Query 024298
Match_columns 269
No_of_seqs 182 out of 1136
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:33:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09120 p-hydroxycinnamoyl Co 100.0 6.3E-50 1.4E-54 355.2 24.2 215 39-253 6-221 (275)
2 PRK05980 enoyl-CoA hydratase; 100.0 8.9E-50 1.9E-54 351.7 23.6 211 40-250 2-214 (260)
3 PRK06142 enoyl-CoA hydratase; 100.0 5E-49 1.1E-53 349.1 23.8 215 39-253 4-227 (272)
4 PRK09245 enoyl-CoA hydratase; 100.0 5.9E-49 1.3E-53 347.6 24.0 215 39-253 1-220 (266)
5 PRK08140 enoyl-CoA hydratase; 100.0 6.5E-49 1.4E-53 346.6 24.2 213 40-253 3-216 (262)
6 PRK07327 enoyl-CoA hydratase; 100.0 7.2E-49 1.6E-53 347.3 24.0 213 39-253 9-223 (268)
7 PRK07260 enoyl-CoA hydratase; 100.0 6.6E-49 1.4E-53 345.3 23.4 214 40-253 1-215 (255)
8 PRK05862 enoyl-CoA hydratase; 100.0 7.8E-49 1.7E-53 345.2 23.6 208 40-253 3-211 (257)
9 PRK06144 enoyl-CoA hydratase; 100.0 1.1E-48 2.3E-53 345.2 24.2 215 36-253 3-220 (262)
10 TIGR03210 badI 2-ketocyclohexa 100.0 9.3E-49 2E-53 344.4 23.4 209 40-253 1-211 (256)
11 PRK06023 enoyl-CoA hydratase; 100.0 1E-48 2.2E-53 343.4 23.4 209 41-254 3-215 (251)
12 PRK08150 enoyl-CoA hydratase; 100.0 1.5E-48 3.2E-53 342.9 24.3 207 41-253 2-210 (255)
13 PRK09076 enoyl-CoA hydratase; 100.0 1.8E-48 3.9E-53 343.0 24.8 209 40-253 2-212 (258)
14 PRK09674 enoyl-CoA hydratase-i 100.0 1.2E-48 2.5E-53 343.7 23.4 206 42-253 3-209 (255)
15 PRK06190 enoyl-CoA hydratase; 100.0 1.4E-48 3E-53 343.4 23.6 209 39-253 2-211 (258)
16 PRK07511 enoyl-CoA hydratase; 100.0 1.9E-48 4.1E-53 343.3 24.5 212 40-252 2-214 (260)
17 PRK08258 enoyl-CoA hydratase; 100.0 2.7E-48 5.9E-53 345.2 25.6 213 41-253 17-231 (277)
18 PRK07657 enoyl-CoA hydratase; 100.0 1.6E-48 3.4E-53 343.8 23.6 211 39-253 1-214 (260)
19 PRK05869 enoyl-CoA hydratase; 100.0 1.8E-48 4E-53 335.6 22.7 211 39-268 1-217 (222)
20 PRK05995 enoyl-CoA hydratase; 100.0 2.5E-48 5.4E-53 342.9 24.1 212 40-253 3-215 (262)
21 PRK07799 enoyl-CoA hydratase; 100.0 2.7E-48 5.8E-53 342.8 23.7 214 39-253 3-217 (263)
22 PRK06127 enoyl-CoA hydratase; 100.0 4.1E-48 8.8E-53 342.7 24.8 213 39-253 9-223 (269)
23 PRK08138 enoyl-CoA hydratase; 100.0 3.6E-48 7.8E-53 341.7 24.3 209 39-253 5-215 (261)
24 PRK06143 enoyl-CoA hydratase; 100.0 2.6E-48 5.7E-53 341.5 23.4 209 40-253 5-216 (256)
25 TIGR02280 PaaB1 phenylacetate 100.0 2.9E-48 6.3E-53 341.3 23.6 209 43-253 1-210 (256)
26 PRK08139 enoyl-CoA hydratase; 100.0 3.9E-48 8.4E-53 342.2 24.4 211 39-253 9-220 (266)
27 PRK06563 enoyl-CoA hydratase; 100.0 2.5E-48 5.4E-53 341.6 22.6 207 43-253 1-209 (255)
28 KOG1680 Enoyl-CoA hydratase [L 100.0 3.4E-49 7.3E-54 338.1 16.4 212 37-254 33-246 (290)
29 PRK05809 3-hydroxybutyryl-CoA 100.0 5.4E-48 1.2E-52 340.4 24.2 210 40-253 3-214 (260)
30 TIGR01929 menB naphthoate synt 100.0 3.8E-48 8.2E-53 341.1 23.2 210 41-253 2-214 (259)
31 PRK05981 enoyl-CoA hydratase; 100.0 4.9E-48 1.1E-52 341.7 23.9 215 39-253 2-220 (266)
32 PRK08252 enoyl-CoA hydratase; 100.0 4.8E-48 1E-52 339.6 23.5 207 39-253 1-208 (254)
33 PLN02664 enoyl-CoA hydratase/d 100.0 5.6E-48 1.2E-52 342.8 23.9 211 43-253 10-229 (275)
34 PRK07658 enoyl-CoA hydratase; 100.0 6.2E-48 1.3E-52 339.4 23.8 208 42-253 3-211 (257)
35 PRK05674 gamma-carboxygeranoyl 100.0 3.3E-48 7.2E-53 342.5 22.0 212 40-253 4-217 (265)
36 PRK08260 enoyl-CoA hydratase; 100.0 5.9E-48 1.3E-52 346.0 23.6 214 40-253 3-231 (296)
37 PRK05870 enoyl-CoA hydratase; 100.0 2.8E-48 6.1E-53 340.1 20.9 209 39-253 1-210 (249)
38 PRK05864 enoyl-CoA hydratase; 100.0 5.9E-48 1.3E-52 342.9 23.1 215 39-253 7-227 (276)
39 PRK08259 enoyl-CoA hydratase; 100.0 5.6E-48 1.2E-52 339.1 22.6 209 39-253 1-210 (254)
40 PLN02888 enoyl-CoA hydratase 100.0 1.1E-47 2.5E-52 339.0 23.7 209 38-253 6-216 (265)
41 PRK06494 enoyl-CoA hydratase; 100.0 1.1E-47 2.4E-52 338.2 23.4 208 39-253 2-211 (259)
42 PRK06688 enoyl-CoA hydratase; 100.0 1.1E-47 2.3E-52 338.3 23.3 210 39-253 3-213 (259)
43 PRK07468 enoyl-CoA hydratase; 100.0 1.8E-47 3.8E-52 337.5 24.1 212 40-253 3-216 (262)
44 PLN02851 3-hydroxyisobutyryl-C 100.0 4.8E-47 1E-51 350.0 27.8 229 1-229 1-230 (407)
45 PRK07110 polyketide biosynthes 100.0 1.7E-47 3.6E-52 335.2 23.3 208 39-253 3-211 (249)
46 PLN02600 enoyl-CoA hydratase 100.0 1.4E-47 3E-52 336.1 22.7 202 48-253 2-205 (251)
47 PRK07396 dihydroxynaphthoic ac 100.0 1.7E-47 3.8E-52 339.3 23.3 212 39-253 11-224 (273)
48 COG1024 CaiD Enoyl-CoA hydrata 100.0 2.5E-47 5.5E-52 335.6 23.4 213 39-254 3-217 (257)
49 PF00378 ECH: Enoyl-CoA hydrat 100.0 1.6E-47 3.4E-52 334.6 21.9 206 44-253 1-207 (245)
50 PRK03580 carnitinyl-CoA dehydr 100.0 2.4E-47 5.3E-52 336.4 23.2 209 39-253 1-211 (261)
51 PRK06210 enoyl-CoA hydratase; 100.0 2.5E-47 5.4E-52 338.2 22.8 215 39-253 3-226 (272)
52 PRK07659 enoyl-CoA hydratase; 100.0 3.2E-47 6.9E-52 335.4 22.9 208 41-253 6-214 (260)
53 PRK11423 methylmalonyl-CoA dec 100.0 3.9E-47 8.4E-52 335.0 23.0 208 40-253 3-213 (261)
54 PRK07509 enoyl-CoA hydratase; 100.0 4E-47 8.7E-52 335.2 22.5 212 39-253 1-217 (262)
55 PLN02157 3-hydroxyisobutyryl-C 100.0 8.5E-47 1.8E-51 348.4 25.0 215 40-254 36-250 (401)
56 PRK06495 enoyl-CoA hydratase; 100.0 8.3E-47 1.8E-51 332.3 23.5 209 39-253 2-211 (257)
57 PLN03214 probable enoyl-CoA hy 100.0 1.4E-46 3.1E-51 334.0 24.4 212 39-253 9-225 (278)
58 PRK08788 enoyl-CoA hydratase; 100.0 3.9E-46 8.4E-51 331.6 26.0 220 40-260 16-245 (287)
59 PRK07827 enoyl-CoA hydratase; 100.0 1.5E-46 3.3E-51 331.2 23.0 212 39-253 4-215 (260)
60 PRK05617 3-hydroxyisobutyryl-C 100.0 1.2E-46 2.6E-51 343.1 23.0 190 41-230 3-193 (342)
61 PLN02921 naphthoate synthase 100.0 4.2E-46 9.1E-51 337.0 24.5 212 39-253 63-278 (327)
62 PRK06072 enoyl-CoA hydratase; 100.0 4.9E-46 1.1E-50 325.7 23.9 201 43-253 2-202 (248)
63 PRK08290 enoyl-CoA hydratase; 100.0 4.8E-46 1E-50 332.2 23.2 212 40-253 3-233 (288)
64 PRK08272 enoyl-CoA hydratase; 100.0 7.3E-46 1.6E-50 333.3 23.5 212 39-253 8-241 (302)
65 PRK08321 naphthoate synthase; 100.0 7.4E-46 1.6E-50 333.0 23.2 214 40-253 22-253 (302)
66 PRK07938 enoyl-CoA hydratase; 100.0 5.8E-46 1.3E-50 325.4 21.8 201 46-253 7-208 (249)
67 PLN02874 3-hydroxyisobutyryl-C 100.0 1.2E-45 2.7E-50 340.4 24.8 189 39-229 9-197 (379)
68 TIGR03189 dienoyl_CoA_hyt cycl 100.0 1E-45 2.3E-50 324.1 23.0 199 43-252 3-203 (251)
69 PRK07854 enoyl-CoA hydratase; 100.0 9.6E-46 2.1E-50 322.9 22.3 197 43-253 2-199 (243)
70 PRK06213 enoyl-CoA hydratase; 100.0 2.2E-45 4.7E-50 318.1 22.6 207 39-253 1-209 (229)
71 PLN02988 3-hydroxyisobutyryl-C 100.0 3.7E-45 8E-50 336.3 25.1 215 40-254 8-222 (381)
72 PRK12478 enoyl-CoA hydratase; 100.0 1.5E-45 3.2E-50 330.4 20.9 210 40-253 4-226 (298)
73 PRK07112 polyketide biosynthes 100.0 1E-44 2.2E-49 318.6 22.5 206 40-252 3-209 (255)
74 PLN02267 enoyl-CoA hydratase/i 100.0 1.4E-43 3.1E-48 308.4 23.4 196 43-241 2-202 (239)
75 TIGR03200 dearomat_oah 6-oxocy 100.0 4.1E-43 8.9E-48 316.1 23.3 176 51-227 38-215 (360)
76 PRK11730 fadB multifunctional 100.0 3.9E-42 8.4E-47 339.8 24.9 198 42-240 7-206 (715)
77 TIGR03222 benzo_boxC benzoyl-C 100.0 7.2E-42 1.6E-46 325.9 22.5 208 42-253 259-494 (546)
78 TIGR03222 benzo_boxC benzoyl-C 100.0 1.2E-41 2.7E-46 324.3 23.6 208 32-240 2-228 (546)
79 PRK08184 benzoyl-CoA-dihydrodi 100.0 8.3E-42 1.8E-46 326.4 21.7 211 39-253 258-498 (550)
80 cd06558 crotonase-like Crotona 100.0 2.5E-41 5.3E-46 285.1 21.1 192 43-236 1-193 (195)
81 PRK11154 fadJ multifunctional 100.0 1.6E-40 3.4E-45 328.2 25.7 196 39-237 3-204 (708)
82 TIGR02437 FadB fatty oxidation 100.0 6.1E-41 1.3E-45 330.8 22.7 195 42-237 7-203 (714)
83 KOG1681 Enoyl-CoA isomerase [L 100.0 6.3E-42 1.4E-46 285.0 12.9 220 35-254 13-247 (292)
84 TIGR02441 fa_ox_alpha_mit fatt 100.0 2E-40 4.4E-45 327.8 23.9 183 39-224 11-198 (737)
85 TIGR02440 FadJ fatty oxidation 100.0 3.8E-40 8.3E-45 324.9 24.3 188 46-236 6-198 (699)
86 PRK08184 benzoyl-CoA-dihydrodi 100.0 8.4E-40 1.8E-44 312.6 23.1 204 37-241 11-233 (550)
87 KOG1679 Enoyl-CoA hydratase [L 100.0 2.5E-40 5.3E-45 273.3 16.4 190 40-233 26-221 (291)
88 KOG0016 Enoyl-CoA hydratase/is 100.0 1.4E-39 3E-44 276.4 18.5 216 39-268 5-225 (266)
89 COG0447 MenB Dihydroxynaphthoi 100.0 4.8E-38 1.1E-42 260.0 10.7 215 39-255 16-236 (282)
90 KOG1684 Enoyl-CoA hydratase [L 100.0 3.4E-36 7.4E-41 265.5 16.3 226 1-229 1-227 (401)
91 KOG1682 Enoyl-CoA isomerase [L 100.0 2.9E-35 6.3E-40 241.5 13.0 213 37-253 28-241 (287)
92 cd07014 S49_SppA Signal peptid 99.8 7.4E-21 1.6E-25 158.4 11.8 143 68-230 22-175 (177)
93 cd07020 Clp_protease_NfeD_1 No 99.8 5.7E-20 1.2E-24 154.4 13.3 150 52-230 2-172 (187)
94 cd07019 S49_SppA_1 Signal pept 99.7 1.2E-16 2.5E-21 136.8 11.6 144 66-229 19-208 (211)
95 cd07022 S49_Sppa_36K_type Sign 99.6 2.4E-14 5.2E-19 122.8 14.3 150 57-229 13-211 (214)
96 cd00394 Clp_protease_like Case 99.6 1.6E-14 3.5E-19 118.2 12.2 134 65-221 8-161 (161)
97 cd07023 S49_Sppa_N_C Signal pe 99.6 3.1E-14 6.7E-19 121.5 12.1 157 51-229 2-205 (208)
98 TIGR00705 SppA_67K signal pept 99.5 3.3E-14 7.2E-19 138.1 12.3 158 47-224 306-511 (584)
99 cd07016 S14_ClpP_1 Caseinolyti 99.5 8.5E-14 1.8E-18 114.0 10.7 128 68-221 15-160 (160)
100 TIGR00706 SppA_dom signal pept 99.5 8.1E-13 1.8E-17 112.7 12.3 153 51-232 2-203 (207)
101 cd07018 S49_SppA_67K_type Sign 99.4 2.4E-12 5.3E-17 110.9 9.7 145 65-230 26-219 (222)
102 cd07021 Clp_protease_NfeD_like 99.4 1.6E-11 3.5E-16 102.1 13.3 141 52-225 2-172 (178)
103 cd07015 Clp_protease_NfeD Nodu 98.9 3.3E-08 7.1E-13 81.7 12.8 138 64-225 9-166 (172)
104 cd07013 S14_ClpP Caseinolytic 98.9 1.3E-08 2.8E-13 83.5 9.7 131 65-221 9-162 (162)
105 PRK10949 protease 4; Provision 98.9 9.3E-08 2E-12 93.6 16.1 164 48-234 325-539 (618)
106 PRK00277 clpP ATP-dependent Cl 98.8 5.6E-08 1.2E-12 82.5 11.1 137 63-225 38-197 (200)
107 PRK12553 ATP-dependent Clp pro 98.7 2.5E-07 5.4E-12 78.9 11.1 138 64-226 43-204 (207)
108 KOG1683 Hydroxyacyl-CoA dehydr 98.7 3.8E-09 8.2E-14 95.2 -0.3 168 50-224 66-240 (380)
109 PRK12319 acetyl-CoA carboxylas 98.6 2.6E-06 5.7E-11 74.7 16.5 139 62-225 76-215 (256)
110 cd07017 S14_ClpP_2 Caseinolyti 98.5 5.4E-07 1.2E-11 74.6 9.4 132 65-221 18-171 (171)
111 PRK14512 ATP-dependent Clp pro 98.5 1.8E-06 4E-11 73.0 12.3 137 64-226 31-190 (197)
112 CHL00198 accA acetyl-CoA carbo 98.5 7.3E-06 1.6E-10 73.7 16.4 140 62-225 132-271 (322)
113 PF00574 CLP_protease: Clp pro 98.5 9.2E-07 2E-11 73.8 9.1 133 65-224 25-181 (182)
114 PRK11778 putative inner membra 98.5 3.6E-06 7.9E-11 76.2 13.5 162 48-233 89-295 (330)
115 CHL00028 clpP ATP-dependent Cl 98.4 3.4E-06 7.5E-11 71.4 12.2 138 64-226 38-198 (200)
116 PRK05724 acetyl-CoA carboxylas 98.4 1.6E-05 3.5E-10 71.6 14.9 140 62-225 129-268 (319)
117 PLN03230 acetyl-coenzyme A car 98.4 2E-05 4.3E-10 72.9 15.7 138 63-225 200-338 (431)
118 PLN03229 acetyl-coenzyme A car 98.4 2E-05 4.4E-10 77.2 16.5 140 62-225 220-359 (762)
119 TIGR00513 accA acetyl-CoA carb 98.4 2.2E-05 4.8E-10 70.6 15.6 139 62-225 129-268 (316)
120 TIGR00493 clpP ATP-dependent C 98.3 9.7E-06 2.1E-10 68.3 12.2 137 64-223 34-190 (191)
121 COG0616 SppA Periplasmic serin 98.3 7.5E-06 1.6E-10 74.3 12.1 140 70-233 82-271 (317)
122 TIGR03133 malonate_beta malona 98.3 0.00013 2.8E-09 64.6 18.8 150 51-226 61-219 (274)
123 PRK14513 ATP-dependent Clp pro 98.2 2.3E-05 5.1E-10 66.3 12.1 136 63-226 34-194 (201)
124 PRK14514 ATP-dependent Clp pro 98.2 3.1E-05 6.8E-10 66.5 12.4 136 63-224 61-219 (221)
125 PRK12551 ATP-dependent Clp pro 98.2 3.6E-05 7.7E-10 65.1 12.2 139 64-225 33-191 (196)
126 PF01972 SDH_sah: Serine dehyd 98.2 4.9E-05 1.1E-09 66.6 13.2 97 62-184 69-165 (285)
127 PRK05654 acetyl-CoA carboxylas 98.1 0.00028 6E-09 63.2 17.8 156 47-233 118-275 (292)
128 PRK07189 malonate decarboxylas 98.0 0.00017 3.8E-09 64.5 14.4 150 51-226 70-228 (301)
129 TIGR00515 accD acetyl-CoA carb 98.0 0.00054 1.2E-08 61.1 17.0 152 48-230 118-271 (285)
130 CHL00174 accD acetyl-CoA carbo 98.0 0.00069 1.5E-08 60.4 16.5 150 51-230 135-285 (296)
131 PF01343 Peptidase_S49: Peptid 98.0 9.2E-06 2E-10 66.0 4.3 100 134-233 3-149 (154)
132 TIGR00705 SppA_67K signal pept 97.9 0.00014 3.1E-09 71.2 11.8 86 68-173 76-161 (584)
133 TIGR03134 malonate_gamma malon 97.9 0.00089 1.9E-08 58.2 15.3 156 48-227 30-192 (238)
134 COG0740 ClpP Protease subunit 97.7 0.00036 7.7E-09 58.8 10.2 97 129-228 77-196 (200)
135 PF01039 Carboxyl_trans: Carbo 97.7 0.0021 4.5E-08 61.9 16.6 138 52-226 60-207 (493)
136 PRK10949 protease 4; Provision 97.6 0.00051 1.1E-08 67.6 10.9 86 68-173 95-180 (618)
137 COG1030 NfeD Membrane-bound se 97.6 0.0018 4E-08 60.3 13.4 148 48-224 25-188 (436)
138 PRK12552 ATP-dependent Clp pro 97.5 0.0025 5.4E-08 54.8 12.7 144 63-225 47-215 (222)
139 TIGR01117 mmdA methylmalonyl-C 97.5 0.0059 1.3E-07 59.0 16.4 158 54-233 319-490 (512)
140 COG0777 AccD Acetyl-CoA carbox 97.2 0.018 3.8E-07 50.6 13.8 198 2-230 63-273 (294)
141 COG0825 AccA Acetyl-CoA carbox 97.1 0.0018 3.9E-08 57.1 7.6 92 124-224 175-266 (317)
142 TIGR01117 mmdA methylmalonyl-C 97.1 0.01 2.3E-07 57.3 13.7 140 51-227 84-231 (512)
143 PLN02820 3-methylcrotonyl-CoA 97.0 0.029 6.2E-07 54.9 15.5 147 48-227 127-282 (569)
144 PF01039 Carboxyl_trans: Carbo 95.8 0.1 2.2E-06 50.4 10.9 159 54-234 298-474 (493)
145 COG4799 Acetyl-CoA carboxylase 95.3 0.059 1.3E-06 51.8 7.3 104 52-171 93-198 (526)
146 KOG0840 ATP-dependent Clp prot 95.1 0.17 3.6E-06 44.1 8.9 133 63-223 99-256 (275)
147 PLN02820 3-methylcrotonyl-CoA 94.9 1.4 3.1E-05 43.2 15.9 146 63-230 380-546 (569)
148 KOG0540 3-Methylcrotonyl-CoA c 85.8 13 0.00029 35.2 11.3 150 54-230 353-513 (536)
149 COG0074 SucD Succinyl-CoA synt 80.4 5.8 0.00013 35.3 6.4 53 73-149 188-240 (293)
150 PF02601 Exonuc_VII_L: Exonucl 76.1 6.6 0.00014 35.5 5.8 81 66-168 53-136 (319)
151 COG4799 Acetyl-CoA carboxylase 75.8 48 0.001 32.3 11.6 155 54-230 328-500 (526)
152 TIGR00237 xseA exodeoxyribonuc 74.6 7.1 0.00015 37.1 5.8 88 65-174 167-256 (432)
153 smart00250 PLEC Plectin repeat 69.5 3.8 8.2E-05 24.7 1.8 19 202-220 17-35 (38)
154 PTZ00187 succinyl-CoA syntheta 67.5 16 0.00035 33.2 6.2 54 72-149 211-264 (317)
155 COG1570 XseA Exonuclease VII, 66.8 12 0.00027 35.4 5.4 79 67-167 175-253 (440)
156 PF13607 Succ_CoA_lig: Succiny 66.5 22 0.00047 28.2 6.1 51 72-148 41-92 (138)
157 PF00681 Plectin: Plectin repe 63.0 2.5 5.5E-05 26.6 0.1 20 202-221 17-36 (45)
158 PF00549 Ligase_CoA: CoA-ligas 61.5 17 0.00038 29.4 4.7 67 64-150 55-121 (153)
159 PRK00286 xseA exodeoxyribonucl 57.0 22 0.00047 33.7 5.4 78 66-167 174-252 (438)
160 PF06833 MdcE: Malonate decarb 53.4 1.5E+02 0.0033 25.7 14.3 143 62-224 40-187 (234)
161 PLN02522 ATP citrate (pro-S)-l 52.7 41 0.00089 33.5 6.5 53 72-149 209-262 (608)
162 TIGR00377 ant_ant_sig anti-ant 49.3 71 0.0015 23.2 6.1 50 41-95 3-52 (108)
163 PRK02228 V-type ATP synthase s 47.8 1.1E+02 0.0024 22.6 6.9 49 71-146 30-79 (100)
164 PF01990 ATP-synt_F: ATP synth 45.3 77 0.0017 23.0 5.7 53 69-148 26-79 (95)
165 COG0528 PyrH Uridylate kinase 42.1 90 0.002 27.2 6.2 54 39-98 4-57 (238)
166 PRK06091 membrane protein FdrA 41.1 74 0.0016 31.3 6.2 53 72-149 239-291 (555)
167 PF06258 Mito_fiss_Elm1: Mitoc 40.7 2.8E+02 0.006 25.1 10.4 134 37-176 95-246 (311)
168 PF01740 STAS: STAS domain; I 36.6 1.3E+02 0.0027 22.3 5.8 48 43-95 2-57 (117)
169 PLN00125 Succinyl-CoA ligase [ 35.7 81 0.0018 28.5 5.3 54 72-149 192-245 (300)
170 PF00195 Chal_sti_synt_N: Chal 33.8 52 0.0011 28.4 3.6 76 72-170 107-184 (226)
171 TIGR02886 spore_II_AA anti-sig 32.6 1.9E+02 0.0042 20.9 6.7 47 44-95 2-48 (106)
172 PRK13505 formate--tetrahydrofo 32.5 77 0.0017 31.1 4.8 76 83-162 322-397 (557)
173 KOG3997 Major apurinic/apyrimi 31.9 74 0.0016 27.5 4.0 58 46-106 135-192 (281)
174 TIGR02717 AcCoA-syn-alpha acet 31.4 85 0.0018 29.9 4.9 54 71-149 189-242 (447)
175 smart00870 Asparaginase Aspara 31.0 2E+02 0.0043 26.1 7.1 31 63-93 55-85 (323)
176 COG0252 AnsB L-asparaginase/ar 29.3 2.8E+02 0.0061 25.6 7.8 30 63-92 78-107 (351)
177 TIGR01019 sucCoAalpha succinyl 29.1 1.2E+02 0.0026 27.1 5.2 23 72-94 185-207 (286)
178 TIGR00520 asnASE_II L-asparagi 29.0 1.8E+02 0.0038 26.9 6.4 42 51-93 72-113 (349)
179 KOG0595 Serine/threonine-prote 28.9 88 0.0019 29.5 4.4 38 98-135 90-127 (429)
180 cd03225 ABC_cobalt_CbiO_domain 27.5 1.6E+02 0.0035 24.3 5.6 37 53-93 155-191 (211)
181 COG0412 Dienelactone hydrolase 27.1 1.3E+02 0.0029 25.8 5.0 40 122-161 92-133 (236)
182 smart00463 SMR Small MutS-rela 27.0 1.4E+02 0.0031 20.6 4.4 31 67-97 12-43 (80)
183 cd03255 ABC_MJ0796_Lo1CDE_FtsE 26.7 1.6E+02 0.0036 24.4 5.5 39 53-94 161-199 (218)
184 cd03216 ABC_Carb_Monos_I This 26.3 2E+02 0.0044 22.8 5.7 37 53-93 103-139 (163)
185 cd04241 AAK_FomA-like AAK_FomA 26.2 1.4E+02 0.003 25.7 5.1 37 58-97 13-49 (252)
186 cd03297 ABC_ModC_molybdenum_tr 25.7 1.7E+02 0.0036 24.3 5.4 38 53-92 152-189 (214)
187 cd03267 ABC_NatA_like Similar 25.6 1.9E+02 0.0042 24.5 5.8 39 53-94 174-212 (236)
188 PRK13540 cytochrome c biogenes 25.0 2.2E+02 0.0048 23.3 5.9 49 53-105 148-196 (200)
189 PRK10584 putative ABC transpor 25.0 1.8E+02 0.004 24.3 5.5 38 53-93 167-204 (228)
190 PRK05368 homoserine O-succinyl 24.7 2.9E+02 0.0062 25.0 6.8 41 53-95 69-109 (302)
191 PF03464 eRF1_2: eRF1 domain 2 24.7 1.2E+02 0.0027 23.4 4.0 45 51-95 25-83 (133)
192 TIGR01101 V_ATP_synt_F vacuola 24.4 3.3E+02 0.0071 20.9 6.7 50 70-147 45-94 (115)
193 PRK05678 succinyl-CoA syntheta 24.3 1.5E+02 0.0033 26.6 5.0 23 72-94 187-209 (291)
194 TIGR02211 LolD_lipo_ex lipopro 24.3 1.9E+02 0.0042 24.0 5.5 38 53-93 162-199 (221)
195 PLN03037 lipase class 3 family 24.3 79 0.0017 30.8 3.3 43 121-163 299-341 (525)
196 PF01738 DLH: Dienelactone hyd 24.2 1.4E+02 0.003 24.7 4.6 40 122-161 78-119 (218)
197 TIGR01277 thiQ thiamine ABC tr 24.0 2E+02 0.0044 23.8 5.5 38 53-92 149-186 (213)
198 KOG3179 Predicted glutamine sy 23.9 1.6E+02 0.0034 25.3 4.6 45 85-148 59-104 (245)
199 cd03300 ABC_PotA_N PotA is an 23.8 1.9E+02 0.0042 24.4 5.4 38 53-92 151-188 (232)
200 COG0488 Uup ATPase components 23.8 95 0.0021 30.4 3.8 42 54-102 461-502 (530)
201 cd03298 ABC_ThiQ_thiamine_tran 23.4 2E+02 0.0044 23.7 5.4 38 53-92 149-186 (211)
202 cd03214 ABC_Iron-Siderophores_ 23.4 2.2E+02 0.0047 23.0 5.5 38 53-93 118-155 (180)
203 KOG1255 Succinyl-CoA synthetas 23.4 2.5E+02 0.0054 24.8 5.8 71 51-149 204-274 (329)
204 cd03261 ABC_Org_Solvent_Resist 23.4 1.9E+02 0.0042 24.3 5.4 38 53-93 157-194 (235)
205 TIGR01184 ntrCD nitrate transp 23.3 2.1E+02 0.0046 24.1 5.6 38 53-92 135-172 (230)
206 cd03259 ABC_Carb_Solutes_like 23.1 2E+02 0.0044 23.7 5.4 38 53-93 151-188 (213)
207 COG1126 GlnQ ABC-type polar am 23.1 2.2E+02 0.0048 24.7 5.5 37 54-93 158-194 (240)
208 PRK14556 pyrH uridylate kinase 22.6 2.3E+02 0.0049 24.9 5.6 54 40-99 15-68 (249)
209 cd03265 ABC_DrrA DrrA is the A 22.5 2.2E+02 0.0049 23.6 5.6 38 53-92 152-189 (220)
210 COG1131 CcmA ABC-type multidru 22.5 2.2E+02 0.0047 25.4 5.7 40 52-94 156-195 (293)
211 cd03235 ABC_Metallic_Cations A 22.5 2.3E+02 0.005 23.4 5.6 37 53-93 153-189 (213)
212 TIGR01166 cbiO cobalt transpor 22.5 2.4E+02 0.0052 22.8 5.6 37 53-93 148-184 (190)
213 cd03257 ABC_NikE_OppD_transpor 22.4 2.1E+02 0.0046 23.8 5.4 38 53-93 166-203 (228)
214 PRK10247 putative ABC transpor 22.3 2.2E+02 0.0047 23.9 5.5 39 53-94 158-196 (225)
215 PRK11831 putative ABC transpor 22.3 2.1E+02 0.0045 24.9 5.5 39 53-94 164-202 (269)
216 KOG1552 Predicted alpha/beta h 22.2 5.5E+02 0.012 22.7 8.9 85 62-162 68-152 (258)
217 PRK11629 lolD lipoprotein tran 22.1 2.3E+02 0.005 23.8 5.6 38 53-93 166-203 (233)
218 cd03229 ABC_Class3 This class 22.1 2.5E+02 0.0054 22.6 5.6 39 52-93 120-158 (178)
219 TIGR00960 3a0501s02 Type II (G 22.0 2.4E+02 0.0053 23.3 5.7 37 53-92 159-195 (216)
220 cd03293 ABC_NrtD_SsuB_transpor 21.9 2.3E+02 0.005 23.6 5.5 38 53-93 152-189 (220)
221 PF01713 Smr: Smr domain; Int 21.4 1.8E+02 0.0039 20.2 4.1 36 67-102 9-44 (83)
222 PRK13646 cbiO cobalt transport 21.2 2.3E+02 0.0049 25.0 5.5 38 53-92 166-203 (286)
223 PRK09984 phosphonate/organopho 21.2 2.2E+02 0.0047 24.6 5.3 38 53-92 173-210 (262)
224 PRK15112 antimicrobial peptide 21.1 2.2E+02 0.0047 24.7 5.3 38 53-92 170-207 (267)
225 cd03301 ABC_MalK_N The N-termi 21.1 2.4E+02 0.0051 23.3 5.4 38 53-93 151-188 (213)
226 PF05677 DUF818: Chlamydia CHL 21.0 5.2E+02 0.011 24.0 7.7 69 76-158 162-233 (365)
227 PRK11248 tauB taurine transpor 21.0 2.3E+02 0.005 24.4 5.4 28 53-82 149-176 (255)
228 TIGR03768 RPA4764 metallophosp 21.0 6.7E+02 0.014 24.4 8.7 103 43-149 295-409 (492)
229 PRK10908 cell division protein 20.9 2.6E+02 0.0057 23.2 5.7 37 53-93 158-194 (222)
230 cd03213 ABCG_EPDR ABCG transpo 20.6 2.9E+02 0.0062 22.6 5.7 38 52-93 131-168 (194)
231 TIGR03410 urea_trans_UrtE urea 20.6 2.6E+02 0.0057 23.3 5.6 39 53-94 152-190 (230)
232 cd03230 ABC_DR_subfamily_A Thi 20.6 2.6E+02 0.0057 22.3 5.4 38 52-93 115-152 (173)
233 cd03258 ABC_MetN_methionine_tr 20.5 2.4E+02 0.0052 23.7 5.4 38 53-93 161-198 (233)
234 PRK11247 ssuB aliphatic sulfon 20.5 2.4E+02 0.0053 24.4 5.5 29 53-83 154-182 (257)
235 PRK05665 amidotransferase; Pro 20.2 1.6E+02 0.0034 25.6 4.1 26 122-147 76-101 (240)
236 cd03256 ABC_PhnC_transporter A 20.2 2.4E+02 0.0053 23.7 5.3 38 53-93 165-202 (241)
237 TIGR03608 L_ocin_972_ABC putat 20.1 2.9E+02 0.0062 22.6 5.6 39 52-94 154-192 (206)
238 PRK11701 phnK phosphonate C-P 20.0 2.5E+02 0.0054 24.1 5.5 38 53-93 172-209 (258)
No 1
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=6.3e-50 Score=355.18 Aligned_cols=215 Identities=20% Similarity=0.214 Sum_probs=187.0
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.|+++.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++...........
T Consensus 6 ~~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 85 (275)
T PRK09120 6 RWDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEIL 85 (275)
T ss_pred ccccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999998753211111111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.....+.++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 165 (275)
T PRK09120 86 QERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDA 165 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHH
Confidence 223334456678889999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|||++++++++.+.+...+..|..+.+..|.+.
T Consensus 166 ~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l 221 (275)
T PRK09120 166 LYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLRAAKDGF 221 (275)
T ss_pred HHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877776665555555554443
No 2
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.9e-50 Score=351.73 Aligned_cols=211 Identities=26% Similarity=0.375 Sum_probs=184.6
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhh
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++...........
T Consensus 2 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK05980 2 TDTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVA 81 (260)
T ss_pred CceEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhh
Confidence 34689999999999999999999999999999999999999999999999999999 79999999998754211111122
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+.+.+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 161 (260)
T PRK05980 82 LRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRA 161 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHH
Confidence 344555666788899999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHH
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYN 250 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 250 (269)
++++++|++++++||+++||||+|+|++++++++.+.+...+..|..+.+..|
T Consensus 162 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K 214 (260)
T PRK05980 162 LELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVAAIL 214 (260)
T ss_pred HHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999988877666665554444433
No 3
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5e-49 Score=349.08 Aligned_cols=215 Identities=21% Similarity=0.264 Sum_probs=187.6
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhc------
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLN------ 112 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~------ 112 (269)
.++.+.++++++|++|+||||++.|++|.+++.+|.+++++++.|+++++|||||.|++||+|.|++++.....
T Consensus 4 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 83 (272)
T PRK06142 4 TYESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDG 83 (272)
T ss_pred CcceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccc
Confidence 35679999999999999999999999999999999999999999999999999999999999999998754211
Q ss_pred -cCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHh
Q 024298 113 -EGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSH 191 (269)
Q Consensus 113 -~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r 191 (269)
....+....+...+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 163 (272)
T PRK06142 84 LARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPR 163 (272)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHH
Confidence 0111222334455677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHH-HHHHhccCCCCCHHHHHhcCccceeccC-ChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 192 LPGYL-GEYLALTGEKLNGVEMIACGLATHYTLN-GVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 192 ~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++|.. +++++++|++++|+||+++||||+|+|+ +++++++.+.+...+..|..+....|.+.
T Consensus 164 ~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l 227 (272)
T PRK06142 164 IIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTKEVL 227 (272)
T ss_pred HhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99995 8999999999999999999999999996 88999988877777666655665555544
No 4
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.9e-49 Score=347.58 Aligned_cols=215 Identities=20% Similarity=0.322 Sum_probs=186.4
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhcc--CC
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNT-SMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNE--GK 115 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~-~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~--~~ 115 (269)
|++.+.++++++|++||||||++.|++|. +|+.+|.++++.++.|+++++|||+|.|++||+|.|++++...... ..
T Consensus 1 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (266)
T PRK09245 1 MTDFLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGS 80 (266)
T ss_pred CCCceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence 45679999999999999999999999995 9999999999999999999999999999999999999987542110 01
Q ss_pred hhh-HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhh
Q 024298 116 FED-FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (269)
Q Consensus 116 ~~~-~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g 194 (269)
... ...+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG 160 (266)
T PRK09245 81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIG 160 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhh
Confidence 111 1223334566788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
.. +++++++|++++|+||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 161 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 220 (266)
T PRK09245 161 MARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHALRLTKRLL 220 (266)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 95 899999999999999999999999999999999988877777666655666655554
No 5
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.5e-49 Score=346.61 Aligned_cols=213 Identities=22% Similarity=0.286 Sum_probs=182.5
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
|+.+.++++++|++|+||||++.|++|.+++.+|.+++++++ |+++++|||+|.|++||+|.|++++.........+..
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (262)
T PRK08140 3 YETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLG 81 (262)
T ss_pred CceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhH
Confidence 567899999999999999999999999999999999999999 9999999999999999999999987432101111111
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
..+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. ++
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~ 161 (262)
T PRK08140 82 ESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARAL 161 (262)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHH
Confidence 12223345577889999999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++|++++++||+++||||+|+|++++++++.+.+...+..|..+....|.+.
T Consensus 162 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l 216 (262)
T PRK08140 162 GLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLALIKQAM 216 (262)
T ss_pred HHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999977777666655555555555443
No 6
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.2e-49 Score=347.32 Aligned_cols=213 Identities=20% Similarity=0.275 Sum_probs=188.2
Q ss_pred ccCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
.|+.+.+++ +++|++|+||||++.|++|.+++.+|.++|+.++.|+++++|||||.|++||+|.|++++.... ....
T Consensus 9 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~~~ 86 (268)
T PRK07327 9 DYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMA--DDFE 86 (268)
T ss_pred CCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhcc--CcHH
Confidence 467799998 5889999999999999999999999999999999999999999999999999999999875421 1122
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
....+++....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 166 (268)
T PRK07327 87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAK 166 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHH
Confidence 2334455566788899999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+++|++++++++.+.+...+..|..+.+..|+..
T Consensus 167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 223 (268)
T PRK07327 167 AKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIRWTKYAL 223 (268)
T ss_pred HHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999988877777766666666555544
No 7
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.6e-49 Score=345.27 Aligned_cols=214 Identities=22% Similarity=0.362 Sum_probs=187.2
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
++++.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|+.++............
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK07260 1 FEHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSL 80 (255)
T ss_pred CCceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhH
Confidence 35688999999999999999999999999999999999999999999999999999999999999987643222222222
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
..+.+.++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. ++
T Consensus 81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 160 (255)
T PRK07260 81 VKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRAT 160 (255)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHH
Confidence 33445567788899999999999999999999999999999999999999999999999999999999999999985 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+|+++|++++|+||+++||||+++|++++++++...+...+..|..+++..|...
T Consensus 161 ~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~ 215 (255)
T PRK07260 161 HLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYAAIKSLV 215 (255)
T ss_pred HHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999987777777666555555555444
No 8
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.8e-49 Score=345.18 Aligned_cols=208 Identities=23% Similarity=0.370 Sum_probs=182.2
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
++.+.++++++|++|+||||++.|++|.+++.+|.+++++++.|+++++|||+|.|++||+|.|++++... . . .
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~-~--~ 76 (257)
T PRK05862 3 YETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADL---S-F--M 76 (257)
T ss_pred CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhcc---c-h--h
Confidence 35689999999999999999999999999999999999999999999999999999999999999987532 1 1 1
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
..+...+..++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 77 ~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T PRK05862 77 DVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAM 156 (257)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHH
Confidence 12223344567789999999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+|+++|++++|+||+++||||+++|++++++++.+.+...+..|..+....|.+.
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 211 (257)
T PRK05862 157 DLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVMMAKEAV 211 (257)
T ss_pred HHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877666655544555544443
No 9
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-48 Score=345.19 Aligned_cols=215 Identities=22% Similarity=0.257 Sum_probs=188.4
Q ss_pred CccccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccC
Q 024298 36 NDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEG 114 (269)
Q Consensus 36 ~~~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~ 114 (269)
++.+.+.+.++++|+|++|+||||++.|++|.+++.+|.+++++++.|+++++|||||.| ++||+|.|++++....
T Consensus 3 ~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~--- 79 (262)
T PRK06144 3 MTTSTDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFS--- 79 (262)
T ss_pred cccCCCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhcc---
Confidence 345677899999999999999999999999999999999999999999999999999999 7999999999875421
Q ss_pred ChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCccc-ccccCCCchHHHHHhhh
Q 024298 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ-MGFHPDAGASFYLSHLP 193 (269)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~-~Gl~p~~g~~~~l~r~~ 193 (269)
..+....+.+.+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~v 159 (262)
T PRK06144 80 TAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALL 159 (262)
T ss_pred chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHh
Confidence 11222334455677888899999999999999999999999999999999999999999997 99999999999999999
Q ss_pred hHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 194 GYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 194 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
|.. +++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|...
T Consensus 160 G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l 220 (262)
T PRK06144 160 GAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLRATKEAL 220 (262)
T ss_pred CHHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 995 899999999999999999999999999999999987777777666555555555443
No 10
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=9.3e-49 Score=344.44 Aligned_cols=209 Identities=17% Similarity=0.190 Sum_probs=183.6
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhh
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|+++.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++... ....
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~--~~~~-- 76 (256)
T TIGR03210 1 YEDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG--YDGR-- 76 (256)
T ss_pred CCceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc--ccch--
Confidence 45689999999999999999999999999999999999999999999999999999 799999999987421 1111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
..+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++++++++++++|.. +
T Consensus 77 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A 155 (256)
T TIGR03210 77 -GTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKA 155 (256)
T ss_pred -hHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHH
Confidence 11223455678889999999999999999999999999999999999999999999999998888889999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 156 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l 211 (256)
T TIGR03210 156 REIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIAIAKRSF 211 (256)
T ss_pred HHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877777666665666655544
No 11
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-48 Score=343.36 Aligned_cols=209 Identities=19% Similarity=0.268 Sum_probs=184.2
Q ss_pred CcEEEEEeCC---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 41 DQVLVEGRAK---SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 41 ~~v~~~~~~~---v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
+.+.++++++ |++|+||||++.|++|.+|+.+|.++++.+++|+++++|||+|.|++||+|.|++++..... . .
T Consensus 3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~-~-~- 79 (251)
T PRK06023 3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAM-G-G- 79 (251)
T ss_pred ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccc-c-c-
Confidence 4588888874 99999999999999999999999999999999999999999999999999999998754211 1 1
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
..+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 80 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~ 157 (251)
T PRK06023 80 --TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQR 157 (251)
T ss_pred --hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHH
Confidence 12233455678889999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHhc
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFLS 254 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (269)
+++++++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|.+..
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~ 215 (251)
T PRK06023 158 AFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQIARDLMR 215 (251)
T ss_pred HHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999888777777766666666665553
No 12
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-48 Score=342.95 Aligned_cols=207 Identities=23% Similarity=0.235 Sum_probs=180.8
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHH
Q 024298 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (269)
Q Consensus 41 ~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (269)
+.|.++++++|++|+||||++.|++|.+|+.+|.++++.++ +++++|||||.|++||+|.|++++.... .....
T Consensus 2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~----~~~~~ 75 (255)
T PRK08150 2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERD----AGEGM 75 (255)
T ss_pred ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhcc----chhHH
Confidence 45889999999999999999999999999999999999987 7899999999999999999999875421 11122
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHH
Q 024298 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEY 199 (269)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~ 199 (269)
...+.++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +++
T Consensus 76 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 155 (255)
T PRK08150 76 HHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD 155 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 3345566788899999999999999999999999999999999999999999999999999999999999999995 899
Q ss_pred HhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHH-HHHHh
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAA-YNCFL 253 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~ 253 (269)
++++|++++|+||+++||||++||++++++++.+.+...+..|..+.+. ++.+.
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~ 210 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNFAVLNALP 210 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888776666554444443 44443
No 13
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-48 Score=343.00 Aligned_cols=209 Identities=20% Similarity=0.263 Sum_probs=182.8
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhh
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
+..+.++++++|++||||||++ |++|.+++.+|.++++.++.|+++++|||+|.| ++||+|.|++++... +...
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~----~~~~ 76 (258)
T PRK09076 2 MIELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADG----DKAV 76 (258)
T ss_pred ceEEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhc----Chhh
Confidence 3468999999999999999986 999999999999999999999999999999999 789999999987531 1122
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+...+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 156 (258)
T PRK09076 77 AREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWA 156 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 233445566788899999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|+|++++++++.+.+...+..+..+....|...
T Consensus 157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 212 (258)
T PRK09076 157 KRMILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVAACKTLI 212 (258)
T ss_pred HHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999877766666665554555444443
No 14
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=1.2e-48 Score=343.66 Aligned_cols=206 Identities=22% Similarity=0.299 Sum_probs=181.8
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHH
Q 024298 42 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKN 121 (269)
Q Consensus 42 ~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 121 (269)
.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++... + ....
T Consensus 3 ~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~--~~~~ 76 (255)
T PRK09674 3 ELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEK----D--LAAT 76 (255)
T ss_pred eEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhcc----c--hhhh
Confidence 578899999999999999999999999999999999999999999999999999999999999987531 1 1112
Q ss_pred HHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHH
Q 024298 122 FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYL 200 (269)
Q Consensus 122 ~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l 200 (269)
+.+....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+. ++++
T Consensus 77 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l 156 (255)
T PRK09674 77 LNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQM 156 (255)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence 223445678889999999999999999999999999999999999999999999999999999999999999995 8999
Q ss_pred hccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++|++++++||+++||||+|+|++++++++.+.+...+..|..+.+..|.+.
T Consensus 157 ~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l 209 (255)
T PRK09674 157 VLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALRAAKQAL 209 (255)
T ss_pred HHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999977777776666555555555443
No 15
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-48 Score=343.44 Aligned_cols=209 Identities=21% Similarity=0.266 Sum_probs=183.7
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.++++.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.... . +.
T Consensus 2 ~~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~--~--~~ 77 (258)
T PRK06190 2 TEPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDG--S--AY 77 (258)
T ss_pred CCceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhccc--c--hh
Confidence 3567999999999999999999999999999999999999999999999999999999999999999875321 1 11
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.. ...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +
T Consensus 78 -~~-~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 155 (258)
T PRK06190 78 -GA-QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRA 155 (258)
T ss_pred -hH-HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11 23456678889999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 156 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 211 (258)
T PRK06190 156 RRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRALKASY 211 (258)
T ss_pred HHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999977777666665554555444443
No 16
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-48 Score=343.27 Aligned_cols=212 Identities=20% Similarity=0.297 Sum_probs=186.0
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
+.++.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|+.++..... ...+..
T Consensus 2 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~-~~~~~~ 80 (260)
T PRK07511 2 SAELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRA-KPPSVQ 80 (260)
T ss_pred CCeeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhccc-ccchhH
Confidence 3458899999999999999999999999999999999999999999999999999999999999998754211 112233
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
..+...+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. ++
T Consensus 81 ~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 160 (260)
T PRK07511 81 AASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLAT 160 (260)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHH
Confidence 44556777888999999999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
+|+++|++++++||+++||||+|+|++++++++.+.+...+..|..+....|..
T Consensus 161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~~~~K~~ 214 (260)
T PRK07511 161 ELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNALARIKSL 214 (260)
T ss_pred HHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999999999999999988877766655544444444433
No 17
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-48 Score=345.16 Aligned_cols=213 Identities=22% Similarity=0.249 Sum_probs=186.7
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHH
Q 024298 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (269)
Q Consensus 41 ~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (269)
+.+.++++++|++|+||||++.|+++.+++.+|.++++.++.|+++++|||||.|++||+|.|+.++.......+.....
T Consensus 17 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 96 (277)
T PRK08258 17 RHFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELL 96 (277)
T ss_pred cceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999874321111222233
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccC-CCchHHHHHhhhhHH-HH
Q 024298 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHP-DAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~l~r~~g~~-a~ 198 (269)
.+.+.+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|.. ++
T Consensus 97 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~ 176 (277)
T PRK08258 97 AFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRAS 176 (277)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHH
Confidence 4555566788899999999999999999999999999999999999999999999999995 788999999999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++|++++|+||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 177 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 231 (277)
T PRK08258 177 ELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHGMTKTML 231 (277)
T ss_pred HHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877777666666666655554
No 18
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-48 Score=343.82 Aligned_cols=211 Identities=20% Similarity=0.316 Sum_probs=187.5
Q ss_pred ccCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCCh
Q 024298 39 LQDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 39 ~~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
|++++.+++ +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|+.++... +.
T Consensus 1 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~----~~ 76 (260)
T PRK07657 1 MLQNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGM----NE 76 (260)
T ss_pred CCceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcC----Ch
Confidence 456799996 789999999999999999999999999999999999999999999999 599999999987532 12
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~ 196 (269)
.....+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~ 156 (260)
T PRK07657 77 EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG 156 (260)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHH
Confidence 22344556667788899999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|...
T Consensus 157 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 214 (260)
T PRK07657 157 RAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVRQAKEAI 214 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 799999999999999999999999999999999988877777666655555555544
No 19
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.8e-48 Score=335.61 Aligned_cols=211 Identities=23% Similarity=0.296 Sum_probs=185.9
Q ss_pred ccCcEEEEEe-----CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhcc
Q 024298 39 LQDQVLVEGR-----AKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNE 113 (269)
Q Consensus 39 ~~~~v~~~~~-----~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~ 113 (269)
|+++|.++.. ++|++|+||||++ |++|.+++.+|.+++++++.|+++++|||||.|++||+|+|++++....
T Consensus 1 ~~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~-- 77 (222)
T PRK05869 1 MNEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLS-- 77 (222)
T ss_pred CccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccC--
Confidence 4566777665 8899999999985 9999999999999999999999999999999999999999999875421
Q ss_pred CChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhh
Q 024298 114 GKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLP 193 (269)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~ 193 (269)
........+.++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++
T Consensus 78 --~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~i 155 (222)
T PRK05869 78 --AQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAA 155 (222)
T ss_pred --hhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHh
Confidence 112223345567788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHhcCCccchHHHHHHhh
Q 024298 194 GYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFLSLPDRDFHWLRNELE 268 (269)
Q Consensus 194 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~ 268 (269)
|.. +++++++|++++|+||+++||||+++|+++++++ +.++.+.+.+.|+.++..+|+.++
T Consensus 156 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~--------------a~~~a~~ia~~~~~a~~~~K~~~~ 217 (222)
T PRK05869 156 GPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDA--------------AAAWARRFLDGPPHALAAAKAGIS 217 (222)
T ss_pred CHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 995 7999999999999999999999999999999998 666666677777777777777664
No 20
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-48 Score=342.90 Aligned_cols=212 Identities=20% Similarity=0.288 Sum_probs=183.8
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
++.+.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.|++||+|.|++++........ ...
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~~ 81 (262)
T PRK05995 3 YETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSD-DEN 81 (262)
T ss_pred CceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCc-hhh
Confidence 5679999999999999999999999999999999999999999999999999999999999999998754211111 111
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
......+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ ++++++|.. ++
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a~ 160 (262)
T PRK05995 82 RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGERAAR 160 (262)
T ss_pred hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHHHHH
Confidence 1223456678889999999999999999999999999999999999999999999999999988765 488999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|.+.
T Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 215 (262)
T PRK05995 161 RYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVRAGKRLV 215 (262)
T ss_pred HHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877777666655666555544
No 21
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-48 Score=342.85 Aligned_cols=214 Identities=23% Similarity=0.287 Sum_probs=180.8
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++...........
T Consensus 3 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (263)
T PRK07799 3 GGPHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKD 82 (263)
T ss_pred CCceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhh
Confidence 35679999999999999999999999999999999999999999999999999999999999999998764311111000
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.......+..+ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 83 ~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 161 (263)
T PRK07799 83 GSYDPSRIDAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVA 161 (263)
T ss_pred hhhhhhHHHHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHH
Confidence 00011222223 347899999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|||++++++++.+.+...+..|..+....|++.
T Consensus 162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~~~K~~l 217 (263)
T PRK07799 162 CDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQAILRTI 217 (263)
T ss_pred HHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999999999999999999877777666666555555555444
No 22
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.1e-48 Score=342.69 Aligned_cols=213 Identities=22% Similarity=0.280 Sum_probs=187.4
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
..+.|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++.... ...+
T Consensus 9 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~--~~~~ 86 (269)
T PRK06127 9 PTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESR--SDAE 86 (269)
T ss_pred CCCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcc--cchH
Confidence 456699999999999999999999999999999999999999999999999999998 7999999999875421 1122
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
....+.+....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 87 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 166 (269)
T PRK06127 87 AVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSA 166 (269)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHH
Confidence 2334455566788899999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++++||+++||||+|||++++++++.+.+...+..|..+.+..|.+.
T Consensus 167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 223 (269)
T PRK06127 167 AKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAKRAI 223 (269)
T ss_pred HHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999988877776655555555555444
No 23
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.6e-48 Score=341.66 Aligned_cols=209 Identities=22% Similarity=0.345 Sum_probs=183.3
Q ss_pred ccCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
..+.+.++. +++|++|+||||++.|++|.+|+.+|.++++.+++|+++++|||+|.|++||+|.|++++... .
T Consensus 5 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~--- 78 (261)
T PRK08138 5 ATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATA---G--- 78 (261)
T ss_pred CCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhcc---c---
Confidence 345678887 788999999999999999999999999999999999999999999999999999999987532 1
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
....+.+.+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 158 (261)
T PRK08138 79 AIEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFK 158 (261)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHH
Confidence 1123344556788889999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++|+++|++++++||+++||||+++|++++++++.+.+...+..|..+....|.+.
T Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 215 (261)
T PRK08138 159 AMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLALAQIKEVV 215 (261)
T ss_pred HHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999887777666665555555555443
No 24
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-48 Score=341.53 Aligned_cols=209 Identities=21% Similarity=0.319 Sum_probs=183.8
Q ss_pred cCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChh
Q 024298 40 QDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 40 ~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
++++.++. +++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.| ++||+|.|++++... +..
T Consensus 5 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~~ 80 (256)
T PRK06143 5 NAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATL----DQA 80 (256)
T ss_pred cccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhc----Chh
Confidence 34577774 688999999999999999999999999999999999999999999999 799999999987532 122
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
....+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|+++++++++|..
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~ 159 (256)
T PRK06143 81 SAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR 159 (256)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence 23445566777888999999999999999999999999999999999999999999999998 7788899999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||++||++++++++.+.+...+..|..+.+..|.+.
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 216 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALRQQKRLL 216 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999988877777766655666555544
No 25
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=2.9e-48 Score=341.35 Aligned_cols=209 Identities=22% Similarity=0.295 Sum_probs=179.7
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+ +++|||||.|++||+|.|++++..... ...+....+
T Consensus 1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~ 78 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPG-GAPDLGRTI 78 (256)
T ss_pred CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccc-cchhHHHHH
Confidence 457889999999999999999999999999999999999998 999999999999999999998754211 111111122
Q ss_pred HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHh
Q 024298 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLA 201 (269)
Q Consensus 123 ~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ 201 (269)
...+..++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +++|+
T Consensus 79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~ 158 (256)
T TIGR02280 79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLA 158 (256)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 22345577889999999999999999999999999999999999999999999999999999999999999995 89999
Q ss_pred ccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++|++++++||+++||||+++|++++++++.+.+...+..|..+....|+..
T Consensus 159 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~K~~l 210 (256)
T TIGR02280 159 MLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLALTKRAI 210 (256)
T ss_pred HcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999988877776665554555554443
No 26
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.9e-48 Score=342.25 Aligned_cols=211 Identities=20% Similarity=0.275 Sum_probs=185.3
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
..+.+.++.+++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.|++||+|.|+.++... ...+.
T Consensus 9 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~~~~~ 85 (266)
T PRK08139 9 EAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAA---RGLAY 85 (266)
T ss_pred cCCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcc---cchhH
Confidence 456799999999999999999999999999999999999999999999999999999999999999987532 11222
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+++.+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ .++|++++|.. +
T Consensus 86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A 164 (266)
T PRK08139 86 FRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQA 164 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHH
Confidence 344455667788899999999999999999999999999999999999999999999999999875 56899999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|++.
T Consensus 165 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 220 (266)
T PRK08139 165 MEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVRIGKEAF 220 (266)
T ss_pred HHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877777666555555555444
No 27
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-48 Score=341.58 Aligned_cols=207 Identities=21% Similarity=0.260 Sum_probs=178.2
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
|.++++|+|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|.|++++....... ...+
T Consensus 1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~----~~~~ 76 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG----GFPF 76 (255)
T ss_pred CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc----hhhh
Confidence 457889999999999999999999999999999999999999999999999999999999999875421111 1111
Q ss_pred HHH-HHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHH
Q 024298 123 FET-LYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYL 200 (269)
Q Consensus 123 ~~~-~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l 200 (269)
... ...+...+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. ++++
T Consensus 77 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 156 (255)
T PRK06563 77 PEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRY 156 (255)
T ss_pred hhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHH
Confidence 111 22233357899999999999999999999999999999999999999999999999999999999999995 8999
Q ss_pred hccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~ 209 (255)
T PRK06563 157 LLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQATLASA 209 (255)
T ss_pred HHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999988877777666655655555444
No 28
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=3.4e-49 Score=338.13 Aligned_cols=212 Identities=22% Similarity=0.284 Sum_probs=179.4
Q ss_pred ccccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCCh
Q 024298 37 DYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 37 ~~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
.++-.......+++|+.|+||||.++|+++..++.||.++|..+++|+++.++||||.|+.||+|.|+.++.........
T Consensus 33 ~~~~~~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~ 112 (290)
T KOG1680|consen 33 FEPIKIELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVS 112 (290)
T ss_pred cCcceeEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccc
Confidence 33555566667889999999999999999999999999999999999999999999999999999999998763211111
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~ 196 (269)
. ..+...+..+.+.+||+||+|||+|+|||++|++.||+|||+++|+|++|+.++|++|.+||+++|+|.+|..
T Consensus 113 ---~---~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s 186 (290)
T KOG1680|consen 113 ---D---GIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKS 186 (290)
T ss_pred ---c---ccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChH
Confidence 1 1122333444589999999999999999999999999999999999999999999999999999999999995
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccH-HHHHHHHhc
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSS-YAAYNCFLS 254 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 254 (269)
|+++++||++++|+||+++||||+|||.++++.+|.+++.+.++-|..+ .+.++.+.+
T Consensus 187 ~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~~~K~svn~ 246 (290)
T KOG1680|consen 187 RALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVRADKESVNA 246 (290)
T ss_pred HHHHHHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988777766665554433 334444443
No 29
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=5.4e-48 Score=340.38 Aligned_cols=210 Identities=22% Similarity=0.337 Sum_probs=184.9
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhh
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
++.+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.| ++||+|.|++++... ....
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~----~~~~ 78 (260)
T PRK05809 3 LKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDL----NEEE 78 (260)
T ss_pred cceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhcc----ChHH
Confidence 56789999999999999999999999999999999999999999999999999999 999999999987542 1122
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 158 (260)
T PRK05809 79 GRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA 158 (260)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 233444556788899999999999999999999999999999999999999999999999999999999999999985 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|...
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 214 (260)
T PRK05809 159 KELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAI 214 (260)
T ss_pred HHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988777666555444444444433
No 30
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=3.8e-48 Score=341.11 Aligned_cols=210 Identities=19% Similarity=0.222 Sum_probs=182.2
Q ss_pred CcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhh
Q 024298 41 DQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 41 ~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
+.+.+++ +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++..... .....
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~ 80 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGY-IDDSG 80 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccc-cchhh
Confidence 4578888 899999999999999999999999999999999999999999999999 79999999987642110 11111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
... ..+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|+. +
T Consensus 81 ~~~--~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a 158 (259)
T TIGR01929 81 VHR--LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKA 158 (259)
T ss_pred HHH--HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHH
Confidence 111 1234577789999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|.+.
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 214 (259)
T TIGR01929 159 REIWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIRMLKAAL 214 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877777766666666666554
No 31
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.9e-48 Score=341.71 Aligned_cols=215 Identities=19% Similarity=0.268 Sum_probs=186.1
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEcCCCCccccCChhHHHHhhccC--C
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENP-DIGFVLMKGAGRAFCSGGDVIALYQLLNEG--K 115 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~-~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~--~ 115 (269)
+|+.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+ ++++|||||.|++||+|.|++++....... .
T Consensus 2 ~~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (266)
T PRK05981 2 QFKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSG 81 (266)
T ss_pred CcceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccccc
Confidence 4778999999999999999999999999999999999999999875 599999999999999999999875421111 0
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH
Q 024298 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
.+....+...++.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~ 161 (266)
T PRK05981 82 GDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGK 161 (266)
T ss_pred chhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHH
Confidence 01123344456778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
. +++++++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|++.
T Consensus 162 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~~ 220 (266)
T PRK05981 162 ARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALGLIRKLY 220 (266)
T ss_pred HHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 899999999999999999999999999999999977777666666554555555444
No 32
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.8e-48 Score=339.58 Aligned_cols=207 Identities=24% Similarity=0.302 Sum_probs=178.3
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|++.+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|.|++++... ....
T Consensus 1 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~~~- 76 (254)
T PRK08252 1 MSDEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARG---ERPS- 76 (254)
T ss_pred CCceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcc---cchh-
Confidence 456789999999999999999999999999999999999999999999999999999999999999987542 1111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.....+..+.. ..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 --~~~~~~~~~~~--~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 152 (254)
T PRK08252 77 --IPGRGFGGLTE--RPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA 152 (254)
T ss_pred --hhHHHHHHHHH--hcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHH
Confidence 11112222222 479999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++++||+++||||+|+|++++++++.+.+...+..|..+....|.+.
T Consensus 153 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 208 (254)
T PRK08252 153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVAASKRIV 208 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999877777666666555555555444
No 33
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=5.6e-48 Score=342.84 Aligned_cols=211 Identities=23% Similarity=0.330 Sum_probs=180.7
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhcc---CC----
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNE---GK---- 115 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~---~~---- 115 (269)
+..+.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...... .+
T Consensus 10 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 89 (275)
T PLN02664 10 IQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRS 89 (275)
T ss_pred EEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhh
Confidence 44455899999999999999999999999999999999999999999999999999999999987542110 01
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH
Q 024298 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
.+....+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+.|++|+++++++++|.
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 169 (275)
T PLN02664 90 GERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGY 169 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCH
Confidence 11223334455678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccC-ChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLN-GVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
. +++++++|++++|+||+++||||++||+ +++++++.+.+...+..|..+.+..|.+.
T Consensus 170 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l 229 (275)
T PLN02664 170 GNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVL 229 (275)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5 8999999999999999999999999995 88888877776666665555555555443
No 34
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.2e-48 Score=339.45 Aligned_cols=208 Identities=20% Similarity=0.277 Sum_probs=183.1
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHH
Q 024298 42 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKN 121 (269)
Q Consensus 42 ~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 121 (269)
.+.++++++|++|+||||++ |++|.+++.+|.++++.++.|+++++|||+|.|++||+|.|++++.... .......
T Consensus 3 ~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~---~~~~~~~ 78 (257)
T PRK07658 3 FLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVT---EAEQATE 78 (257)
T ss_pred eEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccC---chhhHHH
Confidence 58889999999999999986 9999999999999999999999999999999999999999999875421 1122233
Q ss_pred HHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHH
Q 024298 122 FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYL 200 (269)
Q Consensus 122 ~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l 200 (269)
+......++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++++
T Consensus 79 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 158 (257)
T PRK07658 79 LAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEM 158 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHH
Confidence 445566788899999999999999999999999999999999999999999999999999999999999999995 8999
Q ss_pred hccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 211 (257)
T PRK07658 159 MLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELL 211 (257)
T ss_pred HHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999988877666655555555555443
No 35
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.3e-48 Score=342.49 Aligned_cols=212 Identities=18% Similarity=0.217 Sum_probs=181.6
Q ss_pred cCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 40 QDQVLVEGR-AKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 40 ~~~v~~~~~-~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|+.+.++++ ++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++.... +.+...
T Consensus 4 ~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~-~~~~~~ 82 (265)
T PRK05674 4 FQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSA-DLDYNT 82 (265)
T ss_pred cceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcc-cccchh
Confidence 677999985 789999999999999999999999999999999999999999999999999999999875321 111111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.......+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ ++++++|.. +
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a 161 (265)
T PRK05674 83 NLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAA 161 (265)
T ss_pred hhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHH
Confidence 11222345678888999999999999999999999999999999999999999999999999988765 488889995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++|+|+||+++||||+|+|++++++++.+.+...+..|..+....|.+.
T Consensus 162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l 217 (265)
T PRK05674 162 RRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALRASKDLL 217 (265)
T ss_pred HHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877776666555555555444
No 36
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.9e-48 Score=345.99 Aligned_cols=214 Identities=21% Similarity=0.258 Sum_probs=184.1
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccC-----
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG----- 114 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~----- 114 (269)
++.+.++++++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|.|++++.......
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (296)
T PRK08260 3 YETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP 82 (296)
T ss_pred cceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccc
Confidence 556899999999999999999999999999999999999999999999999999999999999999875311000
Q ss_pred -------C-hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchH
Q 024298 115 -------K-FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGAS 186 (269)
Q Consensus 115 -------~-~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~ 186 (269)
. ......+.+....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~ 162 (296)
T PRK08260 83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASS 162 (296)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchh
Confidence 0 01112233445567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccc-cccHHHHHHHHh
Q 024298 187 FYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSL-CYSSYAAYNCFL 253 (269)
Q Consensus 187 ~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 253 (269)
++|++++|.. +++++++|++++|+||+++||||+|||++++++++.+.+...+.. +..+....|.+.
T Consensus 163 ~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~~~K~~l 231 (296)
T PRK08260 163 WFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVALTRQMM 231 (296)
T ss_pred hhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 9999999995 899999999999999999999999999999999988877777653 444555555444
No 37
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-48 Score=340.12 Aligned_cols=209 Identities=22% Similarity=0.337 Sum_probs=183.2
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|++.+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|++||+|.|++++...... .
T Consensus 1 m~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~----~ 76 (249)
T PRK05870 1 MMDPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGR----P 76 (249)
T ss_pred CCccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhccccc----c
Confidence 456789999999999999999999999999999999999999999999999999999999999999987642111 1
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.......+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 156 (249)
T PRK05870 77 AEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA 156 (249)
T ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence 123344555677789999999999999999999999999999999999999999999999999999999999999995 7
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++++||+++||||+++ +++++++.+.+...+..|..+....|...
T Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~~~K~~~ 210 (249)
T PRK05870 157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVLATKASM 210 (249)
T ss_pred HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999 67888877777777666655665555544
No 38
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.9e-48 Score=342.86 Aligned_cols=215 Identities=20% Similarity=0.268 Sum_probs=183.9
Q ss_pred ccCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccC---
Q 024298 39 LQDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG--- 114 (269)
Q Consensus 39 ~~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~--- 114 (269)
+++.+.++. +++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|.|++++.......
T Consensus 7 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 86 (276)
T PRK05864 7 TMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLT 86 (276)
T ss_pred CCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhccccccccc
Confidence 345588887 8899999999999999999999999999999999999999999999999999999999864311000
Q ss_pred ChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccC-CCchHHHHHhhh
Q 024298 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHP-DAGASFYLSHLP 193 (269)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~l~r~~ 193 (269)
.........+.+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~v 166 (276)
T PRK05864 87 RPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAI 166 (276)
T ss_pred chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhh
Confidence 1111122334556678889999999999999999999999999999999999999999999999997 788899999999
Q ss_pred hHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 194 GYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 194 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
|.. +++++++|++++|+||+++||||+++|++++++++.+.+...+..|..+.+..|...
T Consensus 167 G~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l 227 (276)
T PRK05864 167 GSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIELTKRTL 227 (276)
T ss_pred CHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 995 899999999999999999999999999999999988877777666555555555444
No 39
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.6e-48 Score=339.07 Aligned_cols=209 Identities=22% Similarity=0.256 Sum_probs=178.1
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++.... . ..
T Consensus 1 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~--~--~~ 76 (254)
T PRK08259 1 MSMSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGR--G--NR 76 (254)
T ss_pred CCceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhccc--c--hh
Confidence 4566899999999999999999999999999999999999999999999999999999999999999875321 1 11
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.... ....+...+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|.+|++++|++++|.. +
T Consensus 77 ~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 154 (254)
T PRK08259 77 LHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA 154 (254)
T ss_pred hhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 1100 011112223479999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|||++++++++.+.+...+..|..+.+..|.+.
T Consensus 155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~ 210 (254)
T PRK08259 155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLRADRLSA 210 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999977777666666555555555444
No 40
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=1.1e-47 Score=338.99 Aligned_cols=209 Identities=23% Similarity=0.327 Sum_probs=181.2
Q ss_pred cccCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCCh
Q 024298 38 YLQDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 38 ~~~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
...+.+.++. +++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|+|+.++..... ..
T Consensus 6 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~- 83 (265)
T PLN02888 6 VSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFK-GD- 83 (265)
T ss_pred CCCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhcc-ch-
Confidence 3556788886 78999999999999999999999999999999999999999999999999999999998653211 11
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~ 196 (269)
.. .....++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 84 --~~---~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 158 (265)
T PLN02888 84 --VK---DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGAN 158 (265)
T ss_pred --hh---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHH
Confidence 11 1224566778999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||++||++++++++.+.+...+..+..+.+..|++.
T Consensus 159 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 216 (265)
T PLN02888 159 RAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYKSVI 216 (265)
T ss_pred HHHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999977777766665554555555444
No 41
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-47 Score=338.22 Aligned_cols=208 Identities=21% Similarity=0.232 Sum_probs=180.4
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
+++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++..... ..
T Consensus 2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~---~~ 78 (259)
T PRK06494 2 ALPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGK---RG 78 (259)
T ss_pred CCceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCc---ch
Confidence 456799999999999999999999999999999999999999999999999999998 79999999998753211 11
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
. ....+..+. .+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 79 ~---~~~~~~~~~-~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 154 (259)
T PRK06494 79 W---PESGFGGLT-SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR 154 (259)
T ss_pred h---hhHHHHHHH-HHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence 0 011222233 34589999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 211 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIRASKQAV 211 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 899999999999999999999999999999999988877777666666666655554
No 42
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-47 Score=338.34 Aligned_cols=210 Identities=25% Similarity=0.341 Sum_probs=187.1
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
+.+.+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|++||+|.|+.++..... . .
T Consensus 3 ~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~--~--~ 78 (259)
T PRK06688 3 MVTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPP--K--P 78 (259)
T ss_pred CCCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCc--c--h
Confidence 34568999999999999999999999999999999999999999999999999999999999999998764211 1 1
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
..+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +
T Consensus 79 -~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 157 (259)
T PRK06688 79 -PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARA 157 (259)
T ss_pred -HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHH
Confidence 33455667788899999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|...
T Consensus 158 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l 213 (259)
T PRK06688 158 AEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALRYTKRAI 213 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877777666655555555444
No 43
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-47 Score=337.46 Aligned_cols=212 Identities=18% Similarity=0.250 Sum_probs=180.7
Q ss_pred cCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 40 QDQVLVEGR-AKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 40 ~~~v~~~~~-~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|+.+.++++ ++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|+.++..... .....
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~ 81 (262)
T PRK07468 3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMT-ADRAT 81 (262)
T ss_pred cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcc-cchhh
Confidence 456888886 6899999999999999999999999999999999999999999999999999999998753211 11111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.......+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++.+ +|.. +
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~~a 160 (262)
T PRK07468 82 RIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANA 160 (262)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHHHH
Confidence 1222344566888999999999999999999999999999999999999999999999999999999886654 7884 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++|+++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 161 ~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l 216 (262)
T PRK07468 161 RRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVAAAKALV 216 (262)
T ss_pred HHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999888777766666555555555444
No 44
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=4.8e-47 Score=350.01 Aligned_cols=229 Identities=75% Similarity=1.212 Sum_probs=204.8
Q ss_pred CcchhHHHhhhccceEeece-ecCccccccCCCCCCCccccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHH
Q 024298 1 MQRIKSLLRIKHSFKQVAFV-SHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYES 79 (269)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~ 79 (269)
|||.|.|-|..--...+++= -.+.|+|++.|+.-......+.|.++.++++++||||||+++|+||.+|+.+|.++|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~ 80 (407)
T PLN02851 1 MQRVKALRRVAVPLQWVRFGSVSYGRSFSALPNYAANDDLQDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYES 80 (407)
T ss_pred ChhHHHHHHHhhhccceeeeeecCCcccccCCcccccCCCCCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHH
Confidence 79999998876555545532 34678899999887777888899999999999999999999999999999999999999
Q ss_pred HhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhC
Q 024298 80 WEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQG 159 (269)
Q Consensus 80 ~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~c 159 (269)
++.|+++++|||+|.|++||+|+|++++.......+.+....++...+.+...+.++|||+||+|||+|+|||++|+++|
T Consensus 81 ~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~ 160 (407)
T PLN02851 81 WEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPG 160 (407)
T ss_pred HHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhC
Confidence 99999999999999999999999999986532222223455667777888889999999999999999999999999999
Q ss_pred CEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCHHHHHhcCccceeccCChHHH
Q 024298 160 MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYT 229 (269)
Q Consensus 160 D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~ 229 (269)
|+||++++++|++||+++|++|++|++++|+|++|..+.++++||++++++||+++||+|+++|++++.+
T Consensus 161 D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~ 230 (407)
T PLN02851 161 MFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNARLPL 230 (407)
T ss_pred CEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHHHHHHHhCCcCCHHHHHHCCCceeecCHhhHHH
Confidence 9999999999999999999999999999999999998999999999999999999999999999999843
No 45
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.7e-47 Score=335.21 Aligned_cols=208 Identities=19% Similarity=0.246 Sum_probs=184.5
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|+..+.++++++|++|+||||++.|++|.+++.+|.+++++++.|+++++|||+|.|++||+|.|+.++..... . +
T Consensus 3 ~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~--~-~- 78 (249)
T PRK07110 3 MKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQT--G-K- 78 (249)
T ss_pred CCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccc--h-h-
Confidence 68889999999999999999999999999999999999999999999999999999999999999998754211 1 1
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
..+. . ..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|+. +
T Consensus 79 -~~~~-~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 -GTFT-E-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred -hhHh-h-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 1122 2 4678889999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++++||+++||||+|+|++++++++.+.+...+..|..+.+..|+..
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 211 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLVLLKDHL 211 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999977777777666555555555444
No 46
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=1.4e-47 Score=336.08 Aligned_cols=202 Identities=20% Similarity=0.336 Sum_probs=179.5
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA-GRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||. |++||+|.|+.++... .......+...+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~----~~~~~~~~~~~~ 77 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKM----SPSEVQKFVNSL 77 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhcc----ChHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999998 4899999999987542 112234455666
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHhccCC
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLALTGE 205 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~ 205 (269)
..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|+++|+
T Consensus 78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~ 157 (251)
T PLN02600 78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGR 157 (251)
T ss_pred HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCC
Confidence 7788899999999999999999999999999999999999999999999999999999999999999995 899999999
Q ss_pred CCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 206 KLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 206 ~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++||+++||||+++|++++++++.+.+...+..|..+....|++.
T Consensus 158 ~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~~~K~~l 205 (251)
T PLN02600 158 RIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAKKAI 205 (251)
T ss_pred ccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999999999999977777767666555555555444
No 47
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=1.7e-47 Score=339.28 Aligned_cols=212 Identities=18% Similarity=0.233 Sum_probs=183.1
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
.++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++.... ....+
T Consensus 11 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~-~~~~~ 89 (273)
T PRK07396 11 EYEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGG-YVDDD 89 (273)
T ss_pred CCcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhccc-ccchh
Confidence 466799999999999999999999999999999999999999999999999999999 6999999999864211 00111
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
....+ ....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 90 ~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~ 167 (273)
T PRK07396 90 GVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKK 167 (273)
T ss_pred hhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHH
Confidence 11111 233567788999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+|||++++++++.+.+...+..|..+....|.+.
T Consensus 168 a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 224 (273)
T PRK07396 168 AREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAAL 224 (273)
T ss_pred HHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999988877777666655666655554
No 48
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=2.5e-47 Score=335.59 Aligned_cols=213 Identities=25% Similarity=0.367 Sum_probs=188.6
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.+..+.++.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++.. ......
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~---~~~~~~ 79 (257)
T COG1024 3 TYETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS---PEDGNA 79 (257)
T ss_pred CCCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc---ccchhH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999874 111122
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+....+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++|++|.. +
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a 159 (257)
T COG1024 80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRA 159 (257)
T ss_pred HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHH
Confidence 225667777899999999999999999999999999999999999999999999999999999889999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccC-ChHHHHHHHhhhhhccccccHHHHHHHHhc
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLN-GVRYTALYFTSLCVSSLCYSSYAAYNCFLS 254 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (269)
+++++||+.++++||+++||||+++++ +++++.+.+.+...+..|.+....+..+..
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~~~~a~~~~k~~~~~ 217 (257)
T COG1024 160 KELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAAPPLALAATKRLVRA 217 (257)
T ss_pred HHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999996 699999888888877655544444444443
No 49
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=1.6e-47 Score=334.56 Aligned_cols=206 Identities=27% Similarity=0.430 Sum_probs=186.4
Q ss_pred EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHH
Q 024298 44 LVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFF 123 (269)
Q Consensus 44 ~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 123 (269)
.++.+|+|++|+||+|++.|++|.+++.+|.++|+.++.|+++++||++|.+++||+|.|+.++... +.+....+.
T Consensus 1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~----~~~~~~~~~ 76 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS----DEEEAREFF 76 (245)
T ss_dssp EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH----HHHHHHHHH
T ss_pred CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc----ccccccccc
Confidence 4789999999999999989999999999999999999999999999999999999999999998875 355667888
Q ss_pred HHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHhc
Q 024298 124 ETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLAL 202 (269)
Q Consensus 124 ~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~l 202 (269)
+.++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++++++
T Consensus 77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l 156 (245)
T PF00378_consen 77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLL 156 (245)
T ss_dssp HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999995 799999
Q ss_pred cCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 203 TGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 203 tG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+|++++|+||+++||||+|+|++++.+++...+...+..|..+....|...
T Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~ 207 (245)
T PF00378_consen 157 TGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALRATKKAL 207 (245)
T ss_dssp HTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999999999999999966666666555444444444433
No 50
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=2.4e-47 Score=336.36 Aligned_cols=209 Identities=18% Similarity=0.284 Sum_probs=181.5
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
|++.+.++++++|++|+||||+ .|++|.+++.+|.++++.++.|+++++|||||.| ++||+|.|++++.... .. .
T Consensus 1 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~--~~-~ 76 (261)
T PRK03580 1 MSESLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGE--AP-D 76 (261)
T ss_pred CCceEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccC--cc-h
Confidence 3456899999999999999996 5999999999999999999999999999999999 7999999999875321 11 1
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
..+......++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 77 --~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~ 154 (261)
T PRK03580 77 --ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAI 154 (261)
T ss_pred --hhhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHH
Confidence 11112223456788999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 155 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 211 (261)
T PRK03580 155 ANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIAALKEIY 211 (261)
T ss_pred HHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999988877777666665665555544
No 51
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-47 Score=338.22 Aligned_cols=215 Identities=23% Similarity=0.283 Sum_probs=182.2
Q ss_pred ccCcEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEGRA-KSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~-~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
.|+.+.+++++ +|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|++||+|.|++++..........
T Consensus 3 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 82 (272)
T PRK06210 3 AYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRR 82 (272)
T ss_pred CcceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccc
Confidence 45779999998 99999999999999999999999999999999999999999999999999999999875421110000
Q ss_pred --hHHHH----HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHh
Q 024298 118 --DFKNF----FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSH 191 (269)
Q Consensus 118 --~~~~~----~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r 191 (269)
....+ ...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 162 (272)
T PRK06210 83 DTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPR 162 (272)
T ss_pred cccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHh
Confidence 00011 112345677899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhcc-ccccHHHHHHHHh
Q 024298 192 LPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSS-LCYSSYAAYNCFL 253 (269)
Q Consensus 192 ~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ 253 (269)
++|.. +++|+++|++++|+||+++||||+++|++++++++.+.+...+. .+..+....|...
T Consensus 163 ~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~~~~K~~l 226 (272)
T PRK06210 163 LVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMAVIKRQL 226 (272)
T ss_pred hhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99995 79999999999999999999999999999999998887777664 2333444444433
No 52
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-47 Score=335.45 Aligned_cols=208 Identities=23% Similarity=0.328 Sum_probs=184.4
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHH
Q 024298 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (269)
Q Consensus 41 ~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (269)
+.+.++++++|++|+||||++.|++|.+++.+|.++++.+ .|+++++|||+|.|++||+|.|++++... .......
T Consensus 6 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~---~~~~~~~ 81 (260)
T PRK07659 6 ESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSS---NDESKFD 81 (260)
T ss_pred ceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhc---cCchhHH
Confidence 5699999999999999999999999999999999999999 58899999999999999999999987542 1122234
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHH
Q 024298 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEY 199 (269)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~ 199 (269)
.+...+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 82 ~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~ 161 (260)
T PRK07659 82 GVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQ 161 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHH
Confidence 4556677888899999999999999999999999999999999999999999999999999999999999999995 899
Q ss_pred HhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++|++++|+||+++||||+++ ++++++++.+.+...+..|..+.+..|...
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l 214 (260)
T PRK07659 162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAMIETKQIY 214 (260)
T ss_pred HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999 788988877777777666665665555444
No 53
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=3.9e-47 Score=335.00 Aligned_cols=208 Identities=16% Similarity=0.199 Sum_probs=183.5
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-C-CCccccCChhHHHHhhccCChh
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA-G-RAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~-g-~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
++.+.++++++|++||||||++.|++|.+++.+|.++++.++.|+ +++|||||. | ++||+|.|++++.... .+
T Consensus 3 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~--~~-- 77 (261)
T PRK11423 3 MQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGG--RD-- 77 (261)
T ss_pred ccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcc--cc--
Confidence 457899999999999999999999999999999999999999887 999999996 3 8999999999875321 11
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
...+.+.+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 78 -~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~ 156 (261)
T PRK11423 78 -PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHI 156 (261)
T ss_pred -HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHH
Confidence 123345566788899999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+|||++++++.+.+.+...+..+..+.+..|...
T Consensus 157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~ 213 (261)
T PRK11423 157 VKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEQL 213 (261)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 899999999999999999999999999999999988888777666555555555544
No 54
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4e-47 Score=335.18 Aligned_cols=212 Identities=23% Similarity=0.268 Sum_probs=181.0
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|++.+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|++||+|.|+.++.... ......
T Consensus 1 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~-~~~~~~ 79 (262)
T PRK07509 1 MMDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSP-GNAVKL 79 (262)
T ss_pred CCceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhccc-chhhhh
Confidence 5778999999999999999999999999999999999999999999999999999999999999999875421 111111
Q ss_pred HH----HHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhh
Q 024298 119 FK----NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (269)
Q Consensus 119 ~~----~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g 194 (269)
.. .....+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 159 (262)
T PRK07509 80 LFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVR 159 (262)
T ss_pred HhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhC
Confidence 11 11233455677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
.. +++++++|++++|+||+++||||+++++ +++++.+.+...+..|..+....|.+.
T Consensus 160 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--~~~~a~~~a~~l~~~~~~~~~~~K~~l 217 (262)
T PRK07509 160 KDVARELTYTARVFSAEEALELGLVTHVSDD--PLAAALALAREIAQRSPDAIAAAKRLI 217 (262)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCChhhhhch--HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 95 8999999999999999999999999964 567777767666666555555555444
No 55
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=8.5e-47 Score=348.41 Aligned_cols=215 Identities=54% Similarity=0.926 Sum_probs=183.1
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
.+.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|+.++............
T Consensus 36 ~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 36 DYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 55688999999999999999999999999999999999999999999999999999999999999988643211112223
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEY 199 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~ 199 (269)
..++...+.+...|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+++
T Consensus 116 ~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~ 195 (401)
T PLN02157 116 REFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEY 195 (401)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHHH
Confidence 34555555677889999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred HhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHhc
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFLS 254 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (269)
|++||++++|+||+++||||++||++++.+....++......|..+...++.+..
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~ 250 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAE 250 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999998544333333344455555555555543
No 56
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.3e-47 Score=332.28 Aligned_cols=209 Identities=21% Similarity=0.299 Sum_probs=181.4
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
||+.+.++++++|++|+||||+ .|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++..... ....
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~--~~~~ 78 (257)
T PRK06495 2 MMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIK--GPGD 78 (257)
T ss_pred CcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccC--Cchh
Confidence 5778999999999999999998 599999999999999999999999999999999999999999998754211 1122
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+......++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|+. |+++++++++|.. +
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a 155 (257)
T PRK06495 79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT 155 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence 23344556678888999999999999999999999999999999999999999999999996 4567899999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++|+++|++++|+||+++||||+++|++++++++.+.+...+..|..+.+..|+..
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l 211 (257)
T PRK06495 156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATRLAKDAL 211 (257)
T ss_pred HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988777777666555555555444
No 57
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=1.4e-46 Score=333.98 Aligned_cols=212 Identities=19% Similarity=0.206 Sum_probs=180.8
Q ss_pred ccCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC--CCccccCChhHHHHhhccCC
Q 024298 39 LQDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG--RAFCSGGDVIALYQLLNEGK 115 (269)
Q Consensus 39 ~~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g--~~F~~G~Dl~~~~~~~~~~~ 115 (269)
.++.+.+++ +++|++||||||+ .|++|.+++.+|.++++++++|+++++|||||.| ++||+|.|+.++.... ..
T Consensus 9 ~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~--~~ 85 (278)
T PLN03214 9 ATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPK--TS 85 (278)
T ss_pred CCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccc--cc
Confidence 455799998 6999999999985 6999999999999999999999999999999998 6999999999875311 11
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccc-cCCCchHHHHHhhhh
Q 024298 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGF-HPDAGASFYLSHLPG 194 (269)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl-~p~~g~~~~l~r~~g 194 (269)
.+....+......++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ +|++++++++++++|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G 165 (278)
T PLN03214 86 AARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVID 165 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcC
Confidence 1112233344456778899999999999999999999999999999999999999999999999 599999999999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
.. +++++++|++++++||+++||||+|||++++++++.+.+...+..|..+....|.+.
T Consensus 166 ~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 225 (278)
T PLN03214 166 RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARAATKALL 225 (278)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 95 899999999999999999999999999999999877766666555554555445444
No 58
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.9e-46 Score=331.59 Aligned_cols=220 Identities=16% Similarity=0.152 Sum_probs=182.0
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcC-CCCccccCChhHHHHhhcc
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEE-----NPDIGFVLMKGA-GRAFCSGGDVIALYQLLNE 113 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~-----d~~v~~vVltg~-g~~F~~G~Dl~~~~~~~~~ 113 (269)
+-.+.++.+++|++|+|| |++.|++|.+++.+|.+++++++. |+++++|||+|. |++||+|.|+.++......
T Consensus 16 ~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~ 94 (287)
T PRK08788 16 QLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRA 94 (287)
T ss_pred ceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccc
Confidence 344777778999999996 888999999999999999999998 899999999999 7999999999987532111
Q ss_pred CChhhHHHHHHHHHHHHHHHc---cCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHH
Q 024298 114 GKFEDFKNFFETLYQFVYLQG---TFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLS 190 (269)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~i~---~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~ 190 (269)
.+.+....+.+.+...+.++. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~ 174 (287)
T PRK08788 95 GDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLA 174 (287)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHH
Confidence 111111222222233333333 79999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHhcCCccch
Q 024298 191 HLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFLSLPDRDF 260 (269)
Q Consensus 191 r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (269)
+++|.. +++++++|+.++++||++|||||+++|++++++++.+.+...+..|.+..++++.+......++
T Consensus 175 ~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~~~~~~a~k~~~~~~~~~~~ 245 (287)
T PRK08788 175 RRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRKLNGWRAMLRARRRVNPLSL 245 (287)
T ss_pred HHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcCccHHHHHHHHHHhhccCCH
Confidence 999995 8999999999999999999999999999999999888887777667767777665554444333
No 59
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-46 Score=331.18 Aligned_cols=212 Identities=19% Similarity=0.188 Sum_probs=183.7
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.+..+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.|++||+|.|++++..... ...+.
T Consensus 4 ~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~ 82 (260)
T PRK07827 4 VDTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGG-DPYDA 82 (260)
T ss_pred CCcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhccc-CchhH
Confidence 34568899999999999999999999999999999999999999999999999999999999999998754210 11112
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHH
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGE 198 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~ 198 (269)
...+...+.++++.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++++++..++
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~ 162 (260)
T PRK07827 83 AVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAA 162 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHH
Confidence 23345566778889999999999999999999999999999999999999999999999999999999999999876789
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++|++++|+||+++||||++++ ++++++...+...+..|..+.+..|.+.
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~~~~K~~l 215 (260)
T PRK07827 163 RYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQGLAESKALT 215 (260)
T ss_pred HHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999975 4888877777777666655666655554
No 60
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=1.2e-46 Score=343.11 Aligned_cols=190 Identities=39% Similarity=0.719 Sum_probs=169.7
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhhH
Q 024298 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 41 ~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
+.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|+.++............
T Consensus 3 ~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (342)
T PRK05617 3 DEVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAA 82 (342)
T ss_pred ceEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhH
Confidence 3588999999999999999999999999999999999999999999999999999 999999999987543211111111
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEY 199 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~ 199 (269)
..++.....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+++
T Consensus 83 ~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~ 162 (342)
T PRK05617 83 DRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTY 162 (342)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHH
Confidence 13444445678889999999999999999999999999999999999999999999999999999999999998877899
Q ss_pred HhccCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
++++|++++|+||+++||||+++|++++++.
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~ 193 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPAL 193 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHH
Confidence 9999999999999999999999999998865
No 61
>PLN02921 naphthoate synthase
Probab=100.00 E-value=4.2e-46 Score=336.96 Aligned_cols=212 Identities=17% Similarity=0.222 Sum_probs=182.4
Q ss_pred ccCcEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCC
Q 024298 39 LQDQVLVEG--RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGK 115 (269)
Q Consensus 39 ~~~~v~~~~--~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~ 115 (269)
.|+.|.+++ +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|+.++.... ...
T Consensus 63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~-~~~ 141 (327)
T PLN02921 63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDG-YVG 141 (327)
T ss_pred CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhccc-ccc
Confidence 577899998 589999999999999999999999999999999999999999999999 8999999999764310 011
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH
Q 024298 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
.+....+ ....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|.+|+++++++++|.
T Consensus 142 ~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~ 219 (327)
T PLN02921 142 PDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQ 219 (327)
T ss_pred hhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence 1111111 12346778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
. +++|+++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|...
T Consensus 220 ~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~~~K~~l 278 (327)
T PLN02921 220 KKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIRVLKSAL 278 (327)
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5 899999999999999999999999999999999987777766666555555555444
No 62
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.9e-46 Score=325.72 Aligned_cols=201 Identities=23% Similarity=0.335 Sum_probs=175.6
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++... ....+
T Consensus 2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~-------~~~~~ 74 (248)
T PRK06072 2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPD-------FAIDL 74 (248)
T ss_pred eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhh-------hHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999987531 11233
Q ss_pred HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhc
Q 024298 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLAL 202 (269)
Q Consensus 123 ~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~l 202 (269)
.+.++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.+++++++
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll 154 (248)
T PRK06072 75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILV 154 (248)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHH
Confidence 44566788889999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred cCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 203 TGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 203 tG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+|++++|+||+++||||++ +++++++.+.+...+..|..+....|.+.
T Consensus 155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~~~K~~l 202 (248)
T PRK06072 155 LGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYIAAKRMI 202 (248)
T ss_pred hCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999963 35677766666666666555555555444
No 63
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.8e-46 Score=332.20 Aligned_cols=212 Identities=19% Similarity=0.212 Sum_probs=179.2
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhc-c-----
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLN-E----- 113 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~-~----- 113 (269)
++.+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|.|+.++..... .
T Consensus 3 ~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~ 82 (288)
T PRK08290 3 YEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQ 82 (288)
T ss_pred CceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccccc
Confidence 5668999999999999999999999999999999999999999999999999999999999999998632111 0
Q ss_pred -----------CC-hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccC
Q 024298 114 -----------GK-FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHP 181 (269)
Q Consensus 114 -----------~~-~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p 181 (269)
.. ..........+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~ 161 (288)
T PRK08290 83 HPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-P 161 (288)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-C
Confidence 00 0011112234556778899999999999999999999999999999999999999999999999 4
Q ss_pred CCchHHHHHhhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 182 DAGASFYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 182 ~~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+ ++.+++++++|.. +++|+++|++|+|+||+++||||++||++++++++.+.+...+..|..+....|.+.
T Consensus 162 ~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~ 233 (288)
T PRK08290 162 G-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTKRAV 233 (288)
T ss_pred c-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4 4567789999995 799999999999999999999999999999999977777777666665665555544
No 64
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.3e-46 Score=333.32 Aligned_cols=212 Identities=19% Similarity=0.206 Sum_probs=178.7
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccC--C-
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG--K- 115 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~--~- 115 (269)
.++.+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|.|+.++....... .
T Consensus 8 ~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~ 87 (302)
T PRK08272 8 NLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGG 87 (302)
T ss_pred CCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccccc
Confidence 5678999999999999999999999999999999999999999999999999999999999999999876432100 0
Q ss_pred ----------------hhhH--HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccc
Q 024298 116 ----------------FEDF--KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQM 177 (269)
Q Consensus 116 ----------------~~~~--~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~ 177 (269)
+... ......+..++..+.++||||||+|||+|+|||++|+++||++||+++++|++||+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~ 167 (302)
T PRK08272 88 AYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRV 167 (302)
T ss_pred ccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhc
Confidence 0000 1223455667888999999999999999999999999999999999999999999998
Q ss_pred cccCCCchHHHHHhhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 178 GFHPDAGASFYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 178 Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
|.+|+. ..+++++|.. +++|+++|++|+|+||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 168 gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K~~l 241 (302)
T PRK08272 168 WGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVKLAV 241 (302)
T ss_pred ccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666643 3567789995 899999999999999999999999999999999977777666666655555555443
No 65
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=7.4e-46 Score=333.03 Aligned_cols=214 Identities=19% Similarity=0.213 Sum_probs=180.8
Q ss_pred cCcEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CCccccCChhHHHHh
Q 024298 40 QDQVLVEG--RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-------RAFCSGGDVIALYQL 110 (269)
Q Consensus 40 ~~~v~~~~--~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-------~~F~~G~Dl~~~~~~ 110 (269)
+.++.+++ +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++...
T Consensus 22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 44688888 899999999999999999999999999999999999999999999998 599999999875321
Q ss_pred h---ccCCh-h--hHHHH-HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEe-CCceEecCcccccccCC
Q 024298 111 L---NEGKF-E--DFKNF-FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVT-DKTVFSNPETQMGFHPD 182 (269)
Q Consensus 111 ~---~~~~~-~--~~~~~-~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~-~~a~f~~pe~~~Gl~p~ 182 (269)
. ..... + ..... ......+.+.+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~ 181 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG 181 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence 0 00000 0 00111 1112346677889999999999999999999999999999999 69999999999999999
Q ss_pred CchHHHHHhhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 183 AGASFYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 183 ~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|.. +++++++|++++|+||+++||||++||++++++++.+.+...+..|..+.+..|.+.
T Consensus 182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 253 (302)
T PRK08321 182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRMLKYAF 253 (302)
T ss_pred chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999995 899999999999999999999999999999999988877777776666666655554
No 66
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.8e-46 Score=325.41 Aligned_cols=201 Identities=19% Similarity=0.171 Sum_probs=173.3
Q ss_pred EEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHH
Q 024298 46 EGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFET 125 (269)
Q Consensus 46 ~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~ 125 (269)
+++++|++|+||||++ |++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++... ..........+.
T Consensus 7 ~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~---~~~~~~~~~~~~ 82 (249)
T PRK07938 7 TPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQAT---PGFTALIDANRG 82 (249)
T ss_pred ccCCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhc---cchhHHHHHHHH
Confidence 3578999999999985 999999999999999999999999999999999999999999987531 111222223344
Q ss_pred HHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHhccC
Q 024298 126 LYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLALTG 204 (269)
Q Consensus 126 ~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG 204 (269)
...++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |+++++++++|.. +++++++|
T Consensus 83 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg 159 (249)
T PRK07938 83 CFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTA 159 (249)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhC
Confidence 5667888999999999999999999999999999999999999999999999986 4567899999995 89999999
Q ss_pred CCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 205 EKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 205 ~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++|+||+++||||++||++++++++.+.+...+..|..+....|...
T Consensus 160 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 208 (249)
T PRK07938 160 ATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIRAAKEAL 208 (249)
T ss_pred CcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999988877776666555555555544
No 67
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.2e-45 Score=340.41 Aligned_cols=189 Identities=43% Similarity=0.755 Sum_probs=169.1
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++....... ..
T Consensus 9 ~~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~--~~ 86 (379)
T PLN02874 9 AEEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESD--DS 86 (379)
T ss_pred CCCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccc--hH
Confidence 4456889999999999999999999999999999999999999999999999999999999999999875421111 11
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHH
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGE 198 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~ 198 (269)
........+.+...+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..++
T Consensus 87 ~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~~a~ 166 (379)
T PLN02874 87 CLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGE 166 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHHHHH
Confidence 22233344456778999999999999999999999999999999999999999999999999999999999999998789
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHH
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYT 229 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~ 229 (269)
+|++||++++++||+++||||++||++++++
T Consensus 167 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~ 197 (379)
T PLN02874 167 YLALTGARLNGKEMVACGLATHFVPSEKLPE 197 (379)
T ss_pred HHHHcCCcccHHHHHHcCCccEEeCHHHHHH
Confidence 9999999999999999999999999998876
No 68
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=1e-45 Score=324.09 Aligned_cols=199 Identities=22% Similarity=0.247 Sum_probs=168.2
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
|.++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++.. ......
T Consensus 3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~-------~~~~~~ 74 (251)
T TIGR03189 3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMP-------DQCAAM 74 (251)
T ss_pred EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCc-------hhHHHH
Confidence 678889999999999997 599999999999999999999999999999999999999999987531 111233
Q ss_pred HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHh
Q 024298 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLA 201 (269)
Q Consensus 123 ~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ 201 (269)
......++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++ ++++|++++|+. +++|+
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~ 153 (251)
T TIGR03189 75 LASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLL 153 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHH
Confidence 4455678889999999999999999999999999999999999999999999999999874 578899999995 89999
Q ss_pred ccCCCCCHHHHHhcCccceeccCChHHHHHHHh-hhhhccccccHHHHHHHH
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGVRYTALYFT-SLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (269)
++|++++|+||+++||||+|+|+.+ +++.+. +...+..|..+.+..|..
T Consensus 154 ltg~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~~~K~~ 203 (251)
T TIGR03189 154 YSGRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLRFAVRA 203 (251)
T ss_pred HcCCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999998644 333333 444444444444444433
No 69
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.6e-46 Score=322.92 Aligned_cols=197 Identities=21% Similarity=0.274 Sum_probs=170.3
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
+.++++++|++||||||++.|++|.+|+.+|.+++++++.+ ++++|||||.|++||+|.|+++... ...+
T Consensus 2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~---------~~~~ 71 (243)
T PRK07854 2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY---------ADDF 71 (243)
T ss_pred ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh---------HHHH
Confidence 57888999999999999999999999999999999999865 8999999999999999999985211 1223
Q ss_pred HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHh
Q 024298 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLA 201 (269)
Q Consensus 123 ~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ 201 (269)
.+.+..+++.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+. +++++
T Consensus 72 ~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ 151 (243)
T PRK07854 72 PDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML 151 (243)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence 44556788889999999999999999999999999999999999999999999999999999999999999995 89999
Q ss_pred ccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++|++++|+||+++||||+|++ ++ ++.+.+...+..|..+.+..|.+.
T Consensus 152 ltg~~~~a~eA~~~Glv~~v~~---~~-~a~~~a~~l~~~~~~a~~~~K~~l 199 (243)
T PRK07854 152 LGAEKLTAEQALATGMANRIGT---LA-DAQAWAAEIAGLAPLALQHAKRVL 199 (243)
T ss_pred HcCCCcCHHHHHHCCCcccccC---HH-HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999975 23 555555555555555555555444
No 70
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-45 Score=318.10 Aligned_cols=207 Identities=15% Similarity=0.101 Sum_probs=179.5
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|++++.++++++|++|+||||+ .|++|.+++.+|.++++.++ +++++||++|.|++||+|.|++++... .+.
T Consensus 1 ~~~~i~~~~~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~-----~~~ 72 (229)
T PRK06213 1 MSELVSYTLEDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG-----AQA 72 (229)
T ss_pred CcceEEEEecCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc-----hHh
Confidence 3557899999999999999984 69999999999999999988 457999999999999999999987531 222
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC-ceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
...+......++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++++..++++.+|..
T Consensus 73 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~ 152 (229)
T PRK06213 73 AIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSA 152 (229)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHH
Confidence 3445566677888999999999999999999999999999999999999 99999999999998888888899999985
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+|+|++++.+++.+.+...+..|..+....|...
T Consensus 153 a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 209 (229)
T PRK06213 153 FQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHAATKLKV 209 (229)
T ss_pred HHHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 799999999999999999999999999999999977766666665555555555444
No 71
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=3.7e-45 Score=336.34 Aligned_cols=215 Identities=43% Similarity=0.750 Sum_probs=184.6
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
...|.++++++|++|+||||++.|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++++............
T Consensus 8 ~~~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~ 87 (381)
T PLN02988 8 QSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLG 87 (381)
T ss_pred CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHH
Confidence 34588899999999999999999999999999999999999999999999999999999999999987532211111222
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEY 199 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~ 199 (269)
..++...+.+...+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+++
T Consensus 88 ~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~~~~~ 167 (381)
T PLN02988 88 ANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEY 167 (381)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHHHHHH
Confidence 23344444566788999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHhc
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFLS 254 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (269)
|++||++++|+||+++||||++||++++++.+.+.+......|..+..+++.+..
T Consensus 168 l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~ 222 (381)
T PLN02988 168 VGLTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQ 222 (381)
T ss_pred HHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhc
Confidence 9999999999999999999999999999987777665445555556656665543
No 72
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-45 Score=330.40 Aligned_cols=210 Identities=21% Similarity=0.258 Sum_probs=169.6
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHH-H---hh-ccC
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALY-Q---LL-NEG 114 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~-~---~~-~~~ 114 (269)
++.+.++++++|++|+||||+++|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|.|+++.. . .. ...
T Consensus 4 ~~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~ 83 (298)
T PRK12478 4 FQTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDG 83 (298)
T ss_pred ceEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccccc
Confidence 456899999999999999999999999999999999999999999999999999999999999998621 1 00 000
Q ss_pred ChhhHHHH---HH---HHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccc-cccCCCchHH
Q 024298 115 KFEDFKNF---FE---TLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQM-GFHPDAGASF 187 (269)
Q Consensus 115 ~~~~~~~~---~~---~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~-Gl~p~~g~~~ 187 (269)
..+....+ .. ....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++ |+++ ++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~ 161 (298)
T PRK12478 84 RWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW 161 (298)
T ss_pred ccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH
Confidence 00111111 01 11235667889999999999999999999999999999999999999999997 8875 2333
Q ss_pred HHHhhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 188 YLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 188 ~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+ +++|.. +++|+++|++|+|+||+++||||+|||++++++++.+.+...+..|..+.+..|.+.
T Consensus 162 -~-~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l 226 (298)
T PRK12478 162 -L-YRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQKLIV 226 (298)
T ss_pred -H-HHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2 458884 899999999999999999999999999999999977776666555555555555443
No 73
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1e-44 Score=318.59 Aligned_cols=206 Identities=19% Similarity=0.236 Sum_probs=169.6
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
|+.+.++++++|++|+||||++.|++|.+++.+|.++++.++ +++++|||+|.|++||+|.|++++...... . ...
T Consensus 3 ~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~-~-~~~ 78 (255)
T PRK07112 3 YQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDA-G-RAD 78 (255)
T ss_pred CceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhcccc-c-hhh
Confidence 566999999999999999999999999999999999999998 359999999999999999999987542111 1 111
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
....+.+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ ..++++++|.. ++
T Consensus 79 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~ 157 (255)
T PRK07112 79 LIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAH 157 (255)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHH
Confidence 11233445688889999999999999999999999999999999999999999999999999865 46799999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
+++++|++++|+||+++||||+++|+++. .+.+.+...+..|..+.+..|.+
T Consensus 158 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~~~K~~ 209 (255)
T PRK07112 158 YMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVARYKSY 209 (255)
T ss_pred HHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999997664 33444444444444444444433
No 74
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=1.4e-43 Score=308.40 Aligned_cols=196 Identities=15% Similarity=0.152 Sum_probs=166.6
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEcCCCCccccCChhHHHHhhccCChhhHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIG-FVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKN 121 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~-~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 121 (269)
+.++++++|++|+||||++ |++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++... ....+....
T Consensus 2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~--~~~~~~~~~ 78 (239)
T PLN02267 2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA--GSAPSRLHL 78 (239)
T ss_pred ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc--ccCHHHHHH
Confidence 5778899999999999985 9999999999999999999998865 78889999999999999986431 111222233
Q ss_pred HHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEe-CCceEecCcccccccCCCchHHHHHhhhhH-HH-H
Q 024298 122 FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVT-DKTVFSNPETQMGFHPDAGASFYLSHLPGY-LG-E 198 (269)
Q Consensus 122 ~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~-~a-~ 198 (269)
+...+.+++.++.++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++.++++++|. ++ +
T Consensus 79 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~ 158 (239)
T PLN02267 79 MVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARR 158 (239)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHH
Confidence 44566778889999999999999999999999999999999998 568999999999997434457889999987 47 6
Q ss_pred HHhccCCCCCHHHHHhcCccceeccC-ChHHHHHHHhhhhhccc
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLN-GVRYTALYFTSLCVSSL 241 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~~~~~~~~~ 241 (269)
+++++|++++|+||+++||||+++|+ +++++++.+.+...+..
T Consensus 159 ~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~ 202 (239)
T PLN02267 159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAAR 202 (239)
T ss_pred HHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999999985 68888877777666655
No 75
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=4.1e-43 Score=316.05 Aligned_cols=176 Identities=19% Similarity=0.315 Sum_probs=160.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhhHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQF 129 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l 129 (269)
+++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++..... ........+.+.++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~-~~~~~~~~~~~~~~~l 116 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYA-GNPQEYRQYMRLFNDM 116 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcc-cChhHHHHHHHHHHHH
Confidence 556999999999999999999999999999999999999999999 69999999998765321 1122334455666778
Q ss_pred HHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHhccCCCCC
Q 024298 130 VYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLALTGEKLN 208 (269)
Q Consensus 130 ~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~i~ 208 (269)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |++++++|++++
T Consensus 117 ~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s 196 (360)
T TIGR03200 117 VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS 196 (360)
T ss_pred HHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence 8899999999999999999999999999999999999999999999999999999999999999995 899999999999
Q ss_pred HHHHHhcCccceeccCChH
Q 024298 209 GVEMIACGLATHYTLNGVR 227 (269)
Q Consensus 209 a~eA~~~GLv~~vv~~~~l 227 (269)
|+||+++||||+++|+.++
T Consensus 197 A~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 197 AHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred HHHHHHcCChheecCchhc
Confidence 9999999999999999998
No 76
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=3.9e-42 Score=339.76 Aligned_cols=198 Identities=19% Similarity=0.275 Sum_probs=177.9
Q ss_pred cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHH
Q 024298 42 QVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (269)
Q Consensus 42 ~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (269)
.+.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .......
T Consensus 7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~~~~ 85 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFA-APEEELS 85 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhcc-CCHHHHH
Confidence 577774 78999999999999999999999999999999999999999999999999999999998754211 1122234
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHH
Q 024298 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEY 199 (269)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~ 199 (269)
.+.+.++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 86 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~ 165 (715)
T PRK11730 86 QWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALE 165 (715)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHH
Confidence 5556677788899999999999999999999999999999999999999999999999999999999999999995 899
Q ss_pred HhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhcc
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSS 240 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~ 240 (269)
++++|++++|+||+++||||+++|++++++++.+.+...+.
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~ 206 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIA 206 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999988887766553
No 77
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=7.2e-42 Score=325.89 Aligned_cols=208 Identities=13% Similarity=0.094 Sum_probs=175.7
Q ss_pred cEEEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCCCC-ccccCChhH
Q 024298 42 QVLVEGRAKSRAAILNRPSNL-------------NALNTSMVGRLKRLYESWE-ENPDIGFVLMKGAGRA-FCSGGDVIA 106 (269)
Q Consensus 42 ~v~~~~~~~v~~I~ln~p~~~-------------Nal~~~~~~eL~~~l~~~~-~d~~v~~vVltg~g~~-F~~G~Dl~~ 106 (269)
.+.++++++|++||||||++. |+++.+|+.+|.++++.++ +|+++++|||||.|+. ||+|.|+..
T Consensus 259 ~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~ 338 (546)
T TIGR03222 259 DVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALL 338 (546)
T ss_pred EEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccc
Confidence 355667899999999999999 9999999999999999998 4599999999999987 999999984
Q ss_pred HHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEE-chhcchhh-HHHHHhCCEEEE-------eCCceEecCcccc
Q 024298 107 LYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL-DGITMGCG-AGISLQGMYRVV-------TDKTVFSNPETQM 177 (269)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav-~G~a~GgG-~~Lal~cD~~ia-------~~~a~f~~pe~~~ 177 (269)
... .+...........+.++.+|..+|||+||+| ||+|+||| ++|+++||++|+ +++++|++||+++
T Consensus 339 ~~~----~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~l 414 (546)
T TIGR03222 339 EAH----KDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNF 414 (546)
T ss_pred ccc----ccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcccc
Confidence 211 1111112233344567889999999999999 89999999 999999999999 8999999999999
Q ss_pred cccCCCchHHHHHhhh-hH-HH--HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 178 GFHPDAGASFYLSHLP-GY-LG--EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 178 Gl~p~~g~~~~l~r~~-g~-~a--~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
|++|++|++++|++++ |. ++ ++++++|++|+|+||+++|||++++|++++++++.+.+...+..+..+.+..|...
T Consensus 415 Gl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l 494 (546)
T TIGR03222 415 GLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALTGLEANL 494 (546)
T ss_pred ccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999998 87 46 66999999999999999999999999999999977776666655554555555443
No 78
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.2e-41 Score=324.26 Aligned_cols=208 Identities=17% Similarity=0.180 Sum_probs=175.1
Q ss_pred CCCCCccccCcEEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcC-CCCcc
Q 024298 32 DYSSNDYLQDQVLVEGRAKSRAAILNRPS----------NLNALNTSMVGRLKRLYESWE-ENPDIGFVLMKGA-GRAFC 99 (269)
Q Consensus 32 ~~~~~~~~~~~v~~~~~~~v~~I~ln~p~----------~~Nal~~~~~~eL~~~l~~~~-~d~~v~~vVltg~-g~~F~ 99 (269)
++++.|+.++++.++++++|++|+||||+ +.|++|.+|+.+|.++|+.++ .|+++|+|||||. |++||
T Consensus 2 ~~~~~~~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~Fc 81 (546)
T TIGR03222 2 DFRTEPSQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFC 81 (546)
T ss_pred CccCCCCCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCc
Confidence 35566778889999999999999999975 899999999999999999999 7899999999997 59999
Q ss_pred ccCChhHHHHhhccCChhhHHHHH-HHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC--ceEecCccc
Q 024298 100 SGGDVIALYQLLNEGKFEDFKNFF-ETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK--TVFSNPETQ 176 (269)
Q Consensus 100 ~G~Dl~~~~~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~ 176 (269)
+|.|++++........ ....... .....+.+.+..+||||||+|||+|+|||++|+++||+||++++ ++|++||++
T Consensus 82 aG~DL~~~~~~~~~~~-~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~ 160 (546)
T TIGR03222 82 SGANIFMLGLSTHAWK-VNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVP 160 (546)
T ss_pred CCcCHHHHhccccchh-hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchh
Confidence 9999998743211111 1111111 12234556778899999999999999999999999999999986 799999997
Q ss_pred -ccccCCCchHHHHH--hhhhH-HHHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhcc
Q 024298 177 -MGFHPDAGASFYLS--HLPGY-LGEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSS 240 (269)
Q Consensus 177 -~Gl~p~~g~~~~l~--r~~g~-~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~ 240 (269)
+|++|++|+..++. +.+|. +|++|+++|++++++||++|||||++||++++++++.+.+...+.
T Consensus 161 ~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~ 228 (546)
T TIGR03222 161 LLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAA 228 (546)
T ss_pred ccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHh
Confidence 99999999998887 68888 489999999999999999999999999999999987776655543
No 79
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=8.3e-42 Score=326.38 Aligned_cols=211 Identities=16% Similarity=0.066 Sum_probs=174.8
Q ss_pred ccCcEEEE--EeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEcCC-CCcccc
Q 024298 39 LQDQVLVE--GRAKSRAAILNRPSNL-------------NALNTSMVGRLKRLYESWEE-NPDIGFVLMKGAG-RAFCSG 101 (269)
Q Consensus 39 ~~~~v~~~--~~~~v~~I~ln~p~~~-------------Nal~~~~~~eL~~~l~~~~~-d~~v~~vVltg~g-~~F~~G 101 (269)
.|+++.++ ++++|++||||||++. |++|.+|+.+|.++++.++. |+++|+|||||.| ++||+|
T Consensus 258 ~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG 337 (550)
T PRK08184 258 RYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLA 337 (550)
T ss_pred eeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeC
Confidence 45555555 4689999999999987 68999999999999999986 7999999999999 599999
Q ss_pred CChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEc-hhcchhh-HHHHHhCCEEEEe-------CCceEec
Q 024298 102 GDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILD-GITMGCG-AGISLQGMYRVVT-------DKTVFSN 172 (269)
Q Consensus 102 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~-G~a~GgG-~~Lal~cD~~ia~-------~~a~f~~ 172 (269)
.|++... . .+..........+..++.++..+||||||+|| |+|+||| ++|+++||++|++ ++++|++
T Consensus 338 ~Dl~~~~-~---~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~ 413 (550)
T PRK08184 338 ADATLLA-H---KDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITL 413 (550)
T ss_pred CChhhhc-c---cchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEEC
Confidence 9987321 1 11111122334455678899999999999997 9999999 9999999999999 9999999
Q ss_pred CcccccccCCCchHHHHHhh-hhHH-HHHH--hccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHH
Q 024298 173 PETQMGFHPDAGASFYLSHL-PGYL-GEYL--ALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAA 248 (269)
Q Consensus 173 pe~~~Gl~p~~g~~~~l~r~-~g~~-a~~l--~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~ 248 (269)
||+++|++|++|++++|+++ +|.. ++++ +++|++++|+||+++||||+++|++++++++.+.+...+..+..+.+.
T Consensus 414 pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~ 493 (550)
T PRK08184 414 SALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALTG 493 (550)
T ss_pred ccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999988 6995 7775 599999999999999999999999999999777766665554444444
Q ss_pred HHHHh
Q 024298 249 YNCFL 253 (269)
Q Consensus 249 ~~~~~ 253 (269)
.|...
T Consensus 494 ~K~~l 498 (550)
T PRK08184 494 MEANL 498 (550)
T ss_pred HHHHH
Confidence 44333
No 80
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=2.5e-41 Score=285.11 Aligned_cols=192 Identities=29% Similarity=0.476 Sum_probs=176.1
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
+.+++++++++|+||+|++.|++|.+++++|.++++.++.|+++++|||+|.|+.||+|.|+.++....... +...++
T Consensus 1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~--~~~~~~ 78 (195)
T cd06558 1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAG--EEARAF 78 (195)
T ss_pred CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccc--hhHHHH
Confidence 467888999999999999899999999999999999999999999999999999999999999987642211 135677
Q ss_pred HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHh
Q 024298 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLA 201 (269)
Q Consensus 123 ~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ 201 (269)
.+.++.++.++..+|||+||++||+|.|+|++++++||+||++++++|++||+++|++|+.|+++++++++|.. +.+++
T Consensus 79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~ 158 (195)
T cd06558 79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158 (195)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999885 79999
Q ss_pred ccCCCCCHHHHHhcCccceeccCChHHHHHHHhhh
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSL 236 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~ 236 (269)
++|++++++||+++||||++++++++.+++.+.+.
T Consensus 159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~ 193 (195)
T cd06558 159 LTGRRISAEEALELGLVDEVVPDEELLAAALELAR 193 (195)
T ss_pred HcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHh
Confidence 99999999999999999999999999888665543
No 81
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.6e-40 Score=328.25 Aligned_cols=196 Identities=20% Similarity=0.302 Sum_probs=174.3
Q ss_pred ccCcEEEEE-eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCC
Q 024298 39 LQDQVLVEG-RAKSRAAILNRP-SNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGK 115 (269)
Q Consensus 39 ~~~~v~~~~-~~~v~~I~ln~p-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~ 115 (269)
|-..+.+++ +++|++|+|||| ++.|++|.+++.+|.++++.++.|+++++|||+|.+ ++||+|+|+.++... ..
T Consensus 3 ~~~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~---~~ 79 (708)
T PRK11154 3 MASAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAAC---KT 79 (708)
T ss_pred CCceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhcc---CC
Confidence 444577888 789999999999 589999999999999999999999999999999875 899999999987532 11
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC--ceEecCcccccccCCCchHHHHHhhh
Q 024298 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK--TVFSNPETQMGFHPDAGASFYLSHLP 193 (269)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~~ 193 (269)
.+....+.+....++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~v 159 (708)
T PRK11154 80 AQEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLI 159 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhc
Confidence 2222334455667888999999999999999999999999999999999996 59999999999999999999999999
Q ss_pred hHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhh
Q 024298 194 GYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLC 237 (269)
Q Consensus 194 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~ 237 (269)
|.. |++|+++|++++|+||+++||||+++|++++++++.+.+..
T Consensus 160 G~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~ 204 (708)
T PRK11154 160 GVSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKK 204 (708)
T ss_pred CHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHh
Confidence 995 89999999999999999999999999999999888887766
No 82
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=6.1e-41 Score=330.77 Aligned_cols=195 Identities=16% Similarity=0.233 Sum_probs=175.4
Q ss_pred cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHH
Q 024298 42 QVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (269)
Q Consensus 42 ~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (269)
.+.++. +++|++|+||||++.|++|.+++.+|.+++++++.|+++++|||+|.|++||+|+|++++..... .......
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~~ 85 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFA-LPDAELI 85 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhccc-CCHHHHH
Confidence 577774 78999999999999999999999999999999999999999999999999999999999854211 1122334
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHH
Q 024298 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEY 199 (269)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~ 199 (269)
.+.+..+.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. +++
T Consensus 86 ~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~ 165 (714)
T TIGR02437 86 QWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALE 165 (714)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 4555667788999999999999999999999999999999999999999999999999999999999999999995 799
Q ss_pred HhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhh
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLC 237 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~ 237 (269)
|+++|++++|+||+++||||+++|++++++++.+.+..
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~ 203 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKD 203 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHH
Confidence 99999999999999999999999999999888776644
No 83
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=6.3e-42 Score=284.98 Aligned_cols=220 Identities=23% Similarity=0.298 Sum_probs=183.7
Q ss_pred CCccccCcEEEEE---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhh
Q 024298 35 SNDYLQDQVLVEG---RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLL 111 (269)
Q Consensus 35 ~~~~~~~~v~~~~---~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~ 111 (269)
.+...|+.+.+.+ ++.|..+.||||.|.|++|..|+.|+.++++.+..||++|+|||+|+|++||+|+|+..+....
T Consensus 13 ~~~~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~ 92 (292)
T KOG1681|consen 13 SPDHSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDR 92 (292)
T ss_pred CCccccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhh
Confidence 3334566666653 4569999999999999999999999999999999999999999999999999999987765432
Q ss_pred cc---C-----ChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCC
Q 024298 112 NE---G-----KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDA 183 (269)
Q Consensus 112 ~~---~-----~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~ 183 (269)
.. . .....++....+++-+..|.+||||+|++|||+|+|+|+.|..+||+|+|++++.|+.-|+.+|+..+.
T Consensus 93 ~~~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADv 172 (292)
T KOG1681|consen 93 ILQPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADV 172 (292)
T ss_pred ccccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhch
Confidence 11 1 123455666778888999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhhhHH--HHHHhccCCCCCHHHHHhcCccceeccCChH-HHHHHH-hhhhhccccccHHHHHHHHhc
Q 024298 184 GASFYLSHLPGYL--GEYLALTGEKLNGVEMIACGLATHYTLNGVR-YTALYF-TSLCVSSLCYSSYAAYNCFLS 254 (269)
Q Consensus 184 g~~~~l~r~~g~~--a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l-~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 254 (269)
|...+|+..+|.. ++++.+|++.|+|.||++.|||.+|+|+.+. ++.+.- +.+.+.+.|-.+...+..+..
T Consensus 173 GTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~y 247 (292)
T KOG1681|consen 173 GTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQGTKENLLY 247 (292)
T ss_pred hhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeeechHHHHHH
Confidence 9999999999964 6999999999999999999999999998554 455333 444445556655555555543
No 84
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=2e-40 Score=327.78 Aligned_cols=183 Identities=21% Similarity=0.322 Sum_probs=165.1
Q ss_pred ccCcEEEEEeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEcCCCCccccCChhHHHHhhccCCh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFV-LMKGAGRAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~v-Vltg~g~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
.++.+.++++|+|++|+||||+ +.|++|.+++.+|.+++++++.|+++++| |++|.|++||+|+|++++... ...
T Consensus 11 ~~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~---~~~ 87 (737)
T TIGR02441 11 ARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAAC---KTA 87 (737)
T ss_pred CCCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhcc---CCh
Confidence 3456899999999999999998 58999999999999999999999999965 579999999999999998531 122
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC--ceEecCcccccccCCCchHHHHHhhhh
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK--TVFSNPETQMGFHPDAGASFYLSHLPG 194 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~~g 194 (269)
+....+....+.++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|
T Consensus 88 ~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 88 QEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence 334455566778889999999999999999999999999999999999987 589999999999999999999999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccC
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~ 224 (269)
.. |++|+++|++++|+||+++||||+|+|+
T Consensus 168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 95 8999999999999999999999999997
No 85
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=3.8e-40 Score=324.90 Aligned_cols=188 Identities=20% Similarity=0.299 Sum_probs=169.0
Q ss_pred EEeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCCccccCChhHHHHhhccCChhhHHHHH
Q 024298 46 EGRAKSRAAILNRP-SNLNALNTSMVGRLKRLYESWEENPDIGFVLM-KGAGRAFCSGGDVIALYQLLNEGKFEDFKNFF 123 (269)
Q Consensus 46 ~~~~~v~~I~ln~p-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl-tg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 123 (269)
+.+++|++|+|||| ++.|++|.+|+.+|.++|+.++.|+++++||| +|.|++||+|+|++++... ........+.
T Consensus 6 ~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~---~~~~~~~~~~ 82 (699)
T TIGR02440 6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAAC---QTAGEAKALA 82 (699)
T ss_pred EcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhcc---CChhHHHHHH
Confidence 45789999999999 68999999999999999999999999999986 6788999999999987532 1122233445
Q ss_pred HHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC--ceEecCcccccccCCCchHHHHHhhhhHH-HHHH
Q 024298 124 ETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK--TVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYL 200 (269)
Q Consensus 124 ~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l 200 (269)
+..+.++..+.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|.. +++|
T Consensus 83 ~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~l 162 (699)
T TIGR02440 83 QQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDM 162 (699)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHH
Confidence 56677888999999999999999999999999999999999985 79999999999999999999999999995 7999
Q ss_pred hccCCCCCHHHHHhcCccceeccCChHHHHHHHhhh
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSL 236 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~ 236 (269)
+++|++++++||+++||||+++|++++++++.+.+.
T Consensus 163 lltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~ 198 (699)
T TIGR02440 163 ILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMAL 198 (699)
T ss_pred HHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHH
Confidence 999999999999999999999999999998888775
No 86
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=8.4e-40 Score=312.60 Aligned_cols=204 Identities=16% Similarity=0.152 Sum_probs=170.6
Q ss_pred ccccCcEEEEEeCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCC-CCccccCCh
Q 024298 37 DYLQDQVLVEGRAKSRAAILNRP-------S---NLNALNTSMVGRLKRLYESWE-ENPDIGFVLMKGAG-RAFCSGGDV 104 (269)
Q Consensus 37 ~~~~~~v~~~~~~~v~~I~ln~p-------~---~~Nal~~~~~~eL~~~l~~~~-~d~~v~~vVltg~g-~~F~~G~Dl 104 (269)
+..++.+.++++++|++|+|||| + +.|++|.+|+.+|.+++++++ .|+++++|||||.+ ++||+|.|+
T Consensus 11 ~~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL 90 (550)
T PRK08184 11 PSQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI 90 (550)
T ss_pred CCCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence 34678899999999999999965 3 899999999999999999998 78999999999985 899999999
Q ss_pred hHHHHhhccCChhhHHHHHH-HHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC--ceEecCccc-cccc
Q 024298 105 IALYQLLNEGKFEDFKNFFE-TLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK--TVFSNPETQ-MGFH 180 (269)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~-~Gl~ 180 (269)
+++....... ........+ ....+...+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|++
T Consensus 91 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~ 169 (550)
T PRK08184 91 FMLGGSSHAW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL 169 (550)
T ss_pred HhHhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence 9875321111 011111111 1223455678899999999999999999999999999999987 899999997 9999
Q ss_pred CCCchHHHHH--hhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccc
Q 024298 181 PDAGASFYLS--HLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSL 241 (269)
Q Consensus 181 p~~g~~~~l~--r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~ 241 (269)
|++|+.+++. +++|.. +++++++|++++++||+++||||++||++++++++.+.+...+..
T Consensus 170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~ 233 (550)
T PRK08184 170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAA 233 (550)
T ss_pred CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhC
Confidence 9999999998 678884 799999999999999999999999999999999877766655443
No 87
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-40 Score=273.29 Aligned_cols=190 Identities=23% Similarity=0.357 Sum_probs=175.3
Q ss_pred cCcEEEEE----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccC
Q 024298 40 QDQVLVEG----RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEG 114 (269)
Q Consensus 40 ~~~v~~~~----~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~ 114 (269)
-.++.+++ +.+|.+|-+|||.+.|+++..|+++|.++|+.+..|+.+|+|+|++.- ..||+|+|+++-..+
T Consensus 26 ~~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~M---- 101 (291)
T KOG1679|consen 26 ANEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTM---- 101 (291)
T ss_pred CceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcC----
Confidence 34466664 557999999999999999999999999999999999999999999986 889999999997764
Q ss_pred ChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhh
Q 024298 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (269)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g 194 (269)
+..+...+++.++.++..|..+|.||||+|+|.++|||++|+++||+|+|+++++|+++|.+++++|++||+++|+|++|
T Consensus 102 s~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg 181 (291)
T KOG1679|consen 102 SPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVG 181 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHh
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHH
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYF 233 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~ 233 (269)
.. ++|+++|++.+++.||...||||++|..++--+++++
T Consensus 182 ~alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~ 221 (291)
T KOG1679|consen 182 VALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQ 221 (291)
T ss_pred HHHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHHH
Confidence 96 8999999999999999999999999998865555554
No 88
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=276.43 Aligned_cols=216 Identities=24% Similarity=0.326 Sum_probs=191.9
Q ss_pred ccCcEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEGRAKSRAAILN-RPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln-~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
.+..+.++++|++.+|.+| ||++.|+++.++..++..+|+.+.+|+++..+|++|.|++||+|.|+..+....+....+
T Consensus 5 ~~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~ 84 (266)
T KOG0016|consen 5 RYREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANE 84 (266)
T ss_pred cccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccc
Confidence 5778999999999999999 999999999999999999999999999999999999999999999999988765443333
Q ss_pred h---HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhh
Q 024298 118 D---FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (269)
Q Consensus 118 ~---~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g 194 (269)
. ..++...+..+...+..+|||+||+|||+|+|.|+.+...||+++|+|+++|-.|++++|..|++|+++.+++++|
T Consensus 85 ~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG 164 (266)
T KOG0016|consen 85 ESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMG 164 (266)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhc
Confidence 2 2333444556888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHhcCCccchHHHHHHhh
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFLSLPDRDFHWLRNELE 268 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~ 268 (269)
.. |.||++.|++++|+||++.|||+++++.+.+.+. +...+++++.+++..++..|+.++
T Consensus 165 ~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~--------------v~~~ikq~s~l~p~sl~~~K~L~r 225 (266)
T KOG0016|consen 165 SASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEE--------------VLKKIKQYSKLSPESLLGMKKLLR 225 (266)
T ss_pred hhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 95 8999999999999999999999999999999999 666666666666666666666553
No 89
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=4.8e-38 Score=260.02 Aligned_cols=215 Identities=18% Similarity=0.235 Sum_probs=180.3
Q ss_pred ccCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--C-CCccccCChhHHHHhhccC
Q 024298 39 LQDQVLVEGR-AKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA--G-RAFCSGGDVIALYQLLNEG 114 (269)
Q Consensus 39 ~~~~v~~~~~-~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~--g-~~F~~G~Dl~~~~~~~~~~ 114 (269)
.|+.|.+++. ++++.|+||||+++|++.+..+.||.++|..+..|++|.+|+|||. | +.||+|.|-+.-.....=.
T Consensus 16 ~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~ 95 (282)
T COG0447 16 GYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYV 95 (282)
T ss_pred CcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCcc
Confidence 5888999998 9999999999999999999999999999999999999999999986 5 7999999986543210000
Q ss_pred ChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhh
Q 024298 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (269)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g 194 (269)
+.+.... -.+.++.+.|+.+||||||.|+|+++|||-.|-+.||+.||++++.|+....++|-+-++-|+-+|.|++|
T Consensus 96 ~d~~~~r--LnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG 173 (282)
T COG0447 96 DDDGIPR--LNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG 173 (282)
T ss_pred CCccCcc--cchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence 1111111 13445777899999999999999999999999999999999999999999999999988888888999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHh-hhhhccccccHHHHHHHHhcC
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFT-SLCVSSLCYSSYAAYNCFLSL 255 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 255 (269)
+. |+|+-+.++.++|+||+++|+||.|||-++|+++..++ .+...+.|.+.+.++..|..-
T Consensus 174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~LK~Afnad 236 (282)
T COG0447 174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRMLKAAFNAD 236 (282)
T ss_pred hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCC
Confidence 95 89999999999999999999999999999999886664 445566666555555555443
No 90
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=3.4e-36 Score=265.55 Aligned_cols=226 Identities=44% Similarity=0.761 Sum_probs=202.9
Q ss_pred CcchhHHHhhhccceEeeceecCccccccCCCCCCCccccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH
Q 024298 1 MQRIKSLLRIKHSFKQVAFVSHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESW 80 (269)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~ 80 (269)
|+|.+.+-+..+.++..+. .+.|.+...+ ...+....+.|.++.++....||||||+.+|++|.+|+..+.-.|..+
T Consensus 1 m~~~~~~~~~~s~~~~~~~--~~~r~f~~~~-~~~~~~~~~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~w 77 (401)
T KOG1684|consen 1 MLRQKLLKARVSNFLALKR--TTSRAFIRMA-SSVSTDSKDQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEW 77 (401)
T ss_pred Ccchhhhhhhhcchhhhhh--hhccceeecc-cccccccCCceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhh
Confidence 6777777777777776554 5566655544 222333567799999999999999999999999999999999999999
Q ss_pred hcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhC
Q 024298 81 EENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQG 159 (269)
Q Consensus 81 ~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~c 159 (269)
+.++.+++||+.|.| ++||+|+|+........++.......++...+.+...|.++.||.||.++|-.+|||+.|+...
T Consensus 78 e~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg 157 (401)
T KOG1684|consen 78 EKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHG 157 (401)
T ss_pred ccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecc
Confidence 999999999999995 9999999999877766667777789999999999999999999999999999999999999999
Q ss_pred CEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCHHHHHhcCccceeccCChHHH
Q 024298 160 MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYT 229 (269)
Q Consensus 160 D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~ 229 (269)
-||||+|++.|.+||..+|++|+.|++++++|++|..+.++.|||.++++.||+..||.++.||.+++..
T Consensus 158 ~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~ 227 (401)
T KOG1684|consen 158 RFRVATERTVFAMPETGIGLFPDVGASYFLSRLPGYLGLYLGLTGQRLSGADALRCGLATHYVPSEKLPS 227 (401)
T ss_pred eeEEeeccceecccccccccccCccceeehhhCccHHHHhhhhccceecchHHHHhcchhhccchhhhhH
Confidence 9999999999999999999999999999999999988999999999999999999999999999999874
No 91
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=2.9e-35 Score=241.51 Aligned_cols=213 Identities=19% Similarity=0.239 Sum_probs=188.4
Q ss_pred ccccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCCh
Q 024298 37 DYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 37 ~~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
........++.+++|..|++|+|++.|.++.+|+.+|.+.+....++.++|+|||+..|+.||+|.|++++.+ ++..
T Consensus 28 ~~p~~~g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~---e~g~ 104 (287)
T KOG1682|consen 28 NGPSDLGLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTN---EPGS 104 (287)
T ss_pred cCcccccccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhc---Cccc
Confidence 3345556677789999999999999999999999999999999888889999999999999999999999876 3445
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~ 196 (269)
+...+.++...+++.-|+++|+|+|+-|||+|..+|+.|...||++||+++++|+.|..++|++....|.. +.|.+.+.
T Consensus 105 d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvA-laRavpRk 183 (287)
T KOG1682|consen 105 DIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVA-LARAVPRK 183 (287)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcchh-Hhhhcchh
Confidence 56677888889999999999999999999999999999999999999999999999999999987666655 67777774
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+.+|++||++|+++||+..|||+++||+++++.++++-+.......+++-++-+.|.
T Consensus 184 va~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~slgk~f~ 241 (287)
T KOG1682|consen 184 VAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVISLGKEFY 241 (287)
T ss_pred HHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 899999999999999999999999999999999888877777666666766666554
No 92
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.85 E-value=7.4e-21 Score=158.44 Aligned_cols=143 Identities=16% Similarity=0.016 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchh
Q 024298 68 SMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGI 147 (269)
Q Consensus 68 ~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~ 147 (269)
-.+.+|.++++.+++|+++++|||++ +|.|.|+... ..+.+++..+..++|||||++||.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~----------------~~~~~~i~~~~~~~kpVia~v~G~ 81 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTAS----------------EVIRAELAAARAAGKPVVASGGGN 81 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHH----------------HHHHHHHHHHHhCCCCEEEEECCc
Confidence 35789999999999999999999997 6888887642 123446667778999999999999
Q ss_pred cchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHH--------HHHhhhh--HH-HHHHhccCCCCCHHHHHhcC
Q 024298 148 TMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASF--------YLSHLPG--YL-GEYLALTGEKLNGVEMIACG 216 (269)
Q Consensus 148 a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~--------~l~r~~g--~~-a~~l~ltG~~i~a~eA~~~G 216 (269)
|.|+|+.|+++||+++++++++|+++.+..+..+...... .+++..| .. .++++..|..++|+||++.|
T Consensus 82 a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~G 161 (177)
T cd07014 82 AASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANG 161 (177)
T ss_pred hhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcC
Confidence 9999999999999999999999999987766433221122 3344445 43 47888999999999999999
Q ss_pred ccceeccCChHHHH
Q 024298 217 LATHYTLNGVRYTA 230 (269)
Q Consensus 217 Lv~~vv~~~~l~~~ 230 (269)
|||++.+.+++.++
T Consensus 162 LVD~v~~~~e~~~~ 175 (177)
T cd07014 162 LVDSLGSFDDAVAK 175 (177)
T ss_pred CcccCCCHHHHHHH
Confidence 99999998887754
No 93
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.83 E-value=5.7e-20 Score=154.39 Aligned_cols=150 Identities=15% Similarity=0.053 Sum_probs=117.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHH
Q 024298 52 RAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVY 131 (269)
Q Consensus 52 ~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 131 (269)
++|.++ ..++......+.+.|+.+++++ ++.|+|.=. |.|.++..- ..++.
T Consensus 2 ~vv~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In----SpGG~v~~~-------------------~~i~~ 52 (187)
T cd07020 2 YVLEIN-----GAITPATADYLERAIDQAEEGG-ADALIIELD----TPGGLLDST-------------------REIVQ 52 (187)
T ss_pred EEEEEe-----eEEChHHHHHHHHHHHHHHhCC-CCEEEEEEE----CCCCCHHHH-------------------HHHHH
Confidence 456665 3467778889999999998665 677777622 555555431 12444
Q ss_pred HHccCCCcEEEEEc---hhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCC--------------chHHHHHhhhh
Q 024298 132 LQGTFVKPHVAILD---GITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDA--------------GASFYLSHLPG 194 (269)
Q Consensus 132 ~i~~~~kp~Iaav~---G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~--------------g~~~~l~r~~g 194 (269)
.+..+|||||++|+ |+|.|+|+.++++||+++++++++|+.+++..+..+.. +....+.+..|
T Consensus 53 ~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G 132 (187)
T cd07020 53 AILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRG 132 (187)
T ss_pred HHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56689999999999 99999999999999999999999999999985554432 23446778888
Q ss_pred H---HHHHHhccCCCCCHHHHHhcCccceeccCC-hHHHH
Q 024298 195 Y---LGEYLALTGEKLNGVEMIACGLATHYTLNG-VRYTA 230 (269)
Q Consensus 195 ~---~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~-~l~~~ 230 (269)
. .+++++++|+.++++||+++||||+++++. ++++.
T Consensus 133 ~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 133 RNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK 172 (187)
T ss_pred CCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence 6 368999999999999999999999999987 56644
No 94
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.70 E-value=1.2e-16 Score=136.81 Aligned_cols=144 Identities=16% Similarity=0.084 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEc
Q 024298 66 NTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILD 145 (269)
Q Consensus 66 ~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~ 145 (269)
+.-.+.+|.++|+.+..|+++++|||+ .||.|.|+..+. .+.+.+..+..++||+||+++
T Consensus 19 ~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~----------------~~~~~l~~~~~~~kpVia~v~ 78 (211)
T cd07019 19 GNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASE----------------VIRAELAAARAAGKPVVVSAG 78 (211)
T ss_pred CccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHH----------------HHHHHHHHHHhCCCCEEEEEC
Confidence 445689999999999999999999998 799999997642 223345677889999999999
Q ss_pred hhcchhhHHHHHhCCEEEEeCCceEecCc------------ccccccC---CCchH--------------HHHHhh----
Q 024298 146 GITMGCGAGISLQGMYRVVTDKTVFSNPE------------TQMGFHP---DAGAS--------------FYLSHL---- 192 (269)
Q Consensus 146 G~a~GgG~~Lal~cD~~ia~~~a~f~~pe------------~~~Gl~p---~~g~~--------------~~l~r~---- 192 (269)
|.|.|+|+.|+++||++++++++.|+... -++|+-+ -.++. ..+...
T Consensus 79 g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~ 158 (211)
T cd07019 79 GAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENG 158 (211)
T ss_pred CeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998886432 1233311 11010 011111
Q ss_pred -------------hhHHHHHHhccCCCCCHHHHHhcCccceeccCChHHH
Q 024298 193 -------------PGYLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYT 229 (269)
Q Consensus 193 -------------~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~ 229 (269)
+.....+-+..|..++++||++.||||++..-++..+
T Consensus 159 ~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~ 208 (211)
T cd07019 159 YKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 208 (211)
T ss_pred HHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence 1111222345689999999999999999987666554
No 95
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.60 E-value=2.4e-14 Score=122.78 Aligned_cols=150 Identities=20% Similarity=0.162 Sum_probs=103.3
Q ss_pred cCCCCCCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHcc
Q 024298 57 NRPSNLNA-LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGT 135 (269)
Q Consensus 57 n~p~~~Na-l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 135 (269)
+++...|+ ++..++.+|.++|+.+++|+++++|||+. +|.|.++... +.+...+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~----------------~~l~~~l~~~~~ 72 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV----------------FELADAIRAARA 72 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH----------------HHHHHHHHHHhc
Confidence 34444454 45689999999999999999999999975 5666665432 123334444445
Q ss_pred CCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCccc------------ccccCCC---------c-----hH---
Q 024298 136 FVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ------------MGFHPDA---------G-----AS--- 186 (269)
Q Consensus 136 ~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~------------~Gl~p~~---------g-----~~--- 186 (269)
+|||||+++|.|.|+|+.|+++||++++++++.|+...+. +|+-+.. + .+
T Consensus 73 -~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~ 151 (214)
T cd07022 73 -GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEA 151 (214)
T ss_pred -CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHH
Confidence 7999999999999999999999999999999988654332 2331110 0 00
Q ss_pred -HHHHhh-----------------hhHHH-HHHhccCCCCCHHHHHhcCccceeccCChHHH
Q 024298 187 -FYLSHL-----------------PGYLG-EYLALTGEKLNGVEMIACGLATHYTLNGVRYT 229 (269)
Q Consensus 187 -~~l~r~-----------------~g~~a-~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~ 229 (269)
..+..+ ..... .+++ |..+++++|++.||||++...+++.+
T Consensus 152 re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~~ 211 (214)
T cd07022 152 RARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDALA 211 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHHH
Confidence 001111 11111 3333 99999999999999999987766654
No 96
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.59 E-value=1.6e-14 Score=118.19 Aligned_cols=134 Identities=16% Similarity=0.104 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEE
Q 024298 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (269)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav 144 (269)
++..+..+|.+.|+.++.|+.+++|+|.. .|.|.|+... ..+...+..++||||+.+
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~-------------------~~i~~~l~~~~kpvva~~ 64 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG-------------------MNIVDALQASRKPVIAYV 64 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH-------------------HHHHHHHHHhCCCEEEEE
Confidence 56688999999999999999999999986 4777766432 223445666789999999
Q ss_pred chhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchH------HHH----Hh---hh------hHH-HHHHhccC
Q 024298 145 DGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGAS------FYL----SH---LP------GYL-GEYLALTG 204 (269)
Q Consensus 145 ~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~------~~l----~r---~~------g~~-a~~l~ltG 204 (269)
+|.|.++|+.|+++||.+++.+++.|++.....+.....+-. ..+ .+ .+ ... ..+++..|
T Consensus 65 ~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~ 144 (161)
T cd00394 65 GGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKD 144 (161)
T ss_pred CChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCC
Confidence 999999999999999999999999999988875553322000 011 11 11 111 35667789
Q ss_pred CCCCHHHHHhcCcccee
Q 024298 205 EKLNGVEMIACGLATHY 221 (269)
Q Consensus 205 ~~i~a~eA~~~GLv~~v 221 (269)
..++++||+++||||+|
T Consensus 145 ~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 145 LVLTAQEALEYGLVDAL 161 (161)
T ss_pred cEEcHHHHHHcCCcCcC
Confidence 99999999999999985
No 97
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.57 E-value=3.1e-14 Score=121.51 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=109.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
|++|.++-+=... ...+..+|.++|+.++.|+++++|+|++ +|.|.|+... ..+.+.+
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~----------------~~i~~~i 59 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVAS----------------EEIYREI 59 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHH----------------HHHHHHH
Confidence 4566665321000 3678999999999999999999999998 4788888642 1233456
Q ss_pred HHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcc------------cccccCCC---------ch----
Q 024298 131 YLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET------------QMGFHPDA---------GA---- 185 (269)
Q Consensus 131 ~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~------------~~Gl~p~~---------g~---- 185 (269)
..+..++|||||+++|.|.|+|+.|+++||++++++++.|+...+ ++|+-+.. +-
T Consensus 60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~ 139 (208)
T cd07023 60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRP 139 (208)
T ss_pred HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCC
Confidence 677788999999999999999999999999999999998864322 23332211 00
Q ss_pred -----HHHHHhhh---------------h--HHHHHHhccCCCCCHHHHHhcCccceeccCChHHH
Q 024298 186 -----SFYLSHLP---------------G--YLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYT 229 (269)
Q Consensus 186 -----~~~l~r~~---------------g--~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~ 229 (269)
...+..++ | .....-++.|..+++++|++.||||++...++..+
T Consensus 140 ~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~~ 205 (208)
T cd07023 140 LTEEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDDAIA 205 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHHHHHH
Confidence 00111111 1 11123356789999999999999999987555543
No 98
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.55 E-value=3.3e-14 Score=138.13 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=114.9
Q ss_pred EeCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHH
Q 024298 47 GRAKSRAAILNRPS--NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFE 124 (269)
Q Consensus 47 ~~~~v~~I~ln~p~--~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 124 (269)
.++.|++|.++.+= ..|..+....+.+.+.|+.+..|++|++|||+-. |.|++.... +
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin----SpGGs~~as----------------e 365 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN----SPGGSVFAS----------------E 365 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec----CCCCCHHHH----------------H
Confidence 46789999998652 1233333345678888999999999999999975 333332210 1
Q ss_pred HHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceE------ecCc------ccccccCCCchHHHHHh-
Q 024298 125 TLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVF------SNPE------TQMGFHPDAGASFYLSH- 191 (269)
Q Consensus 125 ~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f------~~pe------~~~Gl~p~~g~~~~l~r- 191 (269)
.+.+.+..+...+||||+.++|.|.+||+.++++||.++|.+.+.+ +.+. .++|+.|....+..+..
T Consensus 366 ~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~ 445 (584)
T TIGR00705 366 IIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV 445 (584)
T ss_pred HHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence 2223444566778999999999999999999999999999998876 5553 57888876554443322
Q ss_pred ---------------------------hhhH------HHHHHhccCCCCCHHHHHhcCccceeccC
Q 024298 192 ---------------------------LPGY------LGEYLALTGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 192 ---------------------------~~g~------~a~~l~ltG~~i~a~eA~~~GLv~~vv~~ 224 (269)
.++. .+.+.+..|+.++++||+++||||++..-
T Consensus 446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~~ 511 (584)
T TIGR00705 446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGGL 511 (584)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCCH
Confidence 2222 24677889999999999999999999543
No 99
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.52 E-value=8.5e-14 Score=113.99 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchh
Q 024298 68 SMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGI 147 (269)
Q Consensus 68 ~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~ 147 (269)
....++.+.|+.++.++.+ .+.|.+. |+++.. ...+...+..+|||||+.++|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~insp------GG~~~~-------------------~~~i~~~i~~~~~pvi~~v~g~ 68 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSP------GGDVFA-------------------GLAIYNALKRHKGKVTVKIDGL 68 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECC------CCCHHH-------------------HHHHHHHHHhcCCCEEEEEcch
Confidence 5677888888888876443 4455544 444322 1235556677899999999999
Q ss_pred cchhhHHHHHhCCEEEEeCCceEecCcccccccCCCch---------------HHHHHhhhhH--H-HHHHhccCCCCCH
Q 024298 148 TMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGA---------------SFYLSHLPGY--L-GEYLALTGEKLNG 209 (269)
Q Consensus 148 a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~---------------~~~l~r~~g~--~-a~~l~ltG~~i~a 209 (269)
|.|+|+.++++||+|+++++++|.+.....|..+.... ...+.+..|. . ..+++..+..+++
T Consensus 69 a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a 148 (160)
T cd07016 69 AASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTA 148 (160)
T ss_pred HHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcH
Confidence 99999999999999999999999997776555443221 2235666773 3 4777777778999
Q ss_pred HHHHhcCcccee
Q 024298 210 VEMIACGLATHY 221 (269)
Q Consensus 210 ~eA~~~GLv~~v 221 (269)
+||+++||||+|
T Consensus 149 ~eA~~~GliD~v 160 (160)
T cd07016 149 QEAVELGFADEI 160 (160)
T ss_pred HHHHHcCCCCcC
Confidence 999999999986
No 100
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.46 E-value=8.1e-13 Score=112.72 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=104.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
|++|.++.+ ++ ....+|.++|+.+.+|+++++|||+.. |.|.++... ..+.
T Consensus 2 v~vi~i~g~-----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~-------------------~~l~ 52 (207)
T TIGR00706 2 IAILPVSGA-----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS-------------------EEIY 52 (207)
T ss_pred EEEEEEEEE-----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH-------------------HHHH
Confidence 455666532 11 235789999999999999999999974 777776532 1233
Q ss_pred HHHccCC--CcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCccc------------ccccC--------------C
Q 024298 131 YLQGTFV--KPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ------------MGFHP--------------D 182 (269)
Q Consensus 131 ~~i~~~~--kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~------------~Gl~p--------------~ 182 (269)
..|..++ ||+|+.++|.|.|+|+.|+++||.+++++++.++...+. +|+-+ .
T Consensus 53 ~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~ 132 (207)
T TIGR00706 53 EKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPT 132 (207)
T ss_pred HHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCC
Confidence 3444444 999999999999999999999999999999887663332 33321 0
Q ss_pred CchH----HHHH-----------------hhhhHHHHHHhccCCCCCHHHHHhcCccceeccCChHHHHHH
Q 024298 183 AGAS----FYLS-----------------HLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALY 232 (269)
Q Consensus 183 ~g~~----~~l~-----------------r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~ 232 (269)
...+ ..+. |-+.....+-++.|+.+++++|++.||||++...+++.+...
T Consensus 133 ~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~ 203 (207)
T TIGR00706 133 RELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDALKWLA 203 (207)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHHHHHH
Confidence 0000 0111 111111222346789999999999999999998777776533
No 101
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.37 E-value=2.4e-12 Score=110.93 Aligned_cols=145 Identities=13% Similarity=-0.024 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEE
Q 024298 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (269)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav 144 (269)
-+...+.+|.+.|+.+..|+++++|||+..+..| ++.++.++ .+.+..+...+|||||.+
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el-------------------~~~i~~~~~~~kpVia~~ 85 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL-------------------RQALERFRASGKPVIAYA 85 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH-------------------HHHHHHHHHhCCeEEEEe
Confidence 4457788999999999999999999999988777 55555443 234444556799999999
Q ss_pred chhcchhhHHHHHhCCEEEEeCCceEecCccc------------ccccC---------CCchHHH-----------HHhh
Q 024298 145 DGITMGCGAGISLQGMYRVVTDKTVFSNPETQ------------MGFHP---------DAGASFY-----------LSHL 192 (269)
Q Consensus 145 ~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~------------~Gl~p---------~~g~~~~-----------l~r~ 192 (269)
+| |.++|+.|+++||.+++.+.+.|+...+. +|+-+ ..+..+. +..+
T Consensus 86 ~~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~ 164 (222)
T cd07018 86 DG-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQAL 164 (222)
T ss_pred CC-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHH
Confidence 98 88999999999999999999999885432 23221 1111110 0011
Q ss_pred -----------------hhHHHHHHhccCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 193 -----------------PGYLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 193 -----------------~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
+.....+-+..|..+++++|++.||||++...+++.+.
T Consensus 165 l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 165 LDSLWDQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 11111223355999999999999999999987777654
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.36 E-value=1.6e-11 Score=102.14 Aligned_cols=141 Identities=17% Similarity=0.175 Sum_probs=100.5
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHH
Q 024298 52 RAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVY 131 (269)
Q Consensus 52 ~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 131 (269)
.+|.++ ..++......+.++|+++++++ +..|+|.=. |.|+++.. ...+..
T Consensus 2 ~vi~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~-------------------~~~I~~ 52 (178)
T cd07021 2 YVIPIE-----GEIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDS-------------------ALEIVD 52 (178)
T ss_pred EEEEEe-----eEECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHH-------------------HHHHHH
Confidence 455564 3466788888999999998876 666666643 45554432 233556
Q ss_pred HHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCch--------HHH------HHhhhhHH-
Q 024298 132 LQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGA--------SFY------LSHLPGYL- 196 (269)
Q Consensus 132 ~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~--------~~~------l~r~~g~~- 196 (269)
.|..+++|||+.|+|.|.++|+.++++||++++++++.|+.++.- +..|+ ... +.+.-|+.
T Consensus 53 ~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~ 128 (178)
T cd07021 53 LILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDP 128 (178)
T ss_pred HHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCH
Confidence 677899999999999999999999999999999999999998543 33322 111 12223431
Q ss_pred --HHHHhccC-------------CCCCHHHHHhcCccceeccCC
Q 024298 197 --GEYLALTG-------------EKLNGVEMIACGLATHYTLNG 225 (269)
Q Consensus 197 --a~~l~ltG-------------~~i~a~eA~~~GLv~~vv~~~ 225 (269)
+..|+-.. -.++++||++.|++|.+.++.
T Consensus 129 ~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~ 172 (178)
T cd07021 129 DIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSL 172 (178)
T ss_pred HHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCH
Confidence 24454443 279999999999999998753
No 103
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.90 E-value=3.3e-08 Score=81.75 Aligned_cols=138 Identities=13% Similarity=0.165 Sum_probs=99.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.++..+..-|.+.++.++++ .++.|+|.=. |.|+++... ..+...+...++||++.
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~~-------------------~~I~~~i~~~~~pvv~~ 64 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAA-------------------GNIVQRIQQSKIPVIIY 64 (172)
T ss_pred EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCcCEEEE
Confidence 46777888889999998865 4677776643 556555432 12344556789999999
Q ss_pred Ec---hhcchhhHHHHHhCCEEEEeCCceEecCcccccccCC----C-c---hHHH------HHhhhhH---HHHHHhcc
Q 024298 144 LD---GITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPD----A-G---ASFY------LSHLPGY---LGEYLALT 203 (269)
Q Consensus 144 v~---G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~----~-g---~~~~------l~r~~g~---~a~~l~lt 203 (269)
|+ |.|.++|..++++||.+++.+++.++....-.|..+. . . .... +.+.-|+ .+..++-.
T Consensus 65 v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~ 144 (172)
T cd07015 65 VYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITK 144 (172)
T ss_pred EecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHh
Confidence 99 9999999999999999999999999998875432120 0 0 0111 1222343 14677778
Q ss_pred CCCCCHHHHHhcCccceeccCC
Q 024298 204 GEKLNGVEMIACGLATHYTLNG 225 (269)
Q Consensus 204 G~~i~a~eA~~~GLv~~vv~~~ 225 (269)
...++++||+++|++|.|+++.
T Consensus 145 ~~~lta~EA~~~G~iD~ia~~~ 166 (172)
T cd07015 145 DLSLTPEEALKYGVIEVVARDI 166 (172)
T ss_pred hcCcCHHHHHHcCCceeeeCCH
Confidence 8999999999999999999863
No 104
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.88 E-value=1.3e-08 Score=83.55 Aligned_cols=131 Identities=16% Similarity=0.114 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEE
Q 024298 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (269)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav 144 (269)
++..+..++.+.|..++.++..+.|+|.=. |.|+++.. ...++..+...++|+++.+
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~~-------------------~~~i~~~i~~~~~~v~~~~ 65 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVFA-------------------GMAIYDTIKFIKADVVTII 65 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHHH-------------------HHHHHHHHHhcCCCceEEE
Confidence 567889999999999998876666666543 45555432 1224445556788999999
Q ss_pred chhcchhhHHHHHhCC--EEEEeCCceEecCcccccccCCCchHH------------------HHHhhhhHH---HHHHh
Q 024298 145 DGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGASF------------------YLSHLPGYL---GEYLA 201 (269)
Q Consensus 145 ~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~~g~~---a~~l~ 201 (269)
.|.|.++|..++++|| .|++.+++++.+....-|. .|... .+.+..|.. -.+++
T Consensus 66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~---~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~ 142 (162)
T cd07013 66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGT---LGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADL 142 (162)
T ss_pred EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 9999999999999999 5777777777654322111 11111 111223331 14455
Q ss_pred ccCCCCCHHHHHhcCcccee
Q 024298 202 LTGEKLNGVEMIACGLATHY 221 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~v 221 (269)
-.+.-++++||+++||||++
T Consensus 143 ~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 143 ERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred cCCccccHHHHHHcCCCCcC
Confidence 66667799999999999985
No 105
>PRK10949 protease 4; Provisional
Probab=98.85 E-value=9.3e-08 Score=93.59 Aligned_cols=164 Identities=15% Similarity=0.106 Sum_probs=106.0
Q ss_pred eCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHH
Q 024298 48 RAKSRAAILNRP-----SNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 48 ~~~v~~I~ln~p-----~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
++.|++|.++-. ...+.++. +.+.+.|+++..|++|++|||+-.. .|+....
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInS----pGGs~~a---------------- 381 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNS----PGGSVTA---------------- 381 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecC----CCCcHHH----------------
Confidence 567888877631 22234444 4677789999999999999999763 3332211
Q ss_pred HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcc------------cccccCCCchH----
Q 024298 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET------------QMGFHPDAGAS---- 186 (269)
Q Consensus 123 ~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~------------~~Gl~p~~g~~---- 186 (269)
.+.+.+.+..++...||||+.+.|.|..||+.++.+||.++|.+.+..+.-.+ ++|+.+....+
T Consensus 382 se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~ 461 (618)
T PRK10949 382 SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLA 461 (618)
T ss_pred HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccC
Confidence 12233334445567899999999999999999999999999999664444222 24442211100
Q ss_pred -------------HHH------------H-----hhhhHHHHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHh
Q 024298 187 -------------FYL------------S-----HLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFT 234 (269)
Q Consensus 187 -------------~~l------------~-----r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~ 234 (269)
..+ . |-+.....+-+..|+.+++++|++.||||++-.-++..+.+.+.
T Consensus 462 ~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~~ 539 (618)
T PRK10949 462 DVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAEL 539 (618)
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHHH
Confidence 000 0 00111112335689999999999999999998766666554443
No 106
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.80 E-value=5.6e-08 Score=82.48 Aligned_cols=137 Identities=15% Similarity=0.043 Sum_probs=86.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 142 (269)
..++.++...+...|..++.++..+-|.|.=. |.|+|+..- ..++..|...+.|+++
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~In----SpGG~v~~g-------------------~~I~d~i~~~~~~v~t 94 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTAG-------------------LAIYDTMQFIKPDVST 94 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCcHHHH-------------------HHHHHHHHhcCCCEEE
Confidence 34788999999999998886543333333321 344444321 1233345567789999
Q ss_pred EEchhcchhhHHHHHhCC--EEEEeCCceEecCcccccccCCCchH------------------HHHHhhhhHH---HHH
Q 024298 143 ILDGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGAS------------------FYLSHLPGYL---GEY 199 (269)
Q Consensus 143 av~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~------------------~~l~r~~g~~---a~~ 199 (269)
.+.|.|.+.|..++++++ .|++.+++++.+-...-|. .|.. ..+....|.. ..+
T Consensus 95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~ 171 (200)
T PRK00277 95 ICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEK 171 (200)
T ss_pred EEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999988743 4555555555554332111 1111 1123334441 255
Q ss_pred HhccCCCCCHHHHHhcCccceeccCC
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNG 225 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~ 225 (269)
++-.+.-++|+||++.||||+|+++.
T Consensus 172 ~~~~~~~lsa~EA~e~GliD~Ii~~~ 197 (200)
T PRK00277 172 DTDRDNFMSAEEAKEYGLIDEVLTKR 197 (200)
T ss_pred HhhCCccccHHHHHHcCCccEEeecC
Confidence 66677899999999999999999753
No 107
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.67 E-value=2.5e-07 Score=78.91 Aligned_cols=138 Identities=13% Similarity=0.001 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.++.++..++.+.|..++..+..+.|+|.=. |.|+++..- ..++..|..++.|+++.
T Consensus 43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~g-------------------~~I~d~i~~~~~~v~t~ 99 (207)
T PRK12553 43 QVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTAG-------------------DAIYDTIQFIRPDVQTV 99 (207)
T ss_pred eECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHHH-------------------HHHHHHHHhcCCCcEEE
Confidence 4788999999999999986543333333322 455554321 12444566678899999
Q ss_pred EchhcchhhHHHHHhCC--EEEEeCCceEecCcccc-cccCCCchH------------------HHHHhhhhHH---HHH
Q 024298 144 LDGITMGCGAGISLQGM--YRVVTDKTVFSNPETQM-GFHPDAGAS------------------FYLSHLPGYL---GEY 199 (269)
Q Consensus 144 v~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~-Gl~p~~g~~------------------~~l~r~~g~~---a~~ 199 (269)
+.|.|.+.|.-++++|| .|++.++++|.+-.... |. ..|.. ..+.+..|.. ..+
T Consensus 100 ~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~ 177 (207)
T PRK12553 100 CTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRK 177 (207)
T ss_pred EEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999 58999999998876542 21 12211 1122333431 255
Q ss_pred HhccCCCCCHHHHHhcCccceeccCCh
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNGV 226 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~~ 226 (269)
++-.+.-++|+||+++||||+|+++.+
T Consensus 178 ~~~~~~~lta~EA~e~GliD~I~~~~~ 204 (207)
T PRK12553 178 DTDRDKWLTAEEAKDYGLVDQIITSYR 204 (207)
T ss_pred HHhcCccccHHHHHHcCCccEEcCchh
Confidence 666789999999999999999997644
No 108
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.66 E-value=3.8e-09 Score=95.19 Aligned_cols=168 Identities=13% Similarity=-0.034 Sum_probs=134.4
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhhHHHHHHHHHH
Q 024298 50 KSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQ 128 (269)
Q Consensus 50 ~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 128 (269)
++..+.++ |+ .|..|.++..+|..-++.++.+..+++..+|+.. +-|++|.|..+..... .......+-.+.+
T Consensus 66 ~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~----h~fspa~~m~LlE 139 (380)
T KOG1683|consen 66 GFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGM----HFFSPAHWMQLLE 139 (380)
T ss_pred ccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccc----cccCHHHHHHHHH
Confidence 57777787 55 4999999999999999999999888999999988 8999999999887532 3344556667888
Q ss_pred HHHHHccCCCcEEEEEchhcchhh--HHHHHhCCEEEEe--CCceEecCcccccc-cCCCchHHHHHhhhhHH-HHHHhc
Q 024298 129 FVYLQGTFVKPHVAILDGITMGCG--AGISLQGMYRVVT--DKTVFSNPETQMGF-HPDAGASFYLSHLPGYL-GEYLAL 202 (269)
Q Consensus 129 l~~~i~~~~kp~Iaav~G~a~GgG--~~Lal~cD~~ia~--~~a~f~~pe~~~Gl-~p~~g~~~~l~r~~g~~-a~~l~l 202 (269)
++...++++.|+.+++||++--++ +.++.+|+|++.. ..-..+..+...++ .|.+- .-.+...+|.+ +..-+-
T Consensus 140 ii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~-iD~~~t~fGf~~g~~~L~ 218 (380)
T KOG1683|consen 140 IILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWL-IDSLITKFGFRVGERALA 218 (380)
T ss_pred HHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHH-HHHHHHhcCccccHHHHh
Confidence 999999999999999999998888 8899999999998 44455778888773 44432 22334445554 444445
Q ss_pred cCCCCCHHHHHhcCccceeccC
Q 024298 203 TGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 203 tG~~i~a~eA~~~GLv~~vv~~ 224 (269)
-+.-++.+||.+-|+++++.|.
T Consensus 219 d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 219 DGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred hccCccHHHHHhhccchhccch
Confidence 6789999999999999999995
No 109
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.62 E-value=2.6e-06 Score=74.71 Aligned_cols=139 Identities=15% Similarity=0.065 Sum_probs=93.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
..+++++-.....+.++.++... +-+|-|.-.+.++. |.+-+ .....+.+...+..+....+|+|
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~~-lPvV~lvDtpGa~~-g~~aE-------------~~G~~~~ia~~~~~~s~~~VP~I 140 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKFG-RPVVTFINTAGAYP-GVGAE-------------ERGQGEAIARNLMEMSDLKVPII 140 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CHhHH-------------hccHHHHHHHHHHHHhCCCCCEE
Confidence 45678888888888888887643 45555544333332 32211 01234556667778889999999
Q ss_pred EEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH-HHHHHhccCCCCCHHHHHhcCccce
Q 024298 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLATH 220 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~-~a~~l~ltG~~i~a~eA~~~GLv~~ 220 (269)
+.|-|.|.|||......||++++.+++.++.- .|.+.....+...-.. .+.+.+ .+++.++.+.|+||+
T Consensus 141 sVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v~------~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ 210 (256)
T PRK12319 141 AIIIGEGGSGGALALAVADQVWMLENTMYAVL------SPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDK 210 (256)
T ss_pred EEEeCCcCcHHHHHhhcCCEEEEecCceEEEc------CHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcE
Confidence 99999999999888889999999999877652 2333333322221111 123332 779999999999999
Q ss_pred eccCC
Q 024298 221 YTLNG 225 (269)
Q Consensus 221 vv~~~ 225 (269)
|+|+.
T Consensus 211 ii~e~ 215 (256)
T PRK12319 211 VIPEH 215 (256)
T ss_pred ecCCC
Confidence 99864
No 110
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.54 E-value=5.4e-07 Score=74.60 Aligned_cols=132 Identities=16% Similarity=0.057 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEE
Q 024298 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (269)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav 144 (269)
++.+...++...+..+..++..+.|+|.=. |.|+|+..- ..+...+...+.|+++.+
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~~-------------------~~i~~~l~~~~~~v~t~~ 74 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTAG-------------------LAIYDTMQYIKPPVSTIC 74 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEEE
Confidence 677888999999999987755444444432 445554321 123334456689999999
Q ss_pred chhcchhhHHHHHhCC--EEEEeCCceEecCcccccccCCCchHH-----------------HHHhhhhHH---HHHHhc
Q 024298 145 DGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGASF-----------------YLSHLPGYL---GEYLAL 202 (269)
Q Consensus 145 ~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~l~r~~g~~---a~~l~l 202 (269)
.|.|.++|..+++++| .|++.++++|.+-+...+..-. ... .+....|.. -.+++-
T Consensus 75 ~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~ 152 (171)
T cd07017 75 LGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQ--ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD 152 (171)
T ss_pred EeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence 9999999999999999 7999999999988765443211 111 111122331 255556
Q ss_pred cCCCCCHHHHHhcCcccee
Q 024298 203 TGEKLNGVEMIACGLATHY 221 (269)
Q Consensus 203 tG~~i~a~eA~~~GLv~~v 221 (269)
.+.-++++||+++||||+|
T Consensus 153 ~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 153 RDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CCccccHHHHHHcCCCccC
Confidence 7889999999999999986
No 111
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.52 E-value=1.8e-06 Score=72.99 Aligned_cols=137 Identities=15% Similarity=0.083 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.++.++...+...|..++..+..+.|.|.=. |.|+++.. ...++..|...+.||++.
T Consensus 31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~a-------------------g~aI~d~i~~~~~~V~t~ 87 (197)
T PRK14512 31 EINKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDA-------------------GFAIFNMIRFVKPKVFTI 87 (197)
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHhCCCCEEEE
Confidence 3677888999998888776222233333322 45555432 123444566788999999
Q ss_pred EchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccCCCchHH------------------HHHhhhhHH---HHHH
Q 024298 144 LDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASF------------------YLSHLPGYL---GEYL 200 (269)
Q Consensus 144 v~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~~g~~---a~~l 200 (269)
+.|.|.+.|.-++++||. |++.++++|.+-...-|+ .|... .+....|.. ..++
T Consensus 88 v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~---~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~ 164 (197)
T PRK14512 88 GVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGF---KGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKD 164 (197)
T ss_pred EEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCcccc---ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHh
Confidence 999999999999999986 899998888765443222 11111 111223331 2455
Q ss_pred hccCCCCCHHHHHhcCccceeccCCh
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGV 226 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~ 226 (269)
+-....++|+||+++||||+|+++.+
T Consensus 165 ~~~d~~lta~EA~~yGliD~I~~~~~ 190 (197)
T PRK14512 165 TDRDFWLDSSSAVKYGLVFEVVETRL 190 (197)
T ss_pred hhcCcccCHHHHHHcCCccEeecCcH
Confidence 55668899999999999999998643
No 112
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.51 E-value=7.3e-06 Score=73.75 Aligned_cols=140 Identities=13% Similarity=0.026 Sum_probs=93.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
..+++++-.....+.++.++... +-+|-+--.+.+++ |.+-.+ ....+.+...+..+....+|+|
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f~-lPIItlvDTpGA~~-G~~AE~-------------~G~~~aiar~l~~~a~~~VP~I 196 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKFG-LPILTFIDTPGAWA-GVKAEK-------------LGQGEAIAVNLREMFSFEVPII 196 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCc-CHHHHH-------------HhHHHHHHHHHHHHHcCCCCEE
Confidence 45688999999999999887653 44444443333332 321111 1223455566667788999999
Q ss_pred EEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCHHHHHhcCcccee
Q 024298 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~v 221 (269)
++|-|.|.|||......||++++.+++.++. +.|.++++..+. --. ++.+ +-..-.++|+++++.|+||+|
T Consensus 197 sVViGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~-d~~-~a~~-aA~~~~ita~dL~~~giiD~i 267 (322)
T CHL00198 197 CTIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWK-DSK-KSLD-AAEALKITSEDLKVLGIIDEI 267 (322)
T ss_pred EEEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhc-chh-hHHH-HHHHcCCCHHHHHhCCCCeEe
Confidence 9999999888876666799999999988775 234444443332 222 1222 123368999999999999999
Q ss_pred ccCC
Q 024298 222 TLNG 225 (269)
Q Consensus 222 v~~~ 225 (269)
+|..
T Consensus 268 i~Ep 271 (322)
T CHL00198 268 IPEP 271 (322)
T ss_pred ccCC
Confidence 9843
No 113
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.47 E-value=9.2e-07 Score=73.78 Aligned_cols=133 Identities=18% Similarity=0.136 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEE
Q 024298 65 LNTSMVGRLKRLYESWEENPDIG--FVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (269)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~--~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 142 (269)
+|.++...+.+.|..++.++..+ .|.|. |.|+|+.. ...+...|..++.|+++
T Consensus 25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~IN------SpGG~v~~-------------------g~~i~~~i~~~~~~v~t 79 (182)
T PF00574_consen 25 IDEESANRLISQLLYLENEDKNKPINIYIN------SPGGDVDA-------------------GLAIYDAIRSSKAPVTT 79 (182)
T ss_dssp BSHHHHHHHHHHHHHHHHHTSSSEEEEEEE------ECEBCHHH-------------------HHHHHHHHHHSSSEEEE
T ss_pred cCHHHHHHHHHHHHHHhccCCCceEEEEEc------CCCCccHH-------------------HHHHHHHHHhcCCCeEE
Confidence 78899999999888774332222 23344 45666543 22355566778999999
Q ss_pred EEchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccCCCchHH-----------------HHHhhhhHH---HHHH
Q 024298 143 ILDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASF-----------------YLSHLPGYL---GEYL 200 (269)
Q Consensus 143 av~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~l~r~~g~~---a~~l 200 (269)
.+.|.|.+.|.-++++||. |++.+++.|.+-+...+..- .... .+....|.. -.++
T Consensus 80 ~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g--~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~ 157 (182)
T PF00574_consen 80 VVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGG--NASELREQAKELEKLNERIANIYAERTGLSKEEIEEL 157 (182)
T ss_dssp EEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEE--EHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred EEeCccccceehhhhcCCcCceeeeecCEEEeecceeeccc--ccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 9999999999999999999 89999999999888655432 1111 111112321 1445
Q ss_pred hccCCCCCHHHHHhcCccceeccC
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~ 224 (269)
+-...-++++||+++||||+|+.+
T Consensus 158 ~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 158 MDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp CSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HhCCccccHHHHHHcCCCCEeccC
Confidence 555677899999999999999864
No 114
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.47 E-value=3.6e-06 Score=76.24 Aligned_cols=162 Identities=10% Similarity=-0.006 Sum_probs=98.1
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHH
Q 024298 48 RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLY 127 (269)
Q Consensus 48 ~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 127 (269)
++.|++|.++.+=..+ -...+-+++...++.+..+ .+|||+-. |.|+.+.... ...
T Consensus 89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s~----------------~a~ 144 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGYG----------------LAA 144 (330)
T ss_pred CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHHH----------------HHH
Confidence 4678888887542111 1123445666666555433 46777755 3444332210 001
Q ss_pred HHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCccc------------ccccCC---------Cch-
Q 024298 128 QFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ------------MGFHPD---------AGA- 185 (269)
Q Consensus 128 ~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~------------~Gl~p~---------~g~- 185 (269)
..+.++....||+++.+++.|..||+.++.+||.+++.+.+.++...+- +|+-+. .+.
T Consensus 145 ~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~p 224 (330)
T PRK11778 145 SQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTL 224 (330)
T ss_pred HHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCC
Confidence 1133456678999999999999999999999999999998876654442 222100 000
Q ss_pred ----H----HHHHhhh-----------hH-H---HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHH
Q 024298 186 ----S----FYLSHLP-----------GY-L---GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYF 233 (269)
Q Consensus 186 ----~----~~l~r~~-----------g~-~---a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~ 233 (269)
+ ..+...+ -. + ..+-+.+|+.+++++|++.||||++...++....+..
T Consensus 225 f~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~ 295 (330)
T PRK11778 225 FGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMK 295 (330)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHh
Confidence 0 0011111 00 1 1334568999999999999999999988887755443
No 115
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.45 E-value=3.4e-06 Score=71.45 Aligned_cols=138 Identities=14% Similarity=0.048 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.+|.++.+++...|-.++.++..+-|.|.=. |.|+|+.. ...++..+...+.||...
T Consensus 38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~IN----SpGG~v~~-------------------g~aIyd~m~~~~~~V~Tv 94 (200)
T CHL00028 38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFIN----SPGGSVIS-------------------GLAIYDTMQFVKPDVHTI 94 (200)
T ss_pred eecHHHHHHHHHHHHHHhccCCCCCEEEEEe----CCCcchhh-------------------HHHHHHHHHhcCCCEEEE
Confidence 4899999999999999875443343333221 34444432 122445566788999999
Q ss_pred EchhcchhhHHHHHhCC--EEEEeCCceEecCcccccccCCCch-H-----------------HHHHhhhhHH---HHHH
Q 024298 144 LDGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGA-S-----------------FYLSHLPGYL---GEYL 200 (269)
Q Consensus 144 v~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~-~-----------------~~l~r~~g~~---a~~l 200 (269)
+.|.|.+.|.-|++++| .|++.++++|.+-....|.. .|- . ..+....|.. ..++
T Consensus 95 ~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~--~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~ 172 (200)
T CHL00028 95 CLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFY--EGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISED 172 (200)
T ss_pred EEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999 59999999998877654421 221 1 1122223431 2556
Q ss_pred hccCCCCCHHHHHhcCccceeccCCh
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGV 226 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~ 226 (269)
+-...-++|+||+++||||+|+++.+
T Consensus 173 ~~r~~~lta~EA~eyGliD~I~~~~~ 198 (200)
T CHL00028 173 MERDVFMSATEAKAYGIVDLVAVNNE 198 (200)
T ss_pred hhcCccCCHHHHHHcCCCcEEeecCc
Confidence 66678899999999999999997643
No 116
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.36 E-value=1.6e-05 Score=71.58 Aligned_cols=140 Identities=12% Similarity=0.040 Sum_probs=93.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
.-+++++-.....+.++.++.. .+-+|-|--.+.++. |.+-++ ....+.+...+..+....+|+|
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~-------------~G~~~aia~~l~~~a~~~VP~I 193 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLKVPII 193 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh-------------ccHHHHHHHHHHHHhCCCCCEE
Confidence 4567888888888888888754 355555554333332 322211 1234566667778889999999
Q ss_pred EEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCHHHHHhcCcccee
Q 024298 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~v 221 (269)
+.|-|.|.|||..-...||++++.+++.++. .++-|++..+.+-... +.+..- -..++++++.+.|+||+|
T Consensus 194 sVIiGeg~sGGAla~~~aD~v~m~~~A~~sv-------isPEg~a~Il~~~~~~-a~~aae-~~~ita~~l~~~g~iD~I 264 (319)
T PRK05724 194 CTVIGEGGSGGALAIGVGDRVLMLEYSTYSV-------ISPEGCASILWKDASK-APEAAE-AMKITAQDLKELGIIDEI 264 (319)
T ss_pred EEEeCCccHHHHHHHhccCeeeeecCceEee-------cCHHHHHHHHhcCchh-HHHHHH-HcCCCHHHHHHCCCceEe
Confidence 9999999888876666799999999887654 3333333334333222 222211 456899999999999999
Q ss_pred ccCC
Q 024298 222 TLNG 225 (269)
Q Consensus 222 v~~~ 225 (269)
+|..
T Consensus 265 I~Ep 268 (319)
T PRK05724 265 IPEP 268 (319)
T ss_pred ccCC
Confidence 9853
No 117
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.36 E-value=2e-05 Score=72.89 Aligned_cols=138 Identities=12% Similarity=0.042 Sum_probs=91.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 142 (269)
.+++++-..-..+.++.++... +-+|-|.-.+.++ .|.+-++ ....+.+...+..+....+|+|+
T Consensus 200 G~~~peGyRKAlR~mklAekf~-lPIVtLVDTpGA~-pG~~AEe-------------~Gqa~aIAr~l~ams~l~VPiIS 264 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKFG-FPILTFVDTPGAY-AGIKAEE-------------LGQGEAIAFNLREMFGLRVPIIA 264 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcC-CCHHHHH-------------HhHHHHHHHHHHHHhcCCCCEEE
Confidence 4688999999999999887653 4444444332222 2222211 22335566677788899999999
Q ss_pred EEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH-HHHHHhccCCCCCHHHHHhcCcccee
Q 024298 143 ILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLATHY 221 (269)
Q Consensus 143 av~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~-~a~~l~ltG~~i~a~eA~~~GLv~~v 221 (269)
.|-|.+.+||.....+||++++.+++.++. +.|.++++..+....-. .+.+ .-.++++++++.|+||+|
T Consensus 265 VViGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~I 334 (431)
T PLN03230 265 TVIGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEI 334 (431)
T ss_pred EEeCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEe
Confidence 999999666665555789999999987664 23444444433322111 2333 238999999999999999
Q ss_pred ccCC
Q 024298 222 TLNG 225 (269)
Q Consensus 222 v~~~ 225 (269)
+|..
T Consensus 335 I~Ep 338 (431)
T PLN03230 335 VPEP 338 (431)
T ss_pred ccCC
Confidence 9853
No 118
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.36 E-value=2e-05 Score=77.16 Aligned_cols=140 Identities=14% Similarity=0.006 Sum_probs=93.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
.-+++++-..-..+.++.++... +-+|-|--.++++. |..-++ ....+.+...+..+....+|+|
T Consensus 220 fG~~~peGyRKAlRlmkLAekfg-LPIVtLVDTpGA~p-G~~AEe-------------~Gq~~aIArnl~amasl~VP~I 284 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYA-DLKSEE-------------LGQGEAIAHNLRTMFGLKVPIV 284 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CchhHH-------------HhHHHHHHHHHHHHhCCCCCEE
Confidence 45677888888888888887643 44444443322222 222221 1234566667778889999999
Q ss_pred EEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCHHHHHhcCcccee
Q 024298 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~v 221 (269)
++|-|.|.|||......||++++.+++.++. +.|.++++. +.+-... |.+ +-..-.++|++.+++|+||+|
T Consensus 285 SVViGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsI-Lwkd~~~-A~e-AAe~lkiTa~dL~~lGiiD~I 355 (762)
T PLN03229 285 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAI-LWKSAKA-APK-AAEKLRITAQELCRLQIADGI 355 (762)
T ss_pred EEEeCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHH-HhcCccc-HHH-HHHHcCCCHHHHHhCCCCeee
Confidence 9999999988888778899999999887654 233443333 3222221 211 223468999999999999999
Q ss_pred ccCC
Q 024298 222 TLNG 225 (269)
Q Consensus 222 v~~~ 225 (269)
+|..
T Consensus 356 IpEp 359 (762)
T PLN03229 356 IPEP 359 (762)
T ss_pred ccCC
Confidence 9853
No 119
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.36 E-value=2.2e-05 Score=70.65 Aligned_cols=139 Identities=12% Similarity=0.046 Sum_probs=91.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
.-+++++-.....+.++.++.. .+-+|-|--.+.+++ |.+-++ ....+.+...+..+....+|+|
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~-------------~G~~~aia~~l~a~s~~~VP~I 193 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLGVPVI 193 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHH-------------HHHHHHHHHHHHHHHcCCCCEE
Confidence 3567888888888888888764 344554443333222 322211 1233556667777889999999
Q ss_pred EEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhh-HHHHHHhccCCCCCHHHHHhcCccce
Q 024298 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG-YLGEYLALTGEKLNGVEMIACGLATH 220 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g-~~a~~l~ltG~~i~a~eA~~~GLv~~ 220 (269)
+.|-|.|.|||..-...||++++.+++.++. +.|.++.+..+...-- ..+.+. ..++++++.+.|+||+
T Consensus 194 sVViGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~Il~kd~~~a~~aae~----~~~ta~~l~~~G~iD~ 263 (316)
T TIGR00513 194 CTVIGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAILWKDASKAPKAAEA----MKITAPDLKELGLIDS 263 (316)
T ss_pred EEEecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHHhccchhhHHHHHHH----ccCCHHHHHHCCCCeE
Confidence 9999999888776555799999999987764 2334433333322111 122222 5678999999999999
Q ss_pred eccCC
Q 024298 221 YTLNG 225 (269)
Q Consensus 221 vv~~~ 225 (269)
|+|..
T Consensus 264 II~ep 268 (316)
T TIGR00513 264 IIPEP 268 (316)
T ss_pred eccCC
Confidence 99854
No 120
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.34 E-value=9.7e-06 Score=68.32 Aligned_cols=137 Identities=15% Similarity=0.014 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.++.++..++...|..++.++..+-|+|.=. |.|+|+..- ..++..+...+.|+...
T Consensus 34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~~g-------------------~~I~d~l~~~~~~v~t~ 90 (191)
T TIGR00493 34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSITAG-------------------LAIYDTMQFIKPDVSTI 90 (191)
T ss_pred EEChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEE
Confidence 3677888888888888886543344443322 445554321 12333445566677777
Q ss_pred EchhcchhhHHHHHhCC--EEEEeCCceEecCcccccccCCCchH---------------HHHHhhhhH-H--HHHHhcc
Q 024298 144 LDGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGAS---------------FYLSHLPGY-L--GEYLALT 203 (269)
Q Consensus 144 v~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~r~~g~-~--a~~l~lt 203 (269)
+.|.|.+.|.-+++++| .|++.++++|.+-+..-|......-. ..+.+..|. . ..+++-.
T Consensus 91 ~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~ 170 (191)
T TIGR00493 91 CIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTER 170 (191)
T ss_pred EEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhC
Confidence 88999999999988766 59999999999966543321111111 012233444 1 2556677
Q ss_pred CCCCCHHHHHhcCccceecc
Q 024298 204 GEKLNGVEMIACGLATHYTL 223 (269)
Q Consensus 204 G~~i~a~eA~~~GLv~~vv~ 223 (269)
+.-++|+||+++||||+|+.
T Consensus 171 ~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 171 DFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred CccCcHHHHHHcCCccEEec
Confidence 88999999999999999975
No 121
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.33 E-value=7.5e-06 Score=74.32 Aligned_cols=140 Identities=16% Similarity=0.116 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcc
Q 024298 70 VGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITM 149 (269)
Q Consensus 70 ~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~ 149 (269)
.+...+.|+.+..|+.+++|+|.=. |.|+....- +.+.+.++++..-. ||++.|+++|.
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~as----------------~~i~~~l~~l~~~~-PV~v~v~~~AA 140 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRIN----SPGGSVVAS----------------ELIARALKRLRAKK-PVVVSVGGYAA 140 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhHH----------------HHHHHHHHHHhhcC-CEEEEECCeec
Confidence 4555666888889999999999865 445443221 23333444555555 99999999999
Q ss_pred hhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHh--------------------------------------
Q 024298 150 GCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSH-------------------------------------- 191 (269)
Q Consensus 150 GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r-------------------------------------- 191 (269)
.||+.++++||.+||++.+..+=-.+..+. |.. ...+.+
T Consensus 141 SGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~--~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~ 217 (317)
T COG0616 141 SGGYYIALAADKIVADPSSITGSIGVISGA-PNF--EELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDET 217 (317)
T ss_pred chhhhhhccCCEEEecCCceeeeceeEEec-CCH--HHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHH
Confidence 999999999999999998876655444331 111 111110
Q ss_pred ------hhhH------HHHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHH
Q 024298 192 ------LPGY------LGEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYF 233 (269)
Q Consensus 192 ------~~g~------~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~ 233 (269)
.+.. ....-+.+|+-+++++|.+.||||++-..++....+..
T Consensus 218 y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~ 271 (317)
T COG0616 218 YDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAE 271 (317)
T ss_pred HHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHH
Confidence 0111 11335678999999999999999999976665544333
No 122
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=98.30 E-value=0.00013 Score=64.61 Aligned_cols=150 Identities=12% Similarity=0.046 Sum_probs=96.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEEN----PDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d----~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
|.++-.+..-..-+++...-..+..+++.+.+| ...-+|.+.- |.|..+.+-.. ....+.+.+
T Consensus 61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~d-----SgGaRlqEg~~--------~L~~~a~i~ 127 (274)
T TIGR03133 61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLD-----TGGVRLQEANA--------GLIAIAEIM 127 (274)
T ss_pred EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEc-----CCCcChhhhHH--------HHHHHHHHH
Confidence 444444444466788888889999999998762 1233555554 34444432110 111222222
Q ss_pred HHHHHHHccCCCcEEEEEchh--cchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH---HHHHHh
Q 024298 127 YQFVYLQGTFVKPHVAILDGI--TMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY---LGEYLA 201 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~--a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~---~a~~l~ 201 (269)
.. +..+... +|+|+.+.|+ |+||+..++.+||++|+++++++++. +...+....|. ...+-.
T Consensus 128 ~~-~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~a-----------GP~VIe~~~G~e~~~~~d~~ 194 (274)
T TIGR03133 128 RA-ILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRA 194 (274)
T ss_pred HH-HHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEecc-----------CHHHHHHhcCCCccCHHHhc
Confidence 22 2334444 9999999999 89999999999999999999888773 22323333442 124444
Q ss_pred ccCCCCCHHHHHhcCccceeccCCh
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGV 226 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~ 226 (269)
|..+.+.+......|++|.+++++.
T Consensus 195 l~~~~lGG~~~~~sG~~D~~v~dd~ 219 (274)
T TIGR03133 195 LVWRTTGGKHRFLSGDADVLVEDDV 219 (274)
T ss_pred ccccccchHhHhhcccceEEeCCHH
Confidence 4555677777888999999999854
No 123
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.22 E-value=2.3e-05 Score=66.33 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=94.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDIG--FVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPH 140 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~--~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~ 140 (269)
..++.++.+.+...|-.++.++.-+ -|-|. |.|+|+..- ..++..|...+-||
T Consensus 34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~IN------SpGG~v~~G-------------------laIyd~m~~~~~~V 88 (201)
T PRK14513 34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYIN------CPGGEVYAG-------------------LAIYDTMRYIKAPV 88 (201)
T ss_pred CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEE------CCCCchhhH-------------------HHHHHHHHhcCCCE
Confidence 3588889999988888887543212 23344 445544321 23445666788899
Q ss_pred EEEEchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccCCCchH-H-----------------HHHhhhhHH---H
Q 024298 141 VAILDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGAS-F-----------------YLSHLPGYL---G 197 (269)
Q Consensus 141 Iaav~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~-~-----------------~l~r~~g~~---a 197 (269)
...+.|.|.+.|.-|++++|- |++.+++++-+-....|. .|.. . .+.+..|.. -
T Consensus 89 ~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~---~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I 165 (201)
T PRK14513 89 STICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGF---RGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKL 165 (201)
T ss_pred EEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 999999999999999999996 899999999887665443 2211 1 112233432 1
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCCh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGV 226 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~ 226 (269)
.+++-...-++|+||+++||||+|+++.+
T Consensus 166 ~~~~~rd~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 166 LRDMERDYFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred HHHhccCcccCHHHHHHcCCCcEEeccCC
Confidence 55556678899999999999999998654
No 124
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.20 E-value=3.1e-05 Score=66.46 Aligned_cols=136 Identities=11% Similarity=0.061 Sum_probs=90.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcC---CCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCc
Q 024298 63 NALNTSMVGRLKRLYESWEEN---PDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKP 139 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d---~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp 139 (269)
..+|..+.+.+...|..++.. .++. +.|.+ .|+++..- ..++..+...+.|
T Consensus 61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~-lyINS------pGGsv~aG-------------------laIyd~m~~~~~~ 114 (221)
T PRK14514 61 TQIDDYTANTIQAQLLYLDSVDPGKDIS-IYINS------PGGSVYAG-------------------LGIYDTMQFISSD 114 (221)
T ss_pred CEEcHHHHHHHHHHHHHHhccCCCCCEE-EEEEC------CCcchhhH-------------------HHHHHHHHhcCCC
Confidence 347888888998877777643 2332 33444 34443211 1244456678889
Q ss_pred EEEEEchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccCCCchHH---------------HHHhhhhHH---HHH
Q 024298 140 HVAILDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASF---------------YLSHLPGYL---GEY 199 (269)
Q Consensus 140 ~Iaav~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~r~~g~~---a~~ 199 (269)
|.+.+.|.|.+.|..|++++|. |++.+++++.+-...-|......-.. .+.+..|.. ..+
T Consensus 115 V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~ 194 (221)
T PRK14514 115 VATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWA 194 (221)
T ss_pred EEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999999996 88999998888665433321111000 111233441 255
Q ss_pred HhccCCCCCHHHHHhcCccceeccC
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~ 224 (269)
++-...-++|+||+++||||+|+..
T Consensus 195 ~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 195 DSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HhhcCccCCHHHHHHcCCccEEeec
Confidence 5666788999999999999999864
No 125
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.18 E-value=3.6e-05 Score=65.06 Aligned_cols=139 Identities=13% Similarity=-0.003 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.+|.+..+++...|..++.++..+-|.+.=. |.|+++..- ..++..+...+.||...
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN----SpGG~v~~g-------------------~aIyd~m~~~~~~V~t~ 89 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYIN----SPGGSVYDG-------------------LGIFDTMQHVKPDVHTV 89 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEe----CCCcchhhH-------------------HHHHHHHHhcCCCEEEE
Confidence 4889999999999999885432233333322 445554321 12444556778889999
Q ss_pred EchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccCCCchHH---------------HHHhhhhHH---HHHHhcc
Q 024298 144 LDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASF---------------YLSHLPGYL---GEYLALT 203 (269)
Q Consensus 144 v~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~r~~g~~---a~~l~lt 203 (269)
+.|.|.+.|..|++++|. |++.+++++.+-...-|..-...-.. .+.+..|.. -.+++-.
T Consensus 90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~r 169 (196)
T PRK12551 90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDR 169 (196)
T ss_pred EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 999999999999999985 78888888888665433210000000 112223431 2555566
Q ss_pred CCCCCHHHHHhcCccceeccCC
Q 024298 204 GEKLNGVEMIACGLATHYTLNG 225 (269)
Q Consensus 204 G~~i~a~eA~~~GLv~~vv~~~ 225 (269)
..-++|+||+++||||+|++..
T Consensus 170 d~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 170 DFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CcCCCHHHHHHcCCCcEEeccC
Confidence 6789999999999999999864
No 126
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.17 E-value=4.9e-05 Score=66.55 Aligned_cols=97 Identities=19% Similarity=0.161 Sum_probs=76.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
.+.++.+..+++.++++....+..+- ++|. +.|+++.. ...+.+.+.+++.+++
T Consensus 69 ~~~I~i~dse~v~raI~~~~~~~~Id-Lii~------TpGG~v~A-------------------A~~I~~~l~~~~~~v~ 122 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREAPKDKPID-LIIH------TPGGLVDA-------------------AEQIARALREHPAKVT 122 (285)
T ss_pred ceeEcHhhHHHHHHHHHhcCCCCceE-EEEE------CCCCcHHH-------------------HHHHHHHHHhCCCCEE
Confidence 36689999999999999887765553 3343 34554432 2234456667899999
Q ss_pred EEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCc
Q 024298 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAG 184 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g 184 (269)
+.|+..|..+|.-++++||-+++.+.+.+|-.+.++|-.|...
T Consensus 123 v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~s 165 (285)
T PF01972_consen 123 VIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAAS 165 (285)
T ss_pred EEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHH
Confidence 9999999999999999999999999999999999999888643
No 127
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=98.14 E-value=0.00028 Score=63.20 Aligned_cols=156 Identities=11% Similarity=0.051 Sum_probs=99.5
Q ss_pred EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHH
Q 024298 47 GRAKSRAAILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFET 125 (269)
Q Consensus 47 ~~~~v~~I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~ 125 (269)
.+|.-..|.-|++. ..-+++....+.+.++++.+... .+-+|.+...| |+...+ + ....... ..
T Consensus 118 I~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-----GarmqE-------g-i~sL~~~-ak 182 (292)
T PRK05654 118 IEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-----GARMQE-------G-LLSLMQM-AK 182 (292)
T ss_pred ECCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Ccchhh-------h-hhHHHhH-HH
Confidence 34544445555554 67889999999999999998765 46677776543 332222 0 0011111 22
Q ss_pred HHHHHHHHccCCCcEEEEEchhcchhhHH-HHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccC
Q 024298 126 LYQFVYLQGTFVKPHVAILDGITMGCGAG-ISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTG 204 (269)
Q Consensus 126 ~~~l~~~i~~~~kp~Iaav~G~a~GgG~~-Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG 204 (269)
....+.++.....|.|+++.|+|.||+.. +++.+|++|+.+++.+++...+ .+...++. ++ .-
T Consensus 183 ~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e---~l--pe 246 (292)
T PRK05654 183 TSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVRE---KL--PE 246 (292)
T ss_pred HHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhh---hh--hh
Confidence 22344456677899999999999999764 6778999999999888774331 11111111 11 11
Q ss_pred CCCCHHHHHhcCccceeccCChHHHHHHH
Q 024298 205 EKLNGVEMIACGLATHYTLNGVRYTALYF 233 (269)
Q Consensus 205 ~~i~a~eA~~~GLv~~vv~~~~l~~~~~~ 233 (269)
+.-+++-+.+.|+||.|+++.++-+....
T Consensus 247 ~~~~ae~~~~~G~vD~Vv~~~e~r~~l~~ 275 (292)
T PRK05654 247 GFQRAEFLLEHGAIDMIVHRRELRDTLAS 275 (292)
T ss_pred hhcCHHHHHhCCCCcEEECHHHHHHHHHH
Confidence 12256667789999999999999877333
No 128
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=98.04 E-value=0.00017 Score=64.52 Aligned_cols=150 Identities=13% Similarity=0.067 Sum_probs=92.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENP----DIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~----~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
|..+-.+..-..-+++......+..+++.+.++. -+-+|.+.- |.|..+.+-. .....+.+.+
T Consensus 70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~d-----SGGaRlqEg~--------~~L~~~a~i~ 136 (301)
T PRK07189 70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFE-----TGGVRLQEAN--------AGLAAIAEIM 136 (301)
T ss_pred EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEec-----CCCcCccchH--------HHHHHHHHHH
Confidence 4445555555678899999999999999987664 145566554 3444443211 0111222222
Q ss_pred HHHHHHHccCCCcEEEEEchh--cchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH-H--HHHHh
Q 024298 127 YQFVYLQGTFVKPHVAILDGI--TMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-L--GEYLA 201 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~--a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~-~--a~~l~ 201 (269)
..+ ..+... +|+|+.+.|+ |+||+...+.+||++|+++++++++. |...+....|. . +.+-.
T Consensus 137 ~~~-~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla-----------GP~VIe~~~G~e~~d~~d~~ 203 (301)
T PRK07189 137 RAI-VDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRA 203 (301)
T ss_pred HHH-HHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc-----------CHHHHHHhcCCcccCHHHhc
Confidence 222 234444 9999999999 99999999999999999999887773 22222232331 1 22322
Q ss_pred ccCCCCCHHHHHhcCccceeccCCh
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGV 226 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~ 226 (269)
+-.+.+.+......|.+|.+++++.
T Consensus 204 ~vw~~lGG~h~~~sG~~D~~v~dd~ 228 (301)
T PRK07189 204 LVWRTTGGKHRYLSGLADALVDDDV 228 (301)
T ss_pred ccccccCcceeeecccceEEeCCHH
Confidence 2222233334556899999998765
No 129
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.01 E-value=0.00054 Score=61.13 Aligned_cols=152 Identities=9% Similarity=0.062 Sum_probs=97.0
Q ss_pred eCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAK-SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~-v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+|. |.++..|..-..-+++....+.+.++++.+... .+-+|.+...| |+-+.+ +. ...... ...
T Consensus 118 ~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSg-----GaRmqE-------g~-~sL~~~-ak~ 182 (285)
T TIGR00515 118 YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASG-----GARMQE-------AL-LSLMQM-AKT 182 (285)
T ss_pred CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Cccccc-------ch-hHHHhH-HHH
Confidence 444 343444433467889999999999999988754 46677776543 332211 11 111122 122
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHH-HHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCC
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAG-ISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGE 205 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~-Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~ 205 (269)
...+.++.....|.|+++.|+|.||+.. +++.+|++|+.+++.+++.... .+...+|. ++ .-+
T Consensus 183 ~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e---~l--pe~ 246 (285)
T TIGR00515 183 SAALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVRE---KL--PEG 246 (285)
T ss_pred HHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcC---cc--chh
Confidence 2234456677899999999999999754 6679999999999888874332 11222221 11 111
Q ss_pred CCCHHHHHhcCccceeccCChHHHH
Q 024298 206 KLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 206 ~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
--+++-+.+.|+||.|+++.++-+.
T Consensus 247 ~q~ae~~~~~G~vD~iv~~~~~r~~ 271 (285)
T TIGR00515 247 FQTSEFLLEHGAIDMIVHRPEMKKT 271 (285)
T ss_pred cCCHHHHHhCCCCcEEECcHHHHHH
Confidence 2255667789999999999999876
No 130
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.95 E-value=0.00069 Score=60.45 Aligned_cols=150 Identities=8% Similarity=0.031 Sum_probs=93.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
|.+.-.+-.-..-+++...-+.+.++++.+.... +-+|.+.. |.|+.+.+-.. ....+.+....+.
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~-----SGGARmQEg~~--------sL~qmak~saa~~ 200 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCA-----SGGARMQEGSL--------SLMQMAKISSALY 200 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEEC-----CCCccccccch--------hhhhhHHHHHHHH
Confidence 4444555444678899999999999999987654 56677665 34444422110 0111111111111
Q ss_pred HHHccCCCcEEEEEchhcchhhHHH-HHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCH
Q 024298 131 YLQGTFVKPHVAILDGITMGCGAGI-SLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNG 209 (269)
Q Consensus 131 ~~i~~~~kp~Iaav~G~a~GgG~~L-al~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a 209 (269)
+....-..|.|+++.|+|.||+... ++.||++|+.+++.+++...+ .+...+|. - +.-+-=++
T Consensus 201 ~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr-----------VIe~t~ge----~-lpe~fq~a 264 (296)
T CHL00174 201 DYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR-----------VIEQTLNK----T-VPEGSQAA 264 (296)
T ss_pred HHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH-----------HHHHhcCC----c-CCcccccH
Confidence 1122457999999999999999765 667999999888877765221 11111111 0 11112246
Q ss_pred HHHHhcCccceeccCChHHHH
Q 024298 210 VEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 210 ~eA~~~GLv~~vv~~~~l~~~ 230 (269)
+-.++.|+||.||+..++-+.
T Consensus 265 e~l~~~G~vD~iV~r~~lr~~ 285 (296)
T CHL00174 265 EYLFDKGLFDLIVPRNLLKGV 285 (296)
T ss_pred HHHHhCcCceEEEcHHHHHHH
Confidence 668899999999999988876
No 131
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.95 E-value=9.2e-06 Score=66.03 Aligned_cols=100 Identities=16% Similarity=0.054 Sum_probs=64.0
Q ss_pred ccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCccc------------ccc---------cCCCc-----hH-
Q 024298 134 GTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ------------MGF---------HPDAG-----AS- 186 (269)
Q Consensus 134 ~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~------------~Gl---------~p~~g-----~~- 186 (269)
....|||||.++|.|..+|+.|+.+||-+++.+.+.++...+. +|+ ....+ .+
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s~ 82 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMSE 82 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--H
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCCH
Confidence 4678999999999999999999999999999998877765442 332 11111 00
Q ss_pred ---HHHHhh-----------h----h--HHHHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHH
Q 024298 187 ---FYLSHL-----------P----G--YLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYF 233 (269)
Q Consensus 187 ---~~l~r~-----------~----g--~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~ 233 (269)
..+.+. + | ....+-+..|..+++++|++.||||++-..+++.+.+.+
T Consensus 83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~ 149 (154)
T PF01343_consen 83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAK 149 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHH
Confidence 011110 1 1 111233578999999999999999999988887766433
No 132
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.88 E-value=0.00014 Score=71.23 Aligned_cols=86 Identities=9% Similarity=-0.115 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchh
Q 024298 68 SMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGI 147 (269)
Q Consensus 68 ~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~ 147 (269)
-.+.++.++++.+.+|+.|++|||.-.+ +.|.++..+ +.+.+.+..+....|||||..+++
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~----------------~ei~~ai~~fk~sgKpVvA~~~~~ 136 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHL----------------VEIGSALSEFKDSGKPVYAYGTNY 136 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHH----------------HHHHHHHHHHHhcCCeEEEEEccc
Confidence 3567999999999999999999999753 123333221 233344445566799999988877
Q ss_pred cchhhHHHHHhCCEEEEeCCceEecC
Q 024298 148 TMGCGAGISLQGMYRVVTDKTVFSNP 173 (269)
Q Consensus 148 a~GgG~~Lal~cD~~ia~~~a~f~~p 173 (269)
+ -+|+.|+.+||.+++.+.+.+++.
T Consensus 137 ~-s~~YylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 137 S-QGQYYLASFADEIILNPMGSVDLH 161 (584)
T ss_pred c-chhhhhhhhCCEEEECCCceEEee
Confidence 5 678999999999999998777553
No 133
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.86 E-value=0.00089 Score=58.23 Aligned_cols=156 Identities=10% Similarity=-0.051 Sum_probs=91.9
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAKSRAAILNRPSNLNALNTSMVGRLKRLYESW-EENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~-~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+|.-..|.=|+|.. .++.+-...+...+... +.+..+-+|.|--. +.|-.|..- +.....+.+
T Consensus 30 ~G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDt-pG~~~g~~a-------------E~~G~~~a~ 93 (238)
T TIGR03134 30 AGGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDT-PSQAYGRRE-------------ELLGINQAL 93 (238)
T ss_pred CCEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeC-CCCCCCHHH-------------HHHHHHHHH
Confidence 34444455555542 68877777777878775 44455555555432 223333222 222233344
Q ss_pred HHHHHH---HccCCCcEEEEEchhcchhhHH-HHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhc
Q 024298 127 YQFVYL---QGTFVKPHVAILDGITMGCGAG-ISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLAL 202 (269)
Q Consensus 127 ~~l~~~---i~~~~kp~Iaav~G~a~GgG~~-Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~l 202 (269)
.+++.. ....+.|+|+.|-|.++|||+. +.+.+|.++|.+++.+ +..+.-+++..+.+-... +.++.-
T Consensus 94 A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i-------~vm~~e~aa~I~~~~~~~-~~e~a~ 165 (238)
T TIGR03134 94 AHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMV-------HVMDLESMARVTKRSVEE-LEALAK 165 (238)
T ss_pred HHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEE-------EecCHHHHHHHHccCHhH-HHHHHH
Confidence 444444 4466699999999999998874 5445788877766544 555544444434333322 222221
Q ss_pred c--CCCCCHHHHHhcCccceeccCChH
Q 024298 203 T--GEKLNGVEMIACGLATHYTLNGVR 227 (269)
Q Consensus 203 t--G~~i~a~eA~~~GLv~~vv~~~~l 227 (269)
. -...+.+.+.+.|+||+|+++.+-
T Consensus 166 ~~~~~a~~~~~~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 166 SSPVFAPGIENFVKLGGVHALLDVADA 192 (238)
T ss_pred hhhhhccCHHHHHhCCCccEEeCCCCc
Confidence 1 134677789999999999997664
No 134
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.73 E-value=0.00036 Score=58.75 Aligned_cols=97 Identities=12% Similarity=0.008 Sum_probs=64.7
Q ss_pred HHHHHccCCCcEEEEEchhcchhhHHHHHhCCEE--EEeCCceEecCcccccccCCCchHHH------------------
Q 024298 129 FVYLQGTFVKPHVAILDGITMGCGAGISLQGMYR--VVTDKTVFSNPETQMGFHPDAGASFY------------------ 188 (269)
Q Consensus 129 l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~--ia~~~a~f~~pe~~~Gl~p~~g~~~~------------------ 188 (269)
++..+...+.||...+-|.|...|..|++++|.. ++.+++++-+-... |.+- |.+.-
T Consensus 77 Iydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~--G~a~Di~i~A~ei~~~~~~l~~i 153 (200)
T COG0740 77 IYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQ--GQASDIEIHAREILKIKERLNRI 153 (200)
T ss_pred HHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCc--cCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445678999999999999999999999999874 77777766654443 2211 11110
Q ss_pred HHhhhhHH-H--HHHhccCCCCCHHHHHhcCccceeccCChHH
Q 024298 189 LSHLPGYL-G--EYLALTGEKLNGVEMIACGLATHYTLNGVRY 228 (269)
Q Consensus 189 l~r~~g~~-a--~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~ 228 (269)
+....|.. . ....-...-++|+||+++||||+|....+..
T Consensus 154 ~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~~ 196 (200)
T COG0740 154 YAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREAA 196 (200)
T ss_pred HHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccccc
Confidence 11112221 1 2233345678999999999999999876544
No 135
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.70 E-value=0.0021 Score=61.92 Aligned_cols=138 Identities=12% Similarity=0.096 Sum_probs=92.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccC--ChhHHHHhhccCChhhHHHHHHHHHHH
Q 024298 52 RAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGG--DVIALYQLLNEGKFEDFKNFFETLYQF 129 (269)
Q Consensus 52 ~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~--Dl~~~~~~~~~~~~~~~~~~~~~~~~l 129 (269)
.++-.+.--...+++......+..+++.+..+. +-+|.|.- |.|. ++.+-.. ....+.+.+. -
T Consensus 60 ~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~d-----sgGa~~r~~eg~~--------~l~~~g~i~~-~ 124 (493)
T PF01039_consen 60 VVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVD-----SGGAFLRMQEGVE--------SLMGMGRIFR-A 124 (493)
T ss_dssp EEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEE-----ESSBCGGGGGHHH--------HHHHHHHHHH-H
T ss_pred EEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEecc-----ccccccccchhhh--------hhhhhHHHHH-H
Confidence 333333333667899999999999999988764 45555554 5555 3333221 1122223333 3
Q ss_pred HHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC-ceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCC
Q 024298 130 VYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLN 208 (269)
Q Consensus 130 ~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~ 208 (269)
+.++.. ..|+|+++.|+|.|||..++..||++|+.++ +.+++... ..+. ..+|+.++
T Consensus 125 ~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP-----------~vv~----------~~~Ge~~~ 182 (493)
T PF01039_consen 125 IARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGP-----------RVVE----------SATGEEVD 182 (493)
T ss_dssp HHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTH-----------HHHH----------HHHSSCTS
T ss_pred HHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEeccc-----------cccc----------cccCcccc
Confidence 344556 9999999999999999999999999999997 87776421 1111 13568888
Q ss_pred HHHH-------HhcCccceeccCCh
Q 024298 209 GVEM-------IACGLATHYTLNGV 226 (269)
Q Consensus 209 a~eA-------~~~GLv~~vv~~~~ 226 (269)
.++. ...|.+|.++++++
T Consensus 183 ~~~lgG~~~h~~~sG~~d~v~~de~ 207 (493)
T PF01039_consen 183 SEELGGADVHAAKSGVVDYVVDDEE 207 (493)
T ss_dssp HHHHHBHHHHHHTSSSSSEEESSHH
T ss_pred chhhhhhhhhcccCCCceEEEechH
Confidence 7764 47899999998765
No 136
>PRK10949 protease 4; Provisional
Probab=97.60 E-value=0.00051 Score=67.64 Aligned_cols=86 Identities=10% Similarity=-0.027 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchh
Q 024298 68 SMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGI 147 (269)
Q Consensus 68 ~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~ 147 (269)
-.+.++.++++.+.+|+.|++|||.-.+.. |..... .+.+.+.+..+....||+||.-+.+
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~g---G~~~a~----------------~~eI~~ai~~fk~sGKpVvA~~~~~ 155 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFA---GADQPS----------------MQYIGKALREFRDSGKPVYAVGDSY 155 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCCC---CccHHH----------------HHHHHHHHHHHHHhCCeEEEEecCc
Confidence 445689999999999999999999976321 222211 1233344455566789999864444
Q ss_pred cchhhHHHHHhCCEEEEeCCceEecC
Q 024298 148 TMGCGAGISLQGMYRVVTDKTVFSNP 173 (269)
Q Consensus 148 a~GgG~~Lal~cD~~ia~~~a~f~~p 173 (269)
.-+++.|+.+||.+++.+.+.+++.
T Consensus 156 -~s~~YyLASaAD~I~l~P~G~v~~~ 180 (618)
T PRK10949 156 -SQGQYYLASFANKIYLSPQGVVDLH 180 (618)
T ss_pred -cchhhhhhhhCCEEEECCCceEEEe
Confidence 4678999999999999998777654
No 137
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0018 Score=60.31 Aligned_cols=148 Identities=15% Similarity=0.126 Sum_probs=107.1
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHH
Q 024298 48 RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLY 127 (269)
Q Consensus 48 ~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 127 (269)
++.|..|.++ +.+++...+.+.+.++.++++.. .+|||.=.- - -...+...
T Consensus 25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldT----P-------------------GGl~~sm~ 75 (436)
T COG1030 25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELDT----P-------------------GGLLDSMR 75 (436)
T ss_pred CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecC----C-------------------CchHHHHH
Confidence 5568888885 56999999999999999987653 344443210 0 11234566
Q ss_pred HHHHHHccCCCcEEEEEc---hhcchhhHHHHHhCCEEEEeCCceEecCcccccc---cCCCc-hHHH------HHhhhh
Q 024298 128 QFVYLQGTFVKPHVAILD---GITMGCGAGISLQGMYRVVTDKTVFSNPETQMGF---HPDAG-ASFY------LSHLPG 194 (269)
Q Consensus 128 ~l~~~i~~~~kp~Iaav~---G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl---~p~~g-~~~~------l~r~~g 194 (269)
++.+.+.+.|.|++..|. ++|..+|..++++||+..+++.+.++-...-.+- .+... .... +.+.-|
T Consensus 76 ~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~g 155 (436)
T COG1030 76 QIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERG 155 (436)
T ss_pred HHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcC
Confidence 688899999999999885 4699999999999999999999988875543222 11111 1111 223334
Q ss_pred HH---HHHHhccCCCCCHHHHHhcCccceeccC
Q 024298 195 YL---GEYLALTGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 195 ~~---a~~l~ltG~~i~a~eA~~~GLv~~vv~~ 224 (269)
+. |.+++.....++++||.+.|++|-+..+
T Consensus 156 RN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 156 RNPTWAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred CChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence 42 5888899999999999999999999765
No 138
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.51 E-value=0.0025 Score=54.75 Aligned_cols=144 Identities=14% Similarity=0.054 Sum_probs=92.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCc--eEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDI--GFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPH 140 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v--~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~ 140 (269)
-..+.++.+.+...|-.++.++.. =-+-|.|.|....+|-=+... .....++..+...+-+|
T Consensus 47 ~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v----------------~~glaIyD~m~~ik~~V 110 (222)
T PRK12552 47 RQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFE----------------TEAFAICDTMRYIKPPV 110 (222)
T ss_pred cchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccccccccc----------------ccHHHHHHHHHhcCCCe
Confidence 345566888888888888654321 235556666554444111111 11122444556677789
Q ss_pred EEEEchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccCCCchHHHH------------------HhhhhHH---H
Q 024298 141 VAILDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASFYL------------------SHLPGYL---G 197 (269)
Q Consensus 141 Iaav~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~r~~g~~---a 197 (269)
...+-|.|.+.+.-|++++|- |++.+++++-+-....|. .|.+.-+ ....|.. -
T Consensus 111 ~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~---~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I 187 (222)
T PRK12552 111 HTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGA---RGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKL 187 (222)
T ss_pred EEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCccc---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999996 889999999887665443 1222111 1122321 1
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCC
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNG 225 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~ 225 (269)
.+.+-.-.-++|+||+++||||+|+.+.
T Consensus 188 ~~d~~rd~wmsA~EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 188 SKDTDRMFYLTPQEAKEYGLIDRVLESR 215 (222)
T ss_pred HHHhcCCCcCCHHHHHHcCCCcEEeccC
Confidence 3344445679999999999999999764
No 139
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.49 E-value=0.0059 Score=58.99 Aligned_cols=158 Identities=13% Similarity=0.060 Sum_probs=98.0
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHH
Q 024298 54 AILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYL 132 (269)
Q Consensus 54 I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (269)
|.=|+|. ...+++.+..+...+.++.+.+. .+-+|.|.-.+. |..|.+-+ .....+...+++..
T Consensus 319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E-------------~~g~~~~~a~~~~a 383 (512)
T TIGR01117 319 IIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQE-------------YGGIIRHGAKVLYA 383 (512)
T ss_pred EEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHH-------------HHHHHHHHHHHHHH
Confidence 3444543 34569999999999999988754 455555554333 44443221 12334455567777
Q ss_pred HccCCCcEEEEEchhcchhhHHHHH----hCCEEEEeCCceEecCcccccccCCCchHHHHHh-hhh----HH-H-HH-H
Q 024298 133 QGTFVKPHVAILDGITMGCGAGISL----QGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSH-LPG----YL-G-EY-L 200 (269)
Q Consensus 133 i~~~~kp~Iaav~G~a~GgG~~Lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r-~~g----~~-a-~~-l 200 (269)
+....+|.|+.|-|.+.|||+.-+. .+|++++.++++++. .++-++...+.+ -+. .. + .+ +
T Consensus 384 ~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~~~~ 456 (512)
T TIGR01117 384 YSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRKQKI 456 (512)
T ss_pred HHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHHHHH
Confidence 8889999999999999888654433 289999988877665 322222222211 110 00 1 11 1
Q ss_pred -hccCCCCCHHHHHhcCccceeccCChHHHHHHH
Q 024298 201 -ALTGEKLNGVEMIACGLATHYTLNGVRYTALYF 233 (269)
Q Consensus 201 -~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~ 233 (269)
-+.-+..++..+.+.|+||.|+++.+.-+..-+
T Consensus 457 ~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~ 490 (512)
T TIGR01117 457 AEYREEFANPYKAAARGYVDDVIEPKQTRPKIVN 490 (512)
T ss_pred HHHHHhhcCHHHHHhcCCCCeeEChHHHHHHHHH
Confidence 112234578899999999999999998765333
No 140
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=97.15 E-value=0.018 Score=50.58 Aligned_cols=198 Identities=12% Similarity=0.060 Sum_probs=122.6
Q ss_pred cchhHHHhhhccceE-eeceecCccccccC---CCC----CCCccccCcEEEEE---eC-CEEEEEEcCCCCCCCCCHHH
Q 024298 2 QRIKSLLRIKHSFKQ-VAFVSHQQRSFSAL---PDY----SSNDYLQDQVLVEG---RA-KSRAAILNRPSNLNALNTSM 69 (269)
Q Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~----~~~~~~~~~v~~~~---~~-~v~~I~ln~p~~~Nal~~~~ 69 (269)
+|++.|++--.+-.. ..+.+--|..|... .+. .......+.|..-. ++ .+....++-.--.-++..-.
T Consensus 63 ~Ri~~llD~gsf~el~~~l~~~dPL~F~d~k~Y~~rL~~a~~~tg~~davvtg~g~i~G~pvv~av~df~FmgGSmGsVv 142 (294)
T COG0777 63 ERLEALLDEGSFEELDSPLEPKDPLKFPDSKKYKDRLEAARKKTGLDDAVVTGEGTINGLPVVLAVMDFAFMGGSMGSVV 142 (294)
T ss_pred HHHHHhhCCCcceecccCCCcCCcccCCcchhhHHHHHHHHhhcCCCcceEEEeeEECCeEEEEEEEeccccccchhHHH
Confidence 466666665544443 33455455444321 111 11111344444332 22 25556666666678899888
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcc
Q 024298 70 VGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITM 149 (269)
Q Consensus 70 ~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~ 149 (269)
=+.+..+++.+-++. +.+|+++.. .|+-..|-.- .-.........+.++..-..|.|+.+..+..
T Consensus 143 Geki~ra~E~A~e~k-~P~v~f~aS-----GGARMQEg~l---------SLMQMaktsaAl~~l~ea~lpyIsVLt~PTt 207 (294)
T COG0777 143 GEKITRAIERAIEDK-LPLVLFSAS-----GGARMQEGIL---------SLMQMAKTSAALKRLSEAGLPYISVLTDPTT 207 (294)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEecC-----cchhHhHHHH---------HHHHHHHHHHHHHHHHhcCCceEEEecCCCc
Confidence 999999999987654 688888874 4444433110 1112234455667788899999999999998
Q ss_pred hhh-HHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCHHHHHhcCccceeccCChHH
Q 024298 150 GCG-AGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGVRY 228 (269)
Q Consensus 150 GgG-~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~ 228 (269)
||= .++++..|+.||.++|.++|...+ .+-+...+-+-.| --+++-.++.|+||.||+..++-
T Consensus 208 GGVsASfA~lGDi~iAEP~AlIGFAGpR---------------VIEQTire~LPeg-fQ~aEfLlehG~iD~iv~R~elr 271 (294)
T COG0777 208 GGVSASFAMLGDIIIAEPGALIGFAGPR---------------VIEQTIREKLPEG-FQTAEFLLEHGMIDMIVHRDELR 271 (294)
T ss_pred cchhHhHHhccCeeecCcccccccCcch---------------hhhhhhcccCCcc-hhhHHHHHHcCCceeeecHHHHH
Confidence 775 479999999999999888876433 1111111111111 22466678999999999998888
Q ss_pred HH
Q 024298 229 TA 230 (269)
Q Consensus 229 ~~ 230 (269)
+.
T Consensus 272 ~t 273 (294)
T COG0777 272 TT 273 (294)
T ss_pred HH
Confidence 76
No 141
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.13 E-value=0.0018 Score=57.11 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=67.9
Q ss_pred HHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhcc
Q 024298 124 ETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALT 203 (269)
Q Consensus 124 ~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~lt 203 (269)
+.+..-+..+.++++|+||.|=|---+||.-=...+|.+.+-++++++. +.|.++++.++..--. +.+. -.
T Consensus 175 eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~~k--a~eA-Ae 245 (317)
T COG0825 175 EAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDASK--AKEA-AE 245 (317)
T ss_pred HHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcChhh--hHHH-HH
Confidence 3444455567889999999999997777776666779999999999885 5677766654443322 2222 23
Q ss_pred CCCCCHHHHHhcCccceeccC
Q 024298 204 GEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 204 G~~i~a~eA~~~GLv~~vv~~ 224 (269)
-..|+|++.+++|+||.|+|.
T Consensus 246 ~mkita~dLk~lgiID~II~E 266 (317)
T COG0825 246 AMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred HcCCCHHHHHhCCCcceeccC
Confidence 368999999999999999986
No 142
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.13 E-value=0.01 Score=57.30 Aligned_cols=140 Identities=11% Similarity=0.130 Sum_probs=84.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
|..+-.+..-+.-+++....+.+..+++.+.++. +-+|.+.- |.|..+.+-.. ....+.+.+....
T Consensus 84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~d-----SgGarm~eg~~--------~l~~~~~~~~~~~ 149 (512)
T TIGR01117 84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLND-----SGGARIQEAVD--------ALKGYGDIFYRNT 149 (512)
T ss_pred EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEec-----CCCCCccccch--------hhhhHHHHHHHHH
Confidence 3333433333678899999999999999987765 45555554 33443322100 0011112222221
Q ss_pred HHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC-ceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCH
Q 024298 131 YLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNG 209 (269)
Q Consensus 131 ~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a 209 (269)
. ..-..|.|+++.|+|.||+......||++|+.++ +++.+. |...+.. .+|+.+++
T Consensus 150 -~-~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~a-----------GP~vv~~----------~~Ge~v~~ 206 (512)
T TIGR01117 150 -I-ASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFIT-----------GPQVIKT----------VTGEEVTA 206 (512)
T ss_pred -H-HcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEec-----------ChHHHHh----------hcCcccch
Confidence 1 2335899999999999999888889999999996 345542 1111122 24555555
Q ss_pred HHH-----H--hcCccceeccCChH
Q 024298 210 VEM-----I--ACGLATHYTLNGVR 227 (269)
Q Consensus 210 ~eA-----~--~~GLv~~vv~~~~l 227 (269)
+|. + .-|.+|.++++++-
T Consensus 207 e~lGGa~~h~~~sGv~d~~~~de~e 231 (512)
T TIGR01117 207 EQLGGAMAHNSVSGVAHFIAEDDDD 231 (512)
T ss_pred hhcchHHHhccccceeEEecCChHH
Confidence 554 2 57999999876543
No 143
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.02 E-value=0.029 Score=54.88 Aligned_cols=147 Identities=15% Similarity=0.191 Sum_probs=87.4
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAKSRAAILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~v~~I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+|.-..|.-|++. +..+++....+.+.++++.+.+.. +-+|.|.-. .|..+.+ + .........+.+.+
T Consensus 127 ~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DS-----gGarl~~--q---~e~~~~~~~~g~if 195 (569)
T PLN02820 127 HGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDS-----GGANLPR--Q---AEVFPDRDHFGRIF 195 (569)
T ss_pred CCEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC-----CCcCCcc--c---ccccchHhHHHHHH
Confidence 3333333444443 678899999999999999987654 556666543 3333311 0 00000001111112
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeC-CceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCC
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTD-KTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGE 205 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~ 205 (269)
. -..++....+|.|+++.|+|.|||......||++|+++ ++++.+. |...+.. .+|+
T Consensus 196 ~-~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a-----------GP~vV~~----------~~Ge 253 (569)
T PLN02820 196 Y-NQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA-----------GPPLVKA----------ATGE 253 (569)
T ss_pred H-HHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEec-----------CHHHHHh----------hcCc
Confidence 2 22235567799999999999999999999999999987 4555542 1111111 2455
Q ss_pred CCCHHHH-----H--hcCccceeccCChH
Q 024298 206 KLNGVEM-----I--ACGLATHYTLNGVR 227 (269)
Q Consensus 206 ~i~a~eA-----~--~~GLv~~vv~~~~l 227 (269)
.++++|. + .-|.+|.+++++.-
T Consensus 254 ~v~~eeLGGa~~h~~~sGv~d~~~~de~~ 282 (569)
T PLN02820 254 EVSAEDLGGADVHCKVSGVSDHFAQDELH 282 (569)
T ss_pred ccCHHHhCCHHHhcccccccccccCchHH
Confidence 5666554 2 36888888776543
No 144
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=95.77 E-value=0.1 Score=50.42 Aligned_cols=159 Identities=12% Similarity=0.044 Sum_probs=94.7
Q ss_pred EEEcCCCCCC-CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHH
Q 024298 54 AILNRPSNLN-ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYL 132 (269)
Q Consensus 54 I~ln~p~~~N-al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (269)
|.-|+|.... +++.+-.....+.++..+. ..+-+|.|.-. ..|..|. ..+.....+...+++.+
T Consensus 298 iian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~-------------~~E~~g~~~~ga~~~~a 362 (493)
T PF01039_consen 298 IIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGP-------------EAERAGIIRAGARLLYA 362 (493)
T ss_dssp EEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SH-------------HHHHTTHHHHHHHHHHH
T ss_pred EEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccc-------------hhhhcchHHHHHHHHHH
Confidence 4555664222 6999999999999988876 44666666643 2343332 12224456677778889
Q ss_pred HccCCCcEEEEEchhcchhhHHHHHhC----CEEEEeCCceEecCcccccccCCCchHHHHHhhhh---------HHH--
Q 024298 133 QGTFVKPHVAILDGITMGCGAGISLQG----MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG---------YLG-- 197 (269)
Q Consensus 133 i~~~~kp~Iaav~G~a~GgG~~Lal~c----D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g---------~~a-- 197 (269)
+..+..|+|..|-|.+.|+|..-+... |+++|.++++++. .++-++...+.+.-- ..+
T Consensus 363 ~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~v-------m~~e~a~~i~~~~~~~~~~~~~~~~~~~~ 435 (493)
T PF01039_consen 363 LAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGV-------MGPEGAASILYRDELEAAEAEGADPEAQR 435 (493)
T ss_dssp HHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEES-------S-HHHHHHHHTHHHHHHSCHCCHSHHHHH
T ss_pred HHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeee-------cChhhhheeeehhhhhhhhcccchhHHHH
Confidence 999999999999999999887554444 7887777766654 333333332222110 000
Q ss_pred HHHh--ccCCCCCHHHHHhcCccceeccCChHHHHHHHh
Q 024298 198 EYLA--LTGEKLNGVEMIACGLATHYTLNGVRYTALYFT 234 (269)
Q Consensus 198 ~~l~--ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~ 234 (269)
.+.+ ..-+.-++..+...|++|.|+++.+.-...-.+
T Consensus 436 ~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~ 474 (493)
T PF01039_consen 436 AEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAA 474 (493)
T ss_dssp HHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHH
Confidence 1111 111235788999999999999999987764433
No 145
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=95.29 E-value=0.059 Score=51.78 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=66.2
Q ss_pred EEEEEcC-CCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 52 RAAILNR-PSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 52 ~~I~ln~-p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
..+..|. +-+.-++..-..+.+..+.+.+.++..-.+.+.. |.|+.+.+=. .....+-+-++ -.
T Consensus 93 ~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~d------sgGari~~~v--------~~l~g~g~iF~-~~ 157 (526)
T COG4799 93 VFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLND------SGGARIQEGV--------PSLAGYGRIFY-RN 157 (526)
T ss_pred EEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEc------ccccccccCc--------cccccchHHHH-HH
Confidence 3344444 3367778887888888888888776543444444 3444443211 11111112222 22
Q ss_pred HHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC-ceEe
Q 024298 131 YLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFS 171 (269)
Q Consensus 131 ~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~-a~f~ 171 (269)
.++... +|.|++|.|.|.|||..+...||++|+.++ +++.
T Consensus 158 a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mf 198 (526)
T COG4799 158 ARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMF 198 (526)
T ss_pred HHhccC-CCEEEEEEecCcccccccccccceEEEEcCCccEE
Confidence 234555 999999999999999999999999999997 4443
No 146
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.17 Score=44.15 Aligned_cols=133 Identities=12% Similarity=0.039 Sum_probs=77.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 142 (269)
-.+|.++-+.+...|-.++.+++-|=|.+.=. |.|.++.. ...++..+..+.-||-.
T Consensus 99 ~~Idd~va~~viaqlL~Ld~ed~~K~I~lyIN----SPGG~vta-------------------glAIYDtMq~ik~~V~T 155 (275)
T KOG0840|consen 99 QPIDDDVANLVIAQLLYLDSEDPKKPIYLYIN----SPGGSVTA-------------------GLAIYDTMQYIKPDVST 155 (275)
T ss_pred CcCcHHHHHHHHHHHHHhhccCCCCCeEEEEe----CCCCccch-------------------hhhHHHHHHhhCCCcee
Confidence 34888888888888888887666666665543 44444421 11133344456666666
Q ss_pred EEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHH--------HHHhhh--------------hHHH---
Q 024298 143 ILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASF--------YLSHLP--------------GYLG--- 197 (269)
Q Consensus 143 av~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~--------~l~r~~--------------g~~a--- 197 (269)
.+=|.|.+-|.-|..+ .+.+-++++|..++=+.-+.|+.. ...+++ |+..
T Consensus 156 ic~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i 230 (275)
T KOG0840|consen 156 ICVGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVI 230 (275)
T ss_pred eehhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 6668877766554443 245667777777766643333221 011111 1100
Q ss_pred HHHhccCCCCCHHHHHhcCccceecc
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTL 223 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~ 223 (269)
.+-+-.-+.++|+||++.||||.|++
T Consensus 231 ~~d~dRd~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 231 EKDMDRDRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred HhhhcccccCCHHHHHHhcchhhhhc
Confidence 11112235689999999999999987
No 147
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=94.94 E-value=1.4 Score=43.25 Aligned_cols=146 Identities=13% Similarity=0.039 Sum_probs=93.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 142 (269)
-.++.+-.....+.++.++. -.+-+|-|.-. ..|..|.+-+. ....+...+++..+....+|.|+
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~-pGf~~G~~~E~-------------~G~~~~~a~l~~A~a~~~VP~is 444 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNI-TGFMVGSRSEA-------------SGIAKAGAKMVMAVACAKVPKIT 444 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEEC-CCCCCCHHHHH-------------hhHHHHHHHHHHHHHhCCCCEEE
Confidence 45778888888888887765 34555555543 22545443322 34566777888889999999999
Q ss_pred EEchhcchhhHHHHH----hCCEEEEeCCceEecCcccccccCCCchHHHHHhh-h------------hHH-H-HHH--h
Q 024298 143 ILDGITMGCGAGISL----QGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHL-P------------GYL-G-EYL--A 201 (269)
Q Consensus 143 av~G~a~GgG~~Lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~------------g~~-a-~~l--~ 201 (269)
.|-|.|+|+|..-+. ..|++++.+++ .+|+.++-++...+.+. + -.. + ++. -
T Consensus 445 vi~g~a~G~g~~aM~g~~~~~d~~~awp~A-------~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (569)
T PLN02820 445 IIVGGSFGAGNYGMCGRAYSPNFLFMWPNA-------RIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVE 517 (569)
T ss_pred EEECCcchHHHHHhcCcCCCCCEEEECCCC-------eEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHH
Confidence 999999998875443 45666666554 55565555555444331 1 001 1 110 1
Q ss_pred ccCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
..-+..++..+-+.|+||.|+++.+.-..
T Consensus 518 ~~~~~~~p~~aa~~~~vD~VIdP~dTR~~ 546 (569)
T PLN02820 518 AYEREANPYYSTARLWDDGVIDPADTRRV 546 (569)
T ss_pred HHHHhCCHHHHHHcCCcCcccCHHHHHHH
Confidence 11234577788899999999999887655
No 148
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=85.77 E-value=13 Score=35.22 Aligned_cols=150 Identities=13% Similarity=0.079 Sum_probs=95.8
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHH
Q 024298 54 AILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYL 132 (269)
Q Consensus 54 I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (269)
|.-|+|+ ..-.|..+.-..-.+.++...+ ..+-.|.+..-+. |-.|.+.+. ..+.+.-..++..
T Consensus 353 Ivgnn~kf~~G~L~s~sa~KgarfIe~c~q-~~IPLi~l~ni~G-fm~g~~~e~-------------~gIaK~gAklv~a 417 (536)
T KOG0540|consen 353 IVGNNPKFAGGVLFSESAVKGARFIELCDQ-RNIPLIFLQNITG-FMVGRAAEA-------------GGIAKHGAKLVYA 417 (536)
T ss_pred EeccCchhcccccchhhhhhhHHHHHHHHh-cCCcEEEEEccCC-ccccchhhh-------------hchhhhhhhhhhh
Confidence 4555654 3345666666666666665544 3466666665544 777776643 3344555667788
Q ss_pred HccCCCcEEEEEchhcchhhHH---HHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhh-----hhH--HHHHHhc
Q 024298 133 QGTFVKPHVAILDGITMGCGAG---ISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHL-----PGY--LGEYLAL 202 (269)
Q Consensus 133 i~~~~kp~Iaav~G~a~GgG~~---Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-----~g~--~a~~l~l 202 (269)
...-..|-|..+.|.+.||-.. -.+.-|+.++.+.+++++-..+ ++.-.+.+. ... ...|.+
T Consensus 418 ~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~-------~a~~Vi~q~~~e~a~~~~~~~~E~f- 489 (536)
T KOG0540|consen 418 VACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGGK-------QAANVIFQITLEKAVALKAPYIEKF- 489 (536)
T ss_pred hhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeecccc-------chhhhhhhhhhhhhhhhcchHHHHh-
Confidence 8889999999999999996654 5677789999988888765332 111122222 222 223333
Q ss_pred cCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 203 TGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 203 tG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
|.|+. |...||+|.|+++.+.-..
T Consensus 490 -~npy~---a~~Rg~~D~II~p~~tR~v 513 (536)
T KOG0540|consen 490 -GNPYY---AAARGWDDGIIDPSDTRKV 513 (536)
T ss_pred -cCccH---HHHhhccccccChhHhhHH
Confidence 77766 4578999999999887654
No 149
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=80.42 E-value=5.8 Score=35.34 Aligned_cols=53 Identities=25% Similarity=0.400 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcc
Q 024298 73 LKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITM 149 (269)
Q Consensus 73 L~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~ 149 (269)
+.++|+.+++||+.++||+-|+ -|.+-++ ...+ ++.. ....||+|+.+-|.+.
T Consensus 188 fid~L~~fe~Dp~T~~ivmiGE-----iGG~aEe-----------~AA~-------~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 188 FIDALEMFEADPETEAIVMIGE-----IGGPAEE-----------EAAE-------YIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHHHHHHhcCccccEEEEEec-----CCCcHHH-----------HHHH-------HHHH-hccCCCEEEEEeccCC
Confidence 4578889999999999999986 2222221 1122 2223 3345999999999876
No 150
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=76.08 E-value=6.6 Score=35.46 Aligned_cols=81 Identities=11% Similarity=0.135 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHHhcCC---CceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEE
Q 024298 66 NTSMVGRLKRLYESWEENP---DIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (269)
Q Consensus 66 ~~~~~~eL~~~l~~~~~d~---~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 142 (269)
+.+...++.++++.+.... .+.+|||.= .|+.++++... .-..+.++|..+|.|||+
T Consensus 53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~R------GGGs~eDL~~F--------------N~e~varai~~~~~Pvis 112 (319)
T PF02601_consen 53 GEGAAASIVSALRKANEMGQADDFDVIIIIR------GGGSIEDLWAF--------------NDEEVARAIAASPIPVIS 112 (319)
T ss_pred ccchHHHHHHHHHHHHhccccccccEEEEec------CCCChHHhccc--------------ChHHHHHHHHhCCCCEEE
Confidence 3456678888888887554 455555442 23334443321 113477789999999999
Q ss_pred EEchhcchhhHHHHHhCCEEEEeCCc
Q 024298 143 ILDGITMGCGAGISLQGMYRVVTDKT 168 (269)
Q Consensus 143 av~G~a~GgG~~Lal~cD~~ia~~~a 168 (269)
+| ||-.-- .-.=+.+|+|..|+++
T Consensus 113 aI-GHe~D~-ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 113 AI-GHETDF-TIADFVADLRAPTPTA 136 (319)
T ss_pred ec-CCCCCc-hHHHHHHHhhCCCHHH
Confidence 98 554433 3355677888887753
No 151
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=75.80 E-value=48 Score=32.31 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=93.7
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHH
Q 024298 54 AILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYL 132 (269)
Q Consensus 54 I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (269)
|.=|.|. ..-.|+.+-...-.+.++.... .++-.|.|. .=..|..|-|-+. ....+.-..++.+
T Consensus 328 iIANqp~~~~G~l~~~sa~KaArFI~~cd~-~~iPlv~L~-d~pGFm~G~~~E~-------------~giik~Gakl~~A 392 (526)
T COG4799 328 IIANQPRHLGGVLDIDSADKAARFIRLCDA-FNIPLVFLV-DTPGFMPGTDQEY-------------GGIIKHGAKLLYA 392 (526)
T ss_pred EEecCccccccccchHHHHHHHHHHHhhhc-cCCCeEEEe-CCCCCCCChhHHh-------------ChHHHhhhHHHhh
Confidence 5556665 3456887777777777754433 345444443 2366888876543 4456677778889
Q ss_pred HccCCCcEEEEEchhcchhhHHH----HHhCCEEEEeCCceEecCcccccccCCCchHHHHHh-hhhH-HH--H-H----
Q 024298 133 QGTFVKPHVAILDGITMGCGAGI----SLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSH-LPGY-LG--E-Y---- 199 (269)
Q Consensus 133 i~~~~kp~Iaav~G~a~GgG~~L----al~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r-~~g~-~a--~-~---- 199 (269)
+....+|.|..+-|.+.|||..- ++.+|+.+|.++ .++|+.-+-|+.-.+.+ .+.. .. . +
T Consensus 393 ~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~-------a~iaVMG~egAv~i~~~k~l~~~~~~~~~~~~~~ 465 (526)
T COG4799 393 VAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPT-------AEIAVMGPEGAVSILYRKELAAAERPEEREALLR 465 (526)
T ss_pred HhhccCCeEEEEecccccceeeeecCccCCCceeEecCc-------ceeeecCHHHHHHHHHHHHhhcccCchhHHHHHH
Confidence 99999999999999999998643 233555555555 44455432333333332 1111 00 0 0
Q ss_pred --H--hccCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 200 --L--ALTGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 200 --l--~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
+ -+.-+-.++--|.+.|++|.|+++.+.-..
T Consensus 466 ~~~~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR~~ 500 (526)
T COG4799 466 KQLIAEYEEQFSNPYYAAERGYIDAVIDPADTRAV 500 (526)
T ss_pred HHHHHHHHHhccchHHHHHhCCCCcccCHHHHHHH
Confidence 0 011222456667789999999999887655
No 152
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=74.57 E-value=7.1 Score=37.08 Aligned_cols=88 Identities=11% Similarity=0.093 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEE
Q 024298 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (269)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav 144 (269)
=+.+...++..+++.++..+++.+|||.=. |+.++++... .-..+.+++..||.|||++|
T Consensus 167 QG~~a~~~i~~al~~~~~~~~~dviii~RG------GGs~eDL~~F--------------n~e~~~rai~~~~~Pvis~i 226 (432)
T TIGR00237 167 QGEGAVQSIVESIELANTKNECDVLIVGRG------GGSLEDLWSF--------------NDEKVARAIFLSKIPIISAV 226 (432)
T ss_pred cCccHHHHHHHHHHHhhcCCCCCEEEEecC------CCCHHHhhhc--------------CcHHHHHHHHcCCCCEEEec
Confidence 344567788888888876555666555422 3334443322 11247778999999999998
Q ss_pred chhcchhhHHHHHhCCEEEEeCC--ceEecCc
Q 024298 145 DGITMGCGAGISLQGMYRVVTDK--TVFSNPE 174 (269)
Q Consensus 145 ~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe 174 (269)
||-.-- .-.=+.+|.|..|++ |.+..|.
T Consensus 227 -GHe~D~-ti~D~vAd~ra~TPtaaae~~~p~ 256 (432)
T TIGR00237 227 -GHETDF-TISDFVADLRAPTPSAAAEIVSPN 256 (432)
T ss_pred -CcCCCc-cHHHHhhhccCCCcHHHHHHhCcc
Confidence 443322 224567788888874 3444443
No 153
>smart00250 PLEC Plectin repeat.
Probab=69.51 E-value=3.8 Score=24.75 Aligned_cols=19 Identities=37% Similarity=0.396 Sum_probs=17.4
Q ss_pred ccCCCCCHHHHHhcCccce
Q 024298 202 LTGEKLNGVEMIACGLATH 220 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~ 220 (269)
.+|++++-.||.+.||+|.
T Consensus 17 ~t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 17 ETGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCCcCHHHHHHcCCCCc
Confidence 3899999999999999986
No 154
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=67.47 E-value=16 Score=33.22 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcc
Q 024298 72 RLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITM 149 (269)
Q Consensus 72 eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~ 149 (269)
.+.+.|+.+++||+.++|++.+++. .+- .++..++.+. ....||+|+.+-|...
T Consensus 211 ~~~D~L~~~~~Dp~T~~Ivl~~E~g-----G~~-----------e~~aa~fi~~--------~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 211 NFIDCLKLFLNDPETEGIILIGEIG-----GTA-----------EEEAAEWIKN--------NPIKKPVVSFIAGITA 264 (317)
T ss_pred CHHHHHHHHhhCCCccEEEEEEecC-----Cch-----------hHHHHHHHHh--------hcCCCcEEEEEecCCC
Confidence 3567788888888889998888621 111 1122233322 2468999999999864
No 155
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=66.76 E-value=12 Score=35.44 Aligned_cols=79 Identities=11% Similarity=0.146 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEch
Q 024298 67 TSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDG 146 (269)
Q Consensus 67 ~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G 146 (269)
.+-..++.++++.+++..++.++|+-= .|+.++++... .+ ..+.+++..+++|+|++| |
T Consensus 175 ~~A~~eIv~aI~~an~~~~~DvlIVaR------GGGSiEDLW~F------------Nd--E~vaRAi~~s~iPvISAV-G 233 (440)
T COG1570 175 EGAAEEIVEAIERANQRGDVDVLIVAR------GGGSIEDLWAF------------ND--EIVARAIAASRIPVISAV-G 233 (440)
T ss_pred CCcHHHHHHHHHHhhccCCCCEEEEec------CcchHHHHhcc------------Ch--HHHHHHHHhCCCCeEeec-c
Confidence 345567777777777776666665542 24445555432 11 237778999999999999 4
Q ss_pred hcchhhHHHHHhCCEEEEeCC
Q 024298 147 ITMGCGAGISLQGMYRVVTDK 167 (269)
Q Consensus 147 ~a~GgG~~Lal~cD~~ia~~~ 167 (269)
|-.-. .-.=..+|+|-.|++
T Consensus 234 HEtD~-tL~DfVAD~RApTPT 253 (440)
T COG1570 234 HETDF-TLADFVADLRAPTPT 253 (440)
T ss_pred cCCCc-cHHHhhhhccCCCch
Confidence 43221 112345677777764
No 156
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=66.54 E-value=22 Score=28.17 Aligned_cols=51 Identities=24% Similarity=0.282 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhc
Q 024298 72 RLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGIT 148 (269)
Q Consensus 72 eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a 148 (269)
.+.+.++.+.+||+.++|++.-++ + | . +.+....++.... ||||+..-|..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~~------d---------------~----~~f~~~~~~a~~~-KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGIG------D---------------G----RRFLEAARRAARR-KPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--S----------------------H----HHHHHHHHHHCCC-S-EEEEE----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCCC------C---------------H----HHHHHHHHHHhcC-CCEEEEeCCCc
Confidence 467778888899999999988753 1 0 0 2344455566666 99999999973
No 157
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=63.04 E-value=2.5 Score=26.62 Aligned_cols=20 Identities=40% Similarity=0.395 Sum_probs=16.9
Q ss_pred ccCCCCCHHHHHhcCcccee
Q 024298 202 LTGEKLNGVEMIACGLATHY 221 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~v 221 (269)
-+|++++-+||.+.||||.-
T Consensus 17 ~tg~~lsv~~A~~~glId~~ 36 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDSD 36 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-HH
T ss_pred CCCeEEcHHHHHHCCCcCHH
Confidence 47899999999999999863
No 158
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=61.52 E-value=17 Score=29.35 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.+|.+.. .++|..+.+||++++|++-+.+.+=+. . +....+...+..... ...++|+|+.
T Consensus 55 mid~~~~---~~~l~~~~~Dp~v~vIlvd~~~G~g~~----~-----------~~A~~l~~a~~~~~~--~~~~~pvVa~ 114 (153)
T PF00549_consen 55 MIDPSTR---NEALEIEAADPEVKVILVDIVGGIGSC----E-----------DPAAGLIPAIKEAKA--EGRKKPVVAR 114 (153)
T ss_dssp TT-SSHH---HHHHHHHHTSTTESEEEEEEESSSSSH----H-----------HHHHHHHHHHSHCTH--TTT-SEEEEE
T ss_pred CcCHHHH---HHHHHHHhcCCCccEEEEEeccccCch----H-----------HHHHHHHHHHHhccc--cCCCCcEEEE
Confidence 3555444 455777888999999999875432111 1 111222222221111 4578999999
Q ss_pred Echhcch
Q 024298 144 LDGITMG 150 (269)
Q Consensus 144 v~G~a~G 150 (269)
|.|...-
T Consensus 115 v~GT~~d 121 (153)
T PF00549_consen 115 VCGTNAD 121 (153)
T ss_dssp EESTTCH
T ss_pred eeeecCC
Confidence 9998776
No 159
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=57.04 E-value=22 Score=33.68 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHHhcCCCceE-EEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEE
Q 024298 66 NTSMVGRLKRLYESWEENPDIGF-VLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (269)
Q Consensus 66 ~~~~~~eL~~~l~~~~~d~~v~~-vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav 144 (269)
+.....++.++++.+.... +.+ ||.+| |+.++++... .-..+.+++..+|.|||++|
T Consensus 174 G~~A~~~i~~al~~~~~~~-~Dviii~RG-------GGS~eDL~~F--------------n~e~v~~ai~~~~~Pvis~I 231 (438)
T PRK00286 174 GEGAAASIVAAIERANARG-EDVLIVARG-------GGSLEDLWAF--------------NDEAVARAIAASRIPVISAV 231 (438)
T ss_pred CccHHHHHHHHHHHhcCCC-CCEEEEecC-------CCCHHHhhcc--------------CcHHHHHHHHcCCCCEEEec
Confidence 3455677888888876532 334 44444 2334443321 11247778999999999998
Q ss_pred chhcchhhHHHHHhCCEEEEeCC
Q 024298 145 DGITMGCGAGISLQGMYRVVTDK 167 (269)
Q Consensus 145 ~G~a~GgG~~Lal~cD~~ia~~~ 167 (269)
||-.-- .-.=+.+|.|..|++
T Consensus 232 -GHE~D~-tl~D~vAd~ra~TPt 252 (438)
T PRK00286 232 -GHETDF-TIADFVADLRAPTPT 252 (438)
T ss_pred -cCCCCc-cHHHHhhhccCCChH
Confidence 443322 225567788888775
No 160
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=53.43 E-value=1.5e+02 Score=25.74 Aligned_cols=143 Identities=10% Similarity=-0.043 Sum_probs=82.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCc
Q 024298 62 LNALNTSMVGRLKRLYESWEENPDIGFVLM--KGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKP 139 (269)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl--tg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp 139 (269)
...++.+.-..|..++.+.-.+..-+.||+ -..|..++- -+|+ --+...+....+.+..-+...-|
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~gr---reEl---------lGi~~alAhla~a~a~AR~~GHp 107 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGR---REEL---------LGINQALAHLAKAYALARLAGHP 107 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccch---HHHH---------hhHHHHHHHHHHHHHHHHHcCCC
Confidence 577888887777766655443322233333 222222221 0111 11234444455556666788999
Q ss_pred EEEEEchhcchhhH-HHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCC--CCHHHHHhcC
Q 024298 140 HVAILDGITMGCGA-GISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEK--LNGVEMIACG 216 (269)
Q Consensus 140 ~Iaav~G~a~GgG~-~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~--i~a~eA~~~G 216 (269)
+|+.|-|.+++||| .-.+.+|-.||-++ +.+-..+-- +..++.++.=..-.++.-+--+ .+.+.-.++|
T Consensus 108 vI~Lv~G~A~SGaFLA~GlqA~rl~AL~g-------a~i~vM~~~-s~ARVTk~~ve~Le~la~s~PvfA~gi~ny~~lG 179 (234)
T PF06833_consen 108 VIGLVYGKAMSGAFLAHGLQANRLIALPG-------AMIHVMGKP-SAARVTKRPVEELEELAKSVPVFAPGIENYAKLG 179 (234)
T ss_pred eEEEEecccccHHHHHHHHHhcchhcCCC-------CeeecCChH-HhHHHhhcCHHHHHHHhhcCCCcCCCHHHHHHhc
Confidence 99999999999998 58888888887663 332222211 2333333322222445444333 4456677999
Q ss_pred ccceeccC
Q 024298 217 LATHYTLN 224 (269)
Q Consensus 217 Lv~~vv~~ 224 (269)
.++++.+.
T Consensus 180 ~l~~l~~~ 187 (234)
T PF06833_consen 180 ALDELWDG 187 (234)
T ss_pred cHHHHhcc
Confidence 99999884
No 161
>PLN02522 ATP citrate (pro-S)-lyase
Probab=52.70 E-value=41 Score=33.49 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCCceEEEEEcC-CCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcc
Q 024298 72 RLKRLYESWEENPDIGFVLMKGA-GRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITM 149 (269)
Q Consensus 72 eL~~~l~~~~~d~~v~~vVltg~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~ 149 (269)
.+.+.|+.+++||+.++|++.++ |. ..-.++.+ ..++.. ..||||+.+-|.+.
T Consensus 209 ~~~D~L~~~~~Dp~Tk~IvlygEiGg--------------------~~e~~f~e----a~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 209 TLSDHVLRFNNIPQIKMIVVLGELGG--------------------RDEYSLVE----ALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred CHHHHHHHHhcCCCCCEEEEEEecCc--------------------hhHHHHHH----HHHHhc-CCCCEEEEeccCCC
Confidence 35667888888899999998886 31 00122222 223333 68999999988876
No 162
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=49.34 E-value=71 Score=23.17 Aligned_cols=50 Identities=10% Similarity=-0.007 Sum_probs=35.5
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC
Q 024298 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG 95 (269)
Q Consensus 41 ~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g 95 (269)
-.+.++..+++.+|++..+ ++.+...++.+.+..+..++..+.|++--.+
T Consensus 3 ~~i~~~~~~~~~vi~~~G~-----l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 3 LNIETEVQEGVVIVRLSGE-----LDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred eEEEEEEECCEEEEEEecc-----cccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 3577888999999999743 5556677777777666554556778877655
No 163
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=47.82 E-value=1.1e+02 Score=22.64 Aligned_cols=49 Identities=27% Similarity=0.359 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHH-HccCCCcEEEEEch
Q 024298 71 GRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYL-QGTFVKPHVAILDG 146 (269)
Q Consensus 71 ~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~-i~~~~kp~Iaav~G 146 (269)
+++.++|+++-.++++.+|++|- .+++.+...++. +....+|+|-.+.|
T Consensus 30 ee~~~~l~~l~~~~d~gII~Ite---------------------------~~~~~i~e~i~~~~~~~~~P~ii~IP~ 79 (100)
T PRK02228 30 EKLDEAVEEVLEDDDVGILVMHD---------------------------DDLEKLPRRLRRTLEESVEPTVVTLGG 79 (100)
T ss_pred HHHHHHHHHHhhCCCEEEEEEeh---------------------------hHhHhhHHHHHHHHhcCCCCEEEEECC
Confidence 56788888886678899998883 122222333333 56788999999965
No 164
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=45.34 E-value=77 Score=23.01 Aligned_cols=53 Identities=8% Similarity=0.101 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHH-ccCCCcEEEEEchh
Q 024298 69 MVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQ-GTFVKPHVAILDGI 147 (269)
Q Consensus 69 ~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i-~~~~kp~Iaav~G~ 147 (269)
--+++.++|+++.+++++.+|+++- .+++.+...+..+ .....|+|..+-+.
T Consensus 26 ~~ee~~~~l~~l~~~~~~gIIii~e---------------------------~~~~~~~~~l~~~~~~~~~P~iv~IP~~ 78 (95)
T PF01990_consen 26 DPEEAEEALKELLKDEDVGIIIITE---------------------------DLAEKIRDELDEYREESSLPLIVEIPSK 78 (95)
T ss_dssp SHHHHHHHHHHHHHHTTEEEEEEEH---------------------------HHHTTHHHHHHHHHHTSSSSEEEEESTT
T ss_pred CHHHHHHHHHHHhcCCCccEEEeeH---------------------------HHHHHHHHHHHHHHhccCCceEEEcCCC
Confidence 3467788888888888899999883 1222333333333 46789999998665
Q ss_pred c
Q 024298 148 T 148 (269)
Q Consensus 148 a 148 (269)
-
T Consensus 79 ~ 79 (95)
T PF01990_consen 79 E 79 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 165
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=42.07 E-value=90 Score=27.18 Aligned_cols=54 Identities=7% Similarity=0.119 Sum_probs=40.8
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCc
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAF 98 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F 98 (269)
.|..+.+...|.++ .++..+.+|.+.+..+...+.++... .+++-|+.|.|+.|
T Consensus 4 ~~~rillkLsGe~l-----~g~~~~gid~~~i~~~a~~i~~~~~~-g~eV~iVvGGGni~ 57 (238)
T COG0528 4 KYMRILLKLSGEAL-----AGEQGFGIDPEVLDRIANEIKELVDL-GVEVAVVVGGGNIA 57 (238)
T ss_pred ceEEEEEEeeccee-----cCCCCCCCCHHHHHHHHHHHHHHHhc-CcEEEEEECCCHHH
Confidence 56677777777754 23344789999999999999999865 57888888877533
No 166
>PRK06091 membrane protein FdrA; Validated
Probab=41.10 E-value=74 Score=31.28 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcc
Q 024298 72 RLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITM 149 (269)
Q Consensus 72 eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~ 149 (269)
.+.+.|+.+.+||+.++|++.++.+ .+... + +++...+.+.||||+..-|..-
T Consensus 239 ~~~D~L~~L~~DP~TkvIvly~kpp-------------------aE~v~---~---~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 239 SALTALEMLSADEKSEVIAFVSKPP-------------------AEAVR---L---KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecC-------------------chHHH---H---HHHHHHhhCCCCEEEEEecCCc
Confidence 3445556666666667766665421 01111 1 3444444569999999998654
No 167
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=40.65 E-value=2.8e+02 Score=25.07 Aligned_cols=134 Identities=13% Similarity=0.026 Sum_probs=68.4
Q ss_pred ccccCcEEEEEeCCE---EEEEEcCCCCCCCCCHHHHHHHHHHH-HHHhcCCCceEEEEEcC-CCCccccCCh-hHHH--
Q 024298 37 DYLQDQVLVEGRAKS---RAAILNRPSNLNALNTSMVGRLKRLY-ESWEENPDIGFVLMKGA-GRAFCSGGDV-IALY-- 108 (269)
Q Consensus 37 ~~~~~~v~~~~~~~v---~~I~ln~p~~~Nal~~~~~~eL~~~l-~~~~~d~~v~~vVltg~-g~~F~~G~Dl-~~~~-- 108 (269)
...++.+.+-.+|++ -.+.. .....|.++.+-+.+-...+ .++...+.-++.||-|. .+.|--+-+. ..+.
T Consensus 95 ~~~FDlvi~p~HD~~~~~~Nvl~-t~ga~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~ 173 (311)
T PF06258_consen 95 PRPFDLVIVPEHDRLPRGPNVLP-TLGAPNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQ 173 (311)
T ss_pred ccccCEEEECcccCcCCCCceEe-cccCCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHH
Confidence 345666776555544 11111 22236999999888877666 34444455556555554 4666544431 1111
Q ss_pred --HhhccC--------ChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCccc
Q 024298 109 --QLLNEG--------KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ 176 (269)
Q Consensus 109 --~~~~~~--------~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~ 176 (269)
...... +...-.+..+. +...+...+.. -..+|.--+-=.++...||.+|+++++.=.+.|+-
T Consensus 174 l~~~~~~~~~~~~vttSRRTp~~~~~~---L~~~~~~~~~~--~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA~ 246 (311)
T PF06258_consen 174 LAALAAAYGGSLLVTTSRRTPPEAEAA---LRELLKDNPGV--YIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEAA 246 (311)
T ss_pred HHHHHHhCCCeEEEEcCCCCcHHHHHH---HHHhhcCCCce--EEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHHH
Confidence 111000 01111111121 22222233333 22355556666789999999999998765555553
No 168
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=36.59 E-value=1.3e+02 Score=22.26 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=38.9
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--------ceEEEEEcCC
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPD--------IGFVLMKGAG 95 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~--------v~~vVltg~g 95 (269)
+.++..+++.++.++.| ++.....++.+.+........ ++.|||--.+
T Consensus 2 ~~~~~~~~v~ii~~~g~-----l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~ 57 (117)
T PF01740_consen 2 IEIETHDGVLIIRLDGP-----LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSG 57 (117)
T ss_dssp CEEEEETTEEEEEEESE-----ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETT
T ss_pred CeeEEECCEEEEEEeeE-----EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEe
Confidence 45778999999999865 888889999999998887664 6889988554
No 169
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=35.65 E-value=81 Score=28.47 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcc
Q 024298 72 RLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITM 149 (269)
Q Consensus 72 eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~ 149 (269)
++.+.|+.+.+||+.++|++..++ .|.++++ ..++.+ ... ..||+|+..-|..-
T Consensus 192 ~~~d~L~yl~~Dp~T~~I~ly~E~----~G~~~~d------------~~~f~~-------aa~-~~KPVV~lk~Grs~ 245 (300)
T PLN00125 192 NFVDCLEKFVKDPQTEGIILIGEI----GGTAEED------------AAAFIK-------ESG-TEKPVVAFIAGLTA 245 (300)
T ss_pred CHHHHHHHHhhCCCCcEEEEEecc----CCchHHH------------HHHHHH-------Hhc-CCCCEEEEEecCCC
Confidence 355666777777777777777652 1111111 122222 222 28999999988863
No 170
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=33.84 E-value=52 Score=28.41 Aligned_cols=76 Identities=12% Similarity=0.053 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcC-CCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchh-cc
Q 024298 72 RLKRLYESWEEN-PDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGI-TM 149 (269)
Q Consensus 72 eL~~~l~~~~~d-~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~-a~ 149 (269)
...++|+++..+ .+|..||..+.-..+.-|+|..- ++++.--|-.-=.-++|. |.
T Consensus 107 Aa~~AL~~~g~~~~dIthlv~vs~TG~~~PglD~~l-----------------------~~~LgL~~~v~R~~i~~~GC~ 163 (226)
T PF00195_consen 107 AARKALAEAGLDPSDITHLVTVSCTGIAAPGLDARL-----------------------INRLGLRPDVQRTPIFGMGCA 163 (226)
T ss_dssp HHHHHHHHHTS-GGGECEEEEEESSSSECS-HHHHH-----------------------HHHHT--TTSEEEEEES-GGG
T ss_pred HHHHHHHHcCCCCcccceEEEEecCCcCCCchhHHH-----------------------HhcCCCCCCcEEEEEeccchh
Confidence 334556666544 45767776664445666666542 233333444444556676 78
Q ss_pred hhhHHHHHhCCEEEEeCCceE
Q 024298 150 GCGAGISLQGMYRVVTDKTVF 170 (269)
Q Consensus 150 GgG~~Lal~cD~~ia~~~a~f 170 (269)
||...|..+.|+.-+.++++.
T Consensus 164 gg~~~L~~A~~~~~~~p~a~V 184 (226)
T PF00195_consen 164 GGAAGLRRAKDIARANPGARV 184 (226)
T ss_dssp HHHHHHHHHHHHHHHSTT-EE
T ss_pred hHHHHHHHHHHHHhCCccceE
Confidence 888889999997655555443
No 171
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=32.57 E-value=1.9e+02 Score=20.85 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=33.4
Q ss_pred EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC
Q 024298 44 LVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG 95 (269)
Q Consensus 44 ~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g 95 (269)
.++..+++.++.++.+ ++.....++.+.+..+-..+..+.++|--.+
T Consensus 2 ~~~~~~~~~vi~l~G~-----L~f~~~~~~~~~l~~~~~~~~~~~vilDls~ 48 (106)
T TIGR02886 2 EFEVKGDVLIVRLSGE-----LDHHTAERVRRKIDDAIERRPIKHLILNLKN 48 (106)
T ss_pred eEEEECCEEEEEEecc-----cchhhHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4577889999999654 6667777777777665433456888887655
No 172
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=32.51 E-value=77 Score=31.14 Aligned_cols=76 Identities=18% Similarity=0.146 Sum_probs=48.8
Q ss_pred CCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEE
Q 024298 83 NPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYR 162 (269)
Q Consensus 83 d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ 162 (269)
.|+.-|+|-|-..=-+-.|.+..++. ..+.+....-+..+.+.+..+.++.+|+|.++|-+..----++...-++.
T Consensus 322 ~P~~~VlVaTvraLK~hgg~~~~~l~----~en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~c 397 (557)
T PRK13505 322 KPDAVVIVATVRALKMHGGVAKDDLK----EENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTDTDAEIAALKELC 397 (557)
T ss_pred CCCEEEEEeehHHHHHcCCCChhhcc----ccCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35555555544432234455554432 24455566667778888888999999999999999887766665544443
No 173
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=31.92 E-value=74 Score=27.54 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=37.6
Q ss_pred EEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhH
Q 024298 46 EGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIA 106 (269)
Q Consensus 46 ~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~ 106 (269)
+...+|.+++=|=..+.|.+. ..+++|.+.+..+++.+.++|-+=| ...|.+|.|+..
T Consensus 135 eetk~V~ivlEnMAGqGn~vG-~tfeelk~ii~~Ikdk~RigVClDT--CH~FaaGyDI~T 192 (281)
T KOG3997|consen 135 EETKNVIIVLENMAGQGNSVG-GTFEELKFIIGKIKDKSRIGVCLDT--CHTFAAGYDIRT 192 (281)
T ss_pred HhccceEEEeecccCCCCccc-ccHHHHHHHHHhhcchhhheeeHhh--hhhhccccccch
Confidence 344556666666666777777 5667788888887766555544422 356888888864
No 174
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=31.43 E-value=85 Score=29.90 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcc
Q 024298 71 GRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITM 149 (269)
Q Consensus 71 ~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~ 149 (269)
-.+.+.++.+.+|++.++|++..++- .+..+ +....++... .||||+..-|..-
T Consensus 189 ~~~~d~l~~l~~D~~t~~I~ly~E~~--------------------~~~~~----f~~aa~~a~~-~KPVv~~k~Grs~ 242 (447)
T TIGR02717 189 IDESDLLEYLADDPDTKVILLYLEGI--------------------KDGRK----FLKTAREISK-KKPIVVLKSGTSE 242 (447)
T ss_pred CCHHHHHHHHhhCCCCCEEEEEecCC--------------------CCHHH----HHHHHHHHcC-CCCEEEEecCCCh
Confidence 46678888899999999999987640 01122 2334444444 8999999988864
No 175
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=31.02 E-value=2e+02 Score=26.14 Aligned_cols=31 Identities=6% Similarity=-0.028 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.-++.+.+.+|.+.+++.-+++++.++|||-
T Consensus 55 s~~t~~~w~~la~~i~~~~~~~~~dG~VVtH 85 (323)
T smart00870 55 SNMTPADWLKLAKRINEALADDGYDGVVVTH 85 (323)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEec
Confidence 4589999999999998865556666766663
No 176
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=29.28 E-value=2.8e+02 Score=25.63 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDIGFVLMK 92 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~vVlt 92 (269)
..++++.+.+|.+.+.+.-.++++.+||||
T Consensus 78 ~~m~~~~w~~la~~I~~~~~~~~~dGvVIt 107 (351)
T COG0252 78 SDMTPEDWLRLAEAINEALDDGDVDGVVIT 107 (351)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCeEEEe
Confidence 569999999999999998878777777777
No 177
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=29.08 E-value=1.2e+02 Score=27.12 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCCCceEEEEEcC
Q 024298 72 RLKRLYESWEENPDIGFVLMKGA 94 (269)
Q Consensus 72 eL~~~l~~~~~d~~v~~vVltg~ 94 (269)
++.+.|+.+.+||+.++|++..+
T Consensus 185 ~~~D~l~~l~~Dp~T~~I~lylE 207 (286)
T TIGR01019 185 SFIDVLEAFEKDPETEAIVMIGE 207 (286)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEe
Confidence 56677788888899999998876
No 178
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=28.97 E-value=1.8e+02 Score=26.89 Aligned_cols=42 Identities=7% Similarity=0.079 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
+-...+.+-+ ...++++.+.+|.+.+++.-.++++..+|||-
T Consensus 72 i~~~~~~~id-S~~mt~~dw~~la~~I~~~~~~~~~~GiVVtH 113 (349)
T TIGR00520 72 IKGEQIVNVG-SQDMNEEVLLKLAKGINELLASDDYDGIVITH 113 (349)
T ss_pred EEEEEccCCC-cccCCHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 3334443333 35688999999999998877666677777763
No 179
>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=28.94 E-value=88 Score=29.52 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=27.3
Q ss_pred ccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHcc
Q 024298 98 FCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGT 135 (269)
Q Consensus 98 F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 135 (269)
||.|+||..+......-+....+.+...+...++.++.
T Consensus 90 yC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~ 127 (429)
T KOG0595|consen 90 YCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHE 127 (429)
T ss_pred eCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999988765555566667777776666665543
No 180
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=27.50 E-value=1.6e+02 Score=24.27 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.+.+|.|. |.+|.....++.+.+.++..+ .. .|++.+
T Consensus 155 llllDEPt--~~LD~~~~~~~~~~l~~~~~~-~~-tvi~~s 191 (211)
T cd03225 155 ILLLDEPT--AGLDPAGRRELLELLKKLKAE-GK-TIIIVT 191 (211)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHc-CC-EEEEEe
Confidence 46778884 899999999999999888654 33 444443
No 181
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.06 E-value=1.3e+02 Score=25.83 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHccCC--CcEEEEEchhcchhhHHHHHhCCE
Q 024298 122 FFETLYQFVYLQGTFV--KPHVAILDGITMGCGAGISLQGMY 161 (269)
Q Consensus 122 ~~~~~~~l~~~i~~~~--kp~Iaav~G~a~GgG~~Lal~cD~ 161 (269)
....+...+..+...+ .+.=..+-|+|+||++.+..+++.
T Consensus 92 ~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~ 133 (236)
T COG0412 92 VLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRA 133 (236)
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhccc
Confidence 3344444444454444 333345679999999999999987
No 182
>smart00463 SMR Small MutS-related domain.
Probab=26.99 E-value=1.4e+02 Score=20.61 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhcCCC-ceEEEEEcCCCC
Q 024298 67 TSMVGRLKRLYESWEENPD-IGFVLMKGAGRA 97 (269)
Q Consensus 67 ~~~~~eL~~~l~~~~~d~~-v~~vVltg~g~~ 97 (269)
.+.+..|.+.++.+..... -.+.||+|.|.+
T Consensus 12 ~eA~~~l~~~l~~~~~~~~~~~~~II~G~G~~ 43 (80)
T smart00463 12 EEALTALDKFLNNARLKGLEQKLVIITGKGKH 43 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcccCC
Confidence 4677888888888877654 478999999865
No 183
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=26.67 E-value=1.6e+02 Score=24.36 Aligned_cols=39 Identities=8% Similarity=0.201 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA 94 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~ 94 (269)
.+.+|.|. +.+|.....++.+.+.++..+... .|++++.
T Consensus 161 lllLDEP~--~~LD~~~~~~l~~~l~~~~~~~~~-tii~~sH 199 (218)
T cd03255 161 IILADEPT--GNLDSETGKEVMELLRELNKEAGT-TIVVVTH 199 (218)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcCC-eEEEEEC
Confidence 56788885 899999999999999988653333 4555443
No 184
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=26.33 E-value=2e+02 Score=22.84 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.+.+|.|. +.+|.+....+.+.+.++.++ .. .+++++
T Consensus 103 illlDEP~--~~LD~~~~~~l~~~l~~~~~~-~~-tiii~s 139 (163)
T cd03216 103 LLILDEPT--AALTPAEVERLFKVIRRLRAQ-GV-AVIFIS 139 (163)
T ss_pred EEEEECCC--cCCCHHHHHHHHHHHHHHHHC-CC-EEEEEe
Confidence 46678884 899999999999999988643 33 444444
No 185
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=26.16 E-value=1.4e+02 Score=25.73 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=28.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCC
Q 024298 58 RPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRA 97 (269)
Q Consensus 58 ~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~ 97 (269)
+++..+.++.+.++++.+.+..+. ..++|++.|.|..
T Consensus 13 ~~~~~~~~~~~~l~~l~~~l~~l~---g~~vvlVhGgg~~ 49 (252)
T cd04241 13 DKDRPETIREENLERIARELAEAI---DEKLVLVHGGGSF 49 (252)
T ss_pred cCCCCCccCHHHHHHHHHHHHhcc---CCCEEEEECCCcc
Confidence 343456799999999999998875 4688999987653
No 186
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.72 E-value=1.7e+02 Score=24.30 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=26.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMK 92 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVlt 92 (269)
.+.+|.|. +.+|.....++.+.+.++..+....+|++|
T Consensus 152 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 189 (214)
T cd03297 152 LLLLDEPF--SALDRALRLQLLPELKQIKKNLNIPVIFVT 189 (214)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcCcEEEEEe
Confidence 45677874 899999999999999888653233334433
No 187
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=25.57 E-value=1.9e+02 Score=24.49 Aligned_cols=39 Identities=13% Similarity=0.311 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA 94 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~ 94 (269)
.+.+|.|. +.+|.....++.+.+.++..+.. ..|++++.
T Consensus 174 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tiiivsH 212 (236)
T cd03267 174 ILFLDEPT--IGLDVVAQENIRNFLKEYNRERG-TTVLLTSH 212 (236)
T ss_pred EEEEcCCC--CCCCHHHHHHHHHHHHHHHhcCC-CEEEEEec
Confidence 56788885 89999999999999998865433 34555543
No 188
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=25.05 E-value=2.2e+02 Score=23.33 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=35.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChh
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVI 105 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~ 105 (269)
.+.+|.|. +.+|......+.+.+.++.++ . ..|++++....|-...|..
T Consensus 148 ~lilDEP~--~~LD~~~~~~l~~~l~~~~~~-~-~tiii~sh~~~~~~~~d~~ 196 (200)
T PRK13540 148 LWLLDEPL--VALDELSLLTIITKIQEHRAK-G-GAVLLTSHQDLPLNKADYE 196 (200)
T ss_pred EEEEeCCC--cccCHHHHHHHHHHHHHHHHc-C-CEEEEEeCCchhccccchh
Confidence 46778885 899999999999999997543 3 3566666555555555554
No 189
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=25.02 E-value=1.8e+02 Score=24.29 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.+.+|.|. +.+|......+.+.+.++..+... .|++.+
T Consensus 167 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~-tii~~s 204 (228)
T PRK10584 167 VLFADEPT--GNLDRQTGDKIADLLFSLNREHGT-TLILVT 204 (228)
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHHhcCC-EEEEEe
Confidence 56788885 899999999999999888654333 444444
No 190
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=24.72 E-value=2.9e+02 Score=25.02 Aligned_cols=41 Identities=7% Similarity=0.118 Sum_probs=29.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG 95 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g 95 (269)
.+.+.... ...-+.+-+..+..-|+.+.. ..+.++||||+.
T Consensus 69 ~~~~~~h~-~~~~~~~hl~~~y~~~~~i~~-~~~DG~IITGAp 109 (302)
T PRK05368 69 LLRIDSHE-SKNTPAEHLENFYCTFEDIKD-EKFDGLIITGAP 109 (302)
T ss_pred EEecCCcC-CCCCCHHHHHHhccCHHHhcc-CCCCEEEEcCCC
Confidence 34444433 344667889999999999864 568999999975
No 191
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=24.71 E-value=1.2e+02 Score=23.44 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=30.0
Q ss_pred EEEEEEcCCCCCCCC--C----------HHHHHHHHHHHHHH--hcCCCceEEEEEcCC
Q 024298 51 SRAAILNRPSNLNAL--N----------TSMVGRLKRLYESW--EENPDIGFVLMKGAG 95 (269)
Q Consensus 51 v~~I~ln~p~~~Nal--~----------~~~~~eL~~~l~~~--~~d~~v~~vVltg~g 95 (269)
+..|+.+-|.|...= + ..++.++.+.+... .+.+.++.|||.|.|
T Consensus 25 ~~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 25 LQRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 345667777776531 2 35667777777776 556789999999865
No 192
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=24.42 E-value=3.3e+02 Score=20.88 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchh
Q 024298 70 VGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGI 147 (269)
Q Consensus 70 ~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~ 147 (269)
.+++.++|+++-.++++.+|+||- ..++.+.+.+.... ...|+|-.+-+.
T Consensus 45 ~eei~~~~~~~l~~~digIIlIte---------------------------~~a~~i~~~I~~~~-~~~PaIieIP~k 94 (115)
T TIGR01101 45 VSEIEDCFNRFLKRDDIAIILINQ---------------------------HIAEMIRHAVDAHT-RSIPAVLEIPSK 94 (115)
T ss_pred HHHHHHHHHHHhhcCCeEEEEEcH---------------------------HHHHHhHHHHHhcC-CcCCEEEEECCC
Confidence 467888888866788898888872 23344455555533 778888888663
No 193
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=24.35 E-value=1.5e+02 Score=26.61 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCCceEEEEEcC
Q 024298 72 RLKRLYESWEENPDIGFVLMKGA 94 (269)
Q Consensus 72 eL~~~l~~~~~d~~v~~vVltg~ 94 (269)
.+.+.|+.+.+||+.++|++..+
T Consensus 187 ~~~D~l~~l~~Dp~T~~I~lylE 209 (291)
T PRK05678 187 NFIDVLEAFEEDPETEAIVMIGE 209 (291)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEe
Confidence 45667777888888888888765
No 194
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=24.33 E-value=1.9e+02 Score=23.99 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.+.+|.|. +.+|.....++.+.+..+..+.. +.||+.+
T Consensus 162 illlDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~t 199 (221)
T TIGR02211 162 LVLADEPT--GNLDNNNAKIIFDLMLELNRELN-TSFLVVT 199 (221)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHhcC-CEEEEEe
Confidence 45778885 89999999999999988865433 3444444
No 195
>PLN03037 lipase class 3 family protein; Provisional
Probab=24.26 E-value=79 Score=30.81 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEE
Q 024298 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRV 163 (269)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~i 163 (269)
+....+..++......+...=-.|.||.+||.+.+..+.|+..
T Consensus 299 QVl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~DIa~ 341 (525)
T PLN03037 299 QVMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYEAAR 341 (525)
T ss_pred HHHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHHHHH
Confidence 3445555555544444444445589999999999999988753
No 196
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=24.20 E-value=1.4e+02 Score=24.73 Aligned_cols=40 Identities=15% Similarity=0.001 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHccCC--CcEEEEEchhcchhhHHHHHhCCE
Q 024298 122 FFETLYQFVYLQGTFV--KPHVAILDGITMGCGAGISLQGMY 161 (269)
Q Consensus 122 ~~~~~~~l~~~i~~~~--kp~Iaav~G~a~GgG~~Lal~cD~ 161 (269)
....+...+..+...+ .+--..+-|+|.||.+.+.++++.
T Consensus 78 ~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~ 119 (218)
T PF01738_consen 78 VAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD 119 (218)
T ss_dssp HHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc
Confidence 3344555566666666 344556679999999999888764
No 197
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=24.01 E-value=2e+02 Score=23.82 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=26.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMK 92 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVlt 92 (269)
.+.+|.|. +.+|.+....+.+.+.++.+.....+|++|
T Consensus 149 llllDEPt--~~LD~~~~~~~~~~l~~~~~~~~~tii~vs 186 (213)
T TIGR01277 149 ILLLDEPF--SALDPLLREEMLALVKQLCSERQRTLLMVT 186 (213)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45678885 889999999999999987654333344433
No 198
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=23.94 E-value=1.6e+02 Score=25.31 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=31.9
Q ss_pred CceEEEEEcCC-CCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhc
Q 024298 85 DIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGIT 148 (269)
Q Consensus 85 ~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a 148 (269)
.+.++||||.. ++|+ |.. |...+..++..+....|+++..+-||-
T Consensus 59 ky~gfvIsGS~~dAf~---d~d----------------WI~KLcs~~kkld~mkkkvlGICFGHQ 104 (245)
T KOG3179|consen 59 KYDGFVISGSKHDAFS---DAD----------------WIKKLCSFVKKLDFMKKKVLGICFGHQ 104 (245)
T ss_pred hhceEEEeCCcccccc---cch----------------HHHHHHHHHHHHHhhccceEEEeccHH
Confidence 36789999986 7776 333 334556677777788899988888773
No 199
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.85 E-value=1.9e+02 Score=24.36 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMK 92 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVlt 92 (269)
.+.+|.|. +.+|.....++.+.+.++.++....+|+++
T Consensus 151 llllDEP~--~gLD~~~~~~l~~~l~~~~~~~~~tiii~s 188 (232)
T cd03300 151 VLLLDEPL--GALDLKLRKDMQLELKRLQKELGITFVFVT 188 (232)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 46778885 899999999999999988754333444444
No 200
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=23.76 E-value=95 Score=30.42 Aligned_cols=42 Identities=26% Similarity=0.408 Sum_probs=33.1
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccC
Q 024298 54 AILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGG 102 (269)
Q Consensus 54 I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~ 102 (269)
+.||.|. |=||.+.++.|.++|.... ..||+-+..+.|....
T Consensus 461 LiLDEPT--NhLDi~s~~aLe~aL~~f~-----Gtvl~VSHDr~Fl~~v 502 (530)
T COG0488 461 LLLDEPT--NHLDIESLEALEEALLDFE-----GTVLLVSHDRYFLDRV 502 (530)
T ss_pred EEEcCCC--ccCCHHHHHHHHHHHHhCC-----CeEEEEeCCHHHHHhh
Confidence 5789995 9999999999999999874 4577777766665543
No 201
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.44 E-value=2e+02 Score=23.71 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=26.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMK 92 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVlt 92 (269)
.+.+|.|. +.+|.....++.+.+.++..+...-+|++|
T Consensus 149 llllDEP~--~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 186 (211)
T cd03298 149 VLLLDEPF--AALDPALRAEMLDLVLDLHAETKMTVLMVT 186 (211)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45678874 889999999999999887643333334433
No 202
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=23.42 E-value=2.2e+02 Score=22.98 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.+.+|.|. +.+|.+....+.+.+.++..+... .+++++
T Consensus 118 llllDEP~--~~LD~~~~~~~~~~l~~~~~~~~~-tiii~s 155 (180)
T cd03214 118 ILLLDEPT--SHLDIAHQIELLELLRRLARERGK-TVVMVL 155 (180)
T ss_pred EEEEeCCc--cCCCHHHHHHHHHHHHHHHHhcCC-EEEEEe
Confidence 46788885 899999999999999988653233 445444
No 203
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=23.41 E-value=2.5e+02 Score=24.80 Aligned_cols=71 Identities=24% Similarity=0.401 Sum_probs=42.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
.+.|-+--.+ .|.-| +.++|+.+-.|++.+.||+-|+ -|..- .++..++....
T Consensus 204 slcvGiGGDp-FnGT~------FID~L~vFl~D~~t~GIiliGE-----IGG~A-----------Ee~AA~flk~~---- 256 (329)
T KOG1255|consen 204 SLCVGIGGDP-FNGTN------FIDCLEVFLEDPETEGIILIGE-----IGGSA-----------EEEAAEFLKEY---- 256 (329)
T ss_pred eeEEeecCCC-CCCcc------HHHHHHHHhcCcccceEEEEec-----cCChh-----------hHHHHHHHHHh----
Confidence 4445554322 35443 6677888888999999999986 12111 12222232221
Q ss_pred HHHccCCCcEEEEEchhcc
Q 024298 131 YLQGTFVKPHVAILDGITM 149 (269)
Q Consensus 131 ~~i~~~~kp~Iaav~G~a~ 149 (269)
.-...+||||+.+-|...
T Consensus 257 -nSg~~~kPVvsFIAG~tA 274 (329)
T KOG1255|consen 257 -NSGSTAKPVVSFIAGVTA 274 (329)
T ss_pred -ccCCCCCceeEEeecccC
Confidence 234578999999988643
No 204
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.40 E-value=1.9e+02 Score=24.34 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=26.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.+.+|.|. +.+|......+.+.+.++..+... .||+.+
T Consensus 157 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~-tvi~vs 194 (235)
T cd03261 157 LLLYDEPT--AGLDPIASGVIDDLIRSLKKELGL-TSIMVT 194 (235)
T ss_pred EEEecCCc--ccCCHHHHHHHHHHHHHHHHhcCc-EEEEEe
Confidence 45677874 889999999999999887653233 344443
No 205
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=23.25 E-value=2.1e+02 Score=24.14 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=26.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMK 92 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVlt 92 (269)
.+.+|.|. +.+|.....++.+.+.++..+....+|++|
T Consensus 135 lllLDEPt--~gLD~~~~~~l~~~l~~~~~~~~~tii~~s 172 (230)
T TIGR01184 135 VLLLDEPF--GALDALTRGNLQEELMQIWEEHRVTVLMVT 172 (230)
T ss_pred EEEEcCCC--cCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45678874 889999999999988887654333334333
No 206
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.11 E-value=2e+02 Score=23.72 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.+.+|.|. +.+|......+.+.+.++..... +.|++++
T Consensus 151 ~lllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~s 188 (213)
T cd03259 151 LLLLDEPL--SALDAKLREELREELKELQRELG-ITTIYVT 188 (213)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcC-CEEEEEe
Confidence 56788885 89999999999999988764323 3445444
No 207
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=23.11 E-value=2.2e+02 Score=24.72 Aligned_cols=37 Identities=16% Similarity=0.477 Sum_probs=30.5
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 54 AILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 54 I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
+-||.|. .|||++++.|..+++..+.++. ..-|++|-
T Consensus 158 mLFDEPT--SALDPElv~EVL~vm~~LA~eG-mTMivVTH 194 (240)
T COG1126 158 MLFDEPT--SALDPELVGEVLDVMKDLAEEG-MTMIIVTH 194 (240)
T ss_pred EeecCCc--ccCCHHHHHHHHHHHHHHHHcC-CeEEEEec
Confidence 5788885 7999999999999999998754 56667664
No 208
>PRK14556 pyrH uridylate kinase; Provisional
Probab=22.65 E-value=2.3e+02 Score=24.90 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=41.5
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCcc
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFC 99 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~ 99 (269)
|+.|.+...|.++. +++.+.+|.+.+.++.+.+..+.+. .+++.|+.|.|..|.
T Consensus 15 ~~rvllKlsGe~l~-----~~~~~~~d~~~~~~~a~~i~~~~~~-g~~i~iVvGGGni~R 68 (249)
T PRK14556 15 LKRILLKLSGESLS-----ADQGFGINVESAQPIINQIKTLTNF-GVELALVVGGGNILR 68 (249)
T ss_pred hCEEEEEEehhhCc-----CCCCCCcCHHHHHHHHHHHHHHHhC-CcEEEEEECCCHHHh
Confidence 66677777776442 3345789999999999999998753 579999999887775
No 209
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.54 E-value=2.2e+02 Score=23.64 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMK 92 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVlt 92 (269)
.+.+|.|. +.+|......+.+.+.++..+....+|++|
T Consensus 152 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tvi~~t 189 (220)
T cd03265 152 VLFLDEPT--IGLDPQTRAHVWEYIEKLKEEFGMTILLTT 189 (220)
T ss_pred EEEEcCCc--cCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46788885 899999999999999988654343444444
No 210
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=22.52 E-value=2.2e+02 Score=25.37 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=32.0
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC
Q 024298 52 RAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA 94 (269)
Q Consensus 52 ~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~ 94 (269)
-.+.||.|- |.||+....++.+.+..+..+.. ..|++++.
T Consensus 156 ~lliLDEPt--~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH 195 (293)
T COG1131 156 ELLILDEPT--SGLDPESRREIWELLRELAKEGG-VTILLSTH 195 (293)
T ss_pred CEEEECCCC--cCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCC
Confidence 346789985 99999999999999999987654 46666653
No 211
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=22.48 E-value=2.3e+02 Score=23.41 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=27.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.+.+|.|. +.+|.....++.+.+.++.. .. ..||+.+
T Consensus 153 llllDEPt--~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~s 189 (213)
T cd03235 153 LLLLDEPF--AGVDPKTQEDIYELLRELRR-EG-MTILVVT 189 (213)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHh-cC-CEEEEEe
Confidence 45678884 89999999999999998865 33 3444444
No 212
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=22.45 E-value=2.4e+02 Score=22.81 Aligned_cols=37 Identities=11% Similarity=0.281 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.+.+|.|. +.+|......+.+.+.++..+ .. .|++.+
T Consensus 148 llllDEPt--~~LD~~~~~~~~~~l~~~~~~-~~-tili~s 184 (190)
T TIGR01166 148 VLLLDEPT--AGLDPAGREQMLAILRRLRAE-GM-TVVIST 184 (190)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHc-CC-EEEEEe
Confidence 46788885 899999999999999988654 33 444444
No 213
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=22.37 E-value=2.1e+02 Score=23.78 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=25.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.+.+|.|. +.+|.....++.+.+.++..+... .|++++
T Consensus 166 lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~~~-tii~~s 203 (228)
T cd03257 166 LLIADEPT--SALDVSVQAQILDLLKKLQEELGL-TLLFIT 203 (228)
T ss_pred EEEecCCC--CCCCHHHHHHHHHHHHHHHHHcCC-EEEEEe
Confidence 45667774 788888888888888887653233 344443
No 214
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=22.32 E-value=2.2e+02 Score=23.92 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA 94 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~ 94 (269)
.+.+|.|. +.+|......+.+.+.++..+.... ||+.+.
T Consensus 158 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~t-vii~sh 196 (225)
T PRK10247 158 VLLLDEIT--SALDESNKHNVNEIIHRYVREQNIA-VLWVTH 196 (225)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCE-EEEEEC
Confidence 46778884 8999999999999999886543333 444443
No 215
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=22.31 E-value=2.1e+02 Score=24.85 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA 94 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~ 94 (269)
.+.+|.|. +.+|.....++.+.+.++..+... .||+++.
T Consensus 164 lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~g~-tiiivsH 202 (269)
T PRK11831 164 LIMFDEPF--VGQDPITMGVLVKLISELNSALGV-TCVVVSH 202 (269)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHHHHHhcCc-EEEEEec
Confidence 56778884 899999999999999988654333 4444443
No 216
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=22.16 E-value=5.5e+02 Score=22.68 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=50.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
.|+.|.. +..+.+..+...-.+.++-.-=.|-.+|.|-.-+. ....-.+..++.++.-.. ++.=
T Consensus 68 GNa~Dlg---q~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~psE~-----------n~y~Di~avye~Lr~~~g--~~~~ 131 (258)
T KOG1552|consen 68 GNAADLG---QMVELFKELSIFLNCNVVSYDYSGYGRSSGKPSER-----------NLYADIKAVYEWLRNRYG--SPER 131 (258)
T ss_pred CcccchH---HHHHHHHHHhhcccceEEEEecccccccCCCcccc-----------cchhhHHHHHHHHHhhcC--CCce
Confidence 4777776 66666776666555666666666767777754432 112222333334443333 4444
Q ss_pred EEEchhcchhhHHHHHhCCEE
Q 024298 142 AILDGITMGCGAGISLQGMYR 162 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~cD~~ 162 (269)
-.+-|+.+|.|..+-++|-.-
T Consensus 132 Iil~G~SiGt~~tv~Lasr~~ 152 (258)
T KOG1552|consen 132 IILYGQSIGTVPTVDLASRYP 152 (258)
T ss_pred EEEEEecCCchhhhhHhhcCC
Confidence 557799999999777776544
No 217
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=22.15 E-value=2.3e+02 Score=23.83 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=26.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.+.+|.|. +.+|.....++.+.+.++..+.. ..||+.+
T Consensus 166 lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~g-~tvii~s 203 (233)
T PRK11629 166 LVLADEPT--GNLDARNADSIFQLLGELNRLQG-TAFLVVT 203 (233)
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHHhCC-CEEEEEe
Confidence 46778874 88999999999999988754333 3444444
No 218
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.09 E-value=2.5e+02 Score=22.58 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=28.5
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 52 RAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 52 ~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
-.+.+|.|. +.+|......+.+.+.++..+.. +.+++++
T Consensus 120 ~llilDEP~--~~LD~~~~~~l~~~l~~~~~~~~-~tiii~s 158 (178)
T cd03229 120 DVLLLDEPT--SALDPITRREVRALLKSLQAQLG-ITVVLVT 158 (178)
T ss_pred CEEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEe
Confidence 456788885 89999999999999998875423 3444444
No 219
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=22.04 E-value=2.4e+02 Score=23.31 Aligned_cols=37 Identities=14% Similarity=0.395 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMK 92 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVlt 92 (269)
.+.+|.|. |.+|.....++.+.+.++... ...+|++|
T Consensus 159 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~~tii~vs 195 (216)
T TIGR00960 159 LLLADEPT--GNLDPELSRDIMRLFEEFNRR-GTTVLVAT 195 (216)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHC-CCEEEEEe
Confidence 46788885 899999999999999988643 33344443
No 220
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.93 E-value=2.3e+02 Score=23.56 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.+.+|.|. +.+|.....++.+.+.++..+... .|++.+
T Consensus 152 lllLDEPt--~~LD~~~~~~~~~~l~~~~~~~~~-tiii~s 189 (220)
T cd03293 152 VLLLDEPF--SALDALTREQLQEELLDIWRETGK-TVLLVT 189 (220)
T ss_pred EEEECCCC--CCCCHHHHHHHHHHHHHHHHHcCC-EEEEEe
Confidence 46788885 899999999999999887543333 344443
No 221
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=21.42 E-value=1.8e+02 Score=20.22 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccC
Q 024298 67 TSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGG 102 (269)
Q Consensus 67 ~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~ 102 (269)
.+....+.+.++.+.....-.+.||+|.|.+=..|.
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~ 44 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc
Confidence 466778888888887776678899999995544443
No 222
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.25 E-value=2.3e+02 Score=24.97 Aligned_cols=38 Identities=18% Similarity=0.398 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMK 92 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVlt 92 (269)
.+.+|.|. +.+|.....++.+.+.++..+....+|++|
T Consensus 166 illlDEPt--~~LD~~~~~~l~~~l~~l~~~~g~tvl~vt 203 (286)
T PRK13646 166 IIVLDEPT--AGLDPQSKRQVMRLLKSLQTDENKTIILVS 203 (286)
T ss_pred EEEEECCc--ccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45778885 899999999999999988654344455544
No 223
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=21.23 E-value=2.2e+02 Score=24.56 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMK 92 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVlt 92 (269)
.|.+|.|. +.+|......+.+.+.++..+....+|++|
T Consensus 173 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~g~tvii~t 210 (262)
T PRK09984 173 VILADEPI--ASLDPESARIVMDTLRDINQNDGITVVVTL 210 (262)
T ss_pred EEEecCcc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46778874 899999999999999988654333344444
No 224
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=21.15 E-value=2.2e+02 Score=24.72 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=26.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMK 92 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVlt 92 (269)
.+.||.|. +.+|......+.+.+.++......-+|++|
T Consensus 170 lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~g~tviivs 207 (267)
T PRK15112 170 VIIADEAL--ASLDMSMRSQLINLMLELQEKQGISYIYVT 207 (267)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcCcEEEEEe
Confidence 45777774 889999999999999987653233334433
No 225
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=21.07 E-value=2.4e+02 Score=23.27 Aligned_cols=38 Identities=5% Similarity=0.168 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.+.+|.|. +.+|.....++.+.+.++..+... .|++++
T Consensus 151 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~-tvi~~s 188 (213)
T cd03301 151 VFLMDEPL--SNLDAKLRVQMRAELKRLQQRLGT-TTIYVT 188 (213)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcCC-EEEEEe
Confidence 46778885 889999999999999887654333 444444
No 226
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=21.03 E-value=5.2e+02 Score=24.03 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=45.6
Q ss_pred HHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHc---cCCCcEEEEEchhcchhh
Q 024298 76 LYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQG---TFVKPHVAILDGITMGCG 152 (269)
Q Consensus 76 ~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~---~~~kp~Iaav~G~a~GgG 152 (269)
.+..+...-...++++--.|=.+|.|-- . ...+....+..++.++ .-++|.=-...|+.+|||
T Consensus 162 ~~~~~ak~~~aNvl~fNYpGVg~S~G~~-----------s---~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~ 227 (365)
T PF05677_consen 162 WIQRFAKELGANVLVFNYPGVGSSTGPP-----------S---RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGG 227 (365)
T ss_pred HHHHHHHHcCCcEEEECCCccccCCCCC-----------C---HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHH
Confidence 3444444556788998888877887742 1 1334445555555555 456888888899999999
Q ss_pred HHHHHh
Q 024298 153 AGISLQ 158 (269)
Q Consensus 153 ~~Lal~ 158 (269)
+.=...
T Consensus 228 Vqa~AL 233 (365)
T PF05677_consen 228 VQAEAL 233 (365)
T ss_pred HHHHHH
Confidence 854443
No 227
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=21.01 E-value=2.3e+02 Score=24.42 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=23.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEE 82 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~ 82 (269)
.+.+|.|. +.+|......+.+.+..+..
T Consensus 149 lllLDEPt--~~LD~~~~~~l~~~L~~~~~ 176 (255)
T PRK11248 149 LLLLDEPF--GALDAFTREQMQTLLLKLWQ 176 (255)
T ss_pred EEEEeCCC--ccCCHHHHHHHHHHHHHHHH
Confidence 46788885 89999999999999998743
No 228
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=21.00 E-value=6.7e+02 Score=24.38 Aligned_cols=103 Identities=11% Similarity=0.043 Sum_probs=57.6
Q ss_pred EEEEEeCCE--EEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHh
Q 024298 43 VLVEGRAKS--RAAILNRPS----------NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQL 110 (269)
Q Consensus 43 v~~~~~~~v--~~I~ln~p~----------~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~ 110 (269)
..++..+++ ..|.||.-. ..-.|+.+-+.-|.+.|+....+. ..||+.+.-...++|.........
T Consensus 295 YsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a~~--p~VVV~hHpPi~t~gi~~md~w~~ 372 (492)
T TIGR03768 295 YSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQADG--QLMIIAAHIPIAVSPIGSEMEWWL 372 (492)
T ss_pred eEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcCCC--ceEEEEeCCCcccCCccchhhhcc
Confidence 344444645 889998542 224589999999999999875332 457777776766655432211110
Q ss_pred hccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcc
Q 024298 111 LNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITM 149 (269)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~ 149 (269)
......+..... .....+...+.+.|. +++.++||..
T Consensus 373 ~~~~~~~~L~n~-~~~~eLlaLL~~hPn-Vla~LsGHvH 409 (492)
T TIGR03768 373 GAADANPDLQNA-VSLTGLVTTLQKYPN-LLMWIAGHRH 409 (492)
T ss_pred cccccccccccc-ccHHHHHHHHhcCCC-eEEEEcCCcc
Confidence 000000001111 112246666677765 6689999965
No 229
>PRK10908 cell division protein FtsE; Provisional
Probab=20.87 E-value=2.6e+02 Score=23.24 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=26.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.+.+|.|. +.+|.....++.+.+.++..+ .. .|++.+
T Consensus 158 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~~-tiii~s 194 (222)
T PRK10908 158 VLLADEPT--GNLDDALSEGILRLFEEFNRV-GV-TVLMAT 194 (222)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHC-CC-EEEEEe
Confidence 46778874 899999999999999988643 33 444444
No 230
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=20.64 E-value=2.9e+02 Score=22.62 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=28.4
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 52 RAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 52 ~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
-.+.+|.|. +.+|......+.+.++++.+. . +.|++.+
T Consensus 131 ~illlDEP~--~~LD~~~~~~l~~~l~~~~~~-~-~tiii~s 168 (194)
T cd03213 131 SLLFLDEPT--SGLDSSSALQVMSLLRRLADT-G-RTIICSI 168 (194)
T ss_pred CEEEEeCCC--cCCCHHHHHHHHHHHHHHHhC-C-CEEEEEe
Confidence 356788885 899999999999999988643 3 3455544
No 231
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=20.62 E-value=2.6e+02 Score=23.35 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA 94 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~ 94 (269)
.+.+|.|. +.+|.....++.+.+.++..+.. +.|++.+.
T Consensus 152 illlDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH 190 (230)
T TIGR03410 152 LLLLDEPT--EGIQPSIIKDIGRVIRRLRAEGG-MAILLVEQ 190 (230)
T ss_pred EEEecCCc--ccCCHHHHHHHHHHHHHHHHcCC-cEEEEEeC
Confidence 45678884 89999999999999998865433 34444443
No 232
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.60 E-value=2.6e+02 Score=22.31 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=28.0
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 52 RAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 52 ~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
-.+.+|.|. +.+|.....++.+.+.++.++ . ..+++.+
T Consensus 115 ~illlDEPt--~~LD~~~~~~l~~~l~~~~~~-g-~tiii~t 152 (173)
T cd03230 115 ELLILDEPT--SGLDPESRREFWELLRELKKE-G-KTILLSS 152 (173)
T ss_pred CEEEEeCCc--cCCCHHHHHHHHHHHHHHHHC-C-CEEEEEC
Confidence 346788885 899999999999999988654 3 3444443
No 233
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.49 E-value=2.4e+02 Score=23.66 Aligned_cols=38 Identities=8% Similarity=0.185 Sum_probs=26.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.+.+|.|. +.+|......+.+.+.++..+... .|++++
T Consensus 161 lllLDEP~--~~LD~~~~~~l~~~l~~~~~~~~~-tvii~s 198 (233)
T cd03258 161 VLLCDEAT--SALDPETTQSILALLRDINRELGL-TIVLIT 198 (233)
T ss_pred EEEecCCC--CcCCHHHHHHHHHHHHHHHHHcCC-EEEEEe
Confidence 45678874 889999999998888887553233 444444
No 234
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=20.49 E-value=2.4e+02 Score=24.43 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=22.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcC
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEEN 83 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d 83 (269)
.+.+|.|. |.+|......+.+.+..+..+
T Consensus 154 lllLDEPt--~~LD~~~~~~l~~~L~~~~~~ 182 (257)
T PRK11247 154 LLLLDEPL--GALDALTRIEMQDLIESLWQQ 182 (257)
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHHH
Confidence 45677774 888988888888888877543
No 235
>PRK05665 amidotransferase; Provisional
Probab=20.20 E-value=1.6e+02 Score=25.55 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHccCCCcEEEEEchh
Q 024298 122 FFETLYQFVYLQGTFVKPHVAILDGI 147 (269)
Q Consensus 122 ~~~~~~~l~~~i~~~~kp~Iaav~G~ 147 (269)
+......+++......+|+++.+-|+
T Consensus 76 wi~~l~~~i~~~~~~~~PilGIC~Gh 101 (240)
T PRK05665 76 WIQTLKTYLLKLYERGDKLLGVCFGH 101 (240)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeHHH
Confidence 44555666666667789999777766
No 236
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.18 E-value=2.4e+02 Score=23.70 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=26.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.+.+|.|. +.+|......+.+.+.++..+... .||+.+
T Consensus 165 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~-tii~~t 202 (241)
T cd03256 165 LILADEPV--ASLDPASSRQVMDLLKRINREEGI-TVIVSL 202 (241)
T ss_pred EEEEeCcc--ccCCHHHHHHHHHHHHHHHHhcCC-EEEEEe
Confidence 45677774 899999999999999987654333 344444
No 237
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=20.12 E-value=2.9e+02 Score=22.60 Aligned_cols=39 Identities=8% Similarity=0.180 Sum_probs=28.4
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC
Q 024298 52 RAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA 94 (269)
Q Consensus 52 ~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~ 94 (269)
-.+.+|.|. +.+|.+....+.+.+.++..+ . ..|++.+.
T Consensus 154 ~llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tii~~sh 192 (206)
T TIGR03608 154 PLILADEPT--GSLDPKNRDEVLDLLLELNDE-G-KTIIIVTH 192 (206)
T ss_pred CEEEEeCCc--CCCCHHHHHHHHHHHHHHHhc-C-CEEEEEeC
Confidence 346788885 899999999999999988643 3 34454443
No 238
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=20.04 E-value=2.5e+02 Score=24.09 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=26.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc
Q 024298 53 AAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93 (269)
Q Consensus 53 ~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 93 (269)
.+.+|.|. +.+|.....++.+.+..+..+... .||+.+
T Consensus 172 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~-tii~is 209 (258)
T PRK11701 172 LVFMDEPT--GGLDVSVQARLLDLLRGLVRELGL-AVVIVT 209 (258)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcCc-EEEEEe
Confidence 45677774 899999999999999887653333 344443
Done!