCEEEEecCCCc------cccCcCC--HHHHhhhCCCCcEEEEcc
Q 024297 225 KADVVVCCLSLNK------QTVKLCS--SSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 225 ~aDvvv~~lp~t~------~t~~li~--~~~l~~~mk~ga~lIN~~ 262 (269)
+||++++|+|... +...+.. +...+ .+++|.++|+.+
T Consensus 76 ~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~-~l~~g~lVI~~S 120 (425)
T PRK15182 76 ECNFYIITVPTPINTYKQPDLTPLIKASETVGT-VLNRGDIVVYES 120 (425)
T ss_pred CCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHH-hcCCCCEEEEec
Confidence 9999999999442 2244442 33456 899999999865
No 125
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.06 E-value=7.8e-06 Score=72.68 Aligned_cols=90 Identities=27% Similarity=0.283 Sum_probs=67.6
Q ss_pred CEEEEEecCchHHHHHHHhccCC----CEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCC
Q 024297 154 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD 227 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD 227 (269)
++|||||+|+||++++..|...| .+|++.+|+.++.. .....++ ...+..++..++|
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~-----------------~l~~~~g~~~~~~~~~~~~~ad 64 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA-----------------ALAAEYGVVTTTDNQEAVEEAD 64 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH-----------------HHHHHcCCcccCcHHHHHhhCC
Confidence 58999999999999999999888 58999998876531 1222332 2467789999999
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCC---CCcEEEEccCCCCc
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMF---FATYVVFMFQGHGV 267 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk---~ga~lIN~~RG~~v 267 (269)
+|++++.. + .=.+.++ .++ ++.++|.++-|-.+
T Consensus 65 vv~LavKP--q----~~~~vl~-~l~~~~~~~lvISiaAGv~~ 100 (266)
T COG0345 65 VVFLAVKP--Q----DLEEVLS-KLKPLTKDKLVISIAAGVSI 100 (266)
T ss_pred EEEEEeCh--H----hHHHHHH-HhhcccCCCEEEEEeCCCCH
Confidence 99999952 2 2245666 666 68899999877544
No 126
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.05 E-value=4.3e-06 Score=75.00 Aligned_cols=94 Identities=19% Similarity=0.215 Sum_probs=63.5
Q ss_pred CEEEEEecCchHHHHHHHhccCC----CEEEEEcCCCCCccccccccchhhhcccccccccccc-C--CCCCHHHHHhhC
Q 024297 154 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G--CHEDIFEFASKA 226 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~ell~~a 226 (269)
.+|+|||+|+||.++++.|...| .+|.+++++....... ..... . ...+..+++.++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~----------------l~~~~~~~~~~~~~~e~~~~a 65 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQ----------------LYDKYPTVELADNEAEIFTKC 65 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHH----------------HHHHcCCeEEeCCHHHHHhhC
Confidence 47999999999999999998777 6899998754221100 00111 0 125677889999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG 266 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~ 266 (269)
|+|++++| ......++. +... .++++..+|.+.=|--
T Consensus 66 DvVilavp-p~~~~~vl~-~l~~-~l~~~~~ivS~~aGi~ 102 (277)
T PRK06928 66 DHSFICVP-PLAVLPLLK-DCAP-VLTPDRHVVSIAAGVS 102 (277)
T ss_pred CEEEEecC-HHHHHHHHH-HHHh-hcCCCCEEEEECCCCC
Confidence 99999999 333444332 2333 5677888998877643
No 127
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.05 E-value=4e-06 Score=76.20 Aligned_cols=110 Identities=13% Similarity=0.030 Sum_probs=64.1
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccc---cchhhhcccccc-----ccccccCCCCCHHHHHhh
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIID-----DLVDEKGCHEDIFEFASK 225 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~l~ell~~ 225 (269)
++|+|||.|.||..+|..|...|++|++||++.......... ..+.....|.+. ..........++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 479999999999999999999999999999876431110000 000000011100 000000123578889999
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
||+|+.++|...+...-+-.+ +....++..++.....+
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~ssts~ 120 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAE-LDALAPPHAILASSTSA 120 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEEEeCCC
Confidence 999999999664433322222 34145566666544443
No 128
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.02 E-value=4.4e-05 Score=66.53 Aligned_cols=99 Identities=17% Similarity=0.223 Sum_probs=70.8
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCCE---EEEEcCCC----CCccccccccchhhhcccccccccccc---CCCC
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVK---IIATKRSW----ASHSQVSCQSSALAVKNGIIDDLVDEK---GCHE 217 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~---V~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 217 (269)
+..+.++++.|+|.|.+|+.+|+.|...|++ |+.+||+. .+......... ...... ....
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~----------~la~~~~~~~~~~ 89 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKN----------EIAKETNPEKTGG 89 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHH----------HHHHHhccCcccC
Confidence 4578999999999999999999999999984 99999984 22100000000 011111 0113
Q ss_pred CHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 218 DIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 218 ~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
++.+.++++|+||.+.| .++++.+.++ .|.++.++..++
T Consensus 90 ~l~~~l~~~dvlIgaT~-----~G~~~~~~l~-~m~~~~ivf~ls 128 (226)
T cd05311 90 TLKEALKGADVFIGVSR-----PGVVKKEMIK-KMAKDPIVFALA 128 (226)
T ss_pred CHHHHHhcCCEEEeCCC-----CCCCCHHHHH-hhCCCCEEEEeC
Confidence 67788899999999975 4788888999 999998887766
No 129
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.02 E-value=6.9e-06 Score=73.50 Aligned_cols=92 Identities=20% Similarity=0.194 Sum_probs=62.5
Q ss_pred cCCEEEEEecCchHHHHHHHhcc--CCCEEE-EEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHhh
Q 024297 152 LGKTVFILGFGNIGVELAKRLRP--FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK 225 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~--~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~ 225 (269)
...+|||||+|.||+.+++.+.. .+++|. ++++++.+.. .....++ .+.++++++.+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~-----------------~~a~~~g~~~~~~~~eell~~ 67 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHA-----------------DFIWGLRRPPPVVPLDQLATH 67 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHH-----------------HHHHhcCCCcccCCHHHHhcC
Confidence 34799999999999999999885 488876 5676543311 1111111 34689999999
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG 266 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~ 266 (269)
+|+|++|.|... + .+.....++.|.-+++.+.|.+
T Consensus 68 ~D~Vvi~tp~~~---h---~e~~~~aL~aGk~Vi~~s~gal 102 (271)
T PRK13302 68 ADIVVEAAPASV---L---RAIVEPVLAAGKKAIVLSVGAL 102 (271)
T ss_pred CCEEEECCCcHH---H---HHHHHHHHHcCCcEEEecchhH
Confidence 999999998432 1 2222226677777777777653
No 130
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.01 E-value=1.1e-05 Score=76.36 Aligned_cols=101 Identities=12% Similarity=0.233 Sum_probs=71.3
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccc-cccCCCCCHHHHHhhC
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKA 226 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~a 226 (269)
..+.|+++.|||.|.+|+.+++.|...|+ +|++++|+..+...-. .... ......+++.+++.++
T Consensus 177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La-------------~~~~~~~~~~~~~l~~~l~~a 243 (414)
T PRK13940 177 DNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKIT-------------SAFRNASAHYLSELPQLIKKA 243 (414)
T ss_pred cCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-------------HHhcCCeEecHHHHHHHhccC
Confidence 45889999999999999999999999996 7999999865421100 0000 0111335678889999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS 268 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd 268 (269)
|+|+++.+ ....+|+.+... .+.-++|+.|=..=||
T Consensus 244 DiVI~aT~---a~~~vi~~~~~~---~~~~~~iDLavPRdid 279 (414)
T PRK13940 244 DIIIAAVN---VLEYIVTCKYVG---DKPRVFIDISIPQALD 279 (414)
T ss_pred CEEEECcC---CCCeeECHHHhC---CCCeEEEEeCCCCCCC
Confidence 99999965 455788876654 2346888887554444
No 131
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.01 E-value=4.3e-06 Score=81.10 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=69.6
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccc---cccchhhhccccccc-----cccccCCCCCHHHHHhh
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSSALAVKNGIIDD-----LVDEKGCHEDIFEFASK 225 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~ 225 (269)
++|||||.|.||..+|+.+...|++|+.+|++.+...... ....+.....|.+.. .........++++ +.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 6899999999999999999999999999999876421100 000000011121000 0000112246655 569
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEE-EccC
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVV-FMFQ 263 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lI-N~~R 263 (269)
||+|+-++|.+.+.+..+-.+.-. .++++++|. |++-
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~-~~~~~ailasntSt 124 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEA-IVSPDCILATNTSS 124 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHh-hCCCCcEEEECCCC
Confidence 999999999888877765554334 678999994 8863
No 132
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.00 E-value=1.4e-05 Score=67.68 Aligned_cols=112 Identities=21% Similarity=0.140 Sum_probs=69.1
Q ss_pred cccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+..+.++++.|+|. |.+|+.+++.|...|.+|+.++|+..+... ... .+.-..+. .-........+++.+.++++
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~-l~~--~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ 98 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQK-AAD--SLRARFGE-GVGAVETSDDAARAAAIKGA 98 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH-HHH--HHHhhcCC-cEEEeeCCCHHHHHHHHhcC
Confidence 45688999999995 999999999999999999999987543111 000 00000000 00000011224556888999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS 268 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd 268 (269)
|+|+.+.|....+ .+. .-. ..+++.+++++.+.+-++
T Consensus 99 diVi~at~~g~~~--~~~--~~~-~~~~~~vv~D~~~~~~~~ 135 (194)
T cd01078 99 DVVFAAGAAGVEL--LEK--LAW-APKPLAVAADVNAVPPVG 135 (194)
T ss_pred CEEEECCCCCcee--chh--hhc-ccCceeEEEEccCCCCCC
Confidence 9999998855431 111 111 345688999988776543
No 133
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=97.98 E-value=6e-06 Score=79.99 Aligned_cols=107 Identities=15% Similarity=0.102 Sum_probs=68.7
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccc---cccchhhhcccccc-----ccccccCCCCCHHHHHhh
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSSALAVKNGIID-----DLVDEKGCHEDIFEFASK 225 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~l~ell~~ 225 (269)
++|||||.|.||..+|+.+...|++|+.||++...-.... ....+..+..|... ..........++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 6899999999999999999999999999999865421100 00000111122110 00001112356755 579
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEE-Ecc
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVV-FMF 262 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lI-N~~ 262 (269)
||+|+.++|...+.+.-+-.+.-. .++++++|. |++
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~-~~~~~~IlasnTS 121 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEE-LCPADTIIASNTS 121 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHh-hCCCCeEEEECCC
Confidence 999999999887776655454444 788888887 665
No 134
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.97 E-value=8.1e-06 Score=73.20 Aligned_cols=109 Identities=17% Similarity=0.108 Sum_probs=66.3
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccc---ccchhhhccccccc-----cccccCCCCCHHHHHhh
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC---QSSALAVKNGIIDD-----LVDEKGCHEDIFEFASK 225 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~ 225 (269)
++|+|||.|.||..+|..+...|.+|+++|+++........ .........|.+.. .........+++ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 58999999999999999999999999999987654210000 00000001110000 000011124554 4799
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
||+|+.++|.+.+.+.-+-++..+ .++++++++...-|
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~-~~~~~~il~s~ts~ 120 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDE-IAKPEAILATNTSS 120 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHh-hCCCCcEEEECCCC
Confidence 999999998766655333333545 78999998665444
No 135
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.97 E-value=3.6e-05 Score=68.48 Aligned_cols=77 Identities=23% Similarity=0.285 Sum_probs=65.4
Q ss_pred cccccCCEEEEEecCch-HHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.|+++.|||-|+| |+.++.+|...++.|+++... ..++.+..++|
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~------------------------------T~~l~~~~k~A 200 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSR------------------------------TKDLASITKNA 200 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCC------------------------------CCCHHHHhhhC
Confidence 46899999999998875 999999999999999998742 14788999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+|++++- -.+++..+ ..|+|+++|++|
T Consensus 201 DIvv~AvG----~p~~i~~d----~vk~gavVIDVG 228 (283)
T COG0190 201 DIVVVAVG----KPHFIKAD----MVKPGAVVIDVG 228 (283)
T ss_pred CEEEEecC----Cccccccc----cccCCCEEEecC
Confidence 99999985 33788864 578999999997
No 136
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.94 E-value=5.2e-05 Score=67.96 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=65.0
Q ss_pred cccccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||-+ -+|+.++.+|...|+.|+.+... ..++.+..++|
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~------------------------------T~~l~~~~~~A 203 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK------------------------------TQNLPSIVRQA 203 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence 468999999999965 57999999999999999998632 14688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+|++++. ..++++.+ ..|+|+++|++|
T Consensus 204 DIvIsAvG----k~~~i~~~----~ik~gavVIDvG 231 (284)
T PRK14177 204 DIIVGAVG----KPEFIKAD----WISEGAVLLDAG 231 (284)
T ss_pred CEEEEeCC----CcCccCHH----HcCCCCEEEEec
Confidence 99999987 23678875 467999999998
No 137
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.94 E-value=1.1e-05 Score=71.52 Aligned_cols=89 Identities=28% Similarity=0.319 Sum_probs=58.4
Q ss_pred CEEEEEecCchHHHHHHHhccCC---CEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCE
Q 024297 154 KTVFILGFGNIGVELAKRLRPFG---VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV 228 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDv 228 (269)
++|+|||+|.||+.+++.+...| .+|.+++|+..+... ....++ ...+..+++.++|+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~-----------------~~~~~g~~~~~~~~~~~~~adv 65 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAA-----------------LAEEYGVRAATDNQEAAQEADV 65 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHH-----------------HHHhcCCeecCChHHHHhcCCE
Confidence 57999999999999999999888 789999987643110 111111 23567788899999
Q ss_pred EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
|++++|.. ..+.++.. ... .+ +..+|++.=|
T Consensus 66 Vil~v~~~-~~~~v~~~-l~~-~~--~~~vvs~~~g 96 (267)
T PRK11880 66 VVLAVKPQ-VMEEVLSE-LKG-QL--DKLVVSIAAG 96 (267)
T ss_pred EEEEcCHH-HHHHHHHH-HHh-hc--CCEEEEecCC
Confidence 99999833 33333222 222 22 4567766544
No 138
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=97.94 E-value=1.2e-05 Score=72.80 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=62.4
Q ss_pred HHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEEecCCCccccCc
Q 024297 165 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTVKL 242 (269)
Q Consensus 165 G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~t~~t~~l 242 (269)
|+.+|++|...|++|++||++........ .+.+.+.+ ..++..++++++|+|++++|..++++.+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~-------------~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eV 98 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL-------------WKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSI 98 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhh-------------hHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHH
Confidence 78999999999999999998764311000 00111112 3357889999999999999988778888
Q ss_pred CCHHHHhhhCCCCcEEEEcc
Q 024297 243 CSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 243 i~~~~l~~~mk~ga~lIN~~ 262 (269)
+ ...+. .+++|+++||++
T Consensus 99 l-~GLaa-~L~~GaIVID~S 116 (341)
T TIGR01724 99 A-RTIIE-HVPENAVICNTC 116 (341)
T ss_pred H-HHHHh-cCCCCCEEEECC
Confidence 7 45788 899999999986
No 139
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.93 E-value=6.1e-06 Score=73.05 Aligned_cols=89 Identities=15% Similarity=0.146 Sum_probs=60.7
Q ss_pred EEEEEecCchHHHHHHHhccCCC---EEEEEcCCCCCccccccccchhhhcccccccccccc---CCCCCHHHHHhhCCE
Q 024297 155 TVFILGFGNIGVELAKRLRPFGV---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK---GCHEDIFEFASKADV 228 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~aDv 228 (269)
+|||||+|+||+.+++.|...|. .|.+++|+.++.. ...... ....+..+++.++|+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~-----------------~l~~~~~~~~~~~~~~~~~~~aDv 64 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAA-----------------RLAERFPKVRIAKDNQAVVDRSDV 64 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHH-----------------HHHHHcCCceEeCCHHHHHHhCCE
Confidence 79999999999999999987774 3578887654311 111111 123578888999999
Q ss_pred EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
|++++| ......++.. +. ++++.++|.+.=|-
T Consensus 65 Vilav~-p~~~~~vl~~--l~--~~~~~~vis~~ag~ 96 (258)
T PRK06476 65 VFLAVR-PQIAEEVLRA--LR--FRPGQTVISVIAAT 96 (258)
T ss_pred EEEEeC-HHHHHHHHHH--hc--cCCCCEEEEECCCC
Confidence 999998 3344444322 22 46788999887543
No 140
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.93 E-value=1.7e-05 Score=72.11 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=65.6
Q ss_pred ccCCEEEEEecCchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHhh
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK 225 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~ 225 (269)
...++++|+|.|.+|+..++.+.. ++. +|.+|+|+..+...-.. .....+ ...+.++++.+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~--------------~~~~~~~~~~~~~~~~av~~ 188 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCA--------------HARALGPTAEPLDGEAIPEA 188 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH--------------HHHhcCCeeEECCHHHHhhc
Confidence 356799999999999999998864 665 79999998655211110 000000 13578899999
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+|+|+++.| .+..++.. .+|||+.++++|
T Consensus 189 aDiVitaT~---s~~Pl~~~-----~~~~g~hi~~iG 217 (304)
T PRK07340 189 VDLVVTATT---SRTPVYPE-----AARAGRLVVAVG 217 (304)
T ss_pred CCEEEEccC---CCCceeCc-----cCCCCCEEEecC
Confidence 999999976 44578765 468999999988
No 141
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=6.1e-05 Score=67.52 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=64.7
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||-+. +|+.+|.+|...|+.|+.+... ..++.+..++|
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~------------------------------T~~l~~~~~~A 200 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK------------------------------TRNLKQLTKEA 200 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC------------------------------CCCHHHHHhhC
Confidence 4679999999999765 6999999999999999998531 14688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+||++++- .++++.+ ..|+|+++|++|
T Consensus 201 DIvI~AvG~----p~~i~~~----~vk~GavVIDvG 228 (282)
T PRK14169 201 DILVVAVGV----PHFIGAD----AVKPGAVVIDVG 228 (282)
T ss_pred CEEEEccCC----cCccCHH----HcCCCcEEEEee
Confidence 999999973 3678885 467899999998
No 142
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=7.8e-05 Score=67.15 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=64.7
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||-+. +|+.++.+|...|+.|+.+... ..++.+.+++|
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~------------------------------T~~l~~~~~~A 204 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA------------------------------TRDLADYCSKA 204 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence 4679999999999665 7999999999999999998631 14688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+||+++.- .++++.++ .|+|+++|++|
T Consensus 205 DIvVsAvGk----p~~i~~~~----ik~gaiVIDVG 232 (294)
T PRK14187 205 DILVAAVGI----PNFVKYSW----IKKGAIVIDVG 232 (294)
T ss_pred CEEEEccCC----cCccCHHH----cCCCCEEEEec
Confidence 999999973 36788754 67899999997
No 143
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.92 E-value=4.6e-05 Score=70.01 Aligned_cols=96 Identities=14% Similarity=0.081 Sum_probs=67.6
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (269)
.++.+++|.|||.|.||+.+|+.|...|+ +|++++|+.... .. .. ...+..+++.++|
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~------------------~~-~~--~~~~~~~~~~~~D 228 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL------------------PY-RT--VVREELSFQDPYD 228 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc------------------ch-hh--hhhhhhhcccCCC
Confidence 46899999999999999999999999996 699999986431 00 00 0001125567999
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCc
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGV 267 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~v 267 (269)
||+++...|......++.+.++ ..++ -+||+.+=..=|
T Consensus 229 vVIs~t~~Tas~~p~i~~~~~~-~~~~-r~~iDLAvPRdI 266 (338)
T PRK00676 229 VIFFGSSESAYAFPHLSWESLA-DIPD-RIVFDFNVPRTF 266 (338)
T ss_pred EEEEcCCcCCCCCceeeHHHHh-hccC-cEEEEecCCCCC
Confidence 9999744344555788888887 5443 388888744433
No 144
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.92 E-value=3.4e-05 Score=71.03 Aligned_cols=97 Identities=23% Similarity=0.208 Sum_probs=70.2
Q ss_pred cccccCCEEEEEec-CchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhcccccccccccc--CCCCCHHHH
Q 024297 148 GETLLGKTVFILGF-GNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GCHEDIFEF 222 (269)
Q Consensus 148 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~el 222 (269)
+.++.+++|.|+|. |.||+.+++.|.. .|. +|+.++|+..+. .. ...+. ....++++.
T Consensus 150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl-~~----------------La~el~~~~i~~l~~~ 212 (340)
T PRK14982 150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERL-QE----------------LQAELGGGKILSLEEA 212 (340)
T ss_pred ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHH-HH----------------HHHHhccccHHhHHHH
Confidence 45799999999998 8999999999974 564 899999875431 11 11111 123468899
Q ss_pred HhhCCEEEEecCCCccccC-cCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297 223 ASKADVVVCCLSLNKQTVK-LCSSSLSSKSMFFATYVVFMFQGHGVS 268 (269)
Q Consensus 223 l~~aDvvv~~lp~t~~t~~-li~~~~l~~~mk~ga~lIN~~RG~~vd 268 (269)
+.++|+|+.+.. .... +++.+ .++++.++|++|+..=||
T Consensus 213 l~~aDiVv~~ts---~~~~~~I~~~----~l~~~~~viDiAvPRDVd 252 (340)
T PRK14982 213 LPEADIVVWVAS---MPKGVEIDPE----TLKKPCLMIDGGYPKNLD 252 (340)
T ss_pred HccCCEEEECCc---CCcCCcCCHH----HhCCCeEEEEecCCCCCC
Confidence 999998887753 3335 37774 467899999999876554
No 145
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.91 E-value=6.4e-05 Score=67.24 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=64.7
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||-+. +|+.++.+|...|+.|+.+... ..++.+..++|
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~------------------------------T~~l~~~~~~A 202 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK------------------------------TKNLKEVCKKA 202 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence 3579999999999765 7999999999999999998631 14688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+|++++.- .++++.++ .|+|+++|++|
T Consensus 203 DIvIsAvGk----p~~i~~~~----ik~gavVIDvG 230 (278)
T PRK14172 203 DILVVAIGR----PKFIDEEY----VKEGAIVIDVG 230 (278)
T ss_pred CEEEEcCCC----cCccCHHH----cCCCcEEEEee
Confidence 999999973 36888854 67999999996
No 146
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.91 E-value=6.3e-05 Score=67.88 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=64.8
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||-+. +|+.++.+|...|+.|+.+... ..++++..++|
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~------------------------------T~~l~~~~~~A 202 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR------------------------------TQDLASITREA 202 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence 4689999999999765 7999999999999999998531 14688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+||++++- .++++.+ ..|+|+++|++|
T Consensus 203 DIvIsAvGk----p~~i~~~----~ik~gavVIDvG 230 (297)
T PRK14186 203 DILVAAAGR----PNLIGAE----MVKPGAVVVDVG 230 (297)
T ss_pred CEEEEccCC----cCccCHH----HcCCCCEEEEec
Confidence 999999972 2688874 467999999998
No 147
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.91 E-value=6.6e-05 Score=67.45 Aligned_cols=79 Identities=23% Similarity=0.236 Sum_probs=65.4
Q ss_pred cccccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||-+ .+|+.++.+|...|+.|+.+... ..++.+..++|
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~------------------------------T~~l~~~~~~A 199 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK------------------------------TQDLPAVTRRA 199 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence 467999999999965 57999999999999999988631 14688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
|+||+++.- .++++.+ ..|+|+++|++|--
T Consensus 200 DIvIsAvGk----p~~i~~~----~vk~GavVIDVGin 229 (287)
T PRK14173 200 DVLVVAVGR----PHLITPE----MVRPGAVVVDVGIN 229 (287)
T ss_pred CEEEEecCC----cCccCHH----HcCCCCEEEEccCc
Confidence 999999962 3788874 46799999999843
No 148
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.91 E-value=6.8e-05 Score=67.23 Aligned_cols=78 Identities=21% Similarity=0.289 Sum_probs=65.2
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||-+. +|+.+|.+|...|+.|+.+... ..++.+.+++|
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~------------------------------T~~l~~~~~~A 201 (284)
T PRK14170 152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR------------------------------TKDLPQVAKEA 201 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence 5689999999999765 6999999999999999998531 14688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
|+|++++.- .++++.+ ..|+|+++|++|-
T Consensus 202 DIvI~AvG~----~~~i~~~----~vk~GavVIDvGi 230 (284)
T PRK14170 202 DILVVATGL----AKFVKKD----YIKPGAIVIDVGM 230 (284)
T ss_pred CEEEEecCC----cCccCHH----HcCCCCEEEEccC
Confidence 999999973 3678875 4678999999983
No 149
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=5.9e-05 Score=67.68 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=66.1
Q ss_pred cccccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||-+ -+|+.+|.+|...|+.|+.+... ..++.+.+++|
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~------------------------------t~~l~~~~~~A 202 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK------------------------------TKNLAELTKQA 202 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC------------------------------chhHHHHHHhC
Confidence 457999999999965 57999999999999999998521 14688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
|+|+.++. ..++++.++ +|+|+++|++|.-.
T Consensus 203 DIvI~AvG----~p~~i~~~~----ik~gavVIDvGi~~ 233 (284)
T PRK14190 203 DILIVAVG----KPKLITADM----VKEGAVVIDVGVNR 233 (284)
T ss_pred CEEEEecC----CCCcCCHHH----cCCCCEEEEeeccc
Confidence 99999986 236888855 57999999998554
No 150
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=9.3e-05 Score=66.49 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=64.8
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||-+. +|+.++.+|...|+.|+.+... ..+|.+..++|
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~------------------------------T~~L~~~~~~A 203 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK------------------------------THNLSSITSKA 203 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence 4579999999999765 6999999999999999988631 14688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+||+++.- .++++.+ ..|+|+++|++|
T Consensus 204 DIvV~AvGk----p~~i~~~----~vk~GavVIDvG 231 (288)
T PRK14171 204 DIVVAAIGS----PLKLTAE----YFNPESIVIDVG 231 (288)
T ss_pred CEEEEccCC----CCccCHH----HcCCCCEEEEee
Confidence 999999872 3688875 467999999998
No 151
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=7.4e-05 Score=66.98 Aligned_cols=77 Identities=23% Similarity=0.271 Sum_probs=65.0
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||-+. +|+.+|.+|...|+.|+.+... ..++.+..++|
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~------------------------------T~nl~~~~~~A 201 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK------------------------------TKDLSLYTRQA 201 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence 4679999999999765 7999999999999999998631 14688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+|++++.- .++++.+ ..|+|+++|++|
T Consensus 202 DIvIsAvGk----p~~i~~~----~vk~GavVIDvG 229 (282)
T PRK14166 202 DLIIVAAGC----VNLLRSD----MVKEGVIVVDVG 229 (282)
T ss_pred CEEEEcCCC----cCccCHH----HcCCCCEEEEec
Confidence 999999972 3688885 467999999998
No 152
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.89 E-value=1e-05 Score=74.78 Aligned_cols=106 Identities=18% Similarity=0.184 Sum_probs=66.0
Q ss_pred EEEEEecCchHHHHHHHhccCC--------CEEEEEcCCCCCccccccc-----cchhhhccccccccccccCCCCCHHH
Q 024297 155 TVFILGFGNIGVELAKRLRPFG--------VKIIATKRSWASHSQVSCQ-----SSALAVKNGIIDDLVDEKGCHEDIFE 221 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G--------~~V~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~e 221 (269)
+|+|||.|+.|.++|..|...| .+|..|.|........... +.+..+..|. .+.....-..++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi--~Lp~~i~at~dl~e 78 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGI--KLPANLVAVPDLVE 78 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCC--cCCCCeEEECCHHH
Confidence 5899999999999999998767 9999998732100000000 0000011110 00000011258999
Q ss_pred HHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297 222 FASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 222 ll~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
+++.||+|++++| +...+.++.+ .-. .++++..+|+++.|=
T Consensus 79 al~~ADiIIlAVP-s~~i~~vl~~-l~~-~l~~~~~iVs~tKGi 119 (342)
T TIGR03376 79 AAKGADILVFVIP-HQFLEGICKQ-LKG-HVKPNARAISCIKGL 119 (342)
T ss_pred HHhcCCEEEEECC-hHHHHHHHHH-HHh-hcCCCCEEEEEeCCc
Confidence 9999999999999 3344444332 334 688899999999884
No 153
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.88 E-value=1.4e-05 Score=69.21 Aligned_cols=102 Identities=25% Similarity=0.266 Sum_probs=61.0
Q ss_pred CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297 154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (269)
Q Consensus 154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~ 232 (269)
++|+||| .|+||..+++.|...|.+|++++|+.++.......... ..... .........+..+.++++|+|+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~-~~~~~----g~~~~~~~~~~~ea~~~aDvVila 75 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALE-ELGHG----GSDIKVTGADNAEAAKRADVVILA 75 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHh-hcccc----CCCceEEEeChHHHHhcCCEEEEE
Confidence 3799997 89999999999999999999999876442110000000 00000 000000113557889999999999
Q ss_pred cCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
+|.. ....++ + .+...++ +.++|++.=|
T Consensus 76 vp~~-~~~~~l-~-~l~~~l~-~~vvI~~~ng 103 (219)
T TIGR01915 76 VPWD-HVLKTL-E-SLRDELS-GKLVISPVVP 103 (219)
T ss_pred CCHH-HHHHHH-H-HHHHhcc-CCEEEEeccC
Confidence 9944 333333 1 2321344 5889988655
No 154
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=7.5e-05 Score=66.94 Aligned_cols=77 Identities=16% Similarity=0.216 Sum_probs=64.8
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||-+. +|+.++.+|...|+.|+.+... ..++.+..++|
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~------------------------------T~dl~~~~k~A 202 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF------------------------------TTDLKSHTTKA 202 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC------------------------------CCCHHHHhhhc
Confidence 4679999999999765 7999999999999999998632 14688899999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+|+++++- .++++.+ ..|+|+++|++|
T Consensus 203 DIvIsAvGk----p~~i~~~----~vk~gavVIDvG 230 (282)
T PRK14180 203 DILIVAVGK----PNFITAD----MVKEGAVVIDVG 230 (282)
T ss_pred CEEEEccCC----cCcCCHH----HcCCCcEEEEec
Confidence 999999973 3678874 467999999998
No 155
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=0.00012 Score=65.76 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=63.9
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccC----CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 222 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 222 (269)
+.++.||++.|||-+. +|+.+|.+|... ++.|+.+... ..++.+.
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~------------------------------T~~l~~~ 197 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ------------------------------SENLTEI 197 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC------------------------------CCCHHHH
Confidence 4679999999999765 699999999987 7899987531 1468899
Q ss_pred HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 223 ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 223 l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+++||+|++++.- .+++..++ .|+|+++|++|
T Consensus 198 ~~~ADIvV~AvG~----p~~i~~~~----ik~GavVIDvG 229 (287)
T PRK14181 198 LKTADIIIAAIGV----PLFIKEEM----IAEKAVIVDVG 229 (287)
T ss_pred HhhCCEEEEccCC----cCccCHHH----cCCCCEEEEec
Confidence 9999999999972 26888854 67999999998
No 156
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=0.00012 Score=65.66 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=64.6
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||-+. +|+.++.+|...|+.|+.+... ..++.+..++|
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~------------------------------T~nl~~~~~~A 201 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR------------------------------TADLAGEVGRA 201 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence 4579999999999665 7999999999999999998631 14688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+|++++.- .++++.++ .|+|+++|++|
T Consensus 202 DIvI~AvGk----~~~i~~~~----ik~gaiVIDvG 229 (282)
T PRK14182 202 DILVAAIGK----AELVKGAW----VKEGAVVIDVG 229 (282)
T ss_pred CEEEEecCC----cCccCHHH----cCCCCEEEEee
Confidence 999999972 47888854 67899999998
No 157
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.84 E-value=3.4e-05 Score=70.84 Aligned_cols=102 Identities=15% Similarity=0.148 Sum_probs=63.3
Q ss_pred EEEEecCchHHHHHHHhcc-CCCEEEEEcCCCCCccccccccchhhhccccc--cccccccC--CCCCHHHHHhhCCEEE
Q 024297 156 VFILGFGNIGVELAKRLRP-FGVKIIATKRSWASHSQVSCQSSALAVKNGII--DDLVDEKG--CHEDIFEFASKADVVV 230 (269)
Q Consensus 156 vgIiG~G~iG~~~a~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~l~ell~~aDvvv 230 (269)
|||+|||.||+.+++.+.. -+++|.+++.............-.|-..++.. .......+ ...++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6899999999999998774 47898887753221100000000000000000 00000000 1246889999999999
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFM 261 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~ 261 (269)
.| |+.+.+..+++.+. +|+++++|+-.
T Consensus 81 e~---Tp~~~~~~na~~~~-~~GakaVl~~~ 107 (333)
T TIGR01546 81 DA---TPGGIGAKNKPLYE-KAGVKAIFQGG 107 (333)
T ss_pred EC---CCCCCChhhHHHHH-hCCcCEEEECC
Confidence 88 45778899999999 99999998853
No 158
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.84 E-value=0.00011 Score=65.90 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=64.6
Q ss_pred cccccCCEEEEEecC-chHHHHHHHhcc--CCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh
Q 024297 148 GETLLGKTVFILGFG-NIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 224 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~--~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 224 (269)
+.++.||++.|||-+ .+|+.++.+|.. .|+.|+.+... ..++.+.++
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~------------------------------T~~l~~~~k 202 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG------------------------------TRDLAAHTR 202 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC------------------------------CCCHHHHHH
Confidence 467999999999965 579999999987 79999998631 146889999
Q ss_pred hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
+||+|++++.- .++++.+ ..|+|+++|++|-
T Consensus 203 ~ADIvV~AvGk----p~~i~~~----~ik~GavVIDvGi 233 (284)
T PRK14193 203 RADIIVAAAGV----AHLVTAD----MVKPGAAVLDVGV 233 (284)
T ss_pred hCCEEEEecCC----cCccCHH----HcCCCCEEEEccc
Confidence 99999999873 2688875 4679999999984
No 159
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.83 E-value=1e-05 Score=68.38 Aligned_cols=105 Identities=23% Similarity=0.333 Sum_probs=57.7
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccccc---C---CCCCHHHHHhhCC
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK---G---CHEDIFEFASKAD 227 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~l~ell~~aD 227 (269)
++|+|+|+|-+|..+|..|...|++|+++|.+...-........++. -.| .++...+. + ...+..+.++++|
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~-E~~-l~~ll~~~~~~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIY-EPG-LDELLKENVSAGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS--CTT-HHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhcccccc-ccc-hhhhhccccccccchhhhhhhhhhhccc
Confidence 58999999999999999999999999999987653211100000000 000 01111111 1 2357888899999
Q ss_pred EEEEecCCCcccc-CcCC--------HHHHhhhCCCCcEEEEcc
Q 024297 228 VVVCCLSLNKQTV-KLCS--------SSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 228 vvv~~lp~t~~t~-~li~--------~~~l~~~mk~ga~lIN~~ 262 (269)
++++|+| ||... +-.| +...+ .++++.++|+-+
T Consensus 79 v~~I~Vp-TP~~~~~~~Dls~v~~a~~~i~~-~l~~~~lvV~~S 120 (185)
T PF03721_consen 79 VVFICVP-TPSDEDGSPDLSYVESAIESIAP-VLRPGDLVVIES 120 (185)
T ss_dssp EEEE-----EBETTTSBETHHHHHHHHHHHH-HHCSCEEEEESS
T ss_pred eEEEecC-CCccccCCccHHHHHHHHHHHHH-HHhhcceEEEcc
Confidence 9999999 55432 2222 12334 788899888754
No 160
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.83 E-value=3.4e-05 Score=69.64 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=71.7
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~ 231 (269)
.|+.+||+|+|.+|+...+.+++||++|++++++..+.+... ++-+.+...+...+.+.++++....|.++-
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~--------~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~ 252 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAI--------KSLGADVFVDSTEDPDIMKAIMKTTDGGID 252 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHH--------HhcCcceeEEecCCHHHHHHHHHhhcCcce
Confidence 899999999999999999999999999999998864432221 212222233333244567788888898888
Q ss_pred ecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
+++.- ..+-++. .++ .||++..+|-+|=
T Consensus 253 ~v~~~--a~~~~~~-~~~-~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 253 TVSNL--AEHALEP-LLG-LLKVNGTLVLVGL 280 (360)
T ss_pred eeeec--cccchHH-HHH-HhhcCCEEEEEeC
Confidence 87733 3344444 778 8999988887763
No 161
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.82 E-value=9.8e-05 Score=67.70 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=64.6
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||-+. +|+.+|.+|...|+.|+.+... ..++.+..++|
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~------------------------------T~nl~~~~~~A 258 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF------------------------------TKDPEQITRKA 258 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCC------------------------------CCCHHHHHhhC
Confidence 4679999999999765 6999999999999999998631 13688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+||+++.- .++++.++ .|+|+++|++|
T Consensus 259 DIvIsAvGk----p~~v~~d~----vk~GavVIDVG 286 (345)
T PLN02897 259 DIVIAAAGI----PNLVRGSW----LKPGAVVIDVG 286 (345)
T ss_pred CEEEEccCC----cCccCHHH----cCCCCEEEEcc
Confidence 999999873 36888854 67999999998
No 162
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.82 E-value=2e-05 Score=71.48 Aligned_cols=89 Identities=26% Similarity=0.304 Sum_probs=61.8
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHh-hCCE
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS-KADV 228 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~-~aDv 228 (269)
.-.+|||||||++|+-+|+.+...|..|+.++|+.-. +....++ .++.+.++.+ ..|+
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdys-------------------saa~~yg~~~ft~lhdlcerhpDv 111 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYS-------------------SAAEKYGSAKFTLLHDLCERHPDV 111 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhH-------------------HHHHHhcccccccHHHHHhcCCCE
Confidence 3458999999999999999999999999999986522 2223333 3567778777 7899
Q ss_pred EEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM 261 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~ 261 (269)
|++|+... .+..++-.==++ ++|.|++|+.+
T Consensus 112 vLlctsil-siekilatypfq-rlrrgtlfvdv 142 (480)
T KOG2380|consen 112 VLLCTSIL-SIEKILATYPFQ-RLRRGTLFVDV 142 (480)
T ss_pred EEEEehhh-hHHHHHHhcCch-hhccceeEeee
Confidence 99996522 222332222245 57777777764
No 163
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.81 E-value=0.0001 Score=67.95 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=64.8
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||-+. +|+.+|.+|...|+.|+.+... ..++.+..++|
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~------------------------------T~nl~~~~r~A 275 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR------------------------------TKNPEEITREA 275 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC------------------------------CCCHHHHHhhC
Confidence 4679999999999665 7999999999999999998531 14688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+||.++. ..++++.++ .|+|+++|++|
T Consensus 276 DIVIsAvG----kp~~i~~d~----vK~GAvVIDVG 303 (364)
T PLN02616 276 DIIISAVG----QPNMVRGSW----IKPGAVVIDVG 303 (364)
T ss_pred CEEEEcCC----CcCcCCHHH----cCCCCEEEecc
Confidence 99999996 236888854 67999999998
No 164
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.81 E-value=0.00011 Score=66.34 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=65.0
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+.++.||++.|||-+. +|+.++.+|...|+.|+.+... ..++++..++|
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~------------------------------T~nl~~~~~~A 211 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR------------------------------TPDPESIVREA 211 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence 4689999999999765 6999999999999999998631 13688999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+|++++.- .+++..+ ..|+|+++|++|
T Consensus 212 DIvv~AvGk----~~~i~~~----~vk~gavVIDvG 239 (299)
T PLN02516 212 DIVIAAAGQ----AMMIKGD----WIKPGAAVIDVG 239 (299)
T ss_pred CEEEEcCCC----cCccCHH----HcCCCCEEEEee
Confidence 999999863 3788875 467999999998
No 165
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.77 E-value=3.6e-05 Score=67.31 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=59.1
Q ss_pred cCCEEEEEecCchHHHHHHHhccCC---CE-EEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhh
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFG---VK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK 225 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G---~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~ 225 (269)
...+|+|||.|++|+++++.+...| .+ |++++++....... .....+ ...++++++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQ----------------LQARYNVSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHH----------------HHHHcCcEEeCChHHHHhc
Confidence 3578999999999999999887665 33 77787642221111 111111 23578889999
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
+|+|++++|.. ..+.++. .+...++ +.++|++.-|-
T Consensus 67 ~DiViiavp~~-~~~~v~~--~l~~~~~-~~~vis~~~gi 102 (245)
T PRK07634 67 VDTIVLAMPPS-AHEELLA--ELSPLLS-NQLVVTVAAGI 102 (245)
T ss_pred CCEEEEecCHH-HHHHHHH--HHHhhcc-CCEEEEECCCC
Confidence 99999999843 3233321 1220233 67888887664
No 166
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.76 E-value=0.0002 Score=64.37 Aligned_cols=77 Identities=19% Similarity=0.255 Sum_probs=64.3
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhcc----CCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 222 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~----~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 222 (269)
+.++.||++.|||-+. +|+.++.+|.. .|++|+.+... ..++.+.
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~------------------------------t~~l~~~ 201 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSR------------------------------TPDLAEE 201 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCC------------------------------chhHHHH
Confidence 4679999999999765 69999999998 78999987631 1468899
Q ss_pred HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 223 ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 223 l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+++||+||.++. ..+++.+++ .|+|+++|++|
T Consensus 202 ~~~ADIVI~AvG----~p~li~~~~----vk~GavVIDVG 233 (286)
T PRK14184 202 CREADFLFVAIG----RPRFVTADM----VKPGAVVVDVG 233 (286)
T ss_pred HHhCCEEEEecC----CCCcCCHHH----cCCCCEEEEee
Confidence 999999999995 347888855 58999999998
No 167
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.76 E-value=4.7e-05 Score=69.82 Aligned_cols=96 Identities=17% Similarity=0.191 Sum_probs=65.9
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~ 231 (269)
.|++|+|+|+|.+|....|.++++|++|++++++.++.....+. | .+...... ..+.++.+-+.+|+++.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l--------G-Ad~~i~~~-~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL--------G-ADHVINSS-DSDALEAVKEIADAIID 235 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh--------C-CcEEEEcC-CchhhHHhHhhCcEEEE
Confidence 48899999999999999999999999999999988763221110 0 01111111 12334444445999999
Q ss_pred ecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
++| .. .++. .++ .++++..++-+|=.
T Consensus 236 tv~-~~----~~~~-~l~-~l~~~G~~v~vG~~ 261 (339)
T COG1064 236 TVG-PA----TLEP-SLK-ALRRGGTLVLVGLP 261 (339)
T ss_pred CCC-hh----hHHH-HHH-HHhcCCEEEEECCC
Confidence 998 32 2333 677 89999988888754
No 168
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.75 E-value=5e-05 Score=68.32 Aligned_cols=102 Identities=23% Similarity=0.233 Sum_probs=61.3
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l 233 (269)
.+|+|||.|.||..+|..|...|.+|+.++|+.+.... ... ..+.+.+|. .........+..++ +.+|+|++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~-~~~-~g~~~~~~~---~~~~~~~~~~~~~~-~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDA-LNE-NGLRLEDGE---ITVPVLAADDPAEL-GPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHH-HHH-cCCcccCCc---eeecccCCCChhHc-CCCCEEEEec
Confidence 37999999999999999999999999999985433111 100 011110110 00000122445555 8999999999
Q ss_pred CCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
|.. ++..++.. ... .+.+++.+|...-|
T Consensus 75 k~~-~~~~~~~~-l~~-~l~~~~~iv~~~nG 102 (304)
T PRK06522 75 KAY-QLPAALPS-LAP-LLGPDTPVLFLQNG 102 (304)
T ss_pred ccc-cHHHHHHH-Hhh-hcCCCCEEEEecCC
Confidence 843 44443322 333 56667777766554
No 169
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.75 E-value=6e-05 Score=69.20 Aligned_cols=89 Identities=12% Similarity=0.047 Sum_probs=63.6
Q ss_pred CCEEEEEecCchHHHHHHHhcc-C-CCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhC
Q 024297 153 GKTVFILGFGNIGVELAKRLRP-F-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA 226 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~-~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a 226 (269)
-+++||||.|.+|+..++.+.. + .-+|.+|+|+.++...-. +...+.+ ...+.++++++|
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~--------------~~~~~~g~~v~~~~~~~eav~~a 193 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFA--------------LRASDYEVPVRAATDPREAVEGC 193 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHH--------------HHHHhhCCcEEEeCCHHHHhccC
Confidence 4789999999999997776653 3 458999999876531110 0001111 246889999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+|+++.| .+..++..+ .+|||+.+.++|
T Consensus 194 DiVitaT~---s~~P~~~~~----~l~~g~~v~~vG 222 (325)
T TIGR02371 194 DILVTTTP---SRKPVVKAD----WVSEGTHINAIG 222 (325)
T ss_pred CEEEEecC---CCCcEecHH----HcCCCCEEEecC
Confidence 99999976 445777663 578999999997
No 170
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.73 E-value=5.8e-05 Score=67.02 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=57.5
Q ss_pred CCEEEEEecCchHHHHHHHhccCC----CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297 153 GKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
..+|+|||+|+||.++++.+...| -+|++++++.... .. . ...+..+++.++|+
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------------------~~-~---~~~~~~~~~~~~D~ 60 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------------------PF-V---YLQSNEELAKTCDI 60 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------------------Ce-E---EeCChHHHHHhCCE
Confidence 468999999999999999998765 2599998765331 00 0 12456677889999
Q ss_pred EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
|++++| ..++..++.. ... .+++ ..+|.+.=|
T Consensus 61 Vilavk-p~~~~~vl~~-i~~-~l~~-~~iIS~~aG 92 (260)
T PTZ00431 61 IVLAVK-PDLAGKVLLE-IKP-YLGS-KLLISICGG 92 (260)
T ss_pred EEEEeC-HHHHHHHHHH-HHh-hccC-CEEEEEeCC
Confidence 999988 4455555443 323 3444 455665544
No 171
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.72 E-value=0.0002 Score=64.62 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=63.1
Q ss_pred cccccCCEEEEEecC-chHHHHHHHhccC----CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH
Q 024297 148 GETLLGKTVFILGFG-NIGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 222 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 222 (269)
+.++.||+|.|||-+ .+|+.+|.+|... ++.|+.+... ..++.+.
T Consensus 156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~------------------------------T~~l~~~ 205 (297)
T PRK14168 156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR------------------------------SKNLARH 205 (297)
T ss_pred CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC------------------------------CcCHHHH
Confidence 568999999999965 5799999999976 7899987521 1468899
Q ss_pred HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 223 ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 223 l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
.++||+||+++. ..++++.+ ..|+|+++|++|
T Consensus 206 ~~~ADIvVsAvG----kp~~i~~~----~ik~gavVIDvG 237 (297)
T PRK14168 206 CQRADILIVAAG----VPNLVKPE----WIKPGATVIDVG 237 (297)
T ss_pred HhhCCEEEEecC----CcCccCHH----HcCCCCEEEecC
Confidence 999999999985 23678875 467999999998
No 172
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.71 E-value=2.9e-05 Score=67.44 Aligned_cols=94 Identities=13% Similarity=0.143 Sum_probs=66.1
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l 233 (269)
+++|.||+|+||..++++|+.-|.+|++||+++.......+ .......+.+++-..|+..-+|-+.+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~-------------~ga~~a~sl~el~~~L~~pr~vWlMv 67 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD-------------EGATGAASLDELVAKLSAPRIVWLMV 67 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh-------------cCCccccCHHHHHHhcCCCcEEEEEc
Confidence 47899999999999999999999999999998754211110 11111112233444456779999999
Q ss_pred CCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 234 SLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|...-|...++. .-. .|.+|-++|+-+
T Consensus 68 Pag~it~~vi~~-la~-~L~~GDivIDGG 94 (300)
T COG1023 68 PAGDITDAVIDD-LAP-LLSAGDIVIDGG 94 (300)
T ss_pred cCCCchHHHHHH-HHh-hcCCCCEEEECC
Confidence 988667666654 555 788898888754
No 173
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.71 E-value=5.5e-05 Score=70.42 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=66.4
Q ss_pred CCEEEEEecCchHHHHHHHhccCC-------CEEEEEcCCCCCc-----cccccccchhhhccccccccccccCCCCCHH
Q 024297 153 GKTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWASH-----SQVSCQSSALAVKNGIIDDLVDEKGCHEDIF 220 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~~G-------~~V~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 220 (269)
..+|+|||.|++|.++|..|...| .+|..|.|+..-. ......+.+..|..|. .+........++.
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~--~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGI--KLPDNIVAVSDLK 88 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCC--cCCCceEEecCHH
Confidence 358999999999999999998665 7999998775310 0000000111111221 1111111236788
Q ss_pred HHHhhCCEEEEecCCCccccCcCCHHHHhh--hCCCCcEEEEccCCCC
Q 024297 221 EFASKADVVVCCLSLNKQTVKLCSSSLSSK--SMFFATYVVFMFQGHG 266 (269)
Q Consensus 221 ell~~aDvvv~~lp~t~~t~~li~~~~l~~--~mk~ga~lIN~~RG~~ 266 (269)
++++.+|+|++++| +...+.++. .++. .+++++.+|+++-|=.
T Consensus 89 eav~~aDiIvlAVP-sq~l~~vl~--~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 89 EAVEDADLLIFVIP-HQFLESVLS--QIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred HHHhcCCEEEEEcC-hHHHHHHHH--HhccccccCCCCEEEEEeCCcc
Confidence 99999999999999 333444332 2221 2455779999988843
No 174
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=97.71 E-value=0.00061 Score=61.99 Aligned_cols=132 Identities=16% Similarity=0.122 Sum_probs=90.0
Q ss_pred HhcCCcEEEecCC-CCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHHH
Q 024297 95 ATRCGIKVARIPG-DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELAK 170 (269)
Q Consensus 95 ~~~~gI~v~n~~~-~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a~ 170 (269)
+...+|+|.|... . ...++ .+|+-++.+.+.+ ..+.|++|+++|= +++.+.++.
T Consensus 119 a~~~~vPVINa~~g~---~~HPt--Q~LaDl~Ti~e~~-----------------G~l~g~kv~~vGD~~~~~v~~Sl~~ 176 (305)
T PRK00856 119 AESSDVPVINAGDGS---HQHPT--QALLDLLTIREEF-----------------GRLEGLKVAIVGDIKHSRVARSNIQ 176 (305)
T ss_pred HHHCCCCEEECCCCC---CCCcH--HHHHHHHHHHHHh-----------------CCCCCCEEEEECCCCCCcHHHHHHH
Confidence 3446799999864 2 33555 5555556555432 2488999999996 699999999
Q ss_pred HhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCcc------------
Q 024297 171 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ------------ 238 (269)
Q Consensus 171 ~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~------------ 238 (269)
.+..||++|.++.+..-.. +. ........+++++++++|||....=-.+.
T Consensus 177 ~~~~~g~~~~~~~P~~~~~-----------------~~-~~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~~~~~~~ 238 (305)
T PRK00856 177 ALTRLGAEVRLIAPPTLLP-----------------EG-MPEYGVHTDLDEVIEDADVVMMLRVQKERMDGGLLPSYEEY 238 (305)
T ss_pred HHHHcCCEEEEECCcccCc-----------------cc-ccceEEECCHHHHhCCCCEEEECCcccccccccchHHHHHH
Confidence 9999999999998643221 00 11112347899999999999885410000
Q ss_pred -ccCcCCHHHHhhhCCCCcEEEEcc---CCCCc
Q 024297 239 -TVKLCSSSLSSKSMFFATYVVFMF---QGHGV 267 (269)
Q Consensus 239 -t~~li~~~~l~~~mk~ga~lIN~~---RG~~v 267 (269)
....++++.++ ..|++++|.-+. ||.=|
T Consensus 239 ~~~y~v~~~ll~-~a~~~~~~mHcLPa~Rg~Ev 270 (305)
T PRK00856 239 KRSYGLTAERLA-LAKPDAIVMHPGPVNRGVEI 270 (305)
T ss_pred hccCccCHHHHh-hcCCCCEEECCCCCCCCCcc
Confidence 14567999999 899999887654 55433
No 175
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.71 E-value=0.00023 Score=64.15 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=63.2
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccC----CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 222 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 222 (269)
+.++.||++.|||-+. +|+.++.+|... ++.|+.+... ..++.+.
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------------------------------T~nl~~~ 201 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR------------------------------SKNLKKE 201 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC------------------------------CCCHHHH
Confidence 3579999999999765 699999999876 7899988521 1468899
Q ss_pred HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 223 ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 223 l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
.++||+|++++.- .++++.+ ..|+|+++|++|
T Consensus 202 ~~~ADIvIsAvGk----p~~i~~~----~vk~gavVIDvG 233 (293)
T PRK14185 202 CLEADIIIAALGQ----PEFVKAD----MVKEGAVVIDVG 233 (293)
T ss_pred HhhCCEEEEccCC----cCccCHH----HcCCCCEEEEec
Confidence 9999999999973 3678874 577999999998
No 176
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=97.71 E-value=3.5e-05 Score=72.43 Aligned_cols=104 Identities=14% Similarity=0.107 Sum_probs=61.0
Q ss_pred EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccc-ccC---CCCCHHHHHhhCCEEE
Q 024297 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKG---CHEDIFEFASKADVVV 230 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~l~ell~~aDvvv 230 (269)
+|+|||+|.||..+|..+. .|++|++||++..+-.......++. +-.+. ++... ... ...+..+++++||+|+
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~-~e~~l-~~~l~~~~~~l~~t~~~~~~~~~ad~vi 78 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPI-VDKEI-QQFLQSDKIHFNATLDKNEAYRDADYVI 78 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCC-CCcCH-HHHHHhCCCcEEEecchhhhhcCCCEEE
Confidence 7999999999999997766 5999999999776522111100000 00000 00000 111 1134667789999999
Q ss_pred EecCCCccc-cCcCCH-------HHHhhhCCCCcEEEEcc
Q 024297 231 CCLSLNKQT-VKLCSS-------SLSSKSMFFATYVVFMF 262 (269)
Q Consensus 231 ~~lp~t~~t-~~li~~-------~~l~~~mk~ga~lIN~~ 262 (269)
+++|...+- .+.++- +.+. .+++|.++|+.+
T Consensus 79 i~Vpt~~~~k~~~~dl~~v~~v~~~i~-~~~~g~lVV~~S 117 (388)
T PRK15057 79 IATPTDYDPKTNYFNTSSVESVIKDVV-EINPYAVMVIKS 117 (388)
T ss_pred EeCCCCCccCCCCcChHHHHHHHHHHH-hcCCCCEEEEee
Confidence 999944111 122221 2334 468899998765
No 177
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.70 E-value=4e-05 Score=70.33 Aligned_cols=104 Identities=20% Similarity=0.220 Sum_probs=62.4
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhh--cccccccc-ccccCCCCCHHHHHhhCCEEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV--KNGIIDDL-VDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~l~ell~~aDvvv 230 (269)
++|+|||.|.||..+|..|...|.+|++++|+... ..... ....+ .++..... ........+. +.+..+|+|+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~--~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi 78 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIG--DELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVL 78 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHH--HHHHh-cCceeecCCCcceecccceeEeccCh-hhccCCCEEE
Confidence 47999999999999999999999999999985321 10000 00000 00000000 0000012334 5678999999
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
+++|. ++....+ ++... .+++++++|.+.=|
T Consensus 79 l~vk~-~~~~~~~-~~l~~-~~~~~~iii~~~nG 109 (341)
T PRK08229 79 VTVKS-AATADAA-AALAG-HARPGAVVVSFQNG 109 (341)
T ss_pred EEecC-cchHHHH-HHHHh-hCCCCCEEEEeCCC
Confidence 99984 4555554 23445 67888888876433
No 178
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.69 E-value=8.5e-05 Score=67.83 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=61.3
Q ss_pred cCCEEEEEecCchHHHHHHHhcc-CC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297 152 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~-~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv 229 (269)
..++|+|||.|.+|+..++.+.. ++ .+|.+|+|++++...-... +. ..| .......+.++++.+||+|
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~---~~-~~g------~~~~~~~~~~~av~~aDIV 193 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAE---LR-AQG------FDAEVVTDLEAAVRQADII 193 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH---HH-hcC------CceEEeCCHHHHHhcCCEE
Confidence 46799999999999999985553 55 5899999987652111100 00 000 0011236788999999999
Q ss_pred EEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+++.|. ...++.. + .+++|+.+.-++
T Consensus 194 i~aT~s---~~pvl~~---~-~l~~g~~i~~ig 219 (314)
T PRK06141 194 SCATLS---TEPLVRG---E-WLKPGTHLDLVG 219 (314)
T ss_pred EEeeCC---CCCEecH---H-HcCCCCEEEeeC
Confidence 888663 3567766 3 678899655454
No 179
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.68 E-value=4.4e-06 Score=70.25 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=62.7
Q ss_pred EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccccc---chhhhcccccc-----ccccccCCCCCHHHHHhhC
Q 024297 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS---SALAVKNGIID-----DLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~l~ell~~a 226 (269)
+|+|||.|.||+.+|..+...|++|..||++........... ....+..|... ..........+++++. .|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999999999998765421111000 00001111110 0011111246788877 99
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
|+|+=++|-+.+.+.-+-++.-+ .++++++|.....+
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~-~~~~~~ilasnTSs 116 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDE-ICPPDTILASNTSS 116 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHC-CS-TTSEEEE--SS
T ss_pred heehhhccccHHHHHHHHHHHHH-HhCCCceEEecCCC
Confidence 99999999766655544443444 78899888765543
No 180
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.68 E-value=0.00021 Score=64.51 Aligned_cols=77 Identities=14% Similarity=0.264 Sum_probs=63.1
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhcc----CCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 222 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~----~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 222 (269)
+.++.||++.|||-+. +|+.++.+|.. .|++|+.+..+ ..++.+.
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~------------------------------t~~l~~~ 203 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSA------------------------------TKDIPSY 203 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCC------------------------------chhHHHH
Confidence 3679999999999765 69999999886 58888887632 1368899
Q ss_pred HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 223 ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 223 l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+++||+||.+++-. ++|++++ +|+|+++|++|
T Consensus 204 ~~~ADIvI~Avg~~----~li~~~~----vk~GavVIDVg 235 (295)
T PRK14174 204 TRQADILIAAIGKA----RFITADM----VKPGAVVIDVG 235 (295)
T ss_pred HHhCCEEEEecCcc----CccCHHH----cCCCCEEEEee
Confidence 99999999999522 7888865 58999999998
No 181
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.68 E-value=4.2e-05 Score=68.17 Aligned_cols=92 Identities=24% Similarity=0.278 Sum_probs=58.9
Q ss_pred CEEEEEecCchHHHHHHHhccC--CCE-EEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCE
Q 024297 154 KTVFILGFGNIGVELAKRLRPF--GVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV 228 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~--G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDv 228 (269)
.+|||||+|.||+.+++.+... +++ +.++|++..+.. ......+ .+.++++++.++|+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~-----------------~~a~~~~~~~~~~~~ell~~~Dv 64 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAE-----------------NLASKTGAKACLSIDELVEDVDL 64 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHH-----------------HHHHhcCCeeECCHHHHhcCCCE
Confidence 4799999999999999988865 577 446777653311 1111111 34688999999999
Q ss_pred EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS 268 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd 268 (269)
|+.+.|... . .+.....++.|.-++.++-|.+.|
T Consensus 65 Vvi~a~~~~--~----~~~~~~al~~Gk~Vvv~s~gAl~d 98 (265)
T PRK13304 65 VVECASVNA--V----EEVVPKSLENGKDVIIMSVGALAD 98 (265)
T ss_pred EEEcCChHH--H----HHHHHHHHHcCCCEEEEchHHhcC
Confidence 999987321 1 222222566666666666665544
No 182
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.66 E-value=0.00029 Score=63.65 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=63.1
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccC----CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 222 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 222 (269)
+.++.||++.|||-+. +|+.+|.+|... ++.|+.+... ..++.+.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------------------------------T~~l~~~ 201 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR------------------------------TDDLAAK 201 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC------------------------------CCCHHHH
Confidence 4579999999999765 799999999866 8999997521 1468899
Q ss_pred HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 223 ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 223 l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
.++||+|++++- ..++++.+ ..|+|+++|++|
T Consensus 202 ~~~ADIvIsAvG----kp~~i~~~----~ik~gaiVIDvG 233 (297)
T PRK14167 202 TRRADIVVAAAG----VPELIDGS----MLSEGATVIDVG 233 (297)
T ss_pred HhhCCEEEEccC----CcCccCHH----HcCCCCEEEEcc
Confidence 999999999985 23688884 467999999998
No 183
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.66 E-value=0.00013 Score=62.48 Aligned_cols=108 Identities=23% Similarity=0.242 Sum_probs=70.2
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhc-ccc----------------cc-cc
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVK-NGI----------------ID-DL 209 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~----------------~~-~~ 209 (269)
..|..++|+|+|.|.+|..+|+.|...|. +|+.+|+..-.......+ . |... -|. .. ..
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq-~-~~~~~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQ-Q-YKASQVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccc-c-CChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 56899999999999999999999999999 699999762110000000 0 0000 000 00 00
Q ss_pred ccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEE
Q 024297 210 VDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVF 260 (269)
Q Consensus 210 ~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN 260 (269)
.....+.+++.++++++|+|+.+ ..+++++..+..+... .++...++..
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~-~~~~~~ii~~ 143 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLE-KYKDKYLIAA 143 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHH-HcCCCcEEEE
Confidence 00111224567789999999999 5688899988887777 7777666653
No 184
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.66 E-value=5.9e-05 Score=70.44 Aligned_cols=97 Identities=13% Similarity=0.183 Sum_probs=65.8
Q ss_pred CEEEEEecCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297 154 KTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~ 232 (269)
++|.|||.|.||+.+|+.|...| .+|++.||+..+........ .+.+....-+....+.+.+++++.|+|+++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~------~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI------GGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc------cccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 58999999999999999999998 89999999876532221100 000111111222456789999999999999
Q ss_pred cCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+|.. ++...++-.++.|.-.++++
T Consensus 76 ~p~~------~~~~i~ka~i~~gv~yvDts 99 (389)
T COG1748 76 APPF------VDLTILKACIKTGVDYVDTS 99 (389)
T ss_pred CCch------hhHHHHHHHHHhCCCEEEcc
Confidence 9943 33444432667777777665
No 185
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.63 E-value=0.00011 Score=66.20 Aligned_cols=103 Identities=16% Similarity=0.082 Sum_probs=65.8
Q ss_pred cccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
.+.+++|.|+|.|.+|++++..|...|+ +|+++||+..+....... +.-... . .......++.+.++++|+
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~---l~~~~~---~--~~~~~~~~~~~~~~~aDi 195 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADE---LNARFP---A--ARATAGSDLAAALAAADG 195 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH---HHhhCC---C--eEEEeccchHhhhCCCCE
Confidence 4678999999999999999999999998 799999986552111100 000000 0 000112456667889999
Q ss_pred EEEecCCCccc--cCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 229 VVCCLSLNKQT--VKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 229 vv~~lp~t~~t--~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
||++.|.-... ...++. . .++++.+++++.-.
T Consensus 196 VInaTp~Gm~~~~~~~~~~---~-~l~~~~~v~DivY~ 229 (284)
T PRK12549 196 LVHATPTGMAKHPGLPLPA---E-LLRPGLWVADIVYF 229 (284)
T ss_pred EEECCcCCCCCCCCCCCCH---H-HcCCCcEEEEeeeC
Confidence 99998864221 112333 3 57778888877543
No 186
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.63 E-value=3.8e-05 Score=70.91 Aligned_cols=106 Identities=22% Similarity=0.168 Sum_probs=63.8
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l 233 (269)
.+|+|||.|.+|..+|..|...| +|..|.++...............+..+.. ..........++.+.++.+|+|++++
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~-~l~~~i~~t~d~~~a~~~aDlVilav 85 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDV-VLSDTLRATTDFAEAANCADVVVMGV 85 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCc-ccCCCeEEECCHHHHHhcCCEEEEEe
Confidence 57999999999999999999888 67777665432100000000000000000 00000112357888899999999999
Q ss_pred CCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
| +..++..+.. .-. .+++++.+|++.-|
T Consensus 86 p-s~~~~~vl~~-i~~-~l~~~~~vIsl~kG 113 (341)
T PRK12439 86 P-SHGFRGVLTE-LAK-ELRPWVPVVSLVKG 113 (341)
T ss_pred C-HHHHHHHHHH-HHh-hcCCCCEEEEEEeC
Confidence 9 4345554433 334 67888888888766
No 187
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.59 E-value=0.00031 Score=62.17 Aligned_cols=103 Identities=20% Similarity=0.161 Sum_probs=64.0
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccc------------------ccc
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII------------------DDL 209 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~ 209 (269)
+.++.|+||.|-|||++|+.+|+.|..+|++|+++..+... ...++|+. ...
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~----------i~~~~Gld~~~l~~l~~~~~~~~~~v~~~ 102 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGY----------VYDPDGFTGEKLAELKEIKEVRRGRVSEY 102 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCce----------EECCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 46799999999999999999999999999999965432111 00111110 000
Q ss_pred cccc--CCCCCHHHHH-hhCCEEEEecCCCccccCcCCHHHHhhhCC--CCcEEEEccCCCC
Q 024297 210 VDEK--GCHEDIFEFA-SKADVVVCCLSLNKQTVKLCSSSLSSKSMF--FATYVVFMFQGHG 266 (269)
Q Consensus 210 ~~~~--~~~~~l~ell-~~aDvvv~~lp~t~~t~~li~~~~l~~~mk--~ga~lIN~~RG~~ 266 (269)
...+ ....+-++++ .+|||++-| .+.+.|+.+... .++ +-.+++--+=|++
T Consensus 103 ~~~~~~a~~~~~~~~~~~~~DIliPc-----Al~~~I~~~na~-~i~~~~ak~I~EgAN~p~ 158 (254)
T cd05313 103 AKKYGTAKYFEGKKPWEVPCDIAFPC-----ATQNEVDAEDAK-LLVKNGCKYVAEGANMPC 158 (254)
T ss_pred hhcCCCCEEeCCcchhcCCCcEEEec-----cccccCCHHHHH-HHHHcCCEEEEeCCCCCC
Confidence 0000 0111222333 389999888 467899999888 774 3345655555554
No 188
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.57 E-value=0.00015 Score=66.58 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=63.8
Q ss_pred cCCEEEEEecCchHHHHHHHhc-cCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297 152 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv 229 (269)
..++++|||.|.+|+..++.+. ..+. +|.+++|+..+...-... +....+ .......+++++++++|+|
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~---~~~~~~------~~~~~~~~~~~~~~~aDiV 196 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQE---IQSKFN------TEIYVVNSADEAIEEADII 196 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHH---HHHhcC------CcEEEeCCHHHHHhcCCEE
Confidence 4679999999999999887765 4576 699999987652111000 000000 0001246789999999999
Q ss_pred EEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
+++.|.+ ..++. + .+|+|+.++.+|-
T Consensus 197 i~aT~s~---~p~i~----~-~l~~G~hV~~iGs 222 (325)
T PRK08618 197 VTVTNAK---TPVFS----E-KLKKGVHINAVGS 222 (325)
T ss_pred EEccCCC---CcchH----H-hcCCCcEEEecCC
Confidence 9997743 46664 3 6789999988863
No 189
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.56 E-value=8.4e-05 Score=67.00 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=61.4
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l 233 (269)
.+|+|+|.|.+|..+|..|...|.+|+.++| .... ..... ..+.+.... ...........+.++....+|+|++++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~-~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRA-KALRE-RGLVIRSDH-GDAVVPGPVITDPEELTGPFDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHH-HHHHh-CCeEEEeCC-CeEEecceeecCHHHccCCCCEEEEEe
Confidence 3799999999999999999999999999998 3221 11100 001110000 000000001245666678999999999
Q ss_pred CCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
|. .++...+ ++... .++++.++|++.=|
T Consensus 77 k~-~~~~~~~-~~l~~-~~~~~~~ii~~~nG 104 (305)
T PRK12921 77 KA-YQLDAAI-PDLKP-LVGEDTVIIPLQNG 104 (305)
T ss_pred cc-cCHHHHH-HHHHh-hcCCCCEEEEeeCC
Confidence 94 3444443 22333 56778888766433
No 190
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.55 E-value=0.00018 Score=66.12 Aligned_cols=95 Identities=17% Similarity=0.012 Sum_probs=64.9
Q ss_pred cCCEEEEEecCchHHHHHHHhc-cCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297 152 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv 229 (269)
..++++|||.|.+|+..++.+. ..+. +|.+|+|+..+...-... ++. .........+++++.+.+||+|
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~-----~~~----~~g~~v~~~~~~~~av~~aDiV 198 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQ-----LSS----LLGIDVTAATDPRAAMSGADII 198 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHH-----HHh----hcCceEEEeCCHHHHhccCCEE
Confidence 3579999999999999999887 4775 699999987652111000 000 0000011246789999999999
Q ss_pred EEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+++.|. +..++..+ .+|+|+.+..++
T Consensus 199 vtaT~s---~~p~i~~~----~l~~g~~i~~vg 224 (326)
T TIGR02992 199 VTTTPS---ETPILHAE----WLEPGQHVTAMG 224 (326)
T ss_pred EEecCC---CCcEecHH----HcCCCcEEEeeC
Confidence 999764 45777763 578899888776
No 191
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.54 E-value=0.00015 Score=66.70 Aligned_cols=69 Identities=28% Similarity=0.285 Sum_probs=50.4
Q ss_pred CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~ 232 (269)
.++|||||-|..|++++.....+|++|++.|++.+...... .+. .....+.+...+.+++.+||+|..=
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~v--------a~~---~i~~~~dD~~al~ela~~~DViT~E 69 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQV--------ADR---VIVAAYDDPEALRELAAKCDVITYE 69 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhc--------ccc---eeecCCCCHHHHHHHHhhCCEEEEe
Confidence 47999999999999999999999999999998776532211 111 0111111345789999999998753
No 192
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.53 E-value=0.00026 Score=61.70 Aligned_cols=37 Identities=41% Similarity=0.583 Sum_probs=33.5
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCC
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~ 185 (269)
.++.+++|+|.|||++|+.+|+.|..+|++|+++..+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 6789999999999999999999999999999966543
No 193
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=97.52 E-value=8.4e-05 Score=71.24 Aligned_cols=87 Identities=10% Similarity=0.087 Sum_probs=64.1
Q ss_pred hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh---CCEEEEecCCCcccc
Q 024297 164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---ADVVVCCLSLNKQTV 240 (269)
Q Consensus 164 iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDvvv~~lp~t~~t~ 240 (269)
||+.+|++|...|++|.+|||++.+...... ..| .. .......+++++++. +|+|++++|..+.+.
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~-------~~g--~~--~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~ 69 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLA-------EEG--KG--KKIVPAYTLEEFVASLEKPRKILLMVKAGAPVD 69 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHH-------hhC--CC--CCeEeeCCHHHHHhhCCCCCEEEEECCCchHHH
Confidence 7999999999999999999998766321110 000 00 001134678888774 899999999988888
Q ss_pred CcCCHHHHhhhCCCCcEEEEccC
Q 024297 241 KLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 241 ~li~~~~l~~~mk~ga~lIN~~R 263 (269)
.+++ +.+. .|.+|.++|+.+-
T Consensus 70 ~Vi~-~l~~-~l~~GdiiID~gn 90 (459)
T PRK09287 70 AVIE-QLLP-LLEKGDIIIDGGN 90 (459)
T ss_pred HHHH-HHHh-cCCCCCEEEECCC
Confidence 8884 4788 8999999999874
No 194
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=97.50 E-value=0.0014 Score=59.70 Aligned_cols=138 Identities=15% Similarity=0.098 Sum_probs=91.6
Q ss_pred hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-CchHHHHHHHh
Q 024297 94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-GNIGVELAKRL 172 (269)
Q Consensus 94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l 172 (269)
.+...+++|.|..+. +..++ .+|.-++.+.+.+ ..+.|.+|+++|= +++.+.++..+
T Consensus 115 ~a~~~~vPVINag~~---~~HPt--QaL~Dl~Ti~e~~-----------------g~l~gl~i~~vGd~~~v~~Sl~~~l 172 (304)
T PRK00779 115 LAEYSTVPVINGLTD---LSHPC--QILADLLTIYEHR-----------------GSLKGLKVAWVGDGNNVANSLLLAA 172 (304)
T ss_pred HHHhCCCCEEeCCCC---CCChH--HHHHHHHHHHHHh-----------------CCcCCcEEEEEeCCCccHHHHHHHH
Confidence 345568999999764 45666 5666666665542 2488999999996 89999999999
Q ss_pred ccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec----CCCc---c-----cc
Q 024297 173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL----SLNK---Q-----TV 240 (269)
Q Consensus 173 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l----p~t~---~-----t~ 240 (269)
..+|++|.++.+..-........ -+.-.+|+ +.....+++++++++|+|.... .... + ..
T Consensus 173 ~~~g~~v~~~~P~~~~~~~~~~~--~~~~~~g~------~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~ 244 (304)
T PRK00779 173 ALLGFDLRVATPKGYEPDPEIVE--KIAKETGA------SIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAP 244 (304)
T ss_pred HHcCCEEEEECCcccCCCHHHHH--HHHHHcCC------eEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcc
Confidence 99999999998743221100000 00000110 0112478999999999999862 1100 1 24
Q ss_pred CcCCHHHHhhhCCCCcEEEEcc
Q 024297 241 KLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 241 ~li~~~~l~~~mk~ga~lIN~~ 262 (269)
.-++++.++ .+|++++|.-+.
T Consensus 245 y~v~~~~l~-~~~~~~ivmHpl 265 (304)
T PRK00779 245 YQVNEELMA-LAKPDAIFMHCL 265 (304)
T ss_pred cCCCHHHHH-hcCCCeEEecCC
Confidence 677899999 899999887765
No 195
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=97.50 E-value=0.0017 Score=59.03 Aligned_cols=141 Identities=16% Similarity=0.113 Sum_probs=90.2
Q ss_pred HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHHHH
Q 024297 95 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELAKR 171 (269)
Q Consensus 95 ~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a~~ 171 (269)
+...+|+|.|..... +..++ .+|+-++.+.+++ ..+.|.+|+++|- +++.+.++..
T Consensus 113 a~~s~vPVINa~~g~--~~HPt--Q~LaDl~Ti~e~~-----------------g~l~g~~va~vGD~~~~~v~~Sl~~~ 171 (301)
T TIGR00670 113 AEVSEVPVINAGDGS--NQHPT--QTLLDLYTIYEEF-----------------GRLDGLKIALVGDLKYGRTVHSLAEA 171 (301)
T ss_pred HhhCCCCEEeCCCCC--CCCcH--HHHHHHHHHHHHh-----------------CCCCCCEEEEEccCCCCcHHHHHHHH
Confidence 444679999986421 23555 5555556555432 2488999999998 4999999999
Q ss_pred hccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCcc------------c
Q 024297 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ------------T 239 (269)
Q Consensus 172 l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~------------t 239 (269)
+..+|++|.++.+..-...... .......|. ......++++.++.+|||...- ...+ .
T Consensus 172 ~a~~g~~v~~~~P~~~~~~~~~---~~~~~~~G~------~v~~~~d~~~a~~~aDvvyt~~-~~~er~~~~~~~~~~~~ 241 (301)
T TIGR00670 172 LTRFGVEVYLISPEELRMPKEI---LEELKAKGI------KVRETESLEEVIDEADVLYVTR-IQKERFPDPEEYEKYKG 241 (301)
T ss_pred HHHcCCEEEEECCccccCCHHH---HHHHHHcCC------EEEEECCHHHHhCCCCEEEECC-ccccccCCHHHHHHHhc
Confidence 9999999999987543111000 000000010 0012478999999999988742 1100 1
Q ss_pred cCcCCHHHHhhhCCCCcEEEEcc-CCCCc
Q 024297 240 VKLCSSSLSSKSMFFATYVVFMF-QGHGV 267 (269)
Q Consensus 240 ~~li~~~~l~~~mk~ga~lIN~~-RG~~v 267 (269)
..-++++.++ .++++++|.-+. ||.=|
T Consensus 242 ~y~v~~ell~-~a~~~ai~mHclPRg~Ev 269 (301)
T TIGR00670 242 SYGITLERLE-AAKKGVIIMHPLPRVDEI 269 (301)
T ss_pred CCeECHHHHh-hcCCCCEEECCCCCCccc
Confidence 4567888899 899999888544 65433
No 196
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.49 E-value=0.00016 Score=64.50 Aligned_cols=98 Identities=14% Similarity=0.105 Sum_probs=63.7
Q ss_pred cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHH-HHhhC
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFE-FASKA 226 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~e-ll~~a 226 (269)
...+++++|+|.|.+|++++..|...|++|++++|+..+...... .....+ ...++++ .+.++
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~--------------~~~~~~~~~~~~~~~~~~~~~ 179 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE--------------RFQRYGEIQAFSMDELPLHRV 179 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------------HHhhcCceEEechhhhcccCc
Confidence 356789999999999999999999999999999987644211000 000000 0112222 23589
Q ss_pred CEEEEecCCCc--cccC-cCCHHHHhhhCCCCcEEEEccCCC
Q 024297 227 DVVVCCLSLNK--QTVK-LCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 227 Dvvv~~lp~t~--~t~~-li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
|+|+++.|... .... .++ .+ .++++.+++++.-.+
T Consensus 180 DivInatp~gm~~~~~~~~~~---~~-~l~~~~~v~D~~y~p 217 (270)
T TIGR00507 180 DLIINATSAGMSGNIDEPPVP---AE-KLKEGMVVYDMVYNP 217 (270)
T ss_pred cEEEECCCCCCCCCCCCCCCC---HH-HcCCCCEEEEeccCC
Confidence 99999999742 2211 222 34 688899999886543
No 197
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.46 E-value=0.00013 Score=70.30 Aligned_cols=76 Identities=20% Similarity=0.264 Sum_probs=51.8
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (269)
+.++.+++++|+|.|.+|+++++.|...|++|++++|+..+...... ..........++.+ +.++|
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~-------------~~~~~~~~~~~~~~-l~~~D 392 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALAS-------------RCQGKAFPLESLPE-LHRID 392 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-------------HhccceechhHhcc-cCCCC
Confidence 45678999999999999999999999999999999987543111000 00000001122222 57899
Q ss_pred EEEEecCCCc
Q 024297 228 VVVCCLSLNK 237 (269)
Q Consensus 228 vvv~~lp~t~ 237 (269)
+|++++|...
T Consensus 393 iVInatP~g~ 402 (477)
T PRK09310 393 IIINCLPPSV 402 (477)
T ss_pred EEEEcCCCCC
Confidence 9999999654
No 198
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.44 E-value=0.00027 Score=65.30 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=59.6
Q ss_pred HHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEEecCCCccccCc
Q 024297 165 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTVKL 242 (269)
Q Consensus 165 G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~t~~t~~l 242 (269)
|..+|..|...|.+|++||++........ .+.....+ ...+..+++++||+|++++|....++.+
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~-------------~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~V 98 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL-------------WKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEI 98 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH-------------HHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHH
Confidence 68889999989999999998764210000 00011111 1246778899999999999955436777
Q ss_pred CCHHHHhhhCCCCcEEEEccCCC
Q 024297 243 CSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 243 i~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
+. .... .+++++++||++-+.
T Consensus 99 l~-~L~~-~L~~g~IVId~ST~~ 119 (342)
T PRK12557 99 AK-NILP-HLPENAVICNTCTVS 119 (342)
T ss_pred HH-HHHh-hCCCCCEEEEecCCC
Confidence 64 4667 889999999998654
No 199
>PLN02527 aspartate carbamoyltransferase
Probab=97.44 E-value=0.0022 Score=58.46 Aligned_cols=142 Identities=17% Similarity=0.087 Sum_probs=90.1
Q ss_pred HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC---chHHHHHHH
Q 024297 95 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG---NIGVELAKR 171 (269)
Q Consensus 95 ~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G---~iG~~~a~~ 171 (269)
+....++|.|..... +..++ .+|+-++.+.+++ ..+.|.||+++|-+ ++.+.++..
T Consensus 114 a~~~~vPVINa~~g~--~~HPt--Q~LaDl~Ti~e~~-----------------g~l~g~kva~vGD~~~~rv~~Sl~~~ 172 (306)
T PLN02527 114 AATAEIPVINAGDGP--GQHPT--QALLDVYTIQREI-----------------GRLDGIKVGLVGDLANGRTVRSLAYL 172 (306)
T ss_pred HHhCCCCEEECCCCC--CCChH--HHHHHHHHHHHHh-----------------CCcCCCEEEEECCCCCChhHHHHHHH
Confidence 445679999985411 33555 5566666665442 24889999999965 689999999
Q ss_pred hccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCc------c------
Q 024297 172 LRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK------Q------ 238 (269)
Q Consensus 172 l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~------~------ 238 (269)
+..+ |++|.++.+..-...... ....-.+| .......++++.+++||||....--.+ +
T Consensus 173 ~~~~~g~~v~~~~P~~~~~~~~~---~~~~~~~g------~~~~~~~d~~~a~~~aDvvyt~~~q~e~~~~~~~~~~~~~ 243 (306)
T PLN02527 173 LAKYEDVKIYFVAPDVVKMKDDI---KDYLTSKG------VEWEESSDLMEVASKCDVLYQTRIQRERFGERIDLYEAAR 243 (306)
T ss_pred HHhcCCCEEEEECCCccCCCHHH---HHHHHHcC------CEEEEEcCHHHHhCCCCEEEECCcchhhhcchHHHHHHhC
Confidence 8887 999999987442111100 00000011 001124789999999999998542100 0
Q ss_pred ccCcCCHHHHhhhCCCCcEEEEcc-CCCCc
Q 024297 239 TVKLCSSSLSSKSMFFATYVVFMF-QGHGV 267 (269)
Q Consensus 239 t~~li~~~~l~~~mk~ga~lIN~~-RG~~v 267 (269)
....++++.++ ..+++++|.-+. ||.=|
T Consensus 244 ~~y~v~~~ll~-~a~~~~ivmHclPRg~Ei 272 (306)
T PLN02527 244 GKYIVDKKVMD-VLPKHAVVMHPLPRLDEI 272 (306)
T ss_pred CCceECHHHHh-ccCCCCEEECCCCCcccc
Confidence 13677888999 899999888654 66433
No 200
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.42 E-value=0.00033 Score=64.01 Aligned_cols=94 Identities=15% Similarity=0.015 Sum_probs=65.3
Q ss_pred cCCEEEEEecCchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297 152 LGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv 229 (269)
.-++++|+|.|..|+..++.+.. +.. +|.+|+|++.+...-... .. .........++.++++++||+|
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~-----~~-----~~~~~v~~~~~~~~av~~ADIV 196 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQY-----AQ-----ALGFAVNTTLDAAEVAHAANLI 196 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHH-----HH-----hcCCcEEEECCHHHHhcCCCEE
Confidence 34699999999999999887764 444 799999987663211100 00 0000000236789999999999
Q ss_pred EEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+.+.| .+..+++.+ .+|||+.++.+|
T Consensus 197 ~taT~---s~~P~~~~~----~l~~G~hi~~iG 222 (315)
T PRK06823 197 VTTTP---SREPLLQAE----DIQPGTHITAVG 222 (315)
T ss_pred EEecC---CCCceeCHH----HcCCCcEEEecC
Confidence 99955 566888764 578999999997
No 201
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.42 E-value=8.5e-05 Score=56.63 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=57.7
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
-.+.|++|.|||.|.+|..-++.|...|++|+++++.... .. ..... ....+++-+..+|+
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~-~~----------------~~i~~--~~~~~~~~l~~~~l 63 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEF-SE----------------GLIQL--IRREFEEDLDGADL 63 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHH-HH----------------TSCEE--EESS-GGGCTTESE
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh-hh----------------hHHHH--HhhhHHHHHhhheE
Confidence 3589999999999999999999999999999999976310 00 01110 11234455788999
Q ss_pred EEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+.+.+. .-+++.... ..+.--+++|+.
T Consensus 64 V~~at~d-----~~~n~~i~~-~a~~~~i~vn~~ 91 (103)
T PF13241_consen 64 VFAATDD-----PELNEAIYA-DARARGILVNVV 91 (103)
T ss_dssp EEE-SS------HHHHHHHHH-HHHHTTSEEEET
T ss_pred EEecCCC-----HHHHHHHHH-HHhhCCEEEEEC
Confidence 9988652 224555555 666667777775
No 202
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.40 E-value=0.00015 Score=66.25 Aligned_cols=105 Identities=17% Similarity=0.241 Sum_probs=59.7
Q ss_pred EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH-hhCCEEEEec
Q 024297 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKADVVVCCL 233 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDvvv~~l 233 (269)
+|+|||.|.+|..+|..|...|.+|..++|+............+..+..+. ..........++.+.+ ..+|+|++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~Dliiiav 79 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTC--HLPDNISVKSAIDEVLSDNATCIILAV 79 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCC--cCCCCeEEeCCHHHHHhCCCCEEEEEe
Confidence 699999999999999999999999999998643110000000000000000 0000000125666766 5899999999
Q ss_pred CCCccccCcCCHHHHhh-hCCCCcEEEEccCC
Q 024297 234 SLNKQTVKLCSSSLSSK-SMFFATYVVFMFQG 264 (269)
Q Consensus 234 p~t~~t~~li~~~~l~~-~mk~ga~lIN~~RG 264 (269)
|. .++...+.. +.. .+++++.+|...-|
T Consensus 80 ks-~~~~~~l~~--l~~~~l~~~~~vv~~~nG 108 (326)
T PRK14620 80 PT-QQLRTICQQ--LQDCHLKKNTPILICSKG 108 (326)
T ss_pred CH-HHHHHHHHH--HHHhcCCCCCEEEEEEcC
Confidence 83 344443332 221 34566666665544
No 203
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.37 E-value=0.0011 Score=57.38 Aligned_cols=36 Identities=42% Similarity=0.613 Sum_probs=31.9
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcC
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~ 184 (269)
.++.|++|.|.|||++|+.+|+.|...|.+|+++..
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD 54 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSD 54 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEc
Confidence 578999999999999999999999999997666543
No 204
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.34 E-value=0.00016 Score=65.00 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=52.8
Q ss_pred cccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
.+.++++.|||.|.+|++++..|...|+ +|++++|+.++....... + ... ..........++.+.+.++|+
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~---~--~~~---~~~~~~~~~~~~~~~~~~~Di 193 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDL---G--VQV---GVITRLEGDSGGLAIEKAAEV 193 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH---h--hhc---CcceeccchhhhhhcccCCCE
Confidence 4678999999999999999999999998 699999986552111100 0 000 000000011234566789999
Q ss_pred EEEecCCCc
Q 024297 229 VVCCLSLNK 237 (269)
Q Consensus 229 vv~~lp~t~ 237 (269)
||++.|...
T Consensus 194 VInaTp~g~ 202 (282)
T TIGR01809 194 LVSTVPADV 202 (282)
T ss_pred EEECCCCCC
Confidence 999988653
No 205
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.34 E-value=0.00017 Score=66.95 Aligned_cols=97 Identities=20% Similarity=0.275 Sum_probs=61.7
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccc-------ccc---ccccC--CCCCHHH
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII-------DDL---VDEKG--CHEDIFE 221 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~--~~~~l~e 221 (269)
.+|||||+|-||..+|-.+...|++|+++|.+..+-. .+.+|.+ ++. ..+.+ ..+.-.+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd---------~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~ 80 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVD---------KLNRGESYIEEPDLDEVVKEAVESGKLRATTDPE 80 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHH---------HHhCCcceeecCcHHHHHHHHHhcCCceEecChh
Confidence 7999999999999999999999999999998765421 1122210 000 01111 1222224
Q ss_pred HHhhCCEEEEecCCCccccC-------cCCH-HHHhhhCCCCcEEEE
Q 024297 222 FASKADVVVCCLSLNKQTVK-------LCSS-SLSSKSMFFATYVVF 260 (269)
Q Consensus 222 ll~~aDvvv~~lp~t~~t~~-------li~~-~~l~~~mk~ga~lIN 260 (269)
.++.||++++|+| ||-+.+ +.+. +.++..|++|.++|=
T Consensus 81 ~l~~~dv~iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIl 126 (436)
T COG0677 81 ELKECDVFIICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVIL 126 (436)
T ss_pred hcccCCEEEEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEE
Confidence 4669999999999 665542 1111 123337999987763
No 206
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.33 E-value=0.00027 Score=64.55 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=54.6
Q ss_pred CEEEEEecCchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCC
Q 024297 154 KTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKAD 227 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aD 227 (269)
++++|||.|..|+.-++.+.. ++. +|.+|+|+..+...-. ......+ ..++.++++++||
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~--------------~~~~~~~~~v~~~~~~~~av~~aD 194 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFA--------------ARLRDLGVPVVAVDSAEEAVRGAD 194 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHH--------------HHHHCCCTCEEEESSHHHHHTTSS
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHH--------------HhhccccccceeccchhhhcccCC
Confidence 589999999999999998775 666 7999999865421111 0111111 2468999999999
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
+|+.+.|.+..+ .+++.+ .+++|+.++.+|..
T Consensus 195 ii~taT~s~~~~-P~~~~~----~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 195 IIVTATPSTTPA-PVFDAE----WLKPGTHINAIGSY 226 (313)
T ss_dssp EEEE----SSEE-ESB-GG----GS-TT-EEEE-S-S
T ss_pred EEEEccCCCCCC-ccccHH----HcCCCcEEEEecCC
Confidence 999996644322 788774 57899999999853
No 207
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=97.32 E-value=0.0034 Score=57.12 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=90.8
Q ss_pred hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-CchHHHHHHHh
Q 024297 94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-GNIGVELAKRL 172 (269)
Q Consensus 94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l 172 (269)
.++..+++|.|..+. +..++ .+|.-++.+.+.+ ..+.|.+|+++|= +++.+.++..+
T Consensus 111 ~a~~~~vPVINa~~~---~~HPt--QaL~Dl~Ti~e~~-----------------g~l~g~~v~~vGd~~~v~~Sl~~~l 168 (304)
T TIGR00658 111 LAKYASVPVINGLTD---LFHPC--QALADLLTIIEHF-----------------GKLKGVKVVYVGDGNNVCNSLMLAG 168 (304)
T ss_pred HHHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHh-----------------CCCCCcEEEEEeCCCchHHHHHHHH
Confidence 345567999999654 45666 5666666665442 2388999999995 78999999999
Q ss_pred ccCCCEEEEEcCCCCCccccccc-cchhhhccccccccccccCCCCCHHHHHhhCCEEEEec--CCCc----------cc
Q 024297 173 RPFGVKIIATKRSWASHSQVSCQ-SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL--SLNK----------QT 239 (269)
Q Consensus 173 ~~~G~~V~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l--p~t~----------~t 239 (269)
..||++|.++.+..-........ -..++..+| .......++++.++++|||..-. +... ..
T Consensus 169 ~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g------~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~ 242 (304)
T TIGR00658 169 AKLGMDVVVATPEGYEPDADIVKKAQEIAKENG------GSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFR 242 (304)
T ss_pred HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC------CeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhc
Confidence 99999999998643221100000 000000011 00112478999999999999853 1110 12
Q ss_pred cCcCCHHHHhhhCCCCcEEEEcc
Q 024297 240 VKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 240 ~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
..-++++.++ .+|++++|.-+.
T Consensus 243 ~y~l~~~~l~-~~~~~~ivmHpl 264 (304)
T TIGR00658 243 PYQVNEELME-LAKPEVIFMHCL 264 (304)
T ss_pred CCcCCHHHHh-hcCCCCEEECCC
Confidence 4578999999 899999887665
No 208
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.32 E-value=0.00057 Score=61.67 Aligned_cols=110 Identities=12% Similarity=0.016 Sum_probs=63.7
Q ss_pred cccCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCC--CccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWA--SHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
.+.++++.|+|.|.+|++++..|...|++ |++++|+.. ........ .+.-..+.............++.+.+..+
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~--~l~~~~~~~~~~~~d~~~~~~~~~~~~~~ 200 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAE--KIKQEVPECIVNVYDLNDTEKLKAEIASS 200 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHH--HHhhcCCCceeEEechhhhhHHHhhhccC
Confidence 47889999999999999999999999996 999999752 11111000 00000000000000011122455667789
Q ss_pred CEEEEecCCCc--cccC-cCCHHHHhhhCCCCcEEEEccCC
Q 024297 227 DVVVCCLSLNK--QTVK-LCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 227 Dvvv~~lp~t~--~t~~-li~~~~l~~~mk~ga~lIN~~RG 264 (269)
|+||++.|.-- .+.. .+. ... .++++.+++++--.
T Consensus 201 DilINaTp~Gm~~~~~~~~~~--~~~-~l~~~~~v~D~vY~ 238 (289)
T PRK12548 201 DILVNATLVGMKPNDGETNIK--DTS-VFRKDLVVADTVYN 238 (289)
T ss_pred CEEEEeCCCCCCCCCCCCCCC--cHH-hcCCCCEEEEecCC
Confidence 99999998642 1111 121 124 56778888877543
No 209
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.32 E-value=0.0001 Score=63.11 Aligned_cols=106 Identities=22% Similarity=0.273 Sum_probs=64.9
Q ss_pred CCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchh---------------hh---c
Q 024297 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSAL---------------AV---K 202 (269)
Q Consensus 142 ~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~---------------~~---~ 202 (269)
.|.......|.+++|.|+|.|.+|..+|+.|...|. +++.+|+..-... ....+.-| .+ .
T Consensus 10 ~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~s-NL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 10 DIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLS-NLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred hcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEccc-chhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 355555567999999999999999999999999998 8999997532110 00000000 00 0
Q ss_pred cccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297 203 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS 249 (269)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~ 249 (269)
+...-+........+++.++++++|+|+.+.. +.+++..+++...+
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~ 134 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVA 134 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 00000000001122346788999999999875 56677777774444
No 210
>PRK06046 alanine dehydrogenase; Validated
Probab=97.30 E-value=0.00053 Score=62.96 Aligned_cols=93 Identities=18% Similarity=0.131 Sum_probs=62.0
Q ss_pred CCEEEEEecCchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297 153 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv 230 (269)
-+++||||.|.+|+..++.+.. .+. +|.+++|+..+...-... + . +..........++++++. +|+|+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~---~--~----~~~~~~v~~~~~~~~~l~-aDiVv 198 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVER---M--S----SVVGCDVTVAEDIEEACD-CDILV 198 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHH---H--H----hhcCceEEEeCCHHHHhh-CCEEE
Confidence 4699999999999999998874 466 588899876542111100 0 0 000000001357888887 99999
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
++.|. +..++..+ .+|+|+.+..+|
T Consensus 199 ~aTps---~~P~~~~~----~l~~g~hV~~iG 223 (326)
T PRK06046 199 TTTPS---RKPVVKAE----WIKEGTHINAIG 223 (326)
T ss_pred EecCC---CCcEecHH----HcCCCCEEEecC
Confidence 99774 45777764 578999988887
No 211
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.29 E-value=0.00023 Score=61.00 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=36.1
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
.-++.|++|.|||.|.+|...++.|...|++|+++++...
T Consensus 5 ~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~ 44 (202)
T PRK06718 5 MIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELT 44 (202)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 4579999999999999999999999999999999987543
No 212
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=97.28 E-value=0.0027 Score=58.38 Aligned_cols=138 Identities=17% Similarity=0.093 Sum_probs=88.3
Q ss_pred hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--chHHHHHHH
Q 024297 94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAKR 171 (269)
Q Consensus 94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--~iG~~~a~~ 171 (269)
.+...+|+|.|..+. +..++ .+|+-++.+.+.+ ..+.|+||+++|-+ ++.+.++..
T Consensus 118 ~a~~~~vPVINa~~~---~~HPt--QaLaDl~Ti~e~~-----------------g~l~g~~va~vGd~~~~v~~Sl~~~ 175 (331)
T PRK02102 118 LAKYSGVPVWNGLTD---EWHPT--QMLADFMTMKEHF-----------------GPLKGLKLAYVGDGRNNMANSLMVG 175 (331)
T ss_pred HHHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHh-----------------CCCCCCEEEEECCCcccHHHHHHHH
Confidence 345568999998664 45666 5566666655432 24889999999986 899999999
Q ss_pred hccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCCEEEEecCC--Cc-----c--
Q 024297 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCLSL--NK-----Q-- 238 (269)
Q Consensus 172 l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDvvv~~lp~--t~-----~-- 238 (269)
+..+|++|.++.+..-...... ...+ .......+ ..++++++++++|||..-+=. .. +
T Consensus 176 ~~~~g~~v~~~~P~~~~~~~~~---~~~~------~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~w~~~~~~~~~~~~~ 246 (331)
T PRK02102 176 GAKLGMDVRICAPKELWPEEEL---VALA------REIAKETGAKITITEDPEEAVKGADVIYTDVWVSMGEEDEWEERI 246 (331)
T ss_pred HHHcCCEEEEECCcccccCHHH---HHHH------HHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccchHHHH
Confidence 9999999999986432211000 0000 00001111 237899999999999986310 00 0
Q ss_pred ---ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 239 ---TVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 239 ---t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
...-++++.+++.+|++++|.-+.
T Consensus 247 ~~~~~y~vt~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 247 KLLKPYQVNMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred HhccCCcCCHHHHhhhcCCCCEEECCC
Confidence 245678888872268898887553
No 213
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.27 E-value=0.00093 Score=63.62 Aligned_cols=113 Identities=17% Similarity=0.104 Sum_probs=64.6
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCc-----ccccccc--chhhhc-cccccccccccC-CCCC
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----SQVSCQS--SALAVK-NGIIDDLVDEKG-CHED 218 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~--~~~~~~-~~~~~~~~~~~~-~~~~ 218 (269)
|.+|.|++|.|.|+|++|+..|+.|..+|++|++++.+...- ....... ..+.-. ++.+.......+ ...+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 467999999999999999999999999999999965422110 0000000 000000 111111111001 1112
Q ss_pred HHHHH-hhCCEEEEecCCCccccCcCCHHHHhhhCCC-Cc-EEEEccCCCC
Q 024297 219 IFEFA-SKADVVVCCLSLNKQTVKLCSSSLSSKSMFF-AT-YVVFMFQGHG 266 (269)
Q Consensus 219 l~ell-~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~-ga-~lIN~~RG~~ 266 (269)
-++++ ..|||++-| .+.+.|+.+... .++. |. +++--|-|++
T Consensus 303 ~d~~~~~~cDIliPa-----Al~n~I~~~na~-~l~a~g~~~V~EgAN~P~ 347 (444)
T PRK14031 303 GARPWGEKGDIALPS-----ATQNELNGDDAR-QLVANGVIAVSEGANMPS 347 (444)
T ss_pred CcccccCCCcEEeec-----ccccccCHHHHH-HHHhcCCeEEECCCCCCC
Confidence 23333 378988877 467889998888 7764 43 4555555544
No 214
>PLN02342 ornithine carbamoyltransferase
Probab=97.24 E-value=0.0031 Score=58.34 Aligned_cols=138 Identities=15% Similarity=0.073 Sum_probs=90.2
Q ss_pred hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-CchHHHHHHHh
Q 024297 94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-GNIGVELAKRL 172 (269)
Q Consensus 94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l 172 (269)
.+...+++|.|..+. ...++ .+|+-++.+.+.+ ..+.|+||+++|= .++.+.++..+
T Consensus 157 la~~~~vPVINA~~~---~~HPt--QaLaDl~Ti~e~~-----------------G~l~glkva~vGD~~nva~Sli~~~ 214 (348)
T PLN02342 157 LAEYSSVPVINGLTD---YNHPC--QIMADALTIIEHI-----------------GRLEGTKVVYVGDGNNIVHSWLLLA 214 (348)
T ss_pred HHHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHh-----------------CCcCCCEEEEECCCchhHHHHHHHH
Confidence 345567999998654 44666 5666666665442 2488999999995 56888999999
Q ss_pred ccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec----CCCcc--------cc
Q 024297 173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL----SLNKQ--------TV 240 (269)
Q Consensus 173 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l----p~t~~--------t~ 240 (269)
..+|++|.++.+..-...... ....-..| ........+++++++.+|||.... -..+. ..
T Consensus 215 ~~~G~~v~~~~P~~~~~~~~~---~~~a~~~g-----~~~~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~ 286 (348)
T PLN02342 215 AVLPFHFVCACPKGYEPDAKT---VEKARAAG-----ISKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQG 286 (348)
T ss_pred HHcCCEEEEECCcccccCHHH---HHHHHHhC-----CCcEEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccC
Confidence 999999999987442211000 00000000 001112478999999999999873 11110 23
Q ss_pred CcCCHHHHhhhCCCCcEEEEcc
Q 024297 241 KLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 241 ~li~~~~l~~~mk~ga~lIN~~ 262 (269)
.-++++.++ .+|++++|.-+.
T Consensus 287 y~vt~ell~-~ak~~aivMHpL 307 (348)
T PLN02342 287 FQVNEALMK-LAGPQAYFMHCL 307 (348)
T ss_pred CccCHHHHh-ccCCCcEEeCCC
Confidence 678999999 999999988765
No 215
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=97.24 E-value=0.0028 Score=58.42 Aligned_cols=142 Identities=13% Similarity=0.036 Sum_probs=88.5
Q ss_pred hhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--chHHHHHH
Q 024297 93 NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAK 170 (269)
Q Consensus 93 ~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--~iG~~~a~ 170 (269)
..+...+|+|.|.-+. +..++ .+|+-++.+.+.. |..+.|++|+++|=+ ++.+.++.
T Consensus 117 ~~a~~~~vPVINa~~~---~~HPt--QaL~Dl~Ti~e~~----------------g~~l~gl~ia~vGD~~~~v~~Sl~~ 175 (334)
T PRK01713 117 ELAEYAGVPVFNGLTD---EFHPT--QMLADVLTMIENC----------------DKPLSEISYVYIGDARNNMGNSLLL 175 (334)
T ss_pred HHHHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHc----------------CCCcCCcEEEEECCCccCHHHHHHH
Confidence 3455568999999653 45666 5566666655431 335889999999975 68999999
Q ss_pred HhccCCCEEEEEcCCCCCccccc-cccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec----CC---C------
Q 024297 171 RLRPFGVKIIATKRSWASHSQVS-CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL----SL---N------ 236 (269)
Q Consensus 171 ~l~~~G~~V~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l----p~---t------ 236 (269)
.+..+|++|.++.+..-...... ..-..++-.+|. ......++++.++++|||..-. .. .
T Consensus 176 ~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~------~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~ 249 (334)
T PRK01713 176 IGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGA------RITVTDDIDKAVKGVDFVHTDVWVSMGEPLETWGERIK 249 (334)
T ss_pred HHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCC------eEEEEcCHHHHhCCCCEEEEcceeecccchhhHHHHHH
Confidence 99999999999986432211000 000000000010 0112478999999999998843 10 0
Q ss_pred ccccCcCCHHHHhhhC-CCCcEEEEcc
Q 024297 237 KQTVKLCSSSLSSKSM-FFATYVVFMF 262 (269)
Q Consensus 237 ~~t~~li~~~~l~~~m-k~ga~lIN~~ 262 (269)
.....-++.+.++ .. |++++|.-+.
T Consensus 250 ~~~~y~v~~ell~-~a~k~~aivmH~l 275 (334)
T PRK01713 250 LLMPYQVTPELMK-RTGNPKVKFMHCL 275 (334)
T ss_pred hccCCcCCHHHHh-ccCCCCCEEECCC
Confidence 0013457888888 75 7899887654
No 216
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.23 E-value=0.00048 Score=59.16 Aligned_cols=96 Identities=16% Similarity=0.217 Sum_probs=60.1
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
-++.|++|.|||.|.+|..-++.|..+|++|+++++...+...... ..|.+ .... ..+. .+.+..+|+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~-------~~~~i-~~~~--~~~~--~~dl~~~~l 72 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLA-------EQGGI-TWLA--RCFD--ADILEGAFL 72 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHH-------HcCCE-EEEe--CCCC--HHHhCCcEE
Confidence 5689999999999999999999999999999999976543211100 00100 0000 1111 355788998
Q ss_pred EEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+.+... + -+|..... ..+...++||+.
T Consensus 73 Vi~at~d-~----~ln~~i~~-~a~~~~ilvn~~ 100 (205)
T TIGR01470 73 VIAATDD-E----ELNRRVAH-AARARGVPVNVV 100 (205)
T ss_pred EEECCCC-H----HHHHHHHH-HHHHcCCEEEEC
Confidence 8877442 2 12444555 555556667653
No 217
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.23 E-value=0.0012 Score=62.84 Aligned_cols=36 Identities=25% Similarity=0.580 Sum_probs=33.6
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEc
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~ 183 (269)
+.++.|++|.|.|||++|+.+|+.|..+|++|+++.
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavs 262 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCS 262 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 467999999999999999999999999999999983
No 218
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=97.23 E-value=0.0037 Score=57.68 Aligned_cols=142 Identities=12% Similarity=0.038 Sum_probs=89.5
Q ss_pred HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-CchHHHHHHHhc
Q 024297 95 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-GNIGVELAKRLR 173 (269)
Q Consensus 95 ~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l~ 173 (269)
+...+|+|.|.-+. ...++ .+|+-++.+.+.+ | .+..+.|.+|+++|= .++.+.++..+.
T Consensus 115 a~~~~vPVINa~~~---~~HPt--QaLaDl~Ti~e~~---------g-----~g~~l~glkv~~vGD~~~v~~Sl~~~~~ 175 (338)
T PRK02255 115 AKYATVPVINGMSD---YNHPT--QELGDLFTMIEHL---------P-----EGKKLEDCKVVFVGDATQVCVSLMFIAT 175 (338)
T ss_pred HHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHh---------C-----CCCCCCCCEEEEECCCchHHHHHHHHHH
Confidence 44567999996553 44666 5555666655432 0 123589999999996 789999999999
Q ss_pred cCCCEEEEEcCCCCCccccccccc-hhhhccccccccccccCCCCCHHHHHhhCCEEEEec---CCCc-----c------
Q 024297 174 PFGVKIIATKRSWASHSQVSCQSS-ALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL---SLNK-----Q------ 238 (269)
Q Consensus 174 ~~G~~V~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l---p~t~-----~------ 238 (269)
.+|++|.++.+..-.......... ..+-.+|. ......+++++++++|||..-. .... +
T Consensus 176 ~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~------~~~~~~d~~eav~~aDvvy~~~w~~~~~~~~~~~~r~~~~~ 249 (338)
T PRK02255 176 KMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGG------SVLVTDDVDEAVKDADFVYTDVWYGLYDAELSEEERMAIFY 249 (338)
T ss_pred hCCCEEEEECCCccccCHHHHHHHHHHHHhcCC------eEEEEcCHHHHhCCCCEEEEcccHhhccchhhHHHHHHhhC
Confidence 999999999874321100000000 00000010 0112478999999999999843 1111 0
Q ss_pred ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 239 TVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 239 t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
-..-++++.++ .+|++++|.-+.
T Consensus 250 ~~y~v~~ell~-~a~~~~ivmHpL 272 (338)
T PRK02255 250 PKYQVTPELMA-KAGPHAKFMHCL 272 (338)
T ss_pred CCceECHHHHh-ccCCCCEEeCCC
Confidence 13678999999 899999887765
No 219
>PLN02477 glutamate dehydrogenase
Probab=97.19 E-value=0.0016 Score=61.46 Aligned_cols=102 Identities=23% Similarity=0.254 Sum_probs=62.0
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccc-ccc---------cc-C-C
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD-LVD---------EK-G-C 215 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~-~-~ 215 (269)
+.++.|++|.|.|||++|+.+|+.|...|++|+++..+... ...++|+..+ +.. .+ . .
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~----------iy~~~GLD~~~L~~~k~~~g~l~~~~~a~ 270 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGA----------VKNENGLDIPALRKHVAEGGGLKGFPGGD 270 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCe----------EECCCCCCHHHHHHHHHhcCchhccccce
Confidence 46799999999999999999999999999999965432210 1111222110 100 00 0 0
Q ss_pred CCCHHHH-HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297 216 HEDIFEF-ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG 266 (269)
Q Consensus 216 ~~~l~el-l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~ 266 (269)
..+-+++ ..+|||++-|. ..+.|+++... .++ -.+++--+=|++
T Consensus 271 ~i~~~e~l~~~~DvliP~A-----l~~~I~~~na~-~i~-ak~I~egAN~p~ 315 (410)
T PLN02477 271 PIDPDDILVEPCDVLIPAA-----LGGVINKENAA-DVK-AKFIVEAANHPT 315 (410)
T ss_pred EecCccceeccccEEeecc-----ccccCCHhHHH-HcC-CcEEEeCCCCCC
Confidence 1111222 33899998883 55788888888 664 345555544444
No 220
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.19 E-value=0.00087 Score=61.54 Aligned_cols=94 Identities=17% Similarity=0.119 Sum_probs=67.1
Q ss_pred CCEEEEEecCchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297 153 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv 230 (269)
-++++|||.|..++.-++.++. ++. +|.+|+|++.....-... +. ...........+.+++++.||+|+
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~---l~------~~~~~~v~a~~s~~~av~~aDiIv 200 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAAR---LR------KRGGEAVGAADSAEEAVEGADIVV 200 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHH---HH------hhcCccceeccCHHHHhhcCCEEE
Confidence 3589999999999999999885 676 799999987653221100 00 001111124578899999999999
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
.+.|. +..++..+ .++||+.+..+|
T Consensus 201 t~T~s---~~Pil~~~----~l~~G~hI~aiG 225 (330)
T COG2423 201 TATPS---TEPVLKAE----WLKPGTHINAIG 225 (330)
T ss_pred EecCC---CCCeecHh----hcCCCcEEEecC
Confidence 99764 44888774 567999999887
No 221
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=97.18 E-value=0.0041 Score=59.02 Aligned_cols=141 Identities=15% Similarity=0.102 Sum_probs=88.9
Q ss_pred hHhcCCcEEEecCC-CCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHH
Q 024297 94 AATRCGIKVARIPG-DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELA 169 (269)
Q Consensus 94 ~~~~~gI~v~n~~~-~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a 169 (269)
.+...+|+|.|..+ . +..++ .+|+-++.+..++ |. .+..+.|+||+++|- +++.+.++
T Consensus 199 ~A~~s~vPVINAgdg~---~~HPt--QaLaDl~Ti~E~~---------g~----~g~~l~G~kIa~vGD~~~~rv~~Sl~ 260 (429)
T PRK11891 199 FARATNLPVINGGDGP---GEHPS--QALLDLYTIQREF---------SR----LGKIVDGAHIALVGDLKYGRTVHSLV 260 (429)
T ss_pred HHHhCCCCEEECCCCC---CCCcH--HHHHHHHHHHHHh---------Cc----cCCCcCCCEEEEECcCCCChHHHHHH
Confidence 34566899999873 4 34555 5555555555432 10 123488999999997 59999999
Q ss_pred HHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCcc----------
Q 024297 170 KRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ---------- 238 (269)
Q Consensus 170 ~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~---------- 238 (269)
..+..+ |++|.++.+..-...... ......+|. ......+++++++++|||....--.+.
T Consensus 261 ~~la~~~G~~v~l~~P~~~~~~~~~---~~~~~~~G~------~v~~~~d~~eav~~ADVVYt~~~q~er~~~~~~~~~~ 331 (429)
T PRK11891 261 KLLALYRGLKFTLVSPPTLEMPAYI---VEQISRNGH------VIEQTDDLAAGLRGADVVYATRIQKERFADESFEGYT 331 (429)
T ss_pred HHHHHhcCCEEEEECCCccccCHHH---HHHHHhcCC------eEEEEcCHHHHhCCCCEEEEcCchhhcccCHHHHHhc
Confidence 998876 999999987442111000 000000110 011247899999999999985421000
Q ss_pred ccCcCCHHHHhhh-CCCCcEEEEcc
Q 024297 239 TVKLCSSSLSSKS-MFFATYVVFMF 262 (269)
Q Consensus 239 t~~li~~~~l~~~-mk~ga~lIN~~ 262 (269)
...-++++.++ . .|++++|.-+.
T Consensus 332 ~~y~vt~ell~-~~ak~dai~MHcL 355 (429)
T PRK11891 332 PDFQINQALVD-AVCKPDTLIMHPL 355 (429)
T ss_pred cCCcCCHHHHh-CccCCCcEEECCC
Confidence 13567899998 7 89999888654
No 222
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.18 E-value=0.00087 Score=60.90 Aligned_cols=90 Identities=11% Similarity=0.056 Sum_probs=63.6
Q ss_pred CCEEEEEecCchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhC
Q 024297 153 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA 226 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a 226 (269)
-+++||||.|..|+..++.+.. +.. +|.+|+|+..+...-.. ......+ ...+.++++.+|
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~-------------~~~~~~~~~v~~~~~~~eav~~a 183 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAE-------------RFSKEFGVDIRPVDNAEAALRDA 183 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHH-------------HHHHhcCCcEEEeCCHHHHHhcC
Confidence 5799999999999988887775 555 79999998765321100 0111111 236799999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+|+.+.| .+..++..+ .+|||+.+.-+|
T Consensus 184 DIV~taT~---s~~P~~~~~----~l~pg~hV~aiG 212 (301)
T PRK06407 184 DTITSITN---SDTPIFNRK----YLGDEYHVNLAG 212 (301)
T ss_pred CEEEEecC---CCCcEecHH----HcCCCceEEecC
Confidence 99999865 556888774 467887776665
No 223
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.14 E-value=0.00039 Score=64.16 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=65.2
Q ss_pred CCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchh-----------------h---
Q 024297 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSAL-----------------A--- 200 (269)
Q Consensus 142 ~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~-----------------~--- 200 (269)
.|.......|.+++|.|||.|.+|..+|+.|...|. +++.+|+..-.. .......-| .
T Consensus 13 ~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~-sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 13 GIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEW-SNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred hcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccc-cccCccccccHHHccCCccHHHHHHHHHHH
Confidence 344444567999999999999999999999999998 899999754110 000000000 0
Q ss_pred hccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHH
Q 024297 201 VKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLS 248 (269)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l 248 (269)
..++..-..........+++++++++|+|+.+.- +.+++.++|.-..
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D-~~~~r~~in~~~~ 138 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATD-NFDTRLLINDLSQ 138 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHH
Confidence 0000000000001122457889999999999984 6678888777443
No 224
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=97.12 E-value=0.00099 Score=62.32 Aligned_cols=102 Identities=23% Similarity=0.311 Sum_probs=67.5
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccc-----------ccccccC-C
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID-----------DLVDEKG-C 215 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~-~ 215 (269)
+..+.|+||.|=|+|++|+.+|+.|...|.+|++++.+..-- ..++|+.. ......+ .
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i----------~~~~Gld~~~l~~~~~~~~~v~~~~ga~ 271 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGI----------YDEDGLDVEALLELKERRGSVAEYAGAE 271 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCce----------ecCCCCCHHHHHHHhhhhhhHHhhcCce
Confidence 344999999999999999999999999999999998765410 00111100 0111111 2
Q ss_pred CCCHHHHHh-hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297 216 HEDIFEFAS-KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG 266 (269)
Q Consensus 216 ~~~l~ell~-~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~ 266 (269)
..+-++++. .|||++=| .+.+.|+.+... .++.. +++--+-|++
T Consensus 272 ~i~~~e~~~~~cDIl~Pc-----A~~n~I~~~na~-~l~ak-~V~EgAN~P~ 316 (411)
T COG0334 272 YITNEELLEVDCDILIPC-----ALENVITEDNAD-QLKAK-IVVEGANGPT 316 (411)
T ss_pred EccccccccccCcEEccc-----ccccccchhhHH-Hhhhc-EEEeccCCCC
Confidence 222255555 79988776 577889888888 77766 6665555554
No 225
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.12 E-value=0.00051 Score=66.14 Aligned_cols=106 Identities=12% Similarity=0.103 Sum_probs=63.0
Q ss_pred CEEEEEecCchHHHHHHHhccC--CCEEEEEcCCCCCccccccccchhhhccccccccccc-----cCCCCCHHHHHhhC
Q 024297 154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-----KGCHEDIFEFASKA 226 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~ell~~a 226 (269)
.+|+|||.|.+|..+|-.|... |++|+++|.+..+-...-.....+ ...+..++..+ .....++.+.+++|
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~--~e~gl~ell~~~~~~~l~~t~~~~~~i~~a 79 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPI--YEPGLDEVVKQCRGKNLFFSTDVEKHVAEA 79 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCcc--CCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence 5799999999999999999865 689999998765421110000000 00011112111 11225677889999
Q ss_pred CEEEEecCCCcccc------------CcCCH-HHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTV------------KLCSS-SLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~------------~li~~-~~l~~~mk~ga~lIN~~ 262 (269)
|++++|+| ||... ++.+. +.+...++++.++|.-+
T Consensus 80 dvi~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~S 127 (473)
T PLN02353 80 DIVFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (473)
T ss_pred CEEEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeC
Confidence 99999998 44321 11111 12333688899888643
No 226
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.11 E-value=0.0005 Score=59.32 Aligned_cols=92 Identities=24% Similarity=0.266 Sum_probs=58.3
Q ss_pred CEEEEEecCchHHHHHHHhcc--CCCE-EEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCE
Q 024297 154 KTVFILGFGNIGVELAKRLRP--FGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV 228 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~--~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDv 228 (269)
.+|||||+|.||+.+.+.++. .+++ |.+||++.++.. +...... ...++++++++.|+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~-----------------~~~~~~~~~~~s~ide~~~~~Dl 63 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAK-----------------ELEASVGRRCVSDIDELIAEVDL 63 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHH-----------------HHHhhcCCCccccHHHHhhccce
Confidence 379999999999999999984 4565 888888766521 1112222 23678899999998
Q ss_pred EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS 268 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd 268 (269)
|+=|.... ..+.+ ..+ .|+.|-=+|-++=|.+.|
T Consensus 64 vVEaAS~~-Av~e~----~~~-~L~~g~d~iV~SVGALad 97 (255)
T COG1712 64 VVEAASPE-AVREY----VPK-ILKAGIDVIVMSVGALAD 97 (255)
T ss_pred eeeeCCHH-HHHHH----hHH-HHhcCCCEEEEechhccC
Confidence 88886421 22222 122 455555455555555544
No 227
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.09 E-value=0.0011 Score=60.87 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=61.7
Q ss_pred cCCEEEEEecCchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297 152 LGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv 229 (269)
..++++|||.|.+|+..+..+.. .+. +|.+|+|+..+...-... +.-..| .......++++++.++|+|
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~---~~~~~g------~~v~~~~d~~~al~~aDiV 201 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAAD---LRAELG------IPVTVARDVHEAVAGADII 201 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH---HhhccC------ceEEEeCCHHHHHccCCEE
Confidence 35799999999999998888774 564 799999986652111000 000000 0001246789999999999
Q ss_pred EEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+++.|. ...++..+ .+++|+.+..++
T Consensus 202 i~aT~s---~~p~i~~~----~l~~g~~v~~vg 227 (330)
T PRK08291 202 VTTTPS---EEPILKAE----WLHPGLHVTAMG 227 (330)
T ss_pred EEeeCC---CCcEecHH----HcCCCceEEeeC
Confidence 999764 45777663 367787665543
No 228
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.09 E-value=0.00098 Score=62.49 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=65.8
Q ss_pred CCEEEEEecCchHHHHHHHhcc-CC-C-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297 153 GKTVFILGFGNIGVELAKRLRP-FG-V-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~-~G-~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv 229 (269)
-++++|||.|..++..++.+.. +. . +|.+|+|+..+...-... ..-.++ |. .......+.++++++||+|
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~-~~~~~~-~~-----~~v~~~~s~~eav~~ADIV 227 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATW-VAETYP-QI-----TNVEVVDSIEEVVRGSDIV 227 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHH-HHHhcC-CC-----ceEEEeCCHHHHHcCCCEE
Confidence 4699999999999999998876 42 4 799999987653211000 000000 00 0011236899999999999
Q ss_pred EEecCCCc---cccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 230 VCCLSLNK---QTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 230 v~~lp~t~---~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
+.+.+.+. .+..++..+ .+|+|+.++.++.
T Consensus 228 vtaT~s~~~~~s~~Pv~~~~----~lkpG~hv~~ig~ 260 (379)
T PRK06199 228 TYCNSGETGDPSTYPYVKRE----WVKPGAFLLMPAA 260 (379)
T ss_pred EEccCCCCCCCCcCcEecHH----HcCCCcEEecCCc
Confidence 99976433 345788763 5788998887764
No 229
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=97.09 E-value=0.0047 Score=56.92 Aligned_cols=141 Identities=12% Similarity=0.031 Sum_probs=88.5
Q ss_pred hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--chHHHHHHH
Q 024297 94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAKR 171 (269)
Q Consensus 94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--~iG~~~a~~ 171 (269)
.+...+|+|.|.-+. +..++ .+|+-++.+.+.+ . ..+.|++|+++|-+ ++.+.++..
T Consensus 117 ~a~~s~vPVINa~~~---~~HPt--QaL~Dl~Ti~e~~---------------~-g~l~g~kia~vGD~~~~v~~Sl~~~ 175 (332)
T PRK04284 117 LAEYSGVPVWNGLTD---EDHPT--QVLADFLTAKEHL---------------K-KPYKDIKFTYVGDGRNNVANALMQG 175 (332)
T ss_pred HHHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHh---------------c-CCcCCcEEEEecCCCcchHHHHHHH
Confidence 345567999997553 45666 5666666665431 1 24889999999974 899999999
Q ss_pred hccCCCEEEEEcCCCCCccccc-cccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCC--C-----------c
Q 024297 172 LRPFGVKIIATKRSWASHSQVS-CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL--N-----------K 237 (269)
Q Consensus 172 l~~~G~~V~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~--t-----------~ 237 (269)
+..+|++|.++.+..-...... ..-..++-..| .......+++++++++|||..-.=. . .
T Consensus 176 ~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g------~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~ 249 (332)
T PRK04284 176 AAIMGMDFHLVCPKELNPDDELLNKCKEIAAETG------GKITITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEERIKL 249 (332)
T ss_pred HHHcCCEEEEECCccccCCHHHHHHHHHHHHHcC------CeEEEEcCHHHHhCCCCEEEECCcccCccchhhHHHHHHh
Confidence 9999999999987432211000 00000000001 0011247899999999999985210 0 0
Q ss_pred cccCcCCHHHHhhhCC-CCcEEEEcc
Q 024297 238 QTVKLCSSSLSSKSMF-FATYVVFMF 262 (269)
Q Consensus 238 ~t~~li~~~~l~~~mk-~ga~lIN~~ 262 (269)
-...-++++.++ .++ ++++|.-+.
T Consensus 250 ~~~y~v~~e~l~-~a~~~~~ivmHpl 274 (332)
T PRK04284 250 LKPYQVNKEMMK-KTGNPNAIFEHCL 274 (332)
T ss_pred ccCCcCCHHHHh-hcCCCCcEEECCC
Confidence 124567899999 886 588887654
No 230
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=97.07 E-value=0.00065 Score=59.91 Aligned_cols=107 Identities=16% Similarity=0.217 Sum_probs=64.6
Q ss_pred CCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhh---------------hc--
Q 024297 141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALA---------------VK-- 202 (269)
Q Consensus 141 ~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~---------------~~-- 202 (269)
..|.......|..++|+|+|.|.+|..+++.|...|. +++.+|...-.. .....+.-+. +.
T Consensus 20 ~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~-sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~l 98 (245)
T PRK05690 20 RGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSL-SNLQRQVLHDDATIGQPKVESARAALARI 98 (245)
T ss_pred hhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECc-chhhhhhcCChhhCCChHHHHHHHHHHHH
Confidence 3465545578999999999999999999999999998 788888543221 0000000000 00
Q ss_pred c-ccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297 203 N-GIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS 249 (269)
Q Consensus 203 ~-~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~ 249 (269)
| +.--..........++.++++++|+|+.++- +.+++..+++...+
T Consensus 99 np~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~ 145 (245)
T PRK05690 99 NPHIAIETINARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFA 145 (245)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHH
Confidence 0 0000000001112346678999999999975 66777777775444
No 231
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.04 E-value=0.00054 Score=64.09 Aligned_cols=95 Identities=16% Similarity=0.248 Sum_probs=55.5
Q ss_pred EEEEecCchHHHHHHHhccCC-C-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297 156 VFILGFGNIGVELAKRLRPFG-V-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233 (269)
Q Consensus 156 vgIiG~G~iG~~~a~~l~~~G-~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l 233 (269)
|+|+|.|.+|+.+++.|...+ . +|++.+|+..+....... .....+....-......+|.++++++|+|++|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEK-----LLGDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhh-----ccccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 689999999999999999775 5 899999987652111100 000000111111113345889999999999999
Q ss_pred CCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297 234 SLNKQTVKLCSSSLSSKSMFFATYVVFM 261 (269)
Q Consensus 234 p~t~~t~~li~~~~l~~~mk~ga~lIN~ 261 (269)
|.. .+...++..++.|.-.|++
T Consensus 76 gp~------~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 76 GPF------FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp SGG------GHHHHHHHHHHHT-EEEES
T ss_pred ccc------hhHHHHHHHHHhCCCeecc
Confidence 733 3344444345566666664
No 232
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=97.01 E-value=0.00031 Score=61.14 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=63.9
Q ss_pred CCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccc--------------
Q 024297 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGII-------------- 206 (269)
Q Consensus 142 ~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 206 (269)
.|.......|.+++|.|+|.|.+|..+|+.|...|. +++.+|...-.. .....+ +.+...++
T Consensus 10 ~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~-sNL~Rq--~l~~~~diG~~Ka~~~~~~l~~ 86 (228)
T cd00757 10 EIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVEL-SNLQRQ--ILHTEADVGQPKAEAAAERLRA 86 (228)
T ss_pred hcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcC-cccccc--cccChhhCCChHHHHHHHHHHH
Confidence 355444567999999999999999999999999999 788887543211 000000 00000000
Q ss_pred --c----ccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297 207 --D----DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS 249 (269)
Q Consensus 207 --~----~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~ 249 (269)
+ .........+++.++++++|+|+.++. +++++..+++...+
T Consensus 87 ~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~ 134 (228)
T cd00757 87 INPDVEIEAYNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK 134 (228)
T ss_pred hCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence 0 000000112456788999999999987 66777777764433
No 233
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.99 E-value=0.0013 Score=59.15 Aligned_cols=97 Identities=21% Similarity=0.253 Sum_probs=65.5
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccC------CCCCHHH
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG------CHEDIFE 221 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~e 221 (269)
....|+++.|+|.|..+++++..|+..|+ +|++++|+.++..... +.+...+ ...+++.
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La--------------~~~~~~~~~~~~~~~~~~~~ 187 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELA--------------DLFGELGAAVEAAALADLEG 187 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH--------------HHhhhccccccccccccccc
Confidence 45679999999999999999999999996 7999999876632111 1111111 1122222
Q ss_pred HHhhCCEEEEecCCCcccc---CcCCHHHHhhhCCCCcEEEEccCC
Q 024297 222 FASKADVVVCCLSLNKQTV---KLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 222 ll~~aDvvv~~lp~t~~t~---~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
+.++|+||++.|.--.-. .+++ .+ .++++.++.++--.
T Consensus 188 -~~~~dliINaTp~Gm~~~~~~~~~~---~~-~l~~~~~v~D~vY~ 228 (283)
T COG0169 188 -LEEADLLINATPVGMAGPEGDSPVP---AE-LLPKGAIVYDVVYN 228 (283)
T ss_pred -ccccCEEEECCCCCCCCCCCCCCCc---HH-hcCcCCEEEEeccC
Confidence 117999999999764432 1444 45 78888888877544
No 234
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.99 E-value=0.0023 Score=58.64 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=54.4
Q ss_pred CEEEEEecCchHHHHHHHhccC-CCEEEE-EcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~ 231 (269)
-+|||||+|+||+.+++.+... ++++.+ ++++...... .... .....+.++++.+.|+|++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~----------------~~~~-v~~~~d~~e~l~~iDVViI 66 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD----------------TETP-VYAVADDEKHLDDVDVLIL 66 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh----------------hcCC-ccccCCHHHhccCCCEEEE
Confidence 5899999999999999999865 899776 5665322100 0011 1123467777889999999
Q ss_pred ecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297 232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFM 261 (269)
Q Consensus 232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~ 261 (269)
|.|... ++ ..... .|+.|.-+|..
T Consensus 67 ctPs~t---h~--~~~~~-~L~aG~NVV~s 90 (324)
T TIGR01921 67 CMGSAT---DI--PEQAP-YFAQFANTVDS 90 (324)
T ss_pred cCCCcc---CH--HHHHH-HHHcCCCEEEC
Confidence 988432 21 22333 56666655554
No 235
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.98 E-value=0.00062 Score=62.89 Aligned_cols=106 Identities=19% Similarity=0.273 Sum_probs=65.5
Q ss_pred CCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccc-----h------------hhhc-
Q 024297 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSS-----A------------LAVK- 202 (269)
Q Consensus 142 ~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~-----~------------~~~~- 202 (269)
.|.......|..++|.|+|.|.+|..+|+.|...|. +|+.+|...-.. ....... + ..+.
T Consensus 13 ~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~-sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 13 PIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEW-SNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred hcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCH-HHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 355444567999999999999999999999999999 899999753110 0000000 0 0000
Q ss_pred -ccccc-ccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297 203 -NGIID-DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS 249 (269)
Q Consensus 203 -~~~~~-~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~ 249 (269)
|-.+. ..........++.++++++|+|+.+.- +.+++.+++....+
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~ 139 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQK 139 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence 10000 000001123456788999999998876 66788888875544
No 236
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.98 E-value=0.0014 Score=59.60 Aligned_cols=99 Identities=18% Similarity=0.100 Sum_probs=57.9
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhc--cccccccccccCCCCCHHHHHhhCCEEEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK--NGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~ell~~aDvvv~ 231 (269)
++|+|||.|.||..+|..|...|.+|+++.|+.... ... .+..+. +|. ..........+. +.+..+|+|++
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~---~~~-~g~~~~~~~~~--~~~~~~~~~~~~-~~~~~~D~vil 78 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEA---VRE-NGLQVDSVHGD--FHLPPVQAYRSA-EDMPPCDWVLV 78 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHH---HHh-CCeEEEeCCCC--eeecCceEEcch-hhcCCCCEEEE
Confidence 689999999999999999999999999999864221 100 000000 010 000000001222 34678999999
Q ss_pred ecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+++.. ++...+.. ... .+++++.++...
T Consensus 79 avK~~-~~~~~~~~-l~~-~~~~~~~iv~lq 106 (313)
T PRK06249 79 GLKTT-ANALLAPL-IPQ-VAAPDAKVLLLQ 106 (313)
T ss_pred EecCC-ChHhHHHH-Hhh-hcCCCCEEEEec
Confidence 99844 44433222 333 566777777653
No 237
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.95 E-value=0.013 Score=53.41 Aligned_cols=126 Identities=13% Similarity=-0.035 Sum_probs=85.2
Q ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHHHHhccC
Q 024297 99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELAKRLRPF 175 (269)
Q Consensus 99 gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a~~l~~~ 175 (269)
.++|.|..... +..++ .+|+-++.+...+ ..+.|.+|+++|= +++.+.++..+..+
T Consensus 124 ~vPvINag~g~--~~HPt--QaLaDl~Ti~e~~-----------------g~l~g~~va~vGD~~~~rv~~Sl~~~~a~~ 182 (310)
T PRK13814 124 SGVVINAGDGN--HQHPS--QALIDLMTIKQHK-----------------PHWNKLCVTIIGDIRHSRVANSLMDGLVTM 182 (310)
T ss_pred CCCeEECCcCC--CCCch--HHHHHHHHHHHHh-----------------CCcCCcEEEEECCCCCCcHHHHHHHHHHHc
Confidence 69999984321 34555 5555666555432 2378999999997 69999999999999
Q ss_pred CC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCC----c-c----c--cCcC
Q 024297 176 GV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN----K-Q----T--VKLC 243 (269)
Q Consensus 176 G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t----~-~----t--~~li 243 (269)
|+ +|.++.+..-.. +. ..........+++++++.+|||...-=-. . . . ...+
T Consensus 183 g~~~v~~~~P~~~~p-------------~~---~~~~~~~~~~d~~ea~~~aDvvy~~~~~~er~~~~~~~~~~~~~y~v 246 (310)
T PRK13814 183 GVPEIRLVGPSSLLP-------------DK---VGNDSIKKFTELKPSLLNSDVIVTLRLQKERHDNSVDIDAFRGSFRL 246 (310)
T ss_pred CCCEEEEeCCcccCc-------------Cc---cccceEEEEcCHHHHhCCCCEEEECccccccccchhHHHHhCCCccc
Confidence 99 999998643210 00 00011113478999999999998732111 0 1 1 2677
Q ss_pred CHHHHhhhCCCCcEEEEcc
Q 024297 244 SSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 244 ~~~~l~~~mk~ga~lIN~~ 262 (269)
+.+.++ .+|++++|.-+.
T Consensus 247 ~~~~l~-~a~~~~i~mHcL 264 (310)
T PRK13814 247 TPEKLY-SAKPDAIVMHPG 264 (310)
T ss_pred CHHHHH-hcCCCCEEECCC
Confidence 899999 899999988765
No 238
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.95 E-value=0.0022 Score=50.02 Aligned_cols=96 Identities=20% Similarity=0.182 Sum_probs=54.9
Q ss_pred EEEEEe-cCchHHHHHHHhccC-CCEEEEE-cCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297 155 TVFILG-FGNIGVELAKRLRPF-GVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (269)
Q Consensus 155 ~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~ 231 (269)
+++|+| .|.+|+.+++.+... ++++.++ +++........ ..++.+...........+++ ..++|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~DvV~~ 71 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVS-------EAGPHLKGEVVLELEPEDFE--ELAVDIVFL 71 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHH-------HHCcccccccccccccCChh--hcCCCEEEE
Confidence 589999 599999999999875 8887777 43221111100 00100000000011123333 258999999
Q ss_pred ecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
++|.. .+...+.. ... .+++|.++|+++
T Consensus 72 ~~~~~-~~~~~~~~-~~~-~~~~g~~viD~s 99 (122)
T smart00859 72 ALPHG-VSKEIAPL-LPK-AAEAGVKVIDLS 99 (122)
T ss_pred cCCcH-HHHHHHHH-HHh-hhcCCCEEEECC
Confidence 99954 33332221 234 679999999987
No 239
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=96.94 E-value=0.0074 Score=55.66 Aligned_cols=142 Identities=17% Similarity=0.060 Sum_probs=89.1
Q ss_pred hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--chHHHHHHH
Q 024297 94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAKR 171 (269)
Q Consensus 94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--~iG~~~a~~ 171 (269)
.+...+|+|.|.-+. ...++ .+|+-++.+.+.+ .+..+.|.+|+++|-+ ++.+.++..
T Consensus 117 ~a~~~~vPVINa~~~---~~HPt--QaLaDl~Ti~e~~---------------g~~~l~g~~ia~vGD~~~~v~~Sl~~~ 176 (336)
T PRK03515 117 LAEYAGVPVWNGLTN---EFHPT--QLLADLLTMQEHL---------------PGKAFNEMTLAYAGDARNNMGNSLLEA 176 (336)
T ss_pred HHHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHh---------------CCCCcCCCEEEEeCCCcCcHHHHHHHH
Confidence 345568999998553 45666 5666666665432 1135889999999975 789999999
Q ss_pred hccCCCEEEEEcCCCCCcccccc-ccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCC-------------Cc
Q 024297 172 LRPFGVKIIATKRSWASHSQVSC-QSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL-------------NK 237 (269)
Q Consensus 172 l~~~G~~V~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~-------------t~ 237 (269)
+..+|++|.++.+..-....... .-..++-.+|. ......+++++++++|||....=. ..
T Consensus 177 ~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~------~i~~~~d~~ea~~~aDvvytd~W~sm~~~~~~~~er~~~ 250 (336)
T PRK03515 177 AALTGLDLRLVAPKACWPEAALVTECRALAQKNGG------NITLTEDIAEGVKGADFIYTDVWVSMGEPKEVWAERIAL 250 (336)
T ss_pred HHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCC------eEEEEcCHHHHhCCCCEEEecCcccCcchhHHHHHHHHh
Confidence 99999999999874322110000 00000000110 011247899999999999985200 11
Q ss_pred cccCcCCHHHHhhh-CCCCcEEEEcc
Q 024297 238 QTVKLCSSSLSSKS-MFFATYVVFMF 262 (269)
Q Consensus 238 ~t~~li~~~~l~~~-mk~ga~lIN~~ 262 (269)
....-++++.++ . .|++++|.-+.
T Consensus 251 ~~~y~v~~~lm~-~a~k~~~ivmHcL 275 (336)
T PRK03515 251 LRPYQVNSKMMQ-LTGNPQVKFLHCL 275 (336)
T ss_pred ccCCccCHHHHh-cccCCCCEEECCC
Confidence 124567888888 6 47889887664
No 240
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.93 E-value=0.0019 Score=59.13 Aligned_cols=75 Identities=17% Similarity=0.095 Sum_probs=48.4
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhcccccccccc---ccCCCCCHHHHHhhC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD---EKGCHEDIFEFASKA 226 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~ell~~a 226 (269)
...++|+|||.|.+|..++..+...| .+|..+|++.+...... .+.. +. ..... ......+.+ .++.|
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~---lDl~--~~--~~~~~~~~~i~~~~d~~-~l~~A 74 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKA---LDLK--HF--STLVGSNINILGTNNYE-DIKDS 74 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHH---HHHh--hh--ccccCCCeEEEeCCCHH-HhCCC
Confidence 35679999999999999999988777 69999998764421100 0000 00 00000 000124666 77999
Q ss_pred CEEEEec
Q 024297 227 DVVVCCL 233 (269)
Q Consensus 227 Dvvv~~l 233 (269)
|+|+++.
T Consensus 75 DiVVita 81 (319)
T PTZ00117 75 DVVVITA 81 (319)
T ss_pred CEEEECC
Confidence 9999998
No 241
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=96.93 E-value=0.017 Score=53.33 Aligned_cols=142 Identities=15% Similarity=0.062 Sum_probs=89.5
Q ss_pred hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--chHHHHHHH
Q 024297 94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAKR 171 (269)
Q Consensus 94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--~iG~~~a~~ 171 (269)
.+...+|+|.|.-+. +..++ .+|+-++.+.+.+ .+..+.|.+|+++|-+ ++.+.++..
T Consensus 117 ~a~~~~vPVINa~~~---~~HPt--QaLaDl~Ti~e~~---------------g~~~l~gl~va~vGD~~~~v~~S~~~~ 176 (334)
T PRK12562 117 LAEYAGVPVWNGLTN---EFHPT--QLLADLLTMQEHL---------------PGKAFNEMTLVYAGDARNNMGNSMLEA 176 (334)
T ss_pred HHHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHh---------------CCCCcCCcEEEEECCCCCCHHHHHHHH
Confidence 345568999998654 45666 5666666665432 1135889999999975 799999999
Q ss_pred hccCCCEEEEEcCCCCCccccc-cccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec------CCC-------c
Q 024297 172 LRPFGVKIIATKRSWASHSQVS-CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL------SLN-------K 237 (269)
Q Consensus 172 l~~~G~~V~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l------p~t-------~ 237 (269)
+..+|++|.++.+..-...... .....++..+|. ......+++++++++|||.... ... .
T Consensus 177 ~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~------~~~~~~d~~~a~~~aDvvyt~~w~sm~~~~~~~~~~~~~ 250 (334)
T PRK12562 177 AALTGLDLRLVAPQACWPEASLVAECSALAQKHGG------KITLTEDIAAGVKGADFIYTDVWVSMGEPKEKWAERIAL 250 (334)
T ss_pred HHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCC------eEEEEcCHHHHhCCCCEEEEcCccccccchhhHHHHHHh
Confidence 9999999999986432211000 000000000110 0112478999999999999864 100 0
Q ss_pred cccCcCCHHHHhhhC-CCCcEEEEcc
Q 024297 238 QTVKLCSSSLSSKSM-FFATYVVFMF 262 (269)
Q Consensus 238 ~t~~li~~~~l~~~m-k~ga~lIN~~ 262 (269)
--..-++++.++ .. +++++|.-+.
T Consensus 251 ~~~y~v~~ell~-~a~~~~~i~mHcL 275 (334)
T PRK12562 251 LRGYQVNSKMMA-LTGNPQVKFLHCL 275 (334)
T ss_pred ccCCcCCHHHHH-hhcCCCCEEECCC
Confidence 124567888898 74 7899887664
No 242
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.92 E-value=0.0025 Score=59.04 Aligned_cols=95 Identities=11% Similarity=0.049 Sum_probs=62.3
Q ss_pred CCEEEEEecCchHHHHHHHhc-cCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297 153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv 230 (269)
-++++|||.|..++..++.+. -+.. +|.+|+|+..+...-... . ....-.....++.++++++||+|+
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~-----~-----~~~~~~v~~~~~~~~av~~ADIIv 198 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARN-----L-----AGPGLRIVACRSVAEAVEGADIIT 198 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHH-----H-----HhcCCcEEEeCCHHHHHhcCCEEE
Confidence 468999999999988887665 3555 699999987652111000 0 000000002368999999999999
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
.+.|.+ +...++..+ .+|+|+.+.-+|
T Consensus 199 taT~S~-~~~Pvl~~~----~lkpG~hV~aIG 225 (346)
T PRK07589 199 TVTADK-TNATILTDD----MVEPGMHINAVG 225 (346)
T ss_pred EecCCC-CCCceecHH----HcCCCcEEEecC
Confidence 997632 223667663 578999887766
No 243
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.91 E-value=0.0015 Score=60.88 Aligned_cols=68 Identities=26% Similarity=0.325 Sum_probs=47.1
Q ss_pred CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~ 231 (269)
.++|||||.|..|+.+++.++.+|++|+++|+++....... . + ......+.+.+.+.++++.+|+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~---a-----d---~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQV---A-----D---EVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHh---C-----c---eEEecCCCCHHHHHHHHhcCCEEEe
Confidence 37899999999999999999999999999998654421100 0 0 0011112233468888899998754
No 244
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=96.90 E-value=0.00066 Score=61.67 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=69.6
Q ss_pred CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccc---cccccchhhhcccccccc-----ccccCCCCCHHHHHh
Q 024297 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ---VSCQSSALAVKNGIIDDL-----VDEKGCHEDIFEFAS 224 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~ell~ 224 (269)
-++|+|||.|.||+.+|..+..-|++|..+|++...... .........+..|.+.+. ........++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 379999999999999999999977999999998432110 000001111222221111 11111223444 789
Q ss_pred hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
+||+|+=++|-+.+.++-+-++.=. ..+|+++|-..-++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~-~~~~~aIlASNTSs 120 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEA-LAKPDAILASNTSS 120 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHh-hcCCCcEEeeccCC
Confidence 9999999999887776655554444 78899988654443
No 245
>PRK12861 malic enzyme; Reviewed
Probab=96.89 E-value=0.0093 Score=60.41 Aligned_cols=131 Identities=15% Similarity=0.084 Sum_probs=92.8
Q ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-
Q 024297 99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV- 177 (269)
Q Consensus 99 gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~- 177 (269)
.|++.|. +- ..+|=-+++.+++.+|- .++.+.+.+|.|.|.|.-|-.+++.+...|.
T Consensus 157 ~ipvf~D-D~-----qGTa~v~lA~llnal~~----------------~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~ 214 (764)
T PRK12861 157 KIPVFHD-DQ-----HGTAITVSAAFINGLKV----------------VGKSIKEVKVVTSGAGAAALACLDLLVDLGLP 214 (764)
T ss_pred CCCeecc-cc-----chHHHHHHHHHHHHHHH----------------hCCChhHcEEEEECHhHHHHHHHHHHHHcCCC
Confidence 7888886 22 34666888899998885 3688999999999999999999999999998
Q ss_pred --EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCC
Q 024297 178 --KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFA 255 (269)
Q Consensus 178 --~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~g 255 (269)
+|+.+|+..--.......-.++ . ...... ....+|.|+++.+|+++-. . +-+.++++.++ .|.+.
T Consensus 215 ~~~i~~~D~~Gli~~~r~~~l~~~-----k-~~~a~~-~~~~~L~eai~~advliG~-S----~~g~ft~e~v~-~Ma~~ 281 (764)
T PRK12861 215 VENIWVTDIEGVVYRGRTTLMDPD-----K-ERFAQE-TDARTLAEVIGGADVFLGL-S----AGGVLKAEMLK-AMAAR 281 (764)
T ss_pred hhhEEEEcCCCeeeCCCcccCCHH-----H-HHHHhh-cCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHHH-HhccC
Confidence 7999996552111000000000 0 011111 1346899999999988765 2 24899999999 99998
Q ss_pred cEEEEccCC
Q 024297 256 TYVVFMFQG 264 (269)
Q Consensus 256 a~lIN~~RG 264 (269)
.++.=.|..
T Consensus 282 PIIFaLsNP 290 (764)
T PRK12861 282 PLILALANP 290 (764)
T ss_pred CEEEECCCC
Confidence 888766543
No 246
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.89 E-value=0.0015 Score=53.65 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=35.9
Q ss_pred ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 147 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
..-++.|++|.|+|.|.+|...++.|...|++|+++++..
T Consensus 7 ~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 7 LMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred eEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence 3468999999999999999999999999999999997543
No 247
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=96.87 E-value=0.015 Score=53.70 Aligned_cols=138 Identities=12% Similarity=0.077 Sum_probs=86.0
Q ss_pred HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHHHH
Q 024297 95 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELAKR 171 (269)
Q Consensus 95 ~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a~~ 171 (269)
+....|+|.|..+.. +..++ .+|+-++.+..++.. .|..+.|+||+++|= +++.+.++..
T Consensus 118 a~~~~vPVINa~~g~--~~HPt--QaLaDl~Ti~e~~~~-------------~g~~l~g~kia~vGD~~~~rv~~Sl~~~ 180 (338)
T PRK08192 118 AEGSRVPVINGGDGS--NEHPT--QALLDLFTIQKELAH-------------AGRGIDGMHIAMVGDLKFGRTVHSLSRL 180 (338)
T ss_pred HHhCCCCEEECCCCC--CCCcH--HHHHHHHHHHHHhhc-------------cCCCcCCCEEEEECcCCCCchHHHHHHH
Confidence 345679999986521 33555 556666666543211 134689999999997 6889998987
Q ss_pred hcc-CCCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCCEEEEecCCCc-----c---
Q 024297 172 LRP-FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCLSLNK-----Q--- 238 (269)
Q Consensus 172 l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDvvv~~lp~t~-----~--- 238 (269)
+.. +|++|.++.+..-...... .+.....+ ...+++++++++|||....--.+ +
T Consensus 181 l~~~~g~~v~~~~P~~~~~~~~~-------------~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~~~ 247 (338)
T PRK08192 181 LCMYKNVSFTLVSPKELAMPDYV-------------ISDIENAGHKITITDQLEGNLDKADILYLTRIQEERFPSQEEAN 247 (338)
T ss_pred HHHhcCCEEEEECCccccCCHHH-------------HHHHHHcCCeEEEEcCHHHHHccCCEEEEcCcccccccchHHHH
Confidence 664 5999999987532111000 00011111 24789999999999998521100 0
Q ss_pred ---ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 239 ---TVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 239 ---t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
-...++.+.++..+|++++|.-+.
T Consensus 248 ~~~~~y~v~~e~l~~~a~~~ai~mHcL 274 (338)
T PRK08192 248 KYRGKFRLNQSIYTQHCKSNTVIMHPL 274 (338)
T ss_pred HhhhccccCHHHHHhhhCCCCEEECCC
Confidence 125678888841589999887664
No 248
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.87 E-value=0.0011 Score=54.90 Aligned_cols=72 Identities=19% Similarity=0.202 Sum_probs=51.7
Q ss_pred EEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecC
Q 024297 156 VFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS 234 (269)
Q Consensus 156 vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp 234 (269)
|.|+|. |.+|+.+++.|...|.+|+++.|++.+... +..+.-...+....+++.+.++.+|+|+.+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----------ccccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence 679995 999999999999999999999998765211 00011111222244567888999999999998
Q ss_pred CCcc
Q 024297 235 LNKQ 238 (269)
Q Consensus 235 ~t~~ 238 (269)
.+..
T Consensus 70 ~~~~ 73 (183)
T PF13460_consen 70 PPPK 73 (183)
T ss_dssp STTT
T ss_pred hhcc
Confidence 6544
No 249
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.87 E-value=0.0017 Score=57.19 Aligned_cols=35 Identities=43% Similarity=0.722 Sum_probs=32.5
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEc
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~ 183 (269)
.++.|+++.|-|||++|+.+|+.|...|++|+++.
T Consensus 28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vs 62 (244)
T PF00208_consen 28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVS 62 (244)
T ss_dssp HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence 46999999999999999999999999999988873
No 250
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.85 E-value=0.013 Score=59.36 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=93.0
Q ss_pred CCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC
Q 024297 98 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV 177 (269)
Q Consensus 98 ~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~ 177 (269)
..|++.|. +- ..+|--+++.+++.+|-. ++.+.+.+|.|.|.|.-|-.++++|...|.
T Consensus 152 ~~ip~f~D-D~-----~GTa~v~lA~l~na~~~~----------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~ 209 (752)
T PRK07232 152 MDIPVFHD-DQ-----HGTAIISAAALLNALELV----------------GKKIEDVKIVVSGAGAAAIACLNLLVALGA 209 (752)
T ss_pred cCCCeecc-cc-----chHHHHHHHHHHHHHHHh----------------CCChhhcEEEEECccHHHHHHHHHHHHcCC
Confidence 36888876 22 346668888899888853 688999999999999999999999999998
Q ss_pred ---EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCC
Q 024297 178 ---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFF 254 (269)
Q Consensus 178 ---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ 254 (269)
+|+.+|+..--....... ..... ...... ....+|.++++.+|+++-.- +.+.++++.++ .|.+
T Consensus 210 ~~~~i~~~D~~G~i~~~r~~~-----~~~~k-~~~a~~-~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~~v~-~M~~ 276 (752)
T PRK07232 210 KKENIIVCDSKGVIYKGRTEG-----MDEWK-AAYAVD-TDARTLAEAIEGADVFLGLS-----AAGVLTPEMVK-SMAD 276 (752)
T ss_pred CcccEEEEcCCCeecCCCccc-----ccHHH-HHHhcc-CCCCCHHHHHcCCCEEEEcC-----CCCCCCHHHHH-Hhcc
Confidence 799999764321100000 00000 011111 23468999999999887652 24899999999 9999
Q ss_pred CcEEEEccCC
Q 024297 255 ATYVVFMFQG 264 (269)
Q Consensus 255 ga~lIN~~RG 264 (269)
..++.=.+..
T Consensus 277 ~piifalsNP 286 (752)
T PRK07232 277 NPIIFALANP 286 (752)
T ss_pred CCEEEecCCC
Confidence 9888766643
No 251
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.83 E-value=0.0021 Score=61.61 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=34.5
Q ss_pred cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
.+.+++|+|+|+|..|+++|+.|+..|++|.++|++..
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 46688999999999999999999999999999997653
No 252
>PRK12862 malic enzyme; Reviewed
Probab=96.83 E-value=0.012 Score=59.74 Aligned_cols=131 Identities=14% Similarity=0.068 Sum_probs=92.9
Q ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-
Q 024297 99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV- 177 (269)
Q Consensus 99 gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~- 177 (269)
+|++.|. +- ..+|=-+++.+++.+|-. ++.+.+.+|.|.|.|.-|-.+|+++...|.
T Consensus 161 ~ip~f~D-D~-----~GTa~v~la~l~~a~~~~----------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 218 (763)
T PRK12862 161 KIPVFHD-DQ-----HGTAIIVAAALLNGLKLV----------------GKDIEDVKLVASGAGAAALACLDLLVSLGVK 218 (763)
T ss_pred CCceEec-Cc-----ccHHHHHHHHHHHHHHHh----------------CCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence 5888886 22 346668888889888853 688999999999999999999999999998
Q ss_pred --EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCC
Q 024297 178 --KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFA 255 (269)
Q Consensus 178 --~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~g 255 (269)
+|+.+|+..--.....+. ..... ....... ...+|.|+++.+|+++-.- +-+.++++.++ .|.+.
T Consensus 219 ~~~i~~~D~~G~i~~~r~~~-----l~~~~-~~~a~~~-~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~-~M~~~ 285 (763)
T PRK12862 219 RENIWVTDIKGVVYEGRTEL-----MDPWK-ARYAQKT-DARTLAEVIEGADVFLGLS-----AAGVLKPEMVK-KMAPR 285 (763)
T ss_pred cccEEEEcCCCeeeCCCCcc-----ccHHH-HHHhhhc-ccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHH-HhccC
Confidence 799999754211100000 00000 0111111 3368999999999888753 24899999999 99999
Q ss_pred cEEEEccCC
Q 024297 256 TYVVFMFQG 264 (269)
Q Consensus 256 a~lIN~~RG 264 (269)
.++.=.+..
T Consensus 286 piifalsNP 294 (763)
T PRK12862 286 PLIFALANP 294 (763)
T ss_pred CEEEeCCCC
Confidence 988766643
No 253
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.82 E-value=0.0063 Score=50.05 Aligned_cols=104 Identities=19% Similarity=0.149 Sum_probs=67.2
Q ss_pred cCCEEEEEe--cCchHHHHHHHhccCCCEEEEEcCCCCCccc---cccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 152 LGKTVFILG--FGNIGVELAKRLRPFGVKIIATKRSWASHSQ---VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 152 ~g~~vgIiG--~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
.|+||+++| .+++.+.++..+..||++|.++.+..-.... ...........+| ....-..++++.++++
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g------~~i~~~~~~~e~l~~a 74 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG------GKITITDDIEEALKGA 74 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT------TEEEEESSHHHHHTT-
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC------CCeEEEeCHHHhcCCC
Confidence 478999999 4899999999999999999999875421100 0000000000011 0011237899999999
Q ss_pred CEEEEecCCC---cc--------ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLN---KQ--------TVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t---~~--------t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|||....--. .+ ....++++.++ .+|++++|.-+.
T Consensus 75 Dvvy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~-~a~~~~i~mH~L 120 (158)
T PF00185_consen 75 DVVYTDRWQSMGDKERFKRLEKFKPYQVTEELME-RAKPDAIFMHPL 120 (158)
T ss_dssp SEEEEESSSCTTSGGHHHHHHHHGGGSBSHHHHH-TSSTT-EEEESS
T ss_pred CEEEEcCcccccchHHHHHHHHhcCCccCHHHHH-hcCCCcEEEeCC
Confidence 9998875431 11 12678999999 899999998775
No 254
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=96.82 E-value=0.015 Score=54.09 Aligned_cols=139 Identities=13% Similarity=0.019 Sum_probs=85.1
Q ss_pred CCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--------chHHHHH
Q 024297 98 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--------NIGVELA 169 (269)
Q Consensus 98 ~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--------~iG~~~a 169 (269)
..|+|.|..+. ...++ .+|+-++.+..++ | . -..+.|+||+|+|.| ++.+.++
T Consensus 134 s~vPVINa~~~---~~HPt--QaLaDl~Ti~e~~---------G---~--~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~ 194 (357)
T TIGR03316 134 QRPPLVNLQCD---IDHPT--QAMADIMTLQEKF---------G---G--IENLKGKKFAMTWAYSPSYGKPLSVPQGII 194 (357)
T ss_pred CCCCEEECCCC---CCCch--HHHHHHHHHHHHh---------C---C--ccccCCCEEEEEeccccccCccchHHHHHH
Confidence 46999999764 44566 5666666665432 1 0 124789999999853 4557888
Q ss_pred HHhccCCCEEEEEcCCCCCcccccccc-chhhhccccccccccccCCCCCHHHHHhhCCEEEEec----C----------
Q 024297 170 KRLRPFGVKIIATKRSWASHSQVSCQS-SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL----S---------- 234 (269)
Q Consensus 170 ~~l~~~G~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l----p---------- 234 (269)
..+..||++|.++.+..-......... ..++-.+|. ......+++++++++|||.... .
T Consensus 195 ~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~------~~~~~~d~~ea~~~aDvvyt~~w~s~~~~~~~~~~~~ 268 (357)
T TIGR03316 195 GLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGG------KFNIVNSMDEAFKDADIVYPKSWAPIAAMEKRTELYT 268 (357)
T ss_pred HHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCC------eEEEEcCHHHHhCCCCEEEECCeeccccccccchhcc
Confidence 889999999999987532111100000 000000110 0112478999999999999873 1
Q ss_pred CC-----------------ccccCcCCHHHHhhhCC-CCcEEEEcc
Q 024297 235 LN-----------------KQTVKLCSSSLSSKSMF-FATYVVFMF 262 (269)
Q Consensus 235 ~t-----------------~~t~~li~~~~l~~~mk-~ga~lIN~~ 262 (269)
.. .-....++++.++ .++ ++++|.-+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~-~a~~~~~i~MHcL 313 (357)
T TIGR03316 269 GSDTEGAELLEQELLSQNKKHKDWVCTEERMA-LTHDGEALYMHCL 313 (357)
T ss_pred cchhhhhhhhhccchhHHHHhcCCeECHHHHH-hcCCCCcEEECCC
Confidence 00 0023457999999 888 888887664
No 255
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.82 E-value=0.0011 Score=51.09 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=45.1
Q ss_pred EEEEEecCchHHHHHHHhccC--CCEEE-EEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHh--hCC
Q 024297 155 TVFILGFGNIGVELAKRLRPF--GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KAD 227 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~--G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~aD 227 (269)
+|||||+|.+|+.....+... +.+|. ++|+++.+.. ......+ .+.+++++++ +.|
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~-----------------~~~~~~~~~~~~~~~~ll~~~~~D 64 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAE-----------------AFAEKYGIPVYTDLEELLADEDVD 64 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHH-----------------HHHHHTTSEEESSHHHHHHHTTES
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHH-----------------HHHHHhcccchhHHHHHHHhhcCC
Confidence 799999999999999877755 66765 5666543311 0111111 4578999998 789
Q ss_pred EEEEecCC
Q 024297 228 VVVCCLSL 235 (269)
Q Consensus 228 vvv~~lp~ 235 (269)
+|+++.|.
T Consensus 65 ~V~I~tp~ 72 (120)
T PF01408_consen 65 AVIIATPP 72 (120)
T ss_dssp EEEEESSG
T ss_pred EEEEecCC
Confidence 99999884
No 256
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.82 E-value=0.015 Score=52.18 Aligned_cols=121 Identities=16% Similarity=0.195 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccC----CC-------EEEEEcC
Q 024297 116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR 184 (269)
Q Consensus 116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~~~~~ 184 (269)
+|--+++.+|+.+|- .++.|.+.+|.|+|.|.-|-.+|+++... |. +++.+|+
T Consensus 4 Ta~V~lAgllnAlk~----------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~ 67 (279)
T cd05312 4 TAAVALAGLLAALRI----------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDS 67 (279)
T ss_pred HHHHHHHHHHHHHHH----------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcC
Confidence 455788888888885 36789999999999999999999999876 87 7999998
Q ss_pred CCCCccccccccchhhhccccccccccccC--CCCCHHHHHh--hCCEEEEecCCCccccCcCCHHHHhhhCC---CCcE
Q 024297 185 SWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KADVVVCCLSLNKQTVKLCSSSLSSKSMF---FATY 257 (269)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~aDvvv~~lp~t~~t~~li~~~~l~~~mk---~ga~ 257 (269)
..--.....+. .++- ........ ...+|.|+++ ++|+++-+- ..-++|+++.++ .|. +..+
T Consensus 68 ~Gll~~~r~~l-~~~~------~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~-~Ma~~~~~PI 135 (279)
T cd05312 68 KGLLTKDRKDL-TPFK------KPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVR-AMAKSNERPI 135 (279)
T ss_pred CCeEeCCCCcc-hHHH------HHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHH-HHHhcCCCCE
Confidence 64321110000 0000 01111111 3368999999 889988763 123899999999 998 7788
Q ss_pred EEEccCC
Q 024297 258 VVFMFQG 264 (269)
Q Consensus 258 lIN~~RG 264 (269)
+.=.|..
T Consensus 136 IFaLSNP 142 (279)
T cd05312 136 IFALSNP 142 (279)
T ss_pred EEECCCc
Confidence 7766654
No 257
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.77 E-value=0.0031 Score=49.26 Aligned_cols=93 Identities=26% Similarity=0.229 Sum_probs=52.5
Q ss_pred EEEEEe-cCchHHHHHHHhcc-CCCEEEE-EcCCCCCccccccccchhhhc--cccccccccccCCCCCHHHHHhhCCEE
Q 024297 155 TVFILG-FGNIGVELAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVK--NGIIDDLVDEKGCHEDIFEFASKADVV 229 (269)
Q Consensus 155 ~vgIiG-~G~iG~~~a~~l~~-~G~~V~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~ell~~aDvv 229 (269)
+|+|+| .|.+|+.++++|.. ..+++.. +.++...... . ...++ .+...-.. ...+. +.+.++|+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~-~----~~~~~~~~~~~~~~~----~~~~~-~~~~~~Dvv 70 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKP-L----SEVFPHPKGFEDLSV----EDADP-EELSDVDVV 70 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSB-H----HHTTGGGTTTEEEBE----EETSG-HHHTTESEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCe-e----ehhccccccccceeE----eecch-hHhhcCCEE
Confidence 699999 99999999999996 4667554 4443312111 1 11111 11000001 11233 445999999
Q ss_pred EEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
++|+|... .++...+.+++|..+|+.+-
T Consensus 71 f~a~~~~~------~~~~~~~~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 71 FLALPHGA------SKELAPKLLKAGIKVIDLSG 98 (121)
T ss_dssp EE-SCHHH------HHHHHHHHHHTTSEEEESSS
T ss_pred EecCchhH------HHHHHHHHhhCCcEEEeCCH
Confidence 99988331 23343424578899998873
No 258
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.76 E-value=0.0064 Score=57.97 Aligned_cols=35 Identities=37% Similarity=0.613 Sum_probs=32.7
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCCEEEEE
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~ 182 (269)
+.++.|+||.|=|+|++|+.+|+.|..+|++|+++
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVav 257 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTI 257 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 45799999999999999999999999999999993
No 259
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.76 E-value=0.0095 Score=56.82 Aligned_cols=36 Identities=31% Similarity=0.542 Sum_probs=33.1
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEc
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~ 183 (269)
+.++.|+||.|=|+|++|+.+|+.|..+|++|++++
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavS 267 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMS 267 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 467999999999999999999999999999999554
No 260
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0073 Score=54.52 Aligned_cols=151 Identities=13% Similarity=0.080 Sum_probs=91.7
Q ss_pred CCceEEEEccccCCccchhhHhcCCc-EEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccC
Q 024297 75 NQMKLIMQFGVGLEGVDINAATRCGI-KVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG 153 (269)
Q Consensus 75 ~~Lk~I~~~~aG~d~id~~~~~~~gI-~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g 153 (269)
.+.=+|=....|+-++ ++...++ +|.|..+.+ +..++ .++.-++...+.+ ..+.|
T Consensus 103 ~D~iViRH~~egaa~~---~a~~~~~~pvINaGDG~--~qHPT--Q~LLDl~TI~~~~-----------------G~~~g 158 (316)
T COG0540 103 VDAIVIRHPEEGAARL---LAEFSGVNPVINAGDGS--HQHPT--QALLDLYTIREEF-----------------GRLDG 158 (316)
T ss_pred CCEEEEeCccccHHHH---HHHhcCCCceEECCCCC--CCCcc--HHHHHHHHHHHHh-----------------CCcCC
Confidence 4444444444444433 3344466 799998754 44555 5666666666654 33999
Q ss_pred CEEEEEe---cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccc--cC-CCCCHHHHHhhCC
Q 024297 154 KTVFILG---FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KG-CHEDIFEFASKAD 227 (269)
Q Consensus 154 ~~vgIiG---~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~l~ell~~aD 227 (269)
.+|+|+| +|++.+..++.|..||++|..+.+..-.. |.++.++.... .. ..+..++.++++|
T Consensus 159 l~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~------------p~~i~~~l~~~~~~~~~~~~~e~~i~~~D 226 (316)
T COG0540 159 LKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLP------------PEYILEELEEKGGVVVEHDSDEEVIEEAD 226 (316)
T ss_pred cEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCC------------chhHHHHHhhcCceEEEecchhhhhccCC
Confidence 9999999 99999999999999999999998643221 11111111111 11 2345666999999
Q ss_pred EEEEec------CCCc--c---ccCcCCHHHHhhh-CCCCcEEEEcc
Q 024297 228 VVVCCL------SLNK--Q---TVKLCSSSLSSKS-MFFATYVVFMF 262 (269)
Q Consensus 228 vvv~~l------p~t~--~---t~~li~~~~l~~~-mk~ga~lIN~~ 262 (269)
||.+.= +... + -.+-+....++ . +|+++++.--+
T Consensus 227 Vl~~lRvQ~ER~~~~~~~s~~~~y~~~~~~~~~-~~~k~~~ivmHP~ 272 (316)
T COG0540 227 VLYMLRVQKERFNDPEEYSKVKEYYKLYGLTLE-RLAKPDAIVMHPL 272 (316)
T ss_pred EEEeehhhHhhcCCccchHHHHHHHHHHHHHHH-hhcCCCcEEECCC
Confidence 997761 1111 1 11122233445 5 88888876543
No 261
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.74 E-value=0.0036 Score=56.37 Aligned_cols=104 Identities=17% Similarity=0.110 Sum_probs=62.6
Q ss_pred cccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
++.++++.|+|.|..|++++..|...|+ +|++++|+..+....... +....+. ... ......++.+.+..+|+
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~---~~~~~~~--~~~-~~~~~~~~~~~~~~~di 197 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV---INNAVGR--EAV-VGVDARGIEDVIAAADG 197 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH---HhhccCc--ceE-EecCHhHHHHHHhhcCE
Confidence 4568999999999999999999999998 799999986552211100 0000000 000 00011123456778999
Q ss_pred EEEecCCCcccc--CcCCHHHHhhhCCCCcEEEEccC
Q 024297 229 VVCCLSLNKQTV--KLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 229 vv~~lp~t~~t~--~li~~~~l~~~mk~ga~lIN~~R 263 (269)
||++.|..-... ..++. . .++++.+++++--
T Consensus 198 vINaTp~Gm~~~~~~~~~~---~-~l~~~~~v~D~vY 230 (283)
T PRK14027 198 VVNATPMGMPAHPGTAFDV---S-CLTKDHWVGDVVY 230 (283)
T ss_pred EEEcCCCCCCCCCCCCCCH---H-HcCCCcEEEEccc
Confidence 999998653211 12332 3 4667777777643
No 262
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.71 E-value=0.0011 Score=67.11 Aligned_cols=109 Identities=18% Similarity=0.112 Sum_probs=70.4
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccc---ccccchhhhcccccccc-----ccccCCCCCHHHHHhh
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV---SCQSSALAVKNGIIDDL-----VDEKGCHEDIFEFASK 225 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~ell~~ 225 (269)
++|+|||.|.||..+|..+...|++|+.+|++.+.-... ........+..|.+... ........++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 689999999999999999999999999999876531110 00001111122221110 0111112456 45799
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
||+|+=++|-..+.+.-+-++.=+ .++++++|....-+
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~-~~~~~~ilasNTSs 430 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQ-KVREDTILASNTST 430 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHh-hCCCCcEEEEcCCC
Confidence 999999999887777665554545 78999988765433
No 263
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.68 E-value=0.0017 Score=60.72 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=69.1
Q ss_pred HHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhh------------
Q 024297 134 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALA------------ 200 (269)
Q Consensus 134 ~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~------------ 200 (269)
|.+++.-..|.......|.+++|.|+|.|.+|..+++.|...|. +++.+|...-.. .....+.-|.
T Consensus 22 y~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~-sNL~RQ~l~~~~diG~~Ka~~~ 100 (370)
T PRK05600 22 TARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDV-SNIHRQILFGASDVGRPKVEVA 100 (370)
T ss_pred hhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEcc-ccccccccCChhHCCCHHHHHH
Confidence 33333334566555678999999999999999999999999998 799998642211 0000000000
Q ss_pred ------hccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297 201 ------VKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS 249 (269)
Q Consensus 201 ------~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~ 249 (269)
..++.--..........++.++++++|+|+.|+- +.+++.++|+...+
T Consensus 101 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~ 154 (370)
T PRK05600 101 AERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEI 154 (370)
T ss_pred HHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 0000000000111122456789999999988876 56788888875444
No 264
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.63 E-value=0.008 Score=54.63 Aligned_cols=76 Identities=18% Similarity=0.112 Sum_probs=46.8
Q ss_pred CEEEEEecCchHHHHHHHhccCC--CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~ 231 (269)
++|+|||.|.+|+.+|..|...| .+|..+|++............+.....+ ........+.+ .+++||+|++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~-----~~~~i~~~~~~-~l~~aDIVIi 74 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLP-----SPVKIKAGDYS-DCKDADIVVI 74 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccC-----CCeEEEcCCHH-HhCCCCEEEE
Confidence 48999999999999999999888 4899999976652111100000000000 00000112343 4789999999
Q ss_pred ecCC
Q 024297 232 CLSL 235 (269)
Q Consensus 232 ~lp~ 235 (269)
+...
T Consensus 75 tag~ 78 (306)
T cd05291 75 TAGA 78 (306)
T ss_pred ccCC
Confidence 9764
No 265
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.61 E-value=0.011 Score=55.84 Aligned_cols=91 Identities=23% Similarity=0.192 Sum_probs=64.6
Q ss_pred ccccCCEEEEEec----------CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCC
Q 024297 149 ETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED 218 (269)
Q Consensus 149 ~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (269)
.++.+++|+|+|+ .+-+..+++.|...|++|.+||+...+.. ........+
T Consensus 309 ~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-------------------~~~~~~~~~ 369 (411)
T TIGR03026 309 GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-------------------VKGLPLIDD 369 (411)
T ss_pred hcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-------------------hhhcccCCC
Confidence 3689999999997 56889999999999999999998654310 011112468
Q ss_pred HHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297 219 IFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM 261 (269)
Q Consensus 219 l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~ 261 (269)
+.+.++.+|+|+++.+.. +.+. ++-+.+...|+ ..++|+.
T Consensus 370 ~~~~~~~ad~~v~~t~~~-~~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 370 LEEALKGADALVILTDHD-EFKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HHHHHhCCCEEEEecCCH-HHhc-cCHHHHHHhcC-CCEEEeC
Confidence 889999999999998744 2233 35555552455 4577764
No 266
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.61 E-value=0.0012 Score=66.88 Aligned_cols=109 Identities=15% Similarity=0.013 Sum_probs=70.0
Q ss_pred CEEEEEecCchHHHHHHHhc-cCCCEEEEEcCCCCCcccc---ccccchhhhcccccccc-----ccccCCCCCHHHHHh
Q 024297 154 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQV---SCQSSALAVKNGIIDDL-----VDEKGCHEDIFEFAS 224 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~ell~ 224 (269)
++|+|||.|.||..+|..+. ..|++|+.+|++.+.-... .....+.....|.+... ........++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 78999999999999999988 7899999999875431110 00001111112211110 0011112455 4679
Q ss_pred hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
.||+|+=++|-+.+.+.-+-++.=+ .++|+++|....-+
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~-~~~~~~ilasnTS~ 427 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQ-NCAPHTIFASNTSS 427 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHh-hCCCCcEEEECCCC
Confidence 9999999999887776655554445 79999998876544
No 267
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.0012 Score=57.37 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=50.4
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCEEEEe
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADVVVCC 232 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDvvv~~ 232 (269)
+++.|+|+|.+|..+|+.|...|++|+.+++.............+. ..........+-|.++ +.++|+++.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~-------~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDT-------HVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcce-------EEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 5789999999999999999999999999998776532211100000 0011111123446666 7799999999
Q ss_pred cCCC
Q 024297 233 LSLN 236 (269)
Q Consensus 233 lp~t 236 (269)
...+
T Consensus 74 t~~d 77 (225)
T COG0569 74 TGND 77 (225)
T ss_pred eCCC
Confidence 7644
No 268
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.60 E-value=0.0044 Score=60.61 Aligned_cols=97 Identities=16% Similarity=0.221 Sum_probs=59.9
Q ss_pred cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH-hhCCE
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKADV 228 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDv 228 (269)
++.+|++.|+|.|.+|++++..|...|++|++++|+.++...... ..........++.+.+ ..+|+
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~-------------~l~~~~~~~~~~~~~~~~~~di 442 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELAD-------------AVGGQALTLADLENFHPEEGMI 442 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-------------HhCCceeeHhHhhhhccccCeE
Confidence 477899999999999999999999999999999987543211000 0000000122233322 35799
Q ss_pred EEEecCCCcc--ccC-cCCHHHHhhhCCCCcEEEEccC
Q 024297 229 VVCCLSLNKQ--TVK-LCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 229 vv~~lp~t~~--t~~-li~~~~l~~~mk~ga~lIN~~R 263 (269)
|+++.|..-. +.. .++. . .+++..+++++.-
T Consensus 443 iINtT~vGm~~~~~~~pl~~---~-~l~~~~~v~D~vY 476 (529)
T PLN02520 443 LANTTSVGMQPNVDETPISK---H-ALKHYSLVFDAVY 476 (529)
T ss_pred EEecccCCCCCCCCCCcccH---h-hCCCCCEEEEecc
Confidence 9988875422 111 2332 3 5667777777643
No 269
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.60 E-value=0.0016 Score=65.98 Aligned_cols=108 Identities=15% Similarity=0.066 Sum_probs=68.9
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccc---cccchhhhccccccc-----cccccCCCCCHHHHHhh
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSSALAVKNGIIDD-----LVDEKGCHEDIFEFASK 225 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~ 225 (269)
++|+|||.|.||..+|..+...|++|+.+|++.+.-.... .......+..|.+.. .........++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5799999999999999999999999999998765311100 000011111121110 00111112455 45799
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
||+|+=++|-..+.+.=+-++.=+ .++++++|-...-
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~-~~~~~~ilasnTS 429 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQ-HVREDAILASNTS 429 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHh-hCCCCcEEEECCC
Confidence 999999999887776655554545 7899998876543
No 270
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.59 E-value=0.0024 Score=59.41 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=65.3
Q ss_pred CCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhh------------------h
Q 024297 141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALA------------------V 201 (269)
Q Consensus 141 ~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~------------------~ 201 (269)
..|.......|.+++|.|+|.|.+|..+++.|...|. +++.+|...-.. .......-|. .
T Consensus 16 ~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~-sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~ 94 (355)
T PRK05597 16 GEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDL-SNLHRQVIHSTAGVGQPKAESAREAMLAL 94 (355)
T ss_pred hhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcc-cccccCcccChhHCCChHHHHHHHHHHHH
Confidence 3466555577999999999999999999999999998 688888643211 0000000000 0
Q ss_pred ccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297 202 KNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS 249 (269)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~ 249 (269)
.++.--.........++..++++++|+|+.+.- +.+++.+++..-.+
T Consensus 95 np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~ 141 (355)
T PRK05597 95 NPDVKVTVSVRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAAR 141 (355)
T ss_pred CCCcEEEEEEeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 000000000011122345688999999999875 56778887775444
No 271
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.58 E-value=0.0023 Score=55.13 Aligned_cols=97 Identities=16% Similarity=0.176 Sum_probs=64.5
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (269)
..++.|++|.|+|-|.+|..=++.|...|++|+++.+...+...... .++.+. ... ...+. +.+..++
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~-------~~~~i~-~~~---~~~~~-~~~~~~~ 74 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALI-------EEGKIK-WIE---REFDA-EDLDDAF 74 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHH-------HhcCcc-hhh---cccCh-hhhcCce
Confidence 46799999999999999999999999999999999987633211110 011100 111 11223 3344599
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+|+.+.+. .-+|+..+. ..++-.+++|+.
T Consensus 75 lviaAt~d-----~~ln~~i~~-~a~~~~i~vNv~ 103 (210)
T COG1648 75 LVIAATDD-----EELNERIAK-AARERRILVNVV 103 (210)
T ss_pred EEEEeCCC-----HHHHHHHHH-HHHHhCCceecc
Confidence 99999653 334666666 777777888875
No 272
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.55 E-value=0.027 Score=49.80 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-----------EEEEEcC
Q 024297 116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-----------KIIATKR 184 (269)
Q Consensus 116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-----------~V~~~~~ 184 (269)
+|--+++.+++.+|- .++.+.+.+|.|+|.|..|-.+|+++...+. +|+.+|+
T Consensus 4 TaaV~lAgllnAlk~----------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~ 67 (254)
T cd00762 4 TASVAVAGLLAALKV----------------TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDR 67 (254)
T ss_pred hHHHHHHHHHHHHHH----------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECC
Confidence 455778888888885 3578999999999999999999999987765 6999997
Q ss_pred CCCCccccccccchhhhccccccc---cccccCCCCCHHHHHh--hCCEEEEecCCCccccCcCCHHHHhhhCC---CCc
Q 024297 185 SWASHSQVSCQSSALAVKNGIIDD---LVDEKGCHEDIFEFAS--KADVVVCCLSLNKQTVKLCSSSLSSKSMF---FAT 256 (269)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~ell~--~aDvvv~~lp~t~~t~~li~~~~l~~~mk---~ga 256 (269)
..--.....+. .++- .. .........+|.++++ +.|+++-.. ..-++|+++.++ .|. +..
T Consensus 68 ~Gll~~~r~~l-~~~~------~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~-~Ma~~~~~P 135 (254)
T cd00762 68 KGLLVKNRKET-CPNE------YHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIR-AXAEINERP 135 (254)
T ss_pred CCeEeCCCCcc-CHHH------HHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHH-HHhhcCCCC
Confidence 64321100000 0000 00 1111113468999999 999988763 224899999999 998 777
Q ss_pred EEEEccCC
Q 024297 257 YVVFMFQG 264 (269)
Q Consensus 257 ~lIN~~RG 264 (269)
++.=.|..
T Consensus 136 IIFaLSNP 143 (254)
T cd00762 136 VIFALSNP 143 (254)
T ss_pred EEEECCCc
Confidence 77766544
No 273
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=96.54 E-value=0.015 Score=53.09 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=70.4
Q ss_pred hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccc-cccCCEEEEEec-CchHHHHHHH
Q 024297 94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGE-TLLGKTVFILGF-GNIGVELAKR 171 (269)
Q Consensus 94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~-~l~g~~vgIiG~-G~iG~~~a~~ 171 (269)
.+....|+|.|..+. ...++ .+|+-++.+.+.+ |. .+.|++|+++|- +++.+.++..
T Consensus 114 ~a~~~~vPVINag~~---~~HPt--QaL~Dl~Ti~e~~----------------g~~~l~g~~va~vGd~~rv~~Sl~~~ 172 (311)
T PRK14804 114 MKNGSQVPVINGCDN---MFHPC--QSLADIMTIALDS----------------PEIPLNQKQLTYIGVHNNVVNSLIGI 172 (311)
T ss_pred HHHHCCCCEEECCCC---CCChH--HHHHHHHHHHHHh----------------CCCCCCCCEEEEECCCCcHHHHHHHH
Confidence 345567999998764 34555 5555555554431 22 488999999996 7999999999
Q ss_pred hccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (269)
Q Consensus 172 l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~ 232 (269)
+..+|++|.++.+..-.. ..........-..| ......+++++++++|||..-
T Consensus 173 ~~~~G~~v~~~~P~~~~~-~~~~~~~~~~~~~g-------~i~~~~d~~~av~~aDvvy~d 225 (311)
T PRK14804 173 TAALGIHLTLVTPIAAKE-NIHAQTVERAKKKG-------TLSWEMNLHKAVSHADYVYTD 225 (311)
T ss_pred HHHcCCEEEEECCCCccH-HHHHHHHHHHHhcC-------CeEEEeCHHHHhCCCCEEEee
Confidence 999999999998754210 00000000000001 000136899999999999984
No 274
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.54 E-value=0.01 Score=52.70 Aligned_cols=105 Identities=20% Similarity=0.058 Sum_probs=68.8
Q ss_pred ccccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHH
Q 024297 147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA 223 (269)
Q Consensus 147 ~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell 223 (269)
.|.+++..+|+|+| .|.||..+|+.|.+.+++....-|........ .. ..+....+ ...+++..+
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq-----~l-------~~l~e~~~~~~i~s~d~~~ 228 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQ-----RL-------TLLQEELGRGKIMSLDYAL 228 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhh-----hh-------hhcccccCCCeeeeccccc
Confidence 57999999999999 59999999999999998877766432221100 00 01112222 234666666
Q ss_pred hhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297 224 SKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF 269 (269)
Q Consensus 224 ~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde 269 (269)
.+.|+++-... + .+-..|+. + .+|||+++|+-||..=||+
T Consensus 229 ~~e~i~v~vAs-~-~~g~~I~p---q-~lkpg~~ivD~g~P~dvd~ 268 (351)
T COG5322 229 PQEDILVWVAS-M-PKGVEIFP---Q-HLKPGCLIVDGGYPKDVDT 268 (351)
T ss_pred cccceEEEEee-c-CCCceech---h-hccCCeEEEcCCcCccccc
Confidence 66666655443 2 23355555 2 7899999999999877664
No 275
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.52 E-value=0.0013 Score=66.70 Aligned_cols=107 Identities=16% Similarity=0.075 Sum_probs=69.2
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccc---cccchhhhccccccc-----cccccCCCCCHHHHHhh
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSSALAVKNGIIDD-----LVDEKGCHEDIFEFASK 225 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~ 225 (269)
++|+|||.|.||..+|..+...|++|+.+|++.+.-.... ....+..+..|.+.. .........+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 6899999999999999999999999999998765311100 000011111221110 001111224564 5799
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
||+|+=++|-+.+.+.-+-++.=+ .++++++|....
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~-~~~~~~ilasNT 450 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEA-VVPPHCIIASNT 450 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHh-hCCCCcEEEEcC
Confidence 999999999887777666564545 899999887543
No 276
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.50 E-value=0.011 Score=53.86 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=46.9
Q ss_pred CEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhcccccccccc-ccCCCCCHHHHHhhCCEEEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC 231 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDvvv~ 231 (269)
++|+|||.|.+|..+|..+...|. +|+.+|.......... .++. +........ ......++++ +++||+|++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a---~d~~--~~~~~~~~~~~i~~t~d~~~-~~~aDiVIi 75 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKA---LDMY--EASPVGGFDTKVTGTNNYAD-TANSDIVVI 75 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHH---Hhhh--hhhhccCCCcEEEecCCHHH-hCCCCEEEE
Confidence 589999999999999999888765 8999998544211000 0010 000000000 1111256766 789999999
Q ss_pred ecC
Q 024297 232 CLS 234 (269)
Q Consensus 232 ~lp 234 (269)
+.+
T Consensus 76 tag 78 (305)
T TIGR01763 76 TAG 78 (305)
T ss_pred cCC
Confidence 988
No 277
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.49 E-value=0.003 Score=57.19 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=62.9
Q ss_pred EEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhcc---c------------------cccccccc
Q 024297 155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKN---G------------------IIDDLVDE 212 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~---~------------------~~~~~~~~ 212 (269)
+|.|+|.|.+|..+|+.|...|. +++.+|...-...- ...+.-|...+ | .+......
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sN-L~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~ 79 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSN-PVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLS 79 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccc-CCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeee
Confidence 58999999999999999999998 68888853222100 00000001101 0 00000000
Q ss_pred ----------------cCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 213 ----------------KGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 213 ----------------~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
....+.++++++++|+|+.++. +-++|.+++..-.. .+..+||.+-|
T Consensus 80 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tD-n~esR~L~~~~~~~----~~k~~I~aalG 142 (307)
T cd01486 80 IPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTD-SRESRWLPTLLSAA----KNKLVINAALG 142 (307)
T ss_pred ccccccccccccccccccCHHHHHHHHhhCCEEEECCC-CHHHHHHHHHHHHH----hCCcEEEEEec
Confidence 0012347899999999999995 77889888875444 24477776654
No 278
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.49 E-value=0.0095 Score=56.42 Aligned_cols=35 Identities=31% Similarity=0.475 Sum_probs=32.0
Q ss_pred CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
.++|.|||+|.+|.++|+.|+..|++|+++|++..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 46899999999999999999999999999997653
No 279
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.49 E-value=0.008 Score=53.32 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=44.3
Q ss_pred CEEEEEec-CchHHHHHHHhccC-CCEEEE-EcCCCCCccccccccchhhhcccccccccccc--CCCCCHHHHHhhCCE
Q 024297 154 KTVFILGF-GNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GCHEDIFEFASKADV 228 (269)
Q Consensus 154 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ell~~aDv 228 (269)
.+|+|+|+ |.||+.+++.+... ++++.+ ++++...... . ... ....+++++++.+|+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~-----------------~-~~~~i~~~~dl~~ll~~~Dv 63 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG-----------------Q-GALGVAITDDLEAVLADADV 63 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc-----------------c-CCCCccccCCHHHhccCCCE
Confidence 47999998 99999999998864 788666 6655432100 0 111 134688998989999
Q ss_pred EEEecC
Q 024297 229 VVCCLS 234 (269)
Q Consensus 229 vv~~lp 234 (269)
|+.+.|
T Consensus 64 Vid~t~ 69 (257)
T PRK00048 64 LIDFTT 69 (257)
T ss_pred EEECCC
Confidence 997775
No 280
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.47 E-value=0.0046 Score=54.34 Aligned_cols=100 Identities=18% Similarity=0.227 Sum_probs=61.9
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhh------------------hccccccc
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALA------------------VKNGIIDD 208 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~ 208 (269)
...|.+++|.|+|.|.+|..+|+.|...|. +++.+|...-.. .....+.-+. ...+..-.
T Consensus 19 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~-sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~ 97 (240)
T TIGR02355 19 QEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL-SNLQRQVLHSDANIGQPKVESAKDALTQINPHIAIN 97 (240)
T ss_pred HHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc-cCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEE
Confidence 356999999999999999999999999998 688888643321 1111000000 00000000
Q ss_pred cccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297 209 LVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS 249 (269)
Q Consensus 209 ~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~ 249 (269)
......+.+++.++++++|+|+.+.- +.+++..+++...+
T Consensus 98 ~~~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~ 137 (240)
T TIGR02355 98 PINAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFA 137 (240)
T ss_pred EEeccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHH
Confidence 00111122347788999999998885 66788888775544
No 281
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=96.46 E-value=0.029 Score=54.58 Aligned_cols=130 Identities=13% Similarity=0.050 Sum_probs=80.2
Q ss_pred EEecC-CCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHHHHhccCC-
Q 024297 102 VARIP-GDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELAKRLRPFG- 176 (269)
Q Consensus 102 v~n~~-~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a~~l~~~G- 176 (269)
|.|.. |. +..++ .+|+-++.+..++ |..+.|.+|+++|- |++.+.++..+..||
T Consensus 143 VINAgdg~---~~HPT--QaLaDl~TI~E~~----------------G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~ 201 (525)
T PRK13376 143 FINAGDGK---HEHPT--QELLDEFTFLEQN----------------NFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKN 201 (525)
T ss_pred EEECCCCC---CCCch--HHHHHHHHHHHHc----------------CCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCC
Confidence 68876 33 34555 5566666655431 33588999999997 699999999999998
Q ss_pred CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE--EE-------ecCCC-----cc--cc
Q 024297 177 VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV--VC-------CLSLN-----KQ--TV 240 (269)
Q Consensus 177 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv--v~-------~lp~t-----~~--t~ 240 (269)
++|.++.+..-...... ....-.+|. ......+++++++++|+. .. -.... .+ -.
T Consensus 202 ~~v~l~~P~~~~~p~~~---~~~a~~~G~------~v~i~~d~~eav~~AD~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~ 272 (525)
T PRK13376 202 VKVDLIAPEELAMPEHY---VEKMKKNGF------EVRIFSSIEEYLSQKDVAKIWYFTRLQLERMGEDILEKEHILRKA 272 (525)
T ss_pred cEEEEECCccccCCHHH---HHHHHHcCC------eEEEEcCHHHHhccCCccceEEEeccccccCCCccchhHHHHhcC
Confidence 99999986432110000 000000110 011247899999999942 22 11110 00 24
Q ss_pred CcCCHHHHhhhCCCCcEEEEcc
Q 024297 241 KLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 241 ~li~~~~l~~~mk~ga~lIN~~ 262 (269)
..++++.++ .+|++++|.-+.
T Consensus 273 y~vt~elm~-~ak~~ai~MHcL 293 (525)
T PRK13376 273 VTFRKEFLD-KLPEGVKFYHPL 293 (525)
T ss_pred cEECHHHHh-ccCCCCEEECCC
Confidence 567899999 899999988765
No 282
>PRK08328 hypothetical protein; Provisional
Probab=96.40 E-value=0.0057 Score=53.43 Aligned_cols=102 Identities=25% Similarity=0.289 Sum_probs=62.6
Q ss_pred CCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccc-----hhh--------------hc
Q 024297 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSS-----ALA--------------VK 202 (269)
Q Consensus 143 w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~-----~~~--------------~~ 202 (269)
|.......|.+++|.|+|.|.+|.++++.|...|. +++.+|...-.. .....+. +.. ..
T Consensus 17 ~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~-sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~n 95 (231)
T PRK08328 17 FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPEL-SNLNRQILHWEEDLGKNPKPLSAKWKLERFN 95 (231)
T ss_pred cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccCh-hhhccccccChhhcCchHHHHHHHHHHHHhC
Confidence 55545577999999999999999999999999998 688888543221 0000000 000 00
Q ss_pred cccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHH
Q 024297 203 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSS 246 (269)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~ 246 (269)
++..-.........++++++++++|+|+.++- +.+++.+++..
T Consensus 96 p~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d-~~~~r~~l~~~ 138 (231)
T PRK08328 96 SDIKIETFVGRLSEENIDEVLKGVDVIVDCLD-NFETRYLLDDY 138 (231)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHH
Confidence 00000000001122456788999999999986 45677777753
No 283
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=96.40 E-value=0.0031 Score=63.74 Aligned_cols=109 Identities=14% Similarity=0.012 Sum_probs=68.3
Q ss_pred CEEEEEecCchHHHHHHHhc-cCCCEEEEEcCCCCCccccc---cccchhhhcccccccc-----ccccCCCCCHHHHHh
Q 024297 154 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVS---CQSSALAVKNGIIDDL-----VDEKGCHEDIFEFAS 224 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~~l~ell~ 224 (269)
++|+|||.|.||..+|..+. ..|++|+.+|++.+.-.... .......+..|.+... ........++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999987 58999999998754311100 0000011111111110 0011112456 4679
Q ss_pred hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
.||+|+=++|-..+.+.-+-++.=+ .++++++|....-+
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~-~~~~~~ilasnTS~ 422 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQ-ECAAHTIFASNTSS 422 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHh-hCCCCcEEEeCCCC
Confidence 9999999999887776655554445 78999888765443
No 284
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=96.39 E-value=0.0042 Score=61.42 Aligned_cols=109 Identities=18% Similarity=0.141 Sum_probs=67.5
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhcc----cc------------------
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKN----GI------------------ 205 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~----~~------------------ 205 (269)
..|++.+|+|+|.|.+|..+|+.|.+.|. +++++|...-.. .....+.-|+..+ |.
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~-SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~ 412 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSY-SNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQ 412 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECC-CccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcE
Confidence 67899999999999999999999999999 688888432110 0010111111110 00
Q ss_pred cccccccc------C----------CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 206 IDDLVDEK------G----------CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 206 ~~~~~~~~------~----------~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
+....... . ....+.++++++|+|+.++. +.++|.+++..-.. .+..+||.+-
T Consensus 413 i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tD-n~esR~L~n~~c~~----~~kplI~aAl 481 (664)
T TIGR01381 413 ATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLD-SREARWLPTVLCSR----HKKIAISAAL 481 (664)
T ss_pred EEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCC-CHHHHHHHHHHHHH----hCCCEEEEEe
Confidence 00000000 0 01247789999999999987 77889988874433 3556666553
No 285
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.38 E-value=0.015 Score=52.61 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=30.2
Q ss_pred CEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 188 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~ 188 (269)
++|+|||.|.+|..+|..+...|. +|..+|++.+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~ 38 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGV 38 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCch
Confidence 589999999999999999987654 99999986544
No 286
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.38 E-value=0.006 Score=52.07 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.8
Q ss_pred EEEEEec-CchHHHHHHHhccCCCEEEE
Q 024297 155 TVFILGF-GNIGVELAKRLRPFGVKIIA 181 (269)
Q Consensus 155 ~vgIiG~-G~iG~~~a~~l~~~G~~V~~ 181 (269)
+++|||. |.+|+.+++.++..|+.|..
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~~ 29 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVYI 29 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEEE
Confidence 7999998 99999999999999999863
No 287
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.35 E-value=0.011 Score=54.74 Aligned_cols=96 Identities=27% Similarity=0.190 Sum_probs=55.9
Q ss_pred CEEEEEec-CchHHHHHHHhccC-CCEEEEE-cCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297 154 KTVFILGF-GNIGVELAKRLRPF-GVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 154 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv 230 (269)
.+|+|+|. |.+|+++++.|..+ +.++.+. ++........... +++ ............+.++++.++|+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~-----~~~--l~~~~~~~~~~~~~~~~~~~~DvVf 73 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEV-----HPH--LRGLVDLNLEPIDEEEIAEDADVVF 73 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHh-----Ccc--ccccCCceeecCCHHHhhcCCCEEE
Confidence 47999998 99999999999987 7788843 5332111100000 000 0000000001124566667899999
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+|+|.. ..++...+..+.|..+|+.+
T Consensus 74 ~alP~~------~s~~~~~~~~~~G~~VIDlS 99 (346)
T TIGR01850 74 LALPHG------VSAELAPELLAAGVKVIDLS 99 (346)
T ss_pred ECCCch------HHHHHHHHHHhCCCEEEeCC
Confidence 999933 23444441346788888876
No 288
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.34 E-value=0.012 Score=54.48 Aligned_cols=30 Identities=20% Similarity=0.458 Sum_probs=26.1
Q ss_pred EEEEEecCchHHHHHHHhccC-CCEEEEEcC
Q 024297 155 TVFILGFGNIGVELAKRLRPF-GVKIIATKR 184 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~ 184 (269)
+|||+|+|.||+.+++.+... +++|.+...
T Consensus 3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d 33 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAK 33 (341)
T ss_pred EEEEECCCHHHHHHHHHHhcCCCcEEEEEEC
Confidence 799999999999999988854 789888764
No 289
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.33 E-value=0.0045 Score=57.92 Aligned_cols=107 Identities=23% Similarity=0.262 Sum_probs=62.8
Q ss_pred CCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccc--------------cchhhh--ccc
Q 024297 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ--------------SSALAV--KNG 204 (269)
Q Consensus 142 ~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~--------------~~~~~~--~~~ 204 (269)
.|.......+.+++|.|+|.|.+|..+++.|...|. +++.+|+..-.......+ .....+ -|.
T Consensus 124 ~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np 203 (376)
T PRK08762 124 EVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNP 203 (376)
T ss_pred hcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCC
Confidence 354433467899999999999999999999999999 799999752110000000 000000 000
Q ss_pred ccc-ccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297 205 IID-DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS 249 (269)
Q Consensus 205 ~~~-~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~ 249 (269)
.+. ..........++.++++++|+|+.+.- +.+++.++++...+
T Consensus 204 ~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d-~~~~r~~ln~~~~~ 248 (376)
T PRK08762 204 DVQVEAVQERVTSDNVEALLQDVDVVVDGAD-NFPTRYLLNDACVK 248 (376)
T ss_pred CCEEEEEeccCChHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 000 000111122346778999999998875 45677777764433
No 290
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.31 E-value=0.023 Score=50.29 Aligned_cols=121 Identities=15% Similarity=0.157 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccC----CC-------EEEEEcC
Q 024297 116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR 184 (269)
Q Consensus 116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~~~~~ 184 (269)
+|--+++.+++.+|-. ++.|.+.++.|+|.|..|-.+|+++... |. +|+.+|+
T Consensus 4 TaaV~lAgll~Al~~~----------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~ 67 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVT----------------GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDS 67 (255)
T ss_dssp HHHHHHHHHHHHHHHH----------------TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEET
T ss_pred hHHHHHHHHHHHHHHh----------------CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEec
Confidence 5667888888888864 6789999999999999999999999877 88 4999997
Q ss_pred CCCCccccccccchhhhccccccccccccCCC---CCHHHHHhhC--CEEEEecCCCccccCcCCHHHHhhhCCC---Cc
Q 024297 185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCH---EDIFEFASKA--DVVVCCLSLNKQTVKLCSSSLSSKSMFF---AT 256 (269)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~a--Dvvv~~lp~t~~t~~li~~~~l~~~mk~---ga 256 (269)
..--.....+. +..-.......... .+|.|+++.+ |+++-+- ...+.|+++.++ .|.+ ..
T Consensus 68 ~Gll~~~r~~l-------~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~-~Ma~~~erP 135 (255)
T PF03949_consen 68 KGLLTDDREDL-------NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVR-AMAKHNERP 135 (255)
T ss_dssp TEEEBTTTSSH-------SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHH-HCHHHSSSE
T ss_pred cceEeccCccC-------ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHH-HHhccCCCC
Confidence 64321110000 00001122222222 4899999999 9988773 245899999999 9987 77
Q ss_pred EEEEccCC
Q 024297 257 YVVFMFQG 264 (269)
Q Consensus 257 ~lIN~~RG 264 (269)
++.=.|..
T Consensus 136 IIF~LSNP 143 (255)
T PF03949_consen 136 IIFPLSNP 143 (255)
T ss_dssp EEEE-SSS
T ss_pred EEEECCCC
Confidence 77766543
No 291
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.29 E-value=0.0063 Score=52.50 Aligned_cols=39 Identities=28% Similarity=0.265 Sum_probs=34.9
Q ss_pred ccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCC
Q 024297 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (269)
Q Consensus 147 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 185 (269)
....|..++|+|+|.|.+|..+|+.|...|. +++.+|..
T Consensus 22 ~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 22 LLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3467999999999999999999999999998 59999875
No 292
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.28 E-value=0.0096 Score=54.54 Aligned_cols=95 Identities=22% Similarity=0.230 Sum_probs=61.2
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh---hCC
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS---KAD 227 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aD 227 (269)
.|++|.|+|.|.+|+.+++.++..|+ +|++++++..+.....+ -| ++..+.. ...++.++.. ..|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~--------lG-a~~vi~~--~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE--------MG-ADKLVNP--QNDDLDHYKAEKGYFD 237 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH--------cC-CcEEecC--CcccHHHHhccCCCCC
Confidence 58899999999999999999999999 68888876554211110 01 0011110 1123444332 379
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
+++-+.... . .+ ...++ .++++..++.+|-
T Consensus 238 ~vid~~G~~-~---~~-~~~~~-~l~~~G~iv~~G~ 267 (343)
T PRK09880 238 VSFEVSGHP-S---SI-NTCLE-VTRAKGVMVQVGM 267 (343)
T ss_pred EEEECCCCH-H---HH-HHHHH-HhhcCCEEEEEcc
Confidence 998886521 1 12 34677 8999999999874
No 293
>PRK07411 hypothetical protein; Validated
Probab=96.27 E-value=0.0045 Score=58.27 Aligned_cols=109 Identities=19% Similarity=0.152 Sum_probs=66.0
Q ss_pred CCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCcccccccc-----chhh-------------hcc
Q 024297 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQS-----SALA-------------VKN 203 (269)
Q Consensus 143 w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~-----~~~~-------------~~~ 203 (269)
|.......|..++|+|+|.|.+|..+++.|...|. +++.+|...-.. ...... .+.. ...
T Consensus 28 ~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~-sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np 106 (390)
T PRK07411 28 VGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDS-SNLQRQVIHGTSWVGKPKIESAKNRILEINP 106 (390)
T ss_pred cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecc-cccCcCcccChHHCCCcHHHHHHHHHHHHCC
Confidence 44444467999999999999999999999999998 688888542221 000000 0000 000
Q ss_pred ccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCC
Q 024297 204 GIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFF 254 (269)
Q Consensus 204 ~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ 254 (269)
+.--.........++..+++.++|+|+.+.- +.+++.++|....+ .-+|
T Consensus 107 ~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~-~~~p 155 (390)
T PRK07411 107 YCQVDLYETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVL-LNKP 155 (390)
T ss_pred CCeEEEEecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH-cCCC
Confidence 0000000011122346688999998888875 56788888876655 4333
No 294
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.27 E-value=0.0065 Score=54.86 Aligned_cols=112 Identities=14% Similarity=0.090 Sum_probs=62.5
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (269)
.++.++++.|+|.|..+++++..|...|+ +|++++|+.............+....+. ............+.+.+.++|
T Consensus 120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~-~~~~~~~~~~~~l~~~~~~aD 198 (288)
T PRK12749 120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDC-VVTVTDLADQQAFAEALASAD 198 (288)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCc-eEEEechhhhhhhhhhcccCC
Confidence 45788999999999999999999988897 7999999853110100000000000000 000000000112344567899
Q ss_pred EEEEecCCCcc--ccC-cCCHHHHhhhCCCCcEEEEccCC
Q 024297 228 VVVCCLSLNKQ--TVK-LCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 228 vvv~~lp~t~~--t~~-li~~~~l~~~mk~ga~lIN~~RG 264 (269)
+||++.|.--. +.. ++.. .. .++++.+++++--.
T Consensus 199 ivINaTp~Gm~~~~~~~~~~~--~~-~l~~~~~v~D~vY~ 235 (288)
T PRK12749 199 ILTNGTKVGMKPLENESLVND--IS-LLHPGLLVTECVYN 235 (288)
T ss_pred EEEECCCCCCCCCCCCCCCCc--HH-HCCCCCEEEEecCC
Confidence 99999986422 111 2111 23 56778888776533
No 295
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.27 E-value=0.0073 Score=47.51 Aligned_cols=68 Identities=24% Similarity=0.299 Sum_probs=42.2
Q ss_pred EEEEEec-CchHHHHHHHhcc-CCCE-EEEEcCCCCCcc-ccccccchhhhccccccccccccC--CCCCHHHHHhhCCE
Q 024297 155 TVFILGF-GNIGVELAKRLRP-FGVK-IIATKRSWASHS-QVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV 228 (269)
Q Consensus 155 ~vgIiG~-G~iG~~~a~~l~~-~G~~-V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDv 228 (269)
+|+|+|+ |+||+.+++.+.. -|++ |-+++++.++.. ..... . ... ...+ ..+++++++.++|+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~------~----~~~-~~~~~~v~~~l~~~~~~~DV 70 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGE------L----AGI-GPLGVPVTDDLEELLEEADV 70 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHH------H----CTS-ST-SSBEBS-HHHHTTH-SE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhh------h----hCc-CCcccccchhHHHhcccCCE
Confidence 7999999 9999999999997 6898 555555542210 00000 0 000 0111 24789999999999
Q ss_pred EEEec
Q 024297 229 VVCCL 233 (269)
Q Consensus 229 vv~~l 233 (269)
++-..
T Consensus 71 vIDfT 75 (124)
T PF01113_consen 71 VIDFT 75 (124)
T ss_dssp EEEES
T ss_pred EEEcC
Confidence 88775
No 296
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=96.26 E-value=0.0094 Score=58.93 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=51.5
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
.....|+|||||-|..|+.+++.++.+|++|+++|.++..... +..+ .....++.+.+.+.++.+++|+
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~---~~AD--------~~~v~~~~D~~~l~~~a~~~dv 86 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPAS---SVAA--------RHVVGSFDDRAAVREFAKRCDV 86 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchh---hhCc--------eeeeCCCCCHHHHHHHHHHCCE
Confidence 4578899999999999999999999999999999986542110 0000 0011111123347777889999
Q ss_pred EEEecC
Q 024297 229 VVCCLS 234 (269)
Q Consensus 229 vv~~lp 234 (269)
|+....
T Consensus 87 It~e~e 92 (577)
T PLN02948 87 LTVEIE 92 (577)
T ss_pred EEEecC
Confidence 877644
No 297
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.25 E-value=0.0094 Score=55.65 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=66.5
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccccc------CCCCCHHHHHhhCC
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK------GCHEDIFEFASKAD 227 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~ell~~aD 227 (269)
++|.|+|.|=+|...+-.|..+|.+|+.+|....+-...-...++. +-.|. +++..+. ....+.++.++.+|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI-~EpgL-e~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPI-YEPGL-EELLKENLASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCC-cCccH-HHHHHhccccCcEEEEcCHHHHHhcCC
Confidence 4799999999999999999999999999998665421110000000 00111 1222211 12367889999999
Q ss_pred EEEEecCCCccccCcCCHH--------HHhhhCCCCcEEEEc
Q 024297 228 VVVCCLSLNKQTVKLCSSS--------LSSKSMFFATYVVFM 261 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~--------~l~~~mk~ga~lIN~ 261 (269)
++++++|-.+...+-+|-. ..+ .++..+++|+=
T Consensus 79 v~fIavgTP~~~dg~aDl~~V~ava~~i~~-~~~~~~vvV~K 119 (414)
T COG1004 79 VVFIAVGTPPDEDGSADLSYVEAVAKDIGE-ILDGKAVVVIK 119 (414)
T ss_pred EEEEEcCCCCCCCCCccHHHHHHHHHHHHh-hcCCCeEEEEc
Confidence 9999999554445555432 333 56666777764
No 298
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.22 E-value=0.0079 Score=45.95 Aligned_cols=84 Identities=15% Similarity=0.082 Sum_probs=53.8
Q ss_pred chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccc--cccCCCCCHHHHHhhCCEEEEecCCCcccc
Q 024297 163 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKGCHEDIFEFASKADVVVCCLSLNKQTV 240 (269)
Q Consensus 163 ~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDvvv~~lp~t~~t~ 240 (269)
+-+..+++.|+..|++|.+||+........ ... ......+++++.++.+|+||++.+.. +-+
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~ 80 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIK---------------ELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFR 80 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHH---------------HHCHHHCEEEESSHHHHHTTESEEEESS--G-GGG
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHH---------------hhCCccceEEecCHHHHhcCCCEEEEEecCH-HHh
Confidence 446889999999999999999876542110 000 01112368899999999999998844 444
Q ss_pred CcCCHHHHhhhCCCCcEEEEccCC
Q 024297 241 KLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 241 ~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
. ++-+.+...|+++.++|++ ||
T Consensus 81 ~-l~~~~~~~~~~~~~~iiD~-~~ 102 (106)
T PF03720_consen 81 E-LDWEEIAKLMRKPPVIIDG-RN 102 (106)
T ss_dssp C-CGHHHHHHHSCSSEEEEES-SS
T ss_pred c-cCHHHHHHhcCCCCEEEEC-cc
Confidence 4 3444444379889999987 44
No 299
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=96.22 E-value=0.007 Score=55.89 Aligned_cols=66 Identities=29% Similarity=0.266 Sum_probs=44.8
Q ss_pred EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~ 231 (269)
||||||.|..|+.+++.++.+|++|++++.++....... .+. .........+.+.+++..+|+|..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~---ad~--------~~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQV---ADH--------VVLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHh---Cce--------eEeCCCCCHHHHHHHHhhCCEEEe
Confidence 589999999999999999999999999998654321100 000 011111123447788889998754
No 300
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.19 E-value=0.0094 Score=53.00 Aligned_cols=92 Identities=13% Similarity=0.145 Sum_probs=52.7
Q ss_pred CEEEEEecCchHHHHHHHhcc---CCCEEEEE-cCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCE
Q 024297 154 KTVFILGFGNIGVELAKRLRP---FGVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADV 228 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~---~G~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDv 228 (269)
.+|||||+|.||+.+++.+.. .++++.++ ++...+. . ..........+++++ ..+.|+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~-~----------------~~~~~~~~~~~l~~ll~~~~Dl 65 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLP-P----------------ALAGRVALLDGLPGLLAWRPDL 65 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHH-H----------------HhhccCcccCCHHHHhhcCCCE
Confidence 689999999999999998864 24665554 4433221 0 111111234678887 468898
Q ss_pred EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS 268 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd 268 (269)
|+=|.+.. .. ++.-.+-|+.|.-++-++=|.+-|
T Consensus 66 VVE~A~~~-av-----~e~~~~iL~~g~dlvv~SvGALaD 99 (267)
T PRK13301 66 VVEAAGQQ-AI-----AEHAEGCLTAGLDMIICSAGALAD 99 (267)
T ss_pred EEECCCHH-HH-----HHHHHHHHhcCCCEEEEChhHhcC
Confidence 88886521 11 111111455555555555455443
No 301
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.19 E-value=0.03 Score=50.74 Aligned_cols=89 Identities=17% Similarity=0.128 Sum_probs=62.7
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEE
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV 229 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvv 229 (269)
.+++++|||-=.=-..+++.|.+.|++|..+.-..... ...+ ...+.+++++++|+|
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---------------------~~~g~~~~~~~~~~~~~ad~i 59 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---------------------GFTGATKSSSLEEALSDVDVI 59 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---------------------ccCCceeeccHHHHhccCCEE
Confidence 37899999999988999999999999999865322110 0011 123567889999999
Q ss_pred EEecCCCccc---cC-------cCCHHHHhhhCCCCcEEEEccC
Q 024297 230 VCCLSLNKQT---VK-------LCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 230 v~~lp~t~~t---~~-------li~~~~l~~~mk~ga~lIN~~R 263 (269)
+.-+|.+.+. +. -++.+.++ .||++..++ +|.
T Consensus 60 i~~~p~~~~~~~i~~~~~~~~~~~~~~~l~-~l~~~~~v~-~G~ 101 (296)
T PRK08306 60 ILPVPGTNDEGNVDTVFSNEKLVLTEELLE-LTPEHCTIF-SGI 101 (296)
T ss_pred EECCccccCCceeeccccccCCcchHHHHH-hcCCCCEEE-Eec
Confidence 9998875432 11 23677899 999998433 344
No 302
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.17 E-value=0.011 Score=57.37 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=33.0
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
+.|++|.|+|+|.+|.++++.|+..|++|+++|...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 468899999999999999999999999999999653
No 303
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=96.14 E-value=0.06 Score=50.76 Aligned_cols=137 Identities=12% Similarity=0.046 Sum_probs=84.2
Q ss_pred cEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-----C---chHHHHHHH
Q 024297 100 IKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-----G---NIGVELAKR 171 (269)
Q Consensus 100 I~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-----G---~iG~~~a~~ 171 (269)
++|.|.-+. +..++ .+|+-++.+...+ | .-..+.|+||+|+|- | ++.+.++..
T Consensus 153 pPVINa~~~---~~HPt--QaLaDl~TI~E~~---------G-----~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~ 213 (395)
T PRK07200 153 PTLVNLQCD---IDHPT--QSMADLLHLIEHF---------G-----GLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGL 213 (395)
T ss_pred CeEEECCCC---CCCcH--HHHHHHHHHHHHh---------C-----CCcccCCCEEEEEeccccccCCcchHHHHHHHH
Confidence 369998654 45666 5666666665432 1 012488999999985 5 567999999
Q ss_pred hccCCCEEEEEcCCCCCcccccccc-chhhhccccccccccccCCCCCHHHHHhhCCEEEEecCC--------------C
Q 024297 172 LRPFGVKIIATKRSWASHSQVSCQS-SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL--------------N 236 (269)
Q Consensus 172 l~~~G~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~--------------t 236 (269)
+..+|++|.++.+..-...+..... ....-.+|. ......+++++++++|||..-.=- .
T Consensus 214 ~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~------~i~~~~d~~eav~~aDvVYtd~W~sm~~~~er~~~~~~~ 287 (395)
T PRK07200 214 MTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGG------SFRQVNSMEEAFKDADIVYPKSWAPYKVMEERTELYRAG 287 (395)
T ss_pred HHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCC------eEEEEcCHHHHhCCCCEEEEcCeeecccccccccccccc
Confidence 9999999999987532111100000 000000110 011247899999999999987300 0
Q ss_pred c-----------------cccCcCCHHHHhhhCCCC-cEEEEcc
Q 024297 237 K-----------------QTVKLCSSSLSSKSMFFA-TYVVFMF 262 (269)
Q Consensus 237 ~-----------------~t~~li~~~~l~~~mk~g-a~lIN~~ 262 (269)
. -...-+|.+.++ ..+++ ++|.-+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~y~v~~elm~-~a~~~~ai~MHcL 330 (395)
T PRK07200 288 DHEGIKALEKELLAQNAQHKDWHCTEEMMK-LTKDGKALYMHCL 330 (395)
T ss_pred cchhhhhhhhhhhHHHHHccCCCcCHHHHh-ccCCCCcEEECCC
Confidence 0 123467888998 88885 8888765
No 304
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=96.14 E-value=0.013 Score=52.87 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=74.5
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC----------CCC
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----------CHE 217 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 217 (269)
+...+..++.++|+|-+|-+++-...-.|+-|..++-.+....+..+.-..|....+ ++...-+. ..+
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~--ee~~gGYAk~ms~~~~~~q~~ 236 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVED--EESAGGYAKEMSEEFIAKQAE 236 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccc--cccCCCccccCCHHHHHHHHH
Confidence 466788899999999999999999999999999999655543322211111111110 01000010 012
Q ss_pred CHHHHHhhCCEEEEe--cCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 218 DIFEFASKADVVVCC--LSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 218 ~l~ell~~aDvvv~~--lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
-+.+..++.|+||.+ .|..|. -.+++++..+ .||||+++|+.+
T Consensus 237 ~~a~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~-sMkpGSViVDlA 281 (356)
T COG3288 237 LVAEQAKEVDIVITTALIPGRPA-PKLVTAEMVA-SMKPGSVIVDLA 281 (356)
T ss_pred HHHHHhcCCCEEEEecccCCCCC-chhhHHHHHH-hcCCCcEEEEeh
Confidence 356778899999987 454433 4688999999 999999999987
No 305
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.11 E-value=0.0082 Score=54.91 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=32.7
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCC
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWAS 188 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~ 188 (269)
.+++|+|||.|.+|..+|..+...|. ++..+|++...
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~ 43 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEK 43 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCch
Confidence 56799999999999999999998887 89999986654
No 306
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.10 E-value=0.0045 Score=58.90 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=48.9
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCEEEEe
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADVVVCC 232 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDvvv~~ 232 (269)
++|.|+|+|.+|+.+++.|...|.+|+++++++........ ..+..-..........++++ +.++|.|+++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~--------~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQD--------RLDVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh--------hcCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 47899999999999999999999999999986654211000 00000001111122345666 7899999999
Q ss_pred cCCC
Q 024297 233 LSLN 236 (269)
Q Consensus 233 lp~t 236 (269)
++..
T Consensus 73 ~~~~ 76 (453)
T PRK09496 73 TDSD 76 (453)
T ss_pred cCCh
Confidence 8743
No 307
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=96.09 E-value=0.037 Score=52.03 Aligned_cols=132 Identities=21% Similarity=0.180 Sum_probs=87.3
Q ss_pred cCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCC
Q 024297 97 RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176 (269)
Q Consensus 97 ~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G 176 (269)
+..|+|.|.- ..-+|=.+++.+++.+|- .|+.|+..+|.+.|.|.-|-++++.+.+.|
T Consensus 165 ~~~IPvFhDD------qqGTaiv~lA~llnalk~----------------~gk~l~d~kiv~~GAGAAgiaia~~l~~~g 222 (432)
T COG0281 165 RMNIPVFHDD------QQGTAIVTLAALLNALKL----------------TGKKLKDQKIVINGAGAAGIAIADLLVAAG 222 (432)
T ss_pred cCCCCccccc------ccHHHHHHHHHHHHHHHH----------------hCCCccceEEEEeCCcHHHHHHHHHHHHhC
Confidence 4467777652 244677888899988886 378999999999999999999999999999
Q ss_pred C---EEEEEcCCCCCccccccccchhhhccccccccc-cccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhC
Q 024297 177 V---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSM 252 (269)
Q Consensus 177 ~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~m 252 (269)
+ +|+.+|+..--.....+ .. .+---.... ........ ++.+..+|+++-+- ..+.++++.++ .|
T Consensus 223 ~~~~~i~~~D~~G~l~~~r~~----~~-~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~-~M 290 (432)
T COG0281 223 VKEENIFVVDRKGLLYDGRED----LT-MNQKKYAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVK-EM 290 (432)
T ss_pred CCcccEEEEecCCcccCCCcc----cc-cchHHHHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHH-Hh
Confidence 8 59999986432211100 00 000000000 01111111 45788999888773 23999999999 99
Q ss_pred CCCcEEEEcc
Q 024297 253 FFATYVVFMF 262 (269)
Q Consensus 253 k~ga~lIN~~ 262 (269)
.+..++.=++
T Consensus 291 a~~PiIfala 300 (432)
T COG0281 291 AKHPIIFALA 300 (432)
T ss_pred ccCCEEeecC
Confidence 8887665443
No 308
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.07 E-value=0.011 Score=56.37 Aligned_cols=37 Identities=41% Similarity=0.602 Sum_probs=34.3
Q ss_pred cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
.+.+|+|.|+|.|.+|.++|+.|...|++|+++|++.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3678999999999999999999999999999999864
No 309
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.03 E-value=0.0081 Score=57.71 Aligned_cols=97 Identities=10% Similarity=0.074 Sum_probs=64.3
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (269)
.-++.|++|.|||.|.++..=++.|..+|++|+++.+...+...... ..|.+ ... ...-..+.+..++
T Consensus 7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~-------~~~~i-~~~----~~~~~~~dl~~~~ 74 (457)
T PRK10637 7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWA-------DAGML-TLV----EGPFDESLLDTCW 74 (457)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHH-------hCCCE-EEE----eCCCChHHhCCCE
Confidence 35799999999999999999999999999999999875443211110 01100 011 1112245678899
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+|+.+... .-+|++... ..+...+++|++
T Consensus 75 lv~~at~d-----~~~n~~i~~-~a~~~~~lvN~~ 103 (457)
T PRK10637 75 LAIAATDD-----DAVNQRVSE-AAEARRIFCNVV 103 (457)
T ss_pred EEEECCCC-----HHHhHHHHH-HHHHcCcEEEEC
Confidence 88888542 235676666 666677888875
No 310
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.02 E-value=0.029 Score=54.17 Aligned_cols=114 Identities=13% Similarity=0.060 Sum_probs=66.3
Q ss_pred ccccCCEEEEEec----------CchHHHHHHHhccCCCEEEEEcCCCCCccccccc-cchhhhcccc--c---cccccc
Q 024297 149 ETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALAVKNGI--I---DDLVDE 212 (269)
Q Consensus 149 ~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~-~~~~~~~~~~--~---~~~~~~ 212 (269)
.++.|++|+|+|+ .+-...+++.|...|.+|.+||+........... ...+..+... . ......
T Consensus 320 ~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (473)
T PLN02353 320 NTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQ 399 (473)
T ss_pred cccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccc
Confidence 3589999999997 6788999999999999999999864321000000 0000000000 0 000000
Q ss_pred cCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297 213 KGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 213 ~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
.....++.+.++.||+|+++.+.. +.+. ++-+.+...|++..++|+. |+-
T Consensus 400 ~~~~~~~~~a~~~aD~vvi~t~~~-ef~~-l~~~~~~~~m~~~~~viD~-rn~ 449 (473)
T PLN02353 400 VSVVWDAYEATKGAHGICILTEWD-EFKT-LDYQKIYDNMQKPAFVFDG-RNV 449 (473)
T ss_pred eeeeCCHHHHhcCCCEEEECCCCh-Hhcc-cCHHHHHHhccCCCEEEEC-CCC
Confidence 011245678999999999998754 3333 3444433167766677774 543
No 311
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.02 E-value=0.0019 Score=51.97 Aligned_cols=100 Identities=22% Similarity=0.161 Sum_probs=55.0
Q ss_pred EEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCC
Q 024297 156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 235 (269)
Q Consensus 156 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~ 235 (269)
|+|+|.|.||.-+|.+|+..|.+|..+.|.. .... .. ..++.+....-+.............+....+|+|++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~-~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEA-IK-EQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHH-HH-HHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHh-hh-heeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence 6899999999999999999999999999866 2111 00 0011111100000000000111224567899999999874
Q ss_pred CccccCcCCHHHHhhhCCCCcEEEEc
Q 024297 236 NKQTVKLCSSSLSSKSMFFATYVVFM 261 (269)
Q Consensus 236 t~~t~~li~~~~l~~~mk~ga~lIN~ 261 (269)
. ++...+.. ... .+.+++.++-.
T Consensus 78 ~-~~~~~l~~-l~~-~~~~~t~iv~~ 100 (151)
T PF02558_consen 78 Y-QLEQALQS-LKP-YLDPNTTIVSL 100 (151)
T ss_dssp G-GHHHHHHH-HCT-GEETTEEEEEE
T ss_pred c-chHHHHHH-Hhh-ccCCCcEEEEE
Confidence 3 34444333 223 55666555543
No 312
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.01 E-value=0.0092 Score=55.60 Aligned_cols=96 Identities=9% Similarity=0.037 Sum_probs=62.6
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHH---HHHhhCCEEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF---EFASKADVVV 230 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---ell~~aDvvv 230 (269)
..+|+||+|-||+.+|......|++|.+|+|+.++...-... ++ .........+++ ..|+.-..|+
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~-------~~----~~k~i~~~~sieefV~~Le~PRkI~ 72 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE-------RA----KGKNIVPAYSIEEFVASLEKPRKIL 72 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh-------Cc----cCCCccccCcHHHHHHHhcCCceEE
Confidence 469999999999999999999999999999998774221110 00 000111233444 4456777788
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+.+-.-.-....|+. .+. .|.+|-++|+-|
T Consensus 73 lMVkAG~~VD~~I~~-L~p-~Le~gDIiIDGG 102 (473)
T COG0362 73 LMVKAGTPVDAVIEQ-LLP-LLEKGDIIIDGG 102 (473)
T ss_pred EEEecCCcHHHHHHH-HHh-hcCCCCEEEeCC
Confidence 777543212334433 666 788888888754
No 313
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=96.00 E-value=0.017 Score=52.75 Aligned_cols=111 Identities=19% Similarity=0.211 Sum_probs=67.3
Q ss_pred cccCCEEEEEecCchHHHHHHHhcc-------CCCEEEEEcCCCCCccc--cc-----cccchhhhccccccccccccCC
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRP-------FGVKIIATKRSWASHSQ--VS-----CQSSALAVKNGIIDDLVDEKGC 215 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~-------~G~~V~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~ 215 (269)
+..-++|+|||.|+.|+++|+.+.. |..+|..|-+...-.-. .. ..+...-|..|+ .......-
T Consensus 18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~--~lP~NvvA 95 (372)
T KOG2711|consen 18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGI--KLPENVVA 95 (372)
T ss_pred hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCc--cCCCCeEe
Confidence 3445799999999999999998762 34455555432221100 00 001111122221 11111113
Q ss_pred CCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297 216 HEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 216 ~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
..++.+++.+||+++..+|.+ -+..+++. ... +.|+++..|....|=
T Consensus 96 v~dl~ea~~dADilvf~vPhQ-f~~~ic~~-l~g-~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVPHQ-FIPRICEQ-LKG-YVKPGATAISLIKGV 142 (372)
T ss_pred cchHHHHhccCCEEEEeCChh-hHHHHHHH-Hhc-ccCCCCeEEEeecce
Confidence 468999999999999999954 34444433 666 899999999988773
No 314
>PRK05086 malate dehydrogenase; Provisional
Probab=95.95 E-value=0.053 Score=49.50 Aligned_cols=75 Identities=24% Similarity=0.192 Sum_probs=45.5
Q ss_pred CEEEEEec-CchHHHHHHHhc---cCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297 154 KTVFILGF-GNIGVELAKRLR---PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (269)
Q Consensus 154 ~~vgIiG~-G~iG~~~a~~l~---~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv 229 (269)
++|+|||. |.||++++..+. ..+.++..++++........ ++..... ...... ...+++.+.++++|+|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~al----Dl~~~~~--~~~i~~-~~~~d~~~~l~~~DiV 73 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAV----DLSHIPT--AVKIKG-FSGEDPTPALEGADVV 73 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceeh----hhhcCCC--CceEEE-eCCCCHHHHcCCCCEE
Confidence 58999999 999999998773 45668999998643211001 1100000 000000 0135677888999999
Q ss_pred EEecCC
Q 024297 230 VCCLSL 235 (269)
Q Consensus 230 v~~lp~ 235 (269)
++++-.
T Consensus 74 IitaG~ 79 (312)
T PRK05086 74 LISAGV 79 (312)
T ss_pred EEcCCC
Confidence 999753
No 315
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.93 E-value=0.014 Score=50.40 Aligned_cols=39 Identities=28% Similarity=0.498 Sum_probs=34.5
Q ss_pred cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
.+.++++.|+|. |.||+++++.|...|++|++++|+..+
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~ 41 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEA 41 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 367899999995 899999999999999999999998643
No 316
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.88 E-value=0.016 Score=54.49 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=59.5
Q ss_pred ccCCEEEEEec-CchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccc-cccCCCCCHHH-HHhhC
Q 024297 151 LLGKTVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFE-FASKA 226 (269)
Q Consensus 151 l~g~~vgIiG~-G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~e-ll~~a 226 (269)
...++|+|+|. |.+|+++.++|... +++|..+.+.......... ..++ .. .......+++. .++++
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~-----~~~~-----l~~~~~~~~~~~~~~~~~~~ 105 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGS-----VFPH-----LITQDLPNLVAVKDADFSDV 105 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchh-----hCcc-----ccCccccceecCCHHHhcCC
Confidence 45569999995 99999999999988 7898888764322111000 0000 00 00001122222 24789
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+|++++|.. ...+... .|+.|..+|+.+
T Consensus 106 DvVf~Alp~~------~s~~i~~-~~~~g~~VIDlS 134 (381)
T PLN02968 106 DAVFCCLPHG------TTQEIIK-ALPKDLKIVDLS 134 (381)
T ss_pred CEEEEcCCHH------HHHHHHH-HHhCCCEEEEcC
Confidence 9999999843 3455666 677889899887
No 317
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=95.83 E-value=0.078 Score=48.94 Aligned_cols=138 Identities=12% Similarity=-0.033 Sum_probs=83.6
Q ss_pred hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccc-cCCEEEEEecC-------chH
Q 024297 94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETL-LGKTVFILGFG-------NIG 165 (269)
Q Consensus 94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l-~g~~vgIiG~G-------~iG 165 (269)
.+...+|+|.|..+. ..++ .+|+-++.+.+++ ..+ .|+||+|+|.| ++.
T Consensus 132 ~a~~s~vPVINa~~~----~HPt--QaLaDl~Ti~e~~-----------------g~~~~g~ki~i~~~gd~~~~~~~v~ 188 (335)
T PRK04523 132 FAKYSTVPVINMETI----THPC--QELAHALALQEHF-----------------GTTLRGKKYVLTWTYHPKPLNTAVA 188 (335)
T ss_pred HHHhCCCCEEECCCC----CChH--HHHHHHHHHHHHh-----------------CCccCCCEEEEEEeccCcccccHHH
Confidence 345568999998653 3555 5566666665542 236 79999877643 788
Q ss_pred HHHHHHhccCCCEEEEEcC-CCCCcccc-ccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCC-----c-
Q 024297 166 VELAKRLRPFGVKIIATKR-SWASHSQV-SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN-----K- 237 (269)
Q Consensus 166 ~~~a~~l~~~G~~V~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t-----~- 237 (269)
+.++..+..+|++|.++.+ ..-..... ...-..++-.+|+ ......+++++++++|||..-.=-. .
T Consensus 189 ~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~------~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~ 262 (335)
T PRK04523 189 NSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGG------SLTVSHDIDSAYAGADVVYAKSWGALPFFGNW 262 (335)
T ss_pred HHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCC------eEEEEcCHHHHhCCCCEEEeceeeccccCCcc
Confidence 8999999999999999987 32111000 0000000000110 0112478999999999999865211 0
Q ss_pred c---------ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 238 Q---------TVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 238 ~---------t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+ ....+|++.++ ..+ +++|.-+.
T Consensus 263 ~~~~~~~~~~~~y~v~~~ll~-~a~-~~i~mHcL 294 (335)
T PRK04523 263 EPEKPIRDQYQHFIVDERKMA-LTN-NGVFSHCL 294 (335)
T ss_pred cccHHHHHhCcCCcCCHHHHh-CCC-CCEEECCC
Confidence 0 13567888888 654 77777654
No 318
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.81 E-value=0.017 Score=51.45 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=41.8
Q ss_pred CEEEEEecCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhcccccccccc-ccCCCCCHHHHHhhCCEEEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC 231 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDvvv~ 231 (269)
.+|||||+|.||+.+++.+... ++++.++-.......... .... ......+++++-.+.|+|+.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~--------------~~~~~~~~~~~d~~~l~~~~DvVve 67 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVR--------------RALGEAVRVVSSVDALPQRPDLVVE 67 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHh--------------hhhccCCeeeCCHHHhccCCCEEEE
Confidence 4899999999999999998865 677555432111100000 0000 01123567777456899999
Q ss_pred ecCC
Q 024297 232 CLSL 235 (269)
Q Consensus 232 ~lp~ 235 (269)
+.|.
T Consensus 68 ~t~~ 71 (265)
T PRK13303 68 CAGH 71 (265)
T ss_pred CCCH
Confidence 9874
No 319
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.80 E-value=0.015 Score=53.00 Aligned_cols=75 Identities=23% Similarity=0.088 Sum_probs=47.2
Q ss_pred CEEEEEecCchHHHHHHHhccCC--CEEEEEcCCCCCccc-cccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQ-VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv 230 (269)
.+|+|||.|.+|..+|..|...| .+|..+|++..+... ..+. .+...... .. . ....+. +.+++||+|+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl-~~~~~~~~---~~--~-i~~~d~-~~l~~aDiVi 72 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDL-AHGTPFVK---PV--R-IYAGDY-ADCKGADVVV 72 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHH-HccccccC---Ce--E-EeeCCH-HHhCCCCEEE
Confidence 37999999999999999999888 589999987654211 0000 00000000 00 0 011344 4589999999
Q ss_pred EecCCC
Q 024297 231 CCLSLN 236 (269)
Q Consensus 231 ~~lp~t 236 (269)
++.+..
T Consensus 73 ita~~~ 78 (308)
T cd05292 73 ITAGAN 78 (308)
T ss_pred EccCCC
Confidence 998853
No 320
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=95.79 E-value=0.13 Score=46.73 Aligned_cols=134 Identities=15% Similarity=0.087 Sum_probs=83.2
Q ss_pred HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-CchHHHHHHHhc
Q 024297 95 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-GNIGVELAKRLR 173 (269)
Q Consensus 95 ~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l~ 173 (269)
+...+|+|.|..+. ...++ .+|+-++.+..++ .++.|+||+++|= -++.+.++..+.
T Consensus 111 a~~~~vPVINa~~~---~~HPt--QaL~Dl~Ti~e~~-----------------g~l~g~kva~vGD~~~v~~S~~~~~~ 168 (302)
T PRK14805 111 AEHGSVPVINALCD---LYHPC--QALADFLTLAEQF-----------------GDVSKVKLAYVGDGNNVTHSLMYGAA 168 (302)
T ss_pred HHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHh-----------------CCcCCcEEEEEcCCCccHHHHHHHHH
Confidence 34457999998664 44566 5666666665432 2488999999996 567799999999
Q ss_pred cCCCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCCEEEEecCC---C----cc----
Q 024297 174 PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCLSL---N----KQ---- 238 (269)
Q Consensus 174 ~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDvvv~~lp~---t----~~---- 238 (269)
.+|++|.++.+..-...... ...+ .+.....+ ..+++ +.++++|||....-. . ++
T Consensus 169 ~~g~~v~~~~P~~~~~~~~~---~~~a------~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~w~~~~~~~~~~~~~~~ 238 (302)
T PRK14805 169 ILGATMTVICPPGHFPDGQI---VAEA------QELAAKSGGKLVLTSDI-EAIEGHDAIYTDTWISMGDDTPLAEIKAK 238 (302)
T ss_pred HcCCEEEEECCchhcCCHHH---HHHH------HHHHHHcCCEEEEEcCH-HHHCCCCEEEeeceEeCCCccccHHHHHh
Confidence 99999999987442211000 0000 00001111 13455 579999999984310 0 11
Q ss_pred -ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 239 -TVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 239 -t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
...-++++.++ .+|+. +|.-+.
T Consensus 239 ~~~y~vt~~~l~-~a~~~-~vmH~l 261 (302)
T PRK14805 239 FAPYQVNKALME-KAGAT-FVMHCQ 261 (302)
T ss_pred ccCCcCCHHHHh-cCCCC-eEECCC
Confidence 23678999999 88876 666554
No 321
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.75 E-value=0.019 Score=54.85 Aligned_cols=38 Identities=29% Similarity=0.519 Sum_probs=34.5
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
..+++|.|+|+|.-|.++++.|...|++|+++|.++.+
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 44999999999999999999999999999999976554
No 322
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.74 E-value=0.0089 Score=53.55 Aligned_cols=89 Identities=18% Similarity=0.129 Sum_probs=56.9
Q ss_pred CCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCEEE
Q 024297 153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADVVV 230 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDvvv 230 (269)
++++.|+|.|..+++++..|...|+ +|++++|+.++.. .+..... .....++ ...+|+||
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~-----------------~la~~~~-~~~~~~~~~~~~dlvI 183 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGK-----------------ALAELYG-YEWRPDLGGIEADILV 183 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHH-----------------HHHHHhC-CcchhhcccccCCEEE
Confidence 4689999999999999999999998 5999999875421 1111111 0000111 24689999
Q ss_pred EecCCCccc-----cCcCCHHHHhhhCCCCcEEEEccC
Q 024297 231 CCLSLNKQT-----VKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 231 ~~lp~t~~t-----~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
++.|.--.. ...++. . .++++.+++++--
T Consensus 184 NaTp~Gm~~~~~~~~~pi~~---~-~l~~~~~v~D~vY 217 (272)
T PRK12550 184 NVTPIGMAGGPEADKLAFPE---A-EIDAASVVFDVVA 217 (272)
T ss_pred ECCccccCCCCccccCCCCH---H-HcCCCCEEEEeec
Confidence 999854221 112333 3 4667777777653
No 323
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.72 E-value=0.011 Score=49.45 Aligned_cols=92 Identities=21% Similarity=0.233 Sum_probs=54.8
Q ss_pred EEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhh---------------hc--ccccc-ccccccCC
Q 024297 155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALA---------------VK--NGIID-DLVDEKGC 215 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~---------------~~--~~~~~-~~~~~~~~ 215 (269)
+|+|+|.|.+|..+++.|...|. +++.+|...-... ....+. +. +. |-... ........
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~s-Nl~Rq~-~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~ 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPS-NLNRQQ-YFLSQIGEPKVEALKENLREINPFVKIEAINIKID 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCc-chhccc-ccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC
Confidence 58999999999999999999999 5999997541100 000000 00 00 00000 00000112
Q ss_pred CCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297 216 HEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS 249 (269)
Q Consensus 216 ~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~ 249 (269)
.++++++++++|+|+.+.- +.+++..++....+
T Consensus 79 ~~~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~ 111 (174)
T cd01487 79 ENNLEGLFGDCDIVVEAFD-NAETKAMLAESLLG 111 (174)
T ss_pred hhhHHHHhcCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 2356788999999999954 67777766665544
No 324
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.71 E-value=0.025 Score=50.25 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=57.4
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH--hhCCE
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA--SKADV 228 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--~~aDv 228 (269)
.|++|.|+|.|.+|..+++.++.+|++ |++++++..+...... -| ++...........+.++. ...|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~--------~G-a~~~i~~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS--------FG-ATALAEPEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH--------cC-CcEecCchhhHHHHHHHhCCCCCCE
Confidence 688999999999999999999999996 8888765543211000 00 000110000001122222 24798
Q ss_pred EEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
++-+.... ..+ ...++ .++++..++.+|
T Consensus 191 vid~~G~~----~~~-~~~~~-~l~~~G~iv~~G 218 (280)
T TIGR03366 191 ALEFSGAT----AAV-RACLE-SLDVGGTAVLAG 218 (280)
T ss_pred EEECCCCh----HHH-HHHHH-HhcCCCEEEEec
Confidence 88876421 122 23567 889999998887
No 325
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.70 E-value=0.021 Score=52.53 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=59.5
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC---CCccccccccchhhhccccccccccccCCCCCHH--HHHhh
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW---ASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF--EFASK 225 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--ell~~ 225 (269)
..|++|.|+|.|.+|+.+++.++..|++|++++++. .+. .... .-|. .... ....++. .....
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~-~~~~-------~~Ga--~~v~--~~~~~~~~~~~~~~ 238 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKA-DIVE-------ELGA--TYVN--SSKTPVAEVKLVGE 238 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHH-------HcCC--EEec--CCccchhhhhhcCC
Confidence 367899999999999999999999999999998742 121 0000 0000 0000 0111211 12346
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
.|+|+-++... ..+ .+.++ .++++..++.+|-
T Consensus 239 ~d~vid~~g~~----~~~-~~~~~-~l~~~G~~v~~G~ 270 (355)
T cd08230 239 FDLIIEATGVP----PLA-FEALP-ALAPNGVVILFGV 270 (355)
T ss_pred CCEEEECcCCH----HHH-HHHHH-HccCCcEEEEEec
Confidence 89999987521 122 34677 8999998888764
No 326
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.70 E-value=0.034 Score=51.43 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=24.2
Q ss_pred CEEEEEecCchHHHHHHHhccC----------CCEEEEEc
Q 024297 154 KTVFILGFGNIGVELAKRLRPF----------GVKIIATK 183 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~----------G~~V~~~~ 183 (269)
-+|+|+|+|.||+.+++.+... +.+|.++.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~ 42 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIA 42 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEE
Confidence 3799999999999999998754 57766553
No 327
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.68 E-value=0.016 Score=55.87 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=34.9
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
..+.+++|.|+|+|..|+++|+.|...|++|+++|++.
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 45788999999999999999999999999999999754
No 328
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=95.65 E-value=0.029 Score=51.89 Aligned_cols=94 Identities=26% Similarity=0.191 Sum_probs=53.2
Q ss_pred CEEEEEec-CchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHH-HHhhCCEEE
Q 024297 154 KTVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE-FASKADVVV 230 (269)
Q Consensus 154 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDvvv 230 (269)
.+|+|+|. |.+|+.+++.|... ++++.++.+........... ++ ....... ....++++ ...++|+|+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~-----~~--~~~~~~~--~~~~~~~~~~~~~vD~Vf 73 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDV-----HP--HLRGLVD--LVLEPLDPEILAGADVVF 73 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHh-----Cc--ccccccC--ceeecCCHHHhcCCCEEE
Confidence 58999996 99999999999987 78876654422111000000 00 0000000 01122222 457899999
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+|+|.. . ..+......+.|..+|+.+
T Consensus 74 ~alP~~-~-----~~~~v~~a~~aG~~VID~S 99 (343)
T PRK00436 74 LALPHG-V-----SMDLAPQLLEAGVKVIDLS 99 (343)
T ss_pred ECCCcH-H-----HHHHHHHHHhCCCEEEECC
Confidence 999842 2 2333331446789999887
No 329
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.65 E-value=0.054 Score=49.48 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=30.1
Q ss_pred CCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCC
Q 024297 153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWAS 188 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~ 188 (269)
..||+|||.|.+|..+|..+...|. ++..+|.+.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~ 40 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDK 40 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccH
Confidence 4599999999999999998876554 79999987643
No 330
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.63 E-value=0.011 Score=55.59 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=63.7
Q ss_pred CCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccc---------------
Q 024297 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGII--------------- 206 (269)
Q Consensus 143 w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 206 (269)
|.......|.+++|.|+|.|.+|..+|+.|...|. +++.+|...-.. .....+ +.+...++
T Consensus 32 ~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~-sNL~Rq--~l~~~~diG~~Ka~~a~~~l~~~ 108 (392)
T PRK07878 32 VGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDE-SNLQRQ--VIHGQSDVGRSKAQSARDSIVEI 108 (392)
T ss_pred cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecC-cccccc--cccChhcCCChHHHHHHHHHHHh
Confidence 54444467999999999999999999999999998 699988543211 000000 00000000
Q ss_pred -c--cc--ccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297 207 -D--DL--VDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS 249 (269)
Q Consensus 207 -~--~~--~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~ 249 (269)
+ .. ........+..++++++|+|+.+.- +.+++.++|+...+
T Consensus 109 np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~ 155 (392)
T PRK07878 109 NPLVNVRLHEFRLDPSNAVELFSQYDLILDGTD-NFATRYLVNDAAVL 155 (392)
T ss_pred CCCcEEEEEeccCChhHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHH
Confidence 0 00 0001122346788999999988764 66788888876554
No 331
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=95.63 E-value=0.0047 Score=54.80 Aligned_cols=77 Identities=23% Similarity=0.272 Sum_probs=44.1
Q ss_pred HHHHhccCC--CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCH
Q 024297 168 LAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSS 245 (269)
Q Consensus 168 ~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~ 245 (269)
+|+.|+..| .+|+++|++..... .+...|.++.. ..+ .+.++++|+|++|+|.. .+..++.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~--------~a~~~g~~~~~------~~~-~~~~~~~DlvvlavP~~-~~~~~l~~ 64 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLE--------AALELGIIDEA------STD-IEAVEDADLVVLAVPVS-AIEDVLEE 64 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHH--------HHHHTTSSSEE------ESH-HHHGGCCSEEEE-S-HH-HHHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHH--------HHHHCCCeeec------cCC-HhHhcCCCEEEEcCCHH-HHHHHHHH
Confidence 466667666 89999998765421 11122221111 123 57899999999999944 45555443
Q ss_pred HHHhhhCCCCcEEEEcc
Q 024297 246 SLSSKSMFFATYVVFMF 262 (269)
Q Consensus 246 ~~l~~~mk~ga~lIN~~ 262 (269)
... .+++|+++++++
T Consensus 65 -~~~-~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 65 -IAP-YLKPGAIVTDVG 79 (258)
T ss_dssp -HHC-GS-TTSEEEE--
T ss_pred -hhh-hcCCCcEEEEeC
Confidence 445 789999999986
No 332
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.62 E-value=0.013 Score=50.89 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=36.1
Q ss_pred cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
.-.+.|++|.|||.|.+|..=++.|..+|++|+++.+...+
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~ 60 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSK 60 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCH
Confidence 35678999999999999999999999999999999976544
No 333
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.59 E-value=0.031 Score=58.54 Aligned_cols=111 Identities=14% Similarity=0.009 Sum_probs=67.5
Q ss_pred cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccc---cccc-------------hhhhcccccccccc--
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSS-------------ALAVKNGIIDDLVD-- 211 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~---~~~~-------------~~~~~~~~~~~~~~-- 211 (269)
.+.-.++.|+|.|++|+..++.+..+|++ . +++..-+..... .... ...+.+++....++
T Consensus 200 gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~ 277 (1042)
T PLN02819 200 GICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA 277 (1042)
T ss_pred CCCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence 34457899999999999999999999888 2 332211100000 0000 00000000000000
Q ss_pred cc----CCC--CCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCc----EEEEcc
Q 024297 212 EK----GCH--EDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFAT----YVVFMF 262 (269)
Q Consensus 212 ~~----~~~--~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga----~lIN~~ 262 (269)
++ ..+ .-+++.++.+|+||.++-..+.+-.+++++.+.+.||+|+ ++++++
T Consensus 278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 00 011 1256789999999999988888899999994443899998 888876
No 334
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.57 E-value=0.0092 Score=59.30 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=59.4
Q ss_pred CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCEEEE
Q 024297 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADVVVC 231 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDvvv~ 231 (269)
...|.|+|+|++|+.+++.|...|.+++++|.+++.-..... .++.+-.| +..+.+-|+++ +.+||.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~g~~v~~G-------Dat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK--YGYKVYYG-------DATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--CCCeEEEe-------eCCCHHHHHhcCCccCCEEEE
Confidence 357889999999999999999999999999987654211110 01101111 11111223322 568999999
Q ss_pred ecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
+.+..+++..++. ..+ .+.|...+|--+|
T Consensus 471 ~~~d~~~n~~i~~--~~r-~~~p~~~IiaRa~ 499 (601)
T PRK03659 471 TCNEPEDTMKIVE--LCQ-QHFPHLHILARAR 499 (601)
T ss_pred EeCCHHHHHHHHH--HHH-HHCCCCeEEEEeC
Confidence 9986655444322 333 4556655554433
No 335
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.57 E-value=0.03 Score=51.39 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=32.6
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 188 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~ 188 (269)
+..+||+|||.|.+|..+|..+...|. +|..+|.+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 345799999999999999999887774 89999987764
No 336
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=95.56 E-value=0.028 Score=47.38 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=52.3
Q ss_pred CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297 154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (269)
Q Consensus 154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~ 232 (269)
++|+||| -|.+|..+++-++.-|.+|+++-|++.+-..-. +. .-...+..+.+++.+.+...|+||.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~----~~-------~i~q~Difd~~~~a~~l~g~DaVIsA 69 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQ----GV-------TILQKDIFDLTSLASDLAGHDAVISA 69 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccc----cc-------eeecccccChhhhHhhhcCCceEEEe
Confidence 5899999 699999999999999999999999887632100 00 00111222456777899999999998
Q ss_pred cCCC
Q 024297 233 LSLN 236 (269)
Q Consensus 233 lp~t 236 (269)
.-..
T Consensus 70 ~~~~ 73 (211)
T COG2910 70 FGAG 73 (211)
T ss_pred ccCC
Confidence 6543
No 337
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=95.55 E-value=0.13 Score=49.09 Aligned_cols=97 Identities=18% Similarity=0.111 Sum_probs=64.2
Q ss_pred cccccCCEEEEEec----------CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCC
Q 024297 148 GETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE 217 (269)
Q Consensus 148 ~~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (269)
+.++.|++|+|+|+ .+-+..+++.|...|.+|.+||+...... .....+ ..
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~------------------~~~~~~-~~ 369 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEE------------------VRREYG-II 369 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhH------------------HHHhcC-cc
Confidence 45689999999997 67899999999999999999998643210 000111 11
Q ss_pred CHHH-HHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297 218 DIFE-FASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG 266 (269)
Q Consensus 218 ~l~e-ll~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~ 266 (269)
.+++ .+..+|+|+++.... +.+. ++.+.+.+.|+...++|+ +|+-+
T Consensus 370 ~~~~~~~~~ad~vvi~t~h~-~f~~-~~~~~~~~~~~~~~~iiD-~r~~~ 416 (425)
T PRK15182 370 PVSEVKSSHYDAIIVAVGHQ-QFKQ-MGSEDIRGFGKDKHVLYD-LKYVL 416 (425)
T ss_pred cchhhhhcCCCEEEEccCCH-Hhhc-CCHHHHHHhcCCCCEEEE-CCCCC
Confidence 1222 367899999998744 3333 455566535665568887 46643
No 338
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.52 E-value=0.011 Score=52.40 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=45.7
Q ss_pred EEEEec-CchHHHHHHHhccCC----CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297 156 VFILGF-GNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 156 vgIiG~-G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv 230 (269)
|+|||. |.+|..+|..+...| .+|..+|.+..........-..+..+. ........+++.+.+++||+|+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-----~~~~i~~~~d~~~~~~~aDiVv 75 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-----ADIKVSITDDPYEAFKDADVVI 75 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-----cCcEEEECCchHHHhCCCCEEE
Confidence 589999 999999999988777 789999987644211110000000000 0000112356788999999999
Q ss_pred Eec
Q 024297 231 CCL 233 (269)
Q Consensus 231 ~~l 233 (269)
.+.
T Consensus 76 ~t~ 78 (263)
T cd00650 76 ITA 78 (263)
T ss_pred ECC
Confidence 975
No 339
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.52 E-value=0.012 Score=53.47 Aligned_cols=33 Identities=33% Similarity=0.363 Sum_probs=30.7
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
++|+|+|.|.||.-+|-+|...|.+|+.++|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 479999999999999999999999999999864
No 340
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.50 E-value=0.029 Score=51.42 Aligned_cols=91 Identities=12% Similarity=0.044 Sum_probs=57.0
Q ss_pred cCCEEEEEecCchHHHHHHHhcc-CC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCC
Q 024297 152 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KAD 227 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~-~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aD 227 (269)
.|.+|.|+|.|.+|..+++.++. +| .+|++++++..+... ....+....++++.. ..|
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~------------------a~~~~~~~~~~~~~~~~g~d 224 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDL------------------FSFADETYLIDDIPEDLAVD 224 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHH------------------HhhcCceeehhhhhhccCCc
Confidence 57899999999999999999885 54 689999987544211 111110011112222 379
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
+|+-++... .+...+ .+.++ .++++..++.+|-
T Consensus 225 ~viD~~G~~-~~~~~~-~~~~~-~l~~~G~iv~~G~ 257 (341)
T cd08237 225 HAFECVGGR-GSQSAI-NQIID-YIRPQGTIGLMGV 257 (341)
T ss_pred EEEECCCCC-ccHHHH-HHHHH-hCcCCcEEEEEee
Confidence 998887521 111222 33677 8999998888763
No 341
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=95.50 E-value=0.17 Score=49.74 Aligned_cols=134 Identities=12% Similarity=0.112 Sum_probs=88.8
Q ss_pred CCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhcc---
Q 024297 98 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRP--- 174 (269)
Q Consensus 98 ~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~--- 174 (269)
..|.+.|.- -..+|--+++.+|+.+|- .++.|.+.+|.|+|.|..|-.+|+.+..
T Consensus 288 ~~i~~FnDD------iQGTaaV~lAgll~A~r~----------------~g~~l~d~riv~~GAGsAgigia~ll~~~~~ 345 (581)
T PLN03129 288 TTHLCFNDD------IQGTAAVALAGLLAALRA----------------TGGDLADQRILFAGAGEAGTGIAELIALAMS 345 (581)
T ss_pred cCCCEeccc------cchHHHHHHHHHHHHHHH----------------hCCchhhceEEEECCCHHHHHHHHHHHHHHH
Confidence 356665542 244677888888888885 3678999999999999999999998886
Q ss_pred --CCC-------EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh--CCEEEEecCCCccccCcC
Q 024297 175 --FGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQTVKLC 243 (269)
Q Consensus 175 --~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDvvv~~lp~t~~t~~li 243 (269)
.|. +++.+|+..--.....+.-.++- ...........+|.++++. .|+++-+-- .-+.|
T Consensus 346 ~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k------~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~F 415 (581)
T PLN03129 346 RQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFK------KPFAHDHEPGASLLEAVKAIKPTVLIGLSG----VGGTF 415 (581)
T ss_pred hhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHH------HHHHhhcccCCCHHHHHhccCCCEEEEecC----CCCCC
Confidence 476 79999976532111000000000 0111111134689999998 898887631 23799
Q ss_pred CHHHHhhhCC---CCcEEEEccCC
Q 024297 244 SSSLSSKSMF---FATYVVFMFQG 264 (269)
Q Consensus 244 ~~~~l~~~mk---~ga~lIN~~RG 264 (269)
+++.++ .|. +..++.=.|..
T Consensus 416 t~evi~-~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 416 TKEVLE-AMASLNERPIIFALSNP 438 (581)
T ss_pred CHHHHH-HHHhcCCCCEEEECCCC
Confidence 999999 995 67777666544
No 342
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.48 E-value=0.021 Score=55.03 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=33.1
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
+.|++|+|+|+|.-|+++|+.|...|++|+++|...
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 468999999999999999999999999999999543
No 343
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=95.48 E-value=0.024 Score=46.10 Aligned_cols=84 Identities=21% Similarity=0.127 Sum_probs=54.3
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv 230 (269)
..+++|++||+= +.+++.++..+.+|.++|+++...... .... .....++++++||+|+
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~--------------~~~~----~~~~~~~~l~~aD~vi 67 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEE--------------PGDV----PDEDAEEILPWADVVI 67 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SS--------------CT-E----EGGGHHHHGGG-SEEE
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCC--------------CCcC----CHHHHHHHHccCCEEE
Confidence 578999999951 237788888999999999876431000 0000 2356789999999999
Q ss_pred EecCCCccccCcCC---HHHHhhhCCCCcEEEEcc
Q 024297 231 CCLSLNKQTVKLCS---SSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 231 ~~lp~t~~t~~li~---~~~l~~~mk~ga~lIN~~ 262 (269)
++-. .++| .+.++ ..++++.+|=+|
T Consensus 68 iTGs------TlvN~Ti~~iL~-~~~~~~~vil~G 95 (147)
T PF04016_consen 68 ITGS------TLVNGTIDDILE-LARNAREVILYG 95 (147)
T ss_dssp EECH------HCCTTTHHHHHH-HTTTSSEEEEES
T ss_pred EEee------eeecCCHHHHHH-hCccCCeEEEEe
Confidence 9853 2333 23677 777777776554
No 344
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.47 E-value=0.022 Score=51.46 Aligned_cols=87 Identities=11% Similarity=-0.010 Sum_probs=53.5
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv 230 (269)
.++++.|+|.|.+|..+++.++.+|++ |.+++++..+ .... ......+.-++.-...|+++
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~r-l~~a-----------------~~~~~i~~~~~~~~g~Dvvi 205 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRR-RDGA-----------------TGYEVLDPEKDPRRDYRAIY 205 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHH-HHhh-----------------hhccccChhhccCCCCCEEE
Confidence 467899999999999999999999997 5556554322 1100 00000000001113578888
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
-+.... ..+ ...++ .++++..++.+|
T Consensus 206 d~~G~~----~~~-~~~~~-~l~~~G~iv~~G 231 (308)
T TIGR01202 206 DASGDP----SLI-DTLVR-RLAKGGEIVLAG 231 (308)
T ss_pred ECCCCH----HHH-HHHHH-hhhcCcEEEEEe
Confidence 876521 122 33677 889999888776
No 345
>PRK08223 hypothetical protein; Validated
Probab=95.44 E-value=0.013 Score=52.89 Aligned_cols=102 Identities=17% Similarity=0.108 Sum_probs=61.9
Q ss_pred ccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhh------------------cccccc
Q 024297 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAV------------------KNGIID 207 (269)
Q Consensus 147 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~ 207 (269)
....|++++|.|+|+|.+|..+++.|...|. ++..+|...-.. .....+.-+.. .+..--
T Consensus 21 ~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~-SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V 99 (287)
T PRK08223 21 EQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFEL-RNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEI 99 (287)
T ss_pred HHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcch-hccccccCcChhHCCCcHHHHHHHHHHHHCCCCEE
Confidence 3467999999999999999999999999998 688888532211 10000000000 000000
Q ss_pred ccccccCCCCCHHHHHhhCCEEEEecCCC-ccccCcCCHHHHh
Q 024297 208 DLVDEKGCHEDIFEFASKADVVVCCLSLN-KQTVKLCSSSLSS 249 (269)
Q Consensus 208 ~~~~~~~~~~~l~ell~~aDvvv~~lp~t-~~t~~li~~~~l~ 249 (269)
.......+.++++++++++|+|+-++..- -+++.+++..-..
T Consensus 100 ~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~ 142 (287)
T PRK08223 100 RAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQ 142 (287)
T ss_pred EEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 00011113456889999999999777531 2677887775444
No 346
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.42 E-value=0.011 Score=58.11 Aligned_cols=81 Identities=11% Similarity=0.235 Sum_probs=49.9
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHH-HHhhCCEEEEe
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE-FASKADVVVCC 232 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDvvv~~ 232 (269)
..+.|+|+|++|+.+++.|+..|.+|+++|.++++.....+ .++. ....+..+.+.+++ -++++|.++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--~g~~-------~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--RGIR-------AVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--CCCe-------EEEcCCCCHHHHHhcCccccCEEEEE
Confidence 45679999999999999999999999999987654211110 0110 11111111112222 14689999999
Q ss_pred cCCCccccCcC
Q 024297 233 LSLNKQTVKLC 243 (269)
Q Consensus 233 lp~t~~t~~li 243 (269)
.+...++..++
T Consensus 489 ~~~~~~~~~iv 499 (558)
T PRK10669 489 IPNGYEAGEIV 499 (558)
T ss_pred cCChHHHHHHH
Confidence 88665544443
No 347
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=95.41 E-value=0.034 Score=51.43 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=60.6
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~ 231 (269)
.|++|.|.|.|.+|+.+++.++.+|.+|++++.+..+....... -| ++..+.. ...+.+.++....|+++-
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~-------~G-a~~vi~~-~~~~~~~~~~~~~D~vid 253 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINR-------LG-ADSFLVS-TDPEKMKAAIGTMDYIID 253 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHh-------CC-CcEEEcC-CCHHHHHhhcCCCCEEEE
Confidence 57899999999999999999999999998887655432111000 00 0011100 011234444445799998
Q ss_pred ecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
+... +. .+ .+.++ .++++..++.+|.
T Consensus 254 ~~g~-~~---~~-~~~~~-~l~~~G~iv~vG~ 279 (360)
T PLN02586 254 TVSA-VH---AL-GPLLG-LLKVNGKLITLGL 279 (360)
T ss_pred CCCC-HH---HH-HHHHH-HhcCCcEEEEeCC
Confidence 7641 11 22 23677 8999999998874
No 348
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.39 E-value=0.046 Score=51.90 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=53.7
Q ss_pred cccccCCEEEEEec----------CchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCC
Q 024297 148 GETLLGKTVFILGF----------GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH 216 (269)
Q Consensus 148 ~~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (269)
+.++.+++|+|+|+ .+-+..+++.|+..| ++|.+||+...... .........
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~-----------------~~~~~~~~~ 377 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLP-----------------KKLDGLVTL 377 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchh-----------------hhccCceee
Confidence 46789999999997 668889999999996 99999998643210 000000123
Q ss_pred CCHHHHHhhCCEEEEecCCC
Q 024297 217 EDIFEFASKADVVVCCLSLN 236 (269)
Q Consensus 217 ~~l~ell~~aDvvv~~lp~t 236 (269)
.+++++++.||+|+++.+..
T Consensus 378 ~~~~~~~~~ad~vvi~t~~~ 397 (415)
T PRK11064 378 VSLDEALATADVLVMLVDHS 397 (415)
T ss_pred CCHHHHHhCCCEEEECCCCH
Confidence 67889999999999998744
No 349
>PRK13529 malate dehydrogenase; Provisional
Probab=95.38 E-value=0.51 Score=46.33 Aligned_cols=163 Identities=16% Similarity=0.139 Sum_probs=100.6
Q ss_pred CCCceEEEEccccCCc-cchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCcccccc
Q 024297 74 ANQMKLIMQFGVGLEG-VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL 152 (269)
Q Consensus 74 ~~~Lk~I~~~~aG~d~-id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~ 152 (269)
.|+. +|+.=--+..+ +.+..-.+..|.+.|.-= ..+|--+++.+|+.+|- .++.+.
T Consensus 238 ~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDi------QGTaaV~LAgll~A~r~----------------~g~~l~ 294 (563)
T PRK13529 238 FPNA-LLQFEDFAQKNARRILERYRDEICTFNDDI------QGTGAVTLAGLLAALKI----------------TGEPLS 294 (563)
T ss_pred CCCe-EEehhhcCCchHHHHHHHhccCCCeecccc------chHHHHHHHHHHHHHHH----------------hCCChh
Confidence 4554 55544333332 232222344677777532 44777899999999985 367899
Q ss_pred CCEEEEEecCchHHHHHHHhcc----CCC-------EEEEEcCCCCCccc---cccccchhhhccccccccccccCCCCC
Q 024297 153 GKTVFILGFGNIGVELAKRLRP----FGV-------KIIATKRSWASHSQ---VSCQSSALAVKNGIIDDLVDEKGCHED 218 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~----~G~-------~V~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (269)
+.++.|+|.|+.|-.+|+.+.. .|. +++.+|+..--... .......|+-.+...... .......+
T Consensus 295 d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~-~~~~~~~~ 373 (563)
T PRK13529 295 DQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADW-DTEGDVIS 373 (563)
T ss_pred hcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhccccccc-ccccCCCC
Confidence 9999999999999999999886 587 79999976421110 001111111111000000 00012257
Q ss_pred HHHHHhhC--CEEEEecCCCccccCcCCHHHHhhhCCC---CcEEEEccCCC
Q 024297 219 IFEFASKA--DVVVCCLSLNKQTVKLCSSSLSSKSMFF---ATYVVFMFQGH 265 (269)
Q Consensus 219 l~ell~~a--Dvvv~~lp~t~~t~~li~~~~l~~~mk~---ga~lIN~~RG~ 265 (269)
|.++++.+ |+++-+- ..-+.|+++.++ .|.+ ..++.=.|...
T Consensus 374 L~e~v~~~kPtvLIG~S----~~~g~Ft~evv~-~Ma~~~erPIIFaLSNPt 420 (563)
T PRK13529 374 LLEVVRNVKPTVLIGVS----GQPGAFTEEIVK-EMAAHCERPIIFPLSNPT 420 (563)
T ss_pred HHHHHhccCCCEEEEec----CCCCCCCHHHHH-HHHhcCCCCEEEECCCcC
Confidence 99999988 9888763 224899999999 9887 67776666543
No 350
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.35 E-value=0.013 Score=53.08 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=27.7
Q ss_pred EEEEecCchHHHHHHHhccCCC-EEEEEcCCCC
Q 024297 156 VFILGFGNIGVELAKRLRPFGV-KIIATKRSWA 187 (269)
Q Consensus 156 vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~ 187 (269)
|+|||.|.+|..+|..+...|. +|+.+|++.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 6899999999999998886554 9999998754
No 351
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.34 E-value=0.0081 Score=46.01 Aligned_cols=33 Identities=33% Similarity=0.671 Sum_probs=28.2
Q ss_pred EEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 156 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
|.|+|+|.+|+.+++.|+..+.+|++++.++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~ 33 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPER 33 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHH
Confidence 579999999999999999977799999987644
No 352
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.33 E-value=0.028 Score=50.94 Aligned_cols=72 Identities=11% Similarity=0.188 Sum_probs=48.2
Q ss_pred CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297 154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (269)
Q Consensus 154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~ 232 (269)
++|.|.| .|.+|+.+++.|...|++|.+..|+..+..... ..+ +.-...+.....++.+++..+|+|+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~--------~~~-v~~v~~Dl~d~~~l~~al~g~d~Vi~~ 71 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK--------EWG-AELVYGDLSLPETLPPSFKGVTAIIDA 71 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh--------hcC-CEEEECCCCCHHHHHHHHCCCCEEEEC
Confidence 3789999 699999999999999999999998754311000 000 011111122345688889999998876
Q ss_pred cC
Q 024297 233 LS 234 (269)
Q Consensus 233 lp 234 (269)
.+
T Consensus 72 ~~ 73 (317)
T CHL00194 72 ST 73 (317)
T ss_pred CC
Confidence 54
No 353
>PLN00106 malate dehydrogenase
Probab=95.33 E-value=0.055 Score=49.68 Aligned_cols=76 Identities=16% Similarity=0.054 Sum_probs=47.8
Q ss_pred cCCEEEEEec-CchHHHHHHHhccCC--CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297 152 LGKTVFILGF-GNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 152 ~g~~vgIiG~-G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
..+||+|+|. |++|..+|..|...+ -++..+|++... ....+. .+.............+++.+.++.||+
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g~a~Dl------~~~~~~~~i~~~~~~~d~~~~l~~aDi 89 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-GVAADV------SHINTPAQVRGFLGDDQLGDALKGADL 89 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-eeEchh------hhCCcCceEEEEeCCCCHHHHcCCCCE
Confidence 4469999999 999999999988544 489999986621 111110 000000011111123567889999999
Q ss_pred EEEecC
Q 024297 229 VVCCLS 234 (269)
Q Consensus 229 vv~~lp 234 (269)
|+.+.-
T Consensus 90 VVitAG 95 (323)
T PLN00106 90 VIIPAG 95 (323)
T ss_pred EEEeCC
Confidence 999854
No 354
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.31 E-value=0.041 Score=48.84 Aligned_cols=70 Identities=14% Similarity=0.054 Sum_probs=48.2
Q ss_pred EEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH------hh-C
Q 024297 155 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA------SK-A 226 (269)
Q Consensus 155 ~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~-a 226 (269)
+|.|+|. |.+|+.+++.|...|.+|.+..|++++.... + +.....+..+.+++.+++ .. +
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~-----------~-~~~~~~d~~d~~~l~~a~~~~~~~~g~~ 68 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGP-----------N-EKHVKFDWLDEDTWDNPFSSDDGMEPEI 68 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCC-----------C-CccccccCCCHHHHHHHHhcccCcCCce
Confidence 4778886 9999999999999999999999987542110 0 011111222445677777 44 8
Q ss_pred CEEEEecCCC
Q 024297 227 DVVVCCLSLN 236 (269)
Q Consensus 227 Dvvv~~lp~t 236 (269)
|.|+++.|..
T Consensus 69 d~v~~~~~~~ 78 (285)
T TIGR03649 69 SAVYLVAPPI 78 (285)
T ss_pred eEEEEeCCCC
Confidence 9999887754
No 355
>PRK11579 putative oxidoreductase; Provisional
Probab=95.28 E-value=0.031 Score=51.52 Aligned_cols=65 Identities=12% Similarity=0.076 Sum_probs=42.2
Q ss_pred CEEEEEecCchHHH-HHHHhcc-CCCEEEE-EcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCCE
Q 024297 154 KTVFILGFGNIGVE-LAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV 228 (269)
Q Consensus 154 ~~vgIiG~G~iG~~-~a~~l~~-~G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDv 228 (269)
-+|||||+|.||+. .+..++. -+++|.+ +|++..+. . ........+.+++++++ +.|+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~-~----------------~~~~~~~~~~~~~ell~~~~vD~ 67 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKV-K----------------ADWPTVTVVSEPQHLFNDPNIDL 67 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHH-H----------------hhCCCCceeCCHHHHhcCCCCCE
Confidence 48999999999984 5665554 4788775 45443220 0 00000113478999996 5799
Q ss_pred EEEecCC
Q 024297 229 VVCCLSL 235 (269)
Q Consensus 229 vv~~lp~ 235 (269)
|+++.|.
T Consensus 68 V~I~tp~ 74 (346)
T PRK11579 68 IVIPTPN 74 (346)
T ss_pred EEEcCCc
Confidence 9999884
No 356
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.27 E-value=0.068 Score=46.10 Aligned_cols=98 Identities=24% Similarity=0.246 Sum_probs=61.2
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-----Hhh
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-----ASK 225 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----l~~ 225 (269)
..|++|.|+|.|.+|+.+++.++..|.+|++++++..+..... ..| ....... ...+..+. -..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~--------~~g-~~~~~~~--~~~~~~~~~~~~~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK--------ELG-ADHVIDY--KEEDLEEELRLTGGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH--------HhC-CceeccC--CcCCHHHHHHHhcCCC
Confidence 4678999999999999999999999999999987653311100 000 0011110 01112221 246
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
.|+++.+++.. -.-...++ .|+++..+++++...
T Consensus 202 ~d~vi~~~~~~-----~~~~~~~~-~l~~~G~~v~~~~~~ 235 (271)
T cd05188 202 ADVVIDAVGGP-----ETLAQALR-LLRPGGRIVVVGGTS 235 (271)
T ss_pred CCEEEECCCCH-----HHHHHHHH-hcccCCEEEEEccCC
Confidence 89999887632 11234567 899999999887543
No 357
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.24 E-value=0.022 Score=54.17 Aligned_cols=78 Identities=15% Similarity=0.036 Sum_probs=46.4
Q ss_pred CEEEEEecCchHHHHHH---Hh---ccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297 154 KTVFILGFGNIGVELAK---RL---RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~---~l---~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (269)
.+|+|||.|++|...+- .+ ...|.+|..+|++.......... .....+... .........++.+.++.||
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~-~~~~~~~~~---~~~~I~~ttD~~eal~~AD 76 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEIL-AKKIVEELG---APLKIEATTDRREALDGAD 76 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcC---CCeEEEEeCCHHHHhcCCC
Confidence 37999999999998554 32 34478999999876542111000 000000000 0001112367899999999
Q ss_pred EEEEecCC
Q 024297 228 VVVCCLSL 235 (269)
Q Consensus 228 vvv~~lp~ 235 (269)
+|+.+.|.
T Consensus 77 ~Vi~ai~~ 84 (423)
T cd05297 77 FVINTIQV 84 (423)
T ss_pred EEEEeeEe
Confidence 99999983
No 358
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.23 E-value=0.015 Score=60.90 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=47.6
Q ss_pred cCCEEEEEecCchHHHHHHHhccC-CCE-------------EEEEcCCCCCccccccccchhhhccccccccccccCCCC
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPF-GVK-------------IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE 217 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~-G~~-------------V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (269)
..|+|+|||.|.||+.+|+.|... +.+ |.+.|++.......... ++ + +....-.....+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~-----~~-~-~~~v~lDv~D~e 640 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEG-----IE-N-AEAVQLDVSDSE 640 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHh-----cC-C-CceEEeecCCHH
Confidence 477999999999999999999754 334 88888776442111000 00 0 000000111234
Q ss_pred CHHHHHhhCCEEEEecCC
Q 024297 218 DIFEFASKADVVVCCLSL 235 (269)
Q Consensus 218 ~l~ell~~aDvvv~~lp~ 235 (269)
++.++++++|+|++++|.
T Consensus 641 ~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 641 SLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred HHHHhhcCCCEEEECCCc
Confidence 566666789999999995
No 359
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.23 E-value=0.063 Score=46.30 Aligned_cols=37 Identities=32% Similarity=0.445 Sum_probs=33.0
Q ss_pred cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCC
Q 024297 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
.+.++++.|.|. |.||+.+++.|...|++|+++.|+.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367899999996 9999999999999999999988764
No 360
>PRK06128 oxidoreductase; Provisional
Probab=95.19 E-value=0.058 Score=48.45 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=32.2
Q ss_pred cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCC
Q 024297 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
.+.||++.|.|. |.||+++|+.|...|++|++..+..
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~ 89 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPE 89 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCc
Confidence 478999999995 8999999999999999998876543
No 361
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.16 E-value=0.015 Score=57.95 Aligned_cols=96 Identities=20% Similarity=0.211 Sum_probs=56.9
Q ss_pred CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHH-HHHhhCCEEEE
Q 024297 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF-EFASKADVVVC 231 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-ell~~aDvvv~ 231 (269)
..+|.|+|+|++|+.+++.|...|.+++++|.+++.-..... .++.+-.|+ ..+.+-|+ .=++++|.+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~g~~v~~GD-------at~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK--FGMKVFYGD-------ATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--cCCeEEEEe-------CCCHHHHHhcCCCcCCEEEE
Confidence 467889999999999999999999999999987654211110 011111111 11111222 12458999999
Q ss_pred ecCCCccccCcCCHHHHhhhCCCCcEEEE
Q 024297 232 CLSLNKQTVKLCSSSLSSKSMFFATYVVF 260 (269)
Q Consensus 232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN 260 (269)
+.+..+.+..++ ...+ .+.|+..++-
T Consensus 471 ~~~d~~~n~~i~--~~ar-~~~p~~~iia 496 (621)
T PRK03562 471 AIDDPQTSLQLV--ELVK-EHFPHLQIIA 496 (621)
T ss_pred EeCCHHHHHHHH--HHHH-HhCCCCeEEE
Confidence 987555443332 2333 4555554443
No 362
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.13 E-value=0.017 Score=49.70 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=50.1
Q ss_pred EEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecC
Q 024297 156 VFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS 234 (269)
Q Consensus 156 vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp 234 (269)
|.|+|. |.+|+.+++.|..-|++|.+..|+..+..... +.+-++.-...++.+.++|.++++.+|.|+++.|
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~-------l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQ-------LQALGAEVVEADYDDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHH-------HHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhh-------hhcccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence 678995 99999999999999999999998764311100 0100111111222245678899999999999998
Q ss_pred CC
Q 024297 235 LN 236 (269)
Q Consensus 235 ~t 236 (269)
..
T Consensus 74 ~~ 75 (233)
T PF05368_consen 74 PS 75 (233)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 363
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.08 E-value=0.017 Score=49.19 Aligned_cols=43 Identities=21% Similarity=0.440 Sum_probs=38.1
Q ss_pred CCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCC
Q 024297 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (269)
Q Consensus 143 w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 185 (269)
|.......|.+++|.|+|.|.+|.++++.|...|. +++.+|..
T Consensus 11 ~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 11 WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 66555678999999999999999999999999999 59999864
No 364
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.03 E-value=0.052 Score=52.12 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=30.7
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~ 185 (269)
-.|++|+|+|+|.-|+++++.|+. |++|+++|..
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 357899999999999999999995 9999999954
No 365
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.02 E-value=0.075 Score=48.27 Aligned_cols=88 Identities=19% Similarity=0.104 Sum_probs=53.7
Q ss_pred CCEEEEEecCchHHHHHHHhcc-CCCEEEE-EcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHh---
Q 024297 153 GKTVFILGFGNIGVELAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--- 224 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~-~G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--- 224 (269)
..++||||.|+||+..+..+.. -++++.+ +++++.+... ....+++ .+.++++++.
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gl----------------a~A~~~Gi~~~~~~ie~LL~~~~ 67 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGL----------------ARARRLGVATSAEGIDGLLAMPE 67 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHH----------------HHHHHcCCCcccCCHHHHHhCcC
Confidence 4689999999999997766664 4677664 4444332100 0112222 2367888885
Q ss_pred --hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 225 --KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 225 --~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+.|+|+.+.|.. .| .+...+..+.|..+|+-.
T Consensus 68 ~~dIDiVf~AT~a~---~H---~e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 68 FDDIDIVFDATSAG---AH---VRHAAKLREAGIRAIDLT 101 (302)
T ss_pred CCCCCEEEECCCHH---HH---HHHHHHHHHcCCeEEECC
Confidence 578899997632 12 333332567788777765
No 366
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.01 E-value=0.012 Score=47.46 Aligned_cols=75 Identities=21% Similarity=0.178 Sum_probs=45.0
Q ss_pred CEEEEEec-CchHHHHHHHhcc--CCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297 154 KTVFILGF-GNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 154 ~~vgIiG~-G~iG~~~a~~l~~--~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv 230 (269)
.+|+|||. |.+|+.+|..|.. ++-++..+|++..........-++...+.. ....-.....+.+++||+|+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~------~~~~i~~~~~~~~~~aDivv 74 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLP------SPVRITSGDYEALKDADIVV 74 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGST------EEEEEEESSGGGGTTESEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcc------cccccccccccccccccEEE
Confidence 38999999 9999999998884 556899999874431110000000000000 00001124556789999999
Q ss_pred EecC
Q 024297 231 CCLS 234 (269)
Q Consensus 231 ~~lp 234 (269)
++.-
T Consensus 75 itag 78 (141)
T PF00056_consen 75 ITAG 78 (141)
T ss_dssp ETTS
T ss_pred Eecc
Confidence 9974
No 367
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.01 E-value=0.09 Score=47.94 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=52.7
Q ss_pred EEEEEe-cCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297 155 TVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (269)
Q Consensus 155 ~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~ 232 (269)
+|+|+| -|-+|.++.++|... .+++......... ...+.+++++++|+++++
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~--------------------------~~~~~~~~~~~~D~vFla 56 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK--------------------------DAAERAKLLNAADVAILC 56 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc--------------------------CcCCHhHhhcCCCEEEEC
Confidence 799999 799999999999987 5576666422110 112455777899999999
Q ss_pred cCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+|.. . ..+...+..+.|+.+|+.+
T Consensus 57 lp~~-~-----s~~~~~~~~~~g~~VIDlS 80 (310)
T TIGR01851 57 LPDD-A-----AREAVSLVDNPNTCIIDAS 80 (310)
T ss_pred CCHH-H-----HHHHHHHHHhCCCEEEECC
Confidence 9843 2 3344441335788999887
No 368
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=94.99 E-value=0.059 Score=48.95 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=58.3
Q ss_pred CCEEEEEec-CchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----h
Q 024297 153 GKTVFILGF-GNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K 225 (269)
Q Consensus 153 g~~vgIiG~-G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~ 225 (269)
|.+|.|.|. |.+|+.+++.++.+|+ +|++++++.++....... -| ++..+.. ...++.+.+. .
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~-------lG-a~~vi~~--~~~~~~~~i~~~~~~g 224 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE-------LG-FDAAINY--KTDNVAERLRELCPEG 224 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-------cC-CcEEEEC--CCCCHHHHHHHHCCCC
Confidence 489999998 9999999999999999 899988765432110000 00 0111110 1123333222 4
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
.|+++-++... . + .+.++ .++++..+|.+|
T Consensus 225 vd~vid~~g~~----~-~-~~~~~-~l~~~G~iv~~G 254 (345)
T cd08293 225 VDVYFDNVGGE----I-S-DTVIS-QMNENSHIILCG 254 (345)
T ss_pred ceEEEECCCcH----H-H-HHHHH-HhccCCEEEEEe
Confidence 78888876521 1 2 55678 899999888876
No 369
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.99 E-value=0.036 Score=50.63 Aligned_cols=91 Identities=13% Similarity=0.024 Sum_probs=56.7
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~ 231 (269)
.|.+|.|.|.|.+|+.+++.++.+|++|++++++..+.....+ -| .+... ...+ ..-...|+++.
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~--------~G-a~~vi----~~~~--~~~~~~d~~i~ 229 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA--------LG-AASAG----GAYD--TPPEPLDAAIL 229 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH--------hC-Cceec----cccc--cCcccceEEEE
Confidence 5789999999999999999999999999999877554211100 00 00000 0000 00124677666
Q ss_pred ecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
+... + ..+ ...++ .++++..++.+|-
T Consensus 230 ~~~~-~---~~~-~~~~~-~l~~~G~~v~~G~ 255 (329)
T TIGR02822 230 FAPA-G---GLV-PPALE-ALDRGGVLAVAGI 255 (329)
T ss_pred CCCc-H---HHH-HHHHH-hhCCCcEEEEEec
Confidence 6542 1 122 34677 8999998888774
No 370
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=94.98 E-value=0.36 Score=43.71 Aligned_cols=140 Identities=16% Similarity=0.117 Sum_probs=88.7
Q ss_pred hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEe-cCchHHHHHHHh
Q 024297 94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILG-FGNIGVELAKRL 172 (269)
Q Consensus 94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG-~G~iG~~~a~~l 172 (269)
.++..+|+|.|.=.. .-.++ .+|+-++.+..+. |+ +.|+|+..+| ..+++..+....
T Consensus 116 lA~~s~VPViNgLtD---~~HP~--Q~LADl~Ti~E~~----------------g~-l~g~k~a~vGDgNNv~nSl~~~~ 173 (310)
T COG0078 116 LAKYSGVPVINGLTD---EFHPC--QALADLMTIKEHF----------------GS-LKGLKLAYVGDGNNVANSLLLAA 173 (310)
T ss_pred HHHhCCCceEccccc---ccCcH--HHHHHHHHHHHhc----------------Cc-ccCcEEEEEcCcchHHHHHHHHH
Confidence 356678999996443 22455 4445555554442 23 9999999999 557999999999
Q ss_pred ccCCCEEEEEcCCCCCccccccccc-hhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCC--cccc---------
Q 024297 173 RPFGVKIIATKRSWASHSQVSCQSS-ALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN--KQTV--------- 240 (269)
Q Consensus 173 ~~~G~~V~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t--~~t~--------- 240 (269)
..+||+|....+..-...+...... ..+-.+| .+..-..+..+.++.||||..-+... ++..
T Consensus 174 a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g------~~i~~t~d~~eAv~gADvvyTDvWvSMGee~e~~~~~~~~~ 247 (310)
T COG0078 174 AKLGMDVRIATPKGYEPDPEVVEKAKENAKESG------GKITLTEDPEEAVKGADVVYTDVWVSMGEEAEAEERRIAFL 247 (310)
T ss_pred HHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcC------CeEEEecCHHHHhCCCCEEEecCcccCcchhhhHHHHHhhC
Confidence 9999999999876543211110000 0000011 01112368999999999998875432 1221
Q ss_pred --CcCCHHHHhhhCCCCcEEEEcc
Q 024297 241 --KLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 241 --~li~~~~l~~~mk~ga~lIN~~ 262 (269)
.-+|.+.++ .-+++++|.-+=
T Consensus 248 ~~yQVn~~lm~-~a~~~~ifmHCL 270 (310)
T COG0078 248 PPYQVNEELMA-LAGPDAIFMHCL 270 (310)
T ss_pred CCceeCHHHHh-hcCCCeEEEeCC
Confidence 567888888 888899888763
No 371
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.96 E-value=0.12 Score=47.05 Aligned_cols=33 Identities=30% Similarity=0.279 Sum_probs=28.7
Q ss_pred CEEEEEec-CchHHHHHHHhccCCC--EEEEEcCCC
Q 024297 154 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSW 186 (269)
Q Consensus 154 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~ 186 (269)
++|+|+|. |.+|..++..+...|. +|+.+|+..
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 48999998 9999999999988775 599999854
No 372
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.91 E-value=0.019 Score=54.52 Aligned_cols=38 Identities=37% Similarity=0.335 Sum_probs=34.1
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
+..+++.|+|+|.+|+.+++.|...|.+|++++.+++.
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~ 266 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPER 266 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 45789999999999999999999999999999987653
No 373
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.90 E-value=0.096 Score=48.07 Aligned_cols=79 Identities=20% Similarity=0.085 Sum_probs=47.8
Q ss_pred cccCCEEEEEec-CchHHHHHHHhcc--CCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 150 TLLGKTVFILGF-GNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 150 ~l~g~~vgIiG~-G~iG~~~a~~l~~--~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
-++.++|+|+|. |+||..+|..+.. ...++..+|+.... ....+. . +..............+..+.++.|
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~-g~a~Dl----~--~~~~~~~v~~~td~~~~~~~l~ga 77 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAP-GVAADL----S--HIDTPAKVTGYADGELWEKALRGA 77 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCc-ccccch----h--hcCcCceEEEecCCCchHHHhCCC
Confidence 356779999999 9999999999884 45689999983221 111110 0 000000011111113346889999
Q ss_pred CEEEEecCC
Q 024297 227 DVVVCCLSL 235 (269)
Q Consensus 227 Dvvv~~lp~ 235 (269)
|+|++++-.
T Consensus 78 DvVVitaG~ 86 (321)
T PTZ00325 78 DLVLICAGV 86 (321)
T ss_pred CEEEECCCC
Confidence 999988653
No 374
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.90 E-value=0.036 Score=52.73 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=33.6
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
+.|+++.|+|.|.+|.++|+.|...|++|+++|++.
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 578999999999999999999999999999999754
No 375
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.89 E-value=0.061 Score=49.81 Aligned_cols=94 Identities=13% Similarity=0.084 Sum_probs=57.5
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCC----HHHHHh-h
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED----IFEFAS-K 225 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~ell~-~ 225 (269)
.|.+|.|+|.|.+|+.+++.++..|+ +|++++++..+...... -| ++..+.. ...+ +.++.. .
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~--------~G-a~~~i~~--~~~~~~~~i~~~~~~g 259 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE--------LG-ATATVNA--GDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH--------cC-CceEeCC--CchhHHHHHHHHhCCC
Confidence 57899999999999999999999999 69998876544211100 00 0001110 0112 222222 3
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
.|+++-+.... . .+ ...++ .++++..++.++
T Consensus 260 ~d~vid~~G~~-~---~~-~~~~~-~l~~~G~iv~~G 290 (371)
T cd08281 260 VDYAFEMAGSV-P---AL-ETAYE-ITRRGGTTVTAG 290 (371)
T ss_pred CCEEEECCCCh-H---HH-HHHHH-HHhcCCEEEEEc
Confidence 79888876421 1 12 23567 788888888876
No 376
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.86 E-value=0.041 Score=39.43 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=31.0
Q ss_pred EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
+|.|||.|.+|-++|..|..+|.+|+.+.+....
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5889999999999999999999999999987644
No 377
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.81 E-value=0.035 Score=54.60 Aligned_cols=85 Identities=18% Similarity=0.252 Sum_probs=51.3
Q ss_pred ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhh------hccccccccccccCCCCCHHHHH
Q 024297 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA------VKNGIIDDLVDEKGCHEDIFEFA 223 (269)
Q Consensus 151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~ell 223 (269)
-.|++|.|.|. |.||+.+++.|...|++|+++.|+..+............ ...+.+.-...+....+++.+++
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 46789999995 999999999999999999999987654211000000000 00000000111122334567778
Q ss_pred hhCCEEEEecCC
Q 024297 224 SKADVVVCCLSL 235 (269)
Q Consensus 224 ~~aDvvv~~lp~ 235 (269)
..+|+||.+...
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 899999988653
No 378
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.81 E-value=0.042 Score=48.00 Aligned_cols=40 Identities=30% Similarity=0.421 Sum_probs=34.4
Q ss_pred ccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 149 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
....+++|.|+| .|.||+.+++.|...|++|+++.|+..+
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~ 53 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDK 53 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 456688999999 5999999999999999999998887543
No 379
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.78 E-value=0.12 Score=49.69 Aligned_cols=88 Identities=18% Similarity=0.199 Sum_probs=57.9
Q ss_pred ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccc-------------ccc
Q 024297 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-------------DEK 213 (269)
Q Consensus 147 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 213 (269)
......+++|+|||.|.-|.+.|..|...|..|++|.+....--....-..+|..+.++++... ...
T Consensus 117 ~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~v 196 (457)
T COG0493 117 LPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRV 196 (457)
T ss_pred CCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceE
Confidence 3456788999999999999999999999999999999866542211111122222222211111 011
Q ss_pred CCCCCHHHHHhhCCEEEEecC
Q 024297 214 GCHEDIFEFASKADVVVCCLS 234 (269)
Q Consensus 214 ~~~~~l~ell~~aDvvv~~lp 234 (269)
+...++++++++.|.|+++..
T Consensus 197 G~~it~~~L~~e~Dav~l~~G 217 (457)
T COG0493 197 GRDITLEELLKEYDAVFLATG 217 (457)
T ss_pred CCcCCHHHHHHhhCEEEEecc
Confidence 224578888888899988854
No 380
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=94.76 E-value=0.061 Score=48.61 Aligned_cols=96 Identities=15% Similarity=0.076 Sum_probs=59.8
Q ss_pred ccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS----- 224 (269)
Q Consensus 151 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~----- 224 (269)
-.|.+|.|.| .|.+|+.+++.++.+|++|++.+++.++..... .-| ++..+.. ....++.+.+.
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~--------~lG-a~~vi~~-~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK--------KLG-FDVAFNY-KTVKSLEETLKKASPD 206 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--------HcC-CCEEEec-cccccHHHHHHHhCCC
Confidence 3578999999 599999999999999999999887654321110 001 0111110 01123333322
Q ss_pred hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
..|+++-++. . .. + ...++ .++++..+|++|.
T Consensus 207 gvdvv~d~~G-~---~~-~-~~~~~-~l~~~G~iv~~G~ 238 (325)
T TIGR02825 207 GYDCYFDNVG-G---EF-S-NTVIG-QMKKFGRIAICGA 238 (325)
T ss_pred CeEEEEECCC-H---HH-H-HHHHH-HhCcCcEEEEecc
Confidence 3688887764 1 12 2 45778 8999999998875
No 381
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.74 E-value=0.091 Score=48.03 Aligned_cols=77 Identities=23% Similarity=0.271 Sum_probs=52.5
Q ss_pred CEEEEEe-cCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297 154 KTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (269)
Q Consensus 154 ~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~ 231 (269)
.+|+|+| .|-+|+++.++|.... .++.....+... .. ...++.+.++|+|++
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------------------~~-------~~~~~~~~~~DvvFl 56 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------------------DA-------AARRELLNAADVAIL 56 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------------------cc-------cCchhhhcCCCEEEE
Confidence 4899999 8999999999999874 466666433211 01 223355678999999
Q ss_pred ecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
++|.. +..+...+..+.|+.+|+.+
T Consensus 57 alp~~------~s~~~~~~~~~~g~~VIDlS 81 (313)
T PRK11863 57 CLPDD------AAREAVALIDNPATRVIDAS 81 (313)
T ss_pred CCCHH------HHHHHHHHHHhCCCEEEECC
Confidence 99833 33444441336788999887
No 382
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.73 E-value=0.061 Score=48.88 Aligned_cols=97 Identities=20% Similarity=0.197 Sum_probs=58.7
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCC-CCCHHHHHh--hCC
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC-HEDIFEFAS--KAD 227 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~--~aD 227 (269)
.|.+|.|+|.|.+|+.+++.++.+|++ |++.+++..+...... -| +......... ...+.++.. ..|
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~--------~g-a~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA--------LG-ADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH--------hC-CCEEEcCCcchHHHHHHHhCCCCCC
Confidence 488999999999999999999999998 9998876544211000 00 0011110000 011223333 478
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
+++-+.... ..+ ...++ .++++..++.+|-
T Consensus 234 ~vid~~g~~----~~~-~~~~~-~l~~~G~~v~~g~ 263 (339)
T cd08239 234 VAIECSGNT----AAR-RLALE-AVRPWGRLVLVGE 263 (339)
T ss_pred EEEECCCCH----HHH-HHHHH-HhhcCCEEEEEcC
Confidence 888876521 111 33567 8888888887764
No 383
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.67 E-value=0.045 Score=49.87 Aligned_cols=98 Identities=22% Similarity=0.181 Sum_probs=56.4
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l 233 (269)
.+|.|+|.|.||.-++.+|...|..|+...|...- ..... -++.+.... ...........-.+.+..+|+|++++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~--~~l~~-~GL~i~~~~--~~~~~~~~~~~~~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRL--EALKK-KGLRIEDEG--GNFTTPVVAATDAEALGPADLVIVTV 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHH--HHHHh-CCeEEecCC--CccccccccccChhhcCCCCEEEEEe
Confidence 48999999999999999999999889998886531 11100 011111100 00000011223345667999999998
Q ss_pred CCCccccCcCCHHHHhhhCCCCcEEE
Q 024297 234 SLNKQTVKLCSSSLSSKSMFFATYVV 259 (269)
Q Consensus 234 p~t~~t~~li~~~~l~~~mk~ga~lI 259 (269)
-.. +|...+.. ... ..++.+.++
T Consensus 76 Ka~-q~~~al~~-l~~-~~~~~t~vl 98 (307)
T COG1893 76 KAY-QLEEALPS-LAP-LLGPNTVVL 98 (307)
T ss_pred ccc-cHHHHHHH-hhh-cCCCCcEEE
Confidence 633 33333322 333 566666555
No 384
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=94.66 E-value=0.054 Score=49.77 Aligned_cols=30 Identities=33% Similarity=0.588 Sum_probs=25.3
Q ss_pred EEEEEecCchHHHHHHHhccC----CCEEEEEcC
Q 024297 155 TVFILGFGNIGVELAKRLRPF----GVKIIATKR 184 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~----G~~V~~~~~ 184 (269)
+|||.|||.||+.+.+.+... +++|..++.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 589999999999999998765 378888764
No 385
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.61 E-value=0.092 Score=48.33 Aligned_cols=95 Identities=21% Similarity=0.183 Sum_probs=58.7
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCC----HHHHHh--
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED----IFEFAS-- 224 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~ell~-- 224 (269)
.|++|.|+|.|.+|+.+++.++.+|++ |++++++..+..... .-| ++..+.. ...+ +.++..
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~--------~~G-a~~~i~~--~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR--------EFG-ATHTVNS--SGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--------HcC-CceEEcC--CCcCHHHHHHHHhCCC
Confidence 578999999999999999999999995 999887654421110 001 0111110 1112 223332
Q ss_pred hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
..|+|+-+... +. .+ .+.+. .++++..+|.+|-
T Consensus 245 g~d~vid~~g~-~~---~~-~~~~~-~~~~~G~iv~~G~ 277 (358)
T TIGR03451 245 GADVVIDAVGR-PE---TY-KQAFY-ARDLAGTVVLVGV 277 (358)
T ss_pred CCCEEEECCCC-HH---HH-HHHHH-HhccCCEEEEECC
Confidence 47988887642 21 22 23566 7899998888874
No 386
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.61 E-value=0.029 Score=44.50 Aligned_cols=35 Identities=40% Similarity=0.560 Sum_probs=30.6
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCC
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~ 186 (269)
+.++|.|+|.|.+|..+|+.|...|+ +++.+|...
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 36799999999999999999999999 799999643
No 387
>PRK06523 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.066 Score=46.59 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=35.2
Q ss_pred ccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
..+.|+++.|.|. |.||+++++.|...|++|++.+|+...
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~ 45 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPD 45 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhh
Confidence 4588999999994 899999999999999999999987543
No 388
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=94.55 E-value=0.041 Score=42.76 Aligned_cols=84 Identities=13% Similarity=0.246 Sum_probs=51.3
Q ss_pred CEEEEEe----cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297 154 KTVFILG----FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (269)
Q Consensus 154 ~~vgIiG----~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv 229 (269)
|+|+||| -++.|..+.+.|+..|++|+.+++....- .... .+.++.+.-...|++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i------------------~G~~---~y~sl~e~p~~iDla 59 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI------------------LGIK---CYPSLAEIPEPIDLA 59 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE------------------TTEE----BSSGGGCSST-SEE
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE------------------CcEE---eeccccCCCCCCCEE
Confidence 6899999 78999999999999999999998765330 1111 346677634789999
Q ss_pred EEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
++++|. +.+..++.+ .. .+..+.+++..+
T Consensus 60 vv~~~~-~~~~~~v~~-~~--~~g~~~v~~~~g 88 (116)
T PF13380_consen 60 VVCVPP-DKVPEIVDE-AA--ALGVKAVWLQPG 88 (116)
T ss_dssp EE-S-H-HHHHHHHHH-HH--HHT-SEEEE-TT
T ss_pred EEEcCH-HHHHHHHHH-HH--HcCCCEEEEEcc
Confidence 999983 334444333 22 234455555544
No 389
>PRK12742 oxidoreductase; Provisional
Probab=94.55 E-value=0.12 Score=44.23 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=31.1
Q ss_pred cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcC
Q 024297 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKR 184 (269)
Q Consensus 150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~ 184 (269)
.+.+|++.|.|. |.||+++|+.|...|++|+...+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~ 38 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA 38 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence 467899999995 89999999999999999988755
No 390
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.55 E-value=0.067 Score=47.97 Aligned_cols=72 Identities=10% Similarity=0.075 Sum_probs=47.9
Q ss_pred CEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297 154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (269)
Q Consensus 154 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~ 232 (269)
++|.|.|. |-||+.+++.|...|.+|++++|+..+... .. ...+.-...+.....++.++++.+|+|+.+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~--------~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~ 71 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRN-LE--------GLDVEIVEGDLRDPASLRKAVAGCRALFHV 71 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccc-cc--------cCCceEEEeeCCCHHHHHHHHhCCCEEEEe
Confidence 47889985 999999999999999999999987543110 00 000011111122334677888899998877
Q ss_pred cC
Q 024297 233 LS 234 (269)
Q Consensus 233 lp 234 (269)
.+
T Consensus 72 a~ 73 (328)
T TIGR03466 72 AA 73 (328)
T ss_pred ce
Confidence 64
No 391
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=94.54 E-value=0.059 Score=50.09 Aligned_cols=34 Identities=35% Similarity=0.586 Sum_probs=31.1
Q ss_pred EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
+|+|||.|..|+.+++.++.+|++|++++.++..
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~ 34 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANA 34 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 5899999999999999999999999999987543
No 392
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.53 E-value=0.074 Score=46.58 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=34.3
Q ss_pred cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
.+.++++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478899999995 99999999999999999999998754
No 393
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.49 E-value=0.066 Score=49.35 Aligned_cols=90 Identities=17% Similarity=0.111 Sum_probs=53.5
Q ss_pred CCEEEEEe-cCchHHHHHHHhccCCC---EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297 153 GKTVFILG-FGNIGVELAKRLRPFGV---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 153 g~~vgIiG-~G~iG~~~a~~l~~~G~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
+.+|+|+| .|.+|++++++|...|+ ++.+..+..... +... + +| .+.. .... +. ..+..+|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g-~~l~------~-~g--~~i~--v~d~-~~-~~~~~vDv 66 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAG-KELS------F-KG--KELK--VEDL-TT-FDFSGVDI 66 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCC-Ceee------e-CC--ceeE--EeeC-CH-HHHcCCCE
Confidence 36899999 79999999999998654 456665432221 1110 0 01 0000 0011 11 23478999
Q ss_pred EEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+.++|. -..++...+.++.|+++|+.+
T Consensus 67 Vf~A~g~------g~s~~~~~~~~~~G~~VIDlS 94 (334)
T PRK14874 67 ALFSAGG------SVSKKYAPKAAAAGAVVIDNS 94 (334)
T ss_pred EEECCCh------HHHHHHHHHHHhCCCEEEECC
Confidence 9999883 234555553457889999876
No 394
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.48 E-value=0.047 Score=52.28 Aligned_cols=37 Identities=32% Similarity=0.458 Sum_probs=33.9
Q ss_pred cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
.+.+++|.|+|+|..|..+|+.|+..|++|.++|...
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~ 42 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNP 42 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCCh
Confidence 3678999999999999999999999999999999654
No 395
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.48 E-value=0.096 Score=47.09 Aligned_cols=82 Identities=21% Similarity=0.078 Sum_probs=49.5
Q ss_pred cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv 230 (269)
.+++|.|.| .|-||+.+++.|...|++|.++.|+.......... ....-....+.-...+......+.++++.+|+|+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 81 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHL-LALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF 81 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHH-HhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence 368999999 69999999999999999999988764331100000 0000000000001111223456888899999887
Q ss_pred EecC
Q 024297 231 CCLS 234 (269)
Q Consensus 231 ~~lp 234 (269)
.+..
T Consensus 82 h~A~ 85 (322)
T PLN02662 82 HTAS 85 (322)
T ss_pred EeCC
Confidence 7764
No 396
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.45 E-value=0.051 Score=52.66 Aligned_cols=36 Identities=25% Similarity=0.487 Sum_probs=33.3
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
+.+++|.|+|+|..|.++|+.|+..|.+|.++|...
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 568899999999999999999999999999999654
No 397
>PRK07856 short chain dehydrogenase; Provisional
Probab=94.42 E-value=0.066 Score=46.48 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=33.6
Q ss_pred cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
++.||++.|.|. |.||+++++.|...|++|+..+|+..
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~ 41 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAP 41 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChh
Confidence 367899999995 78999999999999999999998653
No 398
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=94.42 E-value=0.089 Score=47.85 Aligned_cols=97 Identities=22% Similarity=0.220 Sum_probs=60.6
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv 230 (269)
..|.++.|.|.|.+|+.+++.++.+|++|++++++.++...... + | ++..+... ........-...|+++
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~----g-~~~vi~~~-~~~~~~~~~~~~d~v~ 237 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK----L----G-ADEFIATK-DPEAMKKAAGSLDLII 237 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----c----C-CcEEecCc-chhhhhhccCCceEEE
Confidence 35679999999999999999999999999999876543211000 0 0 00111100 0011122235689999
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
.+.+.. ..-.+.++ .++++..+++++.
T Consensus 238 ~~~g~~-----~~~~~~~~-~l~~~G~~v~~g~ 264 (337)
T cd05283 238 DTVSAS-----HDLDPYLS-LLKPGGTLVLVGA 264 (337)
T ss_pred ECCCCc-----chHHHHHH-HhcCCCEEEEEec
Confidence 887632 11245677 8898888888864
No 399
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=94.41 E-value=0.086 Score=48.36 Aligned_cols=37 Identities=19% Similarity=0.403 Sum_probs=33.3
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
.|.+|.|+|.|.+|+.+++.++..|.+|++++++..+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~ 202 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEK 202 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHH
Confidence 4789999999999999999999999999999876544
No 400
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=94.40 E-value=0.13 Score=46.58 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=58.2
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH---hhCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA---SKAD 227 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aD 227 (269)
-.|.+|.|.|.|.+|+.+++.++++|.+|++.+++..+...... -| ++..+.. ...++.+.+ ...|
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~--------~g-~~~~i~~--~~~~~~~~~~~~~~~d 230 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK--------LG-AHHYIDT--SKEDVAEALQELGGAK 230 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH--------cC-CcEEecC--CCccHHHHHHhcCCCC
Confidence 35789999999999999999999999999999876543211100 00 0001110 112232222 3468
Q ss_pred EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
+++.+.... .. -...++ .++++..+++++-
T Consensus 231 ~vi~~~g~~----~~-~~~~~~-~l~~~G~~v~~g~ 260 (333)
T cd08296 231 LILATAPNA----KA-ISALVG-GLAPRGKLLILGA 260 (333)
T ss_pred EEEECCCch----HH-HHHHHH-HcccCCEEEEEec
Confidence 888764311 12 233567 8888888888763
No 401
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.36 E-value=0.25 Score=44.53 Aligned_cols=91 Identities=15% Similarity=0.042 Sum_probs=62.2
Q ss_pred CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~ 232 (269)
|++++|||-=.=-..+++.|...|++|..+.-.... ..+.........++.++++|+|++-
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~i~p 61 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-------------------DGFTGAVKCELLELDLTTLDVVILP 61 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-------------------cccccceeecchhhhhccCCEEEEC
Confidence 678999998888889999999999998887632111 0011111223455568999999999
Q ss_pred cCCCccc----------cCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 233 LSLNKQT----------VKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 233 lp~t~~t----------~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
+|.+.+. +-.++++.++ .|+++++ +-+|.+
T Consensus 62 ~~~~~~~~~i~~~~~~~~~~l~~~~l~-~~~~~~~-~~~G~~ 101 (287)
T TIGR02853 62 VPGTSHDGKVATVFSNEKVVLTPELLE-STKGHCT-IYVGIS 101 (287)
T ss_pred CccccCCceEecccccCCccccHHHHH-hcCCCCE-EEEecC
Confidence 9976552 1235788999 9998665 444443
No 402
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=94.35 E-value=0.08 Score=48.64 Aligned_cols=84 Identities=20% Similarity=0.107 Sum_probs=52.1
Q ss_pred ccccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh
Q 024297 147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK 225 (269)
Q Consensus 147 ~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 225 (269)
.+++..+++|.|.| .|-||+.+++.|...|.+|++++++..+...... .+. ..+.+.-...+......+.+++++
T Consensus 4 ~~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (353)
T PLN02896 4 EGRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLS---KWK-EGDRLRLFRADLQEEGSFDEAVKG 79 (353)
T ss_pred cccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---hhc-cCCeEEEEECCCCCHHHHHHHHcC
Confidence 35778999999999 6999999999999999999998876432110000 000 000000011111123456777888
Q ss_pred CCEEEEecC
Q 024297 226 ADVVVCCLS 234 (269)
Q Consensus 226 aDvvv~~lp 234 (269)
.|+|+.+..
T Consensus 80 ~d~Vih~A~ 88 (353)
T PLN02896 80 CDGVFHVAA 88 (353)
T ss_pred CCEEEECCc
Confidence 998777654
No 403
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.35 E-value=0.044 Score=47.62 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=34.2
Q ss_pred cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
.+.||++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~ 45 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA 45 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 478999999995 99999999999999999999998654
No 404
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=94.33 E-value=0.1 Score=47.46 Aligned_cols=96 Identities=16% Similarity=0.128 Sum_probs=58.6
Q ss_pred ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS----- 224 (269)
Q Consensus 151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~----- 224 (269)
-.|.+|.|.|. |.+|+.+++.++.+|++|++.+++..+....... -| .+..+. .....++.+.+.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~-------lG-a~~vi~-~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNK-------LG-FDDAFN-YKEEPDLDAALKRYFPN 220 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh-------cC-CceeEE-cCCcccHHHHHHHhCCC
Confidence 35789999998 9999999999999999999988765432110000 00 001111 001113333222
Q ss_pred hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
..|+++-++.. .. -.+.++ .++++..++++|
T Consensus 221 gvd~v~d~~g~-----~~-~~~~~~-~l~~~G~iv~~G 251 (338)
T cd08295 221 GIDIYFDNVGG-----KM-LDAVLL-NMNLHGRIAACG 251 (338)
T ss_pred CcEEEEECCCH-----HH-HHHHHH-HhccCcEEEEec
Confidence 46888877641 11 244677 889998888876
No 405
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=94.32 E-value=0.099 Score=48.12 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=59.0
Q ss_pred ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS----- 224 (269)
Q Consensus 151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~----- 224 (269)
-.|.+|.|.|. |.+|+.+++.++.+|++|++++++..+....... -| ++..+.. ....++.+.+.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~-------lG-a~~vi~~-~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK-------LG-FDEAFNY-KEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh-------cC-CCEEEEC-CCcccHHHHHHHHCCC
Confidence 35789999999 9999999999999999999988655432110000 00 0111110 01123433332
Q ss_pred hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
..|+++-++.. ..+ ...++ .++++..++.+|
T Consensus 228 gvD~v~d~vG~-----~~~-~~~~~-~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDNVGG-----DML-DAALL-NMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEECCCH-----HHH-HHHHH-HhccCCEEEEEC
Confidence 36888877641 122 44677 899999888776
No 406
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.29 E-value=0.072 Score=47.02 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=30.9
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
.++-|+|.|.+++++++.++.+|++|+++|..+.
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 4899999999999999999999999999996543
No 407
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.28 E-value=0.098 Score=49.02 Aligned_cols=68 Identities=25% Similarity=0.289 Sum_probs=51.2
Q ss_pred ccCCEEEEEec----------CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHH
Q 024297 151 LLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF 220 (269)
Q Consensus 151 l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 220 (269)
+.||||||+|+ .+-...++++|+..|++|.+||+....... .......-..++.
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~----------------~~~~~~~~~~~~~ 371 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAF----------------RNFPDVELESDAE 371 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHH----------------hcCCCceEeCCHH
Confidence 89999999996 366788999999999999999986544211 0100111236899
Q ss_pred HHHhhCCEEEEecC
Q 024297 221 EFASKADVVVCCLS 234 (269)
Q Consensus 221 ell~~aDvvv~~lp 234 (269)
+++++||+++++..
T Consensus 372 ~~~~~aDaivi~te 385 (414)
T COG1004 372 EALKGADAIVINTE 385 (414)
T ss_pred HHHhhCCEEEEecc
Confidence 99999999999954
No 408
>PRK06701 short chain dehydrogenase; Provisional
Probab=94.26 E-value=0.13 Score=46.09 Aligned_cols=39 Identities=26% Similarity=0.217 Sum_probs=34.3
Q ss_pred ccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 149 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
..+.++++.|.| .|.||.++|+.|...|++|+.++++..
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~ 81 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEH 81 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 467899999999 588999999999999999999988653
No 409
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.26 E-value=0.1 Score=48.38 Aligned_cols=89 Identities=18% Similarity=0.133 Sum_probs=52.2
Q ss_pred cCCEEEEEe-cCchHHHHHHHhccCCC---EEEEEc--CCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh
Q 024297 152 LGKTVFILG-FGNIGVELAKRLRPFGV---KIIATK--RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK 225 (269)
Q Consensus 152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~---~V~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 225 (269)
...+|+|+| .|.+|+++.++|...++ ++.++. ++..+... + .| .+.. . ...+. +.+.+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~-------~---~~--~~~~--v-~~~~~-~~~~~ 69 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVT-------F---EG--RDYT--V-EELTE-DSFDG 69 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeee-------e---cC--ceeE--E-EeCCH-HHHcC
Confidence 457899999 79999999999987554 444333 22211100 0 00 0000 0 11122 34588
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+|+|++++|.. +..+...+..+.|+.+|+.+
T Consensus 70 ~D~vf~a~p~~------~s~~~~~~~~~~g~~VIDlS 100 (344)
T PLN02383 70 VDIALFSAGGS------ISKKFGPIAVDKGAVVVDNS 100 (344)
T ss_pred CCEEEECCCcH------HHHHHHHHHHhCCCEEEECC
Confidence 99999999843 33444442346789999876
No 410
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=94.25 E-value=0.075 Score=49.02 Aligned_cols=98 Identities=18% Similarity=0.169 Sum_probs=60.4
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv 230 (269)
..|.+|.|+|.|.+|+.+++.++..|.+|++++++..+....... + | .+..... .....+.++....|+++
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~----G-a~~~i~~-~~~~~~~~~~~~~D~vi 249 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---L----G-ADDYLVS-SDAAEMQEAADSLDYII 249 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---c----C-CcEEecC-CChHHHHHhcCCCcEEE
Confidence 367899999999999999999999999998887654331110000 0 0 0000000 01122334444579999
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
-++... ..+ ...++ .++++..++.+|.
T Consensus 250 d~~g~~----~~~-~~~~~-~l~~~G~iv~~G~ 276 (357)
T PLN02514 250 DTVPVF----HPL-EPYLS-LLKLDGKLILMGV 276 (357)
T ss_pred ECCCch----HHH-HHHHH-HhccCCEEEEECC
Confidence 887522 112 33677 8999999998873
No 411
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.24 E-value=0.042 Score=49.94 Aligned_cols=38 Identities=26% Similarity=0.443 Sum_probs=35.3
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 188 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~ 188 (269)
-.|++++|.|+|.+|.++++-+++.|+ +|+++|.++++
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~K 229 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDK 229 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHH
Confidence 468999999999999999999999998 79999998876
No 412
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=94.24 E-value=0.067 Score=39.98 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=41.2
Q ss_pred CCEEEEEecCchHHHHHHHhc-cCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh--CCE
Q 024297 153 GKTVFILGFGNIGVELAKRLR-PFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADV 228 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~-~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDv 228 (269)
..++.|+|+|+.|++++.... ..|++ +.++|.++.+--. ......-+.+++++.+. .|+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~-----------------~i~gipV~~~~~~l~~~~~i~i 65 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGK-----------------EIGGIPVYGSMDELEEFIEIDI 65 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTS-----------------EETTEEEESSHHHHHHHCTTSE
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCc-----------------EECCEEeeccHHHhhhhhCCCE
Confidence 458999999999999986444 45765 4556655543110 01111122467777766 999
Q ss_pred EEEecCC
Q 024297 229 VVCCLSL 235 (269)
Q Consensus 229 vv~~lp~ 235 (269)
-++++|.
T Consensus 66 aii~VP~ 72 (96)
T PF02629_consen 66 AIITVPA 72 (96)
T ss_dssp EEEES-H
T ss_pred EEEEcCH
Confidence 9999984
No 413
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.23 E-value=0.19 Score=52.81 Aligned_cols=90 Identities=24% Similarity=0.261 Sum_probs=61.7
Q ss_pred CCCCCc-cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccc------------
Q 024297 142 KLGVPT-GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD------------ 208 (269)
Q Consensus 142 ~w~~~~-~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 208 (269)
.|..+. ...-.|++|+|||-|..|.+.|..|...|..|++|.|+.+.--. .-|.+||=..+.
T Consensus 1773 gwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl-----l~ygipnmkldk~vv~rrv~ll~~ 1847 (2142)
T KOG0399|consen 1773 GWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL-----LMYGIPNMKLDKFVVQRRVDLLEQ 1847 (2142)
T ss_pred cCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCce-----eeecCCccchhHHHHHHHHHHHHh
Confidence 476542 34568999999999999999999999999999999987654211 112222211000
Q ss_pred ----cc--cccCCCCCHHHHHhhCCEEEEecCCC
Q 024297 209 ----LV--DEKGCHEDIFEFASKADVVVCCLSLN 236 (269)
Q Consensus 209 ----~~--~~~~~~~~l~ell~~aDvvv~~lp~t 236 (269)
.. .+.+...+++++.++-|.||++.-.|
T Consensus 1848 egi~f~tn~eigk~vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1848 EGIRFVTNTEIGKHVSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred hCceEEeeccccccccHHHHhhccCeEEEEeCCC
Confidence 00 12234578999999999999996544
No 414
>PLN02602 lactate dehydrogenase
Probab=94.22 E-value=0.11 Score=48.25 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=30.1
Q ss_pred CEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCC
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWAS 188 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~ 188 (269)
++|+|||.|.+|..+|..+...|. ++..+|.+...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~ 74 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDK 74 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCch
Confidence 699999999999999998886554 79999986643
No 415
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=94.22 E-value=0.1 Score=48.69 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=58.9
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~ 231 (269)
.|++|.|.|.|.+|+.+++.++.+|++|++++++.++....... -| .+..+.. .....+.+.....|+|+-
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~-------lG-a~~~i~~-~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR-------LG-ADSFLVT-TDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh-------CC-CcEEEcC-cCHHHHHHhhCCCcEEEE
Confidence 58899999999999999999999999999988654331110000 00 0001100 001123344445799988
Q ss_pred ecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+.... ..+ ...++ .++++..++.+|
T Consensus 249 ~~G~~----~~~-~~~~~-~l~~~G~iv~vG 273 (375)
T PLN02178 249 TVSAE----HAL-LPLFS-LLKVSGKLVALG 273 (375)
T ss_pred CCCcH----HHH-HHHHH-hhcCCCEEEEEc
Confidence 76421 112 33567 788898888876
No 416
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.18 E-value=0.082 Score=49.67 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=35.3
Q ss_pred cccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 148 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
+....+++|.|+|. |.||+.+++.|...|.+|++++|+..
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~ 95 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKS 95 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechh
Confidence 45678889999995 99999999999999999999998764
No 417
>PLN02740 Alcohol dehydrogenase-like
Probab=94.18 E-value=0.14 Score=47.56 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=33.6
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 188 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~ 188 (269)
-.|.+|.|+|.|.+|..+++.++.+|+ +|++++++..+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r 235 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEK 235 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHH
Confidence 468899999999999999999999999 69999876544
No 418
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=94.17 E-value=0.064 Score=47.07 Aligned_cols=38 Identities=24% Similarity=0.449 Sum_probs=33.0
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWAS 188 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~ 188 (269)
-.|.++.|.|.|.+|+.+++.++.+|.+ |++++++.++
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~ 134 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAAR 134 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHH
Confidence 4678999999999999999999999999 9998865443
No 419
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.15 E-value=0.086 Score=47.59 Aligned_cols=44 Identities=34% Similarity=0.455 Sum_probs=37.7
Q ss_pred CCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCC
Q 024297 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (269)
Q Consensus 143 w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~ 186 (269)
|.......|..++|.|+|+|.+|.++|+.|...|. +|+.+|...
T Consensus 9 ~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 9 LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 55444567999999999999999999999999999 599999654
No 420
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.14 E-value=0.038 Score=50.51 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=62.8
Q ss_pred hHHHHHHHhccCCCEEEEEcCCCCCcc----------ccccccchhhhccccccc-----cccccCCC--CCHHHHHhhC
Q 024297 164 IGVELAKRLRPFGVKIIATKRSWASHS----------QVSCQSSALAVKNGIIDD-----LVDEKGCH--EDIFEFASKA 226 (269)
Q Consensus 164 iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~l~ell~~a 226 (269)
||..+|..+...|++|..+|+++.... .............|.+.. ........ .+..+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 688999999999999999999874210 000000011111222111 00111111 1366888999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG 264 (269)
|+|+-++|-+.+.+.-+-.+..+ .++++++|....-+
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~-~~~~~~ilaSntS~ 117 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGR-HVDADAIIASTTST 117 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHh-hCCCCcEEEEcccc
Confidence 99999999988887766666666 89999999766544
No 421
>PRK06398 aldose dehydrogenase; Validated
Probab=94.13 E-value=0.11 Score=45.40 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=34.4
Q ss_pred cccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 150 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
++.||++.|.| .|.||+++|+.|...|++|+..+|+...
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~ 42 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS 42 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc
Confidence 47899999999 5699999999999999999999987543
No 422
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=94.12 E-value=0.1 Score=48.62 Aligned_cols=35 Identities=31% Similarity=0.345 Sum_probs=31.9
Q ss_pred cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCC
Q 024297 152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
.+++|.|.|. |-||+.+++.|...|.+|++++|..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 5689999996 9999999999999999999999754
No 423
>PRK07985 oxidoreductase; Provisional
Probab=94.09 E-value=0.16 Score=45.54 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=32.6
Q ss_pred cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCC
Q 024297 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
.+.+|++.|.|. |.||+++|+.|...|++|+..+++.
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~ 83 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPV 83 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCc
Confidence 478899999994 8999999999999999999887643
No 424
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=94.06 E-value=0.092 Score=48.13 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=33.4
Q ss_pred ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
+.|++|.|.|. |-||+.+++.|...|.+|++++|+...
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~ 40 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPT 40 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCcc
Confidence 46789999995 899999999999999999999986543
No 425
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=94.06 E-value=0.12 Score=47.84 Aligned_cols=38 Identities=32% Similarity=0.411 Sum_probs=33.4
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 188 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~ 188 (269)
-.|.+|.|+|.|.+|+.+++.++.+|. +|++++++..+
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~ 222 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAK 222 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence 357899999999999999999999999 79999876544
No 426
>PRK04148 hypothetical protein; Provisional
Probab=94.05 E-value=0.06 Score=43.08 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=32.4
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
.++++.+||.| -|..+|+.|...|++|+++|.++..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~a 51 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKA 51 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHH
Confidence 46789999999 9999999999999999999987753
No 427
>PRK06179 short chain dehydrogenase; Provisional
Probab=94.05 E-value=0.096 Score=45.88 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=32.0
Q ss_pred cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
.++++.|.| .|.||+++++.|...|++|++.+|+...
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~ 40 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPAR 40 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence 357888998 6899999999999999999999987543
No 428
>PRK09186 flagellin modification protein A; Provisional
Probab=94.01 E-value=0.08 Score=45.81 Aligned_cols=38 Identities=37% Similarity=0.453 Sum_probs=33.5
Q ss_pred ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
+.+|++.|.|. |.||+++|+.|...|++|++.+|+.++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~ 40 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEA 40 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHH
Confidence 56899999995 899999999999999999999887543
No 429
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.00 E-value=0.12 Score=47.53 Aligned_cols=76 Identities=18% Similarity=0.050 Sum_probs=45.1
Q ss_pred CEEEEEec-CchHHHHHHHhccCCC-------EEEEEcCCCCCc-cccccccchhhhccccccccccccCCCCCHHHHHh
Q 024297 154 KTVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASH-SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 224 (269)
Q Consensus 154 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 224 (269)
++|+|||. |.+|..+|..+...|. ++..+|.+.... ..... .++. +.. ........-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a--~Dl~--~~~-~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVA--MELE--DCA-FPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceee--hhhh--hcc-ccccCceEEecCcHHHhC
Confidence 48999999 9999999998886555 799999854321 11000 0000 000 000000000134568899
Q ss_pred hCCEEEEecC
Q 024297 225 KADVVVCCLS 234 (269)
Q Consensus 225 ~aDvvv~~lp 234 (269)
+||+|+++.-
T Consensus 78 daDivvitaG 87 (322)
T cd01338 78 DADWALLVGA 87 (322)
T ss_pred CCCEEEEeCC
Confidence 9999999864
No 430
>PLN02214 cinnamoyl-CoA reductase
Probab=94.00 E-value=0.13 Score=47.12 Aligned_cols=84 Identities=20% Similarity=0.066 Sum_probs=52.1
Q ss_pred cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
.+.+++|.|.|. |-||+.+++.|...|.+|.++.|+......... .......+.+.-...+.....++.++++.+|+
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 84 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHL--RELEGGKERLILCKADLQDYEALKAAIDGCDG 84 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHH--HHhhCCCCcEEEEecCcCChHHHHHHHhcCCE
Confidence 357889999997 999999999999999999999886543110000 00000000000011112234568888999998
Q ss_pred EEEecCC
Q 024297 229 VVCCLSL 235 (269)
Q Consensus 229 vv~~lp~ 235 (269)
|+.+...
T Consensus 85 Vih~A~~ 91 (342)
T PLN02214 85 VFHTASP 91 (342)
T ss_pred EEEecCC
Confidence 8887643
No 431
>PRK06392 homoserine dehydrogenase; Provisional
Probab=93.99 E-value=0.11 Score=47.76 Aligned_cols=29 Identities=21% Similarity=0.681 Sum_probs=24.3
Q ss_pred EEEEEecCchHHHHHHHhcc--------CCCEEEEEc
Q 024297 155 TVFILGFGNIGVELAKRLRP--------FGVKIIATK 183 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~--------~G~~V~~~~ 183 (269)
+|+|+|||++|+.+++.+.. ++.+|.++.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVs 38 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVS 38 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEE
Confidence 79999999999999999865 567766654
No 432
>PRK07877 hypothetical protein; Provisional
Probab=93.98 E-value=0.078 Score=53.73 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=62.8
Q ss_pred ccccccCCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhcc------------------ccc
Q 024297 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKN------------------GII 206 (269)
Q Consensus 147 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~ 206 (269)
....|++++|+|+|+| +|..+|..|...|. +++.+|...-. ....... -+...+ ++-
T Consensus 101 ~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve-~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp~i~ 177 (722)
T PRK07877 101 EQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLE-LSNLNRV-PAGVFDLGVNKAVVAARRIAELDPYLP 177 (722)
T ss_pred HHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEc-ccccccc-cCChhhcccHHHHHHHHHHHHHCCCCE
Confidence 3467999999999999 99999999999884 78888743211 1111110 011111 000
Q ss_pred cccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297 207 DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS 249 (269)
Q Consensus 207 ~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~ 249 (269)
........+.++++++++.+|+|+-|+- +-+++.++++...+
T Consensus 178 v~~~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~ 219 (722)
T PRK07877 178 VEVFTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARA 219 (722)
T ss_pred EEEEeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 0011111133578899999999999987 56888888876555
No 433
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=93.98 E-value=0.13 Score=46.28 Aligned_cols=94 Identities=20% Similarity=0.112 Sum_probs=57.3
Q ss_pred ccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH-----h
Q 024297 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-----S 224 (269)
Q Consensus 151 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~ 224 (269)
-.|.+|.|.| .|.+|+.+++.++.+|++|++++++.++..... ..| ++..++. ...++.+.+ .
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~--------~~G-a~~vi~~--~~~~~~~~v~~~~~~ 210 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLK--------ELG-FDAVFNY--KTVSLEEALKEAAPD 210 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--------HcC-CCEEEeC--CCccHHHHHHHHCCC
Confidence 3578999999 699999999999999999999887654321100 001 0111111 112332222 1
Q ss_pred hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
..|+++-++.. . . ..+.++ .++++..+++++
T Consensus 211 gvd~vld~~g~--~--~--~~~~~~-~l~~~G~iv~~g 241 (329)
T cd08294 211 GIDCYFDNVGG--E--F--SSTVLS-HMNDFGRVAVCG 241 (329)
T ss_pred CcEEEEECCCH--H--H--HHHHHH-hhccCCEEEEEc
Confidence 36888776541 1 1 245677 888888888776
No 434
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=93.94 E-value=0.15 Score=46.83 Aligned_cols=76 Identities=17% Similarity=0.040 Sum_probs=45.0
Q ss_pred CEEEEEec-CchHHHHHHHhccCCC-------EEEEEcCCCCCc-cccccccchhhhccccccccccccCCCCCHHHHHh
Q 024297 154 KTVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASH-SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 224 (269)
Q Consensus 154 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 224 (269)
.+|+|||. |.+|..+|..|...|. ++..+|.+.... ..... .++. +.. ........-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a--~Dl~--~~~-~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVA--MELE--DCA-FPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHH--HHHh--hcc-ccccCCcEEecChHHHhC
Confidence 38999998 9999999998886664 799999864221 11000 0000 000 000000001135568899
Q ss_pred hCCEEEEecC
Q 024297 225 KADVVVCCLS 234 (269)
Q Consensus 225 ~aDvvv~~lp 234 (269)
+||+||++.-
T Consensus 79 daDvVVitAG 88 (323)
T TIGR01759 79 DVDAALLVGA 88 (323)
T ss_pred CCCEEEEeCC
Confidence 9999999864
No 435
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.87 E-value=0.16 Score=46.69 Aligned_cols=77 Identities=17% Similarity=0.063 Sum_probs=45.7
Q ss_pred EEEEEec-CchHHHHHHHhccCC-------CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 155 TVFILGF-GNIGVELAKRLRPFG-------VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 155 ~vgIiG~-G~iG~~~a~~l~~~G-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+|+|+|. |.+|..++..|...+ .+|..+|++........ ...++. +.. ...........++.+.++.|
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g-~~~Dl~--d~~-~~~~~~~~~~~~~~~~l~~a 79 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEG-VVMELQ--DCA-FPLLKSVVATTDPEEAFKDV 79 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccc-eeeehh--hcc-ccccCCceecCCHHHHhCCC
Confidence 7999999 999999999987643 48999998653211100 000000 000 00000001135677889999
Q ss_pred CEEEEecCC
Q 024297 227 DVVVCCLSL 235 (269)
Q Consensus 227 Dvvv~~lp~ 235 (269)
|+|+.+.-.
T Consensus 80 DiVI~tAG~ 88 (325)
T cd01336 80 DVAILVGAM 88 (325)
T ss_pred CEEEEeCCc
Confidence 999988543
No 436
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.87 E-value=0.085 Score=47.99 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=45.0
Q ss_pred CEEEEEecCchHH-HHHHHhccCC--CE-EEEEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHhh-
Q 024297 154 KTVFILGFGNIGV-ELAKRLRPFG--VK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK- 225 (269)
Q Consensus 154 ~~vgIiG~G~iG~-~~a~~l~~~G--~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~- 225 (269)
.+|||||+|.+++ ..+..+...+ +. |-++|++..+.. .....++ .+.+++++++.
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~-----------------~~a~~~~~~~~~~~~~~ll~~~ 66 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAE-----------------AFAEEFGIAKAYTDLEELLADP 66 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHH-----------------HHHHHcCCCcccCCHHHHhcCC
Confidence 5899999997775 5777887776 45 555577665421 1122222 35789999996
Q ss_pred -CCEEEEecCCC
Q 024297 226 -ADVVVCCLSLN 236 (269)
Q Consensus 226 -aDvvv~~lp~t 236 (269)
.|+|+++.|..
T Consensus 67 ~iD~V~Iatp~~ 78 (342)
T COG0673 67 DIDAVYIATPNA 78 (342)
T ss_pred CCCEEEEcCCCh
Confidence 59999998843
No 437
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.86 E-value=0.053 Score=50.22 Aligned_cols=94 Identities=22% Similarity=0.227 Sum_probs=57.2
Q ss_pred EEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCC--CCCHHHHHh--hCCEE
Q 024297 155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC--HEDIFEFAS--KADVV 229 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~--~aDvv 229 (269)
+|.|+|.|.||...++.++.+|+ +|++.|++..+....... +..+........ .....++.. .+|++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~--------~g~~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA--------GGADVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh--------CCCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence 99999999999999999999997 688888876653221110 000000000000 001223333 48999
Q ss_pred EEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+-+.. ++. .+ .+.++ ..+++..++.+|
T Consensus 243 ie~~G-~~~---~~-~~ai~-~~r~gG~v~~vG 269 (350)
T COG1063 243 IEAVG-SPP---AL-DQALE-ALRPGGTVVVVG 269 (350)
T ss_pred EECCC-CHH---HH-HHHHH-HhcCCCEEEEEe
Confidence 99986 221 22 34667 789998888776
No 438
>PLN02780 ketoreductase/ oxidoreductase
Probab=93.86 E-value=0.15 Score=46.55 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=33.4
Q ss_pred ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
..|+++.|.|. |.||+++|+.|...|++|+.++|+.++
T Consensus 51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~ 89 (320)
T PLN02780 51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDK 89 (320)
T ss_pred ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence 36899999995 789999999999999999999987643
No 439
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.82 E-value=0.14 Score=46.34 Aligned_cols=74 Identities=20% Similarity=0.183 Sum_probs=44.7
Q ss_pred EEEEecCchHHHHHHHhccCC--CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297 156 VFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233 (269)
Q Consensus 156 vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l 233 (269)
|+|||.|.+|..+|..+...| .++..+|++..........-.+...... ........+ .+.++.||+|+++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~-----~~~i~~~~~-~~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLA-----TGTIVRGGD-YADAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccC-----CCeEEECCC-HHHhCCCCEEEEcC
Confidence 589999999999999998877 5899999876542111000000000000 000001133 46889999999998
Q ss_pred CC
Q 024297 234 SL 235 (269)
Q Consensus 234 p~ 235 (269)
..
T Consensus 75 g~ 76 (300)
T cd00300 75 GA 76 (300)
T ss_pred CC
Confidence 63
No 440
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.81 E-value=0.068 Score=45.71 Aligned_cols=37 Identities=35% Similarity=0.418 Sum_probs=32.7
Q ss_pred ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
+.++++.|+|. |.+|+.+++.|...|++|++++|+..
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~ 41 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQK 41 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHH
Confidence 45789999984 99999999999999999999998754
No 441
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=93.76 E-value=0.12 Score=47.59 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=33.5
Q ss_pred cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
.+++++|.|.|. |-||+.+++.|...|.+|+++++...
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~ 50 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFST 50 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 367799999995 99999999999999999999997543
No 442
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.76 E-value=0.069 Score=46.26 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=34.4
Q ss_pred cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
.+.+|++.|.|. |.||+++++.|...|++|++++|+..+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~ 43 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAG 43 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 367899999995 799999999999999999999987543
No 443
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.74 E-value=0.043 Score=46.75 Aligned_cols=43 Identities=30% Similarity=0.468 Sum_probs=37.0
Q ss_pred CCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCC
Q 024297 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (269)
Q Consensus 143 w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 185 (269)
|.......|++++|.|+|.|.+|.++++.|...|. +++.+|..
T Consensus 9 ~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 9 WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 55545567999999999999999999999999998 58888854
No 444
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=93.70 E-value=0.88 Score=44.66 Aligned_cols=120 Identities=8% Similarity=0.095 Sum_probs=83.1
Q ss_pred chHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhcc----CCC-------EEEEE
Q 024297 114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRP----FGV-------KIIAT 182 (269)
Q Consensus 114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~----~G~-------~V~~~ 182 (269)
..+|-.+++.+|+.+|- .++.|.+.+|.|.|.|+.|-.+|+.+.. .|. +++.+
T Consensus 274 QGTaaV~lAgll~Alr~----------------~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~v 337 (559)
T PTZ00317 274 QGTGAVIAAGFLNALKL----------------SGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLV 337 (559)
T ss_pred hhHHHHHHHHHHHHHHH----------------hCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEE
Confidence 34677888888888885 3578999999999999999999998873 577 79999
Q ss_pred cCCCCCcccc----ccccchhhhcccccccccccc--C---CCCCHHHHHhhC--CEEEEecCCCccccCcCCHHHHhhh
Q 024297 183 KRSWASHSQV----SCQSSALAVKNGIIDDLVDEK--G---CHEDIFEFASKA--DVVVCCLSLNKQTVKLCSSSLSSKS 251 (269)
Q Consensus 183 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~---~~~~l~ell~~a--Dvvv~~lp~t~~t~~li~~~~l~~~ 251 (269)
|+..--.... ......| .... . ...+|.|+++.. |+++-+- ..-+.|+++.++ .
T Consensus 338 D~~GLl~~~r~~~l~~~k~~f----------a~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S----~~~g~Ft~evv~-~ 402 (559)
T PTZ00317 338 DSKGLVTTTRGDKLAKHKVPF----------ARTDISAEDSSLKTLEDVVRFVKPTALLGLS----GVGGVFTEEVVK-T 402 (559)
T ss_pred cCCCeEeCCCCccccHHHHHH----------hccccccccccCCCHHHHHhccCCCEEEEec----CCCCCCCHHHHH-H
Confidence 9764321100 0000011 1111 0 135899999998 9888763 123799999999 8
Q ss_pred CCC---CcEEEEccCC
Q 024297 252 MFF---ATYVVFMFQG 264 (269)
Q Consensus 252 mk~---ga~lIN~~RG 264 (269)
|.+ ..++.=.|..
T Consensus 403 Ma~~~~rPIIFaLSNP 418 (559)
T PTZ00317 403 MASNVERPIIFPLSNP 418 (559)
T ss_pred HHhcCCCCEEEECCCC
Confidence 884 7777766654
No 445
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=93.69 E-value=0.23 Score=48.53 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=62.8
Q ss_pred cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+-.+.|+...++|-.. +|..++.+|+-....|+.+-. + ..++.+.+.++
T Consensus 157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHS---K---------------------------T~~lae~v~~A 206 (935)
T KOG4230|consen 157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHS---K---------------------------TRNLAEKVSRA 206 (935)
T ss_pred CCccccceeEEEecccccCChHHHHHHhcCceEEEecC---C---------------------------CccHHHHhccC
Confidence 4679999999999776 599999999999999999752 1 25788999999
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
|+|+.++-- .+++-.+ .+|||+++|++|=
T Consensus 207 DIvIvAiG~----PefVKgd----WiKpGavVIDvGI 235 (935)
T KOG4230|consen 207 DIVIVAIGQ----PEFVKGD----WIKPGAVVIDVGI 235 (935)
T ss_pred CEEEEEcCC----cceeecc----cccCCcEEEEccc
Confidence 999999852 2455443 6789999999973
No 446
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.69 E-value=0.086 Score=50.26 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=33.8
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
+.++++.|+|.|.+|.++|+.|...|++|.++|....
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 5689999999999999999999999999999997654
No 447
>PRK07062 short chain dehydrogenase; Provisional
Probab=93.66 E-value=0.08 Score=46.25 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=35.0
Q ss_pred ccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
..+.||++.|.|. |.||+++|+.|...|++|++.+|+..+
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~ 44 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEER 44 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 3578999999996 679999999999999999999987543
No 448
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.65 E-value=0.082 Score=50.87 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=34.4
Q ss_pred ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
..+.+++|.|+|.|.+|.++|+.|+..|++|+++|+..
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45778999999999999999999999999999998654
No 449
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=93.65 E-value=0.084 Score=50.03 Aligned_cols=80 Identities=24% Similarity=0.280 Sum_probs=50.7
Q ss_pred ccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (269)
Q Consensus 149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (269)
.++.||++.|.|. |.||+++++.|...|++|++++++.++....... ..........+....+++.+.+.+.|
T Consensus 174 ~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~------~~~~v~~v~~Dvsd~~~v~~~l~~ID 247 (406)
T PRK07424 174 LSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEING------EDLPVKTLHWQVGQEAALAELLEKVD 247 (406)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh------cCCCeEEEEeeCCCHHHHHHHhCCCC
Confidence 4678999999996 8999999999999999999998765331110000 00000000011112345667788899
Q ss_pred EEEEecC
Q 024297 228 VVVCCLS 234 (269)
Q Consensus 228 vvv~~lp 234 (269)
+++++..
T Consensus 248 iLInnAG 254 (406)
T PRK07424 248 ILIINHG 254 (406)
T ss_pred EEEECCC
Confidence 9998653
No 450
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=93.64 E-value=0.2 Score=45.76 Aligned_cols=97 Identities=21% Similarity=0.226 Sum_probs=60.2
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCC---CCHHHHHh--
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH---EDIFEFAS-- 224 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~-- 224 (269)
..|++|.|.|.|.+|+.+++.++.+|+ +|++++++..+..... ..| .+..+.. ... ..+.++..
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~--------~~g-a~~~i~~-~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAE--------ELG-ATIVLDP-TEVDVVAEVRKLTGGG 240 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--------HhC-CCEEECC-CccCHHHHHHHHhCCC
Confidence 357899999999999999999999999 8988886554421100 001 0111110 011 12333333
Q ss_pred hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
..|+++-+.... . . -.+.++ .++++..++.++.
T Consensus 241 ~~d~vid~~g~~-~---~-~~~~~~-~l~~~G~~v~~g~ 273 (351)
T cd08233 241 GVDVSFDCAGVQ-A---T-LDTAID-ALRPRGTAVNVAI 273 (351)
T ss_pred CCCEEEECCCCH-H---H-HHHHHH-hccCCCEEEEEcc
Confidence 389999886521 1 1 234677 8999999988764
No 451
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=93.64 E-value=0.18 Score=45.46 Aligned_cols=80 Identities=21% Similarity=0.089 Sum_probs=49.1
Q ss_pred cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhc-c-ccccccccccCCCCCHHHHHhhCCE
Q 024297 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK-N-GIIDDLVDEKGCHEDIFEFASKADV 228 (269)
Q Consensus 152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~ell~~aDv 228 (269)
.+|++.|.| .|-||+.+++.|...|++|+++.++.......... .... . ..+.-...+.....++.++++..|+
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 80 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHL---LALDGAKERLKLFKADLLDEGSFELAIDGCET 80 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHH---HhccCCCCceEEEeCCCCCchHHHHHHcCCCE
Confidence 368999999 59999999999999999998887665431100000 0000 0 0000011112234567888889998
Q ss_pred EEEecC
Q 024297 229 VVCCLS 234 (269)
Q Consensus 229 vv~~lp 234 (269)
|+.+..
T Consensus 81 vih~A~ 86 (325)
T PLN02989 81 VFHTAS 86 (325)
T ss_pred EEEeCC
Confidence 888764
No 452
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.63 E-value=0.089 Score=50.46 Aligned_cols=37 Identities=27% Similarity=0.385 Sum_probs=33.3
Q ss_pred ccCCEEEEEecCchHHH-HHHHhccCCCEEEEEcCCCC
Q 024297 151 LLGKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~-~a~~l~~~G~~V~~~~~~~~ 187 (269)
..+++|.|+|+|..|.+ +|+.|+..|++|+++|....
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 46789999999999999 79999999999999997543
No 453
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.63 E-value=0.12 Score=43.54 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=43.6
Q ss_pred EEEEEecCchHHHHHHHh--ccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCCEE
Q 024297 155 TVFILGFGNIGVELAKRL--RPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVV 229 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l--~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDvv 229 (269)
++.|||.|++|++++..= +..||+ |-+||..+..--. ..+ + -.....++|++.++ +.|+.
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~----------~~~---~--v~V~~~d~le~~v~~~dv~ia 150 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGT----------KIG---D--VPVYDLDDLEKFVKKNDVEIA 150 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCc----------ccC---C--eeeechHHHHHHHHhcCccEE
Confidence 688999999999999853 357898 5567755432100 000 0 00113467888888 67899
Q ss_pred EEecCCC
Q 024297 230 VCCLSLN 236 (269)
Q Consensus 230 v~~lp~t 236 (269)
++|+|..
T Consensus 151 iLtVPa~ 157 (211)
T COG2344 151 ILTVPAE 157 (211)
T ss_pred EEEccHH
Confidence 9999943
No 454
>PRK12367 short chain dehydrogenase; Provisional
Probab=93.63 E-value=0.13 Score=45.08 Aligned_cols=78 Identities=26% Similarity=0.256 Sum_probs=49.9
Q ss_pred ccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (269)
Q Consensus 149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (269)
..+.|+++.|.|. |.||+++|+.|...|++|++++|+......... .+......-+....+++.+.+...|
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~iD 81 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESND--------ESPNEWIKWECGKEESLDKQLASLD 81 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhc--------cCCCeEEEeeCCCHHHHHHhcCCCC
Confidence 4578899999996 789999999999999999999886522111000 0000000011112234566777899
Q ss_pred EEEEecC
Q 024297 228 VVVCCLS 234 (269)
Q Consensus 228 vvv~~lp 234 (269)
++|++.-
T Consensus 82 ilVnnAG 88 (245)
T PRK12367 82 VLILNHG 88 (245)
T ss_pred EEEECCc
Confidence 9998864
No 455
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.63 E-value=0.18 Score=46.24 Aligned_cols=68 Identities=19% Similarity=0.062 Sum_probs=44.4
Q ss_pred CEEEEEec-CchHHHHHHHhccCCC-------EEEEEcCCC--CCccccccccchhhhcccccccccccc-------CCC
Q 024297 154 KTVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSW--ASHSQVSCQSSALAVKNGIIDDLVDEK-------GCH 216 (269)
Q Consensus 154 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 216 (269)
.+|+|+|. |.+|..++..|...|. ++..+|++. +.. .... .++.+.. .-.
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~-~g~~------------~Dl~d~~~~~~~~~~i~ 67 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKAL-EGVV------------MELQDCAFPLLKGVVIT 67 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCcc-ceee------------eehhhhcccccCCcEEe
Confidence 37999999 9999999998876442 599999875 321 1000 0111110 011
Q ss_pred CCHHHHHhhCCEEEEecC
Q 024297 217 EDIFEFASKADVVVCCLS 234 (269)
Q Consensus 217 ~~l~ell~~aDvvv~~lp 234 (269)
.+..+.+++||+||++.-
T Consensus 68 ~~~~~~~~~aDiVVitAG 85 (323)
T cd00704 68 TDPEEAFKDVDVAILVGA 85 (323)
T ss_pred cChHHHhCCCCEEEEeCC
Confidence 456788999999998854
No 456
>PRK10206 putative oxidoreductase; Provisional
Probab=93.62 E-value=0.11 Score=48.02 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=40.5
Q ss_pred EEEEEecCchHHH-HHHHh-cc-CCCEEEE-EcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCCE
Q 024297 155 TVFILGFGNIGVE-LAKRL-RP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV 228 (269)
Q Consensus 155 ~vgIiG~G~iG~~-~a~~l-~~-~G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDv 228 (269)
++||||+|.+++. .+..+ .. -+++|.+ +|++.... ... ........+.++++++. +.|+
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~--------------~~~~~~~~~~~~~ell~~~~iD~ 67 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQA--------------PIYSHIHFTSDLDEVLNDPDVKL 67 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHH--------------HhcCCCcccCCHHHHhcCCCCCE
Confidence 7999999998753 34434 32 3688764 66654221 100 00100113478999996 5799
Q ss_pred EEEecCCC
Q 024297 229 VVCCLSLN 236 (269)
Q Consensus 229 vv~~lp~t 236 (269)
|+++.|..
T Consensus 68 V~I~tp~~ 75 (344)
T PRK10206 68 VVVCTHAD 75 (344)
T ss_pred EEEeCCch
Confidence 99998843
No 457
>PLN02427 UDP-apiose/xylose synthase
Probab=93.61 E-value=0.16 Score=47.20 Aligned_cols=85 Identities=16% Similarity=0.100 Sum_probs=50.9
Q ss_pred ccccccCCEEEEEe-cCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh
Q 024297 147 TGETLLGKTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 224 (269)
Q Consensus 147 ~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 224 (269)
.|+.+..++|.|.| .|-||+.+++.|... |.+|++++++..+....... ......+.+.-..........+.++++
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~--~~~~~~~~~~~~~~Dl~d~~~l~~~~~ 85 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEP--DTVPWSGRIQFHRINIKHDSRLEGLIK 85 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhcc--ccccCCCCeEEEEcCCCChHHHHHHhh
Confidence 35677888999999 599999999999987 69999999764321100000 000000000000111113345778888
Q ss_pred hCCEEEEec
Q 024297 225 KADVVVCCL 233 (269)
Q Consensus 225 ~aDvvv~~l 233 (269)
++|+|+-+.
T Consensus 86 ~~d~ViHlA 94 (386)
T PLN02427 86 MADLTINLA 94 (386)
T ss_pred cCCEEEEcc
Confidence 999877665
No 458
>PRK05993 short chain dehydrogenase; Provisional
Probab=93.58 E-value=0.093 Score=46.44 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=32.6
Q ss_pred cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
.++++.|.|. |.||+++|+.|...|++|++.+|+...
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~ 40 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEED 40 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 3678999997 999999999999999999999987543
No 459
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=93.57 E-value=0.15 Score=44.46 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=34.6
Q ss_pred cccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 150 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
.+.+|++.|.| .|.||+++++.|...|++|+..+++...
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~ 45 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGD 45 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 47899999999 6899999999999999999999887544
No 460
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=93.53 E-value=0.16 Score=45.78 Aligned_cols=96 Identities=22% Similarity=0.274 Sum_probs=58.4
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv 230 (269)
-.|.+|.|+|.|.+|+.+++.++.+|++|++++++..+..... . -| ........ ............|+++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~-~-------~g-~~~~~~~~-~~~~~~~~~~~~d~vi 230 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELAR-K-------LG-ADEVVDSG-AELDEQAAAGGADVIL 230 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-H-------hC-CcEEeccC-CcchHHhccCCCCEEE
Confidence 4568999999999999999999999999999987654421100 0 00 00011100 0011111123579888
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
.++... . ...+.+. .|+++..+|+++
T Consensus 231 ~~~~~~-~----~~~~~~~-~l~~~G~~i~~~ 256 (330)
T cd08245 231 VTVVSG-A----AAEAALG-GLRRGGRIVLVG 256 (330)
T ss_pred ECCCcH-H----HHHHHHH-hcccCCEEEEEC
Confidence 776421 1 2244677 899998888876
No 461
>PLN02240 UDP-glucose 4-epimerase
Probab=93.52 E-value=0.14 Score=46.73 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=32.8
Q ss_pred cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCC
Q 024297 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
++.+++|.|.|. |.+|+.+++.|...|++|+++++..
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~ 39 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLD 39 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCC
Confidence 467899999985 9999999999999999999998654
No 462
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=93.52 E-value=0.2 Score=46.18 Aligned_cols=38 Identities=32% Similarity=0.474 Sum_probs=33.7
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 188 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~ 188 (269)
-.|.+|.|+|.|.+|+.+++.++.+|+ +|++++++..+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~ 224 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSK 224 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence 358899999999999999999999999 79999876544
No 463
>PRK08324 short chain dehydrogenase; Validated
Probab=93.51 E-value=0.092 Score=52.97 Aligned_cols=41 Identities=29% Similarity=0.410 Sum_probs=36.0
Q ss_pred cccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 148 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
...+.|+++.|.| .|.||+.+++.|...|++|++++++...
T Consensus 417 ~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 417 PKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEA 458 (681)
T ss_pred CcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHH
Confidence 3457899999999 5999999999999999999999987643
No 464
>PRK08264 short chain dehydrogenase; Validated
Probab=93.50 E-value=0.14 Score=43.79 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=34.3
Q ss_pred cccCCEEEEEe-cCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297 150 TLLGKTVFILG-FGNIGVELAKRLRPFGV-KIIATKRSWAS 188 (269)
Q Consensus 150 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~-~V~~~~~~~~~ 188 (269)
++.++++.|+| .|.+|+++|+.|...|+ +|+.++|+..+
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~ 43 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES 43 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh
Confidence 36788999999 59999999999999999 99999987644
No 465
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=93.44 E-value=0.23 Score=44.78 Aligned_cols=83 Identities=20% Similarity=0.089 Sum_probs=50.4
Q ss_pred ccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (269)
Q Consensus 151 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv 229 (269)
..|++|.|.| .|-||+.+++.|...|.+|.+..|+..+....... ....-....+.-...+......++++++.+|+|
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 81 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHL-LALDGAKERLKLFKADLLEESSFEQAIEGCDAV 81 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHH-HhccCCCCceEEEecCCCCcchHHHHHhCCCEE
Confidence 3578999999 69999999999999999999877765431100000 000000000011111122345688889999988
Q ss_pred EEecC
Q 024297 230 VCCLS 234 (269)
Q Consensus 230 v~~lp 234 (269)
+.+..
T Consensus 82 ih~A~ 86 (322)
T PLN02986 82 FHTAS 86 (322)
T ss_pred EEeCC
Confidence 87764
No 466
>PRK06182 short chain dehydrogenase; Validated
Probab=93.44 E-value=0.14 Score=44.97 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=32.1
Q ss_pred cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
.++++.|.|. |.||+++++.|...|++|++.+|+.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~ 38 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD 38 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4789999994 89999999999999999999998754
No 467
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=93.43 E-value=0.083 Score=50.05 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=27.4
Q ss_pred CEEEEEecCchHHHHHHHhcc-CCCEEEEEcC
Q 024297 154 KTVFILGFGNIGVELAKRLRP-FGVKIIATKR 184 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~~~~~ 184 (269)
.+|||.|||+||+.+++.+.. ++++|++++.
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINd 117 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVND 117 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecC
Confidence 499999999999999999875 8999998653
No 468
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.38 E-value=0.057 Score=46.97 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=33.3
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
.=+.|+|+|.|.||..+||.....|.+|..+|++.+.
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a 46 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA 46 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence 3468999999999999999999999999999987653
No 469
>PRK12828 short chain dehydrogenase; Provisional
Probab=93.37 E-value=0.098 Score=44.49 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=34.5
Q ss_pred cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
.+.++++.|.|. |.||+.+++.|...|++|++++|+..+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~ 43 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAP 43 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHh
Confidence 367899999994 999999999999999999999987644
No 470
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.28 E-value=0.51 Score=46.21 Aligned_cols=209 Identities=18% Similarity=0.114 Sum_probs=108.0
Q ss_pred CCCcceEEEeCCCCCCchhhHHHHHhcCCCeEEe-eCCCCChhhhcCCceEE-EEeCCCCCHHHHhcC-CCceEEEEccc
Q 024297 9 DKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPISDVPDVIANYHLC-VVKTMRLDSNCISRA-NQMKLIMQFGV 85 (269)
Q Consensus 9 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dv~-i~~~~~~~~~~l~~~-~~Lk~I~~~~a 85 (269)
..+.+++++.+.- .....++++..+.- .+... ..+.+. ...-.....+ +.+... -++++++. .+.-+|+.+++
T Consensus 113 ~~~~~r~lIiGAG-~ag~~l~r~~~~~~-~~~pV~fiDdd~-~~~g~~i~Gv~V~g~~~-i~~~v~~~~~~~iiiAips~ 188 (588)
T COG1086 113 KDNRIRLLIIGAG-SAGDLLLRALRRDP-EYTPVAFLDDDP-DLTGMKIRGVPVLGRIE-IERVVEELGIQLILIAIPSA 188 (588)
T ss_pred ccCCCceEEEcCc-hHHHHHHHHHHhCC-CcceEEEECCCh-hhcCCEEeceeeechhH-HHHHHHHcCCceEEEecCCC
Confidence 4467888888874 44444455554433 33322 333332 1111122211 222222 45555553 35556666666
Q ss_pred cCCcc--chhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCC--CCccccccCCEEEEEe-
Q 024297 86 GLEGV--DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPTGETLLGKTVFILG- 160 (269)
Q Consensus 86 G~d~i--d~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~--~~~~~~l~g~~vgIiG- 160 (269)
+-+.. -+..+.+.|+.+--.|.. .+... ...-+|.+.--+-.-|...-. ...+..+.||+|.|-|
T Consensus 189 ~~~~~~~i~~~l~~~~~~v~~lP~~--------~~l~~--~~~~lreI~ieDLLgR~pV~~d~~~i~~~~~gK~vLVTGa 258 (588)
T COG1086 189 SQEERRRILLRLARTGIAVRILPQL--------TDLKD--LNGQLREIEIEDLLGRPPVALDTELIGAMLTGKTVLVTGG 258 (588)
T ss_pred CHHHHHHHHHHHHhcCCcEEecCcH--------HHHHH--hccccccCCHHHHhCCCCCCCCHHHHHhHcCCCEEEEeCC
Confidence 55431 256678888888877653 33332 222244432211111111100 1135678999999998
Q ss_pred cCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh--CCEEEEe
Q 024297 161 FGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCC 232 (269)
Q Consensus 161 ~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDvvv~~ 232 (269)
.|+||+++++.+..++. +++.++++..+-.. ..+--.-.+++..+.....+..+.+.+.+++.+ .|+|.=+
T Consensus 259 gGSiGsel~~qil~~~p~~i~l~~~~E~~~~~-i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHA 332 (588)
T COG1086 259 GGSIGSELCRQILKFNPKEIILFSRDEYKLYL-IDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVFHA 332 (588)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEecCchHHHHH-HHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEEEh
Confidence 68999999999999998 69999886544111 100000000111111122222244568888888 8988754
No 471
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.27 E-value=0.11 Score=49.51 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=31.8
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
++-+|+|+|+|.+|.++|+.|+..|++|.++|...
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 45689999999999999999999999999999754
No 472
>PRK06196 oxidoreductase; Provisional
Probab=93.26 E-value=0.077 Score=47.98 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=34.5
Q ss_pred ccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
..+.|+++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~ 61 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD 61 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3478899999996 88999999999999999999998754
No 473
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=93.23 E-value=0.18 Score=47.07 Aligned_cols=36 Identities=33% Similarity=0.526 Sum_probs=32.2
Q ss_pred cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
..++|+|||.|..|+.+++.++.+|++|+.++.++.
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~ 46 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYAN 46 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 456899999999999999999999999999997654
No 474
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.22 E-value=0.13 Score=49.05 Aligned_cols=66 Identities=23% Similarity=0.243 Sum_probs=41.2
Q ss_pred CEEEEEecCchHHHHHHHhccC----------CCEEEE-EcCCCCCccccccccchhhhccccccccccccCCCCCHHHH
Q 024297 154 KTVFILGFGNIGVELAKRLRPF----------GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 222 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~----------G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 222 (269)
-+|||+|+|.||+.+++.+... +.+|.+ ++++..+... . .. .......+++++
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~-~--------------~~-~~~~~~~d~~~l 67 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRG-V--------------DL-PGILLTTDPEEL 67 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccC-C--------------CC-cccceeCCHHHH
Confidence 4799999999999998877432 456444 4554433110 0 00 001123678898
Q ss_pred Hh--hCCEEEEecCC
Q 024297 223 AS--KADVVVCCLSL 235 (269)
Q Consensus 223 l~--~aDvvv~~lp~ 235 (269)
+. +.|+|+.+.+.
T Consensus 68 l~d~~iDvVve~tg~ 82 (426)
T PRK06349 68 VNDPDIDIVVELMGG 82 (426)
T ss_pred hhCCCCCEEEECCCC
Confidence 86 57999988763
No 475
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=93.20 E-value=0.063 Score=49.54 Aligned_cols=96 Identities=11% Similarity=0.109 Sum_probs=63.0
Q ss_pred CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH---HhhCCEEE
Q 024297 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF---ASKADVVV 230 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDvvv 230 (269)
..+|+||++-|||.++-.....|+.|.+|+|+.++...- +.|. .. -.......+++++ ++.-.+|+
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~f--------lane--ak-~~~i~ga~S~ed~v~klk~PR~ii 75 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEF--------LANE--AK-GTKIIGAYSLEDFVSKLKKPRVII 75 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHH--------HHHh--hc-CCcccCCCCHHHHHHhcCCCcEEE
Confidence 468999999999999999999999999999988763110 0010 00 0001123455555 45667777
Q ss_pred EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
+.+-.-.-...+|.+ ... .|.+|-++|+-|
T Consensus 76 llvkAG~pVD~~I~~-L~p-~LekgDiIIDGG 105 (487)
T KOG2653|consen 76 LLVKAGAPVDQFIEE-LVP-YLEKGDIIIDGG 105 (487)
T ss_pred EEeeCCCcHHHHHHH-HHh-hcCCCCEEEeCC
Confidence 777655444555544 666 788888888754
No 476
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.18 E-value=0.13 Score=46.96 Aligned_cols=34 Identities=15% Similarity=0.361 Sum_probs=28.5
Q ss_pred EEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCC
Q 024297 155 TVFILGFGNIGVELAKRLRPFGV--KIIATKRSWAS 188 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~ 188 (269)
||+|||.|.+|..+|..|...|. ++..+|.+.+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~ 36 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGV 36 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcch
Confidence 68999999999999998876554 79999986543
No 477
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=93.12 E-value=0.23 Score=45.80 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=33.3
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 188 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~ 188 (269)
..|.+|.|+|.|.+|..+++.++.+|+ +|++++++..+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~ 221 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDK 221 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHH
Confidence 457899999999999999999999999 79998876543
No 478
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.07 E-value=0.087 Score=42.23 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=27.6
Q ss_pred EEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 156 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
+.|+|.|.+++++++.++.+|++|+++|+.++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 46999999999999999999999999997654
No 479
>PRK14851 hypothetical protein; Provisional
Probab=93.07 E-value=0.093 Score=52.88 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=34.9
Q ss_pred CCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcC
Q 024297 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKR 184 (269)
Q Consensus 143 w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~ 184 (269)
|.......|++++|+|+|+|.+|..+++.|...|. +++.+|.
T Consensus 33 ~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~ 75 (679)
T PRK14851 33 FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADF 75 (679)
T ss_pred cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcC
Confidence 33333467999999999999999999999999998 6887774
No 480
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=93.03 E-value=0.14 Score=46.74 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=48.1
Q ss_pred ccCCEEEEEec-CchHHHHHHHhccCC--CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297 151 LLGKTVFILGF-GNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (269)
Q Consensus 151 l~g~~vgIiG~-G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (269)
+.|++|.|.|. |.||+.+++.|.+.| .+|++++++.......... .....+.-...+.....++.+++.+.|
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~-----~~~~~~~~v~~Dl~d~~~l~~~~~~iD 76 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQK-----FPAPCLRFFIGDVRDKERLTRALRGVD 76 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHH-----hCCCcEEEEEccCCCHHHHHHHHhcCC
Confidence 46899999995 999999999999876 7899998764321000000 000000001111123346778888899
Q ss_pred EEEEecC
Q 024297 228 VVVCCLS 234 (269)
Q Consensus 228 vvv~~lp 234 (269)
+|+.+..
T Consensus 77 ~Vih~Ag 83 (324)
T TIGR03589 77 YVVHAAA 83 (324)
T ss_pred EEEECcc
Confidence 9887653
No 481
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=93.02 E-value=0.25 Score=43.98 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=41.8
Q ss_pred EEEEEe-cCchHHHHHHHhcc-CCCEEEE-EcCCCCCcc-ccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297 155 TVFILG-FGNIGVELAKRLRP-FGVKIIA-TKRSWASHS-QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (269)
Q Consensus 155 ~vgIiG-~G~iG~~~a~~l~~-~G~~V~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv 230 (269)
+|+|+| +|.||+.+++.+.. -++++.+ +++...... ... +...+... .......+++++...+|+|+
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~------~~~~~~~~---~gv~~~~d~~~l~~~~DvVI 73 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDA------GELAGIGK---VGVPVTDDLEAVETDPDVLI 73 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCH------HHhcCcCc---CCceeeCCHHHhcCCCCEEE
Confidence 799999 79999999999885 5888665 553322110 000 00000000 00112367777755789999
Q ss_pred EecC
Q 024297 231 CCLS 234 (269)
Q Consensus 231 ~~lp 234 (269)
.+.|
T Consensus 74 dfT~ 77 (266)
T TIGR00036 74 DFTT 77 (266)
T ss_pred ECCC
Confidence 8875
No 482
>PRK06197 short chain dehydrogenase; Provisional
Probab=93.01 E-value=0.11 Score=46.75 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=39.0
Q ss_pred CCCCCCccccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 141 KKLGVPTGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 141 ~~w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
+.|......++.||++.|.|. |.||+++|+.|...|++|++++|+..
T Consensus 4 ~~~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~ 51 (306)
T PRK06197 4 TKWTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLD 51 (306)
T ss_pred CCCCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 456544446789999999995 89999999999999999999988654
No 483
>PRK10537 voltage-gated potassium channel; Provisional
Probab=93.00 E-value=0.1 Score=49.16 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=29.5
Q ss_pred CCEEEEEecCchHHHHHHHhccCCCEEEEEcCC
Q 024297 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (269)
Q Consensus 153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~ 185 (269)
...+.|+|+|.+|+.+++.|+..|.+|++++..
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d 272 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL 272 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc
Confidence 567889999999999999999999998888854
No 484
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=92.99 E-value=0.16 Score=45.05 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=60.8
Q ss_pred HHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEEecCCCccccCc
Q 024297 165 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTVKL 242 (269)
Q Consensus 165 G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~t~~t~~l 242 (269)
|..+|-.+...|.+|+..+++.+-..+.. .....+.+ -.++-.+..+.+.+.++..|.-..|-++
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~-------------w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~I 99 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEH-------------WKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGI 99 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHH-------------HHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHH
Confidence 55677888888999999998876432210 12223333 2245568899999999999998888887
Q ss_pred CCHHHHhhhCCCCcEEEEcc
Q 024297 243 CSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 243 i~~~~l~~~mk~ga~lIN~~ 262 (269)
.. +.+. .++.|+++.|+-
T Consensus 100 ar-ei~~-hvpEgAVicnTC 117 (340)
T COG4007 100 AR-EILE-HVPEGAVICNTC 117 (340)
T ss_pred HH-HHHh-hCcCCcEecccc
Confidence 54 4888 999999999975
No 485
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=92.99 E-value=0.19 Score=49.55 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=37.4
Q ss_pred CCCCCCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297 141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 141 ~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
..|..+......|++|.|||.|.+|...|..|+..|++|+++++..
T Consensus 125 ~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~ 170 (564)
T PRK12771 125 NGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170 (564)
T ss_pred cCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3454433334679999999999999999999999999999998643
No 486
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=92.98 E-value=0.18 Score=45.25 Aligned_cols=60 Identities=25% Similarity=0.443 Sum_probs=41.7
Q ss_pred CEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCCEEE
Q 024297 154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVVV 230 (269)
Q Consensus 154 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDvvv 230 (269)
++|.|.|. |-||+.+++.|...| +|+++++.... ...+..+.+.+.++++ +.|+|+
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~~--------------------~~~Dl~d~~~~~~~~~~~~~D~Vi 59 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHSTD--------------------YCGDFSNPEGVAETVRKIRPDVIV 59 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEecccccc--------------------ccCCCCCHHHHHHHHHhcCCCEEE
Confidence 47899996 999999999999999 89998875321 0001112345667777 479887
Q ss_pred EecC
Q 024297 231 CCLS 234 (269)
Q Consensus 231 ~~lp 234 (269)
-+.-
T Consensus 60 h~Aa 63 (299)
T PRK09987 60 NAAA 63 (299)
T ss_pred ECCc
Confidence 7654
No 487
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=92.96 E-value=0.23 Score=45.69 Aligned_cols=77 Identities=17% Similarity=0.044 Sum_probs=44.2
Q ss_pred EEEEEec-CchHHHHHHHhccCCC-------EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297 155 TVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (269)
Q Consensus 155 ~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (269)
+|+|+|. |.+|..+|..|...|. ++..+|+......... +..+.. +.. ...........+..+.+++|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g-~~~Dl~--d~~-~~~~~~~~~~~~~~~~~~~a 76 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEG-VVMELM--DCA-FPLLDGVVPTHDPAVAFTDV 76 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccce-eEeehh--ccc-chhcCceeccCChHHHhCCC
Confidence 5899999 9999999998886443 5999998654311100 000000 000 00000000112556889999
Q ss_pred CEEEEecCC
Q 024297 227 DVVVCCLSL 235 (269)
Q Consensus 227 Dvvv~~lp~ 235 (269)
|+|+++.-.
T Consensus 77 DiVVitAG~ 85 (324)
T TIGR01758 77 DVAILVGAF 85 (324)
T ss_pred CEEEEcCCC
Confidence 999988643
No 488
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.95 E-value=0.48 Score=47.52 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=33.8
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
..+++|.|||.|..|...|..|+..|++|++|++...
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4699999999999999999999999999999997653
No 489
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=92.95 E-value=0.36 Score=43.11 Aligned_cols=95 Identities=21% Similarity=0.185 Sum_probs=58.2
Q ss_pred cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHh--hC
Q 024297 152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KA 226 (269)
Q Consensus 152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~a 226 (269)
.|.+|.|.|. |.+|+++++.++++|++|+++..+.++...... + | ++....... ....+.++.. ..
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~----g-~~~~~~~~~~~~~~~i~~~~~~~~~ 209 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA----L----G-IGPVVSTEQPGWQDKVREAAGGAPI 209 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh----c----C-CCEEEcCCCchHHHHHHHHhCCCCC
Confidence 5789999986 999999999999999999888765543211100 0 0 001111000 0012333333 48
Q ss_pred CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297 227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF 262 (269)
Q Consensus 227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~ 262 (269)
|+|+-++.. .. ..+.++ .++++..+|.+|
T Consensus 210 d~v~d~~g~-----~~-~~~~~~-~l~~~g~~v~~g 238 (324)
T cd08292 210 SVALDSVGG-----KL-AGELLS-LLGEGGTLVSFG 238 (324)
T ss_pred cEEEECCCC-----hh-HHHHHH-hhcCCcEEEEEe
Confidence 998877542 12 245677 899999999886
No 490
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=92.94 E-value=0.32 Score=44.45 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=28.6
Q ss_pred CEEEEEecCchHHHHHHHhcc--CCCEEEEEcCCCC
Q 024297 154 KTVFILGFGNIGVELAKRLRP--FGVKIIATKRSWA 187 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~--~G~~V~~~~~~~~ 187 (269)
++|+|||.|.||+.+|..|.. ++-++..+|....
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~ 36 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEE 36 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccc
Confidence 489999999999999998864 4558999998733
No 491
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=92.93 E-value=0.11 Score=42.39 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=27.4
Q ss_pred EEEEEecCchHHHHHHHhc-cCCCEEEEEcCCC
Q 024297 155 TVFILGFGNIGVELAKRLR-PFGVKIIATKRSW 186 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~ 186 (269)
+|||-|||+||+.+++.+. .-.++|.+++...
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~ 34 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPA 34 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence 7999999999999999888 4578988887544
No 492
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=92.91 E-value=0.28 Score=43.50 Aligned_cols=96 Identities=23% Similarity=0.230 Sum_probs=57.8
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCC----HHHHHh-
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED----IFEFAS- 224 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~ell~- 224 (269)
..|.+|.|.|.|.+|+.+++.++..|++ |++++++.++.. ... .+. ....... ...+ +.++..
T Consensus 128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~-~~~---~~g-----~~~~~~~--~~~~~~~~l~~~~~~ 196 (312)
T cd08269 128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLA-LAR---ELG-----ATEVVTD--DSEAIVERVRELTGG 196 (312)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH-HHH---HhC-----CceEecC--CCcCHHHHHHHHcCC
Confidence 3578999999999999999999999999 888876543311 000 000 0001110 1122 333332
Q ss_pred -hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297 225 -KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ 263 (269)
Q Consensus 225 -~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R 263 (269)
..|+++.+.... .. -...++ .|+++..+++++.
T Consensus 197 ~~vd~vld~~g~~----~~-~~~~~~-~l~~~g~~~~~g~ 230 (312)
T cd08269 197 AGADVVIEAVGHQ----WP-LDLAGE-LVAERGRLVIFGY 230 (312)
T ss_pred CCCCEEEECCCCH----HH-HHHHHH-HhccCCEEEEEcc
Confidence 378888775321 12 233567 8888888888763
No 493
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=92.87 E-value=0.2 Score=45.07 Aligned_cols=98 Identities=20% Similarity=0.142 Sum_probs=59.0
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCCHH--HH--Hhh
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF--EF--ASK 225 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--el--l~~ 225 (269)
..|.+|.|+|.|.+|+++++.+++.|++ |++++++..+.... . ..|. ...... ...+.. .. -..
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~-~-------~~g~-~~~~~~--~~~~~~~~~~~~~~~ 226 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELA-K-------KLGA-TETVDP--SREDPEAQKEDNPYG 226 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-H-------HhCC-eEEecC--CCCCHHHHHHhcCCC
Confidence 3578999999999999999999999998 88887764431110 0 0000 000100 001111 11 135
Q ss_pred CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297 226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH 265 (269)
Q Consensus 226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~ 265 (269)
.|+++.+.+.. ....+.++ .|+++..+|.++...
T Consensus 227 vd~v~~~~~~~-----~~~~~~~~-~l~~~G~~v~~g~~~ 260 (334)
T cd08234 227 FDVVIEATGVP-----KTLEQAIE-YARRGGTVLVFGVYA 260 (334)
T ss_pred CcEEEECCCCh-----HHHHHHHH-HHhcCCEEEEEecCC
Confidence 79998876521 12244567 888999999887543
No 494
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=92.87 E-value=0.25 Score=45.79 Aligned_cols=64 Identities=11% Similarity=0.162 Sum_probs=45.3
Q ss_pred CEEEEEecCchHHHHHHHhccC--CCEEEE-EcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCE
Q 024297 154 KTVFILGFGNIGVELAKRLRPF--GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV 228 (269)
Q Consensus 154 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDv 228 (269)
.+|||||. .+|+..++.++.. ++++.+ +|++.++. . .....++ .+.++++++.+.|+
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA-~----------------~~A~~~gi~~y~~~eell~d~Di 65 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERS-R----------------ALAHRLGVPLYCEVEELPDDIDI 65 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHH-H----------------HHHHHhCCCccCCHHHHhcCCCE
Confidence 58999999 6899999888765 578666 45543331 1 1222222 45899999999999
Q ss_pred EEEecCC
Q 024297 229 VVCCLSL 235 (269)
Q Consensus 229 vv~~lp~ 235 (269)
+++++|.
T Consensus 66 ~~V~ipt 72 (343)
T TIGR01761 66 ACVVVRS 72 (343)
T ss_pred EEEEeCC
Confidence 9999984
No 495
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=92.83 E-value=0.22 Score=43.94 Aligned_cols=57 Identities=28% Similarity=0.373 Sum_probs=42.8
Q ss_pred EEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC--CEEEE
Q 024297 155 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA--DVVVC 231 (269)
Q Consensus 155 ~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--Dvvv~ 231 (269)
+|.|+|. |.||+.+++.|...|.+|++++|+... . ...+++.+++... |+|+.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d--------------------~----~~~~~~~~~~~~~~~d~vi~ 56 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLD--------------------L----TDPEALERLLRAIRPDAVVN 56 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccC--------------------C----CCHHHHHHHHHhCCCCEEEE
Confidence 4789995 999999999999999999999875211 1 0224577777766 99987
Q ss_pred ecCC
Q 024297 232 CLSL 235 (269)
Q Consensus 232 ~lp~ 235 (269)
+...
T Consensus 57 ~a~~ 60 (287)
T TIGR01214 57 TAAY 60 (287)
T ss_pred CCcc
Confidence 7653
No 496
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.83 E-value=0.15 Score=44.13 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=34.2
Q ss_pred cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (269)
Q Consensus 150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 187 (269)
.+.++++.|.|. |.||+.+++.|...|++|+..+|+..
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~ 42 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQD 42 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChH
Confidence 367899999996 99999999999999999999998764
No 497
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.73 E-value=0.16 Score=48.24 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=32.9
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~ 186 (269)
+.+++|.|+|+|..|.+.++.|+..|.+|.++|...
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 467899999999999999999999999999999654
No 498
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.70 E-value=0.13 Score=41.09 Aligned_cols=31 Identities=35% Similarity=0.572 Sum_probs=28.5
Q ss_pred EEEEEecCchHHHHHHHhccCCC-EEEEEcCC
Q 024297 155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (269)
Q Consensus 155 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 185 (269)
+|.|+|.|.+|.++++.|...|. +++.+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999999 79999865
No 499
>PRK05854 short chain dehydrogenase; Provisional
Probab=92.66 E-value=0.18 Score=45.63 Aligned_cols=41 Identities=32% Similarity=0.475 Sum_probs=35.7
Q ss_pred cccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297 148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS 188 (269)
Q Consensus 148 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~ 188 (269)
..++.||++.|.| .|.||+++|+.|...|++|++.+|+..+
T Consensus 9 ~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~ 50 (313)
T PRK05854 9 VPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAK 50 (313)
T ss_pred CcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 3568999999999 6779999999999999999999987543
No 500
>PLN02827 Alcohol dehydrogenase-like
Probab=92.64 E-value=0.3 Score=45.51 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=32.3
Q ss_pred ccCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCC
Q 024297 151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWAS 188 (269)
Q Consensus 151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~ 188 (269)
-.|.+|.|+|.|.+|+.+++.++.+|++ |++++++..+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~ 230 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEK 230 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHH
Confidence 3588999999999999999999999994 8888765443
Done!