Query 024300
Match_columns 269
No_of_seqs 205 out of 2098
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:33:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02978 pyridoxal kinase 100.0 1.3E-39 2.8E-44 283.4 30.0 267 1-268 1-268 (308)
2 COG0351 ThiD Hydroxymethylpyri 100.0 6.1E-40 1.3E-44 272.1 26.2 237 13-268 2-246 (263)
3 PRK05756 pyridoxamine kinase; 100.0 2E-38 4.3E-43 274.2 26.8 245 14-268 1-256 (286)
4 PRK08176 pdxK pyridoxal-pyrido 100.0 2.3E-38 4.9E-43 272.7 26.9 244 14-268 15-267 (281)
5 KOG2599 Pyridoxal/pyridoxine/p 100.0 1.4E-38 3E-43 259.2 23.0 256 7-268 2-264 (308)
6 COG2240 PdxK Pyridoxal/pyridox 100.0 4.3E-38 9.2E-43 262.2 24.3 246 15-268 1-251 (281)
7 cd01173 pyridoxal_pyridoxamine 100.0 6.8E-36 1.5E-40 254.2 26.8 243 16-268 1-252 (254)
8 TIGR00687 pyridox_kin pyridoxa 100.0 6.5E-36 1.4E-40 258.5 27.0 244 14-268 1-257 (286)
9 PRK12616 pyridoxal kinase; Rev 100.0 1.6E-35 3.4E-40 253.8 25.8 239 13-268 2-250 (270)
10 TIGR00097 HMP-P_kinase phospho 100.0 2E-35 4.3E-40 251.2 25.0 232 17-267 1-240 (254)
11 PRK07105 pyridoxamine kinase; 100.0 2.7E-35 5.9E-40 254.3 25.5 244 12-268 2-256 (284)
12 PTZ00344 pyridoxal kinase; Pro 100.0 4.5E-35 9.7E-40 254.1 26.9 251 12-268 2-259 (296)
13 PRK12412 pyridoxal kinase; Rev 100.0 4.7E-35 1E-39 250.7 26.3 237 14-268 1-247 (268)
14 cd01169 HMPP_kinase 4-amino-5- 100.0 2.2E-34 4.8E-39 243.2 25.6 235 16-268 1-242 (242)
15 PRK06427 bifunctional hydroxy- 100.0 7.8E-34 1.7E-38 243.2 26.1 237 13-268 3-249 (266)
16 PTZ00493 phosphomethylpyrimidi 100.0 1.1E-33 2.5E-38 243.8 25.3 250 13-268 3-286 (321)
17 PF08543 Phos_pyr_kin: Phospho 100.0 3.4E-33 7.4E-38 236.1 22.4 230 24-268 1-235 (246)
18 KOG2598 Phosphomethylpyrimidin 100.0 2.5E-33 5.4E-38 241.6 20.3 254 2-269 11-285 (523)
19 PTZ00347 phosphomethylpyrimidi 100.0 1.4E-32 2.9E-37 254.5 24.3 236 14-268 230-479 (504)
20 PRK12413 phosphomethylpyrimidi 100.0 5.8E-32 1.2E-36 230.0 25.4 234 14-268 3-243 (253)
21 PRK08573 phosphomethylpyrimidi 100.0 8E-32 1.7E-36 245.6 26.3 235 14-267 2-244 (448)
22 PLN02898 HMP-P kinase/thiamin- 100.0 8.6E-32 1.9E-36 249.1 25.9 242 8-268 3-254 (502)
23 PRK14713 multifunctional hydro 100.0 9.7E-32 2.1E-36 249.8 24.2 242 9-268 24-273 (530)
24 PRK09517 multifunctional thiam 100.0 1.5E-31 3.3E-36 256.9 23.7 238 12-268 239-485 (755)
25 COG1105 FruK Fructose-1-phosph 99.9 8.8E-26 1.9E-30 192.1 20.5 225 15-266 43-285 (310)
26 PTZ00292 ribokinase; Provision 99.9 3.3E-23 7.1E-28 182.4 21.0 217 25-267 71-307 (326)
27 cd01171 YXKO-related B.subtili 99.9 4.7E-23 1E-27 175.3 20.2 225 8-266 2-234 (254)
28 cd01174 ribokinase Ribokinase 99.9 6.2E-23 1.3E-27 177.7 20.9 209 25-267 55-283 (292)
29 TIGR03828 pfkB 1-phosphofructo 99.9 1.7E-22 3.7E-27 176.0 23.0 217 25-268 54-285 (304)
30 PRK11142 ribokinase; Provision 99.9 6.8E-23 1.5E-27 178.7 20.5 209 25-267 58-286 (306)
31 cd01166 KdgK 2-keto-3-deoxyglu 99.9 3.7E-23 8E-28 179.2 17.9 218 24-268 49-291 (294)
32 PRK10294 6-phosphofructokinase 99.9 2.9E-22 6.4E-27 175.1 21.8 207 34-267 69-289 (309)
33 PLN02341 pfkB-type carbohydrat 99.9 7.1E-23 1.5E-27 188.0 18.1 219 24-267 137-390 (470)
34 cd01172 RfaE_like RfaE encodes 99.9 1.6E-22 3.5E-27 176.2 19.5 213 25-267 58-291 (304)
35 PTZ00247 adenosine kinase; Pro 99.9 6.8E-23 1.5E-27 181.8 17.4 219 24-268 84-332 (345)
36 PRK09513 fruK 1-phosphofructok 99.9 4.1E-22 8.8E-27 174.5 21.6 216 25-267 58-288 (312)
37 TIGR02198 rfaE_dom_I rfaE bifu 99.9 3.6E-22 7.8E-27 174.9 20.6 214 25-268 66-300 (315)
38 TIGR01231 lacC tagatose-6-phos 99.9 5.2E-22 1.1E-26 173.5 21.4 218 25-267 54-286 (309)
39 cd01164 FruK_PfkB_like 1-phosp 99.9 1.7E-21 3.7E-26 168.7 24.4 216 25-267 55-285 (289)
40 TIGR03168 1-PFK hexose kinase, 99.9 7.4E-22 1.6E-26 172.1 22.0 217 25-268 54-285 (303)
41 PRK13508 tagatose-6-phosphate 99.9 1E-21 2.2E-26 171.7 22.3 217 25-267 55-286 (309)
42 cd01168 adenosine_kinase Adeno 99.9 8.7E-23 1.9E-27 178.7 15.0 212 25-267 74-306 (312)
43 TIGR02152 D_ribokin_bact ribok 99.9 1.3E-21 2.9E-26 169.6 20.8 210 25-267 50-279 (293)
44 PRK09954 putative kinase; Prov 99.9 7.3E-22 1.6E-26 176.3 19.6 209 25-266 112-341 (362)
45 PRK09850 pseudouridine kinase; 99.9 8.1E-22 1.8E-26 172.7 19.4 211 25-267 59-289 (313)
46 PLN02967 kinase 99.9 7.6E-23 1.6E-27 188.8 13.2 223 24-267 261-528 (581)
47 PLN02323 probable fructokinase 99.9 2.7E-21 5.9E-26 170.5 19.5 217 25-268 62-309 (330)
48 TIGR00196 yjeF_cterm yjeF C-te 99.9 2E-21 4.4E-26 166.8 17.5 219 2-257 12-237 (272)
49 cd01167 bac_FRK Fructokinases 99.9 1E-21 2.2E-26 170.3 15.6 160 87-267 121-291 (295)
50 PLN02813 pfkB-type carbohydrat 99.9 1.1E-21 2.5E-26 177.7 15.9 215 25-268 153-389 (426)
51 cd01944 YegV_kinase_like YegV- 99.9 3.7E-21 8.1E-26 166.5 17.9 214 25-268 54-288 (289)
52 PRK09434 aminoimidazole ribosi 99.9 3.8E-21 8.3E-26 167.6 17.6 212 25-267 47-290 (304)
53 PLN02548 adenosine kinase 99.9 6.9E-21 1.5E-25 168.1 18.9 218 25-268 74-321 (332)
54 PLN02543 pfkB-type carbohydrat 99.9 1.9E-21 4.2E-26 177.7 14.7 244 3-267 164-470 (496)
55 COG0524 RbsK Sugar kinases, ri 99.9 7.8E-21 1.7E-25 166.2 15.9 212 25-267 56-290 (311)
56 cd01941 YeiC_kinase_like YeiC- 99.9 4.8E-20 1E-24 159.3 20.7 212 24-266 53-287 (288)
57 PRK15074 inosine/guanosine kin 99.9 7.7E-21 1.7E-25 171.7 15.5 220 24-268 111-412 (434)
58 cd01940 Fructoselysine_kinase_ 99.9 1.5E-20 3.2E-25 160.6 16.6 201 25-267 41-260 (264)
59 PF00294 PfkB: pfkB family car 99.9 9E-21 2E-25 164.7 14.8 216 25-268 55-292 (301)
60 cd01943 MAK32 MAK32 kinase. M 99.9 3.3E-20 7.2E-25 163.4 18.2 216 25-267 50-301 (328)
61 PLN02379 pfkB-type carbohydrat 99.9 3.2E-20 6.8E-25 165.6 17.2 212 24-268 105-339 (367)
62 PRK11316 bifunctional heptose 99.8 1.1E-19 2.3E-24 167.9 20.9 207 25-267 69-297 (473)
63 cd01946 ribokinase_group_C Rib 99.8 2.3E-19 5E-24 154.4 17.9 209 23-267 41-272 (277)
64 cd01945 ribokinase_group_B Rib 99.8 2.4E-19 5.2E-24 154.7 17.5 202 25-267 55-275 (284)
65 KOG2855 Ribokinase [Carbohydra 99.8 6.8E-20 1.5E-24 156.3 12.0 241 1-267 36-307 (330)
66 cd01942 ribokinase_group_A Rib 99.8 4.2E-19 9E-24 152.8 15.8 197 25-267 55-275 (279)
67 PRK09813 fructoselysine 6-kina 99.8 4.1E-18 8.9E-23 145.4 18.5 194 24-267 41-256 (260)
68 cd01939 Ketohexokinase Ketohex 99.8 3.5E-18 7.7E-23 148.0 16.0 205 25-267 55-286 (290)
69 cd00287 ribokinase_pfkB_like r 99.8 7.3E-18 1.6E-22 137.4 15.9 138 87-244 58-196 (196)
70 cd01947 Guanosine_kinase_like 99.8 1.4E-18 3E-23 148.6 12.0 128 105-268 134-262 (265)
71 cd01170 THZ_kinase 4-methyl-5- 99.8 1.3E-16 2.8E-21 134.4 19.5 156 90-267 55-222 (242)
72 KOG2854 Possible pfkB family c 99.7 2.9E-17 6.2E-22 138.9 14.2 219 24-268 84-332 (343)
73 cd01937 ribokinase_group_D Rib 99.7 2.8E-17 6E-22 139.7 14.0 125 118-266 129-254 (254)
74 TIGR00694 thiM hydroxyethylthi 99.7 4.3E-16 9.4E-21 131.8 18.2 159 87-267 52-221 (249)
75 COG2870 RfaE ADP-heptose synth 99.7 1.7E-15 3.7E-20 131.1 16.5 131 104-263 160-292 (467)
76 PRK09355 hydroxyethylthiazole 99.7 1.6E-14 3.5E-19 123.2 20.1 157 88-264 58-223 (263)
77 PLN02630 pfkB-type carbohydrat 99.7 2.2E-15 4.8E-20 132.6 14.4 134 101-267 134-274 (335)
78 PRK10565 putative carbohydrate 99.6 1.1E-13 2.4E-18 128.0 20.0 220 2-259 242-467 (508)
79 COG0063 Predicted sugar kinase 99.4 3.8E-11 8.3E-16 102.5 18.7 221 3-257 21-250 (284)
80 PF01256 Carb_kinase: Carbohyd 99.4 7.1E-12 1.5E-16 105.3 12.1 209 17-260 1-215 (242)
81 PF02110 HK: Hydroxyethylthiaz 99.2 5E-10 1.1E-14 93.5 15.4 150 90-261 55-215 (246)
82 COG2145 ThiM Hydroxyethylthiaz 99.2 1.5E-09 3.4E-14 89.7 16.7 165 68-260 45-221 (265)
83 KOG3974 Predicted sugar kinase 99.2 1.5E-09 3.3E-14 89.3 15.4 215 2-244 18-241 (306)
84 KOG2947 Carbohydrate kinase [C 99.0 5.7E-09 1.2E-13 85.1 12.8 198 34-265 73-293 (308)
85 KOG3009 Predicted carbohydrate 98.4 4.5E-06 9.8E-11 74.2 12.6 211 25-266 375-599 (614)
86 PRK14039 ADP-dependent glucoki 93.3 1.5 3.2E-05 40.3 11.5 82 104-191 239-329 (453)
87 PRK03979 ADP-specific phosphof 92.4 3.1 6.8E-05 38.4 12.2 112 70-191 210-344 (463)
88 COG0541 Ffh Signal recognition 90.9 6.3 0.00014 36.0 12.2 151 9-193 94-248 (451)
89 TIGR02045 P_fruct_ADP ADP-spec 90.1 6.9 0.00015 36.0 12.0 111 70-191 197-330 (446)
90 PRK10076 pyruvate formate lyas 89.7 10 0.00023 31.2 12.2 85 88-188 40-130 (213)
91 PRK14038 ADP-dependent glucoki 89.3 5.4 0.00012 36.7 10.7 98 87-191 225-340 (453)
92 PF02310 B12-binding: B12 bind 78.7 22 0.00049 25.7 8.5 74 28-123 14-87 (121)
93 PF04587 ADP_PFK_GK: ADP-speci 78.3 8.9 0.00019 35.4 7.3 58 101-165 235-292 (444)
94 TIGR02026 BchE magnesium-proto 76.6 28 0.0006 32.7 10.2 99 34-161 28-127 (497)
95 COG1058 CinA Predicted nucleot 71.1 15 0.00033 31.2 6.3 87 17-126 6-96 (255)
96 TIGR00334 5S_RNA_mat_M5 ribonu 69.5 37 0.00081 27.0 7.8 72 101-182 35-109 (174)
97 COG0552 FtsY Signal recognitio 67.7 82 0.0018 28.0 10.2 153 12-193 136-293 (340)
98 cd02070 corrinoid_protein_B12- 67.5 49 0.0011 26.8 8.6 116 14-164 82-199 (201)
99 cd04725 OMP_decarboxylase_like 66.8 51 0.0011 27.1 8.6 36 87-127 24-59 (216)
100 PLN02891 IMP cyclohydrolase 56.9 53 0.0011 31.0 7.5 116 5-125 12-168 (547)
101 cd02069 methionine_synthase_B1 56.2 84 0.0018 25.8 8.0 123 13-164 87-209 (213)
102 TIGR03278 methan_mark_10 putat 55.0 1.7E+02 0.0037 26.8 12.0 112 63-183 50-165 (404)
103 TIGR03419 NifU_clost FeS clust 52.6 28 0.0006 25.9 4.2 42 227-269 51-95 (121)
104 PRK00964 tetrahydromethanopter 51.4 84 0.0018 26.1 7.0 84 16-117 73-157 (225)
105 COG1180 PflA Pyruvate-formate 51.2 1.5E+02 0.0033 25.1 10.5 84 87-186 84-173 (260)
106 PRK10867 signal recognition pa 51.0 2.1E+02 0.0045 26.5 12.8 150 11-193 96-249 (433)
107 PRK04165 acetyl-CoA decarbonyl 49.6 2.2E+02 0.0048 26.5 11.7 117 66-194 101-234 (450)
108 cd01938 ADPGK_ADPPFK ADP-depen 49.5 1.1E+02 0.0024 28.3 8.4 74 86-165 205-286 (445)
109 PF02679 ComA: (2R)-phospho-3- 46.5 46 0.00099 28.1 5.0 61 57-123 12-73 (244)
110 COG4381 Mu-like prophage prote 46.1 20 0.00042 26.7 2.4 35 232-267 50-88 (135)
111 COG1099 Predicted metal-depend 45.6 1.8E+02 0.0039 24.4 10.7 121 67-193 77-210 (254)
112 PF11965 DUF3479: Domain of un 45.6 79 0.0017 24.9 5.9 50 68-123 44-93 (164)
113 TIGR01769 GGGP geranylgeranylg 44.6 1.1E+02 0.0024 25.1 6.9 51 70-126 11-62 (205)
114 TIGR01111 mtrA N5-methyltetrah 44.6 1.5E+02 0.0033 24.6 7.5 84 16-117 73-157 (238)
115 cd02067 B12-binding B12 bindin 44.5 89 0.0019 22.6 5.9 36 87-123 51-87 (119)
116 COG3033 TnaA Tryptophanase [Am 44.5 80 0.0017 28.5 6.2 88 66-156 168-265 (471)
117 PRK03659 glutathione-regulated 42.8 2E+02 0.0044 27.7 9.5 116 26-165 408-527 (601)
118 KOG3361 Iron binding protein i 42.7 35 0.00075 25.8 3.3 39 227-266 85-124 (157)
119 TIGR01768 GGGP-family geranylg 41.7 89 0.0019 26.0 5.9 36 87-125 28-63 (223)
120 COG1646 Predicted phosphate-bi 41.2 91 0.002 26.1 5.8 39 87-127 42-80 (240)
121 KOG4184 Predicted sugar kinase 40.0 1.1E+02 0.0023 27.5 6.3 86 71-165 226-317 (478)
122 TIGR03586 PseI pseudaminic aci 40.0 1.8E+02 0.0039 25.7 7.9 78 102-193 77-168 (327)
123 TIGR02370 pyl_corrinoid methyl 39.8 2E+02 0.0044 23.2 8.4 88 14-123 84-173 (197)
124 PF03102 NeuB: NeuB family; I 39.4 1.6E+02 0.0035 24.8 7.2 78 101-192 55-146 (241)
125 PTZ00413 lipoate synthase; Pro 39.3 90 0.002 28.3 5.9 30 86-120 297-326 (398)
126 PF11469 Ribonucleas_3_2: Ribo 39.0 36 0.00078 24.5 2.8 31 226-257 53-84 (120)
127 COG1830 FbaB DhnA-type fructos 39.0 2.3E+02 0.0049 24.3 8.0 37 90-128 118-154 (265)
128 COG0320 LipA Lipoate synthase 38.9 2.5E+02 0.0054 24.4 8.1 43 74-121 201-245 (306)
129 cd01421 IMPCH Inosine monophos 38.2 91 0.002 25.2 5.3 18 107-124 127-144 (187)
130 PF04208 MtrA: Tetrahydrometha 38.2 1.9E+02 0.0042 23.0 6.9 82 17-116 70-152 (176)
131 PRK08508 biotin synthase; Prov 37.7 2.6E+02 0.0057 23.9 12.5 110 67-186 40-151 (279)
132 TIGR02045 P_fruct_ADP ADP-spec 37.2 20 0.00043 33.1 1.6 20 226-245 422-442 (446)
133 TIGR02494 PFLE_PFLC glycyl-rad 36.6 2.7E+02 0.0059 23.8 11.6 75 100-189 139-218 (295)
134 COG4981 Enoyl reductase domain 36.4 1.5E+02 0.0033 28.2 7.1 78 30-127 109-186 (717)
135 PLN02623 pyruvate kinase 35.9 3.9E+02 0.0084 25.8 9.8 84 66-166 275-358 (581)
136 TIGR03849 arch_ComA phosphosul 35.7 76 0.0016 26.7 4.7 51 67-123 9-60 (237)
137 TIGR02826 RNR_activ_nrdG3 anae 35.6 2E+02 0.0043 22.1 6.7 76 65-160 44-120 (147)
138 PRK03979 ADP-specific phosphof 35.3 24 0.00051 32.8 1.8 19 226-244 436-455 (463)
139 PF00215 OMPdecase: Orotidine 35.2 2.5E+02 0.0055 23.0 8.6 54 69-128 12-66 (226)
140 PRK06354 pyruvate kinase; Prov 35.0 4.2E+02 0.009 25.7 10.0 84 66-165 175-258 (590)
141 KOG1615 Phosphoserine phosphat 34.9 30 0.00066 28.2 2.1 47 148-194 66-113 (227)
142 PF13460 NAD_binding_10: NADH( 34.1 1.2E+02 0.0025 23.5 5.5 85 26-121 7-93 (183)
143 KOG0780 Signal recognition par 33.8 3.8E+02 0.0082 24.6 12.4 158 3-193 89-249 (483)
144 COG0269 SgbH 3-hexulose-6-phos 33.2 2.8E+02 0.0061 23.0 7.9 83 99-194 90-172 (217)
145 TIGR00355 purH phosphoribosyla 33.1 96 0.0021 29.2 5.3 51 76-126 81-146 (511)
146 PF01592 NifU_N: NifU-like N t 32.8 52 0.0011 24.5 3.0 40 228-268 56-98 (126)
147 PF10686 DUF2493: Protein of u 32.6 1E+02 0.0022 20.5 4.1 32 167-199 13-45 (71)
148 cd04890 ACT_AK-like_1 ACT doma 32.3 61 0.0013 20.2 3.0 34 17-50 2-36 (62)
149 cd02068 radical_SAM_B12_BD B12 32.2 1.9E+02 0.0041 21.1 6.1 62 87-160 40-101 (127)
150 PF14606 Lipase_GDSL_3: GDSL-l 31.6 1.3E+02 0.0029 24.0 5.3 52 70-127 49-104 (178)
151 COG3589 Uncharacterized conser 31.6 2.9E+02 0.0062 24.7 7.6 76 87-165 30-112 (360)
152 smart00642 Aamy Alpha-amylase 31.5 57 0.0012 25.6 3.2 25 101-127 69-93 (166)
153 TIGR03569 NeuB_NnaB N-acetylne 31.1 3E+02 0.0064 24.4 7.9 72 102-187 76-161 (329)
154 PRK09206 pyruvate kinase; Prov 30.7 4.6E+02 0.0099 24.6 10.0 84 66-165 169-252 (470)
155 cd00288 Pyruvate_Kinase Pyruva 30.5 4.6E+02 0.01 24.6 10.3 84 66-166 171-254 (480)
156 KOG0174 20S proteasome, regula 30.1 29 0.00062 28.1 1.2 40 228-267 146-185 (224)
157 PRK15447 putative protease; Pr 28.7 3.9E+02 0.0085 23.2 10.5 86 67-164 12-104 (301)
158 PF05762 VWA_CoxE: VWA domain 28.6 3.3E+02 0.0072 22.3 7.7 80 71-155 135-215 (222)
159 PRK00881 purH bifunctional pho 28.6 1.6E+02 0.0035 27.8 6.0 53 74-126 84-151 (513)
160 COG0138 PurH AICAR transformyl 27.9 1.3E+02 0.0029 28.1 5.2 85 36-125 37-148 (515)
161 PRK11572 copper homeostasis pr 27.9 1.2E+02 0.0026 25.7 4.6 53 67-123 67-121 (248)
162 COG1313 PflX Uncharacterized F 27.8 4.2E+02 0.0091 23.3 8.4 88 64-167 146-238 (335)
163 PRK05198 2-dehydro-3-deoxyphos 27.6 3.9E+02 0.0085 22.9 8.7 77 104-194 69-160 (264)
164 PRK03562 glutathione-regulated 27.6 4.4E+02 0.0095 25.6 9.1 115 26-164 408-526 (621)
165 PF13986 DUF4224: Domain of un 26.6 1.3E+02 0.0028 18.2 3.5 32 154-190 2-33 (47)
166 COG0111 SerA Phosphoglycerate 26.6 2E+02 0.0044 25.3 6.1 68 91-165 144-216 (324)
167 PF00128 Alpha-amylase: Alpha 26.0 78 0.0017 26.8 3.4 25 101-127 51-75 (316)
168 PF03932 CutC: CutC family; I 25.9 1.2E+02 0.0025 24.9 4.1 54 67-124 66-121 (201)
169 PRK03673 hypothetical protein; 25.9 1.9E+02 0.0042 26.3 5.9 79 25-126 14-96 (396)
170 PRK13305 sgbH 3-keto-L-gulonat 25.3 1.7E+02 0.0037 24.2 5.1 37 87-126 29-65 (218)
171 cd01409 SIRT4 SIRT4: Eukaryoti 25.3 1.1E+02 0.0023 26.1 4.0 55 63-126 186-241 (260)
172 PF01136 Peptidase_U32: Peptid 24.8 3.7E+02 0.0081 21.9 7.2 56 71-144 3-58 (233)
173 PRK12595 bifunctional 3-deoxy- 24.6 3.5E+02 0.0077 24.3 7.3 77 102-193 169-260 (360)
174 cd01410 SIRT7 SIRT7: Eukaryoti 24.2 1.7E+02 0.0036 23.9 4.8 56 63-127 137-193 (206)
175 TIGR01369 CPSaseII_lrg carbamo 24.0 4.5E+02 0.0097 27.4 8.8 79 11-95 3-90 (1050)
176 PRK05826 pyruvate kinase; Prov 24.0 6E+02 0.013 23.8 9.5 85 66-166 170-254 (465)
177 COG4063 MtrA Tetrahydromethano 23.7 4E+02 0.0087 21.6 7.0 83 16-116 72-155 (238)
178 TIGR02351 thiH thiazole biosyn 23.1 5.5E+02 0.012 23.0 11.9 109 66-187 102-216 (366)
179 COG1570 XseA Exonuclease VII, 23.0 5.5E+02 0.012 23.8 8.2 70 91-163 137-212 (440)
180 COG3876 Uncharacterized protei 22.9 4.5E+02 0.0097 23.3 7.1 27 99-127 140-168 (409)
181 TIGR01362 KDO8P_synth 3-deoxy- 22.7 4.9E+02 0.011 22.2 8.6 77 104-194 61-152 (258)
182 TIGR02491 NrdG anaerobic ribon 22.0 3.7E+02 0.008 20.6 6.5 58 64-124 43-102 (154)
183 PF09673 TrbC_Ftype: Type-F co 21.9 3.2E+02 0.0069 19.8 6.5 58 66-127 7-64 (113)
184 TIGR01740 pyrF orotidine 5'-ph 21.9 4.4E+02 0.0095 21.4 8.2 36 87-127 24-59 (213)
185 TIGR02127 pyrF_sub2 orotidine 21.6 5.1E+02 0.011 22.1 9.4 63 87-157 54-122 (261)
186 PF02571 CbiJ: Precorrin-6x re 21.4 1.1E+02 0.0023 26.0 3.2 23 172-194 116-138 (249)
187 COG1703 ArgK Putative periplas 21.2 5.8E+02 0.012 22.5 8.3 43 9-51 45-88 (323)
188 PRK00125 pyrF orotidine 5'-pho 21.1 5.4E+02 0.012 22.2 7.5 63 87-157 54-123 (278)
189 PF04412 DUF521: Protein of un 20.9 3.2E+02 0.0069 25.0 6.3 57 65-123 268-326 (400)
190 PRK04169 geranylgeranylglycery 20.5 2.2E+02 0.0047 23.9 4.8 37 87-126 33-69 (232)
191 cd06364 PBP1_CaSR Ligand-bindi 20.4 4.1E+02 0.0089 25.0 7.2 80 15-114 188-267 (510)
192 PRK14039 ADP-dependent glucoki 20.3 62 0.0013 30.0 1.7 20 226-245 429-449 (453)
193 PRK11325 scaffold protein; Pro 20.3 1.4E+02 0.003 22.3 3.4 38 227-265 57-97 (127)
194 TIGR00200 cinA_nterm competenc 20.1 3.3E+02 0.0072 25.0 6.3 68 34-124 25-93 (413)
195 TIGR03649 ergot_EASG ergot alk 20.1 5.2E+02 0.011 21.6 7.3 98 17-122 2-102 (285)
196 PF12404 DUF3663: Peptidase ; 20.0 1.7E+02 0.0037 19.9 3.3 23 171-193 37-59 (77)
No 1
>PLN02978 pyridoxal kinase
Probab=100.00 E-value=1.3e-39 Score=283.36 Aligned_cols=267 Identities=83% Similarity=1.276 Sum_probs=229.1
Q ss_pred CCCCccccCCCCCCCcEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHH
Q 024300 1 MAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLE 80 (269)
Q Consensus 1 ~~~~~~~~~~~~~~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (269)
|+||.+++...+++++||+|+++|.+|.+|+.+...+|+.+|+++..++|+.+++||||..+.+..++.++++.++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~vl~iqs~~~~g~~g~~~a~~pl~~~g~~v~~lpTv~lSnhtgy~~~~~~~~~~~~~~~~l~~~~ 80 (308)
T PLN02978 1 MAPPVLSLALPSSTGRVLSIQSHTVHGYVGNKSAVFPLQLLGFDVDPINSVQFSNHTGYPTFKGQVLDGEQLWALIEGLE 80 (308)
T ss_pred CCcchhccccCCCCCcEEEEeCeeeecCCCceehHhhHHHcCCeeeeeccEeecCCCCCCCceeeeCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999997777779999999999999999999999888888999889999999999
Q ss_pred hCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHH
Q 024300 81 ANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA 160 (269)
Q Consensus 81 ~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~ 160 (269)
..+++++++|++|++++.+..+.+.++++.+++.++++++|+||++++.|+.|..++..+.+++.+++++|+++||..|+
T Consensus 81 ~~~~~~~~ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea 160 (308)
T PLN02978 81 ANGLLFYTHLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEA 160 (308)
T ss_pred HcCCcccCEEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHH
Confidence 88777799999999999999999999999998754578899999999877788777787888755999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccCCCCCCchHHHHHHHH
Q 024300 161 EQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLL 240 (269)
Q Consensus 161 ~~l~g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~a~~~ 240 (269)
+.|+|.++.+.+++.++++.+++.|++.|+||+++.+|.+++.......++..++.+.+..++++..++|+||+|+|+++
T Consensus 161 ~~L~g~~~~~~~~~~~a~~~l~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~GtGD~fsA~la 240 (308)
T PLN02978 161 EQLTGIRIVTEEDAREACAILHAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKIPAYFTGTGDLMAALLL 240 (308)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCCCCCCCCchHHHHHHHH
Confidence 99999877777788899999999999999999975556554332111000000145567777777667999999999999
Q ss_pred HhhccCC-CCHHHHHHHHHHHHHHHhhcC
Q 024300 241 GWSNKYR-DNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 241 ~~l~~~g-~~~~~a~~~A~~~~~~~l~~~ 268 (269)
+.+++ | .++++|+++|..++.++|+++
T Consensus 241 a~l~~-g~~~l~~A~~~A~~~v~~~i~~t 268 (308)
T PLN02978 241 GWSHK-YPDNLDKAAELAVSSLQAVLRRT 268 (308)
T ss_pred HHHhc-CCcCHHHHHHHHHHHHHHHHHHH
Confidence 99998 8 799999999999999999864
No 2
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=100.00 E-value=6.1e-40 Score=272.08 Aligned_cols=237 Identities=26% Similarity=0.366 Sum_probs=204.4
Q ss_pred CCCcEEEEecccccCccccccchHHHHhcC-CceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEE
Q 024300 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLG-YDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (269)
Q Consensus 13 ~~~~vl~i~g~~~~g~~G~~a~~~~l~~~G-v~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (269)
.++++|+|+|+|..|++|+++++++++++| +.++.++.+++|++.|+..+ .+++++.++++++.+.+.. .+++++
T Consensus 2 ~~~~~LtIAGsD~sGGAGIqADLKTf~a~gvyg~saITaltaQNt~gV~~v--~~v~~~~v~~Ql~av~~D~--~v~avK 77 (263)
T COG0351 2 KLPVVLTIAGSDSSGGAGIQADLKTFQALGVYGMSAITALTAQNTLGVHGV--HPVPPEFVEAQLDAVFSDI--PVDAVK 77 (263)
T ss_pred CCceEEEEeccCCCccHHHHHHHHHHHhcCCccceEEEEEEEeecCceeeE--EeCCHHHHHHHHHHHhhcC--CCCEEE
Confidence 468999999999999999999999999999 79999999999999886665 6788888888887765532 478999
Q ss_pred EcccCChhhHHHHHHHHHHHHhcCCC-ceEEEcccccc-CCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCC-CC
Q 024300 92 TGYIGSVSFLNTILQVVEKLRSINPN-LIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF-RI 168 (269)
Q Consensus 92 ~G~l~~~~~~~~i~~~l~~~k~~~~~-~~vv~Dp~~~~-~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~-~~ 168 (269)
+||+++.+..+.+.+.+++. + .++|+||++.. +|..+..++..+.++++++|++++++||..|++.|+|. .+
T Consensus 78 tGML~~~eiie~va~~l~~~-----~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i 152 (263)
T COG0351 78 TGMLGSAEIIEVVAEKLKKY-----GIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLPKI 152 (263)
T ss_pred ECCcCCHHHHHHHHHHHHhc-----CCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCcc
Confidence 99999988888777666555 4 67999999984 56677889999999988999999999999999999995 88
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEeeecCC---cEEEEeeeccCCCCCCceEEEEccccCC-CCCCchHHHHHHHHHhhc
Q 024300 169 GSEADGREACKILHAAGPAKVVITSINIDG---NLFLIGSHQKEKGQSPEQFKIVIPKIPA-YFTGTGDLMTALLLGWSN 244 (269)
Q Consensus 169 ~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dt~GaGDaf~a~~~~~l~ 244 (269)
.+.++++++++.++++|+++|+||+|+..+ .+++++ +..+.++.|+++. +++|+||+|++++++.|+
T Consensus 153 ~~~~d~~~a~~~i~~~g~~~VliKGGH~~~~~~D~l~~~---------~~~~~f~~~ri~t~~tHGTGCTlSaAIaa~LA 223 (263)
T COG0351 153 KTEEDMKEAAKLLHELGAKAVLIKGGHLEGEAVDVLYDG---------GSFYTFEAPRIPTKNTHGTGCTLSAAIAANLA 223 (263)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCCCCCCCceeEEEcC---------CceEEEeccccCCCCCCCccHHHHHHHHHHHH
Confidence 899999999999999999999999998765 122221 2466788899885 689999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 245 KYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 245 ~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
+ |.++++|++.|..|+.++|++.
T Consensus 224 ~-G~~l~~AV~~Ak~fv~~AI~~~ 246 (263)
T COG0351 224 K-GLSLEEAVKKAKEFVTRAIRDS 246 (263)
T ss_pred c-CCCHHHHHHHHHHHHHHHHhhh
Confidence 9 9999999999999999999853
No 3
>PRK05756 pyridoxamine kinase; Validated
Probab=100.00 E-value=2e-38 Score=274.19 Aligned_cols=245 Identities=36% Similarity=0.577 Sum_probs=210.8
Q ss_pred CCcEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCc-cccEEEE
Q 024300 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL-YYTHLLT 92 (269)
Q Consensus 14 ~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~ 92 (269)
|++||+|++++++|++|+.+++.+|+.+|+++..++|+..++++++..+.|..++.++++.+++++++.+++ .++++++
T Consensus 1 ~~~il~i~~~~~~G~~g~~~~~~~l~~~g~~~~~~~T~~~s~~t~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 80 (286)
T PRK05756 1 MKNILSIQSHVVYGHVGNSAAVFPMQRLGVNVWPLNTVQFSNHTGYGKWTGCVMPPSHLTEIVQGIADIGWLGECDAVLS 80 (286)
T ss_pred CCcEEEEeceeecccccchhHHHHHHHcCCcceeeceEeecCCCCCCCccCeeCCHHHHHHHHHHHHhcCccccCCEEEE
Confidence 579999999999999999999999999999999999999889999877778889988999999998765433 3789999
Q ss_pred cccCChhhHHHHHHHHHHHHhcCCCceEEEcccccc-CCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCH
Q 024300 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (269)
Q Consensus 93 G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~-~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~ 171 (269)
|++++....+.+.++++++++..+++.+++||++++ .+..|..++..+.+++.+++++|+++||..|++.|+|.+..+.
T Consensus 81 G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~L~g~~~~~~ 160 (286)
T PRK05756 81 GYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFELEWLSGRPVETL 160 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHHHHHhCCCcCCH
Confidence 999999999999999999987644577999999997 4446777788887877799999999999999999999887778
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeeecC-------CcEEEEeeeccCCCCCCceEEEEccccCC--CCCCchHHHHHHHHHh
Q 024300 172 ADGREACKILHAAGPAKVVITSINID-------GNLFLIGSHQKEKGQSPEQFKIVIPKIPA--YFTGTGDLMTALLLGW 242 (269)
Q Consensus 172 ~~~~~a~~~l~~~g~~~Vvvt~g~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--dt~GaGDaf~a~~~~~ 242 (269)
+++.++++.|+++|++.|+||+|+.. |.+++.. ++.++++.++++. +++||||+|+|+|+++
T Consensus 161 ~~~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~---------~~~~~~~~~~~~~~v~~~GaGD~f~a~~~a~ 231 (286)
T PRK05756 161 EDAVAAARALIARGPKIVLVTSLARAGYPADRFEMLLVTA---------DGAWHISRPLVDFMRQPVGVGDLTSALFLAR 231 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEEEC---------CceEEEecCccCCCCCCCChHHHHHHHHHHH
Confidence 88899999999999999999998421 2444432 2455566666665 9999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 243 SNKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 243 l~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
|++ |+++++|+++|+++++++|+++
T Consensus 232 l~~-g~~~~~al~~A~~~~~~~i~~~ 256 (286)
T PRK05756 232 LLQ-GGSLEEALEHTTAAVYEVMART 256 (286)
T ss_pred Hhc-CCCHHHHHHHHHHHHHHHHHHH
Confidence 998 9999999999999999999863
No 4
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=100.00 E-value=2.3e-38 Score=272.73 Aligned_cols=244 Identities=31% Similarity=0.420 Sum_probs=209.7
Q ss_pred CCcEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCc-cccEEEE
Q 024300 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL-YYTHLLT 92 (269)
Q Consensus 14 ~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~ 92 (269)
+..||+|+++..+|++|+.+++..|+.+|++++.++|+..++|+||..+.+..++.+.+.++++.+.+...+ .+|+|++
T Consensus 15 ~~~vl~i~~~~~~G~v~~~~a~~~l~~~G~~v~~lpTv~~s~~~~y~~~~~~~~~~~~i~~~l~~~~~~~~l~~~d~i~~ 94 (281)
T PRK08176 15 QADIVAVQSQVVYGSVGNSIAVPAIKANGLRVFAVPTVLLSNTPHYPTFYGGAIPDEWFSGYLRALQERDALRQLRAVTT 94 (281)
T ss_pred cceEEEEeceeeecccccHHHHHHHHHcCCcccccceEeecCCCCCCCcCCeeCCHHHHHHHHHHHHhcCccccCCEEEE
Confidence 677999999999999999999999999999999999999999999887777778889999999999876533 6899999
Q ss_pred cccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCC-ccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCH
Q 024300 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (269)
Q Consensus 93 G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~-~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~ 171 (269)
|++++.+..+.+.++++..+..+++.++|+||++++.+. .|.+++..+.+++.+++++|+++||..|++.|+|.++.+.
T Consensus 95 G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~~~~ 174 (281)
T PRK08176 95 GYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELEILTGKPCRTL 174 (281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHHHHhCCCCCCH
Confidence 999999999999999998876445789999999997553 7777777777875589999999999999999999887777
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeeecCC-------cEEEEeeeccCCCCCCceEEEEccccCCCCCCchHHHHHHHHHhhc
Q 024300 172 ADGREACKILHAAGPAKVVITSINIDG-------NLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWSN 244 (269)
Q Consensus 172 ~~~~~a~~~l~~~g~~~Vvvt~g~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~a~~~~~l~ 244 (269)
+++.++++.|+++|++.|+||+|+ .| .+++.+ ++.+..+.+...++++||||+|+|+|+++++
T Consensus 175 ~~~~~~~~~l~~~g~~~VvIT~g~-~g~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~GaGD~faa~~~a~l~ 244 (281)
T PRK08176 175 DSAIAAAKSLLSDTLKWVVITSAA-GNEENQEMQVVVVTA---------DSVNVISHPRVDTDLKGTGDLFCAELVSGLL 244 (281)
T ss_pred HHHHHHHHHHHhcCCCEEEEeecc-CCCCCCcEEEEEEeC---------CceEEEecCccCCCCCChhHHHHHHHHHHHh
Confidence 888899999999999999999984 54 244432 1333444555557999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 245 KYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 245 ~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
+ |+++++|+++|+.+++++|+.+
T Consensus 245 ~-g~~l~~Av~~A~~~v~~~i~~t 267 (281)
T PRK08176 245 K-GKALTDAAHRAGLRVLEVMRYT 267 (281)
T ss_pred c-CCCHHHHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999999764
No 5
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.4e-38 Score=259.19 Aligned_cols=256 Identities=57% Similarity=0.898 Sum_probs=230.5
Q ss_pred ccCCCCCCCcEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCcc
Q 024300 7 SLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLY 86 (269)
Q Consensus 7 ~~~~~~~~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (269)
+++...+++|||+|++|...|.+|+.++-.+|+-.|.+++.+.++++++|+||..+.|+.++++++.++.+.+...+...
T Consensus 2 ~~~~~~~~kRVLSIQShVvhGYVGNkaAtFPLQllGwdVD~insVqFSNHtGY~~~kG~~~~~~eL~dL~egl~~nn~~~ 81 (308)
T KOG2599|consen 2 AEATMETTKRVLSIQSHVVHGYVGNKAATFPLQLLGWDVDVINSVQFSNHTGYAHVKGQVLNEEELEDLYEGLLLNNLNK 81 (308)
T ss_pred CcccccCCccEEEEeeeeeeeeccccccccchhhhccccccccceeeccccCCccccccccCHHHHHHHHHHHhhccccc
Confidence 46677899999999999999999999999999999999999999999999999999999999999999999998888777
Q ss_pred ccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCC
Q 024300 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (269)
Q Consensus 87 ~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~ 166 (269)
+++++.|++++....+.+.++++++|+.+|+...++||++.++|++|.+++.+..+++.+.+.+|+++||+.|++.|+|.
T Consensus 82 Y~~vLTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~EiLtg~ 161 (308)
T KOG2599|consen 82 YDAVLTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEILTGM 161 (308)
T ss_pred cceeeeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999996677899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEeeecC---C-cEEEEeeeccCCCCCCceEEEEccccCCCCCCchHHHHHHHHHh
Q 024300 167 RIGSEADGREACKILHAAGPAKVVITSINID---G-NLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGW 242 (269)
Q Consensus 167 ~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~---g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~a~~~~~ 242 (269)
++.+.++.+++++.|+++|++.||||..... | .+++-+.+. + .+.+.+..|+++.-.+|+||.|+|.+++.
T Consensus 162 ~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~---~--~~~f~~~ipki~~~FtGTGDLfsaLLla~ 236 (308)
T KOG2599|consen 162 EIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSC---G--SERFRYLIPKIDGVFTGTGDLFSALLLAW 236 (308)
T ss_pred eeccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEecc---C--CceEEEEecccceEEecccHHHHHHHHHH
Confidence 9999999999999999999999999976322 4 355555432 1 35677777777777899999999999999
Q ss_pred hccCC---CCHHHHHHHHHHHHHHHhhcC
Q 024300 243 SNKYR---DNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 243 l~~~g---~~~~~a~~~A~~~~~~~l~~~ 268 (269)
+.+ - .++..++..+...+..+||+|
T Consensus 237 ~~~-~~~~~~l~~a~e~~ls~~~~viqkT 264 (308)
T KOG2599|consen 237 LHE-SPDNDDLSKAVEQVLSSVQAVIQKT 264 (308)
T ss_pred Hhc-CCCcchHHHHHHHHHHHHHHHHHHH
Confidence 987 4 678999999999999999875
No 6
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=100.00 E-value=4.3e-38 Score=262.23 Aligned_cols=246 Identities=43% Similarity=0.684 Sum_probs=218.3
Q ss_pred CcEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCcc-ccEEEEc
Q 024300 15 GRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLY-YTHLLTG 93 (269)
Q Consensus 15 ~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~G 93 (269)
++||+|++++.+|.+|+.+++..|+.+|+++..++|+++++|+|+....|...+.+++.+++++|.+.+++. +|+|++|
T Consensus 1 k~vlaIqShVv~G~vGn~AA~f~lq~~G~~V~~vpTV~fSnHtgyg~~~g~v~~~e~l~~~l~~l~~~~~~~~~davltG 80 (281)
T COG2240 1 KRILAIQSHVVYGSVGNSAAIFPLQRLGLDVWAVPTVQFSNHTGYGKWTGIVMPPEQLADLLNGLEAIDKLGECDAVLTG 80 (281)
T ss_pred CcEEEEeeeEeecccccHhHHHHHHHcCCceeeeceEEecCCCCCCCCCCcCCCHHHHHHHHHHHHhcccccccCEEEEc
Confidence 689999999999999999999999999999999999999999999887788888999999999999854444 9999999
Q ss_pred ccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCHHH
Q 024300 94 YIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEAD 173 (269)
Q Consensus 94 ~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~~~ 173 (269)
|+++.++.+.+.++++..|+.+|+..+++||++.+.|++|..++..+.++++++|.+|+++||..|++.|+|.++++.++
T Consensus 81 Ylgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fELe~Ltg~~~~~~~d 160 (281)
T COG2240 81 YLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFELEILTGKPLNTLDD 160 (281)
T ss_pred cCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHHHHHhCCCCCCHHH
Confidence 99999999999999999999999999999999999889999999999888779999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEeeec----CCcEEEEeeeccCCCCCCceEEEEccccCCCCCCchHHHHHHHHHhhccCCCC
Q 024300 174 GREACKILHAAGPAKVVITSINI----DGNLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWSNKYRDN 249 (269)
Q Consensus 174 ~~~a~~~l~~~g~~~Vvvt~g~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~a~~~~~l~~~g~~ 249 (269)
+.++++.|.+.|++.|+||.-.. .+.+++..... ....++. |.++..++|+||.|+|.|++.+.+ |.+
T Consensus 161 a~~aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~------~~~~h~~-~~v~~~~~GtGDL~sallla~lL~-g~~ 232 (281)
T COG2240 161 AVKAARKLGADGPKIVLVTSLSRAGMSTGNFEMLGKSA------ELAWHIS-PLVPFIPNGTGDLFSALLLARLLE-GLS 232 (281)
T ss_pred HHHHHHHHhhcCCCEEEEecccccCCCCceEEEeccch------hhhhhhh-hcCCCCCCCchHHHHHHHHHHHHc-CCC
Confidence 99999999999999999997532 23444433111 1233443 566667999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 024300 250 LDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 250 ~~~a~~~A~~~~~~~l~~~ 268 (269)
+.+|+..+.+++.++++.|
T Consensus 233 ~~~al~~~~~~V~evl~~T 251 (281)
T COG2240 233 LTQALERATAAVYEVLQET 251 (281)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999865
No 7
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=100.00 E-value=6.8e-36 Score=254.23 Aligned_cols=243 Identities=53% Similarity=0.842 Sum_probs=200.7
Q ss_pred cEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCC-CccccEEEEcc
Q 024300 16 RVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANN-LLYYTHLLTGY 94 (269)
Q Consensus 16 ~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~G~ 94 (269)
+||+|+|+|++|++|..+++++++.+|+.+..++|.....+++.....+..+++++++++++.+.+.. ...+++|++|+
T Consensus 1 ~vl~i~~~~~~g~ag~~ad~~~~~~~g~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~ 80 (254)
T cd01173 1 RVLSIQSHVVHGYVGNSAAVFPLQRLGWDVDALPTVQFSNHTGYGTWTGFVLSAEELEDLLEGLEALGLLLEYDAVLTGY 80 (254)
T ss_pred CEEEEecceecceECCeeHHHHHHHcCCccceeCceecCCCCCCCCCCCeecCHHHHHHHHHHHHHcCCcccCCEEEEec
Confidence 68999999999999999999999999999999988765555554313457788899999999887743 23578999999
Q ss_pred cCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCcc-CChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCHHH
Q 024300 95 IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLY-VPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEAD 173 (269)
Q Consensus 95 l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~-~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~~~ 173 (269)
+++....+.+.++++.++++.|+++|++||++++.++.| ..++..+.+++.+.+++|+++||..|++.|+|.+..+.++
T Consensus 81 l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~l~g~~~~~~~~ 160 (254)
T cd01173 81 LGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELELLTGKKINDLED 160 (254)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHHHcCCCcCCHHH
Confidence 999899999999999998643478999999998655566 3677778888734449999999999999999998878889
Q ss_pred HHHHHHHHHhcCCCeEEEEeeec-----CCcEEEEeeeccCCCCCCceEEEEccccC--CCCCCchHHHHHHHHHhhccC
Q 024300 174 GREACKILHAAGPAKVVITSINI-----DGNLFLIGSHQKEKGQSPEQFKIVIPKIP--AYFTGTGDLMTALLLGWSNKY 246 (269)
Q Consensus 174 ~~~a~~~l~~~g~~~Vvvt~g~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dt~GaGDaf~a~~~~~l~~~ 246 (269)
.++++++|.++|++.|++|+|+. .|++++.. ++.+.++.+.++ +|++||||+|+|+|+++|++
T Consensus 161 ~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~---------~~~~~~~~~~~~~~~~~~GaGD~f~a~~~~~l~~- 230 (254)
T cd01173 161 AKAAARALHAKGPKTVVVTSVELADDDRIEMLGSTA---------TEAWLVQRPKIPFPAYFNGTGDLFAALLLARLLK- 230 (254)
T ss_pred HHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEec---------CccEEEEeeccCCCCCcCChHHHHHHHHHHHHHc-
Confidence 99999999999999999999842 14555432 133445556565 69999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC
Q 024300 247 RDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 247 g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
|+++++|+++|++++.++|+++
T Consensus 231 g~~~~~a~~~A~~~~~~~i~~~ 252 (254)
T cd01173 231 GKSLAEALEKALNFVHEVLEAT 252 (254)
T ss_pred CCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999864
No 8
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=100.00 E-value=6.5e-36 Score=258.52 Aligned_cols=244 Identities=43% Similarity=0.674 Sum_probs=207.2
Q ss_pred CCcEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCc-cccEEEE
Q 024300 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL-YYTHLLT 92 (269)
Q Consensus 14 ~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~ 92 (269)
|++||+|+++..+|++|+.+++..|+.+|+++..++|+..++|+++..+.|..++.++++.+++.+++...+ .+|+|++
T Consensus 1 ~~~vl~i~~~~~~g~~~~~~~~~~l~~~g~~~~~~pT~~~s~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~ 80 (286)
T TIGR00687 1 MKNVLSIQSHVVYGHVGNRAATFPLQRLGFEVWAVNTVQFSNHTGYGKWTGQVLPPDELTELVDGLAAINKLNQCDAVLS 80 (286)
T ss_pred CCeEEEEcCceecccccCchHHHHHHHcCCcceeeCcEEcCCCCCCCCCcCeECCHHHHHHHHHHHHhcCccccCCEEEE
Confidence 579999999999999999999999999999999999999999999988888899999999999998654222 5889999
Q ss_pred cccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCC-CccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCH
Q 024300 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEG-KLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (269)
Q Consensus 93 G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~-~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~ 171 (269)
|++++.+..+.+.++++.+++.++++++++||++++.+ ..|..++..+.+++.+++++|+++||..|++.|+|.+..+.
T Consensus 81 G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii~pN~~Ea~~L~g~~~~~~ 160 (286)
T TIGR00687 81 GYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADIITPNQFELELLTGRKINTV 160 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEecCCHHHHHHHhCCCcCCH
Confidence 99999999999999999998764557899999999653 24556677777776689999999999999999999887777
Q ss_pred HHHHHHHHHHHhcCCCeEEEE-eeecCCc--------EEEEeeeccCCCCCCceEEEEccccC--CCCCCchHHHHHHHH
Q 024300 172 ADGREACKILHAAGPAKVVIT-SINIDGN--------LFLIGSHQKEKGQSPEQFKIVIPKIP--AYFTGTGDLMTALLL 240 (269)
Q Consensus 172 ~~~~~a~~~l~~~g~~~Vvvt-~g~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~--~dt~GaGDaf~a~~~ 240 (269)
+++.++++.|+++|++.|++| .| .+|+ +++.+ ++.++++.+..+ +|++||||+|+|+|+
T Consensus 161 ~~~~~~~~~l~~~g~~~Viit~~g-~~g~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~d~~GaGD~f~A~~l 230 (286)
T TIGR00687 161 EEALAAADALIAMGPDIVLVTHLA-RAGSQRDRDFEGLVVTQ---------EGRWHISRPLAVFMRQPVGTGDLIAALLL 230 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecc-ccCCCCCcceeEEEEcC---------CceEEEeccCcCCCCCCCChHHHHHHHHH
Confidence 888899999999999999999 45 4554 22221 234555555554 589999999999999
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 241 GWSNKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 241 ~~l~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
+++++ |+++++|+++|+++++.+++++
T Consensus 231 ~~l~~-g~~~~~al~~A~~~v~~~l~~t 257 (286)
T TIGR00687 231 ATLLH-GNSLKEALEKTVSAVYHVLVTT 257 (286)
T ss_pred HHHhc-CCCHHHHHHHHHHHHHHHHHHH
Confidence 99998 9999999999999999988764
No 9
>PRK12616 pyridoxal kinase; Reviewed
Probab=100.00 E-value=1.6e-35 Score=253.77 Aligned_cols=239 Identities=20% Similarity=0.216 Sum_probs=192.2
Q ss_pred CCCcEEEEecccccCccccccchHHHHhcC-CceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEE
Q 024300 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLG-YDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (269)
Q Consensus 13 ~~~~vl~i~g~~~~g~~G~~a~~~~l~~~G-v~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (269)
++++||+|+|+|++|++|..+++++++++| ...+.++..++|++.++.......++.+.+.++++.+.+.. .+++|+
T Consensus 2 ~~~~vl~iaG~D~sggaGi~aD~~t~~~~g~~~~~~~T~~t~q~~~~~~~~~v~~~~~~~i~~ql~~l~~d~--~~~aik 79 (270)
T PRK12616 2 SMHKALTIAGSDSSGGAGIQADLKTFQEKNVYGMTALTVVVAMDPENSWDHQVFPIDTDTIRAQLSTIVDGI--GVDAMK 79 (270)
T ss_pred CCCeEEEEEeeCCCchHHHHHHHHHHHHcCCcccceeeEEeeEeCCCcceeEEEECCHHHHHHHHHHHHcCC--CCCEEE
Confidence 467999999999999999999999999999 68888888887777653112235788888888888776532 489999
Q ss_pred EcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccC-CCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCC-CCC
Q 024300 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDE-GKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF-RIG 169 (269)
Q Consensus 92 ~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~-~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~-~~~ 169 (269)
+|++++.+..+.+.++++..+ ..++|+||++.++ +..+..++..+.+++.+++++|+++||..|++.|+|. ...
T Consensus 80 iG~l~s~~~i~~i~~~l~~~~----~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g~~~~~ 155 (270)
T PRK12616 80 TGMLPTVDIIELAADTIKEKQ----LKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSGMGEIK 155 (270)
T ss_pred ECCCCCHHHHHHHHHHHHhcC----CCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcCCCCCC
Confidence 999999887777776665441 2479999999753 3344456777777776889999999999999999997 566
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEeeecCCc------EEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHh
Q 024300 170 SEADGREACKILHAAGPAKVVITSINIDGN------LFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGW 242 (269)
Q Consensus 170 ~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~ 242 (269)
+.++++++++.|+++|++.|+||+|+ .|. +++.+ ++.+.++.++++ .+++||||+|+|+|+++
T Consensus 156 ~~~~~~~aa~~l~~~G~~~VvVt~G~-~g~~~~~~~~~~~~---------~~~~~~~~~~~~~~~t~GaGD~fsaalaa~ 225 (270)
T PRK12616 156 TVEQMKEAAKKIHELGAQYVVITGGG-KLKHEKAVDVLYDG---------ETAEVLESEMIDTPYTHGAGCTFSAAVTAE 225 (270)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC-CCcCCceEEEEEEC---------CeEEEEEeeeeCCCCCCcHHHHHHHHHHHH
Confidence 77889999999999999999999984 431 33322 244566777776 47899999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 243 SNKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 243 l~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
|++ |+++++|+++|..+++++|+++
T Consensus 226 l~~-g~~l~~Av~~A~~~~~~~i~~s 250 (270)
T PRK12616 226 LAK-GSEVKEAIYAAKEFITAAIKES 250 (270)
T ss_pred HHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 998 9999999999999999999863
No 10
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=100.00 E-value=2e-35 Score=251.24 Aligned_cols=232 Identities=24% Similarity=0.314 Sum_probs=189.1
Q ss_pred EEEEecccccCccccccchHHHHhcC-CceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEEccc
Q 024300 17 VLSIQSHTVQGYVGNKSAVFPLQLLG-YDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYI 95 (269)
Q Consensus 17 vl~i~g~~~~g~~G~~a~~~~l~~~G-v~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l 95 (269)
||+|+|+|++|++|..+++++++++| ..++.++..++|++.++..+ .+++++.++++++.+.+.. .+++|++|++
T Consensus 1 vl~iag~D~sggaGi~aD~~t~~~~g~~~~~v~T~~t~q~~~~v~~~--~~~~~~~~~~q~~~~~~d~--~~~aikiG~l 76 (254)
T TIGR00097 1 ALTIAGSDSGGGAGIQADLKTFSALGVFGTSVITALTAQNTRGVTGV--YPIPPDFVEAQLDAVFSDI--PVDAAKTGML 76 (254)
T ss_pred CEEEeeeCCCcHHHHHHHHHHHHHcCCeecceeEEEEeEcCcceEEE--EECCHHHHHHHHHHHHhCC--CCCEEEECCc
Confidence 69999999999999999999999999 67777888888888776544 6788899999888877632 4789999999
Q ss_pred CChhhHHHHHHHHHHHHhcCCCc-eEEEcccccc-CCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCHHH
Q 024300 96 GSVSFLNTILQVVEKLRSINPNL-IYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEAD 173 (269)
Q Consensus 96 ~~~~~~~~i~~~l~~~k~~~~~~-~vv~Dp~~~~-~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~~~ 173 (269)
.+.+..+.+ ++.++++ +. ++||||+++. .+..+..++..+.+++.+++++|+++||..|++.|+|.+..+.++
T Consensus 77 ~~~~~~~~i---~~~~~~~--~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~ 151 (254)
T TIGR00097 77 ASAEIVEAV---ARKLREY--PVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNLPEAEALLGTKIRTEQD 151 (254)
T ss_pred CCHHHHHHH---HHHHHhc--CCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEecCCHHHHHHHhCCCCCCHHH
Confidence 886555544 4555555 67 7999999873 444445556666666558899999999999999999987777788
Q ss_pred HHHHHHHHHhcCCCeEEEEeeec---CCc-EEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhccCCC
Q 024300 174 GREACKILHAAGPAKVVITSINI---DGN-LFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRD 248 (269)
Q Consensus 174 ~~~a~~~l~~~g~~~Vvvt~g~~---~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~~~g~ 248 (269)
..++++.|.++|++.|++|+|+. ++. +++.+ ++.++++.++++ +|++||||+|+|+|+++|++ |+
T Consensus 152 ~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~d~~GaGD~f~aalaa~la~-g~ 221 (254)
T TIGR00097 152 MIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDG---------GEIHILKAPRIETKNTHGTGCTLSAAIAANLAK-GL 221 (254)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEEC---------CeEEEEEecccCCCCCCChHHHHHHHHHHHHHC-CC
Confidence 89999999999999999999842 233 33432 245567777777 58999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHhhc
Q 024300 249 NLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 249 ~~~~a~~~A~~~~~~~l~~ 267 (269)
++++|+++|++++++.|++
T Consensus 222 ~l~eA~~~A~~~~~~~i~~ 240 (254)
T TIGR00097 222 SLKEAVKEAKEFVTGAIRY 240 (254)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999976
No 11
>PRK07105 pyridoxamine kinase; Validated
Probab=100.00 E-value=2.7e-35 Score=254.33 Aligned_cols=244 Identities=27% Similarity=0.402 Sum_probs=200.3
Q ss_pred CCCCcEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCC-CCCcceeecCHHHHHHHHHHHHhCCCccccEE
Q 024300 12 SETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTG-YPTFKGQVLNGQQLCDLIEGLEANNLLYYTHL 90 (269)
Q Consensus 12 ~~~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 90 (269)
.-|++||+++++..+|++|+.+++++++.+|+....+.|...+++++ +..+.+..+ .++++.+++.|.+.+. .+++|
T Consensus 2 ~~~~~vl~~~d~~~~G~aG~~adi~~~~~~g~~~~~v~T~~~~q~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~ai 79 (284)
T PRK07105 2 NPVKRVAAIHDLSGFGRVALTASIPIMSSMGLQVCPLPTALLSSHTGGFQNPSIIDL-TDGMQAFLTHWKSLNL-KFDAI 79 (284)
T ss_pred CCCCeEEEEecccccceehHhhHHHHHHHcCCcceeccceEeccCCCCCCCCeEeec-HHHHHHHHHHHHHcCC-ccCEE
Confidence 34779999999999999999999999999999888888876556554 766555555 5788888888887765 68999
Q ss_pred EEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCcc--CChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCC
Q 024300 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLY--VPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRI 168 (269)
Q Consensus 91 ~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~--~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~ 168 (269)
++|++++.+..+.+.++++.+++. ++++++||++++++.+| .+++..+.+++ +++++|+++||..|++.|+|.++
T Consensus 80 k~G~l~~~~~~~~v~~~~~~~~~~--~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~-ll~~advitpN~~Ea~~L~g~~~ 156 (284)
T PRK07105 80 YSGYLGSPRQIQIVSDFIKYFKKK--DLLVVVDPVMGDNGKLYQGFDQEMVEEMRK-LIQKADVITPNLTEACLLLDKPY 156 (284)
T ss_pred EECcCCCHHHHHHHHHHHHHhccC--CCeEEECCccccCCcCCCCCCHHHHHHHHH-HHhhCCEecCCHHHHHHHcCCCc
Confidence 999999988889999989888765 88999999998655555 35677777876 99999999999999999999765
Q ss_pred C----CHHHHHHHHHHHHhcCCCeEEEEeeec----CCcEEEEeeeccCCCCCCceEEEEccccCCCCCCchHHHHHHHH
Q 024300 169 G----SEADGREACKILHAAGPAKVVITSINI----DGNLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLL 240 (269)
Q Consensus 169 ~----~~~~~~~a~~~l~~~g~~~Vvvt~g~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~a~~~ 240 (269)
. +.++++++++.|.+.|++.|++|+++. .|.+++... . +..+.++.+.++++++||||+|+|+|+
T Consensus 157 ~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~~-~------~~~~~~~~~~~~~~~~GaGD~f~aa~~ 229 (284)
T PRK07105 157 LEKSYSEEEIKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYDRA-T------DRFWKVFCKYIPAHYPGTGDIFTSVIT 229 (284)
T ss_pred CcCCCCHHHHHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEeCC-C------CeEEEEeecccCCCcCChhHHHHHHHH
Confidence 3 467888899999999999999999532 345554321 0 134455566666899999999999999
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 241 GWSNKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 241 ~~l~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
+++++ |+++++|+++|+++++++|+++
T Consensus 230 ~~l~~-g~~l~~av~~A~~~~~~~i~~~ 256 (284)
T PRK07105 230 GSLLQ-GDSLPIALDRAVQFIEKGIRAT 256 (284)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 99998 9999999999999999999864
No 12
>PTZ00344 pyridoxal kinase; Provisional
Probab=100.00 E-value=4.5e-35 Score=254.14 Aligned_cols=251 Identities=47% Similarity=0.768 Sum_probs=207.2
Q ss_pred CCCCcEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCC-ccccEE
Q 024300 12 SETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNL-LYYTHL 90 (269)
Q Consensus 12 ~~~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i 90 (269)
+++++||+|++++++|++|+.+++..++.+|+++..++++.+++++++..+.|..++.++++++++.|.+... ..+++|
T Consensus 2 ~~~~~vl~i~~~~~~G~~G~~~~~~~l~~~g~~~~~~~tv~ls~~~~~~~~~g~~i~~~~~~~~l~~l~~~~~~~~~~~v 81 (296)
T PTZ00344 2 SMEKKVLSIQSHVTHGYVGNRAATFPLQLLGFDVDFVNTVQLSNHTGYPVIKGHRLDLNELITLMDGLRANNLLSDYTYV 81 (296)
T ss_pred CCCCeEEEEcceeecccccchhHHHHHHHcCCcceeeccEecCCCCCCCCccCeeCCHHHHHHHHHHHHhcCCcccCCEE
Confidence 5688999999999999999999999999999999999999888899876667788999999999999976432 236899
Q ss_pred EEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCC
Q 024300 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGS 170 (269)
Q Consensus 91 ~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~ 170 (269)
++|++++.+..+.+.++++.++++.+++++|+||++.+.+++|..++..+.+++ +++++|+++||+.|++.|+|.+..+
T Consensus 82 ~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~-ll~~~dii~pN~~E~~~L~g~~~~~ 160 (296)
T PTZ00344 82 LTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRE-LIPYADVITPNQFEASLLSGVEVKD 160 (296)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHH-HhhhCCEEeCCHHHHHHHhCCCCCC
Confidence 999999988888889999888776334689999999877777877888888885 8999999999999999999987777
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeee--cCC----cEEEEeeeccCCCCCCceEEEEccccCCCCCCchHHHHHHHHHhhc
Q 024300 171 EADGREACKILHAAGPAKVVITSIN--IDG----NLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWSN 244 (269)
Q Consensus 171 ~~~~~~a~~~l~~~g~~~Vvvt~g~--~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~a~~~~~l~ 244 (269)
.+++.++++.+.+.|++.|++|+++ .+| .++...... +..++.+.+..++++.+++||||+|+|+|++.+.
T Consensus 161 ~~~~~~~~~~l~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~GaGD~f~A~~~a~l~ 237 (296)
T PTZ00344 161 LSDALEAIDWFHEQGIPVVVITSFREDEDPTHLRFLLSCRDKD---TKNNKRFTGKVPYIEGRYTGTGDLFAALLLAFSH 237 (296)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeecCCCCCCcEEEEEEecccc---CCCceeEEEeccccCCCCCCchHHHHHHHHHHHh
Confidence 7788889999998899999999653 233 233221100 0001345566677777889999999999999998
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 245 KYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 245 ~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
+ | ++++|+++|.++++++|+++
T Consensus 238 ~-g-~~~~a~~~A~a~~~~~i~~~ 259 (296)
T PTZ00344 238 Q-H-PMDLAVGKAMGVLQDIIKAT 259 (296)
T ss_pred c-C-CHHHHHHHHHHHHHHHHHHH
Confidence 8 8 99999999999999999864
No 13
>PRK12412 pyridoxal kinase; Reviewed
Probab=100.00 E-value=4.7e-35 Score=250.67 Aligned_cols=237 Identities=24% Similarity=0.250 Sum_probs=185.0
Q ss_pred CCcEEEEecccccCccccccchHHHHhcCC-ceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEE
Q 024300 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGY-DVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT 92 (269)
Q Consensus 14 ~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv-~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 92 (269)
++.||+|+|+|++|++|+.+++++++++|+ .+..++..+++++.+........++.+.++++++.+.+.. .+++|++
T Consensus 1 ~~~vl~iag~D~sggaGi~aD~~t~~~lg~~~~~v~Ta~t~q~~~~~~~~~v~~~~~~~i~~q~~~l~~d~--~~~~iki 78 (268)
T PRK12412 1 LNKALTIAGSDTSGGAGIQADLKTFQELGVYGMTSLTTIVTMDPHNGWAHNVFPIPASTLKPQLETTIEGV--GVDALKT 78 (268)
T ss_pred CCeEEEEEeeCCCchHHHHHHHHHHHHcCCeeceeeeEEEeEcCCCCcEEEEEeCCHHHHHHHHHHHHhCC--CCCEEEE
Confidence 468999999999999999999999999995 5555566666666542212235677788888877665532 4789999
Q ss_pred cccCChhhHHHHHHHHHHHHhcCCCce-EEEccccccCC-CccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCC
Q 024300 93 GYIGSVSFLNTILQVVEKLRSINPNLI-YVCDPVMGDEG-KLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGS 170 (269)
Q Consensus 93 G~l~~~~~~~~i~~~l~~~k~~~~~~~-vv~Dp~~~~~~-~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~ 170 (269)
|++++.+..+.+.+++ ++. +.+ +|+||++.+++ ..+..++..+.+++.+++++|+++||..|++.|+|.++.+
T Consensus 79 G~l~~~~~v~~i~~~~---~~~--~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~~~~~ 153 (268)
T PRK12412 79 GMLGSVEIIEMVAETI---EKH--NFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLSGVKINS 153 (268)
T ss_pred CCCCCHHHHHHHHHHH---Hhc--CCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHhCcCCCC
Confidence 9998876666555544 444 444 99999998543 3334555556666668999999999999999999988878
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeeecCCc------EEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhh
Q 024300 171 EADGREACKILHAAGPAKVVITSINIDGN------LFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWS 243 (269)
Q Consensus 171 ~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l 243 (269)
.++++++++.|+++|++.|+||+|+ .|. +++.+ +..+.++.++++ ++++||||+|+|+|+++|
T Consensus 154 ~~~~~~aa~~l~~~g~~~ViIt~G~-~g~~~~~~~~~~~~---------~~~~~~~~~~v~~~~t~GaGD~f~aa~aa~l 223 (268)
T PRK12412 154 LEDMKEAAKKIHALGAKYVLIKGGS-KLGTETAIDVLYDG---------ETFDLLESEKIDTTNTHGAGCTYSAAITAEL 223 (268)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccC-CCCCCceEEEEEeC---------CEEEEEEeCccCCCCCCchHHHHHHHHHHHH
Confidence 8889999999999999999999984 432 22221 234567777777 589999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 244 NKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 244 ~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
++ |+++++|+++|.+++.+.|+++
T Consensus 224 ~~-g~~l~eA~~~A~~~~~~~i~~~ 247 (268)
T PRK12412 224 AK-GKPVKEAVKTAKEFITAAIRYS 247 (268)
T ss_pred HC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 98 9999999999999999998863
No 14
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=100.00 E-value=2.2e-34 Score=243.16 Aligned_cols=235 Identities=22% Similarity=0.289 Sum_probs=188.7
Q ss_pred cEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEEccc
Q 024300 16 RVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYI 95 (269)
Q Consensus 16 ~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l 95 (269)
.||+|+|+|++|++|..+++++++.+|+....+.|...+.+++ .......++++.+.++++.+.+. .++++|++|++
T Consensus 1 ~vl~i~g~d~~ggag~~adi~~~~~~g~~~~~~~T~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~G~l 77 (242)
T cd01169 1 VVLTIAGSDSSGGAGIQADLKTFAALGVYGMSVITALTAQNTL-GVFGVHPVPPEFVAAQLDAVLED--IPVDAIKIGML 77 (242)
T ss_pred CEEEEeeeCCCCHHHHHHHHHHHHHcCCEecceeEEEEeEcCc-ceeEEEECCHHHHHHHHHHHHhC--CCCCEEEECCC
Confidence 4899999999999999999999999999888887775545554 22234668888888888887653 35899999999
Q ss_pred CChhhHHHHHHHHHHHHhcCCCceEEEccccccCC-CccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCHHHH
Q 024300 96 GSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEG-KLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADG 174 (269)
Q Consensus 96 ~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~-~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~~~~ 174 (269)
.+.+..+.+.+++++. +++++++||++++.+ ..+.+++..+.+++.+++++|+++||..|++.|+|.+..+.++.
T Consensus 78 ~~~~~~~~i~~~~~~~----~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~~ 153 (242)
T cd01169 78 GSAEIIEAVAEALKDY----PDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTGLEIATEEDM 153 (242)
T ss_pred CCHHHHHHHHHHHHhC----CCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhCCCCCCHHHH
Confidence 9877777666655543 378999999998533 34456666666766578999999999999999999877777778
Q ss_pred HHHHHHHHhcCCCeEEEEeeecCC-----cEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhccCCC
Q 024300 175 REACKILHAAGPAKVVITSINIDG-----NLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRD 248 (269)
Q Consensus 175 ~~a~~~l~~~g~~~Vvvt~g~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~~~g~ 248 (269)
+++++.+.++|++.|++|+|+ .+ .+++.. ++.++++.++++ .+++|+||+|+|+|+++|++ |+
T Consensus 154 ~~~~~~l~~~g~~~Vvit~g~-~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~GaGD~f~a~l~a~l~~-g~ 222 (242)
T cd01169 154 MKAAKALLALGAKAVLIKGGH-LPGDEAVDVLYDG---------GGFFEFESPRIDTKNTHGTGCTLSSAIAANLAK-GL 222 (242)
T ss_pred HHHHHHHHhcCCCEEEEecCC-CCCCceeEEEEEC---------CcEEEEecceeCCCCCCChHHHHHHHHHHHHHC-CC
Confidence 888899999999999999984 43 234432 245567777776 69999999999999999998 99
Q ss_pred CHHHHHHHHHHHHHHHhhcC
Q 024300 249 NLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 249 ~~~~a~~~A~~~~~~~l~~~ 268 (269)
++++|+++|+++++++|++.
T Consensus 223 ~~~~A~~~A~~~~~~~i~~~ 242 (242)
T cd01169 223 SLEEAVREAKEYVTQAIRNA 242 (242)
T ss_pred CHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999863
No 15
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=100.00 E-value=7.8e-34 Score=243.16 Aligned_cols=237 Identities=24% Similarity=0.302 Sum_probs=186.8
Q ss_pred CCCcEEEEecccccCccccccchHHHHhcCCceeeeceEEe-ecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEE
Q 024300 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQF-SNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (269)
Q Consensus 13 ~~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (269)
.++.||+|+|+|++|++|+.+++++++.+|+....+.|... +++.++..+ ..++.+.+.++++.+.+.. .+++|+
T Consensus 3 ~~~~vl~i~g~d~~ggaG~~adi~~~~~~g~~~~~v~Ta~~~q~~~~~~~~--~~~~~~~~~~q~~~~~~~~--~~~ai~ 78 (266)
T PRK06427 3 KRPIALTIAGSDSGGGAGIQADLKTFQALGVYGMSAITALTAQNTLGVQRV--HPIPPEFVAAQLDAVFSDI--RIDAVK 78 (266)
T ss_pred CCCEEEEEeecCCCCcHHHHHHHHHHHHcCCEEeeeeeEEEeecCCCeeEE--EeCCHHHHHHHHHHHHhcC--CCCEEE
Confidence 46789999999999999999999999999988888877654 355565433 5677788888777765532 589999
Q ss_pred EcccCChhhHHHHHHHHHHHHhcCCC-ceEEEccccccCC-CccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCC
Q 024300 92 TGYIGSVSFLNTILQVVEKLRSINPN-LIYVCDPVMGDEG-KLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG 169 (269)
Q Consensus 92 ~G~l~~~~~~~~i~~~l~~~k~~~~~-~~vv~Dp~~~~~~-~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~ 169 (269)
+|++++.+..+.+. +.+++. + .++++||++++.+ ..+..++..+.+++.+++++|+++||..|++.|+|.++.
T Consensus 79 iG~l~~~~~~~~i~---~~~~~~--~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~ 153 (266)
T PRK06427 79 IGMLASAEIIETVA---EALKRY--PIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTGLPIA 153 (266)
T ss_pred ECCcCCHHHHHHHH---HHHHhC--CCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhCCCCC
Confidence 99998866555544 444544 4 4899999998533 344566666677656899999999999999999998765
Q ss_pred CHHH-HHHHHHHHHhcCCCeEEEEeeec-CCc----EEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHh
Q 024300 170 SEAD-GREACKILHAAGPAKVVITSINI-DGN----LFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGW 242 (269)
Q Consensus 170 ~~~~-~~~a~~~l~~~g~~~Vvvt~g~~-~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~ 242 (269)
+.++ ++++++.|+++|++.|+||+|+. +|. +++.+ ++.+.++.++++ ++++|+||+|+|+|+++
T Consensus 154 ~~~~~~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~GaGD~f~a~l~~~ 224 (266)
T PRK06427 154 DTEDEMKAAARALHALGCKAVLIKGGHLLDGEESVDWLFDG---------EGEERFSAPRIPTKNTHGTGCTLSAAIAAE 224 (266)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCceeEEEEeC---------CcEEEEEeeeECCCCCCChHHHHHHHHHHH
Confidence 5554 78899999999999999999841 443 44432 244567777776 49999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 243 SNKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 243 l~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
+++ |+++++|+++|++++.+.++++
T Consensus 225 l~~-g~~l~~A~~~A~~~~~~~i~~~ 249 (266)
T PRK06427 225 LAK-GASLLDAVQTAKDYVTRAIRHA 249 (266)
T ss_pred HHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999998864
No 16
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=1.1e-33 Score=243.85 Aligned_cols=250 Identities=16% Similarity=0.240 Sum_probs=195.6
Q ss_pred CCCcEEEEecccccCccccccchHHHHhcC-CceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEE
Q 024300 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLG-YDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (269)
Q Consensus 13 ~~~~vl~i~g~~~~g~~G~~a~~~~l~~~G-v~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (269)
.+++||+|+|+|++|++|..++++++.++| ..++.++..++|++.|+..+ ..++++.++++++.+.+.. .+++|+
T Consensus 3 ~~p~VLtIAGsDpsGGAGiqADlkt~~alGv~g~sviTalTaQnt~~V~~v--~~v~~~~i~~Ql~all~D~--~i~aIK 78 (321)
T PTZ00493 3 GVSNILSIAGSDSCGGAGMQADIKTAMGLGCHCCTALVVLTAQNTKEVKRI--VEIEEKFIVEQLDSIFADV--TIDVVK 78 (321)
T ss_pred CCCEEEEEeeeCCCCchHHHHHHHHHHHcCCccceEEEEEEEEcCCceEEE--EECCHHHHHHHHHHHHhCC--CCCEEE
Confidence 467999999999999999999999999999 68888898898898886655 6788899999888877532 478999
Q ss_pred EcccCChhhHHHHHHHHHHHHhcCC-CceEEEccccc-cCCCccCC-hhhHHHHHHhccCCCcEEcCCHHHHHHhhC---
Q 024300 92 TGYIGSVSFLNTILQVVEKLRSINP-NLIYVCDPVMG-DEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAEQLTG--- 165 (269)
Q Consensus 92 ~G~l~~~~~~~~i~~~l~~~k~~~~-~~~vv~Dp~~~-~~~~~~~~-~~~~~~~~~~ll~~~dii~pN~~E~~~l~g--- 165 (269)
+|++++.+..+.+.++++...++++ ..+||+||++. .+|..+.. ++..+.+++.++|+++++|||..|++.|+|
T Consensus 79 iGmL~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea~~L~g~~~ 158 (321)
T PTZ00493 79 LGVLYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYECKVILEALD 158 (321)
T ss_pred ECCcCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHHHHHhCCCc
Confidence 9999999989999988876632111 23599999998 45555556 467777777799999999999999999998
Q ss_pred --CCCCCHHHHHHHHHHHHh-cCCCeEEEEeeecCC-----c------EEEEee---ecc---CCCCCC------ceEEE
Q 024300 166 --FRIGSEADGREACKILHA-AGPAKVVITSINIDG-----N------LFLIGS---HQK---EKGQSP------EQFKI 219 (269)
Q Consensus 166 --~~~~~~~~~~~a~~~l~~-~g~~~Vvvt~g~~~g-----~------~~~~~~---~~~---~~~~~~------~~~~~ 219 (269)
..+ +.++++++++.|++ +|++.|+||+|+.++ . +++... +.. ++...+ ..+.+
T Consensus 159 ~~~~~-~~~~~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (321)
T PTZ00493 159 CQMDL-SKANMTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAGGVTYLYDVYKL 237 (321)
T ss_pred ccCCC-CHHHHHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCCccccccccccccccccccccceEEEE
Confidence 332 46788999999986 699999999987431 1 222100 000 000001 13457
Q ss_pred EccccC-CCCCCchHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 220 VIPKIP-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 220 ~~~~~~-~dt~GaGDaf~a~~~~~l~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
..++++ .+++|+||+|+++++++|++ |+++++|++.|..+++++|+++
T Consensus 238 ~~~ri~~~~~hGTGc~fASAIAa~LA~-G~~l~~Av~~A~~fv~~aI~~s 286 (321)
T PTZ00493 238 RSKRKPGKDIHGTGCTLSTAIACYLAK-KHNILQSCIESKKYIYNCIRYA 286 (321)
T ss_pred EecccCCCCCCChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHH
Confidence 777777 46799999999999999999 9999999999999999998763
No 17
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=100.00 E-value=3.4e-33 Score=236.11 Aligned_cols=230 Identities=30% Similarity=0.438 Sum_probs=177.4
Q ss_pred cccCccccccchHHHHhcCCceeeeceE-EeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHH
Q 024300 24 TVQGYVGNKSAVFPLQLLGYDVDPIHSV-QFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLN 102 (269)
Q Consensus 24 ~~~g~~G~~a~~~~l~~~Gv~~~~i~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~ 102 (269)
|++|++|..+++++++++|+....+.|. +.+++.++..+ ..++.+.+.++++.+.+. ..+++|++|++++.+..+
T Consensus 1 DpsggaGi~aDi~t~~a~G~~~~~v~Talt~qn~~~~~~~--~~~~~~~~~~ql~~~~~~--~~~~aikiG~l~~~~~v~ 76 (246)
T PF08543_consen 1 DPSGGAGIQADIKTISALGVHGCPVPTALTSQNTYGVFDI--EPVDSEMIKAQLDALLED--MKFDAIKIGYLGSAEQVE 76 (246)
T ss_dssp ETTSSSHHHHHHHHHHHTTEEEEEEEEEEEEEETTEEEEE--EE--HHHHHHHHHHHHHT--SC-SEEEE-S-SSHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCccceEeEEEEecCCcceEEE--EECCHHHHHHHHHHhccc--ccccEEEEcccCCchhhh
Confidence 6899999999999999999766666554 45565554433 678888999999888763 268999999999988888
Q ss_pred HHHHHHHHHHhcCCCceEEEcccccc-CCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCHHHHHHHHHHH
Q 024300 103 TILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKIL 181 (269)
Q Consensus 103 ~i~~~l~~~k~~~~~~~vv~Dp~~~~-~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~~~~~~a~~~l 181 (269)
.+.++++. . +.++|+||++.+ .+..+..++..+.+++++++++|+++||..|++.|+|.++.+.+++.++++.|
T Consensus 77 ~i~~~l~~---~--~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~~i~~~~~~~~~~~~l 151 (246)
T PF08543_consen 77 IIADFLKK---P--KIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGREINSEEDIEEAAKAL 151 (246)
T ss_dssp HHHHHHHH---T--TTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS--SSHHHHHHHHHHH
T ss_pred hHHHHHhc---c--CCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCCCCCChHhHHHHHHHH
Confidence 88887743 3 679999999985 44555788899999988999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEeeec--CCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhccCCCCHHHHHHHHH
Q 024300 182 HAAGPAKVVITSINI--DGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAV 258 (269)
Q Consensus 182 ~~~g~~~Vvvt~g~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~~~g~~~~~a~~~A~ 258 (269)
+++|++.|+||+++. +...+.+-... . ++.+.+..++++ .+.+|+||.|+++|++.|++ |+++++|++.|.
T Consensus 152 ~~~G~~~VvItg~~~~~~~~~~~~~l~~--~---~~~~~~~~~~~~~~~~~GTGd~fss~laa~l~~-g~~l~~Av~~A~ 225 (246)
T PF08543_consen 152 LALGPKNVVITGGHLDGDEGIITDVLYD--G---GEFYWLSSPRIPTGSFHGTGDLFSSALAAFLAK-GYSLEEAVEKAK 225 (246)
T ss_dssp HHTS-SEEEEEEEEGGSSCEEEEEEEET--T---SEEEEEEEEEECTSGCTTHHHHHHHHHHHHHHT-TSSHHHHHHHHH
T ss_pred HHhCCceEEEeeeccccccccccceeee--c---cceeecceeEEcCCCCCCchhHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 999999999999964 22222221111 1 356677778887 68899999999999999999 999999999999
Q ss_pred HHHHHHhhcC
Q 024300 259 SSLQVLLLLM 268 (269)
Q Consensus 259 ~~~~~~l~~~ 268 (269)
.+++++|+++
T Consensus 226 ~~v~~~i~~t 235 (246)
T PF08543_consen 226 NFVRRAIKNT 235 (246)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 18
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=100.00 E-value=2.5e-33 Score=241.58 Aligned_cols=254 Identities=23% Similarity=0.275 Sum_probs=210.4
Q ss_pred CCCccccCCCCCCCcEEEEecccccCccccccchHHHHhcC-CceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHH
Q 024300 2 APPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLG-YDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLE 80 (269)
Q Consensus 2 ~~~~~~~~~~~~~~~vl~i~g~~~~g~~G~~a~~~~l~~~G-v~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (269)
-||+++++.+...+.+|+|+|+|+.|++|.+|+++++.++| +..+.++..+.|++.|+.++ ..++++.+.++++..-
T Consensus 11 ~~~~~t~~~~~~lPt~LTIAGSDcSGGAGIqADlKv~TAh~vYgMS~iTaltaQn~~gV~sv--~~lpp~~V~qqidacL 88 (523)
T KOG2598|consen 11 PPPMLTTASNRKLPTVLTIAGSDCSGGAGIQADLKVMTAHGVYGMSVITALTAQNTVGVYSV--HLLPPSFVSQQIDACL 88 (523)
T ss_pred CCchhhhhhhccCCeeEEEecCCCCCcccchhhhhhhhhhccchhhhhhhhhccCCccceee--ccCCHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999 79999999888888887665 4566666666665443
Q ss_pred hCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccc-cCCCccCChhhHHHHHHhccCCCcEEcCCHHH
Q 024300 81 ANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFE 159 (269)
Q Consensus 81 ~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~-~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E 159 (269)
+. ++|++|+.|||++.+....+.+.+++.+ -..+|+||++. .+|..+..++.+..+.++++|.+|+++||..|
T Consensus 89 ~D--i~C~VvKTGML~~~~I~~vi~q~l~~~~----~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~E 162 (523)
T KOG2598|consen 89 SD--IKCDVVKTGMLPSPEIVKVIEQSLQKFN----IPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPE 162 (523)
T ss_pred hc--CcccEEeecCcCchHHHHHHHHHHHhhc----CcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHH
Confidence 32 2589999999999888888888888753 34799999998 46767778888888888899999999999999
Q ss_pred HHHhhCC------CCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCc--EEE----------EeeeccCCCCCCceEEEEc
Q 024300 160 AEQLTGF------RIGSEADGREACKILHAAGPAKVVITSINIDGN--LFL----------IGSHQKEKGQSPEQFKIVI 221 (269)
Q Consensus 160 ~~~l~g~------~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~--~~~----------~~~~~~~~~~~~~~~~~~~ 221 (269)
+..|++. ++++..+++..++.++++|+++|++++|+-.-. .++ +-.+ ++ .+.+.++.
T Consensus 163 a~~Ll~~~~~~~~~i~~v~di~~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~Dvly---dG--~~F~~f~~ 237 (523)
T KOG2598|consen 163 AFILLKKEKREISKIQSVFDIAKDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLY---DG--KEFYIFKS 237 (523)
T ss_pred HHHHHhhcccCCcccccHHHHHHHHHHHHhcCcceEEEeCCCcCccccccccCcccCCceEEEEE---ec--ceEEEecc
Confidence 9999983 356788999999999999999999999864211 111 1111 11 46778888
Q ss_pred cccC-CCCCCchHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcCC
Q 024300 222 PKIP-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQVLLLLMP 269 (269)
Q Consensus 222 ~~~~-~dt~GaGDaf~a~~~~~l~~~g~~~~~a~~~A~~~~~~~l~~~~ 269 (269)
+.+. ..++|+||++++++++.|++ |.|+.+|++.|..|++++|++.+
T Consensus 238 ~~~~t~~tHGtgCtLaSAIASnLA~-g~sl~qAv~~ai~yvq~Ai~~s~ 285 (523)
T KOG2598|consen 238 PYLATKHTHGTGCTLASAIASNLAR-GYSLLQAVQGAIEYVQNAIAISC 285 (523)
T ss_pred cccccccccCccchHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHhcC
Confidence 8776 47899999999999999998 99999999999999999998753
No 19
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=1.4e-32 Score=254.54 Aligned_cols=236 Identities=20% Similarity=0.322 Sum_probs=188.7
Q ss_pred CCcEEEEecccccCccccccchHHHHhcCCc-eeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEE
Q 024300 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYD-VDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT 92 (269)
Q Consensus 14 ~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~-~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 92 (269)
+++||+|+|+|++|++|+.+++++++++|+. ++.++++++|+++|+..+ ..++.+.+.++++.+.+.. .+++|++
T Consensus 230 ~~~vLtIag~D~sggaGi~aDi~t~~~lg~~~~~~vta~t~qn~~~~~~~--~~~~~~~~~~ql~~l~~d~--~~~~Ik~ 305 (504)
T PTZ00347 230 IPTVLTVSGSDSGGGAGHQADLKTLEALGVYSTSALTSLTAQNTKGVQQI--QVVNEDFFAAQIDSVMSDF--NISVVKL 305 (504)
T ss_pred CCeEEEEeCcCCCChHHHHHHHHHHHHcCCcccchheeEEeEcCcceeeE--EeCCHHHHHHHHHHHHhCC--CCCEEEE
Confidence 5799999999999999999999999999964 478899999999987654 6788899999888876543 4789999
Q ss_pred cccCChhhHHHHHHHHHHHHhcCCCceEEEcccccc-CCCccCC----hhhHHHHHHhccCCCcEEcCCHHHHHHhhCCC
Q 024300 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVP----SELVSVYREKVVPVASMLTPNQFEAEQLTGFR 167 (269)
Q Consensus 93 G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~-~~~~~~~----~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~ 167 (269)
|++++.+..+.+.+.+ + ++++|+||++++ +|..+.. ++..+.+++.+++++|+++||..|++.|+|.+
T Consensus 306 G~l~s~e~i~~i~~~l---~----~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~ 378 (504)
T PTZ00347 306 GLVPTARQLEIVIEKL---K----NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAERILGRK 378 (504)
T ss_pred CCcCCHHHHHHHHHHh---c----CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHHHHhCCC
Confidence 9999866666555544 2 568999999973 4433332 23345555458999999999999999999974
Q ss_pred -CCCHHHHHHHHHHHHhcCCCeEEEEeeecC--C----cEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHH
Q 024300 168 -IGSEADGREACKILHAAGPAKVVITSINID--G----NLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALL 239 (269)
Q Consensus 168 -~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~--g----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~ 239 (269)
..+.++.+++++.|+++|++.|+||+|+.. + .+++... . ++.+.++.++++ ++++||||+|+|+|
T Consensus 379 ~~~~~~~~~~aa~~l~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~-~------~~~~~~~~~~i~~~~~~GaGD~fsaai 451 (504)
T PTZ00347 379 EITGVYEARAAAQALAQYGSRYVLVKGGHDLIDPEACRDVLYDRE-K------DRFYEFTANRIATINTHGTGCTLASAI 451 (504)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcCCCcceEEEEcCC-C------CeEEEEEeeeECCCCCCChHHHHHHHH
Confidence 566778889999999999999999998421 1 2333211 0 235567777777 68999999999999
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 240 LGWSNKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 240 ~~~l~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
++++++ |+++++|+++|.++++++|+++
T Consensus 452 aa~la~-G~~l~eAv~~A~~~v~~~i~~~ 479 (504)
T PTZ00347 452 SSFLAR-GYTVPDAVERAIGYVHEAIVRS 479 (504)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHHHHHhc
Confidence 999999 9999999999999999999864
No 20
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=5.8e-32 Score=229.95 Aligned_cols=234 Identities=18% Similarity=0.196 Sum_probs=178.6
Q ss_pred CCcEEEEecccccCccccccchHHHHhcCC-ceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEE
Q 024300 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGY-DVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT 92 (269)
Q Consensus 14 ~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv-~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 92 (269)
.+.||+|+|+|++|++|..++++++..+|+ ....++..+.++..|. .+ ...+.+.+.++++.+.. .++.++++
T Consensus 3 ~~~vl~iag~d~~ggaG~~aD~~~~~~~~~~~~~~~t~~t~~~~~G~-~v--~~~~~~~l~~~l~~l~~---~~~~~i~~ 76 (253)
T PRK12413 3 TNYILAISGNDIFSGGGLHADLATYTRNGLHGFVAVTCLTAMTEKGF-EV--FPVDKEIFQQQLDSLKD---VPFSAIKI 76 (253)
T ss_pred CCeEEEEeeeCCCCHHHHHHHHHHHHHcCCccCeeeEEEecccCCce-EE--EECCHHHHHHHHHHhhC---CCCCEEEE
Confidence 468999999999999999999999999995 6666666665666663 23 45666777777776632 24678999
Q ss_pred cccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCc-cCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCH
Q 024300 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKL-YVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (269)
Q Consensus 93 G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~-~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~ 171 (269)
|++++.+..+.+.++++. ++ +++++|||+++++.+. ...++..+.+++ +++++|+++||..|++.|+|.+..+.
T Consensus 77 G~l~~~~~~~~~~~~~~~--~~--~~~vv~DPv~~~~~~~~~~~~~~~~~l~~-ll~~~dli~pN~~E~~~L~g~~~~~~ 151 (253)
T PRK12413 77 GLLPNVEIAEQALDFIKG--HP--GIPVVLDPVLVCKETHDVEVSELRQELIQ-FFPYVTVITPNLVEAELLSGKEIKTL 151 (253)
T ss_pred CCcCCHHHHHHHHHHHHh--CC--CCCEEEcCceecCCCCccccHHHHHHHHH-HhccCcEECCCHHHHHHHhCcCCCCH
Confidence 999876555555555543 23 8899999999864321 134455666664 88999999999999999999888788
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeeecCC----cE-EEEeeeccCCCCCCceEEEEccccCCCCCCchHHHHHHHHHhhccC
Q 024300 172 ADGREACKILHAAGPAKVVITSINIDG----NL-FLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWSNKY 246 (269)
Q Consensus 172 ~~~~~a~~~l~~~g~~~Vvvt~g~~~g----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~a~~~~~l~~~ 246 (269)
++++++++.|++.|++.|++|+|+ .+ .. ++... ++.+..+.+...++++||||+|+|+|+++|++
T Consensus 152 ~~~~~~a~~l~~~g~~~Vvvt~g~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~GaGDaf~a~~~~~l~~- 221 (253)
T PRK12413 152 EDMKEAAKKLYDLGAKAVVIKGGN-RLSQKKAIDLFYDG--------KEFVILESPVLEKNNIGAGCTFASSIASQLVK- 221 (253)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC-CCCCCcceEEEEcC--------CEEEEEeecccCCCCCChHHHHHHHHHHHHHc-
Confidence 889999999999999999999984 32 22 22211 23333333333368999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC
Q 024300 247 RDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 247 g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
|+++++|+++|.++++++|+++
T Consensus 222 g~~l~ea~~~A~~~~~~~l~~~ 243 (253)
T PRK12413 222 GKSPLEAVKNSKDFVYQAIQQS 243 (253)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999864
No 21
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=8e-32 Score=245.63 Aligned_cols=235 Identities=22% Similarity=0.264 Sum_probs=182.6
Q ss_pred CCcEEEEecccccCccccccchHHHHhcCC-ceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEE
Q 024300 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGY-DVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT 92 (269)
Q Consensus 14 ~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv-~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 92 (269)
.+.||+|+|+|++|++|..+++++++.+|+ .+..++..+.|++.+...+ ..++++.++++++.+.+.. .++++++
T Consensus 2 ~~~vltiaG~D~~ggaGi~aDi~t~~alg~~~~~v~Ta~t~Qnt~~~~~i--~~~~~~~~~~q~~a~~~d~--~~~~ik~ 77 (448)
T PRK08573 2 IPVALTIAGSDSGGGAGIEADLKTFAALGVHGAVAITSVTAQNTYEVRAI--HDLPPEVVAAQIEAVWEDM--GIDAAKT 77 (448)
T ss_pred CCEEEEEeeeCCCCHHHHHHHHHHHHHcCCeecccceEEEeecCCCceEE--EECCHHHHHHHHHHHHhcC--CCCEEEE
Confidence 368999999999999999999999999996 4454555677777665544 4566666655555543321 2578999
Q ss_pred cccCChhhHHHHHHHHHHHHhcCCCceEEEcccccc-CCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCH
Q 024300 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (269)
Q Consensus 93 G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~-~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~ 171 (269)
|++++. +.+..+++.++++ +++++|||++++ .+..++.++..+.+.+.+++++|+++||..|++.|+|.++.+.
T Consensus 78 G~l~~~---e~~~~i~~~~k~~--g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~ 152 (448)
T PRK08573 78 GMLSNR---EIIEAVAKTVSKY--GFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSV 152 (448)
T ss_pred CCcCCH---HHHHHHHHHHHHc--CCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCH
Confidence 998763 5566677778877 899999999984 4444455565555544588999999999999999999888788
Q ss_pred HHHHHHHHHHHh-cCCCeEEEEeeecC---Cc-EEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhcc
Q 024300 172 ADGREACKILHA-AGPAKVVITSINID---GN-LFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNK 245 (269)
Q Consensus 172 ~~~~~a~~~l~~-~g~~~Vvvt~g~~~---g~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~~ 245 (269)
++.+++++.|++ +|++.|++|+|+.. +. +++.. ++.++++.++++ +|++||||+|+|+|+++|++
T Consensus 153 ~d~~~aa~~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~---------~~~~~~~~~~v~~~dt~GAGDaFsAa~aa~l~~ 223 (448)
T PRK08573 153 EDARKAAKYIVEELGAEAVVVKGGHLEGEEAVDVLYHN---------GTFREFRAPRVESGCTHGTGCSFSAAIAAGLAK 223 (448)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCceeEEEEEC---------CeEEEEEecCcCCCCCCChHHHHHHHHHHHHHc
Confidence 889999999984 89999999998422 32 33322 244567777777 68999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHhhc
Q 024300 246 YRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 246 ~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
|+++++|+++|+.++...+++
T Consensus 224 -G~~l~eAl~~A~~~~~~al~~ 244 (448)
T PRK08573 224 -GLDPEEAIKTAKKFITMAIKY 244 (448)
T ss_pred -CCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998874
No 22
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=100.00 E-value=8.6e-32 Score=249.08 Aligned_cols=242 Identities=21% Similarity=0.281 Sum_probs=189.2
Q ss_pred cCCCCCCCcEEEEecccccCccccccchHHHHhcCCceeee-ceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCcc
Q 024300 8 LALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPI-HSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLY 86 (269)
Q Consensus 8 ~~~~~~~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (269)
..++..+++||+|+|+|++|++|..++++++.++|+....+ +..+.|++.++..+ ..++.+.++++++.+.+.. .
T Consensus 3 ~~~~~~~~~vL~IaGsD~~gGAGi~aDl~t~~a~G~~~~~v~Talt~q~t~~v~~~--~~~~~~~~~~ql~~~~~d~--~ 78 (502)
T PLN02898 3 TESPMKVPHVLTVAGSDSGAGAGIQADIKACAARGVYCTTAITAVTAQNTVGVQGV--HAVPLDFVAEQLKSVLSDM--P 78 (502)
T ss_pred cCCCCCCCeEEEEeeeCCCcHHHHHHHHHHHHHcCCEecceeeEEEEEcCCcccee--eeCCHHHHHHHHHHHHhCC--C
Confidence 44566689999999999999999999999999999644444 55566676676543 4566676777666665422 4
Q ss_pred ccEEEEcccCChhhHHHHHHHHHHHHhcCCCc-eEEEccccc-cCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhh
Q 024300 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNL-IYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (269)
Q Consensus 87 ~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~-~vv~Dp~~~-~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~ 164 (269)
+++|++|++++.+..+.+. +.+++. +. ++|+||++. +.+..+..++..+.+++.+++++|+++||..|++.|+
T Consensus 79 ~~aik~G~l~~~~~i~~i~---~~l~~~--~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~ 153 (502)
T PLN02898 79 VDVVKTGMLPSAEIVKVLC---QALKEF--PVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALL 153 (502)
T ss_pred CCEEEECCcCCHHHHHHHH---HHHHhC--CCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHh
Confidence 7899999998865555554 444544 45 599999987 4666777778888887568999999999999999999
Q ss_pred CCC-CCCHHHHHHHHHHHHhcCCCeEEEEeeecCC-----cEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHH
Q 024300 165 GFR-IGSEADGREACKILHAAGPAKVVITSINIDG-----NLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTA 237 (269)
Q Consensus 165 g~~-~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a 237 (269)
|.. ..+.+++.++++.|.++|++.|+||+|+..+ .+++.+ ++.+.++.++++ .+++|+||+|+|
T Consensus 154 g~~~~~~~~~~~~~a~~l~~~G~~~VvItgg~~~~~~~~~~~l~~~---------~~~~~~~~~~i~~~~t~GaGD~fsa 224 (502)
T PLN02898 154 GGDPLETVADMRSAAKELHKLGPRYVLVKGGHLPDSLDAVDVLYDG---------TEFHELRSSRIKTRNTHGTGCTLAS 224 (502)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCcceEEEEcC---------CeEEEEecceeCCCCCCchhhhHHH
Confidence 853 4566788899999999999999999985321 234322 245567777777 589999999999
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 238 LLLGWSNKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 238 ~~~~~l~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
+|++++++ |+++++|+++|+.++.++|+++
T Consensus 225 aiaa~l~~-G~~l~eAv~~A~~~v~~ai~~~ 254 (502)
T PLN02898 225 CIAAELAK-GSDMLSAVKVAKRYVETALEYS 254 (502)
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999999999999864
No 23
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=100.00 E-value=9.7e-32 Score=249.79 Aligned_cols=242 Identities=20% Similarity=0.235 Sum_probs=192.2
Q ss_pred CCCCCCCcEEEEecccccCccccccchHHHHhcCC-ceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccc
Q 024300 9 ALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGY-DVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYY 87 (269)
Q Consensus 9 ~~~~~~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv-~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (269)
++...+++||+|+|+|++|++|+.+++++++.+|+ .+..++.++++++.|+..+ ..++.+.+.++++.+.+.. .+
T Consensus 24 ~~~~~~~~vl~Iag~D~sGgaGi~aDl~t~~a~g~~~~~v~Talt~q~t~~v~~v--~~~~~~~i~~ql~~l~~d~--~~ 99 (530)
T PRK14713 24 ASAAATPRVLSIAGTDPSGGAGIQADLKSIAAAGGYGMAVITALVAQNTRGVRAV--HVPPADFLRAQLDAVSDDV--TV 99 (530)
T ss_pred cCCCCCCeEEEEeCcCCCcHHHHHHHHHHHHHcCCeecchhheEeeecCcceeee--ccCCHHHHHHHHHHHHhCC--CC
Confidence 45567889999999999999999999999999996 5555555666666675443 4567788888887776522 58
Q ss_pred cEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccc-cCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCC
Q 024300 88 THLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (269)
Q Consensus 88 ~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~-~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~ 166 (269)
++|++|++.+.+..+.+.++++..+ ..+||+||+++ +.|..+..++..+.+++ +++++|+++||..|++.|+|.
T Consensus 100 ~aikiG~l~s~~~i~~v~~~l~~~~----~~~vVlDPv~~~~~G~~l~~~~~~~~~~~-Ll~~advItPN~~Ea~~Ltg~ 174 (530)
T PRK14713 100 DAVKIGMLGDAEVIDAVRTWLAEHR----PPVVVLDPVMVATSGDRLLEEDAEAALRE-LVPRADLITPNLPELAVLLGE 174 (530)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhCC----CCCEEECCcccCCCCCCCCCHHHHHHHHH-HhhhhheecCChHHHHHHhCC
Confidence 9999999999888888888887653 34799999997 45544557788888887 999999999999999999997
Q ss_pred CC-CCHHHHHHHHHHHHhcCCCeEEEEeeecCC----cEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHH
Q 024300 167 RI-GSEADGREACKILHAAGPAKVVITSINIDG----NLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLL 240 (269)
Q Consensus 167 ~~-~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~ 240 (269)
++ .+.+++.++++.|.+.+...|+||+|+..+ .+++... ++.+.++.++++ ++++|+||+|+|+|+
T Consensus 175 ~~~~~~~d~~~aa~~L~~~~g~~VvItgG~~~~~~~~d~~~~~~--------~~~~~~~~~~v~~~~t~GaGD~fsaala 246 (530)
T PRK14713 175 PPATTWEEALAQARRLAAETGTTVLVKGGHLDGQRAPDALVGPD--------GAVTEVPGPRVDTRNTHGTGCSLSSALA 246 (530)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCCCCcceEEEEcCC--------CeEEEEeeeeeCCCCCCcHHHHHHHHHH
Confidence 65 367788888899987666799999985221 2333211 235567777777 589999999999999
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 241 GWSNKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 241 ~~l~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
++|++ |.++++|+++|+.++++.++..
T Consensus 247 a~La~-G~~l~eAv~~A~~~v~~~i~~a 273 (530)
T PRK14713 247 TRLGR-GGDWAAALRWATAWLHGAIAAG 273 (530)
T ss_pred HHHHC-CCCHHHHHHHHHHHHHHHHHhC
Confidence 99998 9999999999999999998753
No 24
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=1.5e-31 Score=256.91 Aligned_cols=238 Identities=18% Similarity=0.180 Sum_probs=192.6
Q ss_pred CCCCcEEEEecccccCccccccchHHHHhcC-CceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEE
Q 024300 12 SETGRVLSIQSHTVQGYVGNKSAVFPLQLLG-YDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHL 90 (269)
Q Consensus 12 ~~~~~vl~i~g~~~~g~~G~~a~~~~l~~~G-v~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 90 (269)
+.+++||+|+|+|++|++|+.++++++.++| ..++.++..++|++.|+..+ ..++++.+.++++.+.+.. .+++|
T Consensus 239 ~~~~~vLtIaGsD~sggAGi~aDlkt~~alg~~~~~viTaltaQn~~~v~~v--~~~~~~~v~~Ql~~~~~d~--~~~ai 314 (755)
T PRK09517 239 PSAPRVLSIAGTDPTGGAGIQADLKSIAAGGGYGMCVVTALVAQNTHGVNTI--HTPPLTFLEEQLEAVFSDV--TVDAV 314 (755)
T ss_pred CCCCeEEEEeccCCCcHHHHHHHHHHHHHcCCcccchheeEeeEcccceeEE--eeCCHHHHHHHHHHHHcCC--CCCEE
Confidence 4568999999999999999999999999999 68888888888898887654 6788889988888877633 47899
Q ss_pred EEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccc-cCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCC-C
Q 024300 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR-I 168 (269)
Q Consensus 91 ~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~-~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~-~ 168 (269)
++|++.+.+..+.+.+.+++. . +.+||+||+++ .+|..+..++..+.+++ +++++|+|+||..|++.|+|.. .
T Consensus 315 KiGmL~s~e~v~~i~~~l~~~--~--~~~vVlDPV~~~~sG~~l~~~~~~~~l~~-Llp~adlItPN~~Ea~~L~g~~~~ 389 (755)
T PRK09517 315 KLGMLGSADTVDLVASWLGSH--E--HGPVVLDPVMVATSGDRLLDADATEALRR-LAVHVDVVTPNIPELAVLCGEAPA 389 (755)
T ss_pred EECCCCCHHHHHHHHHHHHhC--C--CCCEEEecccccCCCCCCCCHHHHHHHHH-HhCcccCccCCHHHHHHHhCCCCC
Confidence 999998876666665555433 2 56899999997 45555567777777776 9999999999999999999953 4
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEeeec-----CCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHh
Q 024300 169 GSEADGREACKILHAAGPAKVVITSINI-----DGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGW 242 (269)
Q Consensus 169 ~~~~~~~~a~~~l~~~g~~~Vvvt~g~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~ 242 (269)
.+.++..++++.|.+.+...|+||+|+. .+.++..+ +..+.++.++++ ++++|+||+|+|+|+++
T Consensus 390 ~~~~d~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~~---------~~~~~~~~~~v~~~~t~GaGDtfsaaiaa~ 460 (755)
T PRK09517 390 ITMDEAIAQARGFARTHGTIVIVKGGHLTGDLADNAVVRPD---------GSVHQVENPRVNTTNSHGTGCSLSAALATL 460 (755)
T ss_pred CCHHHHHHHHHHHHHhcCCEEEEcCCcCCCCccceEEEeCC---------CeEEEEeecccCCCCCcChHHHHHHHHHHH
Confidence 5677888889999876556899999852 23333211 235567788887 58999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 243 SNKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 243 l~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
|++ |+++++|+++|+.++.++|+++
T Consensus 461 La~-G~sl~eAv~~A~~~v~~~i~~a 485 (755)
T PRK09517 461 IAA-GESVEKALEWATRWLNEALRHA 485 (755)
T ss_pred HHC-CCCHHHHHHHHHHHHHHHHHhc
Confidence 999 9999999999999999999874
No 25
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.94 E-value=8.8e-26 Score=192.14 Aligned_cols=225 Identities=21% Similarity=0.198 Sum_probs=178.4
Q ss_pred CcEEEEecc--cccCcccccc---chHHHHhcCCceeeeceEE-------eecC-CC-CCCc--ceeecCHHHHHHHHHH
Q 024300 15 GRVLSIQSH--TVQGYVGNKS---AVFPLQLLGYDVDPIHSVQ-------FSNH-TG-YPTF--KGQVLNGQQLCDLIEG 78 (269)
Q Consensus 15 ~~vl~i~g~--~~~g~~G~~a---~~~~l~~~Gv~~~~i~~~~-------~~~~-~g-~~~~--~~~~~~~~~~~~~~~~ 78 (269)
.+||.-.|. ...|++|... ..+.|+..|+...+++... .... .+ .+++ .|..+++++++.+++.
T Consensus 43 a~vL~~lG~~~~a~GflGg~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~ 122 (310)
T COG1105 43 ARVLKDLGIPVTALGFLGGFTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPGPEISEAELEQFLEQ 122 (310)
T ss_pred HHHHHHcCCCceEEEecCCccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCCCCCCHHHHHHHHHH
Confidence 345555554 3788888755 5567899999888885321 1111 11 2233 4678999999999888
Q ss_pred HHhCCCcccc-EEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCH
Q 024300 79 LEANNLLYYT-HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQ 157 (269)
Q Consensus 79 ~~~~~~~~~~-~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~ 157 (269)
+++..- ..| +++.|++|+....+.+.++++.++++ +++|++|... +. +.+.+-..+++|+||.
T Consensus 123 ~~~~l~-~~d~VvlsGSlP~g~~~d~y~~li~~~~~~--g~~vilD~Sg---------~~----L~~~L~~~P~lIKPN~ 186 (310)
T COG1105 123 LKALLE-SDDIVVLSGSLPPGVPPDAYAELIRILRQQ--GAKVILDTSG---------EA----LLAALEAKPWLIKPNR 186 (310)
T ss_pred HHHhcc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHhc--CCeEEEECCh---------HH----HHHHHccCCcEEecCH
Confidence 876221 245 68899999999999999999999998 9999999622 12 2222333589999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHH
Q 024300 158 FEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMT 236 (269)
Q Consensus 158 ~E~~~l~g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~ 236 (269)
+|++.++|.+..+.+|..++++.++..|+++|+|++| ++|++++.. +..++...|+++ ++++||||++.
T Consensus 187 ~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVSlG-~~Gal~~~~---------~~~~~a~~p~~~vvstVGAGDs~V 256 (310)
T COG1105 187 EELEALFGRELTTLEDVIKAARELLAEGIENVIVSLG-ADGALLVTA---------EGVYFASPPKVQVVSTVGAGDSMV 256 (310)
T ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHCCCCEEEEEec-CcccEEEcc---------CCeEEEeCCCcceecCcCchHHHH
Confidence 9999999999999899999999999999999999998 799999975 267777777777 59999999999
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHhh
Q 024300 237 ALLLGWSNKYRDNLDIAAELAVSSLQVLLL 266 (269)
Q Consensus 237 a~~~~~l~~~g~~~~~a~~~A~~~~~~~l~ 266 (269)
|+|++++.+ ++++++++++|+++......
T Consensus 257 AGf~~~~~~-~~~~e~~l~~avA~g~a~~~ 285 (310)
T COG1105 257 AGFLAGLLK-GKSLEEALRFAVACGAAAAS 285 (310)
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHHhh
Confidence 999999999 99999999999999988765
No 26
>PTZ00292 ribokinase; Provisional
Probab=99.92 E-value=3.3e-23 Score=182.44 Aligned_cols=217 Identities=18% Similarity=0.248 Sum_probs=154.6
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEE---------eec-CCCCCCc---ce--eecCHHHHHHHHHHHHhCCCc
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQ---------FSN-HTGYPTF---KG--QVLNGQQLCDLIEGLEANNLL 85 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~---------~~~-~~g~~~~---~~--~~~~~~~~~~~~~~~~~~~~~ 85 (269)
..|.+|.|. +.+.|++.||+++++.... ..+ ..|-..+ .+ ..++++.++...+.+.+.
T Consensus 71 ~is~vG~D~~g~~i~~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~i~~~--- 147 (326)
T PTZ00292 71 MVGMVGTDGFGSDTIKNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVIIPGANNALTPQMVDAQTDNIQNI--- 147 (326)
T ss_pred EEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEeCCccccCCHHHHHHHHHHhhhh---
Confidence 567777764 5667899999998874321 001 1121111 11 245666666555445430
Q ss_pred cccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhC
Q 024300 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (269)
Q Consensus 86 ~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g 165 (269)
.+.+.+.. ....+.+.++++.++++ ++++++||+++.. .+ . .+.+.+ +++++|+++||+.|++.++|
T Consensus 148 -~~~~~~~~---~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~--~~-~---~~~~~~-~l~~~dii~~n~~E~~~l~g 214 (326)
T PTZ00292 148 -CKYLICQN---EIPLETTLDALKEAKER--GCYTVFNPAPAPK--LA-E---VEIIKP-FLKYVSLFCVNEVEAALITG 214 (326)
T ss_pred -CCEEEECC---CCCHHHHHHHHHHHHHc--CCEEEEECCCCcc--cc-c---cccHHH-HHhcCCEEcCCHHHHHHHhC
Confidence 34344322 12345666788888887 8999999976532 11 1 123344 78899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhc
Q 024300 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSN 244 (269)
Q Consensus 166 ~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~ 244 (269)
....+.+++.++++.+++.+++.|++|.| .+|++++... +..++++.+.++ +||+||||+|.|+|+++++
T Consensus 215 ~~~~~~~~~~~~~~~l~~~g~~~vvvT~G-~~Ga~~~~~~--------~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~ 285 (326)
T PTZ00292 215 MEVTDTESAFKASKELQQLGVENVIITLG-ANGCLIVEKE--------NEPVHVPGKRVKAVDTTGAGDCFVGSMAYFMS 285 (326)
T ss_pred CCCCChhHHHHHHHHHHHcCCCeEEEEeC-CCcEEEEeCC--------CceEEccCCccccCCCcchHHHHHHHHHHHHH
Confidence 77666677778888888889999999998 7899887541 134667766666 6999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhc
Q 024300 245 KYRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 245 ~~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
+ |+++++|+++|++++...+++
T Consensus 286 ~-g~~~~~al~~a~a~Aa~~v~~ 307 (326)
T PTZ00292 286 R-GKDLKESCKRANRIAAISVTR 307 (326)
T ss_pred C-CCCHHHHHHHHHHHHHHHcCC
Confidence 8 999999999999999988775
No 27
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.91 E-value=4.7e-23 Score=175.27 Aligned_cols=225 Identities=20% Similarity=0.127 Sum_probs=152.7
Q ss_pred cCCCCCCCcEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCC-----CCCcceeecCHHHHHHHHHHHHhC
Q 024300 8 LALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTG-----YPTFKGQVLNGQQLCDLIEGLEAN 82 (269)
Q Consensus 8 ~~~~~~~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~ 82 (269)
..||++.|+||+|+|++.++++|..+++..++ .|.+..++-+.. +..+ .+++....+..+..+.+.+.+.
T Consensus 2 ~~hK~~~g~vl~i~Gs~~~~GA~~la~~~a~~-~G~g~vt~~~~~--~~~~~~~~~~pe~i~~~~~~~~~~~~~~~~~-- 76 (254)
T cd01171 2 DSHKGSRGRVLVIGGSRGYTGAAYLAALAALR-AGAGLVTVATPP--EAAAVIKSYSPELMVHPLLETDIEELLELLE-- 76 (254)
T ss_pred CCCCcCCCeEEEEeCCCCCccHHHHHHHHHHH-HccCEEEEEECH--hhHHHHHhcCceeeEecccccchHHHHhhhc--
Confidence 46899999999999999999999999999887 466554443322 2111 1222112222222223332232
Q ss_pred CCccccEEEEcc-cCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHH
Q 024300 83 NLLYYTHLLTGY-IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAE 161 (269)
Q Consensus 83 ~~~~~~~i~~G~-l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~ 161 (269)
.++++++|+ +++. +.+..+++.++++ ++|+|+||.... +..... .. .+.+.+++++||..|++
T Consensus 77 ---~~d~v~ig~gl~~~---~~~~~i~~~~~~~--~~pvVlDa~~~~----~~~~~~-~~---~~~~~~~iltPn~~E~~ 140 (254)
T cd01171 77 ---RADAVVIGPGLGRD---EEAAEILEKALAK--DKPLVLDADALN----LLADEP-SL---IKRYGPVVLTPHPGEFA 140 (254)
T ss_pred ---cCCEEEEecCCCCC---HHHHHHHHHHHhc--CCCEEEEcHHHH----HhhcCh-hh---hccCCCEEECCCHHHHH
Confidence 367888888 6553 4566777788876 899999985431 011110 00 14678999999999999
Q ss_pred HhhCCCCCC-HHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHH
Q 024300 162 QLTGFRIGS-EADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALL 239 (269)
Q Consensus 162 ~l~g~~~~~-~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~ 239 (269)
.|+|.+..+ .++..++++++.+++...|++|+ .+.+++.. ++.+.++....+ .+++|+||+|+|.+
T Consensus 141 ~L~g~~~~~~~~~~~~~a~~l~~~~~~~vvlkG---~~~~i~~~---------~~~~~~~~~~~~~~~~~GaGD~lag~i 208 (254)
T cd01171 141 RLLGALVEEIQADRLAAAREAAAKLGATVVLKG---AVTVIADP---------DGRVYVNPTGNPGLATGGSGDVLAGII 208 (254)
T ss_pred HHhCCChhhhhhHHHHHHHHHHHHcCcEEEEcC---CCCEEECC---------CCcEEEECCCCcccccCchHHHHHHHH
Confidence 999986543 33566788888888765666554 35666542 133445555555 58999999999999
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHHhh
Q 024300 240 LGWSNKYRDNLDIAAELAVSSLQVLLL 266 (269)
Q Consensus 240 ~~~l~~~g~~~~~a~~~A~~~~~~~l~ 266 (269)
++.+++ |+++.+|+++|+.+...+-+
T Consensus 209 aa~la~-g~~~~eA~~~A~~~~~~a~~ 234 (254)
T cd01171 209 AALLAQ-GLSPLEAAALAVYLHGLAGD 234 (254)
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHHHHH
Confidence 999999 99999999999887776654
No 28
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.91 E-value=6.2e-23 Score=177.73 Aligned_cols=209 Identities=24% Similarity=0.271 Sum_probs=152.8
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEEeecCCC----------CCCc---ce--eecCHHHHHHHHHHHHhCCCc
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTG----------YPTF---KG--QVLNGQQLCDLIEGLEANNLL 85 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g----------~~~~---~~--~~~~~~~~~~~~~~~~~~~~~ 85 (269)
..|.+|.|. +++.|+++||+++++....- ..|+ -..+ .+ ..++.++++...+.+..
T Consensus 55 ~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~-~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 129 (292)
T cd01174 55 MIGAVGDDAFGDELLENLREEGIDVSYVEVVVG-APTGTAVITVDESGENRIVVVPGANGELTPADVDAALELIAA---- 129 (292)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCceEEEEcCC-CCceeEEEEEcCCCceEEEEeCCCCCCCCHHHHHHHHHhccc----
Confidence 566777654 56678999999998843210 1122 1111 01 13445566555444544
Q ss_pred cccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhC
Q 024300 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (269)
Q Consensus 86 ~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g 165 (269)
++.+.+.. ....+.+..+++.++++ ++++++||..... . +. .+++++|+++||+.|++.|++
T Consensus 130 -~~~v~~~~---~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~-------~----~~-~~~~~~dil~~n~~E~~~l~~ 191 (292)
T cd01174 130 -ADVLLLQL---EIPLETVLAALRAARRA--GVTVILNPAPARP-------L----PA-ELLALVDILVPNETEAALLTG 191 (292)
T ss_pred -CCEEEEeC---CCCHHHHHHHHHHHHhc--CCEEEEeCCCcCc-------C----cH-HHHhhCCEEeeCHHHHHHHhC
Confidence 44444432 12345677888899988 8999999965421 0 12 278899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhc
Q 024300 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSN 244 (269)
Q Consensus 166 ~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~ 244 (269)
....+.++++++++.+.+.|++.|++|.| .+|++++.+ ++.++++.++++ +|++||||+|+|+|+++++
T Consensus 192 ~~~~~~~~~~~~~~~l~~~g~~~vvvt~G-~~G~~~~~~---------~~~~~~~~~~~~~vdt~GaGD~F~ag~l~~l~ 261 (292)
T cd01174 192 IEVTDEEDAEKAARLLLAKGVKNVIVTLG-AKGALLASG---------GEVEHVPAFKVKAVDTTGAGDTFIGALAAALA 261 (292)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeC-CCceEEEeC---------CceEEecCCCcccCCCCCcHHHHHHHHHHHHH
Confidence 87766777888899999999999999998 689988754 245567766666 6999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhc
Q 024300 245 KYRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 245 ~~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
+ |+++++|+++|++++...+++
T Consensus 262 ~-g~~~~~al~~a~~~Aa~~~~~ 283 (292)
T cd01174 262 R-GLSLEEAIRFANAAAALSVTR 283 (292)
T ss_pred c-CCCHHHHHHHHHHHHHHHhcC
Confidence 8 999999999999999998875
No 29
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.91 E-value=1.7e-22 Score=176.03 Aligned_cols=217 Identities=22% Similarity=0.208 Sum_probs=153.5
Q ss_pred ccCccccc---cchHHHHhcCCceeeeceEE-------eecCCCCCC-c--ceeecCHHHHHHHHHHHHhCCCccccEE-
Q 024300 25 VQGYVGNK---SAVFPLQLLGYDVDPIHSVQ-------FSNHTGYPT-F--KGQVLNGQQLCDLIEGLEANNLLYYTHL- 90 (269)
Q Consensus 25 ~~g~~G~~---a~~~~l~~~Gv~~~~i~~~~-------~~~~~g~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i- 90 (269)
..|.+|.| ..++.|++.||+++.+.... +.+..|... + .+..++.++++.+.+.+.+. +-.++.+
T Consensus 54 ~is~vG~D~g~~~~~~L~~~gId~~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~v~ 132 (304)
T TIGR03828 54 ALGFLGGFTGDFIEALLREEGIKTDFVRVPGETRINVKIKEPSGTETKLNGPGPEISEEELEALLEKLRAQ-LAEGDWLV 132 (304)
T ss_pred EEEEecCchhHHHHHHHHHCCCcceEEECCCCCeeeEEEEeCCCCEEEEECCCCCCCHHHHHHHHHHHHHh-ccCCCEEE
Confidence 34555544 35668899999998885421 011122111 1 12235566666655444321 1124543
Q ss_pred EEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCC
Q 024300 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGS 170 (269)
Q Consensus 91 ~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~ 170 (269)
+.|+.+.....+.+..+++.++++ ++++++||+.. . +.+.+...+|+++||+.|++.|++....+
T Consensus 133 ~~g~~~~~~~~~~~~~~~~~~~~~--~~~v~~D~~~~---------~----~~~~~~~~~~i~~~n~~E~~~l~g~~~~~ 197 (304)
T TIGR03828 133 LSGSLPPGVPPDFYAELIALAREK--GAKVILDTSGE---------A----LRDGLKAKPFLIKPNDEELEELFGRELKT 197 (304)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHc--CCEEEEECChH---------H----HHHHHhcCCcEECcCHHHHHHHhCCCCCC
Confidence 446655434456778888999887 89999998532 1 11113346799999999999999987767
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhccCCCC
Q 024300 171 EADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDN 249 (269)
Q Consensus 171 ~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~~~g~~ 249 (269)
.+++.++++.+.+.|++.|++|.| .+|++++.. ++.++++.+.++ +||+||||+|+|+|+++|.+ |++
T Consensus 198 ~~~~~~~~~~l~~~g~~~vvvT~G-~~G~~~~~~---------~~~~~~~~~~~~vvDttGAGDaF~a~~l~~l~~-g~~ 266 (304)
T TIGR03828 198 LEEIIEAARELLDLGAENVLISLG-ADGALLVTK---------EGALFAQPPKGEVVSTVGAGDSMVAGFLAGLES-GLS 266 (304)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccC-CCCcEEEcC---------CceEEEeCCCccccCCcChHHHHHHHHHHHHHc-CCC
Confidence 788888889999999999999998 689988753 245566666666 69999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 024300 250 LDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 250 ~~~a~~~A~~~~~~~l~~~ 268 (269)
+++|+++|++++...+++.
T Consensus 267 ~~~a~~~a~~~Aa~~~~~~ 285 (304)
T TIGR03828 267 LEEALRLAVAAGSAAAFSE 285 (304)
T ss_pred HHHHHHHHHHHHHHHhcCc
Confidence 9999999999999988753
No 30
>PRK11142 ribokinase; Provisional
Probab=99.91 E-value=6.8e-23 Score=178.74 Aligned_cols=209 Identities=22% Similarity=0.276 Sum_probs=152.7
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEEeecCCC----------CCCc---ce--eecCHHHHHHHHHHHHhCCCc
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTG----------YPTF---KG--QVLNGQQLCDLIEGLEANNLL 85 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g----------~~~~---~~--~~~~~~~~~~~~~~~~~~~~~ 85 (269)
..|.+|.|. +.+.|+++||+++++.... ..+|+ -..+ .+ ..+++++++...+.+..
T Consensus 58 ~~~~vG~D~~g~~i~~~L~~~gV~~~~i~~~~-~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~l~~---- 132 (306)
T PRK11142 58 FIACVGDDSIGESMRQQLAKDGIDTAPVSVIK-GESTGVALIFVNDEGENSIGIHAGANAALTPALVEAHRELIAN---- 132 (306)
T ss_pred EEEEECCChhHHHHHHHHHHcCCChhhEEEcC-CCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHHHHHhhhcc----
Confidence 577777764 5678899999988775332 01122 1111 11 24556666655555554
Q ss_pred cccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhC
Q 024300 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (269)
Q Consensus 86 ~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g 165 (269)
++.+.+... ...+.+.++++.++++ ++++++||..... .. . .+++++|+++||++|+..++|
T Consensus 133 -~~~v~~~~~---~~~~~~~~~~~~a~~~--g~~v~~d~~~~~~----~~-------~-~~~~~~dil~~n~~Ea~~l~g 194 (306)
T PRK11142 133 -ADALLMQLE---TPLETVLAAAKIAKQH--GTKVILNPAPARE----LP-------D-ELLALVDIITPNETEAEKLTG 194 (306)
T ss_pred -CCEEEEeCC---CCHHHHHHHHHHHHHc--CCEEEEECCCCcc----cC-------H-HHHhhCCEEcCCHHHHHHHhC
Confidence 344443321 2346677888889887 8999999964321 11 1 278899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhc
Q 024300 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSN 244 (269)
Q Consensus 166 ~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~ 244 (269)
....+.++..++++.+.+.|++.|++|.| .+|+++..+ ++.++.+.+.++ +||+||||+|+|+|+++++
T Consensus 195 ~~~~~~~~~~~~~~~l~~~g~~~vvvt~G-~~G~~~~~~---------~~~~~~~~~~v~vvDt~GAGDaF~Agfi~~l~ 264 (306)
T PRK11142 195 IRVEDDDDAAKAAQVLHQKGIETVLITLG-SRGVWLSEN---------GEGQRVPGFRVQAVDTIAAGDTFNGALVTALL 264 (306)
T ss_pred CCCCChHHHHHHHHHHHHhCCCeEEEEEC-CCcEEEEeC---------CcceeccCCCcccccCCCchhHHHHHHHHHHH
Confidence 87666677788888888899999999998 689987653 245567776666 6999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhc
Q 024300 245 KYRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 245 ~~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
+ |+++++|+++|++++...+++
T Consensus 265 ~-g~~~~~al~~a~~~Aa~~~~~ 286 (306)
T PRK11142 265 E-GKPLPEAIRFAHAAAAIAVTR 286 (306)
T ss_pred C-CCCHHHHHHHHHHHHHHHcCC
Confidence 8 999999999999999988765
No 31
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.91 E-value=3.7e-23 Score=179.23 Aligned_cols=218 Identities=21% Similarity=0.219 Sum_probs=150.5
Q ss_pred cccCcccccc----chHHHHhcCCceeeeceEEeecCC----------CCCCc-c--e----eecCHHHHHHHHHHHHhC
Q 024300 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHT----------GYPTF-K--G----QVLNGQQLCDLIEGLEAN 82 (269)
Q Consensus 24 ~~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~----------g~~~~-~--~----~~~~~~~~~~~~~~~~~~ 82 (269)
...|.+|.|. .++.|+++||++.++.... ...| |-..+ . + ..++.++++ .+.+.+
T Consensus 49 ~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~- 124 (294)
T cd01166 49 ALVTAVGDDPFGRFILAELRREGVDTSHVRVDP-GRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLD--EAALAG- 124 (294)
T ss_pred EEEEecCCCHHHHHHHHHHHHcCCCCceEEEeC-CCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCC--HHHHhC-
Confidence 3577777654 5677899999999885332 0111 11111 0 0 112222322 233444
Q ss_pred CCccccEEE-EcccCChhh--HHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHH
Q 024300 83 NLLYYTHLL-TGYIGSVSF--LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE 159 (269)
Q Consensus 83 ~~~~~~~i~-~G~l~~~~~--~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E 159 (269)
.+.+. .|+.+.... .+.+.+++++++++ ++++++||+++.. .|..+...+.+++ +++++|+++||+.|
T Consensus 125 ----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~D~~~~~~--~~~~~~~~~~~~~-~~~~~dil~~n~~E 195 (294)
T cd01166 125 ----ADHLHLSGITLALSESAREALLEALEAAKAR--GVTVSFDLNYRPK--LWSAEEAREALEE-LLPYVDIVLPSEEE 195 (294)
T ss_pred ----CCEEEEcCcchhhCHHHHHHHHHHHHHHHHc--CCEEEECCCCcch--hcChHHHHHHHHH-HHHhCCEEEcCHHH
Confidence 44443 344433222 47788899999887 8999999987532 1212223344444 88999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHH
Q 024300 160 AEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTAL 238 (269)
Q Consensus 160 ~~~l~g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~ 238 (269)
++.+++... .++..+.++.+ ++|++.|++|+| .+|++++.+ ++.+++++++++ +||+||||+|+|+
T Consensus 196 ~~~l~~~~~--~~~~~~~~~~l-~~g~~~viit~G-~~G~~~~~~---------~~~~~~~~~~~~~vdt~GAGD~f~a~ 262 (294)
T cd01166 196 AEALLGDED--PTDAAERALAL-ALGVKAVVVKLG-AEGALVYTG---------GGRVFVPAYPVEVVDTTGAGDAFAAG 262 (294)
T ss_pred HHHHhCCCC--chhHHHHHHhh-cCCccEEEEEEc-CCceEEEEC---------CceEEeCCCCcccccCCCchHHHHHH
Confidence 999998643 34555666666 689999999998 689888754 246677777666 6999999999999
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 239 LLGWSNKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 239 ~~~~l~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
|++++++ |+++++|+++|+++++..+++.
T Consensus 263 ~~~~l~~-g~~~~~a~~~a~~~aa~~i~~~ 291 (294)
T cd01166 263 FLAGLLE-GWDLEEALRFANAAAALVVTRP 291 (294)
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHHHhcC
Confidence 9999998 9999999999999999998864
No 32
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.90 E-value=2.9e-22 Score=175.13 Aligned_cols=207 Identities=18% Similarity=0.186 Sum_probs=149.7
Q ss_pred chHHHHhcCCceeeeceEE--------eecCCCCCC-c--ceeecCHHHHHHHHHHHHhCCCccccE-EEEcccCChhhH
Q 024300 34 AVFPLQLLGYDVDPIHSVQ--------FSNHTGYPT-F--KGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFL 101 (269)
Q Consensus 34 ~~~~l~~~Gv~~~~i~~~~--------~~~~~g~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~G~l~~~~~~ 101 (269)
+++.|++.||++..+.... ..+..|-.. + .+..++.++++.+.+.+.... ..+. +..|+++.....
T Consensus 69 i~~~l~~~gv~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~i~g~~~~~~~~ 146 (309)
T PRK10294 69 LVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGAALNEDEFRQLEEQVLEIE--SGAILVISGSLPPGVKL 146 (309)
T ss_pred HHHHHHHcCCCceEEECCCCCeeeEEEEEcCCCcEEEEECCCCCCCHHHHHHHHHHHHhcC--CCCEEEEeCCCCCCCCH
Confidence 5668899999988885421 001122111 0 123456666666544433211 2343 455777655556
Q ss_pred HHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCHHHHHHHHHHH
Q 024300 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKIL 181 (269)
Q Consensus 102 ~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~~~~~~a~~~l 181 (269)
+.+.++++.++++ ++++++||+.. ...+ . ..++++|+++||++|+..|++....+.++++++++.+
T Consensus 147 ~~~~~~~~~a~~~--g~~v~~D~~~~---------~~~~-~--~~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~~l 212 (309)
T PRK10294 147 EKLTQLISAAQKQ--GIRCIIDSSGD---------ALSA-A--LAIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQEL 212 (309)
T ss_pred HHHHHHHHHHHHc--CCeEEEeCCCH---------HHHH-H--HhcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 7888899999987 99999998421 1111 1 1256899999999999999998766677888899999
Q ss_pred HhcC-CCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024300 182 HAAG-PAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVS 259 (269)
Q Consensus 182 ~~~g-~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~~~g~~~~~a~~~A~~ 259 (269)
++.+ ++.|++|.| .+|++++.+ ++.++++.++++ +||+||||+|+|+|++++.+ |+++++|+++|++
T Consensus 213 ~~~~~~~~vvvT~G-~~G~~~~~~---------~~~~~~~~~~v~vvDttGAGDaf~ag~l~~l~~-g~~~~~al~~a~a 281 (309)
T PRK10294 213 VNSGKAKRVVVSLG-PQGALGVDS---------ENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAE-NASLEEMVRFGVA 281 (309)
T ss_pred HHcCCCCEEEEecC-CCceEEEcC---------CccEEEeCCCcccCCCcchHHHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 8877 799999998 689888753 244566666666 69999999999999999998 9999999999999
Q ss_pred HHHHHhhc
Q 024300 260 SLQVLLLL 267 (269)
Q Consensus 260 ~~~~~l~~ 267 (269)
++...+++
T Consensus 282 ~aa~~v~~ 289 (309)
T PRK10294 282 AGSAATLN 289 (309)
T ss_pred HHHHHhcC
Confidence 99988765
No 33
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.90 E-value=7.1e-23 Score=188.00 Aligned_cols=219 Identities=17% Similarity=0.081 Sum_probs=150.2
Q ss_pred cccCcccccc----chHHHHhcCCceeeeceEE-----------------eecCCCCCCc---ce--eecCHHHHH----
Q 024300 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQ-----------------FSNHTGYPTF---KG--QVLNGQQLC---- 73 (269)
Q Consensus 24 ~~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~-----------------~~~~~g~~~~---~~--~~~~~~~~~---- 73 (269)
...|.+|.|. +++.|+++||++..+.... ..+..|-..+ .. .....+.+.
T Consensus 137 ~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~~~l~~ 216 (470)
T PLN02341 137 STIGHVGDEIYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWISKLSA 216 (470)
T ss_pred EEEEEecCcHHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhhhcccH
Confidence 3688888875 5678999999998874321 0011111000 00 011111111
Q ss_pred HHHHHHHhCCCccccEE-EEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCC-hhhHHHHHHhccCCCc
Q 024300 74 DLIEGLEANNLLYYTHL-LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVAS 151 (269)
Q Consensus 74 ~~~~~~~~~~~~~~~~i-~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~-~~~~~~~~~~ll~~~d 151 (269)
...+.+.+ ++++ +.|+.+.....+.+.++++.++++ +++|++||+++... .|.. ++..+.+.+ +++++|
T Consensus 217 ~~~~~l~~-----adiv~lsg~~~~~~~~~~~~~~~~~Ak~~--g~~V~~Dp~~~~~~-~~~~~~~~~~~l~~-~L~~~D 287 (470)
T PLN02341 217 EAKMAIRQ-----SKALFCNGYVFDELSPSAIASAVDYAIDV--GTAVFFDPGPRGKS-LLVGTPDERRALEH-LLRMSD 287 (470)
T ss_pred HHHhhhhc-----CCEEEEeceeCCcCCHHHHHHHHHHHHHc--CCEEEEeCCCcccc-cccChHHHHHHHHH-HHhhCC
Confidence 11223443 3433 345544334467788899999988 99999999876321 1211 222334555 889999
Q ss_pred EEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--CCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCC
Q 024300 152 MLTPNQFEAEQLTGFRIGSEADGREACKILHAAG--PAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYF 228 (269)
Q Consensus 152 ii~pN~~E~~~l~g~~~~~~~~~~~a~~~l~~~g--~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt 228 (269)
+++||++|++.|+|. ++.+++++.|.+.+ .+.|+||.| .+|++++.. ++.+++++++++ +||
T Consensus 288 il~~Ne~Ea~~l~g~-----~~~~~a~~~l~~~g~~~k~VVVTlG-~~Ga~~~~~---------~~~~~vpa~~v~vVDT 352 (470)
T PLN02341 288 VLLLTSEEAEALTGI-----RNPILAGQELLRPGIRTKWVVVKMG-SKGSILVTR---------SSVSCAPAFKVNVVDT 352 (470)
T ss_pred EEEecHHHHHHHhCC-----CCHHHHHHHHHhcCCCCCEEEEeeC-CCCeEEEEC---------CeeEEeCCCCcCCCCC
Confidence 999999999999986 34566777887766 589999998 799998764 245667777777 699
Q ss_pred CCchHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhc
Q 024300 229 TGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 229 ~GaGDaf~a~~~~~l~~~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
+||||+|.|+|++++.+ |+++++|+++|++++...+.+
T Consensus 353 tGAGDaF~Agfl~gll~-G~~l~eal~~A~a~aA~~v~~ 390 (470)
T PLN02341 353 VGCGDSFAAAIALGYIH-NLPLVNTLTLANAVGAATAMG 390 (470)
T ss_pred cCccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHcC
Confidence 99999999999999998 999999999999999887654
No 34
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.90 E-value=1.6e-22 Score=176.17 Aligned_cols=213 Identities=23% Similarity=0.189 Sum_probs=147.9
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEEeecCCCCC--------C-c---c--eeecCHHHHHHHHHHHHhCCCcc
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYP--------T-F---K--GQVLNGQQLCDLIEGLEANNLLY 86 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g~~--------~-~---~--~~~~~~~~~~~~~~~~~~~~~~~ 86 (269)
..|.+|.|. .++.|+++||++..+.... ..|++. . + . ...++.....++.+.+.+. +-.
T Consensus 58 ~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ 134 (304)
T cd01172 58 LLGVVGDDEAGDLLRKLLEKEGIDTDGIVDEG--RPTTTKTRVIARNQQLLRVDREDDSPLSAEEEQRLIERIAER-LPE 134 (304)
T ss_pred EEEEEcCCccHHHHHHHHHhCCCCcceEecCC--CCceEEEEEecCCcEEEEEecCCCCCCCHHHHHHHHHHHHHh-hcc
Confidence 567777764 4567889999887743211 112210 0 0 0 1122333222222221110 113
Q ss_pred ccEEEE-cccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhC
Q 024300 87 YTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (269)
Q Consensus 87 ~~~i~~-G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g 165 (269)
++.+.+ |+.+.....+.+..+++.++++ ++++++||+.+. + ..++++|+++||+.|+..+++
T Consensus 135 ~~~v~~s~~~~~~~~~~~~~~~~~~a~~~--~~~v~~D~~~~~----~-----------~~~~~~d~l~~n~~E~~~l~~ 197 (304)
T cd01172 135 ADVVILSDYGKGVLTPRVIEALIAAAREL--GIPVLVDPKGRD----Y-----------SKYRGATLLTPNEKEAREALG 197 (304)
T ss_pred CCEEEEEcCCCCccCHHHHHHHHHHHHhc--CCCEEEeCCCcc----h-----------hhccCCcEeCCCHHHHHHHhC
Confidence 565554 5443333346677888888887 899999995431 1 167899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHH-hcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhh
Q 024300 166 FRIGSEADGREACKILH-AAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWS 243 (269)
Q Consensus 166 ~~~~~~~~~~~a~~~l~-~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l 243 (269)
....+.++++++++.+. +.|++.|++|.| .+|+++++.. ++.+++++++++ +||+||||+|+|+|+++|
T Consensus 198 ~~~~~~~~~~~~~~~l~~~~g~~~vvvt~G-~~G~~~~~~~--------~~~~~~~~~~~~vvdttGAGDaf~ag~i~~l 268 (304)
T cd01172 198 DEINDDDELEAAGEKLLELLNLEALLVTLG-EEGMTLFERD--------GEVQHIPALAKEVYDVTGAGDTVIATLALAL 268 (304)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCeEEEEcC-CCccEEEcCC--------CcEEEecCCCCCCCCCcCccHHHHHHHHHHH
Confidence 87666677888888776 468999999998 7999988621 256777777776 699999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhc
Q 024300 244 NKYRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 244 ~~~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
.+ |+++++|+++|+++++.++++
T Consensus 269 ~~-g~~~~~al~~a~a~Aa~~~~~ 291 (304)
T cd01172 269 AA-GADLEEAAFLANAAAGVVVGK 291 (304)
T ss_pred Hc-CCCHHHHHHHHHHHhheeeec
Confidence 98 999999999999999987765
No 35
>PTZ00247 adenosine kinase; Provisional
Probab=99.90 E-value=6.8e-23 Score=181.80 Aligned_cols=219 Identities=19% Similarity=0.204 Sum_probs=147.8
Q ss_pred cccCcccccc----chHHHHhcCCceeeeceEEeecCCC---------CCCc---ce--eecCHHHHHHH--HHHHHhCC
Q 024300 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTG---------YPTF---KG--QVLNGQQLCDL--IEGLEANN 83 (269)
Q Consensus 24 ~~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g---------~~~~---~~--~~~~~~~~~~~--~~~~~~~~ 83 (269)
...|.+|.|. +++.|+++||++.++.... ..|| -..+ .+ ..++.++++.. .+.+.+.+
T Consensus 84 ~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~~~~--~~Tg~~~i~v~~~~r~~~~~~ga~~~l~~~~i~~~~~~~~l~~~~ 161 (345)
T PTZ00247 84 CYVGCVGDDRFAEILKEAAEKDGVEMLFEYTTK--APTGTCAVLVCGKERSLVANLGAANHLSAEHMQSHAVQEAIKTAQ 161 (345)
T ss_pred EEEEEeccchhHHHHHHHHHHcCCeeeccccCC--CCcEEEEEEEcCCCcccccCcchhhcCChHHcCcHHHHHHHhhCC
Confidence 3677888765 6678999999987763211 1222 1111 11 23455555432 23455544
Q ss_pred CccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHh
Q 024300 84 LLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQL 163 (269)
Q Consensus 84 ~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l 163 (269)
+++ +.|+... ...+.+.++++.+|++ ++++++|+.... +.....+.+++ +++++|+++||+.|++.|
T Consensus 162 ~v~----~~g~~~~-~~~~~~~~~~~~a~~~--g~~v~~d~~~~~-----~~~~~~~~~~~-~l~~~Dil~~N~~Ea~~l 228 (345)
T PTZ00247 162 LYY----LEGFFLT-VSPNNVLQVAKHARES--GKLFCLNLSAPF-----ISQFFFERLLQ-VLPYVDILFGNEEEAKTF 228 (345)
T ss_pred EEE----EEEEEec-ccHHHHHHHHHHHHHc--CCEEEEECCcHH-----HHHHHHHHHHH-HHhhCCEEEeCHHHHHHH
Confidence 433 2232211 2346788889999988 999999974210 11112233444 889999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHh------cCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEcccc---C-CCCCCchH
Q 024300 164 TGFRIGSEADGREACKILHA------AGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKI---P-AYFTGTGD 233 (269)
Q Consensus 164 ~g~~~~~~~~~~~a~~~l~~------~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~dt~GaGD 233 (269)
+|....+.++..++++.+.+ .+++.|++|.| .+|++++.. ++.++++++++ + +|||||||
T Consensus 229 ~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G-~~G~~~~~~---------~~~~~~~~~~v~~~~vVDTtGAGD 298 (345)
T PTZ00247 229 AKAMKWDTEDLKEIAARIAMLPKYSGTRPRLVVFTQG-PEPTLIATK---------DGVTSVPVPPLDQEKIVDTNGAGD 298 (345)
T ss_pred hhccCCCccCHHHHHHHHHhccccccCCCCEEEEecC-CCceEEEEC---------CEEEEEeccccCCCCccCCCChHH
Confidence 98422122345566666653 24789999998 789998764 24556777665 3 69999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 234 LMTALLLGWSNKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 234 af~a~~~~~l~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
+|+|+|++++.+ |+++++|+++|+++++.++++.
T Consensus 299 aF~agfl~~l~~-g~~~~~al~~a~~aAa~~v~~~ 332 (345)
T PTZ00247 299 AFVGGFLAQYAN-GKDIDRCVEAGHYSAQVIIQHN 332 (345)
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcc
Confidence 999999999998 9999999999999999988763
No 36
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.90 E-value=4.1e-22 Score=174.47 Aligned_cols=216 Identities=19% Similarity=0.174 Sum_probs=151.1
Q ss_pred ccCcccccc---chHHHHhcCCceeeeceEE-------eecCCCCCC-c--ceeecCHHHHHHHHHHHHhCCCccccEE-
Q 024300 25 VQGYVGNKS---AVFPLQLLGYDVDPIHSVQ-------FSNHTGYPT-F--KGQVLNGQQLCDLIEGLEANNLLYYTHL- 90 (269)
Q Consensus 25 ~~g~~G~~a---~~~~l~~~Gv~~~~i~~~~-------~~~~~g~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i- 90 (269)
..|.+|.+. .++.|+++||++..+.... ...+.|-.. + .+..++..+++.+...... .+-.++++
T Consensus 58 ~i~~vG~D~~~~~~~~l~~~gv~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~d~v~ 136 (312)
T PRK09513 58 VGGFLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGEVTDFNFSGFEVTPADWERFVTDSLS-WLGQFDMVA 136 (312)
T ss_pred EEEEecCccHHHHHHHHHHcCCCccEEECCCCCEEEEEEEeCCCcEEEEeCCCCCCCHHHHHHHHHHHHh-hcCCCCEEE
Confidence 455666544 3567889999876553211 001111100 1 1223555555544322111 01135654
Q ss_pred EEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCC
Q 024300 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGS 170 (269)
Q Consensus 91 ~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~ 170 (269)
..|++++....+.+.++++.++++ +.++++||+.. . +.+.+...+++++||++|+..++|.+..+
T Consensus 137 ~~g~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~---------~----~~~~~~~~~~~l~~n~~E~~~l~g~~~~~ 201 (312)
T PRK09513 137 VSGSLPRGVSPEAFTDWMTRLRSQ--CPCIIFDSSRE---------A----LVAGLKAAPWLVKPNRRELEIWAGRKLPE 201 (312)
T ss_pred EECCCCCCCCHHHHHHHHHHHHhc--CCEEEEECChH---------H----HHHHhccCCeEEcCCHHHHHHHhCCCCCC
Confidence 667776655567788889999887 88999999532 1 11224557899999999999999987767
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhccCCCC
Q 024300 171 EADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDN 249 (269)
Q Consensus 171 ~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~~~g~~ 249 (269)
.+++.++++.+.+.|++.|++|.| .+|++++.. ++.++.+.+.++ +||+||||+|+|+|++++++ |++
T Consensus 202 ~~~~~~~~~~l~~~g~~~vvvt~G-~~G~~~~~~---------~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~-g~~ 270 (312)
T PRK09513 202 LKDVIEAAHALREQGIAHVVISLG-AEGALWVNA---------SGEWIAKPPACDVVSTVGAGDSMVGGLIYGLLM-RES 270 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeC-CCCcEEEeC---------CceEEecCCCccccCCCChHHHHHHHHHHHHHc-CCC
Confidence 778888888998999999999998 689988653 244556666666 59999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 024300 250 LDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 250 ~~~a~~~A~~~~~~~l~~ 267 (269)
+++|+++|++++...+++
T Consensus 271 ~~~a~~~A~a~Aa~~~~~ 288 (312)
T PRK09513 271 SEHTLRLATAVSALAVSQ 288 (312)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999998875
No 37
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.90 E-value=3.6e-22 Score=174.91 Aligned_cols=214 Identities=21% Similarity=0.198 Sum_probs=145.2
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEEeecCCCCCC--------c-----c-eeecCHHHHHHHHHHHHhCCCcc
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPT--------F-----K-GQVLNGQQLCDLIEGLEANNLLY 86 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g~~~--------~-----~-~~~~~~~~~~~~~~~~~~~~~~~ 86 (269)
..|.+|.|. ..+.|+++||++..+....- ..|+... + . ...++.......++.+.+. +..
T Consensus 66 ~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ 143 (315)
T TIGR02198 66 LVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKD-RPTTTKTRVLARNQQLLRVDFEERDPINAELEARLLAAIREQ-LAS 143 (315)
T ss_pred EEEEEecchhHHHHHHHHHHCCCCcceEEECCC-CCcceEEEEEcCCeEEEEecCCCCCCCCHHHHHHHHHHHHhh-hhh
Confidence 577777764 45578899999877643320 1222110 0 0 0013322222222222111 113
Q ss_pred ccEEEE-cccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhC
Q 024300 87 YTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (269)
Q Consensus 87 ~~~i~~-G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g 165 (269)
++++.+ |........+.+..+++.++++ +++|++||+... + ..++++|+++||++|++.|++
T Consensus 144 ~~~v~~~~~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~----~-----------~~~~~~d~l~~n~~E~~~l~~ 206 (315)
T TIGR02198 144 ADAVVLSDYAKGVLTPRVVQEVIAAARKH--GKPVLVDPKGKD----F-----------SRYRGATLITPNRKEAEAAVG 206 (315)
T ss_pred CCEEEEecCCCCccCHHHHHHHHHHHHhc--CCCEEEeCCCcc----h-----------hhcCCCcEECCCHHHHHHHhC
Confidence 555554 3322223356677888999988 899999996431 1 157789999999999999998
Q ss_pred CCCCCHHHHHHHHHHHH-hcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhh
Q 024300 166 FRIGSEADGREACKILH-AAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWS 243 (269)
Q Consensus 166 ~~~~~~~~~~~a~~~l~-~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l 243 (269)
...+.++.+++++.+. +.|++.|+||.| .+|++++... +..++++.++++ +||+||||+|.|+|++++
T Consensus 207 -~~~~~~~~~~~~~~l~~~~g~~~vivT~G-~~G~~~~~~~--------~~~~~~~~~~~~vvdt~GAGDaf~ag~~~~l 276 (315)
T TIGR02198 207 -ACDTEAELVQAAEKLLEELDLEALLVTRS-EKGMTLFTRE--------GEPIHIPAQAREVYDVTGAGDTVIATLALAL 276 (315)
T ss_pred -CCCCHHHHHHHHHHHHHHcCCCEEEEEcC-CCCeEEEecC--------CCeEEecCCCCCCCCCcCccHHHHHHHHHHH
Confidence 3345567777777776 578999999998 6899887531 245667766666 699999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 244 NKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 244 ~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
.+ |+++++|+++|+++++..+++.
T Consensus 277 ~~-g~~~~~al~~A~~~aa~~~~~~ 300 (315)
T TIGR02198 277 AA-GASLEEACRLANAAAGVVVGKL 300 (315)
T ss_pred Hc-CCCHHHHHHHHHHHhhhhhccC
Confidence 98 9999999999999999887753
No 38
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.90 E-value=5.2e-22 Score=173.54 Aligned_cols=218 Identities=16% Similarity=0.101 Sum_probs=147.4
Q ss_pred ccCcccccc---chHHHHhcCCceeeeceEE------eecCCCCCCc---ceeecCHHHHHHHHHHHHhCCCccccEE-E
Q 024300 25 VQGYVGNKS---AVFPLQLLGYDVDPIHSVQ------FSNHTGYPTF---KGQVLNGQQLCDLIEGLEANNLLYYTHL-L 91 (269)
Q Consensus 25 ~~g~~G~~a---~~~~l~~~Gv~~~~i~~~~------~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~ 91 (269)
..|.+|.+. +.+.|++.||++.++.... .-...|...+ .+..+..+.....++.+.+. +-..+.+ .
T Consensus 54 ~i~~vG~~~G~~i~~~l~~~GV~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~ 132 (309)
T TIGR01231 54 ASGFLGGKLGEFIEKELDHSDIKHAFYKISGETRNCIAILHEGQQTEILEQGPEISNQEAAGFLKHFEQL-LEKVEVVAI 132 (309)
T ss_pred EEEEecChhHHHHHHHHHHcCCceeEEECCCCCEEeEEEEeCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hccCCEEEE
Confidence 355556432 5667899999988775321 0001121111 11123322222222222110 0124443 4
Q ss_pred EcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCC-CC
Q 024300 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRI-GS 170 (269)
Q Consensus 92 ~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~-~~ 170 (269)
.|.++.....+.+.++++.++++ ++++++||+... .+.+.+ .++++|+++||..|++.++|.+. .+
T Consensus 133 ~g~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~----------~~~~~~-~~~~~dil~~n~~E~~~l~g~~~~~~ 199 (309)
T TIGR01231 133 SGSLPKGLPQDYYAQIIERCQNK--GVPVVLDCSGAT----------LQTVLE-NPAKPTVIKPNIEELSQLLNQELTED 199 (309)
T ss_pred ECCCCCCcCHHHHHHHHHHHHhC--CCeEEEECChHH----------HHHHHh-ccCCCeEEcCCHHHHHHHhCCCCCCC
Confidence 45554433456778889999987 999999996531 112222 56789999999999999999654 34
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhccCCCC
Q 024300 171 EADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDN 249 (269)
Q Consensus 171 ~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~~~g~~ 249 (269)
.+++.++++.+.+.|.+.|++|.| .+|++++.+ ++.++++.+.++ +||+||||+|+|+|++++++ |++
T Consensus 200 ~~~~~~~~~~~~~~g~~~vivT~G-~~G~~~~~~---------~~~~~~~~~~v~vvDttGAGDaF~agfl~~l~~-g~~ 268 (309)
T TIGR01231 200 LESLKQALSQPLFSGIEWIIVSLG-AQGAFAKHG---------HTFYKVNIPTISVVNPVGSGDSTVAGITSALLN-HES 268 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccC-CCceEEEeC---------CeeEEeeCCccCcCCCcchHHHHHHHHHHHHHc-CCC
Confidence 566777788887889999999998 699988753 245667777777 69999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 024300 250 LDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 250 ~~~a~~~A~~~~~~~l~~ 267 (269)
+++|+++|++++....++
T Consensus 269 ~~~a~~~a~a~aa~~~~~ 286 (309)
T TIGR01231 269 DHDLLKKANTLGMLNAQE 286 (309)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999988765
No 39
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.90 E-value=1.7e-21 Score=168.66 Aligned_cols=216 Identities=20% Similarity=0.207 Sum_probs=153.8
Q ss_pred ccCccccc---cchHHHHhcCCceeeeceEE-------eecCCCC-CCc--ceeecCHHHHHHHHHHHHhCCCccccEEE
Q 024300 25 VQGYVGNK---SAVFPLQLLGYDVDPIHSVQ-------FSNHTGY-PTF--KGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (269)
Q Consensus 25 ~~g~~G~~---a~~~~l~~~Gv~~~~i~~~~-------~~~~~g~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (269)
..|.+|.+ .+++.|++.||++..+.... ..+..+- ..+ .+..++.++++.+.+.+.+.. -.++.+.
T Consensus 55 ~is~vG~D~g~~i~~~l~~~gi~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 133 (289)
T cd01164 55 ALGFLGGFTGDFFEALLKEEGIPDDFVEVAGETRINVKIKEEDGTETEINEPGPEISEEELEALLEKLKALL-KKGDIVV 133 (289)
T ss_pred EEEEccCchhHHHHHHHHHcCCCceEEECCCCCEEEEEEEeCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCCEEE
Confidence 35555544 25667899999988875421 0111111 011 122466666666655443211 1255544
Q ss_pred -EcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCC
Q 024300 92 -TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGS 170 (269)
Q Consensus 92 -~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~ 170 (269)
.|.++.....+.+..+++.++++ ++++++||+.+. +.+.+.+++|+++||+.|++.+++....+
T Consensus 134 i~g~~~~~~~~~~~~~~~~~~~~~--~~~i~~D~~~~~-------------~~~~~~~~~dil~~n~~E~~~l~~~~~~~ 198 (289)
T cd01164 134 LSGSLPPGVPADFYAELVRLAREK--GARVILDTSGEA-------------LLAALAAKPFLIKPNREELEELFGRPLGD 198 (289)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHc--CCeEEEECChHH-------------HHHHHhcCCcEECCCHHHHHHHhCCCCCC
Confidence 46666434445677788888887 899999995431 11212379999999999999999987777
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhccCCCC
Q 024300 171 EADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDN 249 (269)
Q Consensus 171 ~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~~~g~~ 249 (269)
.++..++++.|.+.+++.|++|.| .+|++++.. ++.++++.++++ +||+||||+|+|+|++++.+ |++
T Consensus 199 ~~~~~~~~~~l~~~g~~~vivt~G-~~G~~~~~~---------~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~-g~~ 267 (289)
T cd01164 199 EEDVIAAARKLIERGAENVLVSLG-ADGALLVTK---------DGVYRASPPKVKVVSTVGAGDSMVAGFVAGLAQ-GLS 267 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecC-CCCCEEEcC---------CcEEEecCCCccccCCCChHHHHHHHHHHHHHc-CCC
Confidence 788888999999999999999998 689988643 245667767666 69999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 024300 250 LDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 250 ~~~a~~~A~~~~~~~l~~ 267 (269)
+++|+++|++++...+++
T Consensus 268 ~~~a~~~A~~~Aa~~~~~ 285 (289)
T cd01164 268 LEEALRLAVAAGSATAFS 285 (289)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999988765
No 40
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.90 E-value=7.4e-22 Score=172.07 Aligned_cols=217 Identities=21% Similarity=0.227 Sum_probs=153.0
Q ss_pred ccCcccccc---chHHHHhcCCceeeeceEE-------eecCCCCC-Cc--ceeecCHHHHHHHHHHHHhCCCccccEEE
Q 024300 25 VQGYVGNKS---AVFPLQLLGYDVDPIHSVQ-------FSNHTGYP-TF--KGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (269)
Q Consensus 25 ~~g~~G~~a---~~~~l~~~Gv~~~~i~~~~-------~~~~~g~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (269)
..|.+|.|. ..+.|+..||++..+.... ..+..|.. .+ .+..++.++++.+.+.+.+. +-.++.+.
T Consensus 54 ~i~~vG~D~g~~i~~~l~~~gI~~~~i~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~ 132 (303)
T TIGR03168 54 ATGFLGGFTGEFIEALLAEEGIKNDFVEVKGETRINVKIKESSGEETELNEPGPEISEEELEQLLEKLREL-LASGDIVV 132 (303)
T ss_pred EEEEeCCchhHHHHHHHHHcCCCceEEECCCCCEEeEEEEeCCCCEEEEeCcCCCCCHHHHHHHHHHHHHh-ccCCCEEE
Confidence 455555443 5557899999988885421 00111211 01 12235566666555443221 00245444
Q ss_pred E-cccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCC
Q 024300 92 T-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGS 170 (269)
Q Consensus 92 ~-G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~ 170 (269)
+ |+.......+.+..+++.++++ +.++++||+.. . +.+.+..++|+++||+.|+..++|....+
T Consensus 133 i~~~~~~~~~~~~~~~~~~~~~~~--g~~v~~D~~~~---------~----~~~~~~~~~dil~~n~~E~~~l~g~~~~~ 197 (303)
T TIGR03168 133 ISGSLPPGVPPDFYAQLIAIARKR--GAKVILDTSGE---------A----LREALAAKPFLIKPNHEELEELFGRELKT 197 (303)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHC--CCEEEEECCcH---------H----HHHHHhcCCcEECCCHHHHHHHhCCCCCC
Confidence 4 5543333456677888888887 89999999432 1 11224458999999999999999987766
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhccCCCC
Q 024300 171 EADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDN 249 (269)
Q Consensus 171 ~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~~~g~~ 249 (269)
.++..++++.+.++|++.|++|.| .+|++++.. ++.++++.+.++ +|++||||+|+|+|++++.+ |++
T Consensus 198 ~~~~~~~~~~l~~~g~~~vviT~g-~~G~~~~~~---------~~~~~~~~~~~~~vDttGAGD~F~a~~~~~l~~-g~~ 266 (303)
T TIGR03168 198 EEEIIEAARELLDRGAENVLVSLG-ADGALLVTK---------EGALKATPPKVEVVNTVGAGDSMVAGFLAGLAR-GLS 266 (303)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeec-CCCcEEEeC---------CceEEeeCCcceeecCcCHHHHHHHHHHHHHHc-CCC
Confidence 778888888898899999999998 689988764 245667776666 69999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 024300 250 LDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 250 ~~~a~~~A~~~~~~~l~~~ 268 (269)
+++|+++|+.++...+++.
T Consensus 267 i~~a~~~A~~~aa~~~~~~ 285 (303)
T TIGR03168 267 LEEALRFAVAAGSAAAFSP 285 (303)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999999988763
No 41
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.90 E-value=1e-21 Score=171.69 Aligned_cols=217 Identities=17% Similarity=0.073 Sum_probs=147.6
Q ss_pred ccCcccccc---chHHHHhcCCceeeeceEEe------ecCCCCCCc---ceeecCHHHHHHHHHHHHhCCCccccEE-E
Q 024300 25 VQGYVGNKS---AVFPLQLLGYDVDPIHSVQF------SNHTGYPTF---KGQVLNGQQLCDLIEGLEANNLLYYTHL-L 91 (269)
Q Consensus 25 ~~g~~G~~a---~~~~l~~~Gv~~~~i~~~~~------~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~ 91 (269)
..|.+|++. .++.|++ ||++.++..... -...|-..+ .+..++.++..++++.+.+. +-.++.+ .
T Consensus 55 ~~~~vGd~~G~~i~~~l~~-gI~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~ 132 (309)
T PRK13508 55 ATGLIGGELGQFIAEHLDD-QIKHAFYKIKGETRNCIAILHEGQQTEILEKGPEISVQEADGFLHHFKQL-LESVEVVAI 132 (309)
T ss_pred EEEEecChhHHHHHHHHHc-CCCceEEECCCCCeeeEEEEeCCCEEEEECCCCCCCHHHHHHHHHHHHHh-ccCCCEEEE
Confidence 355666322 5667888 998876543210 001111111 12234444444444333221 1134544 4
Q ss_pred EcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCC-C
Q 024300 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG-S 170 (269)
Q Consensus 92 ~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~-~ 170 (269)
.|+++.....+.+.++++.++++ ++++++||+... .+.+.. .++++|+++||+.|+..++|.+.. +
T Consensus 133 ~g~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~----------~~~~~~-~~~~~dii~~n~~E~~~l~g~~~~~~ 199 (309)
T PRK13508 133 SGSLPAGLPVDYYAQLIELANQA--GKPVVLDCSGAA----------LQAVLE-SPYKPTVIKPNIEELSQLLGKEVSED 199 (309)
T ss_pred eCCCCCCcCHHHHHHHHHHHHHC--CCEEEEECCcHH----------HHHHHh-ccCCceEEccCHHHHHHHhCCCCCCC
Confidence 45554433346677788888887 999999995331 111222 357899999999999999997653 4
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhccCCCC
Q 024300 171 EADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDN 249 (269)
Q Consensus 171 ~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~~~g~~ 249 (269)
.+++.++++.+.+.|++.|++|+| .+|+++..+ ++.++.+.+.++ +||+||||+|.|+|++++++ |++
T Consensus 200 ~~~~~~~~~~~~~~g~~~vvvT~G-~~G~~~~~~---------~~~~~~~~~~v~vvDttGAGDaF~Agfi~~l~~-g~~ 268 (309)
T PRK13508 200 LDELKEVLQQPLFEGIEWIIVSLG-ADGAFAKHN---------DTFYKVDIPKIEVVNPVGSGDSTVAGIASGLLH-QED 268 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecC-CCceEEEeC---------CceEEEeCCCccccCCcChhHHHHHHHHHHHHc-CCC
Confidence 567777777887889999999998 799988653 245667777777 69999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 024300 250 LDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 250 ~~~a~~~A~~~~~~~l~~ 267 (269)
+++|+++|+++++...++
T Consensus 269 ~~~al~~a~a~aa~~~~~ 286 (309)
T PRK13508 269 DADLLKKANVLGMLNAQE 286 (309)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999988765
No 42
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.90 E-value=8.7e-23 Score=178.66 Aligned_cols=212 Identities=22% Similarity=0.191 Sum_probs=147.8
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEEeecCCC----------CCCc---ce--eecCHHHHHHHHHHHHhCCCc
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTG----------YPTF---KG--QVLNGQQLCDLIEGLEANNLL 85 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g----------~~~~---~~--~~~~~~~~~~~~~~~~~~~~~ 85 (269)
..|.+|.|. .+..|+++||++..+.... ..|+ -..+ .+ ..++.+++.. +.+.+.+++
T Consensus 74 ~i~~vG~D~~g~~i~~~l~~~GV~~~~~~~~~--~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~--~~l~~~~~v 149 (312)
T cd01168 74 FIGRVGDDKLGDFLLKDLRAAGVDTRYQVQPD--GPTGTCAVLVTPDAERTMCTYLGAANELSPDDLDW--SLLAKAKYL 149 (312)
T ss_pred EEEEeccChhHHHHHHHHHHCCCccccccCCC--CCceEEEEEEcCCCceeeecccchhhcCChhHCCH--HHHccCCEE
Confidence 577777665 5667899999988775321 1222 1111 11 2344444432 235543332
Q ss_pred cccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhC
Q 024300 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (269)
Q Consensus 86 ~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g 165 (269)
+ ..|+... ...+.+..+++.++++ ++++++||+... ..+...+.+.+ +++++|+++||++|++.|++
T Consensus 150 ~----~~~~~~~-~~~~~~~~~~~~a~~~--g~~v~~d~~~~~-----~~~~~~~~~~~-~l~~~d~l~~n~~E~~~l~~ 216 (312)
T cd01168 150 Y----LEGYLLT-VPPEAILLAAEHAKEN--GVKIALNLSAPF-----IVQRFKEALLE-LLPYVDILFGNEEEAEALAE 216 (312)
T ss_pred E----EEEEecC-CCHHHHHHHHHHHHHc--CCEEEEeCCcHH-----HHHHHHHHHHH-HHhhCCEEEeCHHHHHHHhC
Confidence 2 2333221 1226777888889887 899999995321 11122333444 78999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccc-cC-CCCCCchHHHHHHHHHhh
Q 024300 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPK-IP-AYFTGTGDLMTALLLGWS 243 (269)
Q Consensus 166 ~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~dt~GaGDaf~a~~~~~l 243 (269)
.+. ++..++++.+.+.+++.|++|.| .+|++++.. ++.+++++++ ++ +||+||||+|+|+|++++
T Consensus 217 ~~~---~~~~~~a~~l~~~g~~~vvvt~G-~~G~~~~~~---------~~~~~~~~~~~~~vvDttGAGDaf~ag~l~~l 283 (312)
T cd01168 217 AET---TDDLEAALKLLALRCRIVVITQG-AKGAVVVEG---------GEVYPVPAIPVEKIVDTNGAGDAFAGGFLYGL 283 (312)
T ss_pred CCC---CChHHHHHHHHhcCCCEEEEecC-CCCeEEEEC---------CEEEeCCCCCCCCcccCCchHHHHHHHHHHHH
Confidence 522 34567788888889999999998 689988753 2456677666 55 699999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhc
Q 024300 244 NKYRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 244 ~~~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
.+ |+++++|+++|++++..++++
T Consensus 284 ~~-g~~~~~a~~~a~~~Aa~~v~~ 306 (312)
T cd01168 284 VQ-GEPLEECIRLGSYAAAEVIQQ 306 (312)
T ss_pred Hc-CCCHHHHHHHHHHHHHHHHhc
Confidence 98 999999999999999998876
No 43
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.89 E-value=1.3e-21 Score=169.60 Aligned_cols=210 Identities=21% Similarity=0.250 Sum_probs=152.9
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEEeecCCC----------CCCc---ce--eecCHHHHHHHHHHHHhCCCc
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTG----------YPTF---KG--QVLNGQQLCDLIEGLEANNLL 85 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g----------~~~~---~~--~~~~~~~~~~~~~~~~~~~~~ 85 (269)
..+.+|.|. .+..|++.||++.++.... ..+|+ -..+ .+ ..+++++++.+.+.+..
T Consensus 50 ~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 124 (293)
T TIGR02152 50 MIGKVGDDAFGDELLENLKSNGIDTEYVGTVK-DTPTGTAFITVDDTGENRIVVVAGANAELTPEDIDAAEALIAE---- 124 (293)
T ss_pred EEEEecCCccHHHHHHHHHHcCCCeeEEEEcC-CCCCceEEEEEcCCCCEEEEEECCcCCcCCHHHHHHHHhhhcc----
Confidence 466777664 5667899999998886332 01122 1111 11 24566677665555554
Q ss_pred cccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhC
Q 024300 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (269)
Q Consensus 86 ~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g 165 (269)
.+.+.+.. ....+.+.++++.++++ ++++++||+.... .. .. .+++++|++++|.+|+..+++
T Consensus 125 -~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~v~~D~~~~~~-------~~---~~-~~~~~~d~l~~n~~E~~~l~~ 187 (293)
T TIGR02152 125 -SDIVLLQL---EIPLETVLEAAKIAKKH--GVKVILNPAPAIK-------DL---DD-ELLSLVDIITPNETEAEILTG 187 (293)
T ss_pred -CCEEEEec---CCCHHHHHHHHHHHHHc--CCEEEEECCcCcc-------cc---hH-HHHhcCCEEccCHHHHHHHhC
Confidence 34444432 12345677888888887 8999999965411 00 02 378899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhc
Q 024300 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSN 244 (269)
Q Consensus 166 ~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~ 244 (269)
....+.++..++++.+.++|++.|++|.| .+|++++.+ ++.++++.++++ +||+||||+|+|+|++++.
T Consensus 188 ~~~~~~~~~~~~~~~l~~~g~~~vvvt~G-~~g~~~~~~---------~~~~~~~~~~~~~vdt~GAGDaf~Ag~l~~l~ 257 (293)
T TIGR02152 188 IEVTDEEDAEKAAEKLLEKGVKNVIITLG-SKGALLVSK---------DESKLIPAFKVKAVDTTAAGDTFNGAFAVALA 257 (293)
T ss_pred CCCCCcchHHHHHHHHHHcCCCeEEEEeC-CCceEEEeC---------CceeEccCCCCceeCCCCcHHHHHHHHHHHHH
Confidence 87666677888888998899999999998 689888754 245566666666 6999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhc
Q 024300 245 KYRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 245 ~~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
+ |+++++|+++|+.++..++++
T Consensus 258 ~-g~~~~~al~~a~~~Aa~~~~~ 279 (293)
T TIGR02152 258 E-GKSLEDAIRFANAAAAISVTR 279 (293)
T ss_pred C-CCCHHHHHHHHHHHHHHHHcc
Confidence 8 999999999999999988765
No 44
>PRK09954 putative kinase; Provisional
Probab=99.89 E-value=7.3e-22 Score=176.28 Aligned_cols=209 Identities=18% Similarity=0.104 Sum_probs=143.6
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEEeecCCCC----------CCc--ce----eecCHHHHHHHHHHHHhCCC
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGY----------PTF--KG----QVLNGQQLCDLIEGLEANNL 84 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g~----------~~~--~~----~~~~~~~~~~~~~~~~~~~~ 84 (269)
..|.+|.|. .++.|++.||+++++.... ...|+. ..+ .+ ..++++.++...+.+..
T Consensus 112 ~ig~VG~D~~G~~i~~~l~~~GVd~~~~~~~~-~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 187 (362)
T PRK09954 112 LLSAIGDDFYGETLLEETRRAGVNVSGCIRLH-GQSTSTYLAIANRQDETVLAINDTHILQQLTPQLLNGSRDLIRH--- 187 (362)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCccceEEcC-CCCCeEEEEEEcCCCCEEEEEcCchhhhcCCHHHHHHHHHHHhc---
Confidence 577778765 5678899999988765432 011221 001 01 13444445444444443
Q ss_pred ccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhh
Q 024300 85 LYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (269)
Q Consensus 85 ~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~ 164 (269)
.+.+.+..-.+ .+.+..+++.+ + ++++++||..... .+.+++ +++++|+++||+.|++.|+
T Consensus 188 --~~~v~~~~~~~---~~~~~~~~~~a--~--~~~v~~D~~~~~~---------~~~~~~-~l~~~dil~~n~~Ea~~l~ 248 (362)
T PRK09954 188 --AGVVLADCNLT---AEALEWVFTLA--D--EIPVFVDTVSEFK---------AGKIKH-WLAHIHTLKPTQPELEILW 248 (362)
T ss_pred --CCEEEEECCCC---HHHHHHHHHhC--C--CCcEEEECCCHHH---------hhhhhh-hhccccEEecCHHHHHHHc
Confidence 34454443222 23344444443 3 7899999854210 012333 8899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhh
Q 024300 165 GFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWS 243 (269)
Q Consensus 165 g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l 243 (269)
|....+.++.+++++.+.+.|++.|+||.| .+|+++.... ++.++++.+.++ +|||||||+|.|+|++++
T Consensus 249 g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~G-~~G~~~~~~~--------~~~~~~~~~~v~vvDttGAGDaF~Ag~l~~l 319 (362)
T PRK09954 249 GQAITSDADRNAAVNALHQQGVQQIFVYLP-DESVFCSEKD--------GEQFLLTAPAHTTVDSFGADDGFMAGLVYSF 319 (362)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEeC-CccEEEEeCC--------CceEeccCCCcccccccchHHHHHHHHHHHH
Confidence 976666667788889999999999999998 6898876531 234555666666 699999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhh
Q 024300 244 NKYRDNLDIAAELAVSSLQVLLL 266 (269)
Q Consensus 244 ~~~g~~~~~a~~~A~~~~~~~l~ 266 (269)
.+ |+++++|+++|++++...+.
T Consensus 320 ~~-g~~~~eal~~a~a~Aal~~~ 341 (362)
T PRK09954 320 LE-GYSFRDSARFAMACAAISRA 341 (362)
T ss_pred Hc-CCCHHHHHHHHHHHHHHHhc
Confidence 98 99999999999999988754
No 45
>PRK09850 pseudouridine kinase; Provisional
Probab=99.89 E-value=8.1e-22 Score=172.66 Aligned_cols=211 Identities=19% Similarity=0.157 Sum_probs=142.7
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEE---------eecCCCCCCc--ce----eecCHHHHHHHHHHHHhCCCc
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQ---------FSNHTGYPTF--KG----QVLNGQQLCDLIEGLEANNLL 85 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~---------~~~~~g~~~~--~~----~~~~~~~~~~~~~~~~~~~~~ 85 (269)
..|.+|.|. +++.|++.||+++.+.... ..+..|-..+ .. ..++.+.++...+.+.+
T Consensus 59 ~ig~vG~D~~g~~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 134 (313)
T PRK09850 59 LLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLAQHREFIQR---- 134 (313)
T ss_pred EEEEecCchhHHHHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHHHHHHHHhc----
Confidence 577888764 5678899999988764321 0011121111 00 12233333333333443
Q ss_pred cccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhC
Q 024300 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (269)
Q Consensus 86 ~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g 165 (269)
++.+.+..- ...+.+..+++++ + ++++++||+.... . ..+++ +++++|+++||++|+..|+|
T Consensus 135 -~~~v~~~~~---~~~~~~~~~~~~~--~--g~~v~~D~~~~~~-----~----~~~~~-~l~~~dil~~N~~Ea~~l~g 196 (313)
T PRK09850 135 -AKVIVADCN---ISEEALAWILDNA--A--NVPVFVDPVSAWK-----C----VKVRD-RLNQIHTLKPNRLEAETLSG 196 (313)
T ss_pred -CCEEEEeCC---CCHHHHHHHHHhc--c--CCCEEEEcCCHHH-----H----HHHHh-hhccceEEccCHHHHHHHhC
Confidence 344443321 1233444444433 3 7899999964311 1 12334 78899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhc
Q 024300 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSN 244 (269)
Q Consensus 166 ~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~ 244 (269)
....+.++..++++.|.+.|.+.|+||.| .+|+++.... ++..+++.++++ +||+||||+|.|+|++++.
T Consensus 197 ~~~~~~~~~~~~~~~l~~~g~~~vvvT~G-~~G~~~~~~~--------~~~~~~~~~~~~vvDttGAGDaF~agfi~~l~ 267 (313)
T PRK09850 197 IALSGREDVAKVAAWFHQHGLNRLVLSMG-GDGVYYSDIS--------GESGWSAPIKTNVINVTGAGDAMMAGLASCWV 267 (313)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeC-CceEEEEcCC--------CCeEecCCCCcccccCCCcHHHHHHHHHHHHH
Confidence 77666678888888998899999999998 7899887531 133345555566 6999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhc
Q 024300 245 KYRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 245 ~~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
+ |+++++|+++|+++++..++.
T Consensus 268 ~-g~~~~eal~~a~a~aa~~~~~ 289 (313)
T PRK09850 268 D-GMPFAESVRFAQGCSSMALSC 289 (313)
T ss_pred c-CCCHHHHHHHHHHHHHHHhcC
Confidence 8 999999999999999988764
No 46
>PLN02967 kinase
Probab=99.89 E-value=7.6e-23 Score=188.81 Aligned_cols=223 Identities=14% Similarity=0.121 Sum_probs=147.2
Q ss_pred cccCcccccc----chHHHHhcCCceeeeceEEeecCCCCC----------Ccc----e--eecCHHHHHHHHHHHHhCC
Q 024300 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYP----------TFK----G--QVLNGQQLCDLIEGLEANN 83 (269)
Q Consensus 24 ~~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g~~----------~~~----~--~~~~~~~~~~~~~~~~~~~ 83 (269)
...|.+|.|. ++..|+..||+++.+.... ...|+.. .+. + ..++.+++.. +.+.+.
T Consensus 261 ~fIg~VGdD~~G~~ll~~L~~~GVDts~v~~~~-~~~Tgla~V~vd~~Gerr~~~~~~gAd~~L~~~di~~--~~l~~A- 336 (581)
T PLN02967 261 AFMGKLGDDDYGQAMLYYLNVNKVQTRSVCIDG-KRATAVSTMKIAKRGRLKTTCVKPCAEDSLSKSEINI--DVLKEA- 336 (581)
T ss_pred EEEEEeCCCHHHHHHHHHHHHcCCcccceEecC-CCCCcEEEEEECCCCceEEEEecCChhhhCChhhcCH--hHhcCC-
Confidence 3688888776 6778999999998875432 1123211 110 0 1223333321 234443
Q ss_pred CccccEEEEcccC--ChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCC-hhhHHHHHHhccCCCcEEcCCHHHH
Q 024300 84 LLYYTHLLTGYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEA 160 (269)
Q Consensus 84 ~~~~~~i~~G~l~--~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~-~~~~~~~~~~ll~~~dii~pN~~E~ 160 (269)
+++.+|.+. +....+.+.++++.++++ +++|+||||++.. +|.. ++..+.+.+ +++++||+++|++|+
T Consensus 337 ----~i~hfgg~~ll~e~~~~all~alk~Ak~~--Gv~VsFDpNlR~~--lw~~~e~~~e~i~e-lL~~aDILk~NeeEl 407 (581)
T PLN02967 337 ----KMFYFNTHSLLDPTMRSTTLRAIKISKKL--GGVIFYDLNLPLP--LWSSSEETKSFIQE-AWNLADIIEVTKQEL 407 (581)
T ss_pred ----CEEEEeCchhcccchHHHHHHHHHHHHHC--CCEEEEECCCCcc--cccchHHHHHHHHH-HHHhCCEEEECHHHH
Confidence 444444432 234467788899999988 9999999998743 3322 334455665 899999999999999
Q ss_pred HHhhCCCCCCH-----H-------HHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC---
Q 024300 161 EQLTGFRIGSE-----A-------DGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP--- 225 (269)
Q Consensus 161 ~~l~g~~~~~~-----~-------~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 225 (269)
..|+|...... + ...+.+..+...|++.|+||.| .+|++++..... .....++++.+.
T Consensus 408 ~~LtG~~~~~e~~~~~~~~~~~~~~~~e~a~~l~~~g~k~VVVTlG-~~Ga~~~~~~~~------~~v~~~~a~~V~V~v 480 (581)
T PLN02967 408 EFLCGIEPTEEFDTKDNDKSKFVHYSPEVVAPLWHENLKVLFVTNG-TSKIHYYTKEHN------GAVHGMEDAPITPFT 480 (581)
T ss_pred HHHhCCCccccccccccchhccccchHHHHHHHHhCCCCEEEEEEC-ccceEEEECCCc------eeEeeccCCCCCCCC
Confidence 99998632100 0 0123455666678999999998 799988764210 123334444444
Q ss_pred CCCCCchHHHHHHHHHhhccCC-------CCHHHHHHHHHHHHHHHhhc
Q 024300 226 AYFTGTGDLMTALLLGWSNKYR-------DNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 226 ~dt~GaGDaf~a~~~~~l~~~g-------~~~~~a~~~A~~~~~~~l~~ 267 (269)
+|||||||+|+|||+++|++ + .++++++++|+++++-...+
T Consensus 481 VDTTGAGDAF~AGfL~~Ll~-g~~~~~g~~~LeeaLrfAnAaAAL~vt~ 528 (581)
T PLN02967 481 SDMSASGDGIVAGLMRMLTV-QPHLITDKGYLEKTIKYAIDCGVIDQWL 528 (581)
T ss_pred CCCCchhHHHHHHHHHHHHh-ccCcccccccHHHHHHHHHHHHHHHhcc
Confidence 69999999999999999996 5 57999999999999865543
No 47
>PLN02323 probable fructokinase
Probab=99.88 E-value=2.7e-21 Score=170.53 Aligned_cols=217 Identities=16% Similarity=0.095 Sum_probs=144.8
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEE--------e-ecCCCCCCc--c---ee--ecCHHHHHHHHHHHHhCCC
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQ--------F-SNHTGYPTF--K---GQ--VLNGQQLCDLIEGLEANNL 84 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~--------~-~~~~g~~~~--~---~~--~~~~~~~~~~~~~~~~~~~ 84 (269)
..|.+|.|. +++.|++.||+++++.... . .+..|-..+ . +. .++.++++. +.+.+.
T Consensus 62 ~i~~vG~D~~g~~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~-- 137 (330)
T PLN02323 62 FIGKVGDDEFGHMLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDL--DLIRKA-- 137 (330)
T ss_pred EEEEecCChhHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCCh--HHHccC--
Confidence 577788764 5678999999988775321 0 011221111 0 11 233344432 233333
Q ss_pred ccccEEEEcccC--ChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCC-hhhHHHHHHhccCCCcEEcCCHHHHH
Q 024300 85 LYYTHLLTGYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAE 161 (269)
Q Consensus 85 ~~~~~i~~G~l~--~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~-~~~~~~~~~~ll~~~dii~pN~~E~~ 161 (269)
+.+..+.+. .......+..+++.++++ +++|++||+++.. .|.. +...+.+.+ +++++|+++||+.|+.
T Consensus 138 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~--~~~~~~~~~~~~~~-~l~~~dil~~n~~E~~ 209 (330)
T PLN02323 138 ---KIFHYGSISLITEPCRSAHLAAMKIAKEA--GALLSYDPNLRLP--LWPSAEAAREGIMS-IWDEADIIKVSDEEVE 209 (330)
T ss_pred ---CEEEEechhccCchHHHHHHHHHHHHHHc--CCEEEEcCCCChh--hccCHHHHHHHHHH-HHHhCCEEEcCHHHHH
Confidence 333333321 223345566788889887 9999999987632 2222 233344544 7889999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHH
Q 024300 162 QLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLL 240 (269)
Q Consensus 162 ~l~g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~ 240 (269)
.++|....+.++ +. .+...|++.|++|.| .+|++++.+ ++.+++++++++ +||+||||+|.|+|+
T Consensus 210 ~l~g~~~~~~~~---~~-~~~~~g~~~vvvt~G-~~G~~~~~~---------~~~~~~~~~~v~vvDttGAGDaf~Agfl 275 (330)
T PLN02323 210 FLTGGDDPDDDT---VV-KLWHPNLKLLLVTEG-EEGCRYYTK---------DFKGRVEGFKVKAVDTTGAGDAFVGGLL 275 (330)
T ss_pred HHhCCCCccHHH---HH-HHHhcCCCEEEEecC-CCceEEEeC---------CCceEeCCccCCCCCCCCcHHHHHHHHH
Confidence 999875433222 22 344568999999998 799988764 234556666666 699999999999999
Q ss_pred HhhccCCCC-------HHHHHHHHHHHHHHHhhcC
Q 024300 241 GWSNKYRDN-------LDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 241 ~~l~~~g~~-------~~~a~~~A~~~~~~~l~~~ 268 (269)
+++++ |++ +++|+++|++++..++++.
T Consensus 276 ~~l~~-g~~~~~~~~~l~~al~~a~a~Aa~~v~~~ 309 (330)
T PLN02323 276 SQLAK-DLSLLEDEERLREALRFANACGAITTTER 309 (330)
T ss_pred HHHHc-CCccccchHHHHHHHHHHHHHHHHHHhcc
Confidence 99998 976 8999999999999988763
No 48
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.88 E-value=2e-21 Score=166.79 Aligned_cols=219 Identities=20% Similarity=0.102 Sum_probs=143.2
Q ss_pred CCCccccCCCCCCCcEEEEecccccCccccccchHHHHhcCCceeeeceEEeec-CCCC----CCcceeecCHHHHHHHH
Q 024300 2 APPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSN-HTGY----PTFKGQVLNGQQLCDLI 76 (269)
Q Consensus 2 ~~~~~~~~~~~~~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~-~~g~----~~~~~~~~~~~~~~~~~ 76 (269)
-|++....||++.|+||+|+|++.+++++..+++..++. |.+...+.+.+ + .+.+ +++....++ +..+++.
T Consensus 12 ~p~~~~~~~K~~~G~vliiaGs~~~~GA~ila~l~~~~~-g~~~v~~~~~~--~~~~~i~~~~pe~~~~~~~-~~~~~~~ 87 (272)
T TIGR00196 12 LPLRDPNSHKGQYGRVLIIGGSDDYSGAPLLAALAALRA-GAGLVTVAAPE--NVITLINSVSPELIVHRLG-WKVDEDE 87 (272)
T ss_pred CCCCCCCCCCCCCCeEEEEeCCCCCCcHHHHHHHHHHHh-CCCeEEEEEch--hhHHHHhhcCCEEEEecch-hhHHHHH
Confidence 488888999999999999999999999999998888765 44433332222 2 1111 111111221 1222222
Q ss_pred HHHHhCCCccccEEEEcc-cCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcC
Q 024300 77 EGLEANNLLYYTHLLTGY-IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTP 155 (269)
Q Consensus 77 ~~~~~~~~~~~~~i~~G~-l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~p 155 (269)
+.+. .++++++|. +++... +.++++.++++ +.|+|+||... . + .+.... ..+++++|||
T Consensus 88 ~~~~-----~~davvig~Gl~~~~~---~~~l~~~~~~~--~~pvVlDa~g~----~-l----~~~~~~-~~~~~~vItP 147 (272)
T TIGR00196 88 ELLE-----RYDVVVIGPGLGQDPS---FKKAVEEVLEL--DKPVVLDADAL----N-L----LTYDKP-KREGEVILTP 147 (272)
T ss_pred hhhc-----cCCEEEEcCCCCCCHH---HHHHHHHHHhc--CCCEEEEhHHH----H-H----Hhhccc-ccCCCEEECC
Confidence 2222 357778877 655433 56677788877 88999998321 1 1 110000 1346899999
Q ss_pred CHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHH
Q 024300 156 NQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDL 234 (269)
Q Consensus 156 N~~E~~~l~g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDa 234 (269)
|..|++.|+|....+.++..+++++|.+.+...|+++ | ..+.++... +..+.. ....+ .+++|+||+
T Consensus 148 N~~El~~L~g~~~~~~~~~~~aa~~l~~~~~~vVv~k-G-~~~~i~~~~---------~~~~~~-~~~~~~~~~~GaGD~ 215 (272)
T TIGR00196 148 HPGEFKRLLGLVNEIQGDRLEAAQDIAQKLQAVVVLK-G-AADVIAAPD---------GDLWIN-KTGNAALAKGGTGDV 215 (272)
T ss_pred CHHHHHHHhCCchhhhhhHHHHHHHHHHHhCCEEEEc-C-CCCEEEcCC---------CeEEEE-CCCCCccCCCCchHH
Confidence 9999999999876666788888999987655444544 4 355544311 134433 33344 478999999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHH
Q 024300 235 MTALLLGWSNKYRDNLDIAAELA 257 (269)
Q Consensus 235 f~a~~~~~l~~~g~~~~~a~~~A 257 (269)
|+|.+++.+++ |.++.+|+..|
T Consensus 216 lag~iaa~la~-g~~~~~A~~~a 237 (272)
T TIGR00196 216 LAGLIGGLLAQ-NLDPFDAACNA 237 (272)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHH
Confidence 99999999998 99999999777
No 49
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.88 E-value=1e-21 Score=170.31 Aligned_cols=160 Identities=23% Similarity=0.190 Sum_probs=122.7
Q ss_pred ccEEEEcccC--ChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCC-hhhHHHHHHhccCCCcEEcCCHHHHHHh
Q 024300 87 YTHLLTGYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAEQL 163 (269)
Q Consensus 87 ~~~i~~G~l~--~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~-~~~~~~~~~~ll~~~dii~pN~~E~~~l 163 (269)
++.+.++..+ +....+.+.++++.+++. ++++++||+.+.. .|.. ....+.+++ +++++|++++|+.|+..+
T Consensus 121 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~v~~d~~~~~~--~~~~~~~~~~~~~~-~l~~~d~l~~n~~E~~~l 195 (295)
T cd01167 121 ADILHFGSIALASEPSRSALLELLEAAKKA--GVLISFDPNLRPP--LWRDEEEARERIAE-LLELADIVKLSDEELELL 195 (295)
T ss_pred CCEEEEechhhccchHHHHHHHHHHHHHHc--CCEEEEcCCCChh--hcCCHHHHHHHHHH-HHHhCCEEEecHHHHHHH
Confidence 4555555432 223346677889999887 8999999976521 2211 122334454 889999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHh
Q 024300 164 TGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGW 242 (269)
Q Consensus 164 ~g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~ 242 (269)
++.. +..++++.+.++|++.+++|.| .+|++++.+ ++.+++++++++ +||+||||+|+|+|+++
T Consensus 196 ~~~~-----~~~~~~~~l~~~g~~~vvvt~G-~~G~~~~~~---------~~~~~~~a~~~~vvDttGAGD~f~a~~~~~ 260 (295)
T cd01167 196 FGEE-----DPEEIAALLLLFGLKLVLVTRG-ADGALLYTK---------GGVGEVPGIPVEVVDTTGAGDAFVAGLLAQ 260 (295)
T ss_pred hCCC-----CHHHHHHHHhhcCCCEEEEecC-CcceEEEEC---------CcceeeCCCCcceeeCCCccHHHHHHHHHH
Confidence 9863 2334566777889999999998 789988754 245677777766 69999999999999999
Q ss_pred hccCCC-------CHHHHHHHHHHHHHHHhhc
Q 024300 243 SNKYRD-------NLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 243 l~~~g~-------~~~~a~~~A~~~~~~~l~~ 267 (269)
|++ |+ ++++|+++|++++...+++
T Consensus 261 l~~-g~~~~~~~~~~~~a~~~a~~~aa~~~~~ 291 (295)
T cd01167 261 LLS-RGLLALDEDELAEALRFANAVGALTCTK 291 (295)
T ss_pred HHh-CCcccccHHHHHHHHHHHHHhhHHHhcc
Confidence 998 99 9999999999999998876
No 50
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.88 E-value=1.1e-21 Score=177.73 Aligned_cols=215 Identities=19% Similarity=0.128 Sum_probs=144.1
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEEeecCCCC----------CCc---cee--ecCHHHHHHHHHHHHhCCCc
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGY----------PTF---KGQ--VLNGQQLCDLIEGLEANNLL 85 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g~----------~~~---~~~--~~~~~~~~~~~~~~~~~~~~ 85 (269)
..|.+|.|. +++.|++.||++..+.... .+||. ..+ .|. .++.+++ ..+.+++.+++
T Consensus 153 ~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~--~~Tg~~~ilv~~~gertii~~~Ga~~~l~~~~~--~~~~i~~adiv 228 (426)
T PLN02813 153 MAGSVGSDPLGDFYRTKLRRANVHFLSQPVKD--GTTGTVIVLTTPDAQRTMLSYQGTSSTVNYDSC--LASAISKSRVL 228 (426)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCcccceecCC--CCceEEEEEEcCCCCceeeeccCchhhCCcccc--CHHHHhcCCEE
Confidence 457777764 6678999999987764321 12221 111 111 1222221 12334544432
Q ss_pred cccEEEEcccC-ChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhh
Q 024300 86 YYTHLLTGYIG-SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (269)
Q Consensus 86 ~~~~i~~G~l~-~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~ 164 (269)
+ +.|++. .+...+.+.++++.++++ ++++++||.... ......+.+.+.+++++|++++|++|+..|+
T Consensus 229 ~----l~g~~~~~~~~~~~~~~~~~~ak~~--g~~v~~d~s~~~-----~~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~ 297 (426)
T PLN02813 229 V----VEGYLWELPQTIEAIAQACEEAHRA--GALVAVTASDVS-----CIERHRDDFWDVMGNYADILFANSDEARALC 297 (426)
T ss_pred E----EEeeecCCCchHHHHHHHHHHHHHc--CCEEEEECCCcc-----hhhhhHHHHHHHHHhcCCEEEeCHHHHHHHh
Confidence 2 235432 123357788899999988 999999975321 1111122233336689999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhh
Q 024300 165 GFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWS 243 (269)
Q Consensus 165 g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l 243 (269)
|... .++.+++++.|. .+++.|++|.| .+|+++..+ ++.+++++++++ +||+||||+|+|+|++++
T Consensus 298 g~~~--~~~~~~a~~~L~-~~~~~VVVT~G-~~Ga~~~~~---------~~~~~~pa~~v~vVDTtGAGDAF~Agfl~~l 364 (426)
T PLN02813 298 GLGS--EESPESATRYLS-HFCPLVSVTDG-ARGSYIGVK---------GEAVYIPPSPCVPVDTCGAGDAYAAGILYGL 364 (426)
T ss_pred CCCC--CCCHHHHHHHHH-cCCCEEEEEeC-CCCeEEEEC---------CEEEEeCCCCCCcccCCChHHHHHHHHHHHH
Confidence 8632 134556666664 57899999998 799887654 256667766666 699999999999999999
Q ss_pred ccCCC-CHHHHHHHHHHHHHHHhhcC
Q 024300 244 NKYRD-NLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 244 ~~~g~-~~~~a~~~A~~~~~~~l~~~ 268 (269)
.+ |+ ++++++++|++++..++++.
T Consensus 365 ~~-G~~~l~~al~~A~a~Aa~~v~~~ 389 (426)
T PLN02813 365 LR-GVSDLRGMGELAARVAATVVGQQ 389 (426)
T ss_pred Hc-CCCCHHHHHHHHHHHHHHHHccc
Confidence 98 99 99999999999999988763
No 51
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.88 E-value=3.7e-21 Score=166.51 Aligned_cols=214 Identities=18% Similarity=0.133 Sum_probs=142.6
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEE--------eecCCCCCCc---ce--eecCHHHHHHHHHHHHhCCCccc
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQ--------FSNHTGYPTF---KG--QVLNGQQLCDLIEGLEANNLLYY 87 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~--------~~~~~g~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~ 87 (269)
..|.+|.|. +...|++.||+++.+.... ..+..|...+ .+ ..++.+.++.. .+.. .
T Consensus 54 ~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~-----~ 126 (289)
T cd01944 54 NAGPLGNGNWADQIRQAMRDEGIEILLPPRGGDDGGCLVALVEPDGERSFISISGAEQDWSTEWFATL--TVAP-----Y 126 (289)
T ss_pred EEEEecCChHHHHHHHHHHHcCCccccccccCCCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhccc--cCCC-----C
Confidence 577888666 6678899999998875431 0011221111 11 12222333221 1222 4
Q ss_pred cEEEE-cccC--ChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhh
Q 024300 88 THLLT-GYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (269)
Q Consensus 88 ~~i~~-G~l~--~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~ 164 (269)
+.+.+ |+.. .....+.+.++++.++ . ++++++||+++.. . ...+ .+++ +++++|+++||++|+..|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~v~~D~~~~~~--~-~~~~---~~~~-~l~~~d~~~~n~~E~~~l~ 196 (289)
T cd01944 127 DYVYLSGYTLASENASKVILLEWLEALP-A--GTTLVFDPGPRIS--D-IPDT---ILQA-LMAKRPIWSCNREEAAIFA 196 (289)
T ss_pred CEEEEeCccccCcchhHHHHHHHHHhcc-C--CCEEEEcCccccc--c-cCHH---HHHH-HHhcCCEEccCHHHHHHHh
Confidence 44433 3322 2223556666666654 3 7899999987632 1 2222 2333 7899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhh
Q 024300 165 GFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWS 243 (269)
Q Consensus 165 g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l 243 (269)
|.... +...+++.+.+.+++.|++|.| .+|+++.... ++.++.++++++ +||+||||+|+|+|++++
T Consensus 197 g~~~~---~~~~~~~~~~~~~~~~vvvt~G-~~Ga~~~~~~--------~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~~ 264 (289)
T cd01944 197 ERGDP---AAEASALRIYAKTAAPVVVRLG-SNGAWIRLPD--------GNTHIIPGFKVKAVDTIGAGDTHAGGMLAGL 264 (289)
T ss_pred CCCCc---chHHHHHHHHhccCCeEEEEEC-CCcEEEEecC--------CCeEEecCCCCCCccCCCchHHHHHHHHHHH
Confidence 86432 2234466777888999999998 6899887531 245566767777 699999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 244 NKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 244 ~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
.+ |+++++|+++|++++...+++.
T Consensus 265 ~~-g~~~~~a~~~a~a~aa~~~~~~ 288 (289)
T cd01944 265 AK-GMSLADAVLLANAAAAIVVTRS 288 (289)
T ss_pred Hc-CCCHHHHHHHHHHHHHhhhccC
Confidence 98 9999999999999999988763
No 52
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.87 E-value=3.8e-21 Score=167.64 Aligned_cols=212 Identities=20% Similarity=0.189 Sum_probs=146.6
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEEeecCC----------CCCCc-c----e--eecCHHHHHHHHHHHHhCC
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHT----------GYPTF-K----G--QVLNGQQLCDLIEGLEANN 83 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~----------g~~~~-~----~--~~~~~~~~~~~~~~~~~~~ 83 (269)
..|.+|.|. +.+.|++.||++.++.... ..++ |-..+ . + ..++.+++ +.+.+.
T Consensus 47 ~v~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~-~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~- 120 (304)
T PRK09434 47 FIGRVGDDPFGRFMQQTLQDEGVDTTYLRLDP-AHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDL----PPFRQG- 120 (304)
T ss_pred EEEEecCchHHHHHHHHHHHcCCCCcceEEcC-CCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHh----hhhcCC-
Confidence 577777764 5668899999988775322 0111 21111 0 0 01122222 223333
Q ss_pred CccccEEEEcccC--ChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCC-hhhHHHHHHhccCCCcEEcCCHHHH
Q 024300 84 LLYYTHLLTGYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEA 160 (269)
Q Consensus 84 ~~~~~~i~~G~l~--~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~-~~~~~~~~~~ll~~~dii~pN~~E~ 160 (269)
+.+.++.+. .......+.++++.++++ +.++++||+.+.. .|.. ++..+.+.+ +++++|++++|++|+
T Consensus 121 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~D~~~~~~--~~~~~~~~~~~~~~-~l~~~dil~~n~~e~ 191 (304)
T PRK09434 121 ----EWLHLCSIALSAEPSRSTTFEAMRRIKAA--GGFVSFDPNLRED--LWQDEAELRECLRQ-ALALADVVKLSEEEL 191 (304)
T ss_pred ----CEEEEccccccCchHHHHHHHHHHHHHHc--CCEEEECCCCChh--hccCHHHHHHHHHH-HHHhcceeeCCHHHH
Confidence 333333221 222345667888899987 8999999987632 3322 233444554 889999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHh-cCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHH
Q 024300 161 EQLTGFRIGSEADGREACKILHA-AGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTAL 238 (269)
Q Consensus 161 ~~l~g~~~~~~~~~~~a~~~l~~-~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~ 238 (269)
..++|. ++..++++.+.+ .+++.|++|.| .+|++++.+ ++.+++++++++ +||+||||+|.|+
T Consensus 192 ~~l~g~-----~~~~~~~~~l~~~~g~~~vvvt~G-~~G~~~~~~---------~~~~~~~~~~~~~vDttGAGD~f~ag 256 (304)
T PRK09434 192 CFLSGT-----SQLEDAIYALADRYPIALLLVTLG-AEGVLVHTR---------GQVQHFPAPSVDPVDTTGAGDAFVAG 256 (304)
T ss_pred HHHhCC-----CCHHHHHHHHHhhcCCcEEEEEec-CCceEEEeC---------CceeEeCCCCCCCCcCCCchHHHHHH
Confidence 999986 255677888876 68899999998 689988754 255677776666 6999999999999
Q ss_pred HHHhhccCCC------CHHHHHHHHHHHHHHHhhc
Q 024300 239 LLGWSNKYRD------NLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 239 ~~~~l~~~g~------~~~~a~~~A~~~~~~~l~~ 267 (269)
|++++++ |+ ++++|+++|++++...+++
T Consensus 257 ~~~~l~~-g~~~~~~~~~~~a~~~a~~~Aa~~v~~ 290 (304)
T PRK09434 257 LLAGLSQ-AGLWTDEAELAEIIAQAQACGALATTA 290 (304)
T ss_pred HHHHHHc-CCCccchHHHHHHHHHHHHHHHHHHcc
Confidence 9999998 86 8999999999999998875
No 53
>PLN02548 adenosine kinase
Probab=99.87 E-value=6.9e-21 Score=168.11 Aligned_cols=218 Identities=16% Similarity=0.155 Sum_probs=139.6
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEEeecCCCCC---------Cc--c-e--eecCHHHHHH--HHHHHHhCCC
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYP---------TF--K-G--QVLNGQQLCD--LIEGLEANNL 84 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g~~---------~~--~-~--~~~~~~~~~~--~~~~~~~~~~ 84 (269)
..|.+|.|. +++.|++.||+++++.... ..|+.. .+ + + ..++.+.++. ..+.+...++
T Consensus 74 ~ig~vG~D~~g~~i~~~L~~~gVd~~~~~~~~--~~T~~~~i~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (332)
T PLN02548 74 YMGCIGKDKFGEEMKKCATAAGVNVHYYEDES--TPTGTCAVLVVGGERSLVANLSAANCYKVEHLKKPENWALVEKAKF 151 (332)
T ss_pred EEEEEcCChhHHHHHHHHHHcCCceeeeccCC--CCCceEEEEEecCCceeeeccchhhcCCHHHhcChhhHhHHhhCCE
Confidence 567777765 6678899999988774311 123211 11 0 0 0123333321 1223444343
Q ss_pred ccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhh
Q 024300 85 LYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (269)
Q Consensus 85 ~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~ 164 (269)
++ ..|+.+. ...+.+..+++.++++ +.++++|+... .|. +...+.+++ +++++|+++||+.|+..|+
T Consensus 152 v~----~~g~~~~-~~~~~~~~~~~~a~~~--g~~~~~~~~~~----~~~-~~~~~~l~~-~l~~~dil~~n~~E~~~l~ 218 (332)
T PLN02548 152 YY----IAGFFLT-VSPESIMLVAEHAAAN--NKTFMMNLSAP----FIC-EFFKDQLME-ALPYVDFLFGNETEARTFA 218 (332)
T ss_pred EE----EEEEEcc-CCHHHHHHHHHHHHHc--CCEEEEECCCh----hHH-HHhHHHHHH-HHhhCCEEEecHHHHHHHh
Confidence 32 2233221 2235667778888887 77877776321 111 112234555 7889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh----c--CCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEc---cccC-CCCCCchHH
Q 024300 165 GFRIGSEADGREACKILHA----A--GPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVI---PKIP-AYFTGTGDL 234 (269)
Q Consensus 165 g~~~~~~~~~~~a~~~l~~----~--g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~dt~GaGDa 234 (269)
+....+.++..++++.+.+ . +++.|++|.| .+|++++.+ ++.+++++ +.++ +||+||||+
T Consensus 219 g~~~~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G-~~G~~~~~~---------~~~~~~pa~~~~~~~vvDttGAGDa 288 (332)
T PLN02548 219 KVQGWETEDVEEIALKISALPKASGTHKRTVVITQG-ADPTVVAED---------GKVKEFPVIPLPKEKLVDTNGAGDA 288 (332)
T ss_pred CccCCCcccHHHHHHHHHHhhhhccccCCEEEEEeC-CCcEEEEEC---------CeEEEeccccCCcCccccCCCchHH
Confidence 8643333344444444433 2 5789999998 689988753 24555554 2334 699999999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 235 MTALLLGWSNKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 235 f~a~~~~~l~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
|.|+|++++++ |+++++|+++|+++++..+++.
T Consensus 289 F~ag~l~~l~~-g~~l~eal~~a~aaAa~~v~~~ 321 (332)
T PLN02548 289 FVGGFLSQLVQ-GKDIEECVRAGNYAANVIIQRS 321 (332)
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999998 9999999999999999998863
No 54
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.87 E-value=1.9e-21 Score=177.73 Aligned_cols=244 Identities=15% Similarity=0.109 Sum_probs=156.3
Q ss_pred CCccccCCCCCCCcEEEEe---cc--cccCcccccc----chHHHHhcCCceeeeceEEeecCCCC-----------CCc
Q 024300 3 PPILSLALPSETGRVLSIQ---SH--TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGY-----------PTF 62 (269)
Q Consensus 3 ~~~~~~~~~~~~~~vl~i~---g~--~~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g~-----------~~~ 62 (269)
++-+...+|++..+|.+.. |. ...|.+|.|. +++.|+.+||+++++.... ...|+. ..+
T Consensus 164 ~~~f~~~~GGa~aNVAvaLARLG~~vafIG~VGdD~fG~~l~~~L~~~GVDts~v~~~~-~~~Tgla~V~v~~~~~gr~~ 242 (496)
T PLN02543 164 PPEFARAPGGPPSNVAISHVRLGGRAAFMGKVGDDDFGEELVLMMNKERVQTRAVKFDE-NAKTACSRMKIKFRDGGKMV 242 (496)
T ss_pred CCeeEeccCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecC-CCCCceEEEEEEeCCCCCEE
Confidence 3445555666665554322 22 3688999877 6778999999999886432 011221 111
Q ss_pred c-----e--eecCHHHHHHHHHHHHhCCCccccEEEEcccC--ChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCcc
Q 024300 63 K-----G--QVLNGQQLCDLIEGLEANNLLYYTHLLTGYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLY 133 (269)
Q Consensus 63 ~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~--~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~ 133 (269)
. + ..+..++++. +.+.+.++ +.++.+. ++...+.+.++++.++++ +++|+|||+++.. +|
T Consensus 243 ~~~~~~gA~~~L~~~di~~--~~l~~a~i-----lh~~~~~l~~~~~~~a~~~al~~Ak~~--G~~VsfDpN~R~~--LW 311 (496)
T PLN02543 243 AETVKEAAEDSLLASELNL--AVLKEARM-----FHFNSEVLTSPSMQSTLFRAIELSKKF--GGLIFFDLNLPLP--LW 311 (496)
T ss_pred EEecCCCHHHhCChhhcCH--hHhCCCce-----EEECChhhcCchHHHHHHHHHHHHHHC--CCEEEEeCCCCcc--cc
Confidence 0 0 0122233321 23444444 4444322 233457788899999988 9999999998743 44
Q ss_pred CC-hhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCC------CHH------------------HHHHHHHHHHhcCCCe
Q 024300 134 VP-SELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG------SEA------------------DGREACKILHAAGPAK 188 (269)
Q Consensus 134 ~~-~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~------~~~------------------~~~~a~~~l~~~g~~~ 188 (269)
-. ++..+.+.+ +++++|++++|++|++.|+|.+.. +.+ +.+. +..+.+.|++.
T Consensus 312 ~~~~~~~~~i~~-~l~~aDIl~~SeeEa~~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~ 389 (496)
T PLN02543 312 RSRDETRELIKK-AWNEADIIEVSRQELEFLLDEDYYERKRNYPPQYYAESFEQTKNWRDYYHYTPEE-IAPLWHDGLKL 389 (496)
T ss_pred CCHHHHHHHHHH-HHHhCCEEEecHHHHHHHhCCCcccccccccchhhhhhhhhhhcccccccCCHHH-HHHHHHCCCCE
Confidence 32 344555655 899999999999999999986411 000 1122 45666778999
Q ss_pred EEEEeeecCCcEEEEeeeccCCCCCCceEE---EEccccCCCCCCchHHHHHHHHHhhcc------CCCCHHHHHHHHHH
Q 024300 189 VVITSINIDGNLFLIGSHQKEKGQSPEQFK---IVIPKIPAYFTGTGDLMTALLLGWSNK------YRDNLDIAAELAVS 259 (269)
Q Consensus 189 Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dt~GaGDaf~a~~~~~l~~------~g~~~~~a~~~A~~ 259 (269)
|+||.| .+|++++..... +.... +..+...+|||||||+|+|||+++|.+ .+.++++++++|++
T Consensus 390 VVVT~G-~~Ga~~~t~~~~------g~v~~~~~~~v~~~~VDTTGAGDAF~AGfL~~Ll~~~~~~~~g~~l~ealrfAnA 462 (496)
T PLN02543 390 LLVTDG-TLRIHYYTPKFD------GVVVGTEDVLITPFTCDRTGSGDAVVAAIMRKLTTCPEMFEDQDVLERQLRFAVA 462 (496)
T ss_pred EEEEcC-CCcEEEEECCCc------ccccccccccCCCCCcCCCchHHHHHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 999998 799988754110 01100 111222379999999999999999983 15789999999999
Q ss_pred HHHHHhhc
Q 024300 260 SLQVLLLL 267 (269)
Q Consensus 260 ~~~~~l~~ 267 (269)
+++.++++
T Consensus 463 aaAl~vt~ 470 (496)
T PLN02543 463 AGIISQWT 470 (496)
T ss_pred HHHHHHcC
Confidence 99987765
No 55
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.86 E-value=7.8e-21 Score=166.20 Aligned_cols=212 Identities=24% Similarity=0.266 Sum_probs=144.8
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEEeecCCCCC----------Cc---ce---eecCHHHHHHHHHHHHhCCC
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYP----------TF---KG---QVLNGQQLCDLIEGLEANNL 84 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g~~----------~~---~~---~~~~~~~~~~~~~~~~~~~~ 84 (269)
..|.+|.|. .++.+++.||+++++..... .+|+.. .+ .+ ..+++++++. ..+...++
T Consensus 56 ~~~~vG~D~~g~~~~~~l~~~GVd~~~~~~~~~-~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~--~~~~~~~~ 132 (311)
T COG0524 56 LIGAVGDDDFGEFLLEELRKEGVDTSHVVTDEG-ATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDE--DELAGADV 132 (311)
T ss_pred EEEEecCcHHHHHHHHHHHHcCCccceEEEcCC-CcceEEEEEEcCCCceeEEEECCcccccCChHHcCh--HHHhhcCe
Confidence 567777655 66778999999988875541 123311 11 01 1144444442 23333333
Q ss_pred ccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhh
Q 024300 85 LYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (269)
Q Consensus 85 ~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~ 164 (269)
++ ++.+......+.+..+++.++++ +.++++|++++... | . .+.+.. +++++|++++|++|++.++
T Consensus 133 ~~-----~~~~~l~~~~~~~~~~~~~a~~~--g~~v~~d~~~~~~~--~-~---~~~~~~-~l~~~d~~~~n~~E~~~l~ 198 (311)
T COG0524 133 LH-----ISGIQLEIPPEALLAALELAKAA--GVTVSFDLNPRPAL--W-D---RELLEE-LLALADILFPNEEEAELLT 198 (311)
T ss_pred ee-----EEEeecCCChHHHHHHHHHHHHc--CCeEEEecCCCccc--c-c---hhhHHH-HHhhCCEEeCCHHHHHHHh
Confidence 33 22221111127788899999998 99999999888531 1 1 233344 8899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCc--eEEEEccccC-CCCCCchHHHHHHHHH
Q 024300 165 GFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPE--QFKIVIPKIP-AYFTGTGDLMTALLLG 241 (269)
Q Consensus 165 g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~dt~GaGDaf~a~~~~ 241 (269)
|. . ++..++...++..+.+.|++|.| .+|++++... ++ ....+.++++ +|||||||+|.|+|++
T Consensus 199 g~-~---~~~~~~~~~~~~~~~~~vvvt~G-~~Ga~~~~~~--------~~~~~~~~~~~~~~vvDttGAGDaF~agfl~ 265 (311)
T COG0524 199 GL-E---EDAEAAAALLLAKGVKTVVVTLG-AEGAVVFTGG--------GEVTVPVPAAFKVKVVDTTGAGDAFAAGFLA 265 (311)
T ss_pred CC-C---ccHHHHHHHHhhcCCCEEEEEeC-CCcEEEEeCC--------CceeeccCCCCccccccCCCchHHHHHHHHH
Confidence 86 1 23333346677889999999998 6899988642 11 2222245555 6999999999999999
Q ss_pred hhccCCCCHHHHHHHHHHHHHHHhhc
Q 024300 242 WSNKYRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 242 ~l~~~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
++.+ |+++++++++|+++++..+++
T Consensus 266 ~~~~-g~~~~~a~~~a~a~aa~~~~~ 290 (311)
T COG0524 266 GLLE-GKSLEEALRFANAAAALAVTR 290 (311)
T ss_pred HHHc-CCCHHHHHHHHHHHhhhhhcc
Confidence 9999 999999999999998887754
No 56
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.86 E-value=4.8e-20 Score=159.30 Aligned_cols=212 Identities=20% Similarity=0.198 Sum_probs=142.0
Q ss_pred cccCcccccc----chHHHHhcCCceeeeceEEeecCCCCC----------Ccce------eecCHHHHHHHHHHHHhCC
Q 024300 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYP----------TFKG------QVLNGQQLCDLIEGLEANN 83 (269)
Q Consensus 24 ~~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g~~----------~~~~------~~~~~~~~~~~~~~~~~~~ 83 (269)
...|.+|.|. .++.|++.||++..+. .. ...|+.. .+.. ..++.+.++.+.+.+.+
T Consensus 53 ~~~~~lG~D~~g~~i~~~L~~~gI~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 128 (288)
T cd01941 53 ALLSAVGDDSEGESILEESEKAGLNVRGIV-FE-GRSTASYTAILDKDGDLVVALADMDIYELLTPDFLRKIREALKE-- 128 (288)
T ss_pred EEEEEEecCccHHHHHHHHHHcCCccceee-eC-CCCcceEEEEECCCCCEEEEEechHhhhhCCHHHHHHHHHHHhc--
Confidence 3567777664 5667899999988875 21 1122211 0100 01222233333334444
Q ss_pred CccccEEEE-cccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHH
Q 024300 84 LLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQ 162 (269)
Q Consensus 84 ~~~~~~i~~-G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~ 162 (269)
++.+.+ +.. ..+.+..+++.++++ +.++++||+.... .. + .+ + +++++|++++|+.|+..
T Consensus 129 ---~~~v~~~~~~----~~~~~~~~~~~a~~~--~~~v~~d~~~~~~----~~-~---~~-~-~~~~~dii~~n~~E~~~ 189 (288)
T cd01941 129 ---AKPIVVDANL----PEEALEYLLALAAKH--GVPVAFEPTSAPK----LK-K---LF-Y-LLHAIDLLTPNRAELEA 189 (288)
T ss_pred ---CCEEEEeCCC----CHHHHHHHHHhhhhc--CCcEEEEccchHH----hc-c---ch-h-hcccceEEeCCHHHHHH
Confidence 344433 322 234566778888877 8899999854321 10 1 11 2 78999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEc-cccC-CCCCCchHHHHHHHH
Q 024300 163 LTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVI-PKIP-AYFTGTGDLMTALLL 240 (269)
Q Consensus 163 l~g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~dt~GaGDaf~a~~~ 240 (269)
+++....+.+...++++.+...+++.|++|.| .+|++++..... +..++++. +..+ +||+||||+|.|+|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvit~G-~~Ga~~~~~~~~------~~~~~~~~~~~~~~vDttGAGDaf~a~~~ 262 (288)
T cd01941 190 LAGALIENNEDENKAAKILLLPGIKNVIVTLG-AKGVLLSSREGG------VETKLFPAPQPETVVNVTGAGDAFVAGLV 262 (288)
T ss_pred HhCcccCCchhHHHHHHHHHHcCCcEEEEEeC-CCcEEEEecCCC------ceeEEecCCCCccceeCCCcHHHHHHHHH
Confidence 99876543344455667777889999999998 689988753000 24556666 3555 699999999999999
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHHhh
Q 024300 241 GWSNKYRDNLDIAAELAVSSLQVLLL 266 (269)
Q Consensus 241 ~~l~~~g~~~~~a~~~A~~~~~~~l~ 266 (269)
+++++ |+++++|+++|+++++..++
T Consensus 263 ~~l~~-g~~~~~al~~a~~~Aa~~~~ 287 (288)
T cd01941 263 AGLLE-GMSLDDSLRFAQAAAALTLE 287 (288)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHHHhc
Confidence 99998 99999999999999998765
No 57
>PRK15074 inosine/guanosine kinase; Provisional
Probab=99.86 E-value=7.7e-21 Score=171.67 Aligned_cols=220 Identities=19% Similarity=0.091 Sum_probs=142.7
Q ss_pred cccCccccc-c----chHHHH--hcCCceeeeceEEeecCCCCC----------Ccc---e--eecCHHHHHHHHHHHHh
Q 024300 24 TVQGYVGNK-S----AVFPLQ--LLGYDVDPIHSVQFSNHTGYP----------TFK---G--QVLNGQQLCDLIEGLEA 81 (269)
Q Consensus 24 ~~~g~~G~~-a----~~~~l~--~~Gv~~~~i~~~~~~~~~g~~----------~~~---~--~~~~~~~~~~~~~~~~~ 81 (269)
...|.+|.| . .++.|+ ..||++..+.... .+||.. .+. | ..++.++++. +.+.+
T Consensus 111 ~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~--~~TG~~~VlV~~dGeRt~~t~~GA~~~Lt~edld~--~~i~~ 186 (434)
T PRK15074 111 VLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVD--GPIGRCFTLISEDGERTFAISPGHMNQLRPESIPE--DVIAG 186 (434)
T ss_pred EEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcC--CCCEEEEEEECCCCCEEEEEecChhhcCChhHCCH--hHhcc
Confidence 468889976 2 455675 5799988875322 233311 110 1 1344444442 23554
Q ss_pred CCCccccEEEEcccCC----hhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCH
Q 024300 82 NNLLYYTHLLTGYIGS----VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQ 157 (269)
Q Consensus 82 ~~~~~~~~i~~G~l~~----~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~ 157 (269)
.++++ +.|+... ....+++.++++.++++ +++|+|||+.+.. .+..+ +.+.+.+++++|++++|+
T Consensus 187 a~ily----l~Gy~l~~~~~~~~~~a~~~al~~Ake~--G~~VslD~s~~~~--v~~~~---~~~~e~l~~~vDILf~Ne 255 (434)
T PRK15074 187 ASALV----LTAYLVRCKPGEPMPEATMKAIEYAKKH--NVPVVLTLGTKFV--IEDNP---QWWQEFLKEHVSILAMNE 255 (434)
T ss_pred CCEEE----EeeeehhcccCCCcHHHHHHHHHHHHHc--CCEEEEECcchhh--ccccH---HHHHHHHHhcCCEEEcCH
Confidence 44433 3344321 12356778899999988 9999999976521 00111 122233667999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCc----------------------
Q 024300 158 FEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPE---------------------- 215 (269)
Q Consensus 158 ~E~~~l~g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~---------------------- 215 (269)
+|+..|+|.. +.+++++.+.+ +++.|+||.| .+|+++.........+ +.
T Consensus 256 eEa~~LtG~~-----d~eea~~~L~~-~~~~VVVTlG-~~Ga~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 326 (434)
T PRK15074 256 DEAEALTGES-----DPLLASDKALD-WVDLVLCTAG-PIGLYMAGYTEDEAKR--ETQHPLLPGAIAEFNRYEFSRAMR 326 (434)
T ss_pred HHHHHHhCCC-----CHHHHHHHHHc-CCCEEEEEEC-CCCEEEEecccccccC--ceeeeccccccccccchhcccchh
Confidence 9999999852 45566666664 4799999998 7999886421100000 01
Q ss_pred ----------eEEEEcc---ccC-CCCCCchHHHHHHHHHhhccCCC--------------------CHHHHHHHHHHHH
Q 024300 216 ----------QFKIVIP---KIP-AYFTGTGDLMTALLLGWSNKYRD--------------------NLDIAAELAVSSL 261 (269)
Q Consensus 216 ----------~~~~~~~---~~~-~dt~GaGDaf~a~~~~~l~~~g~--------------------~~~~a~~~A~~~~ 261 (269)
.+++++. ++. +|||||||+|+|+|+++|.+ |+ ++.+|+++|+.++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~vDttGAGD~f~~gfl~~l~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a 405 (434)
T PRK15074 327 KKDCQNPLRVYSHIAPYMGGPEKIMNTNGAGDGALSALLHDITA-NSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVS 405 (434)
T ss_pred ccccccccccccccCcccCCCCcceeCCCcHHHHHHHHHHHHHC-CCcccccccccccccccccccCCHHHHHHHHHHHH
Confidence 1134443 344 69999999999999999998 87 8999999999999
Q ss_pred HHHhhcC
Q 024300 262 QVLLLLM 268 (269)
Q Consensus 262 ~~~l~~~ 268 (269)
+.++++.
T Consensus 406 ~~vi~~~ 412 (434)
T PRK15074 406 YEVLNQH 412 (434)
T ss_pred HHHHhhc
Confidence 9999864
No 58
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.86 E-value=1.5e-20 Score=160.61 Aligned_cols=201 Identities=16% Similarity=0.130 Sum_probs=139.2
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEEeecCCCCC---------Cc----ceeecCHHHHHHHHHHHHhCCCccc
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYP---------TF----KGQVLNGQQLCDLIEGLEANNLLYY 87 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g~~---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (269)
..|.+|.|. ..+.|++.||++..+.... .+|+.. .+ .+...+....+..++.+.+ +
T Consensus 41 ~~~~vG~D~~g~~i~~~l~~~gI~~~~v~~~~--~~t~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 113 (264)
T cd01940 41 YIGAVGNDDAGAHVRSTLKRLGVDISHCRVKE--GENAVADVELVDGDRIFGLSNKGGVAREHPFEADLEYLSQ-----F 113 (264)
T ss_pred EEecccCchhHHHHHHHHHHcCCChhheEEcC--CCCceEEEEecCCceEEEeecCCcHHhcccCcccHhHHhc-----C
Confidence 577777654 5668899999988776432 122211 11 0100000000112233443 4
Q ss_pred cEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCC
Q 024300 88 THLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR 167 (269)
Q Consensus 88 ~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~ 167 (269)
+.+.++..+. .+.+.++++.++++ +++|++||+.+.. .+ .+.+ +++++|++.+|..|..
T Consensus 114 ~~v~~~~~~~---~~~~~~~~~~a~~~--g~~v~~D~~~~~~------~~---~~~~-~~~~~d~~~~~~~~~~------ 172 (264)
T cd01940 114 DLVHTGIYSH---EGHLEKALQALVGA--GALISFDFSDRWD------DD---YLQL-VCPYVDFAFFSASDLS------ 172 (264)
T ss_pred CEEEEccccc---HHHHHHHHHHHHHc--CCEEEEcCcccCC------HH---HHHh-hcccCCEEEechhhcC------
Confidence 5555554432 35677888899887 8999999976521 11 2333 7899999999987652
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhccC
Q 024300 168 IGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKY 246 (269)
Q Consensus 168 ~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~~~ 246 (269)
.++..++++.+++.+++.|++|.| .+|+++..+ ++.++++.++++ +||+||||+|.|+|++++.+
T Consensus 173 ---~~~~~~~~~~l~~~~~~~vvvT~G-~~G~~~~~~---------~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~- 238 (264)
T cd01940 173 ---DEEVKAKLKEAVSRGAKLVIVTRG-EDGAIAYDG---------AVFYSVAPRPVEVVDTLGAGDSFIAGFLLSLLA- 238 (264)
T ss_pred ---cchHHHHHHHHHHcCCCEEEEEEC-CCCeEEEeC---------CeEEecCCcCCCCCCCCCchHHHHHHHHHHHHh-
Confidence 135566778888889999999998 799988753 245666666666 69999999999999999998
Q ss_pred CCC-HHHHHHHHHHHHHHHhhc
Q 024300 247 RDN-LDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 247 g~~-~~~a~~~A~~~~~~~l~~ 267 (269)
|++ +++|+++|++++...+++
T Consensus 239 g~~~~~~al~~a~~~aa~~~~~ 260 (264)
T cd01940 239 GGTAIAEAMRQGAQFAAKTCGH 260 (264)
T ss_pred CCchHHHHHHHHHHHHHHHhcc
Confidence 999 999999999999988775
No 59
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.86 E-value=9e-21 Score=164.66 Aligned_cols=216 Identities=25% Similarity=0.258 Sum_probs=148.0
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEEe---------ecCCCCCCc--ce---eecCHHHHHHHHHHHHhCCCcc
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQF---------SNHTGYPTF--KG---QVLNGQQLCDLIEGLEANNLLY 86 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~---------~~~~g~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~ 86 (269)
..+.+|.|. ..+.|+..||+++.+....- .+..|...+ .. ...+.+.+ ..+.+.+.
T Consensus 55 ~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~---- 128 (301)
T PF00294_consen 55 LIGKVGDDFFGEIILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSPGANSDLTPDEL--DEEAIDEA---- 128 (301)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEEGGGGGGGHHHH--HHHHHHTE----
T ss_pred EEeeccCcchhhhhhhccccccccccccccccccccceeEeeecccccceeeeccccccccccccc--cccccccc----
Confidence 456666665 56678999999988863320 011121111 00 12222222 33445543
Q ss_pred ccEEEE-c-ccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhh
Q 024300 87 YTHLLT-G-YIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (269)
Q Consensus 87 ~~~i~~-G-~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~ 164 (269)
+.+.+ | .++.....+.+..+.+.+++. + + +|++..+. ......+.+++ +++++|++++|++|+..++
T Consensus 129 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~--~~~~~~~~----~~~~~~~~~~~-~l~~~dil~~n~~E~~~l~ 197 (301)
T PF00294_consen 129 -DILHLSGVSLPEGIPEDLLEALAKAAKKN--G-P--FDPVFRDP----SWDDLREDLKE-LLPYADILKPNEEEAEALT 197 (301)
T ss_dssp -SEEEEESGHCSTTSHHHHHHHHHHHHHHT--T-E--EEEEEEGG----GSHHHHHHHHH-HHHTSSEEEEEHHHHHHHH
T ss_pred -cceeecccccccccccceeeecccccccc--c-c--cccccccc----cccccchhhhh-hccccchhccccccccccc
Confidence 43333 4 344445556666666666664 4 2 44444322 11113445555 7799999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEc-cccC-CCCCCchHHHHHHHHHh
Q 024300 165 GFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVI-PKIP-AYFTGTGDLMTALLLGW 242 (269)
Q Consensus 165 g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~dt~GaGDaf~a~~~~~ 242 (269)
+....+.+++.+++++++..|++.+++|.| .+|++++.. ++.+++++ +..+ +|++||||+|.|+|+++
T Consensus 198 ~~~~~~~~~~~~~~~~l~~~g~~~vivt~G-~~G~~~~~~---------~~~~~~~~~~~~~vvdttGAGD~f~A~~i~~ 267 (301)
T PF00294_consen 198 GSKIDDPEDALAALRELQARGVKIVIVTLG-EDGALYYTN---------DESYHVPPVPPVNVVDTTGAGDAFAAGFIYG 267 (301)
T ss_dssp TCSTSSHHHHHHHHHHHHHTTSSEEEEEEG-GGEEEEEET---------TEEEEEEEESSSSSSSCTTHHHHHHHHHHHH
T ss_pred cccccchhhhhccccccchhhhhhhhcccc-ccCcccccc---------cccccccccccccccceeccchhhhHHHHHH
Confidence 998777888999999998899999999998 789998863 24556665 4555 69999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 243 SNKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 243 l~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
+.+ |+++++|+++|+.+++..+++.
T Consensus 268 l~~-~~~~~~a~~~a~~~aa~~v~~~ 292 (301)
T PF00294_consen 268 LLS-GMSLEEALKFANAAAALKVQQP 292 (301)
T ss_dssp HHT-THHHHHHHHHHHHHHHHHHTSS
T ss_pred HHc-CCCHHHHHHHHHHHHHHHhCCC
Confidence 998 9999999999999999998764
No 60
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.85 E-value=3.3e-20 Score=163.35 Aligned_cols=216 Identities=12% Similarity=0.022 Sum_probs=138.4
Q ss_pred ccCcccccc---chHHHHhcCCceeeeceEEeecCCCCCCc----ce-----------eecCHHHHHHHHHHHHhCCCcc
Q 024300 25 VQGYVGNKS---AVFPLQLLGYDVDPIHSVQFSNHTGYPTF----KG-----------QVLNGQQLCDLIEGLEANNLLY 86 (269)
Q Consensus 25 ~~g~~G~~a---~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~----~~-----------~~~~~~~~~~~~~~~~~~~~~~ 86 (269)
..|.+|.|. ..+.|++.||++++ .... ...|+...+ .+ ..++.++++ ...+..
T Consensus 50 ~~~~vG~D~G~~l~~~L~~~GVd~~~-~~~~-~~~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~-------~~~~~~ 120 (328)
T cd01943 50 WIVDKGSDFPKSVEDELESWGTGMVF-RRDP-GRLTTRGLNIYDGNDRRFFKYLTPKKRIDVSDDLN-------STPLIR 120 (328)
T ss_pred eEEecCCCCCHHHHHHHHhcCCceEE-EeCC-CCcchhhhhhcCCCCcceeeecCcccccccccccc-------cccccC
Confidence 356666543 56689999999887 3322 123432211 00 012222222 111223
Q ss_pred ccEEEEcccCChhhHHHHHHHHHHHHh------cCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHH
Q 024300 87 YTHLLTGYIGSVSFLNTILQVVEKLRS------INPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA 160 (269)
Q Consensus 87 ~~~i~~G~l~~~~~~~~i~~~l~~~k~------~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~ 160 (269)
++.+.++..+. ...+...++++.+++ + +.++++||.+... .....+.+.+ +++++|+++||++|+
T Consensus 121 a~~~hl~~~~~-~~~~~~~~~~~~a~~~~~d~~~--g~~~~~d~~~~~~-----~~~~~~~l~~-~l~~~dil~~n~~Ea 191 (328)
T cd01943 121 SSCIHLICSPE-RCASIVDDIINLFKLLKGNSPT--RPKIVWEPLPDSC-----DPENLEDLLQ-ALPRVDVFSPNLEEA 191 (328)
T ss_pred CCeEEEECCHH-HHHHHHHHHHHHHHhhccccCC--ccEEEEecCCccc-----ChhhHHHHHH-HhccCCEECCCHHHH
Confidence 45555533221 123667778888887 5 7889999864311 1112234555 899999999999999
Q ss_pred HHhhCCCCCCHHHHHH-H-------HHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEcccc---C-CCC
Q 024300 161 EQLTGFRIGSEADGRE-A-------CKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKI---P-AYF 228 (269)
Q Consensus 161 ~~l~g~~~~~~~~~~~-a-------~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~dt 228 (269)
..|+|....+...... . +..+...+.+.|+||.| .+|++++... . ++.++++++.+ + +||
T Consensus 192 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vvvt~G-~~Ga~~~~~~-~------~~~~~~p~~~v~~~~vvDt 263 (328)
T cd01943 192 ARLLGLPTSEPSSDEEKEAVLQALLFSGILQDPGGGVVLRCG-KLGCYVGSAD-S------GPELWLPAYHTKSTKVVDP 263 (328)
T ss_pred HHHhCCCCCCccchhhhhhhHHHHHHHhhhccCCCEEEEEeC-CCCCEEEecC-C------CceEecCCccCCCCcccCC
Confidence 9999975432211111 1 11224568899999998 7999987531 0 24556666655 5 699
Q ss_pred CCchHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhc
Q 024300 229 TGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 229 ~GaGDaf~a~~~~~l~~~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
+||||+|+|+|++++.+ |+++++|+++|++++..++++
T Consensus 264 tGAGDaF~agfl~~l~~-g~~~~~al~~a~a~Aa~~v~~ 301 (328)
T cd01943 264 TGGGNSFLGGFAAGLAL-TKSIDEACIYGSVAASFAIEQ 301 (328)
T ss_pred CCchHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHcc
Confidence 99999999999999998 999999999999999988875
No 61
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=99.85 E-value=3.2e-20 Score=165.62 Aligned_cols=212 Identities=18% Similarity=0.119 Sum_probs=141.6
Q ss_pred cccCcccccc----chHHHHhcCCceeeeceEEeecCCCC----------CCcc---e--eecCHHHHHHHHHHHHhCCC
Q 024300 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGY----------PTFK---G--QVLNGQQLCDLIEGLEANNL 84 (269)
Q Consensus 24 ~~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g~----------~~~~---~--~~~~~~~~~~~~~~~~~~~~ 84 (269)
...|.+|.|. ..+.|++.||++..+.... .+|+. ..+. + ..++.+++. .+.+++
T Consensus 105 ~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~--~~Tg~~~v~v~~dgert~~~~lg~~~~l~~~~~~--~~~~~~--- 177 (367)
T PLN02379 105 GIIGACGDDEQGKLFVSNMGFSGVDLSRLRAKK--GPTAQCVCLVDALGNRTMRPCLSSAVKLQADELT--KEDFKG--- 177 (367)
T ss_pred EEEEEeCCChhHHHHHHHHHHcCCCccCcccCC--CCCceEEEEECCCCCccccCCccccccCChhHCC--HHHHhc---
Confidence 3678888765 5667899999977764321 12221 1110 0 112222222 123443
Q ss_pred ccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhcc--CCCcEEcCCHHHHHH
Q 024300 85 LYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVV--PVASMLTPNQFEAEQ 162 (269)
Q Consensus 85 ~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll--~~~dii~pN~~E~~~ 162 (269)
++.+.+.+.. ...+.+.++++.+|++ +++|++|+.... ..+...+.+.+ ++ .++|++++|++|+..
T Consensus 178 --~~~v~v~~~~--~~~~~~~~~~~~A~~~--g~~v~lD~s~~~-----~v~~~r~~l~~-ll~~~~vDilf~Ne~Ea~~ 245 (367)
T PLN02379 178 --SKWLVLRYGF--YNLEVIEAAIRLAKQE--GLSVSLDLASFE-----MVRNFRSPLLQ-LLESGKIDLCFANEDEARE 245 (367)
T ss_pred --CCEEEEEccc--CCHHHHHHHHHHHHHc--CCEEEEeccchh-----hhhhhhHHHHH-HhhcCCccEEEcCHHHHHH
Confidence 4445555321 2256778888999988 999999985421 11122233333 55 489999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccc-cC-CCCCCchHHHHHHHH
Q 024300 163 LTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPK-IP-AYFTGTGDLMTALLL 240 (269)
Q Consensus 163 l~g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~dt~GaGDaf~a~~~ 240 (269)
+++.... ++.+++.+. .+.+++.|++|.| .+|++++.+ ++.+++++++ .+ +||+||||+|+|+|+
T Consensus 246 l~~~~~~--~~~~~~~~~-l~~~~~~vvvT~G-~~Ga~~~~~---------~~~~~v~a~~~~~vVDTtGAGDaFaagfl 312 (367)
T PLN02379 246 LLRGEQE--SDPEAALEF-LAKYCNWAVVTLG-SKGCIARHG---------KEVVRVPAIGETNAVDATGAGDLFASGFL 312 (367)
T ss_pred HhcCCCC--CCHHHHHHH-HHhcCCEEEEEEC-CCCeEEEEC---------CEEEEecCCCCCCcccCCChhHHHHHHHH
Confidence 9874321 233444443 4457899999998 799998754 2566677665 34 699999999999999
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 241 GWSNKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 241 ~~l~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
+++.+ |+++++|+++|+.++..++++.
T Consensus 313 ~gl~~-G~~l~~a~~~g~~aAa~vi~~~ 339 (367)
T PLN02379 313 YGLIK-GLSLEECCKVGACSGGSVVRAL 339 (367)
T ss_pred HHHHC-CCCHHHHHHHHHHHHHHHHhcc
Confidence 99998 9999999999999999998863
No 62
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.85 E-value=1.1e-19 Score=167.86 Aligned_cols=207 Identities=20% Similarity=0.171 Sum_probs=139.1
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEEeecCCCCCC-------------c--ceeecCHHHHHHH-HHHHHhCCC
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPT-------------F--KGQVLNGQQLCDL-IEGLEANNL 84 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g~~~-------------~--~~~~~~~~~~~~~-~~~~~~~~~ 84 (269)
..|.+|.|. ..+.|++.||++..+.... ..|+... + ....++.+.+... .+.+.+
T Consensus 69 ~i~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~--~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--- 143 (473)
T PRK11316 69 LVGLTGIDEAARALSKLLAAVGVKCDFVSVPT--HPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLLERIEQALPS--- 143 (473)
T ss_pred EEEEEcCCHHHHHHHHHHHHcCCceeEEEcCC--CCCCeeEEEEeCCceEEecccccCCCchhHHHHHHHHHHHhcc---
Confidence 466777654 5667899999987764321 1222100 0 0011122332222 222443
Q ss_pred ccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhh
Q 024300 85 LYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (269)
Q Consensus 85 ~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~ 164 (269)
++.+.++..+. ...+.+..+++.++++ ++++++||+... + ..++++|+++||..|++.++
T Consensus 144 --~~~v~is~~~~-~~~~~~~~~~~~~k~~--g~~vv~Dp~~~~----~-----------~~~~~~dil~pN~~Ea~~l~ 203 (473)
T PRK11316 144 --IGALVLSDYAK-GALASVQAMIQLARKA--GVPVLIDPKGTD----F-----------ERYRGATLLTPNLSEFEAVV 203 (473)
T ss_pred --CCEEEEecCCc-cchhHHHHHHHHHHhc--CCeEEEeCCCCC----c-----------cccCCCeEECcCHHHHHHHh
Confidence 45444432221 1235577788888887 899999995431 0 14678999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHH-hcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHh
Q 024300 165 GFRIGSEADGREACKILH-AAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGW 242 (269)
Q Consensus 165 g~~~~~~~~~~~a~~~l~-~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~ 242 (269)
|.. .+.++..+.++.+. +.|++.|+||+| .+|++++..+ ...++++.+.++ +||+||||+|+|+|+++
T Consensus 204 g~~-~~~~~~~~~~~~l~~~~g~~~vvVT~G-~~G~~~~~~~--------~~~~~~~~~~v~vvDttGAGDaF~aa~~~~ 273 (473)
T PRK11316 204 GKC-KDEAELVEKGMKLIADYDLSALLVTRS-EQGMTLLQPG--------KAPLHLPTQAREVYDVTGAGDTVISVLAAA 273 (473)
T ss_pred CCC-CCHHHHHHHHHHHHHhcCCCEEEEEec-CCCcEEEecC--------CceEEecCcCCCCCCCCCCcHHHHHHHHHH
Confidence 852 34455566666654 679999999998 6898777532 124566766666 69999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHHHhhc
Q 024300 243 SNKYRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 243 l~~~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
|++ |+++++|+++|++++...+++
T Consensus 274 l~~-g~~~~~al~~A~a~Aa~~v~~ 297 (473)
T PRK11316 274 LAA-GNSLEEACALANAAAGVVVGK 297 (473)
T ss_pred HHc-CCCHHHHHHHHHHHHHhhccc
Confidence 998 999999999999998877654
No 63
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.83 E-value=2.3e-19 Score=154.42 Aligned_cols=209 Identities=19% Similarity=0.181 Sum_probs=140.0
Q ss_pred ccccCcccccc---chHHHHhcCCceeeeceEEeecCC----CCCC--cce--eecCH-HHHHHH----HHHHHhCCCcc
Q 024300 23 HTVQGYVGNKS---AVFPLQLLGYDVDPIHSVQFSNHT----GYPT--FKG--QVLNG-QQLCDL----IEGLEANNLLY 86 (269)
Q Consensus 23 ~~~~g~~G~~a---~~~~l~~~Gv~~~~i~~~~~~~~~----g~~~--~~~--~~~~~-~~~~~~----~~~~~~~~~~~ 86 (269)
....|.+|.|. .++.|+++|+++..+.... ..+| +... +.. ...+. .....+ .+.+. .
T Consensus 41 v~~i~~vG~D~g~~~~~~l~~~gi~~~~v~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 114 (277)
T cd01946 41 VRLVGVVGEDFPEEDYKLLNSHNIVTLGLLSKE-DGKTFHWAGRYHYDLNEADTLDTDLNVFADFDPQLPEHYK-----D 114 (277)
T ss_pred ceeEEeccCcChHHHHHHHHhccCcceeEEEec-CCCeEEEeeEehhhcccccchhhhhhHHhhcCCCChHHhh-----c
Confidence 34677777654 4667899999998886532 1112 1000 000 00000 001111 12232 2
Q ss_pred ccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCC
Q 024300 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (269)
Q Consensus 87 ~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~ 166 (269)
++++.++.++. +...++++.+++ ..++++||... | .....+.+++ +++++|+++||+.|+..|+|.
T Consensus 115 ~~~v~~~~~~~----~~~~~~~~~~~~---~~~v~~D~~~~-----~-~~~~~~~~~~-~l~~~d~~~~n~~E~~~l~g~ 180 (277)
T cd01946 115 SEFVFLGNIAP----ELQREVLEQVKD---PKLVVMDTMNF-----W-ISIKPEKLKK-VLAKVDVVIINDGEARQLTGA 180 (277)
T ss_pred CCEEEECCCCH----HHHHHHHHHHHh---CCEEEEccHHH-----h-hhhhHHHHHH-HhccCCEEeCCHHHHHHHhCC
Confidence 56677766542 345566777765 36899998321 1 1122344555 889999999999999999985
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC--CCCCCchHHHHHHHHHhhc
Q 024300 167 RIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP--AYFTGTGDLMTALLLGWSN 244 (269)
Q Consensus 167 ~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dt~GaGDaf~a~~~~~l~ 244 (269)
++..++++.|.++|++.|++|.| .+|++++.+ ++.++.+.++++ +||+||||+|+|+|+++|.
T Consensus 181 -----~~~~~~~~~l~~~g~~~vvvt~G-~~G~~~~~~---------~~~~~~~~~~~~~~vDttGAGDaF~Agfl~~l~ 245 (277)
T cd01946 181 -----ANLVKAARLILAMGPKALIIKRG-EYGALLFTD---------DGYFAAPAYPLESVFDPTGAGDTFAGGFIGYLA 245 (277)
T ss_pred -----chHHHHHHHHHHcCCCEEEEecC-CCcEEEEEC---------CceEEcCCcccCccCCCCCchHHHHHHHHHHHH
Confidence 46777888888999999999998 689887653 245666666654 5999999999999999999
Q ss_pred cCC-----CCHHHHHHHHHHHHHHHhhc
Q 024300 245 KYR-----DNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 245 ~~g-----~~~~~a~~~A~~~~~~~l~~ 267 (269)
+ | .++++|+++|+++++..+++
T Consensus 246 ~-~~~~~~~~~~~a~~~a~~~aa~~~~~ 272 (277)
T cd01946 246 S-QKDTSEANMRRAIIYGSAMASFCVED 272 (277)
T ss_pred h-CCCcchhhHHHHHHHhHHHHhhhhhh
Confidence 7 7 46899999999999887765
No 64
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.83 E-value=2.4e-19 Score=154.68 Aligned_cols=202 Identities=19% Similarity=0.125 Sum_probs=139.2
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEEeecCCCCC---------Cc---c--eeecCHHHHHHHHHHHHhCCCcc
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYP---------TF---K--GQVLNGQQLCDLIEGLEANNLLY 86 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g~~---------~~---~--~~~~~~~~~~~~~~~~~~~~~~~ 86 (269)
..|.+|.|. .++.|++.||++.++.... ...++.. .. . ...+..++++.. .++ .
T Consensus 55 ~~~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~ 126 (284)
T cd01945 55 LIGVVGDDAIGRLILAELAAEGVDTSFIVVAP-GARSPISSITDITGDRATISITAIDTQAAPDSLPDA--ILG-----G 126 (284)
T ss_pred EEEEecCchHHHHHHHHHHHcCCCccceeecC-CCCCccEEEEccCCCceEEEecCCCCCCCcccCCHH--HhC-----c
Confidence 567777664 5677899999998886432 0112211 00 0 011222233221 133 3
Q ss_pred ccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCC
Q 024300 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (269)
Q Consensus 87 ~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~ 166 (269)
++++.++... .+...++++.++++ ++++++|..+... .+ +.+ +++++|++++|++|++.+++.
T Consensus 127 ~~~v~i~~~~----~~~~~~~~~~~~~~--g~~v~~~~~~~~~------~~----~~~-~~~~~dil~~n~~e~~~l~~~ 189 (284)
T cd01945 127 ADAVLVDGRQ----PEAALHLAQEARAR--GIPIPLDLDGGGL------RV----LEE-LLPLADHAICSENFLRPNTGS 189 (284)
T ss_pred CCEEEEcCCC----HHHHHHHHHHHHHc--CCCeeEeccCCcc------cc----hHH-HhccCCEEEeChhHHhhhcCC
Confidence 5656554432 24566788888887 7877777644321 11 233 788999999999999999886
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhcc
Q 024300 167 RIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNK 245 (269)
Q Consensus 167 ~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~~ 245 (269)
. +. ++++.+.+.+++.|++|.| .+|++++... ++.++++++.++ +||+||||+|.|+|++++++
T Consensus 190 ~-----~~-~~~~~l~~~~~~~vivt~G-~~G~~~~~~~--------~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~l~~ 254 (284)
T cd01945 190 A-----DD-EALELLASLGIPFVAVTLG-EAGCLWLERD--------GELFHVPAFPVEVVDTTGAGDVFHGAFAHALAE 254 (284)
T ss_pred C-----HH-HHHHHHHhcCCcEEEEEEC-CCCeEEEcCC--------CCEEecCCCccccccCCCcHHHHHHHHHHHHHc
Confidence 3 11 5667777889999999998 6899887521 245667666666 69999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHhhc
Q 024300 246 YRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 246 ~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
|+++++|+++|++++...+++
T Consensus 255 -g~~~~~al~~a~~~Aa~~~~~ 275 (284)
T cd01945 255 -GMPLREALRFASAAAALKCRG 275 (284)
T ss_pred -CCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998875
No 65
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=6.8e-20 Score=156.35 Aligned_cols=241 Identities=15% Similarity=0.097 Sum_probs=158.7
Q ss_pred CCCCccccCCCCCCCcEEEEec----c-cccCcccccc----chHHHHhcCCceeeeceEEeecCCCCCCc---------
Q 024300 1 MAPPILSLALPSETGRVLSIQS----H-TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPTF--------- 62 (269)
Q Consensus 1 ~~~~~~~~~~~~~~~~vl~i~g----~-~~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~--------- 62 (269)
+.||.+..++++...++-.... + ..+|.+|.|. .+..|+..||+++++.... ..+|+++.+
T Consensus 36 ~~~~~f~~~~GG~~aN~AvaaarLG~~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~-~~~T~~a~i~v~~dG~~~ 114 (330)
T KOG2855|consen 36 WEPPGFKTAPGGKGANQAVAAARLGGRVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDE-NARTACATITVSKDGENR 114 (330)
T ss_pred ccCCcceecCCCcchhhhhHHHhcCcceeeeecccchhhHHHHHHHHhhCCcccccceecC-CCceEEEEEEEccCCceE
Confidence 4688888999999888766544 2 5899999888 6778999999999997543 123443221
Q ss_pred ----cee--ecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCcc-CC
Q 024300 63 ----KGQ--VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLY-VP 135 (269)
Q Consensus 63 ----~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~-~~ 135 (269)
.+. ...++..+.-.+.++++.++++... .+.+..........++.+++- +.-+.+||+.+.. +| ..
T Consensus 115 ~~~v~gan~~~~~~~se~~~~~i~~ak~~~~q~e---i~~~~~~~s~~~~~~~~~~~~--g~~i~~~pn~~l~--l~~~~ 187 (330)
T KOG2855|consen 115 IIFVRGANADMLPEDSELNLEVIKEAKVFHCQSE---ILIEEPMRSLHIAAVKVAKNA--GPAIFYDPNLRLP--LWDSL 187 (330)
T ss_pred EEEEecCchhcCcccccccHHHHhhccEEEEeee---cCCcchhHHHHHhhhhhhhcc--cccccCCCCcccc--ccccc
Confidence 011 1222333344455666555433211 112222222222225566543 6566779988744 33 11
Q ss_pred hhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCc
Q 024300 136 SELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPE 215 (269)
Q Consensus 136 ~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~ 215 (269)
.+....+. .++..+|++...+.|++.+.|.. .+++ . .|...+.+.|+||.| ..|+.|+.... +.
T Consensus 188 ~~ne~e~~-~i~~~adv~~~s~~e~~fl~~~~---~~~~---~-~L~~~~~k~viVTlG-~kG~~y~tk~~-------~~ 251 (330)
T KOG2855|consen 188 EENESEIA-SIWNMADVIKVSSQELAFLTGIE---DDKI---L-KLWHMKLKLVIVTLG-EKGCRYYTKDF-------KG 251 (330)
T ss_pred cccHHHHH-HHhhhhhcccccHHHHHHhccCc---cchH---H-HHhccCCCEEEEEeC-CCceEEEecCC-------CC
Confidence 12222233 37889999999999999999872 1222 3 666666799999999 79999886531 12
Q ss_pred eEEEEccccC-CCCCCchHHHHHHHHHhhccCC--CC---HHHHHHHHHHHHHHHhhc
Q 024300 216 QFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYR--DN---LDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 216 ~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~~~g--~~---~~~a~~~A~~~~~~~l~~ 267 (269)
.+.+...++ +|||||||+|.|+|+..|++ | .+ +++++++|+++..-.+++
T Consensus 252 -~~v~~~~V~~VDtTGAGDsFvgal~~~L~~-~~~~~~~~L~~~l~~A~a~~ai~v~~ 307 (330)
T KOG2855|consen 252 -SHVPAFKVKAVDTTGAGDSFVGALAVQLVR-GSLLPELSLEEALRFANACGAITVQR 307 (330)
T ss_pred -CCCCCcccccccCCCchHHHHHHHHHHHhh-ccccchHHHHHHHHHHHHhhhHHhhc
Confidence 356666677 69999999999999999998 8 66 899999999998877664
No 66
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.82 E-value=4.2e-19 Score=152.78 Aligned_cols=197 Identities=18% Similarity=0.167 Sum_probs=130.6
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEEeecCCCC----------CCc---ce--eecCHHHHHHHHHHHHhCCCc
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGY----------PTF---KG--QVLNGQQLCDLIEGLEANNLL 85 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g~----------~~~---~~--~~~~~~~~~~~~~~~~~~~~~ 85 (269)
..|.+|.|. +.+.|+..||++..+.... ..+|+. ..+ .+ ..++.++ ..+.+.+
T Consensus 55 ~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---- 126 (279)
T cd01942 55 LVAAVGEDFHGRLYLEELREEGVDTSHVRVVD-EDSTGVAFILTDGDDNQIAYFYPGAMDELEPND---EADPDGL---- 126 (279)
T ss_pred EEEEecCCcchHHHHHHHHHcCCCccceEEcC-CCCcceEEEEEcCCCCEEEEecCCcccccccCC---chhhhcc----
Confidence 567777665 4667899999998884321 011221 111 01 0111111 1122332
Q ss_pred cccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHH---HH
Q 024300 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA---EQ 162 (269)
Q Consensus 86 ~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~---~~ 162 (269)
.+.+.+.... .+.++++.++++ ++++++||+.+.. .| .. +.+++ +++++|++++|++|+ ..
T Consensus 127 -~~~~~~~~~~------~~~~~~~~~~~~--g~~v~~D~~~~~~--~~-~~---~~~~~-~l~~~dil~~n~~E~~~l~~ 190 (279)
T cd01942 127 -ADIVHLSSGP------GLIELARELAAG--GITVSFDPGQELP--RL-SG---EELEE-ILERADILFVNDYEAELLKE 190 (279)
T ss_pred -cCEEEeCCch------HHHHHHHHHHHc--CCeEEEcchhhhh--hc-cH---HHHHH-HHhhCCEEecCHHHHHHHHh
Confidence 4445444321 355677788877 8999999976532 11 11 23444 788999999999999 45
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEcc-ccC-CCCCCchHHHHHHHH
Q 024300 163 LTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIP-KIP-AYFTGTGDLMTALLL 240 (269)
Q Consensus 163 l~g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~dt~GaGDaf~a~~~ 240 (269)
+.+.. +.. ...+++.|++|.| .+|+++... ++.+++++. .++ +||+||||+|+|+|+
T Consensus 191 ~~~~~-----~~~------~~~~~~~vvvt~G-~~G~~~~~~---------~~~~~~~~~~~~~vvDttGAGDaf~a~~i 249 (279)
T cd01942 191 RTGLS-----EAE------LASGVRVVVVTLG-PKGAIVFED---------GEEVEVPAVPAVKVVDTTGAGDAFRAGFL 249 (279)
T ss_pred hcCCC-----hHH------HhcCCCEEEEEEC-CCceEEEEC---------CceEEccCcCcCCCcCCCCchHHHHHHHH
Confidence 55542 111 1268899999998 799988753 245666654 555 699999999999999
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHHhhc
Q 024300 241 GWSNKYRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 241 ~~l~~~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
+++.+ |+++++|+++|++++...+++
T Consensus 250 ~~l~~-g~~l~~al~~a~~~Aa~~~~~ 275 (279)
T cd01942 250 YGLLR-GYDLEESLRLGNLAASLKVER 275 (279)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHHHHcc
Confidence 99998 999999999999999998876
No 67
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.80 E-value=4.1e-18 Score=145.37 Aligned_cols=194 Identities=17% Similarity=0.159 Sum_probs=133.0
Q ss_pred cccCcccccc----chHHHHhcCCceeeeceEEeecCCCCCC---------c---c-e----eecCHHHHHHHHHHHHhC
Q 024300 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPT---------F---K-G----QVLNGQQLCDLIEGLEAN 82 (269)
Q Consensus 24 ~~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g~~~---------~---~-~----~~~~~~~~~~~~~~~~~~ 82 (269)
...|.+|.|. +++.|++.||+++++.... ..|+... + . + ..+++.+ ++.+.+
T Consensus 41 ~~is~vG~D~~g~~i~~~l~~~gI~~~~~~~~~--~~t~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~----~~~l~~- 113 (260)
T PRK09813 41 GCITWVGDDDYGTKLKQDLARMGVDISHVHTKH--GVTAQTQVELHDNDRVFGDYTEGVMADFALSEED----YAWLAQ- 113 (260)
T ss_pred eEEEEecCcHHHHHHHHHHHHcCCcchheeeec--CCCceEEEEEeCCcEEeeccCCCcccccccCHHH----HHHHHh-
Confidence 3677778764 5667899999988886532 2222110 0 0 0 1122222 223443
Q ss_pred CCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHH
Q 024300 83 NLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQ 162 (269)
Q Consensus 83 ~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~ 162 (269)
.+.+.++... ...++++.++++ ++++++||+.+. ..+ .+.+ +++++|++++|..+
T Consensus 114 ----~~~v~~~~~~------~~~~~~~~~~~~--~~~v~~D~~~~~------~~~---~~~~-~~~~~d~~~~~~~~--- 168 (260)
T PRK09813 114 ----YDIVHAAIWG------HAEDAFPQLHAA--GKLTAFDFSDKW------DSP---LWQT-LVPHLDYAFASAPQ--- 168 (260)
T ss_pred ----CCEEEEeccc------hHHHHHHHHHHc--CCeEEEEcCCCc------cHH---HHHH-hCCceeEEEecCCc---
Confidence 3445544321 123566777777 899999996542 111 2333 88999999887543
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHH
Q 024300 163 LTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLG 241 (269)
Q Consensus 163 l~g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~ 241 (269)
...+++++++.+.+.|++.|++|.| .+|+++... ++.++.++.+++ +||+||||+|.|+|++
T Consensus 169 -------~~~~~~~~~~~~~~~g~~~viit~G-~~Ga~~~~~---------~~~~~~~~~~~~~vDttGAGDaF~ag~i~ 231 (260)
T PRK09813 169 -------EDEFLRLKMKAIVARGAGVVIVTLG-ENGSIAWDG---------AQFWRQAPEPVTVVDTMGAGDSFIAGFLC 231 (260)
T ss_pred -------chHHHHHHHHHHHHcCCCEEEEEEC-CCceEEEEC---------CEEEecCCcccCCCCCCCchHHHHHHHHH
Confidence 1245677888888889999999998 789988754 245566666666 6999999999999999
Q ss_pred hhccCCCCHHHHHHHHHHHHHHHhhc
Q 024300 242 WSNKYRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 242 ~l~~~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
++.+ |+++++|+++|++++...+++
T Consensus 232 ~~~~-g~~~~~al~~a~~~aa~~~~~ 256 (260)
T PRK09813 232 GWLA-GMTLPQAMAQGTACAAKTIQY 256 (260)
T ss_pred HHHc-CCCHHHHHHHHHHHHHHHHhc
Confidence 9998 999999999999999988875
No 68
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.79 E-value=3.5e-18 Score=148.00 Aligned_cols=205 Identities=16% Similarity=0.090 Sum_probs=129.7
Q ss_pred ccCcccccc----chHHHHhcCCceeeeceEE---------eecCCCCCCc---c--eeecCHHHHHHHHHHHHhCCCcc
Q 024300 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQ---------FSNHTGYPTF---K--GQVLNGQQLCDLIEGLEANNLLY 86 (269)
Q Consensus 25 ~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~---------~~~~~g~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~ 86 (269)
..|.+|.+. .+..|++.||++.++.... .....|-..+ . ...++.++++.. .+++
T Consensus 55 ~~~~vG~D~~g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~----- 127 (290)
T cd01939 55 FLGVLSRGPVFESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVNDNNLPEVTYDDFSKI--DLTQ----- 127 (290)
T ss_pred EEEeecCCHHHHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHhhh--hhcc-----
Confidence 567777664 6778999999998874321 0011111111 1 123455555543 1233
Q ss_pred ccEEEE-cccCChhhHHHHHHHHHHHHhcCC-----CceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHH
Q 024300 87 YTHLLT-GYIGSVSFLNTILQVVEKLRSINP-----NLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA 160 (269)
Q Consensus 87 ~~~i~~-G~l~~~~~~~~i~~~l~~~k~~~~-----~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~ 160 (269)
++.+.+ |..+ +...++++.++++.. .+++++|+.... ++ +.+ +++++|++++|++|+
T Consensus 128 ~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~-------~~----~~~-~l~~~di~~~n~~~~ 190 (290)
T cd01939 128 YGWIHFEGRNP-----DETLRMMQHIEEHNNRRPEIRITISVEVEKPR-------EE----LLE-LAAYCDVVFVSKDWA 190 (290)
T ss_pred CCEEEEeccCH-----HHHHHHHHHHHHhcCcCCCcceEEEEEeccCc-------hh----hhh-HHhhCCEEEEEhHHH
Confidence 444444 3332 234456666666410 168889985331 11 223 888999999999998
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccc-cC-CCCCCchHHHHHH
Q 024300 161 EQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPK-IP-AYFTGTGDLMTAL 238 (269)
Q Consensus 161 ~~l~g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~dt~GaGDaf~a~ 238 (269)
+.+ +.. +.++... ...+...+++.|++|.| .+|++++... ++.+++++++ .+ +||+||||+|+|+
T Consensus 191 ~~~-~~~--~~~~~~~-~~~~~~~~~~~vvvt~G-~~G~~~~~~~--------~~~~~~~~~~~~~vvDt~GAGDsf~ag 257 (290)
T cd01939 191 QSR-GYK--SPEECLR-GEGPRAKKAALLVCTWG-DQGAGALGPD--------GEYVHSPAHKPIRVVDTLGAGDTFNAA 257 (290)
T ss_pred Hhc-CcC--CHHHHHH-hhhhhccCCcEEEEEcc-cCCeEEEcCC--------CCEEEecCCCCCCcccCCCchHHHHHH
Confidence 865 542 2222221 12223457899999998 7999887531 2455666544 33 6999999999999
Q ss_pred HHHhhccCCCC-HHHHHHHHHHHHHHHhhc
Q 024300 239 LLGWSNKYRDN-LDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 239 ~~~~l~~~g~~-~~~a~~~A~~~~~~~l~~ 267 (269)
|++++.+ |++ +++|+++|+++++..+++
T Consensus 258 fl~~l~~-g~~~~~~a~~~a~a~aa~~i~~ 286 (290)
T cd01939 258 VIYALNK-GPDDLSEALDFGNRVASQKCTG 286 (290)
T ss_pred HHHHHHc-CCccHHHHHHHHHHHHHHHHhh
Confidence 9999998 995 999999999999998875
No 69
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.78 E-value=7.3e-18 Score=137.36 Aligned_cols=138 Identities=24% Similarity=0.263 Sum_probs=103.9
Q ss_pred ccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCC
Q 024300 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (269)
Q Consensus 87 ~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~ 166 (269)
.+++.++...+. .+.+.++++.+++. ++++++||+..... +..++ +.+ +++++|+++||..|++.|++.
T Consensus 58 ~~~v~i~~~~~~--~~~~~~~~~~~~~~--~~~v~~D~~~~~~~--~~~~~----~~~-~~~~~dvl~~n~~E~~~l~~~ 126 (196)
T cd00287 58 ADAVVISGLSPA--PEAVLDALEEARRR--GVPVVLDPGPRAVR--LDGEE----LEK-LLPGVDILTPNEEEAEALTGR 126 (196)
T ss_pred ccEEEEecccCc--HHHHHHHHHHHHHc--CCeEEEeCCccccc--cccch----HHH-HHhhCCEECCCHHHHHHHhCC
Confidence 345555554322 35677788888887 89999999876321 11111 333 788999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhc
Q 024300 167 RIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSN 244 (269)
Q Consensus 167 ~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~ 244 (269)
...+.++..++++.+.+.+++.|++|.| .+|++++... +..++++.++.+ +||+||||+|+|+|+++++
T Consensus 127 ~~~~~~~~~~~~~~l~~~g~~~vvvt~G-~~g~~~~~~~--------~~~~~~~~~~~~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 127 RDLEVKEAAEAAALLLSKGPKVVIVTLG-EKGAIVATRG--------GTEVHVPAFPVKVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred CCCChHHHHHHHHHHHhcCCCEEEEEEC-CCccEEEecC--------CceEEcCCccCCcccCCCchHHHHHHHHHHhC
Confidence 7666667778888999999999999998 6899887621 245566665555 6999999999999999874
No 70
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.78 E-value=1.4e-18 Score=148.59 Aligned_cols=128 Identities=15% Similarity=0.122 Sum_probs=100.5
Q ss_pred HHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 024300 105 LQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAA 184 (269)
Q Consensus 105 ~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~~~~~~a~~~l~~~ 184 (269)
.++++.++++ + .+++|+..+.. . +.+++ +++++|++++|++|+..+.+ ++.+.+.
T Consensus 134 ~~~~~~a~~~--~-~~~~d~~~~~~----~-----~~~~~-~~~~~d~~~~n~~e~~~l~~------------~~~~~~~ 188 (265)
T cd01947 134 KEAIRKCRET--K-LVILQVTPRVR----V-----DELNQ-ALIPLDILIGSRLDPGELVV------------AEKIAGP 188 (265)
T ss_pred HHHHHHHHHh--C-CeEeccCcccc----c-----hhHHH-HhhhCCEEEeCHHHHHHhhh------------HHHHHhc
Confidence 3556677765 4 67889865421 1 12334 78899999999999998864 3456677
Q ss_pred CCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024300 185 GPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQV 263 (269)
Q Consensus 185 g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~~~g~~~~~a~~~A~~~~~~ 263 (269)
+++.|++|.| .+|++++.+ ++.+++++++++ +|++||||+|.|+|++++.+ |+++++|+++|++++..
T Consensus 189 ~~~~viit~G-~~Ga~~~~~---------~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~-g~~~~~al~~a~~~Aa~ 257 (265)
T cd01947 189 FPRYLIVTEG-ELGAILYPG---------GRYNHVPAKKAKVPDSTGAGDSFAAGFIYGLLK-GWSIEEALELGAQCGAI 257 (265)
T ss_pred cCCEEEEEeC-CCCeEEEEC---------CeeEECCCCCCCCCCCCCchHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 8999999998 799998764 245666666666 69999999999999999998 99999999999999998
Q ss_pred HhhcC
Q 024300 264 LLLLM 268 (269)
Q Consensus 264 ~l~~~ 268 (269)
.+++.
T Consensus 258 ~v~~~ 262 (265)
T cd01947 258 CVSHF 262 (265)
T ss_pred HHhcc
Confidence 88753
No 71
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.76 E-value=1.3e-16 Score=134.39 Aligned_cols=156 Identities=22% Similarity=0.147 Sum_probs=112.6
Q ss_pred EEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccC--CCcEEcCCHHHHHHhhCCC
Q 024300 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVP--VASMLTPNQFEAEQLTGFR 167 (269)
Q Consensus 90 i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~--~~dii~pN~~E~~~l~g~~ 167 (269)
+..|++. +...+.+...++.++++ ++|+|+||+..... . ...+.+.+ ++. .+|+++||..|++.|+|.+
T Consensus 55 i~~G~l~-~~~~~~i~~~~~~~~~~--~~pvVlDp~~~~~~----~-~~~~~~~~-ll~~~~~~ilTPN~~Ea~~L~g~~ 125 (242)
T cd01170 55 INIGTLT-SEQIEAMLKAGKAANQL--GKPVVLDPVGVGAT----S-FRTEVAKE-LLAEGQPTVIRGNASEIAALAGLT 125 (242)
T ss_pred EeCCCCC-hHHHHHHHHHHHHHHhc--CCCEEEcccccCcc----h-hHHHHHHH-HHhcCCCeEEcCCHHHHHHHhCCC
Confidence 4555553 34567777777778877 89999999765321 1 11122233 444 5999999999999999976
Q ss_pred CCC---------HHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHH
Q 024300 168 IGS---------EADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTA 237 (269)
Q Consensus 168 ~~~---------~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a 237 (269)
..+ .++..+++++|.+.+...|++|++ .. +++++ ++.++++..... .+++|+||+|+|
T Consensus 126 ~~~~~~~~~~~~~~~~~~aa~~l~~~~~~~VllkG~--~d-~l~~~---------~~~~~~~~~~~~~~~v~GtGdtLa~ 193 (242)
T cd01170 126 GLGKGVDSSSSDEEDALELAKALARKYGAVVVVTGE--VD-YITDG---------ERVVVVKNGHPLLTKITGTGCLLGA 193 (242)
T ss_pred CCcCcccCCCcchHHHHHHHHHHHHHhCCEEEEECC--Cc-EEEEC---------CEEEEEeCCCccccCCCchHHHHHH
Confidence 532 567888999998777778999964 23 44432 245566543333 356899999999
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHhhc
Q 024300 238 LLLGWSNKYRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 238 ~~~~~l~~~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
++++.|++ |.++.+|+..|..+..+++++
T Consensus 194 aiAa~LA~-g~~~~~A~~~A~~~~~~a~~~ 222 (242)
T cd01170 194 VIAAFLAV-GDDPLEAAVSAVLVYGIAGEL 222 (242)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999998888753
No 72
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=2.9e-17 Score=138.89 Aligned_cols=219 Identities=17% Similarity=0.165 Sum_probs=139.7
Q ss_pred cccCcccccc----chHHHHhcCCceeeeceEEeecCCCC---------CCcc---e--eecCHHHHHH--HHHHHHhCC
Q 024300 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGY---------PTFK---G--QVLNGQQLCD--LIEGLEANN 83 (269)
Q Consensus 24 ~~~g~~G~~a----~~~~l~~~Gv~~~~i~~~~~~~~~g~---------~~~~---~--~~~~~~~~~~--~~~~~~~~~ 83 (269)
..+|.+|.|- ..+.++..|+++.+.+... .+||. .++. + ..++.++++. .+..+++..
T Consensus 84 ~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d--~~TGtCavli~~~nRSL~anLgAAn~f~~dhl~~~~~~~lveka~ 161 (343)
T KOG2854|consen 84 VFFGSVGKDKFGELLKSKARAAGVNVHYQVKED--GPTGTCAVLITGDNRSLCANLGAANCFKVDHLDKEENWALVEKAK 161 (343)
T ss_pred EEEeeccCchHHHHHHHHHHhcCceEEEEeccC--CCCceEEEEEeCCCcchhhccchhhccCHHHhcchhhhhhhhhee
Confidence 3677888766 4556788999888775433 23431 1110 0 1233344322 334455555
Q ss_pred CccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHh
Q 024300 84 LLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQL 163 (269)
Q Consensus 84 ~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l 163 (269)
++++ .|+.-. ...+++..+.+++.+. +.+.+++... .++.+-..+.+.+ +++|+|+++.|++|++.+
T Consensus 162 v~yv----~Gfflt-v~p~ai~~v~qh~~e~--~r~~~lnlsa-----pfI~q~~~~~l~~-v~~y~DiifgNe~EA~af 228 (343)
T KOG2854|consen 162 VFYV----AGFFLT-VSPDAIRKVAQHAAEN--NRVFTLNLSA-----PFISQFFKDALDK-VLPYADIIFGNEDEAAAF 228 (343)
T ss_pred EEEE----EEEEEE-eChHHHHHHHHHHHHh--cchhheeccc-----hhHHHHHHHHHHh-hcCcceEEEcCHHHHHHH
Confidence 5443 333322 3356677788888887 5556655422 2344455566666 899999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHh------cCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC----CCCCCchH
Q 024300 164 TGFRIGSEADGREACKILHA------AGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP----AYFTGTGD 233 (269)
Q Consensus 164 ~g~~~~~~~~~~~a~~~l~~------~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~dt~GaGD 233 (269)
+...-....++++.+..+.. ..++.+++|.| .+..+.... +..+.++..+.+ +||+||||
T Consensus 229 ~~~~~~~t~dv~eia~~~~~~~k~~~~~~r~vvit~g-~~~~i~~~~---------~~v~~~~v~~~~~~~ivDtnGAGD 298 (343)
T KOG2854|consen 229 ARAHGWETKDVKEIALKLSALPKVNGTRPRTVVITQG-PDPVIVAED---------GKVTAYPVLPLPVEEIVDTNGAGD 298 (343)
T ss_pred HHhhCCcccchHHHhhHhhccccccccccceEEEccC-CCceEEecC---------CceEEeccccccceeeeeCCCchH
Confidence 75432111233333222222 24678999998 566666543 245555544332 59999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 234 LMTALLLGWSNKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 234 af~a~~~~~l~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
+|+|+|++.|.+ |++++++++.+..+++.+|+++
T Consensus 299 aFvgGFl~~l~q-g~~l~~cir~g~~aa~~vi~~~ 332 (343)
T KOG2854|consen 299 AFVGGFLSQLVQ-GKSLEECIRAGSYAASHVIRRV 332 (343)
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHhhheeecc
Confidence 999999999999 9999999999999999999874
No 73
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.75 E-value=2.8e-17 Score=139.67 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=96.8
Q ss_pred ceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCCeEEEEeeecC
Q 024300 118 LIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINID 197 (269)
Q Consensus 118 ~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~ 197 (269)
.+|++||+.... .+...+ ..+. .+++++|+++||+.|+..+ .+.+++++.+.++|++.|++|.| ..
T Consensus 129 ~~v~~D~~~~~~--~~~~~~--~~~~-~~l~~~di~~~n~~E~~~~--------~~~~~~~~~l~~~g~~~vvvt~g-~~ 194 (254)
T cd01937 129 AFISLDAQGFLR--RANQEK--LIKC-VILKLHDVLKLSRVEAEVI--------STPTELARLIKETGVKEIIVTDG-EE 194 (254)
T ss_pred hheeEcccccee--eccccc--hHHH-hhcccCcEEEEcHHHHhhc--------CCHHHHHHHHHHcCCCEEEEeeC-Cc
Confidence 689999975421 111111 1123 3899999999999999983 24556777888889999999998 68
Q ss_pred CcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhh
Q 024300 198 GNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQVLLL 266 (269)
Q Consensus 198 g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~~~g~~~~~a~~~A~~~~~~~l~ 266 (269)
|++++.. ++.++++.++++ +||+||||+|+|+|++++.+ |+++++|+++|++++...++
T Consensus 195 g~~~~~~---------~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~-g~~~~~a~~~a~~~aa~~i~ 254 (254)
T cd01937 195 GGYIFDG---------NGKYTIPASKKDVVDPTGAGDVFLAAFLYSRLS-GKDIKEAAEFAAAAAAKFIE 254 (254)
T ss_pred ceEEEEC---------CccEEccccCceeccCCCchHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhC
Confidence 9888754 245566666655 69999999999999999998 99999999999999987753
No 74
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=99.73 E-value=4.3e-16 Score=131.83 Aligned_cols=159 Identities=18% Similarity=0.130 Sum_probs=114.4
Q ss_pred ccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccC--CCcEEcCCHHHHHHhh
Q 024300 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVP--VASMLTPNQFEAEQLT 164 (269)
Q Consensus 87 ~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~--~~dii~pN~~E~~~l~ 164 (269)
+-+|++|++.+ +..+.+..+++.++++ ++|+|+||+...... ...+ ..++ +++ ++++|+||..|++.|+
T Consensus 52 al~ik~G~l~~-~~~~~i~~~~~~~~~~--~~pvVlDPV~~~~s~--~r~~---~~~~-Ll~~~~~~vITpN~~E~~~L~ 122 (249)
T TIGR00694 52 ALVINIGTLDK-ESIEAMIAAGKSANEL--GVPVVLDPVGVGATK--FRTE---TALE-LLSEGRFAAIRGNAGEIASLA 122 (249)
T ss_pred ceEEeCCCCCH-HHHHHHHHHHHHHHhc--CCCEEEcccccccch--hHHH---HHHH-HHhhcCCceeCCCHHHHHHHh
Confidence 44689999854 6678888888888887 889999999874211 1111 1122 555 5799999999999999
Q ss_pred CCCC--------CCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEc-cccCCCCCCchHHH
Q 024300 165 GFRI--------GSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVI-PKIPAYFTGTGDLM 235 (269)
Q Consensus 165 g~~~--------~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dt~GaGDaf 235 (269)
|... .+.++..++++.|.+++...|++|++ ..+++++ ++.+.+.. .+.....+|+||++
T Consensus 123 g~~~~~~gvd~~~~~~d~~~~a~~la~~~~~~VllkG~---~D~i~~~---------~~~~~~~~g~~~~~~~~GtGc~L 190 (249)
T TIGR00694 123 GETGLMKGVDSGEGAADAIRAAQQAAQKYGTVVVITGE---VDYVSDG---------TSVYTIHNGTELLGKITGSGCLL 190 (249)
T ss_pred CCCCCCCCcCCccchHHHHHHHHHHHHHhCCEEEEECC---CcEEEeC---------CEEEEECCCChHHhCCccchHHH
Confidence 8641 12557778888898776668999985 2355532 23443322 22223358999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHhhc
Q 024300 236 TALLLGWSNKYRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 236 ~a~~~~~l~~~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
++++++.+++ |.++.+|+..|..+...+++.
T Consensus 191 ssaIaa~LA~-g~~~~~A~~~A~~~~~~a~~~ 221 (249)
T TIGR00694 191 GSVVAAFCAV-EEDPLDAAISACLLYKIAGEL 221 (249)
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHH
Confidence 9999999998 999999999999888877653
No 75
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=1.7e-15 Score=131.06 Aligned_cols=131 Identities=20% Similarity=0.235 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHH-
Q 024300 104 ILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILH- 182 (269)
Q Consensus 104 i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~~~~~~a~~~l~- 182 (269)
+..+++.+|++ ++||.+||-..+ | .....+++||||..|++...|..... +++.+..++|.
T Consensus 160 ~q~~I~~ar~~--~~pVLvDPKg~D----f-----------~~Y~GAtLiTPN~~E~~~~vg~~~~e-~el~~~g~kL~~ 221 (467)
T COG2870 160 VQKMIDLAREA--GIPVLVDPKGKD----F-----------EKYRGATLITPNLKEFEEAVGKCKSE-EELEERGQKLKE 221 (467)
T ss_pred HHHHHHHHHHc--CCcEEECCCCcc----h-----------hhhCCCeecCCCHHHHHHHHcccccH-HHHHHHHHHHHH
Confidence 67888999998 999999994442 2 14678999999999999999976533 66677667776
Q ss_pred hcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccCC-CCCCchHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 024300 183 AAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIPA-YFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSL 261 (269)
Q Consensus 183 ~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dt~GaGDaf~a~~~~~l~~~g~~~~~a~~~A~~~~ 261 (269)
+.+...+++|++ +.|..++..+ +..++|+...++ |.|||||+..|.|+++|+. |.++++|+.+||.++
T Consensus 222 ~~~L~alLvTRs-E~GMtL~~~~---------~~~h~pt~AkEVyDVTGAGDTVIa~la~~laa-G~s~~eAc~lAN~Aa 290 (467)
T COG2870 222 ELDLSALLVTRS-EKGMTLFQEG---------KPLHFPARAKEVYDVTGAGDTVIAVLAAALAA-GASLEEACELANAAA 290 (467)
T ss_pred hhCcceEEEEec-cCCceeecCC---------cccccchhheeeeeccCCCchHHHHHHHHHHc-CCCHHHHHHHhhhhc
Confidence 567899999998 6898887642 346777665565 9999999999999999998 999999999999987
Q ss_pred HH
Q 024300 262 QV 263 (269)
Q Consensus 262 ~~ 263 (269)
--
T Consensus 291 gi 292 (467)
T COG2870 291 GI 292 (467)
T ss_pred ce
Confidence 53
No 76
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.66 E-value=1.6e-14 Score=123.21 Aligned_cols=157 Identities=18% Similarity=0.119 Sum_probs=110.5
Q ss_pred cEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCC
Q 024300 88 THLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR 167 (269)
Q Consensus 88 ~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~ 167 (269)
-+|.+|++. ....+.+..+++.++++ ++|+|+||+..... . ...+..+.+.+ .++.++|+||..|+..|+|.+
T Consensus 58 lvi~~G~l~-~~~~~~i~~~~~~a~~~--~~pvVlDpv~~~~~-~-~~~~~~~~ll~--~~~~~vItPN~~E~~~L~g~~ 130 (263)
T PRK09355 58 LVINIGTLT-EERIEAMLAAGKIANEA--GKPVVLDPVGVGAT-S-YRTEFALELLA--EVKPAVIRGNASEIAALAGEA 130 (263)
T ss_pred eEEeCCCCC-HHHHHHHHHHHHHHHhc--CCCEEECCcccCcc-h-hhHHHHHHHHH--hcCCcEecCCHHHHHHHhCCC
Confidence 356778774 45566677777778887 89999999876321 1 12233332222 137899999999999999864
Q ss_pred C--------CCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccc-cCCCCCCchHHHHHH
Q 024300 168 I--------GSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPK-IPAYFTGTGDLMTAL 238 (269)
Q Consensus 168 ~--------~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dt~GaGDaf~a~ 238 (269)
. .+.++..++++.|.+++...|++|++ ..+++++ ++.+.+.... ...+.+|+||+++|+
T Consensus 131 ~~~~~vd~~~~~~~~~~~a~~la~~~~~~VvvkG~---~d~I~~~---------~~~~~~~~g~~~~~~v~GtGc~L~~~ 198 (263)
T PRK09355 131 AETKGVDSTDGSADAVEIAKAAAKKYGTVVVVTGE---VDYITDG---------ERVVSVHNGHPLMTKVTGTGCLLSAV 198 (263)
T ss_pred cccCCcCCCCCHHHHHHHHHHHHHHhCCEEEEECC---CcEEEeC---------CEEEEEeCCCcccCCcccccHHHHHH
Confidence 2 12457788889998877778999985 2355432 2344454222 223569999999999
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHH
Q 024300 239 LLGWSNKYRDNLDIAAELAVSSLQVL 264 (269)
Q Consensus 239 ~~~~l~~~g~~~~~a~~~A~~~~~~~ 264 (269)
+++.+++ |.++.+|+..|..+...+
T Consensus 199 iaa~lA~-g~~~~~A~~~A~~~~~~a 223 (263)
T PRK09355 199 VAAFAAV-EKDYLEAAAAACAVYGIA 223 (263)
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 9999998 999999999998877665
No 77
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.66 E-value=2.2e-15 Score=132.60 Aligned_cols=134 Identities=19% Similarity=0.117 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHh-----cCCCceEEEccccc-cCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCHHHH
Q 024300 101 LNTILQVVEKLRS-----INPNLIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADG 174 (269)
Q Consensus 101 ~~~i~~~l~~~k~-----~~~~~~vv~Dp~~~-~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~~~~ 174 (269)
.+.+.++++.++. + +..++|||++. .. +|-.++ +.+.+ +++++|++++|++|+..+ +.++
T Consensus 134 ~e~~~~~~~~a~~v~~D~~--g~~~~~Dp~~~~~~--~~~~~~--~~~~~-~L~~iDil~~ne~Ea~~l------~~~~- 199 (335)
T PLN02630 134 PETLERMVEICDVVVVDIQ--ALIRVFDPVDGTVK--LVKLEE--TGFYD-MLPRIGFLKASSEEALFI------DVEE- 199 (335)
T ss_pred HHHHHHHHHHhhhheeccC--ceEEecCCcccccc--cchhhH--HHHHH-HHHhCCEEEecHHHHhhc------CHHH-
Confidence 4567777787776 5 78899999763 11 111011 12333 889999999999999876 1122
Q ss_pred HHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHHHHHhhccCCCCHHHH
Q 024300 175 REACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDNLDIA 253 (269)
Q Consensus 175 ~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~~~~~l~~~g~~~~~a 253 (269)
+ .+ ...|++|.| .+|++++.+ ++.+++++++++ +|||||||+|+|+|++++.+ |+++++|
T Consensus 200 --~----~~--~~~vvvt~G-~~G~~~~~~---------~~~~~~~~~~v~~vDttGAGDaF~agfi~~l~~-g~~~~~a 260 (335)
T PLN02630 200 --V----RQ--KCCVIVTNG-KKGCRIYWK---------DGEMRVPPFPAIQVDPTGAGDSFLGGFVAGLVQ-GLAVPDA 260 (335)
T ss_pred --H----cc--CCEEEEEEC-CCceEEEEC---------CeeEEeCCCCCCCCCCCChHHHHHHHHHHHHHc-CCCHHHH
Confidence 1 12 238999998 799988754 245667766666 69999999999999999998 9999999
Q ss_pred HHHHHHHHHHHhhc
Q 024300 254 AELAVSSLQVLLLL 267 (269)
Q Consensus 254 ~~~A~~~~~~~l~~ 267 (269)
+++|++++...+++
T Consensus 261 ~~~A~a~aa~~v~~ 274 (335)
T PLN02630 261 ALLGNYFGSLAVEQ 274 (335)
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999987765
No 78
>PRK10565 putative carbohydrate kinase; Provisional
Probab=99.60 E-value=1.1e-13 Score=128.01 Aligned_cols=220 Identities=15% Similarity=0.085 Sum_probs=133.7
Q ss_pred CCCccccCCCCCCCcEEEEecccccCccccccchHHHHhcCCceeeeceEE--ee-cCCCCCCcceeecCHHHHHHHHHH
Q 024300 2 APPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQ--FS-NHTGYPTFKGQVLNGQQLCDLIEG 78 (269)
Q Consensus 2 ~~~~~~~~~~~~~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~--~~-~~~g~~~~~~~~~~~~~~~~~~~~ 78 (269)
-|++....||++.|+|+.|+|+..|.++...+....++. |.+..++-+.. .. ..+..+++....+..++++.++
T Consensus 242 lp~r~~~shKg~~G~vliigGs~~~~GA~~Laa~aAlr~-GaGlv~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~~~~~-- 318 (508)
T PRK10565 242 LKPRRPTSHKGDHGRLLIIGGDHGTAGAIRMAGEAALRS-GAGLVRVLTRSENIAPLLTARPELMVHELTPDSLEESL-- 318 (508)
T ss_pred cCCCCccCCCCCCCeEEEEECCCCCccHHHHHHHHHHHh-CCCeEEEEeChhhHHHHhhcCceeEEecCCHhHHHHHh--
Confidence 377888899999999999999998888888787777753 33333332111 00 0111233322223333343332
Q ss_pred HHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHh-ccCCCcEEcCCH
Q 024300 79 LEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK-VVPVASMLTPNQ 157 (269)
Q Consensus 79 ~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~-ll~~~dii~pN~ 157 (269)
+ .++++.+|...... +...++++.+++. +.|+|+||... ..+.+. ......+||||.
T Consensus 319 -~-----~~~a~viGpGlg~~--~~~~~~~~~~~~~--~~P~VLDAdaL------------~ll~~~~~~~~~~VLTPh~ 376 (508)
T PRK10565 319 -E-----WADVVVIGPGLGQQ--EWGKKALQKVENF--RKPMLWDADAL------------NLLAINPDKRHNRVITPHP 376 (508)
T ss_pred -h-----cCCEEEEeCCCCCC--HHHHHHHHHHHhc--CCCEEEEchHH------------HHHhhCccccCCeEECCCH
Confidence 2 25666676543211 1123344556555 78999998432 111110 011257999999
Q ss_pred HHHHHhhCCCCCCH-HHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHH
Q 024300 158 FEAEQLTGFRIGSE-ADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLM 235 (269)
Q Consensus 158 ~E~~~l~g~~~~~~-~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf 235 (269)
.|+++|++...+.. .+..++++.+.+.....|++|+. ..++.+.. +..+ +.....+ ..++|+||.+
T Consensus 377 gE~~rL~~~~~~~v~~~~~~~a~~~a~~~~~~vvlKG~---~~iI~~~~--------~~~~-~~~~G~~~ma~~GsGDvL 444 (508)
T PRK10565 377 GEAARLLGCSVAEIESDRLLSARRLVKRYGGVVVLKGA---GTVIAAEP--------DALA-IIDVGNAGMASGGMGDVL 444 (508)
T ss_pred HHHHHHhCCChhhhhhhHHHHHHHHHHHhCCEEEEeCC---CcEEEcCC--------ceEE-EECCCCCCCCCCChHHHH
Confidence 99999998654332 24556677787766677888873 34555321 1333 3322223 4569999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHH
Q 024300 236 TALLLGWSNKYRDNLDIAAELAVS 259 (269)
Q Consensus 236 ~a~~~~~l~~~g~~~~~a~~~A~~ 259 (269)
+|.+++.+++ +.++.+|+..|..
T Consensus 445 aGiIaalla~-g~~~~~Aa~~a~~ 467 (508)
T PRK10565 445 SGIIGALLGQ-KLSPYDAACAGCV 467 (508)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHH
Confidence 9999999999 9999888877764
No 79
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=3.8e-11 Score=102.53 Aligned_cols=221 Identities=20% Similarity=0.141 Sum_probs=126.5
Q ss_pred CCccccCCCCCCCcEEEEecccccCccccccchHHHHhcCCceeeeceEE--e-ecCCCCCCcceeecCHHHHHHHHHHH
Q 024300 3 PPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQ--F-SNHTGYPTFKGQVLNGQQLCDLIEGL 79 (269)
Q Consensus 3 ~~~~~~~~~~~~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~--~-~~~~g~~~~~~~~~~~~~~~~~~~~~ 79 (269)
|++.+..||++.|+||.|.|+..++++...+.+..++. |.+...+-+.. . ...+-.+++....+............
T Consensus 21 ~~r~~~~HKg~~G~vliigG~~~y~GA~~laa~aAl~~-GaglV~v~~~~~~~~~~~s~~Pe~mv~~~~~~~~~~~~~~~ 99 (284)
T COG0063 21 PPRDPDSHKGDYGRVLIIGGSRGYTGAPVLAALAALRA-GAGLVSLASPPEAASALKSYLPELMVIEVEGKKLLEERELV 99 (284)
T ss_pred CCCCccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHh-CCCeEEEecchhhhhhHhhcCcceeEeecccchhhHHhhhh
Confidence 77889999999999999999998888888776666643 44333332211 0 01111223222222222222211111
Q ss_pred HhCCCccccEEEEccc--CChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccC-CCcEEcCC
Q 024300 80 EANNLLYYTHLLTGYI--GSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVP-VASMLTPN 156 (269)
Q Consensus 80 ~~~~~~~~~~i~~G~l--~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~-~~dii~pN 156 (269)
+ .+|+|.+|.. ...+..+.+.++++.. ..|+|+|+-.-. .+. .... +.. .--|+|||
T Consensus 100 ~-----~~~avviGpGlG~~~~~~~~~~~~l~~~-----~~p~ViDADaL~---~la------~~~~-~~~~~~~VlTPH 159 (284)
T COG0063 100 E-----RADAVVIGPGLGRDAEGQEALKELLSSD-----LKPLVLDADALN---LLA------ELPD-LLDERKVVLTPH 159 (284)
T ss_pred c-----cCCEEEECCCCCCCHHHHHHHHHHHhcc-----CCCEEEeCcHHH---HHH------hCcc-cccCCcEEECCC
Confidence 2 3677888743 2333334444333322 179999983211 000 0001 222 23788999
Q ss_pred HHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccCC-CCCCchHH
Q 024300 157 QFEAEQLTGFRIGS-EADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIPA-YFTGTGDL 234 (269)
Q Consensus 157 ~~E~~~l~g~~~~~-~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dt~GaGDa 234 (269)
..|+++|++.+..+ ..+-.++++.+.++....||+|+. ..++.+.. .+.+ +.....+. -+-|+||+
T Consensus 160 ~gEf~rL~g~~~~~~~~~r~~~a~~~a~~~~~vvVLKG~---~tvI~~~~--------g~~~-~n~~G~~~ma~GGtGDv 227 (284)
T COG0063 160 PGEFARLLGTEVDEIEVDRLEAARELAAKYGAVVVLKGA---VTVIADPD--------GEVF-VNPTGNPGMATGGTGDV 227 (284)
T ss_pred HHHHHHhcCCcccccccchHHHHHHHHHHcCCEEEEeCC---CCEEEcCC--------CcEE-EcCCCCHHhccCcchHH
Confidence 99999999965533 345567778888777788899873 44555321 1332 32222223 46799999
Q ss_pred HHHHHHHhhccCCC-CHHHHHHHH
Q 024300 235 MTALLLGWSNKYRD-NLDIAAELA 257 (269)
Q Consensus 235 f~a~~~~~l~~~g~-~~~~a~~~A 257 (269)
++|.+.+.|+| +. ++.+|+..|
T Consensus 228 LaGii~alLAq-~~~~~~~Aa~~g 250 (284)
T COG0063 228 LAGIIGALLAQ-GPADPLEAAAAG 250 (284)
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHH
Confidence 99999999999 62 234555443
No 80
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=99.37 E-value=7.1e-12 Score=105.31 Aligned_cols=209 Identities=19% Similarity=0.113 Sum_probs=123.7
Q ss_pred EEEEecccccCccccccchHHHHhcCCceeeeceEE--ee-cCCCCCCcceeecCH-HHHHHHHHHHHhCCCccccEEEE
Q 024300 17 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQ--FS-NHTGYPTFKGQVLNG-QQLCDLIEGLEANNLLYYTHLLT 92 (269)
Q Consensus 17 vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~--~~-~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~ 92 (269)
|+.|+|+..+.++...+....++. |.+..++-+.. .. ...-.+++....+.. +++ .+.+.++ ++|++.+
T Consensus 1 VlvigGS~~~~GA~~Laa~aAlr~-GaGlV~~~~~~~~~~~~~~~~Pe~m~~~~~~~~~~-~~~~~~~-----~~~av~i 73 (242)
T PF01256_consen 1 VLVIGGSEGYPGAAILAARAALRS-GAGLVTLATPESIAPVIASYSPEAMVSPLPSDEDV-EILELLE-----KADAVVI 73 (242)
T ss_dssp EEEEE-BTSSHHHHHHHHHHHHHT-T-SEEEEEECGCCHHHHHHHTTTSEEEETTHCCHH-HHHHHHC-----H-SEEEE
T ss_pred CEEEECCCCCCCHHHHHHHHHHHH-CCCcEEEEEcHHHHHHHHhCCceeEEecccchhhh-hhHhhhc-----cCCEEEe
Confidence 789999999999888887777753 44444443211 00 011123333334432 233 4444444 3678888
Q ss_pred cccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHH--hccCCCcEEcCCHHHHHHhhCCCCCC
Q 024300 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE--KVVPVASMLTPNQFEAEQLTGFRIGS 170 (269)
Q Consensus 93 G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~--~ll~~~dii~pN~~E~~~l~g~~~~~ 170 (269)
|...... +...++++.+.+. ..|+|+|.-- +..+.+ .......|+|||..|+.+|++.....
T Consensus 74 GPGlg~~--~~~~~~~~~~~~~--~~p~VlDADa------------L~~l~~~~~~~~~~~IlTPH~gE~~rL~~~~~~~ 137 (242)
T PF01256_consen 74 GPGLGRD--EETEELLEELLES--DKPLVLDADA------------LNLLAENPKKRNAPVILTPHPGEFARLLGKSVEI 137 (242)
T ss_dssp -TT-SSS--HHHHHHHHHHHHH--CSTEEEECHH------------HHCHHHCCCCSSSCEEEE-BHHHHHHHHTTTCHH
T ss_pred ecCCCCc--hhhHHHHHHHHhh--cceEEEehHH------------HHHHHhccccCCCCEEECCCHHHHHHHhCCcccc
Confidence 8653222 1222344555555 6789999622 222222 13456789999999999999986533
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccCCCCCCchHHHHHHHHHhhccCCCCH
Q 024300 171 EADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWSNKYRDNL 250 (269)
Q Consensus 171 ~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~a~~~~~l~~~g~~~ 250 (269)
.++..++++++.+.....|++|+. ..+++... ++.+..+...-..-+-|+||.++|.+.+.++| +.++
T Consensus 138 ~~~~~~~a~~~a~~~~~~vvLKG~---~t~I~~p~--------~~~~~n~~gn~~la~gGsGDvLaGii~~llaq-~~~~ 205 (242)
T PF01256_consen 138 QEDRIEAAREFAKEYGAVVVLKGA---VTIIASPG--------GRVYVNPTGNPGLATGGSGDVLAGIIAGLLAQ-GYDP 205 (242)
T ss_dssp CCSHHHHHHHHHHHHTSEEEEEST---SSEEEEET--------SEEEEE----GGGSSTTHHHHHHHHHHHHHHH-TSSH
T ss_pred hhhHHHHHHHHHhhcCcEEEEeCC---CcEEEecC--------cceeEeCCCCCCCCCCCcccHHHHHHHHHHHc-cCCH
Confidence 345667778887655568888873 34555421 24444433222246789999999999999999 9999
Q ss_pred HHHHHHHHHH
Q 024300 251 DIAAELAVSS 260 (269)
Q Consensus 251 ~~a~~~A~~~ 260 (269)
.+|+..|...
T Consensus 206 ~~Aa~~av~l 215 (242)
T PF01256_consen 206 FEAACLAVYL 215 (242)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 81
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=99.23 E-value=5e-10 Score=93.52 Aligned_cols=150 Identities=21% Similarity=0.192 Sum_probs=99.8
Q ss_pred EEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhcc--CCCcEEcCCHHHHHHhhCCC
Q 024300 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVV--PVASMLTPNQFEAEQLTGFR 167 (269)
Q Consensus 90 i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll--~~~dii~pN~~E~~~l~g~~ 167 (269)
|-+|.+ +.+..+.+..+++.++++ ++|+||||+..... . ++.+ ..++ ++ .++++|+.|..|...|.|..
T Consensus 55 iNiGTl-~~~~~~~m~~A~~~A~~~--~~PvVLDPVgvGas-~-~R~~---~~~~-LL~~~~~~vIrGN~sEI~aLag~~ 125 (246)
T PF02110_consen 55 INIGTL-TDERIEAMKKAAKAANEL--GIPVVLDPVGVGAS-K-FRTE---FALE-LLNNYKPTVIRGNASEIAALAGED 125 (246)
T ss_dssp EESTTS-SHHHHHHHHHHHHHHHHT--T--EEEE-TTBTTB-H-HHHH---HHHH-HHCHS--SEEEEEHHHHHHHHTCC
T ss_pred EECCCC-CHhHHHHHHHHHHHHHHc--CCCEEEeCcccCCc-H-HHHH---HHHH-HHHhCCCcEEEeCHHHHHHHhCcC
Confidence 556665 456788899999999998 99999999887321 1 1222 2223 55 48899999999999999865
Q ss_pred CC--------CHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC-CCCCCchHHHHHH
Q 024300 168 IG--------SEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTAL 238 (269)
Q Consensus 168 ~~--------~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~a~ 238 (269)
.. +.++..+.++.+.++....|++|+. -.++.++ .+.+.++.-..- ...||+||.+.+.
T Consensus 126 ~~~kGVDs~~~~~~~~~~a~~lA~k~~~vVvvTG~---~D~Isdg---------~~~~~i~nG~~~l~~itGtGC~lgal 193 (246)
T PF02110_consen 126 SKAKGVDSGDSDEDAIEAAKQLAQKYNCVVVVTGE---VDYISDG---------NRVYRIPNGSPLLSKITGTGCMLGAL 193 (246)
T ss_dssp CCSCSSSSSCGSHHHHHHHHHHHHHTTSEEEEESS---SEEEEES---------SCEEEECSSSGGGGGSTTHHHHHHHH
T ss_pred CCCCCcCcCCcchHHHHHHHHHHHhcCCEEEEecC---CcEEECC---------CeEEEeCCCChHhcceeccchHHHHH
Confidence 31 1234567888888777677888873 3455543 245555432211 3579999999999
Q ss_pred HHHhhccCCCCHHHHHHHHHHHH
Q 024300 239 LLGWSNKYRDNLDIAAELAVSSL 261 (269)
Q Consensus 239 ~~~~l~~~g~~~~~a~~~A~~~~ 261 (269)
++++++. ..+..+++..|..+.
T Consensus 194 iaaf~av-~~d~~~aa~~a~~~~ 215 (246)
T PF02110_consen 194 IAAFLAV-AEDPLEAAVAAVALY 215 (246)
T ss_dssp HHHHHCC-CSSHHHHHHHHHHHH
T ss_pred HHHHHhc-cccchHHHHHHHHHH
Confidence 9999998 677777776665543
No 82
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=99.20 E-value=1.5e-09 Score=89.70 Aligned_cols=165 Identities=18% Similarity=0.129 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhcc
Q 024300 68 NGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVV 147 (269)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll 147 (269)
.+++++++.+ +.+ .=.|-+|.+. .+..+.+..+++.+++. +.|+||||+..... . ++.+ +.+.+|
T Consensus 45 ~~eE~~e~~k-ia~-----AL~INIGTL~-~~~~~~m~~A~~~An~~--~~PvvLDPVgvgAt-~-~R~~----~~~~LL 109 (265)
T COG2145 45 APEEVEEFAK-IAD-----ALLINIGTLS-AERIQAMRAAIKAANES--GKPVVLDPVGVGAT-K-FRTK----FALELL 109 (265)
T ss_pred CHHHHHHHHH-hcc-----ceEEeeccCC-hHHHHHHHHHHHHHHhc--CCCEEecCccCCch-H-HHHH----HHHHHH
Confidence 4456655543 222 1247788885 46788899999999998 99999999987321 1 1222 222244
Q ss_pred C--CCcEEcCCHHHHHHhhCCCC--------CCHHHHHHHHHHHHhcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceE
Q 024300 148 P--VASMLTPNQFEAEQLTGFRI--------GSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQF 217 (269)
Q Consensus 148 ~--~~dii~pN~~E~~~l~g~~~--------~~~~~~~~a~~~l~~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~ 217 (269)
. +.++|++|..|...|.|... ...++..+.++.+.+.....|++|+- -.++.++ .+.+
T Consensus 110 ~~~~~~~IrGN~sEI~~Lag~~~~~kGVDa~~~~~~~~~~a~~~A~~~~~vvvvTG~---vD~Isdg---------~~~~ 177 (265)
T COG2145 110 AEVKPAAIRGNASEIAALAGEAGGGKGVDAGDGAADAIEAAKKAAQKYGTVVVVTGE---VDYISDG---------TRVV 177 (265)
T ss_pred HhcCCcEEeccHHHHHHHhcccccccccccccchhhHHHHHHHHHHHhCcEEEEECC---eeEEEcC---------CeEE
Confidence 4 47999999999999987542 23456677777777666667778773 2344443 2444
Q ss_pred EEEccccC-CCCCCchHHHHHHHHHhhccCCCC-HHHHHHHHHHH
Q 024300 218 KIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDN-LDIAAELAVSS 260 (269)
Q Consensus 218 ~~~~~~~~-~dt~GaGDaf~a~~~~~l~~~g~~-~~~a~~~A~~~ 260 (269)
.+.....- ...||+||.+.|..+++++. ..+ ..+|+..|..+
T Consensus 178 ~i~nG~pll~~ItGtGCllgav~aaF~av-~~d~~~~A~~~A~~~ 221 (265)
T COG2145 178 VIHNGSPLLGKITGTGCLLGAVVAAFLAV-EKDPLLDAAAEACAV 221 (265)
T ss_pred EEECCCcHHhhhhccccHHHHHHHHHHhc-CCCHHHHHHHHHHHH
Confidence 44432211 46799999999999999998 677 56666665543
No 83
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=1.5e-09 Score=89.27 Aligned_cols=215 Identities=19% Similarity=0.196 Sum_probs=121.4
Q ss_pred CCCccccCCCCCCCcEEEEecccccCccccccchHHHHhcCCceeeeceEEe--ecCCCCCC-ccee-ecCH-HHHHHHH
Q 024300 2 APPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQF--SNHTGYPT-FKGQ-VLNG-QQLCDLI 76 (269)
Q Consensus 2 ~~~~~~~~~~~~~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~--~~~~g~~~-~~~~-~~~~-~~~~~~~ 76 (269)
-||++++-||+..|+|..|+|..-|.++...+++..++ .|-|.+++-.... ..-.+|.. .... .++. +.++...
T Consensus 18 iP~L~~~kHKGq~GrvgViGGc~eYTGAPYFaa~sa~~-~GaDL~HiFCe~~Aa~vIKsYsPdLIVHP~l~~~~av~~i~ 96 (306)
T KOG3974|consen 18 IPPLLSNKHKGQSGRVGVIGGCLEYTGAPYFAAISALR-VGADLSHIFCEPEAAVVIKSYSPDLIVHPVLDQENAVDIIE 96 (306)
T ss_pred cCCccCcccCCCccceEEEcccccccCccHHHHHHHHH-hccceeeeeechhHHHHHhhcCCceeecccccCCchHhHHH
Confidence 59999999999999999999998888877777665554 5777777754320 00011211 1111 1111 1222221
Q ss_pred HHHHhCCCccccEEEEc--ccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCC-CcEE
Q 024300 77 EGLEANNLLYYTHLLTG--YIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPV-ASML 153 (269)
Q Consensus 77 ~~~~~~~~~~~~~i~~G--~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~-~dii 153 (269)
+-+++ ..++.+| ..-++.....+..+++.++++ ++|+|+|. +.+|+-++..+.+ +-.+ .-|+
T Consensus 97 k~L~R-----lhavVIGPGLGRdp~~~k~i~~iley~~~~--dvP~VIDa-----DGL~Lv~q~~e~l---~~~~~~viL 161 (306)
T KOG3974|consen 97 KLLQR-----LHAVVIGPGLGRDPAILKEIAKILEYLRGK--DVPLVIDA-----DGLWLVEQLPERL---IGGYPKVIL 161 (306)
T ss_pred HHHhh-----eeEEEECCCCCCCHHHHHHHHHHHHHHhcC--CCcEEEcC-----CceEehhhchhhh---hccCceeee
Confidence 12232 2345555 444555567889999999988 99999996 4466544433322 1123 3578
Q ss_pred cCCHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccCCCCCCch
Q 024300 154 TPNQFEAEQLTGFRIGSEADGREACKILH-AAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTG 232 (269)
Q Consensus 154 ~pN~~E~~~l~g~~~~~~~~~~~a~~~l~-~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dt~GaG 232 (269)
|||.-|+.+|++....+.++ ...+..|. ++....|+-|+ . ...++..+ .+....+.+.-...--|-|
T Consensus 162 TPNvvEFkRLcd~~l~~~d~-~~~~~~L~~~l~nv~vvqKG-~-~D~ils~~---------~ev~~~s~eGs~kRcGGQG 229 (306)
T KOG3974|consen 162 TPNVVEFKRLCDAELDKVDS-HSQMQHLAAELMNVTVVQKG-E-SDKILSPD---------SEVRVCSTEGSLKRCGGQG 229 (306)
T ss_pred CCcHHHHHHHHHHhhccccc-hHHHHHHHHHhcCeEEEEec-C-CceeeCCC---------CeeEEccCCCCccccCCCc
Confidence 99999999999864322222 22233333 33333344443 2 22233211 1333222211112346999
Q ss_pred HHHHHHHHHhhc
Q 024300 233 DLMTALLLGWSN 244 (269)
Q Consensus 233 Daf~a~~~~~l~ 244 (269)
|.++|.++..++
T Consensus 230 DiLaGsla~fl~ 241 (306)
T KOG3974|consen 230 DILAGSLATFLS 241 (306)
T ss_pred chhhhHHHHHHH
Confidence 999998877664
No 84
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.04 E-value=5.7e-09 Score=85.14 Aligned_cols=198 Identities=17% Similarity=0.160 Sum_probs=112.4
Q ss_pred chHHHHhcCCceeeeceEE---------eecCCCCCCc-----ceeecCHHHHHHHHHHHHhCCCccccEEEEcccCChh
Q 024300 34 AVFPLQLLGYDVDPIHSVQ---------FSNHTGYPTF-----KGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVS 99 (269)
Q Consensus 34 ~~~~l~~~Gv~~~~i~~~~---------~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~ 99 (269)
.+.-|+..|||+++.+-.. .+..+|...+ ..+.++.+++.++ ++++..|+|+.+ - -+.+
T Consensus 73 lLddl~~rgIdishcpftd~~pp~ssiI~~r~s~trTil~~dks~p~vT~~dF~kv--dl~qy~WihfE~----R-np~e 145 (308)
T KOG2947|consen 73 LLDDLRRRGIDISHCPFTDHSPPFSSIIINRNSGTRTILYCDKSLPDVTATDFEKV--DLTQYGWIHFEA----R-NPSE 145 (308)
T ss_pred HHHHHHhcCCCcccCccccCCCCcceEEEecCCCceEEEEecCCCccccHHHhhhc--ccceeeeEEEec----C-ChHH
Confidence 5667888888888775221 1111221111 1245667777754 567766655321 1 1223
Q ss_pred hHHHHHHHHHHHHhcCC---CceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCHHHHHH
Q 024300 100 FLNTILQVVEKLRSINP---NLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGRE 176 (269)
Q Consensus 100 ~~~~i~~~l~~~k~~~~---~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~~~~~~ 176 (269)
..+.+..+.++= ++.| ++.|.+|.-- . .+..- ++...+|+++...+=++.+ |. .+.++
T Consensus 146 tlkM~~~I~~~N-~r~pe~qrI~vSvd~en-------~----req~~-~l~am~DyVf~sK~~a~~~-gf-----ks~re 206 (308)
T KOG2947|consen 146 TLKMLQRIDAHN-TRQPEEQRIRVSVDVEN-------P----REQLF-QLFAMCDYVFVSKDVAKHL-GF-----KSPRE 206 (308)
T ss_pred HHHHHHHHHHhh-cCCCccceEEEEEEecC-------c----HHHHH-HHhhcccEEEEEHHHHhhh-cc-----CCHHH
Confidence 333333333322 2212 3556677411 1 12222 2788999999988877766 33 13344
Q ss_pred HHHHHHh----cCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEccccC--CCCCCchHHHHHHHHHhhccCCCCH
Q 024300 177 ACKILHA----AGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP--AYFTGTGDLMTALLLGWSNKYRDNL 250 (269)
Q Consensus 177 a~~~l~~----~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dt~GaGDaf~a~~~~~l~~~g~~~ 250 (269)
+...+.. -+++-|+|---...|+-..... +++++.++.+.+ +|+.|+||+|+|+|++++.+.+.++
T Consensus 207 a~~~l~~r~~~~~pkpv~I~~w~~eGA~~l~ad--------g~yfev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~~r~l 278 (308)
T KOG2947|consen 207 ACEGLYGRVPKGKPKPVLICPWASEGAGALGAD--------GKYFEVDAFKPPKVVDTLGAGDTFNAGVIYALLKQGRSL 278 (308)
T ss_pred HHHHHHhhcccCCCCcEEEeccccccccccCCC--------CCEEecCCCCCccceeeccCCCcchHHHHHHHHHhhhhH
Confidence 4444432 2355565553223444333211 356666654433 6999999999999999954339999
Q ss_pred HHHHHHHHHHHHHHh
Q 024300 251 DIAAELAVSSLQVLL 265 (269)
Q Consensus 251 ~~a~~~A~~~~~~~l 265 (269)
.||+++|+.+++.-|
T Consensus 279 ~eAvdfg~rvas~Kl 293 (308)
T KOG2947|consen 279 AEAVDFGNRVASKKL 293 (308)
T ss_pred HHHHHHHHHhhhccc
Confidence 999999999998654
No 85
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=98.43 E-value=4.5e-06 Score=74.18 Aligned_cols=211 Identities=16% Similarity=0.142 Sum_probs=119.3
Q ss_pred ccCccccccchHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHH
Q 024300 25 VQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTI 104 (269)
Q Consensus 25 ~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i 104 (269)
.+|+++.+- ...+..+|-++..+..+. +.++- .+ ....+.+.++.- +++.+ .+.|+.. +......+
T Consensus 375 a~GGVarN~-A~a~~~lg~d~~liSavG--~d~n~-~~-~~~~~~~~~e~~-~dl~~-----a~~I~~D---sNiS~~~M 440 (614)
T KOG3009|consen 375 AMGGVARNH-ADALARLGCDSVLISAVG--DDNNG-HF-FRQNSHKIVESN-EDLLS-----ADFILLD---SNISVPVM 440 (614)
T ss_pred hccchhhhH-HHHHHHhcCCeeEEEEec--cCCcc-hh-hhhhhhhhhhhh-hhhhc-----CCEEEEc---CCCCHHHH
Confidence 466666432 335677888888888765 32211 11 011121222221 22222 3445433 34556677
Q ss_pred HHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHh-hCCCC-------CCHHHHHH
Q 024300 105 LQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQL-TGFRI-------GSEADGRE 176 (269)
Q Consensus 105 ~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l-~g~~~-------~~~~~~~~ 176 (269)
.++++ +|++ +.+|+|+|...+. ..+.++-....-++.++||..|+-.. .+... +..+...+
T Consensus 441 a~il~-ak~~--k~~V~fEPTd~~k--------~~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~nps~~q~~~~~~~ 509 (614)
T KOG3009|consen 441 ARILE-AKKH--KKQVWFEPTDIDK--------VKKVFKTLLVGAITAISPNANELLKAAKLCHVSVNPSVIQTADGVLE 509 (614)
T ss_pred HHHHH-hhhc--cCceEecCCCchh--------hhhhhhhcceeeEEeeCCCHHHHHHHhhcCceeeChhhhccchHHHH
Confidence 77777 8887 8999999955421 11222221223579999999998433 22221 12233333
Q ss_pred HHHHHH---hcCCCeEEEEeeecCCcEEEEeeeccCCCCCCceEEEEcc-ccC--CCCCCchHHHHHHHHHhhccCCCCH
Q 024300 177 ACKILH---AAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIP-KIP--AYFTGTGDLMTALLLGWSNKYRDNL 250 (269)
Q Consensus 177 a~~~l~---~~g~~~Vvvt~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~dt~GaGDaf~a~~~~~l~~~g~~~ 250 (269)
..+.+. .......++|.. .+|.++...+.. +. -+...++.+ ... ++..|+||+|.++++++++. +.++
T Consensus 510 ~~~~~~~k~~~~~s~~I~tl~-~~G~l~~yr~k~---g~-l~~~s~~p~~~~~n~vsvsgaGdsf~~g~i~~l~~-~~~v 583 (614)
T KOG3009|consen 510 LIEKEKTKLLLNTSIFIVTLA-NKGSLVVYRNKL---GQ-LEFQSLPPPLQMNNVVSVSGAGDSFNSGVIAGLAH-NKTV 583 (614)
T ss_pred HHHHHHHHhhcccceEEEEec-cCceEEEecCCC---CC-cccccCCCcccccceeEeccCCcccccceeehhhc-Ccch
Confidence 333332 235567788885 578876543211 10 011122222 222 36689999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHhh
Q 024300 251 DIAAELAVSSLQVLLL 266 (269)
Q Consensus 251 ~~a~~~A~~~~~~~l~ 266 (269)
.+++.-+..++...++
T Consensus 584 ~es~~gg~~~~ralls 599 (614)
T KOG3009|consen 584 VESLQGGQECARALLS 599 (614)
T ss_pred HhhccccHHHHHHHHh
Confidence 9999999877777665
No 86
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=93.34 E-value=1.5 Score=40.34 Aligned_cols=82 Identities=16% Similarity=0.071 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCC---CC-----CCHHHHH
Q 024300 104 ILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF---RI-----GSEADGR 175 (269)
Q Consensus 104 i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~---~~-----~~~~~~~ 175 (269)
..+.++..++.++++++-+.-... .+.+..+.+.+.+++++|.+=.|+.|+..++.. .. .+.+++.
T Consensus 239 ~~~~i~~l~~~~~~i~iH~E~As~------~~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g~~~~~i~~~~~~~v~ 312 (453)
T PRK14039 239 SLAQLKWWKSKNEKLRIHAELGHF------ASKEIANSVFLILAGIVDSIGMNEDELAMLANLHGIPAEGILEMNAEAIG 312 (453)
T ss_pred HHHHHHHHHhcCCCceEEEEecCc------ccHHHHHHHHHHhhcccccccCCHHHHHHHHHHcccchhhHhhcCHHHHH
Confidence 344444444455678888885332 345666666656999999999999999998754 21 2456777
Q ss_pred HHHHHHH-hcCCCeEEE
Q 024300 176 EACKILH-AAGPAKVVI 191 (269)
Q Consensus 176 ~a~~~l~-~~g~~~Vvv 191 (269)
+++.+|. +.|.+.+.|
T Consensus 313 ea~~~l~~~~~le~l~v 329 (453)
T PRK14039 313 EAACQLASESGLQRLII 329 (453)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 8888776 457766544
No 87
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=92.38 E-value=3.1 Score=38.37 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhCCCccccE-EEEcccCCh----------hhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhh
Q 024300 70 QQLCDLIEGLEANNLLYYTH-LLTGYIGSV----------SFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSEL 138 (269)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~-i~~G~l~~~----------~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~ 138 (269)
+++...++.+.. .+|+ |++|+..-. +..+.+.+.++.+++.++++++-|.-... .+.+.
T Consensus 210 eef~~~L~ei~~----~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~~~i~~L~~~~~~i~iH~E~As~------~~~~i 279 (463)
T PRK03979 210 DELKEFLPEIGK----MVDGAILSGYQGIKEEYSDGKTAEYYLKRAKEDIKLLKKKNKDIKIHVEFASI------QNREI 279 (463)
T ss_pred HHHHHHHHhhcc----CCCEEEEechhhhhccccccccHHHHHHHHHHHHHHHhhCCCCceEEEEeccc------cCHHH
Confidence 445555444321 3564 677764211 12444555666676666788988885332 34566
Q ss_pred HHHHHHhccCCCcEEcCCHHHHHHhhC---CC--------CCCHHHHHHHHHHHHh-cCCCeEEE
Q 024300 139 VSVYREKVVPVASMLTPNQFEAEQLTG---FR--------IGSEADGREACKILHA-AGPAKVVI 191 (269)
Q Consensus 139 ~~~~~~~ll~~~dii~pN~~E~~~l~g---~~--------~~~~~~~~~a~~~l~~-~g~~~Vvv 191 (269)
.+.+.+.+++++|.+-.|+.|+..++. .. .+..+++.+++..|.+ .+.+.+.|
T Consensus 280 r~~i~~~ilp~vDSlGmNE~ELa~l~~~lg~~~l~~~i~~~~~i~~v~~a~~~L~~~~~leri~v 344 (463)
T PRK03979 280 RKKIITYILPHVDSVGMDETEIANILNVLGYEELSERILKESRIEDVIEGAKILLDELNLERVQV 344 (463)
T ss_pred HHHHHHhhccccccccCCHHHHHHHHHHhcCcchhhhhhccccHHHHHHHHHHHHHHcCCCEEEE
Confidence 666665699999999999999997653 21 1235677778777764 57665543
No 88
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.87 E-value=6.3 Score=35.99 Aligned_cols=151 Identities=16% Similarity=0.179 Sum_probs=89.2
Q ss_pred CCCCCCCcEEEEecccccCcccccc-chHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccc
Q 024300 9 ALPSETGRVLSIQSHTVQGYVGNKS-AVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYY 87 (269)
Q Consensus 9 ~~~~~~~~vl~i~g~~~~g~~G~~a-~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (269)
..+..+|.|+...|..+.|+=-.-+ ....|+..|..+-.+.+++ | .+..++++...-++.. .
T Consensus 94 ~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~------~--------RpAA~eQL~~La~q~~---v 156 (451)
T COG0541 94 NLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADT------Y--------RPAAIEQLKQLAEQVG---V 156 (451)
T ss_pred ccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEeccc------C--------ChHHHHHHHHHHHHcC---C
Confidence 3346788999999999888754433 3345666777666555443 1 1233333322222222 2
Q ss_pred cEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHH--HHHhhC
Q 024300 88 THLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE--AEQLTG 165 (269)
Q Consensus 88 ~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E--~~~l~g 165 (269)
+ ..+......+.++..+.++++++++ --.+++|...| +-.+++..+.+++ --+++.|++.= ...+.|
T Consensus 157 ~--~f~~~~~~~Pv~Iak~al~~ak~~~-~DvvIvDTAGR----l~ide~Lm~El~~----Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 157 P--FFGSGTEKDPVEIAKAALEKAKEEG-YDVVIVDTAGR----LHIDEELMDELKE----IKEVINPDETLLVVDAMIG 225 (451)
T ss_pred c--eecCCCCCCHHHHHHHHHHHHHHcC-CCEEEEeCCCc----ccccHHHHHHHHH----HHhhcCCCeEEEEEecccc
Confidence 2 2233223456788899999999862 23678998555 3367776665554 23444554321 122334
Q ss_pred CCCCCHHHHHHHHHHHHh-cCCCeEEEEe
Q 024300 166 FRIGSEADGREACKILHA-AGPAKVVITS 193 (269)
Q Consensus 166 ~~~~~~~~~~~a~~~l~~-~g~~~Vvvt~ 193 (269)
++....++.|++ .+...|++|.
T Consensus 226 ------QdA~~~A~aF~e~l~itGvIlTK 248 (451)
T COG0541 226 ------QDAVNTAKAFNEALGITGVILTK 248 (451)
T ss_pred ------hHHHHHHHHHhhhcCCceEEEEc
Confidence 577777888874 6888899995
No 89
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=90.08 E-value=6.9 Score=35.98 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhCCCcccc-EEEEcccCCh----------hhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhh
Q 024300 70 QQLCDLIEGLEANNLLYYT-HLLTGYIGSV----------SFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSEL 138 (269)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~-~i~~G~l~~~----------~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~ 138 (269)
++++..++.+.. .+| +|++|+-.-. +..+...+.++.++++ +++++-|.-... .+.+.
T Consensus 197 ~~l~~~~~~i~~----~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~~i~~L~~~-~~i~iH~E~As~------~~~~l 265 (446)
T TIGR02045 197 DQLRKFLPEIGE----PVDGAILSGYQGIKEEYSDGKTAKYYLERAKEDIELLKKN-KDLKIHVEFASI------QNREI 265 (446)
T ss_pred HHHHHhhhhhhh----cccEEEEEchhhhhhhccCCccHhHHHHHHHHHHHHHhhC-CCCeEEEEeccc------ccHHH
Confidence 455555555532 245 4677764211 1344555666666553 688888885332 34566
Q ss_pred HHHHHHhccCCCcEEcCCHHHHHHhh---CCC--------CCCHHHHHHHHHHHH-hcCCCeEEE
Q 024300 139 VSVYREKVVPVASMLTPNQFEAEQLT---GFR--------IGSEADGREACKILH-AAGPAKVVI 191 (269)
Q Consensus 139 ~~~~~~~ll~~~dii~pN~~E~~~l~---g~~--------~~~~~~~~~a~~~l~-~~g~~~Vvv 191 (269)
.+.+...+++++|.+-.|+.|+..++ |.. .+..+++.+++..|. +.+.+.|.+
T Consensus 266 ~~~i~~~ilp~vDSlGMNE~ELa~ll~~lg~~~l~~~i~~~~~i~~vi~a~~~l~~~~~leri~v 330 (446)
T TIGR02045 266 RKKVVTNIFPHVDSVGMDEAEIANVLSVLGYDELSDRIFRYNRIEDLILGAKILLDELNLEVVQV 330 (446)
T ss_pred HHHHHHhhccccccccCCHHHHHHHHHHhcCCchhhhhhccccHHHHHHHHHHHHHHcCCCEEEE
Confidence 66666569999999999999999887 321 133567777777776 457665543
No 90
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=89.68 E-value=10 Score=31.23 Aligned_cols=85 Identities=11% Similarity=0.094 Sum_probs=54.6
Q ss_pred cEE-EEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEE-----cCCHHHHH
Q 024300 88 THL-LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASML-----TPNQFEAE 161 (269)
Q Consensus 88 ~~i-~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii-----~pN~~E~~ 161 (269)
.+| .+|--| -.+.+.+.++++.+|+. ++.+.+|.+.. .+.+. +++ +++++|.+ ..+.+...
T Consensus 40 gGVt~SGGEP-llq~~fl~~l~~~~k~~--gi~~~leTnG~------~~~~~---~~~-l~~~~D~~l~DiK~~d~~~~~ 106 (213)
T PRK10076 40 GGVTLSGGEV-LMQAEFATRFLQRLRLW--GVSCAIETAGD------APASK---LLP-LAKLCDEVLFDLKIMDATQAR 106 (213)
T ss_pred CEEEEeCchH-HcCHHHHHHHHHHHHHc--CCCEEEECCCC------CCHHH---HHH-HHHhcCEEEEeeccCCHHHHH
Confidence 344 444333 24467788999999998 99999998654 22232 232 55565544 45666777
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCCe
Q 024300 162 QLTGFRIGSEADGREACKILHAAGPAK 188 (269)
Q Consensus 162 ~l~g~~~~~~~~~~~a~~~l~~~g~~~ 188 (269)
.++|.. .+.+.+.++.+.+.|...
T Consensus 107 ~~tG~~---~~~il~nl~~l~~~g~~v 130 (213)
T PRK10076 107 DVVKMN---LPRVLENLRLLVSEGVNV 130 (213)
T ss_pred HHHCCC---HHHHHHHHHHHHhCCCcE
Confidence 888853 356667777777777543
No 91
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=89.33 E-value=5.4 Score=36.73 Aligned_cols=98 Identities=10% Similarity=0.038 Sum_probs=58.9
Q ss_pred ccE-EEEcccC-Chh-hHHHHHHHHHHHHh-cCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHH
Q 024300 87 YTH-LLTGYIG-SVS-FLNTILQVVEKLRS-INPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQ 162 (269)
Q Consensus 87 ~~~-i~~G~l~-~~~-~~~~i~~~l~~~k~-~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~ 162 (269)
+|+ |++|+-. ... ..+.+.++.+.++. +.+++++=+.-... .+++..+.+.+ +++++|-+-.|+.|+..
T Consensus 225 ~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs~------~d~~~r~~i~~-ilp~vDSlGmNE~ELa~ 297 (453)
T PRK14038 225 AELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFAFT------PDETVREEILG-LLGKFYSVGLNEVELAS 297 (453)
T ss_pred CCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeecc------chHHHHHHHHh-hCccccccccCHHHHHH
Confidence 564 6777642 111 12233333333333 12367777775322 34556666665 89999999999999998
Q ss_pred hhC---C--------CCC--CHHHHHHHHHHHHh-cCCCeEEE
Q 024300 163 LTG---F--------RIG--SEADGREACKILHA-AGPAKVVI 191 (269)
Q Consensus 163 l~g---~--------~~~--~~~~~~~a~~~l~~-~g~~~Vvv 191 (269)
++. . ..+ +.+++.+++.+|.+ .|.+.+.+
T Consensus 298 ll~~lg~~~l~~~i~~~~~~~~~~v~e~~~~L~~~~gleri~v 340 (453)
T PRK14038 298 IMEVMGEKTLAEKLLAKDPVDPIAVTEAMLKLAEKTGVKRIHF 340 (453)
T ss_pred HHHHhccchhhhhhhhcCccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 874 2 112 56778888888875 57666543
No 92
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=78.67 E-value=22 Score=25.73 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=43.0
Q ss_pred ccccccchHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHH
Q 024300 28 YVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQV 107 (269)
Q Consensus 28 ~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~ 107 (269)
-.|.......|++.|.++..+... .+.+++ .+.+.+. .+|.|.+..... .......++
T Consensus 14 ~lGl~~la~~l~~~G~~v~~~d~~---------------~~~~~l---~~~~~~~---~pd~V~iS~~~~-~~~~~~~~l 71 (121)
T PF02310_consen 14 PLGLLYLAAYLRKAGHEVDILDAN---------------VPPEEL---VEALRAE---RPDVVGISVSMT-PNLPEAKRL 71 (121)
T ss_dssp SHHHHHHHHHHHHTTBEEEEEESS---------------B-HHHH---HHHHHHT---TCSEEEEEESSS-THHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCeEEEECCC---------------CCHHHH---HHHHhcC---CCcEEEEEccCc-CcHHHHHHH
Confidence 345555566778888866544211 112333 3334332 267766654222 345667888
Q ss_pred HHHHHhcCCCceEEEc
Q 024300 108 VEKLRSINPNLIYVCD 123 (269)
Q Consensus 108 l~~~k~~~~~~~vv~D 123 (269)
++.+|+.+|++++++=
T Consensus 72 ~~~~k~~~p~~~iv~G 87 (121)
T PF02310_consen 72 ARAIKERNPNIPIVVG 87 (121)
T ss_dssp HHHHHTTCTTSEEEEE
T ss_pred HHHHHhcCCCCEEEEE
Confidence 8889888888888775
No 93
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=78.25 E-value=8.9 Score=35.43 Aligned_cols=58 Identities=24% Similarity=0.270 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhC
Q 024300 101 LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (269)
Q Consensus 101 ~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g 165 (269)
.+.+.+.++.+++ +++++|-|.-... .+++..+.+.+.++|++|.+=.|+.|+..++.
T Consensus 235 l~~~~~~i~~l~~-~~~~~iH~E~As~------~d~~l~~~i~~~ilp~vDSlGmNEqEL~~l~~ 292 (444)
T PF04587_consen 235 LKRLKEQIKLLKS-NPDIPIHLELASF------ADEELRKEILEKILPHVDSLGMNEQELANLLS 292 (444)
T ss_dssp HHHHHHHHHHHH--HTT-EEEEE----------SSHHHHHHHHHHHGGGSSEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCCCceEEEeccc------cCHHHHHHHHHHhhccccccccCHHHHHHHHH
Confidence 3445555566664 3589998885332 45676766666699999999999999998753
No 94
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=76.62 E-value=28 Score=32.66 Aligned_cols=99 Identities=18% Similarity=0.151 Sum_probs=55.8
Q ss_pred chHHHHhcC-CceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHH
Q 024300 34 AVFPLQLLG-YDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLR 112 (269)
Q Consensus 34 ~~~~l~~~G-v~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k 112 (269)
+...|+..| .++..+-... ..++.+++.+. +.+. .+|+|.+..... ......++++.+|
T Consensus 28 lAa~L~~~G~~~V~iiD~~~------------~~~~~~~~~~~---l~~~---~pdvVgis~~t~--~~~~a~~~~~~~k 87 (497)
T TIGR02026 28 IGGALLDAGYHDVTFLDAMT------------GPLTDEKLVER---LRAH---CPDLVLITAITP--AIYIACETLKFAR 87 (497)
T ss_pred HHHHHHhcCCcceEEecccc------------cCCCHHHHHHH---HHhc---CcCEEEEecCcc--cHHHHHHHHHHHH
Confidence 444678888 5665553211 23444444443 3322 267776655432 3455667888888
Q ss_pred hcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHH
Q 024300 113 SINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAE 161 (269)
Q Consensus 113 ~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~ 161 (269)
+.+|+++||+=-.... +..++ .+. -.+.+|++...+.|..
T Consensus 88 ~~~P~~~iV~GG~h~t----~~~~~---~l~--~~p~vD~Vv~GEGE~~ 127 (497)
T TIGR02026 88 ERLPNAIIVLGGIHPT----FMFHQ---VLT--EAPWIDFIVRGEGEET 127 (497)
T ss_pred HHCCCCEEEEcCCCcC----cCHHH---HHh--cCCCccEEEeCCcHHH
Confidence 8888999887532211 11222 121 2467899998888754
No 95
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=71.14 E-value=15 Score=31.16 Aligned_cols=87 Identities=16% Similarity=0.207 Sum_probs=53.1
Q ss_pred EEEEecccccCcccccc---chHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccE-EEE
Q 024300 17 VLSIQSHTVQGYVGNKS---AVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLT 92 (269)
Q Consensus 17 vl~i~g~~~~g~~G~~a---~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~ 92 (269)
|++|+.--..|..=+.. +.+.|...|+++..++++. + . .+.+.+.+....+ ++|. |..
T Consensus 6 iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~Vg--D----------~--~~~I~~~l~~a~~----r~D~vI~t 67 (255)
T COG1058 6 IIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVG--D----------N--PDRIVEALREASE----RADVVITT 67 (255)
T ss_pred EEEEccceecCceecchHHHHHHHHHhcCceEEEEEecC--C----------C--HHHHHHHHHHHHh----CCCEEEEC
Confidence 55555556788877655 4557899999988887664 1 1 2333333333222 2453 566
Q ss_pred cccCChhhHHHHHHHHHHHHhcCCCceEEEcccc
Q 024300 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVM 126 (269)
Q Consensus 93 G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~ 126 (269)
|-|++ ..-|...+.+.++- +.+.++|+..
T Consensus 68 GGLGP-T~DDiT~e~vAka~----g~~lv~~~~a 96 (255)
T COG1058 68 GGLGP-THDDLTAEAVAKAL----GRPLVLDEEA 96 (255)
T ss_pred CCcCC-CccHhHHHHHHHHh----CCCcccCHHH
Confidence 66654 44566666666553 7799999744
No 96
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=69.51 E-value=37 Score=27.03 Aligned_cols=72 Identities=15% Similarity=0.066 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHH---hhCCCCCCHHHHHHH
Q 024300 101 LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQ---LTGFRIGSEADGREA 177 (269)
Q Consensus 101 ~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~---l~g~~~~~~~~~~~a 177 (269)
.+.+..+-+..+++ ++.|+.||-. ..+..++.+.+ .+|.+........++.. =.|.+-.+.+++.++
T Consensus 35 ~~~i~~i~~~~~~r--gVIIfTDpD~-------~GekIRk~i~~-~vp~~khafi~~~~a~~~~~~iGVE~As~e~I~~A 104 (174)
T TIGR00334 35 DETINLIKKAQKKQ--GVIILTDPDF-------PGEKIRKKIEQ-HLPGYENCFIPKHLAKPNKKKIGVEEASVEAIIAA 104 (174)
T ss_pred HHHHHHHHHHhhcC--CEEEEeCCCC-------chHHHHHHHHH-HCCCCeEEeeeHHhcCcCCCCcccCCCCHHHHHHH
Confidence 34444444444555 8999999933 33345555555 56877766666666532 245555667788887
Q ss_pred HHHHH
Q 024300 178 CKILH 182 (269)
Q Consensus 178 ~~~l~ 182 (269)
+....
T Consensus 105 L~~~~ 109 (174)
T TIGR00334 105 LENVH 109 (174)
T ss_pred HHHhc
Confidence 76553
No 97
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=67.72 E-value=82 Score=27.95 Aligned_cols=153 Identities=10% Similarity=0.069 Sum_probs=83.6
Q ss_pred CCCCcEEEEecccccCcccccc-chHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEE
Q 024300 12 SETGRVLSIQSHTVQGYVGNKS-AVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHL 90 (269)
Q Consensus 12 ~~~~~vl~i~g~~~~g~~G~~a-~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 90 (269)
..-+.|+.+.|..+.|+--..+ ....+...|..+-..-.++ +....+++ ++.|.+.. .+++|
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DT--------------FRAaAiEQ-L~~w~er~--gv~vI 198 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDT--------------FRAAAIEQ-LEVWGERL--GVPVI 198 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecch--------------HHHHHHHH-HHHHHHHh--CCeEE
Confidence 4558999999998888755444 3335677776554433333 22233333 33343311 24545
Q ss_pred EEcccCChhhHHHHHHHHHHHHhcCCCc-eEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHH--HHhhCCC
Q 024300 91 LTGYIGSVSFLNTILQVVEKLRSINPNL-IYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA--EQLTGFR 167 (269)
Q Consensus 91 ~~G~l~~~~~~~~i~~~l~~~k~~~~~~-~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~--~~l~g~~ 167 (269)
.-. ....+...+.+++++++.+ +. .|++|...|- --...+.+.|++ -..++.+...++ +.|+..+
T Consensus 199 ~~~--~G~DpAaVafDAi~~Akar--~~DvvliDTAGRL----hnk~nLM~EL~K----I~rV~~k~~~~ap~e~llvlD 266 (340)
T COG0552 199 SGK--EGADPAAVAFDAIQAAKAR--GIDVVLIDTAGRL----HNKKNLMDELKK----IVRVIKKDDPDAPHEILLVLD 266 (340)
T ss_pred ccC--CCCCcHHHHHHHHHHHHHc--CCCEEEEeCcccc----cCchhHHHHHHH----HHHHhccccCCCCceEEEEEE
Confidence 432 2335566888999999998 54 5678986652 123344444443 233444433321 1222222
Q ss_pred CCCHHHHHHHHHHHHh-cCCCeEEEEe
Q 024300 168 IGSEADGREACKILHA-AGPAKVVITS 193 (269)
Q Consensus 168 ~~~~~~~~~a~~~l~~-~g~~~Vvvt~ 193 (269)
..+-++...-++.|++ .+...+++|.
T Consensus 267 AttGqnal~QAk~F~eav~l~GiIlTK 293 (340)
T COG0552 267 ATTGQNALSQAKIFNEAVGLDGIILTK 293 (340)
T ss_pred cccChhHHHHHHHHHHhcCCceEEEEe
Confidence 2222455666778875 4778888885
No 98
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=67.51 E-value=49 Score=26.79 Aligned_cols=116 Identities=13% Similarity=0.138 Sum_probs=61.7
Q ss_pred CCcEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEEc
Q 024300 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTG 93 (269)
Q Consensus 14 ~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G 93 (269)
.++||...--.-..-+|..-....|+..|.++..+- ..++.+++.+..... .+++|.+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG---------------~~~p~~~l~~~~~~~------~~d~v~lS 140 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG---------------RDVPPEEFVEAVKEH------KPDILGLS 140 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC---------------CCCCHHHHHHHHHHc------CCCEEEEe
Confidence 345544333222333444444445677777653222 234455555544332 26777665
Q ss_pred ccCChhhHHHHHHHHHHHHhcCC--CceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhh
Q 024300 94 YIGSVSFLNTILQVVEKLRSINP--NLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (269)
Q Consensus 94 ~l~~~~~~~~i~~~l~~~k~~~~--~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~ 164 (269)
.... .....+.++++.+++..+ +++|++=-.. +.++. .+.+ .+|....|-.++-.+.
T Consensus 141 ~~~~-~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~-------~~~~~----~~~~--GaD~~~~da~~av~~~ 199 (201)
T cd02070 141 ALMT-TTMGGMKEVIEALKEAGLRDKVKVMVGGAP-------VNQEF----ADEI--GADGYAEDAAEAVAIA 199 (201)
T ss_pred cccc-ccHHHHHHHHHHHHHCCCCcCCeEEEECCc-------CCHHH----HHHc--CCcEEECCHHHHHHHH
Confidence 5332 345667888888888754 5666654211 22232 2212 7888888888776653
No 99
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=66.81 E-value=51 Score=27.12 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=24.7
Q ss_pred ccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccc
Q 024300 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG 127 (269)
Q Consensus 87 ~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~ 127 (269)
.+++++|+. -....-.++++.+++. +.+|++|--..
T Consensus 24 v~~iKvg~~---l~~~~g~~~i~~l~~~--~~~i~~DlK~~ 59 (216)
T cd04725 24 VCAVKVGLE---LFEAAGPEIVKELREL--GFLVFLDLKLG 59 (216)
T ss_pred ccEEEECHH---HHHhcCHHHHHHHHHC--CCcEEEEeecC
Confidence 567899972 2223445677888887 78999997544
No 100
>PLN02891 IMP cyclohydrolase
Probab=56.95 E-value=53 Score=31.02 Aligned_cols=116 Identities=14% Similarity=0.164 Sum_probs=59.3
Q ss_pred ccccCCCCCCCcEEEEecccccCcccc-----------cc---chHHHHhcCCceeeeceEEeecCCCCCCcc-ee----
Q 024300 5 ILSLALPSETGRVLSIQSHTVQGYVGN-----------KS---AVFPLQLLGYDVDPIHSVQFSNHTGYPTFK-GQ---- 65 (269)
Q Consensus 5 ~~~~~~~~~~~~vl~i~g~~~~g~~G~-----------~a---~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~-~~---- 65 (269)
--++.++++-.+--.|.=+|-+|-+-. .+ ..+.|+..|+.+..+. +-||++++. |.
T Consensus 12 ~~~~~~~~~~~krALISVsDKtgi~~fAk~L~~~gveIiSTgGTak~L~e~Gi~v~~Vs-----d~TgfPEiL~GRVKTL 86 (547)
T PLN02891 12 AQPQSSPSSGKKQALISLSDKTDLALLANGLQELGYTIVSTGGTASALEAAGVSVTKVE-----ELTNFPEMLDGRVKTL 86 (547)
T ss_pred ccccCCCCccccEEEEEEecccCHHHHHHHHHHCCCEEEEcchHHHHHHHcCCceeeHH-----hccCCchhhCCccccc
Confidence 345566666666555655554443211 00 2334566666554443 456666642 11
Q ss_pred -------ecCHHHHHHHHHHHHhCCCccccEEEEcccCChhh--------HHHHH-------HHHHHHHhcCCCceEEEc
Q 024300 66 -------VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSF--------LNTIL-------QVVEKLRSINPNLIYVCD 123 (269)
Q Consensus 66 -------~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~--------~~~i~-------~~l~~~k~~~~~~~vv~D 123 (269)
-|-..+-+..++.+++..+-.+|.|.+.+-|=.+. .+.+. .+++.+.+++..+.|++|
T Consensus 87 HPkIhgGILa~r~~~~h~~~l~~~~I~~IDlVvVNLYPF~~tv~~~~~~~ee~IEnIDIGGpsmlRAAAKN~~~V~Vv~d 166 (547)
T PLN02891 87 HPAVHGGILARRDQEHHMEALNEHGIGTIDVVVVNLYPFYDTVTSGGISFEDGVENIDIGGPAMIRAAAKNHKDVLVVVD 166 (547)
T ss_pred CchhhhhhhcCCCCHHHHHHHHHcCCCceeeEEEeccChHHHHhcCCCCHHHHHHhccCCcHHHHHHHHhCCCCeEEECC
Confidence 12112223344456666665678777776542211 11111 345555566668999999
Q ss_pred cc
Q 024300 124 PV 125 (269)
Q Consensus 124 p~ 125 (269)
|.
T Consensus 167 P~ 168 (547)
T PLN02891 167 PA 168 (547)
T ss_pred HH
Confidence 94
No 101
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=56.19 E-value=84 Score=25.85 Aligned_cols=123 Identities=9% Similarity=0.040 Sum_probs=62.5
Q ss_pred CCCcEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEE
Q 024300 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT 92 (269)
Q Consensus 13 ~~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 92 (269)
+.++|+.-.--.=..-+|..-....|+..|+++..+- .+++.+++.+..... .+++|.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG---------------~~vp~e~~v~~~~~~------~~~~V~l 145 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLG---------------VMVPIEKILEAAKEH------KADIIGL 145 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECC---------------CCCCHHHHHHHHHHc------CCCEEEE
Confidence 4455554333323333444333445677777655443 234455555544333 2677766
Q ss_pred cccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhh
Q 024300 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (269)
Q Consensus 93 G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~ 164 (269)
..+.. .....+.++++.+++..++++|++=-.+ .++++.+.....-.-.+|....|-.|+-.+.
T Consensus 146 S~~~~-~~~~~~~~~i~~L~~~~~~~~i~vGG~~-------~~~~~~~~~~~~~~~gad~y~~da~~~v~~~ 209 (213)
T cd02069 146 SGLLV-PSLDEMVEVAEEMNRRGIKIPLLIGGAA-------TSRKHTAVKIAPEYDGPVVYVKDASRALGVA 209 (213)
T ss_pred ccchh-ccHHHHHHHHHHHHhcCCCCeEEEEChh-------cCHHHHhhhhccccCCCceEecCHHHHHHHH
Confidence 55433 3456677888888876445555543211 2333322110000126788888877776553
No 102
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=55.03 E-value=1.7e+02 Score=26.76 Aligned_cols=112 Identities=12% Similarity=0.065 Sum_probs=54.7
Q ss_pred ceeecCHHHHHH-HHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEc-cccccCCCccCChhhHH
Q 024300 63 KGQVLNGQQLCD-LIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCD-PVMGDEGKLYVPSELVS 140 (269)
Q Consensus 63 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~D-p~~~~~~~~~~~~~~~~ 140 (269)
.+..++.+++-+ +.+++.-..- ..+.|.+.-.........+.++++.+|++ ++++.++ .+ +..+.+++..+
T Consensus 50 ~g~~~t~~evl~ev~~d~~~~~~-~~ggVtisGGGepl~~~~l~eLl~~lk~~--gi~taI~~Tn----G~~l~~~e~~~ 122 (404)
T TIGR03278 50 NGDFIPPQVVLGEVQTSLGFRTG-RDTKVTISGGGDVSCYPELEELTKGLSDL--GLPIHLGYTS----GKGFDDPEIAE 122 (404)
T ss_pred cCCcCCHHHHHHHHHHHHHHhcC-CCCEEEEECCcccccCHHHHHHHHHHHhC--CCCEEEeCCC----CcccCCHHHHH
Confidence 344455554444 3343432110 12444333222233456678899999987 7787775 42 22334555555
Q ss_pred HHHHhccC--CCcEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 024300 141 VYREKVVP--VASMLTPNQFEAEQLTGFRIGSEADGREACKILHA 183 (269)
Q Consensus 141 ~~~~~ll~--~~dii~pN~~E~~~l~g~~~~~~~~~~~a~~~l~~ 183 (269)
.+.+.-+. +.++=..|.+-...++|.+. .+.+.+.++.|.+
T Consensus 123 ~L~~~gld~v~iSvka~dpe~h~kl~G~~~--a~~ILe~L~~L~e 165 (404)
T TIGR03278 123 FLIDNGVREVSFTVFATDPELRREWMKDPT--PEASLQCLRRFCE 165 (404)
T ss_pred HHHHcCCCEEEEecccCCHHHHHHHhCCCC--HHHHHHHHHHHHh
Confidence 44331011 22333556666677777531 1344455555554
No 103
>TIGR03419 NifU_clost FeS cluster assembly scaffold protein NifU, Clostridium type. NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not.
Probab=52.59 E-value=28 Score=25.86 Aligned_cols=42 Identities=21% Similarity=0.076 Sum_probs=31.2
Q ss_pred CCCCchHHHH---HHHHHhhccCCCCHHHHHHHHHHHHHHHhhcCC
Q 024300 227 YFTGTGDLMT---ALLLGWSNKYRDNLDIAAELAVSSLQVLLLLMP 269 (269)
Q Consensus 227 dt~GaGDaf~---a~~~~~l~~~g~~~~~a~~~A~~~~~~~l~~~~ 269 (269)
...|-||+.+ +.+++-++. |+++.++...........|+.+|
T Consensus 51 ~f~~~GC~is~Asas~~~e~i~-Gk~l~ea~~i~~~~i~~~l~~l~ 95 (121)
T TIGR03419 51 KFKTFGCGAAIASSSMATEMIK-GKTLEEAWELTNKAVAEALDGLP 95 (121)
T ss_pred EEEEeccHHHHHHHHHHHHHHc-CCCHHHHHHhhhHHHHHHHcCCC
Confidence 4456677765 677778888 99999999988776666666544
No 104
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=51.37 E-value=84 Score=26.06 Aligned_cols=84 Identities=20% Similarity=0.248 Sum_probs=50.7
Q ss_pred cEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCC-CCCcceeecCHHHHHHHHHHHHhCCCccccEEEEcc
Q 024300 16 RVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTG-YPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGY 94 (269)
Q Consensus 16 ~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~ 94 (269)
|-|.+-|.+..|..-.++ +..|-+.|++ ..=+.+ ..+| .+.+ +.++.+.++++.+.++- .| ++|.
T Consensus 73 RflilcG~Ev~GH~tGqs-l~aL~~NGvd-~~grIi---Ga~GaiPfl--eNi~~~aV~rFq~qVei-----vd--~i~~ 138 (225)
T PRK00964 73 RFLILCGSEVQGHITGQS-LKALHENGVD-DDGRII---GAKGAIPFL--ENVPDEAVERFQEQIEI-----VD--LIDT 138 (225)
T ss_pred eEEEEecCccCCccccHH-HHHHHHcCCC-CCCCCc---cCCCCCchh--hcCCHHHHHHHHhheEE-----Ee--eecC
Confidence 446677777777766655 5567777886 111111 2223 2222 56788888887766541 12 2333
Q ss_pred cCChhhHHHHHHHHHHHHhcCCC
Q 024300 95 IGSVSFLNTILQVVEKLRSINPN 117 (269)
Q Consensus 95 l~~~~~~~~i~~~l~~~k~~~~~ 117 (269)
+..+.+...++.+..+.|+
T Consensus 139 ----eD~~~I~a~I~ec~~kdpg 157 (225)
T PRK00964 139 ----EDPGAITAKIKECIAKDPG 157 (225)
T ss_pred ----CCHHHHHHHHHHHHccCCC
Confidence 6678888999999887555
No 105
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=51.23 E-value=1.5e+02 Score=25.13 Aligned_cols=84 Identities=15% Similarity=0.086 Sum_probs=53.8
Q ss_pred ccEE-EEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEc-----CCHHHH
Q 024300 87 YTHL-LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLT-----PNQFEA 160 (269)
Q Consensus 87 ~~~i-~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~-----pN~~E~ 160 (269)
.++| .+|--| ..+.+.+.++++.+|+. ++++++|.|.. ..++..+. +++..|.+. ++++-.
T Consensus 84 ~~gvt~SGGEP-~~q~e~~~~~~~~ake~--Gl~~~l~TnG~------~~~~~~~~----l~~~~D~v~~DlK~~~~~~y 150 (260)
T COG1180 84 GGGVTFSGGEP-TLQAEFALDLLRAAKER--GLHVALDTNGF------LPPEALEE----LLPLLDAVLLDLKAFDDELY 150 (260)
T ss_pred CCEEEEECCcc-hhhHHHHHHHHHHHHHC--CCcEEEEcCCC------CCHHHHHH----HHhhcCeEEEeeccCChHHH
Confidence 4544 344433 35678899999999998 99999998654 33333322 455566543 444447
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCC
Q 024300 161 EQLTGFRIGSEADGREACKILHAAGP 186 (269)
Q Consensus 161 ~~l~g~~~~~~~~~~~a~~~l~~~g~ 186 (269)
..++|... +-+.+.++.+.+.|.
T Consensus 151 ~~~tg~~~---~~vl~~~~~l~~~g~ 173 (260)
T COG1180 151 RKLTGADN---EPVLENLELLADLGV 173 (260)
T ss_pred HHHhCCCc---HHHHHHHHHHHcCCC
Confidence 77777643 566677777777654
No 106
>PRK10867 signal recognition particle protein; Provisional
Probab=50.96 E-value=2.1e+02 Score=26.51 Aligned_cols=150 Identities=15% Similarity=0.124 Sum_probs=71.7
Q ss_pred CCCCCcEEEEecccccCcccccc-chHHHHhc-CCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCcccc
Q 024300 11 PSETGRVLSIQSHTVQGYVGNKS-AVFPLQLL-GYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYT 88 (269)
Q Consensus 11 ~~~~~~vl~i~g~~~~g~~G~~a-~~~~l~~~-Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (269)
....++++.+.|..+.|+--..+ ....+... |..+..+..+. +.. -..+++.... .... .+
T Consensus 96 ~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~------~R~-----aa~eQL~~~a---~~~g---v~ 158 (433)
T PRK10867 96 AAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV------YRP-----AAIEQLKTLG---EQIG---VP 158 (433)
T ss_pred cCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc------cch-----HHHHHHHHHH---hhcC---Ce
Confidence 34567899999877666633323 22235555 66666555443 110 0012222221 1111 23
Q ss_pred EEEEcccCChhhHHHHHHHHHHHHhcCCCc-eEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCC
Q 024300 89 HLLTGYIGSVSFLNTILQVVEKLRSINPNL-IYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR 167 (269)
Q Consensus 89 ~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~-~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~ 167 (269)
++..+.. ..+.+...++++.++.. +. .|++|...+.. .+++..+.+.+ ..+++.|++. ++=.+
T Consensus 159 v~~~~~~--~dp~~i~~~a~~~a~~~--~~DvVIIDTaGrl~----~d~~lm~eL~~----i~~~v~p~ev----llVld 222 (433)
T PRK10867 159 VFPSGDG--QDPVDIAKAALEEAKEN--GYDVVIVDTAGRLH----IDEELMDELKA----IKAAVNPDEI----LLVVD 222 (433)
T ss_pred EEecCCC--CCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcc----cCHHHHHHHHH----HHHhhCCCeE----EEEEe
Confidence 2332221 23345555677777654 33 78899866532 34444443332 2233334321 11111
Q ss_pred CCCHHHHHHHHHHHH-hcCCCeEEEEe
Q 024300 168 IGSEADGREACKILH-AAGPAKVVITS 193 (269)
Q Consensus 168 ~~~~~~~~~a~~~l~-~~g~~~Vvvt~ 193 (269)
..+.++..+.++.+. ..+...+++|.
T Consensus 223 a~~gq~av~~a~~F~~~~~i~giIlTK 249 (433)
T PRK10867 223 AMTGQDAVNTAKAFNEALGLTGVILTK 249 (433)
T ss_pred cccHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 112345666667776 45677888886
No 107
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=49.60 E-value=2.2e+02 Score=26.47 Aligned_cols=117 Identities=12% Similarity=0.128 Sum_probs=63.5
Q ss_pred ecCHHHHHHHHHHHHhCC------CccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhH
Q 024300 66 VLNGQQLCDLIEGLEANN------LLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELV 139 (269)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~------~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~ 139 (269)
.++.+.++..++.+.+.. .+..|.|.+|..+. ..+.+..+++.+++. .++|+++|. .+++.+
T Consensus 101 ~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--dp~~v~~~Vk~V~~~-~dvPLSIDT---------~dpevl 168 (450)
T PRK04165 101 TMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--DPEKFAKAVKKVAET-TDLPLILCS---------EDPAVL 168 (450)
T ss_pred CCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--CHHHHHHHHHHHHHh-cCCCEEEeC---------CCHHHH
Confidence 355677777766662211 22368888888654 345567777887763 278999995 233333
Q ss_pred HHHHHhcc-CCCcEEcCCHH---HHHHhh---CCCC----CCHHHHHHHHHHHHhcCCCeEEEEee
Q 024300 140 SVYREKVV-PVASMLTPNQF---EAEQLT---GFRI----GSEADGREACKILHAAGPAKVVITSI 194 (269)
Q Consensus 140 ~~~~~~ll-~~~dii~pN~~---E~~~l~---g~~~----~~~~~~~~a~~~l~~~g~~~Vvvt~g 194 (269)
+.-.+... ...++...|.+ ++..+. |... .+.+.+++....+.+.|.+.+++=-+
T Consensus 169 eaAleagad~~plI~Sat~dN~~~m~~la~~yg~pvVv~~~dl~~L~~lv~~~~~~GI~dIILDPg 234 (450)
T PRK04165 169 KAALEVVADRKPLLYAATKENYEEMAELAKEYNCPLVVKAPNLEELKELVEKLQAAGIKDLVLDPG 234 (450)
T ss_pred HHHHHhcCCCCceEEecCcchHHHHHHHHHHcCCcEEEEchhHHHHHHHHHHHHHcCCCcEEECCC
Confidence 22211111 13345554533 332222 2111 12355666677777788877776543
No 108
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=49.49 E-value=1.1e+02 Score=28.30 Aligned_cols=74 Identities=20% Similarity=0.108 Sum_probs=44.9
Q ss_pred cccE-EEEcccCC-------hhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCH
Q 024300 86 YYTH-LLTGYIGS-------VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQ 157 (269)
Q Consensus 86 ~~~~-i~~G~l~~-------~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~ 157 (269)
++|+ |++|+-.- ....+.+.++.+.++...+++++-|.-... .+++..+.+.+.++|++|-+=.|+
T Consensus 205 ~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As~------~d~~l~~~i~~~ilp~VDSlGmNE 278 (445)
T cd01938 205 QPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELAST------VDEELREEILHEVVPYVDSLGLNE 278 (445)
T ss_pred CCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEeccc------ccHHHHHHHHHHhcccccccccCH
Confidence 3674 66775421 112233334444444333356777774322 455666666656999999999999
Q ss_pred HHHHHhhC
Q 024300 158 FEAEQLTG 165 (269)
Q Consensus 158 ~E~~~l~g 165 (269)
.|+..|+.
T Consensus 279 qEL~~l~~ 286 (445)
T cd01938 279 QELANLLQ 286 (445)
T ss_pred HHHHHHHH
Confidence 99998863
No 109
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=46.55 E-value=46 Score=28.11 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=37.3
Q ss_pred CCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEEcccCCh-hhHHHHHHHHHHHHhcCCCceEEEc
Q 024300 57 TGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSV-SFLNTILQVVEKLRSINPNLIYVCD 123 (269)
Q Consensus 57 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~-~~~~~i~~~l~~~k~~~~~~~vv~D 123 (269)
+|.+.+...-+....++++++.... +.|.+++|...+. .+.+.+.+.++.++++ ++.+..-
T Consensus 12 ~GlT~v~Dkglg~~~~~dlLe~ag~----yID~~K~g~Gt~~l~~~~~l~eki~l~~~~--gV~v~~G 73 (244)
T PF02679_consen 12 RGLTMVIDKGLGLRYLEDLLESAGD----YIDFLKFGWGTSALYPEEILKEKIDLAHSH--GVYVYPG 73 (244)
T ss_dssp SS-EEEEESS--HHHHHHHHHHHGG----G-SEEEE-TTGGGGSTCHHHHHHHHHHHCT--T-EEEE-
T ss_pred CCcEEEecCCCCHHHHHHHHHHhhh----hccEEEecCceeeecCHHHHHHHHHHHHHc--CCeEeCC
Confidence 4444443333667888888876664 5789999965432 2356788899999998 8888765
No 110
>COG4381 Mu-like prophage protein gp46 [Function unknown]
Probab=46.14 E-value=20 Score=26.67 Aligned_cols=35 Identities=20% Similarity=0.086 Sum_probs=30.6
Q ss_pred hHHH----HHHHHHhhccCCCCHHHHHHHHHHHHHHHhhc
Q 024300 232 GDLM----TALLLGWSNKYRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 232 GDaf----~a~~~~~l~~~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
||+| .|.-++-|.+ .+.+.+....|..|+.++|+.
T Consensus 50 gDs~~~~~~GSrLwlL~R-eK~l~~V~~~Ae~YA~eALqw 88 (135)
T COG4381 50 GDSTAASALGSRLWLLRR-EKDLQRVSLLAEQYADEALQW 88 (135)
T ss_pred cccccccchhhHHHHHHH-hhhhHHHHHHHHHHHHHHHHH
Confidence 5666 7888889988 899999999999999999875
No 111
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=45.61 E-value=1.8e+02 Score=24.36 Aligned_cols=121 Identities=14% Similarity=0.170 Sum_probs=69.6
Q ss_pred cCHHHHHHHHHHHHhCCCccccEEEEcccC----ChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHH
Q 024300 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIG----SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVY 142 (269)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~----~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~ 142 (269)
+++ +++.+++.+.+..+ +-+++.+|-++ +.+..+....-++.+++. ++|+++-. |+.+. .-..+..++.+
T Consensus 77 iP~-e~~~~l~~L~~~l~-~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~--dvPviVHT-Pr~nK-~e~t~~ildi~ 150 (254)
T COG1099 77 IPP-ELEEVLEELEELLS-NEDVVAIGEIGLEEATDEEKEVFREQLELAREL--DVPVIVHT-PRRNK-KEATSKILDIL 150 (254)
T ss_pred CCc-hHHHHHHHHHhhcc-cCCeeEeeecccccCCHHHHHHHHHHHHHHHHc--CCcEEEeC-CCCcc-hhHHHHHHHHH
Confidence 443 47777777776544 45677888664 344456677778889998 99999885 33211 01223333333
Q ss_pred HHhccCCCcEE--cCCHHHHHHhhCCCC-------CCHHHHHHHHHHHHhcCCCeEEEEe
Q 024300 143 REKVVPVASML--TPNQFEAEQLTGFRI-------GSEADGREACKILHAAGPAKVVITS 193 (269)
Q Consensus 143 ~~~ll~~~dii--~pN~~E~~~l~g~~~-------~~~~~~~~a~~~l~~~g~~~Vvvt~ 193 (269)
.+.-++-..++ -.|.+-...+++.+. ...-+..++++...+.|...+++..
T Consensus 151 ~~~~l~~~lvvIDH~N~etv~~vld~e~~vGlTvqPgKlt~~eAveIV~ey~~~r~ilnS 210 (254)
T COG1099 151 IESGLKPSLVVIDHVNEETVDEVLDEEFYVGLTVQPGKLTVEEAVEIVREYGAERIILNS 210 (254)
T ss_pred HHcCCChhheehhcccHHHHHHHHhccceEEEEecCCcCCHHHHHHHHHHhCcceEEEec
Confidence 33223322333 356666665655432 1233566777777777777777765
No 112
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=45.60 E-value=79 Score=24.94 Aligned_cols=50 Identities=8% Similarity=0.107 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEc
Q 024300 68 NGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCD 123 (269)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~D 123 (269)
+++.++++.+++.+ .|+|...++..++..+.+...++..+++. .+.+++.
T Consensus 44 ~~~~~~~~~~aia~-----ADii~~smlF~ed~v~~l~~~L~~~r~~~-~a~i~~~ 93 (164)
T PF11965_consen 44 DPEALEECEAAIAR-----ADIIFGSMLFIEDHVRPLLPALEARRDHC-PAMIIFE 93 (164)
T ss_pred ChHHHHHHHHHHHh-----CCEEEeehhhhHHHHHHHHHHHHHHHccC-CEEEEEc
Confidence 35667888888886 45577778888888888888888776542 3444444
No 113
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=44.56 E-value=1.1e+02 Score=25.06 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCCCccccEEEEc-ccCChhhHHHHHHHHHHHHhcCCCceEEEcccc
Q 024300 70 QQLCDLIEGLEANNLLYYTHLLTG-YIGSVSFLNTILQVVEKLRSINPNLIYVCDPVM 126 (269)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~i~~G-~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~ 126 (269)
+++.++.+.+.+. ..|+|.+| +. ....+.+.++++.+|++ .++|+++-|..
T Consensus 11 e~~~~ia~~v~~~---gtDaI~VGGS~--gvt~~~~~~~v~~ik~~-~~lPvilfp~~ 62 (205)
T TIGR01769 11 DEIEKIAKNAKDA---GTDAIMVGGSL--GIVESNLDQTVKKIKKI-TNLPVILFPGN 62 (205)
T ss_pred HHHHHHHHHHHhc---CCCEEEEcCcC--CCCHHHHHHHHHHHHhh-cCCCEEEECCC
Confidence 3444444555543 25888886 42 23445566777788773 27899988743
No 114
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=44.55 E-value=1.5e+02 Score=24.59 Aligned_cols=84 Identities=24% Similarity=0.290 Sum_probs=48.8
Q ss_pred cEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCC-CCCcceeecCHHHHHHHHHHHHhCCCccccEEEEcc
Q 024300 16 RVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTG-YPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGY 94 (269)
Q Consensus 16 ~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~ 94 (269)
|-|.+-|.+..|..-.++ +..|-+.|++-. =+ +. ..+| .+.+ +.++.+.++++.+.++- .| ++|.
T Consensus 73 RflilcG~Ev~GHltGqs-L~aLh~NGi~e~-gr-Ii--Ga~GaiPfl--eNi~~~aVerFq~qVei-----Vd--lI~~ 138 (238)
T TIGR01111 73 RFLILCGSEVQGHITGQS-FKALHENGVDDD-GR-II--GALGAIPYL--ENINEEAVERFQEQIEV-----VN--LIDV 138 (238)
T ss_pred eEEEEecCcccCccccHH-HHHHHHcCCCCC-Cc-Ee--cCCCCCchh--hcCCHHHHHHHHhheEE-----Ee--eecC
Confidence 345667777766666555 556667777611 11 11 2223 2222 56777888877665531 22 2233
Q ss_pred cCChhhHHHHHHHHHHHHhcCCC
Q 024300 95 IGSVSFLNTILQVVEKLRSINPN 117 (269)
Q Consensus 95 l~~~~~~~~i~~~l~~~k~~~~~ 117 (269)
+..+.+...++.|.++.|+
T Consensus 139 ----eD~~~I~~~I~ec~~kdpG 157 (238)
T TIGR01111 139 ----EDMGAITSKVKECASKDPG 157 (238)
T ss_pred ----CCHHHHHHHHHHHHhcCCC
Confidence 6678888899999876554
No 115
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=44.51 E-value=89 Score=22.61 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=22.9
Q ss_pred ccEEEEcccCChhhHHHHHHHHHHHHhcCC-CceEEEc
Q 024300 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINP-NLIYVCD 123 (269)
Q Consensus 87 ~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~-~~~vv~D 123 (269)
+++|.+.... ......+.++++.+|+..+ ++++++=
T Consensus 51 pdvV~iS~~~-~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 51 ADAIGLSGLL-TTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred CCEEEEeccc-cccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 6766665432 3455667888888888755 5565554
No 116
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=44.47 E-value=80 Score=28.48 Aligned_cols=88 Identities=18% Similarity=0.161 Sum_probs=47.0
Q ss_pred ecCHHHHHHHHHHHHhCCCccc-cEEEEccc-CChhhHHHHHHHHHHHHhcCCCceEEEcccccc--------CCCccCC
Q 024300 66 VLNGQQLCDLIEGLEANNLLYY-THLLTGYI-GSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD--------EGKLYVP 135 (269)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~G~l-~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~--------~~~~~~~ 135 (269)
+++.+-++++++.+...++-+. ..|...+. ..+.+...+.+.-+.++++ ++|+++|..-.. ....|-+
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky--~ipvv~Da~RfaENaYFIk~rE~gYrd 245 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKY--DIPVVMDAARFAENAYFIKQREPGYRD 245 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHc--CCcEEeehhhhhhhhhhhhhcCccccc
Confidence 3555666777766655443221 12222221 2334456667777788888 999999963210 1112222
Q ss_pred hhhHHHHHHhccCCCcEEcCC
Q 024300 136 SELVSVYREKVVPVASMLTPN 156 (269)
Q Consensus 136 ~~~~~~~~~~ll~~~dii~pN 156 (269)
....+..++ .++++|-++.+
T Consensus 246 ~sI~~IarE-m~sYaD~~~mS 265 (471)
T COG3033 246 WSIEEIARE-MYSYADGCTMS 265 (471)
T ss_pred ccHHHHHHH-HHhhhhhheee
Confidence 233444444 78888866544
No 117
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=42.78 E-value=2e+02 Score=27.70 Aligned_cols=116 Identities=13% Similarity=0.106 Sum_probs=62.7
Q ss_pred cCccccccchHHHHhcCCceeeeceEEe--e--cCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhH
Q 024300 26 QGYVGNKSAVFPLQLLGYDVDPIHSVQF--S--NHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFL 101 (269)
Q Consensus 26 ~g~~G~~a~~~~l~~~Gv~~~~i~~~~~--~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~ 101 (269)
+|.+|. ...+.|++.|+++..+..+.. . ...|+..++|+.-+++.+++. .++ +++++.+-. ++ .
T Consensus 408 ~Gr~G~-~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~a--gi~-----~A~~vv~~~-~d---~ 475 (601)
T PRK03659 408 FGRFGQ-VIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAA--GAE-----KAEAIVITC-NE---P 475 (601)
T ss_pred CchHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhc--CCc-----cCCEEEEEe-CC---H
Confidence 455554 356778899998877754421 0 123444456654443333221 233 356555433 22 2
Q ss_pred HHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhC
Q 024300 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (269)
Q Consensus 102 ~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g 165 (269)
+....++..+|+.+|+.+++.=. .+++..+.+++ -.+|.+.|-..|....++
T Consensus 476 ~~n~~i~~~~r~~~p~~~IiaRa---------~~~~~~~~L~~---~Ga~~vv~e~~es~l~l~ 527 (601)
T PRK03659 476 EDTMKIVELCQQHFPHLHILARA---------RGRVEAHELLQ---AGVTQFSRETFSSALELG 527 (601)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEe---------CCHHHHHHHHh---CCCCEEEccHHHHHHHHH
Confidence 33344566677777787877643 22233333332 378998888877765544
No 118
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=42.68 E-value=35 Score=25.77 Aligned_cols=39 Identities=21% Similarity=0.113 Sum_probs=30.8
Q ss_pred CCCCchHHHH-HHHHHhhccCCCCHHHHHHHHHHHHHHHhh
Q 024300 227 YFTGTGDLMT-ALLLGWSNKYRDNLDIAAELAVSSLQVLLL 266 (269)
Q Consensus 227 dt~GaGDaf~-a~~~~~l~~~g~~~~~a~~~A~~~~~~~l~ 266 (269)
.|.|.|-+.+ +.++.-|.+ |++++|+++.-|.=++.-|.
T Consensus 85 KTFGCGSAIASSS~aTewvk-gkt~dea~kIkNteIAKeL~ 124 (157)
T KOG3361|consen 85 KTFGCGSAIASSSLATEWVK-GKTLDEALKIKNTEIAKELS 124 (157)
T ss_pred eecccchHhhhhHHHHHHHc-cccHHHHHhcccHHHHHhcc
Confidence 5789999887 477788998 99999999887766555443
No 119
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=41.71 E-value=89 Score=26.02 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=25.4
Q ss_pred ccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccc
Q 024300 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPV 125 (269)
Q Consensus 87 ~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~ 125 (269)
.|+|++|-- .....+.+.++++.+|+. .+|+++-|.
T Consensus 28 tdai~vGGS-~~vt~~~~~~~v~~ik~~--~lPvilfp~ 63 (223)
T TIGR01768 28 TDAILIGGS-QGVTYEKTDTLIEALRRY--GLPIILFPS 63 (223)
T ss_pred CCEEEEcCC-CcccHHHHHHHHHHHhcc--CCCEEEeCC
Confidence 588877742 123445677788888887 799999883
No 120
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=41.17 E-value=91 Score=26.12 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=26.4
Q ss_pred ccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccc
Q 024300 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG 127 (269)
Q Consensus 87 ~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~ 127 (269)
.|+|++|-- .....+.+.++++.+|++ .++|+++-|...
T Consensus 42 TDaImIGGS-~gvt~~~~~~~v~~ik~~-~~lPvilfP~~~ 80 (240)
T COG1646 42 TDAIMIGGS-DGVTEENVDNVVEAIKER-TDLPVILFPGSP 80 (240)
T ss_pred CCEEEECCc-ccccHHHHHHHHHHHHhh-cCCCEEEecCCh
Confidence 688888742 223345577788888843 389999999543
No 121
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=39.97 E-value=1.1e+02 Score=27.52 Aligned_cols=86 Identities=21% Similarity=0.161 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhCCCccccE-EEEcccC----ChhhHH-HHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHH
Q 024300 71 QLCDLIEGLEANNLLYYTH-LLTGYIG----SVSFLN-TILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (269)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~-i~~G~l~----~~~~~~-~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~ 144 (269)
.++.+.+.++. +.+|. |.+|.-. +.+..+ .+.++.+.+-+.-+++|+=|+.... .+.+....+..
T Consensus 226 ~~E~f~~Al~~---fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS~------~~~~l~~~i~h 296 (478)
T KOG4184|consen 226 AVEQFTDALKM---FQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELASM------TNRELMSSIVH 296 (478)
T ss_pred HHHHHHHHHHH---hCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhHH------HHHHHHHHHHH
Confidence 34445555553 34674 5666421 222222 2333334443333456666664322 23444444555
Q ss_pred hccCCCcEEcCCHHHHHHhhC
Q 024300 145 KVVPVASMLTPNQFEAEQLTG 165 (269)
Q Consensus 145 ~ll~~~dii~pN~~E~~~l~g 165 (269)
.++|++|=+=.|+.|+..|..
T Consensus 297 ~VlPyVdSLGlNEQEL~fL~q 317 (478)
T KOG4184|consen 297 QVLPYVDSLGLNEQELLFLTQ 317 (478)
T ss_pred HhhhhccccCCCHHHHHHHHH
Confidence 699999999999999999864
No 122
>TIGR03586 PseI pseudaminic acid synthase.
Probab=39.96 E-value=1.8e+02 Score=25.75 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCH------HHHHHh--hCCC------
Q 024300 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQ------FEAEQL--TGFR------ 167 (269)
Q Consensus 102 ~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~------~E~~~l--~g~~------ 167 (269)
+...++.+.+++. |++++..| ++.+..+.+.+ + .+++++.-- .=++.+ +|.+
T Consensus 77 e~~~~L~~~~~~~--Gi~~~stp---------fd~~svd~l~~-~--~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG 142 (327)
T TIGR03586 77 EWHKELFERAKEL--GLTIFSSP---------FDETAVDFLES-L--DVPAYKIASFEITDLPLIRYVAKTGKPIIMSTG 142 (327)
T ss_pred HHHHHHHHHHHHh--CCcEEEcc---------CCHHHHHHHHH-c--CCCEEEECCccccCHHHHHHHHhcCCcEEEECC
Confidence 4455667788887 99998888 44455554433 2 255554322 222222 1222
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEEe
Q 024300 168 IGSEADGREACKILHAAGPAKVVITS 193 (269)
Q Consensus 168 ~~~~~~~~~a~~~l~~~g~~~Vvvt~ 193 (269)
..+.++++.++..+.+.|...|++-.
T Consensus 143 ~~t~~Ei~~Av~~i~~~g~~~i~Llh 168 (327)
T TIGR03586 143 IATLEEIQEAVEACREAGCKDLVLLK 168 (327)
T ss_pred CCCHHHHHHHHHHHHHCCCCcEEEEe
Confidence 25789999999999888876666644
No 123
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=39.76 E-value=2e+02 Score=23.18 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=46.0
Q ss_pred CCcEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEEc
Q 024300 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTG 93 (269)
Q Consensus 14 ~~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G 93 (269)
-++|+...--.=..-+|..-....|+..|+++.++- ..++.+++.+.++.. .+|+|.+.
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG---------------~~vp~e~~v~~~~~~------~pd~v~lS 142 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLG---------------RDVPIDTVVEKVKKE------KPLMLTGS 142 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECC---------------CCCCHHHHHHHHHHc------CCCEEEEc
Confidence 345544433333444555444556677777655443 234445555544333 26777665
Q ss_pred ccCChhhHHHHHHHHHHHHhc--CCCceEEEc
Q 024300 94 YIGSVSFLNTILQVVEKLRSI--NPNLIYVCD 123 (269)
Q Consensus 94 ~l~~~~~~~~i~~~l~~~k~~--~~~~~vv~D 123 (269)
.... .....+.++++.+++. .++++|++=
T Consensus 143 ~~~~-~~~~~~~~~i~~l~~~~~~~~v~i~vG 173 (197)
T TIGR02370 143 ALMT-TTMYGQKDINDKLKEEGYRDSVKFMVG 173 (197)
T ss_pred cccc-cCHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 5432 3345567788888776 123455543
No 124
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=39.36 E-value=1.6e+02 Score=24.79 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcC------CHHHHHHh--hCCC-----
Q 024300 101 LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTP------NQFEAEQL--TGFR----- 167 (269)
Q Consensus 101 ~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~p------N~~E~~~l--~g~~----- 167 (269)
.+...++.+.++++ |+.++..| ++.+.++.+.+ + .++.++. |..=++.+ +|.+
T Consensus 55 ~e~~~~L~~~~~~~--gi~f~stp---------fd~~s~d~l~~-~--~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlST 120 (241)
T PF03102_consen 55 EEQHKELFEYCKEL--GIDFFSTP---------FDEESVDFLEE-L--GVPAYKIASGDLTNLPLLEYIAKTGKPVILST 120 (241)
T ss_dssp HHHHHHHHHHHHHT--T-EEEEEE----------SHHHHHHHHH-H--T-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-
T ss_pred HHHHHHHHHHHHHc--CCEEEECC---------CCHHHHHHHHH-c--CCCEEEeccccccCHHHHHHHHHhCCcEEEEC
Confidence 44556677888888 88888777 44555555543 2 3444432 22222222 2333
Q ss_pred -CCCHHHHHHHHHHHHhcCCCeEEEE
Q 024300 168 -IGSEADGREACKILHAAGPAKVVIT 192 (269)
Q Consensus 168 -~~~~~~~~~a~~~l~~~g~~~Vvvt 192 (269)
..+.++++++++.+.+.+...+++-
T Consensus 121 G~stl~EI~~Av~~~~~~~~~~l~ll 146 (241)
T PF03102_consen 121 GMSTLEEIERAVEVLREAGNEDLVLL 146 (241)
T ss_dssp TT--HHHHHHHHHHHHHHCT--EEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 2567899999999966665554443
No 125
>PTZ00413 lipoate synthase; Provisional
Probab=39.26 E-value=90 Score=28.31 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=21.1
Q ss_pred cccEEEEcccCChhhHHHHHHHHHHHHhcCCCceE
Q 024300 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIY 120 (269)
Q Consensus 86 ~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~v 120 (269)
.++++++|+ ++..+.+.++++.+++. ++-+
T Consensus 297 tcSGiIVGL---GET~eEvie~m~dLrel--GVDi 326 (398)
T PTZ00413 297 TKSSIMLGL---GETEEEVRQTLRDLRTA--GVSA 326 (398)
T ss_pred EeeeeEecC---CCCHHHHHHHHHHHHHc--CCcE
Confidence 355677775 45666678888999887 6543
No 126
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=38.99 E-value=36 Score=24.51 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=25.8
Q ss_pred CCCCCchHHHHHHHHHhhccCC-CCHHHHHHHH
Q 024300 226 AYFTGTGDLMTALLLGWSNKYR-DNLDIAAELA 257 (269)
Q Consensus 226 ~dt~GaGDaf~a~~~~~l~~~g-~~~~~a~~~A 257 (269)
+|-+|-||.--|.|++++.+ | .+.+||+..-
T Consensus 53 ~dkh~kGd~aEA~iAyAWLe-g~it~eEaveil 84 (120)
T PF11469_consen 53 TDKHGKGDIAEALIAYAWLE-GKITIEEAVEIL 84 (120)
T ss_dssp GGCCGHHHHHHHHHHHHHHT-TSS-HHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHh-ccccHHHHHHHH
Confidence 58899999999999999998 6 5788887753
No 127
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=38.97 E-value=2.3e+02 Score=24.30 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=31.5
Q ss_pred EEEcccCChhhHHHHHHHHHHHHhcCCCceEEEcccccc
Q 024300 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD 128 (269)
Q Consensus 90 i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~ 128 (269)
|.+|+....+..+.+.++.+.|+++ +.|++.-+-++.
T Consensus 118 Vy~Gse~e~~~i~~~~~v~~~a~~~--Gmp~v~~~YpRg 154 (265)
T COG1830 118 VYVGSETEREMIENISQVVEDAHEL--GMPLVAWAYPRG 154 (265)
T ss_pred EecCCcchHHHHHHHHHHHHHHHHc--CCceEEEEeccC
Confidence 6778877777888899999999999 999999887773
No 128
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=38.93 E-value=2.5e+02 Score=24.35 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=27.3
Q ss_pred HHHHHHHhCC--CccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEE
Q 024300 74 DLIEGLEANN--LLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYV 121 (269)
Q Consensus 74 ~~~~~~~~~~--~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv 121 (269)
.+++..++.. ++.=+++++|+ ++..+.+.+.++.++++ ++-++
T Consensus 201 ~~L~~~k~~~P~i~TKSgiMlGL---GEt~~Ev~e~m~DLr~~--gvdil 245 (306)
T COG0320 201 SLLERAKELGPDIPTKSGLMVGL---GETDEEVIEVMDDLRSA--GVDIL 245 (306)
T ss_pred HHHHHHHHhCCCcccccceeeec---CCcHHHHHHHHHHHHHc--CCCEE
Confidence 4455555533 22234577776 46677788899999988 75543
No 129
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=38.20 E-value=91 Score=25.19 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=12.6
Q ss_pred HHHHHHhcCCCceEEEcc
Q 024300 107 VVEKLRSINPNLIYVCDP 124 (269)
Q Consensus 107 ~l~~~k~~~~~~~vv~Dp 124 (269)
+++.+.+++..+.|+.||
T Consensus 127 mlRaAAKN~~~V~vv~dp 144 (187)
T cd01421 127 LLRAAAKNYKDVTVLVDP 144 (187)
T ss_pred HHHHHHhcCCCeEEEcCH
Confidence 455555555678999998
No 130
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=38.17 E-value=1.9e+02 Score=22.97 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=46.6
Q ss_pred EEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCC-CCCcceeecCHHHHHHHHHHHHhCCCccccEEEEccc
Q 024300 17 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTG-YPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYI 95 (269)
Q Consensus 17 vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l 95 (269)
-|.+-|.+..|..-.++ +..|.+.|++-.. . +. ..+| .+.+ +.++.+.++++.+.++- .| ++|.
T Consensus 70 flilcG~Ev~GH~~Gqs-l~aLh~NGid~~g-r-Ii--Ga~GaiPfl--eNi~~~aV~rFq~qVel-----Vd--~ig~- 134 (176)
T PF04208_consen 70 FLILCGSEVKGHLTGQS-LLALHENGIDEDG-R-II--GAKGAIPFL--ENIPREAVERFQQQVEL-----VD--MIGE- 134 (176)
T ss_pred EEEEecCccCCCcchHH-HHHHHHcCCCCCC-C-Cc--cCCCCcchh--hcCCHHHHHHHHHheEE-----Ee--eecC-
Confidence 35566666666655544 5566677775432 1 11 1222 2222 46777888877655441 12 2333
Q ss_pred CChhhHHHHHHHHHHHHhcCC
Q 024300 96 GSVSFLNTILQVVEKLRSINP 116 (269)
Q Consensus 96 ~~~~~~~~i~~~l~~~k~~~~ 116 (269)
+..+.+...++.+.++.|
T Consensus 135 ---eD~~~I~~~I~e~~~kdp 152 (176)
T PF04208_consen 135 ---EDPEAIQAKIKECISKDP 152 (176)
T ss_pred ---CCHHHHHHHHHHHHhcCC
Confidence 667888888999977643
No 131
>PRK08508 biotin synthase; Provisional
Probab=37.73 E-value=2.6e+02 Score=23.91 Aligned_cols=110 Identities=13% Similarity=0.072 Sum_probs=57.6
Q ss_pred cCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhc
Q 024300 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKV 146 (269)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~l 146 (269)
++++++.+......+.....+..+..|...+....+.+.++++.+|++.|++.+..-. + +..++.++.+++
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~-----G--~~~~e~l~~Lk~-- 110 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACN-----G--TASVEQLKELKK-- 110 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecC-----C--CCCHHHHHHHHH--
Confidence 5667776665554443321222223444334456778888999998864454433211 1 134555555544
Q ss_pred cCCCcEEcCCHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCC
Q 024300 147 VPVASMLTPNQFEAEQLTGFR--IGSEADGREACKILHAAGP 186 (269)
Q Consensus 147 l~~~dii~pN~~E~~~l~g~~--~~~~~~~~~a~~~l~~~g~ 186 (269)
..+|-+..|.+=...++... ..+.++..+.++..++.|.
T Consensus 111 -aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi 151 (279)
T PRK08508 111 -AGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGL 151 (279)
T ss_pred -cCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 24566666654444444322 1234555556666666663
No 132
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=37.18 E-value=20 Score=33.07 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=16.2
Q ss_pred CCCCCchHHHH-HHHHHhhcc
Q 024300 226 AYFTGTGDLMT-ALLLGWSNK 245 (269)
Q Consensus 226 ~dt~GaGDaf~-a~~~~~l~~ 245 (269)
+.|+|-||+|+ |+|++.++.
T Consensus 422 ~sTVGLGDtissgaF~~~~~~ 442 (446)
T TIGR02045 422 KSTVGLGDTISTGAFVSYLAL 442 (446)
T ss_pred cceeccCcccchhHHHHHHHH
Confidence 57999999998 578777653
No 133
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=36.59 E-value=2.7e+02 Score=23.78 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEE-----cCCHHHHHHhhCCCCCCHHHH
Q 024300 100 FLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASML-----TPNQFEAEQLTGFRIGSEADG 174 (269)
Q Consensus 100 ~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii-----~pN~~E~~~l~g~~~~~~~~~ 174 (269)
..+.+.++++.+++. +..+.++.|.. ...+. +.+ +++..|++ ..+.+....+.|.. .+.+
T Consensus 139 ~~~~l~~l~~~~k~~--g~~~~i~TnG~------~~~~~---~~~-ll~~~d~~~isl~~~~~~~~~~~~g~~---~~~v 203 (295)
T TIGR02494 139 QPEFALALLQACHER--GIHTAVETSGF------TPWET---IEK-VLPYVDLFLFDIKHLDDERHKEVTGVD---NEPI 203 (295)
T ss_pred hHHHHHHHHHHHHHc--CCcEeeeCCCC------CCHHH---HHH-HHhhCCEEEEeeccCChHHHHHHhCCC---hHHH
Confidence 356667889999987 88888887543 12222 222 44555553 34566666676642 3566
Q ss_pred HHHHHHHHhcCCCeE
Q 024300 175 REACKILHAAGPAKV 189 (269)
Q Consensus 175 ~~a~~~l~~~g~~~V 189 (269)
.+.++.|.+.+.+..
T Consensus 204 l~~i~~l~~~~~~~~ 218 (295)
T TIGR02494 204 LENLEALAAAGKNVV 218 (295)
T ss_pred HHHHHHHHhCCCcEE
Confidence 677777877765443
No 134
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=36.45 E-value=1.5e+02 Score=28.17 Aligned_cols=78 Identities=22% Similarity=0.312 Sum_probs=42.2
Q ss_pred ccccchHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHH
Q 024300 30 GNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVE 109 (269)
Q Consensus 30 G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~ 109 (269)
|...+++.+++.|..+..+... .|+.+ .++.-++++.+-...+ .+-+++-| .++.+...++
T Consensus 109 g~krLv~kara~G~~I~gvvIs-----AGIP~-------le~A~ElI~~L~~~G~-~yv~fKPG------tIeqI~svi~ 169 (717)
T COG4981 109 GGKRLVQKARASGAPIDGVVIS-----AGIPS-------LEEAVELIEELGDDGF-PYVAFKPG------TIEQIRSVIR 169 (717)
T ss_pred ChHHHHHHHHhcCCCcceEEEe-----cCCCc-------HHHHHHHHHHHhhcCc-eeEEecCC------cHHHHHHHHH
Confidence 3334555566666555544422 12222 2444455555543232 22234434 3677788888
Q ss_pred HHHhcCCCceEEEccccc
Q 024300 110 KLRSINPNLIYVCDPVMG 127 (269)
Q Consensus 110 ~~k~~~~~~~vv~Dp~~~ 127 (269)
.+|++ |..||++--...
T Consensus 170 IAka~-P~~pIilq~egG 186 (717)
T COG4981 170 IAKAN-PTFPIILQWEGG 186 (717)
T ss_pred HHhcC-CCCceEEEEecC
Confidence 88885 889999886543
No 135
>PLN02623 pyruvate kinase
Probab=35.95 E-value=3.9e+02 Score=25.81 Aligned_cols=84 Identities=4% Similarity=0.087 Sum_probs=57.1
Q ss_pred ecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHh
Q 024300 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK 145 (269)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ 145 (269)
.+++.+.+.+.-.++. .+|.|...+.-+.+....+.+.++.+.+ ++.++.-. -..+.++.+.+
T Consensus 275 ~lTekD~~di~f~~~~----~vD~ialSFVr~a~DV~~~r~~l~~~~~---~~~iiakI---------Et~eaVeNlde- 337 (581)
T PLN02623 275 SITEKDWEDIKFGVEN----KVDFYAVSFVKDAQVVHELKDYLKSCNA---DIHVIVKI---------ESADSIPNLHS- 337 (581)
T ss_pred CCCHHHHHHHHHHHHc----CCCEEEECCCCCHHHHHHHHHHHHHcCC---cceEEEEE---------CCHHHHHhHHH-
Confidence 4677777776434432 3677888888887777777777765422 44554442 34566666776
Q ss_pred ccCCCcEEcCCHHHHHHhhCC
Q 024300 146 VVPVASMLTPNQFEAEQLTGF 166 (269)
Q Consensus 146 ll~~~dii~pN~~E~~~l~g~ 166 (269)
++..+|.+..-..++..=+|.
T Consensus 338 Il~g~DgImIgrgDLgvelg~ 358 (581)
T PLN02623 338 IITASDGAMVARGDLGAELPI 358 (581)
T ss_pred HHHhCCEEEECcchhhhhcCc
Confidence 788999998888888777665
No 136
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=35.74 E-value=76 Score=26.68 Aligned_cols=51 Identities=14% Similarity=0.129 Sum_probs=33.7
Q ss_pred cCHHHHHHHHHHHHhCCCccccEEEEcccCChhh-HHHHHHHHHHHHhcCCCceEEEc
Q 024300 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSF-LNTILQVVEKLRSINPNLIYVCD 123 (269)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~-~~~i~~~l~~~k~~~~~~~vv~D 123 (269)
++...++++++.... +.|.++.|...+... .+.+.+.++.+|++ ++++..-
T Consensus 9 l~~~~~~d~Le~~g~----yID~lKfg~Gt~~l~~~~~l~eki~la~~~--~V~v~~G 60 (237)
T TIGR03849 9 LPPKFVEDYLKVCGD----YITFVKFGWGTSALIDRDIVKEKIEMYKDY--GIKVYPG 60 (237)
T ss_pred CCHHHHHHHHHHhhh----heeeEEecCceEeeccHHHHHHHHHHHHHc--CCeEeCC
Confidence 345666676665543 467888876543322 35788888888888 8777655
No 137
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=35.63 E-value=2e+02 Score=22.12 Aligned_cols=76 Identities=13% Similarity=0.158 Sum_probs=45.3
Q ss_pred eecCHHHHHHHHHHHHhCCCccccE-EEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHH
Q 024300 65 QVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYR 143 (269)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~-i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~ 143 (269)
..++.+++.+.++.+.. . ..+ ..+|-- ...+.+.++++.+|++ +.++.++.+.. .++. ..
T Consensus 44 ~~lt~eel~~~I~~~~~--~--~~gVt~SGGE---l~~~~l~~ll~~lk~~--Gl~i~l~Tg~~-------~~~~---~~ 104 (147)
T TIGR02826 44 TKLTPEYLTKTLDKYRS--L--ISCVLFLGGE---WNREALLSLLKIFKEK--GLKTCLYTGLE-------PKDI---PL 104 (147)
T ss_pred cCCCHHHHHHHHHHhCC--C--CCEEEEechh---cCHHHHHHHHHHHHHC--CCCEEEECCCC-------CHHH---HH
Confidence 34666666665544431 1 233 344432 3456788899999988 88898887422 2222 22
Q ss_pred HhccCCCcEEcCCHHHH
Q 024300 144 EKVVPVASMLTPNQFEA 160 (269)
Q Consensus 144 ~~ll~~~dii~pN~~E~ 160 (269)
.+++++|+++....+.
T Consensus 105 -~il~~iD~l~~g~y~~ 120 (147)
T TIGR02826 105 -ELVQHLDYLKTGRWIH 120 (147)
T ss_pred -HHHHhCCEEEEChHHH
Confidence 3677889888766543
No 138
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=35.34 E-value=24 Score=32.76 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=14.6
Q ss_pred CCCCCchHHHHH-HHHHhhc
Q 024300 226 AYFTGTGDLMTA-LLLGWSN 244 (269)
Q Consensus 226 ~dt~GaGDaf~a-~~~~~l~ 244 (269)
+.|+|-||+|+| +|++.++
T Consensus 436 ~sTVGLGDtisagaF~~~~~ 455 (463)
T PRK03979 436 KSTVGLGDTISAGAFVSYLS 455 (463)
T ss_pred cceeccCcccchhHHHHHHH
Confidence 679999999995 5555554
No 139
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=35.24 E-value=2.5e+02 Score=23.01 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCccccEEEEcccC-ChhhHHHHHHHHHHHHhcCCCceEEEcccccc
Q 024300 69 GQQLCDLIEGLEANNLLYYTHLLTGYIG-SVSFLNTILQVVEKLRSINPNLIYVCDPVMGD 128 (269)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~i~~G~l~-~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~ 128 (269)
.++..++++.+.. +.+++++|+-. .....+.+.++++.+++. +.+|++|.-..+
T Consensus 12 ~~~a~~i~~~~~~----~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~--~~~I~~D~K~~D 66 (226)
T PF00215_consen 12 LEEALRIADELGD----YVDIIKVGTPLFLAYGLEALPEIIEELKER--GKPIFLDLKLGD 66 (226)
T ss_dssp HHHHHHHHHHHGG----GSSEEEEEHHHHHHHCHHHHHHHHHHHHHT--TSEEEEEEEE-S
T ss_pred HHHHHHHHHHhcC----cceEEEEChHHHhcCChhhHHHHHHHHHHh--cCCEeeeeeecc
Confidence 3455555555553 36789999632 112233668889999988 799999975553
No 140
>PRK06354 pyruvate kinase; Provisional
Probab=34.98 E-value=4.2e+02 Score=25.67 Aligned_cols=84 Identities=13% Similarity=0.114 Sum_probs=55.1
Q ss_pred ecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHh
Q 024300 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK 145 (269)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ 145 (269)
.+++.+.+.+.-.++. .+|.|...+.-+.+....+.+.++..... +++++.-. -..+..+.+.+
T Consensus 175 ~ltekD~~di~f~~~~----~vD~ia~SFVr~~~dv~~~r~~l~~~~~~--~~~iiaKI---------Et~eav~nlde- 238 (590)
T PRK06354 175 AITEKDREDLIFGLEQ----GVDWIALSFVRNPSDVLEIRELIEEHNGK--HIPIIAKI---------EKQEAIDNIDA- 238 (590)
T ss_pred CCCHHHHHHHHHHHHc----CCCEEEEcCCCCHHHHHHHHHHHHHhcCC--CceEEEEE---------CCHHHHHhHHH-
Confidence 4677777776433332 36888888888877777777777433222 45555443 34466666666
Q ss_pred ccCCCcEEcCCHHHHHHhhC
Q 024300 146 VVPVASMLTPNQFEAEQLTG 165 (269)
Q Consensus 146 ll~~~dii~pN~~E~~~l~g 165 (269)
++..+|-+..-..++..=.|
T Consensus 239 I~~~~DgImVaRGDLgve~g 258 (590)
T PRK06354 239 ILELCDGLMVARGDLGVEIP 258 (590)
T ss_pred HHHhcCEEEEccchhhcccC
Confidence 77789998888888776666
No 141
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=34.91 E-value=30 Score=28.17 Aligned_cols=47 Identities=28% Similarity=0.229 Sum_probs=35.8
Q ss_pred CCCcEEcCCHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCCeEEEEee
Q 024300 148 PVASMLTPNQFEAEQLTGF-RIGSEADGREACKILHAAGPAKVVITSI 194 (269)
Q Consensus 148 ~~~dii~pN~~E~~~l~g~-~~~~~~~~~~a~~~l~~~g~~~Vvvt~g 194 (269)
.+..++.|++.....+... ++.=...+++..+.|+++|++..++++|
T Consensus 66 ~Rl~llqp~~~qv~~~v~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGG 113 (227)
T KOG1615|consen 66 ARLSLLQPLQVQVEQFVIKQKPTLTPGIRELVSRLHARGTQVYLISGG 113 (227)
T ss_pred HHHHHhcccHHHHHHHHhcCCCccCCCHHHHHHHHHHcCCeEEEEcCC
Confidence 3678899999988877644 3222346788899999999988898876
No 142
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=34.14 E-value=1.2e+02 Score=23.53 Aligned_cols=85 Identities=13% Similarity=0.199 Sum_probs=42.6
Q ss_pred cCccccccchHHHHhcCCceeeeceEEe--ecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHH
Q 024300 26 QGYVGNKSAVFPLQLLGYDVDPIHSVQF--SNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNT 103 (269)
Q Consensus 26 ~g~~G~~a~~~~l~~~Gv~~~~i~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~ 103 (269)
+|++|. ..++.|...|..+..+....- ....+...+.+...+. +.+.+.+.. +|+|..-..+.....+.
T Consensus 7 tG~vG~-~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~---~~~~~al~~-----~d~vi~~~~~~~~~~~~ 77 (183)
T PF13460_consen 7 TGFVGR-ALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDP---DSVKAALKG-----ADAVIHAAGPPPKDVDA 77 (183)
T ss_dssp TSHHHH-HHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCH---HHHHHHHTT-----SSEEEECCHSTTTHHHH
T ss_pred CChHHH-HHHHHHHHCCCEEEEEecCchhcccccccccceeeehhh---hhhhhhhhh-----cchhhhhhhhhcccccc
Confidence 344444 467788888876665543321 0112222222333333 344444443 45554433333334667
Q ss_pred HHHHHHHHHhcCCCceEE
Q 024300 104 ILQVVEKLRSINPNLIYV 121 (269)
Q Consensus 104 i~~~l~~~k~~~~~~~vv 121 (269)
+..+++.+++. +++-+
T Consensus 78 ~~~~~~a~~~~--~~~~~ 93 (183)
T PF13460_consen 78 AKNIIEAAKKA--GVKRV 93 (183)
T ss_dssp HHHHHHHHHHT--TSSEE
T ss_pred ccccccccccc--ccccc
Confidence 77888888877 55433
No 143
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.80 E-value=3.8e+02 Score=24.64 Aligned_cols=158 Identities=11% Similarity=0.164 Sum_probs=86.1
Q ss_pred CCccccCCCCCCCcEEEEecccccCcccccc-chHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHh
Q 024300 3 PPILSLALPSETGRVLSIQSHTVQGYVGNKS-AVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEA 81 (269)
Q Consensus 3 ~~~~~~~~~~~~~~vl~i~g~~~~g~~G~~a-~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (269)
|.--++.++-.-+.|+++.|..+.|+--.-. ....++..|..+..+-.++ +....++++...-.+
T Consensus 89 p~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDT--------------FRagAfDQLkqnA~k 154 (483)
T KOG0780|consen 89 PGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADT--------------FRAGAFDQLKQNATK 154 (483)
T ss_pred CCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecc--------------cccchHHHHHHHhHh
Confidence 4445667777788999999998877643322 2234677777666554443 112344444333333
Q ss_pred CCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCc-eEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHH
Q 024300 82 NNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNL-IYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA 160 (269)
Q Consensus 82 ~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~-~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~ 160 (269)
..+ - ..|......+..+..+-+++.|+. +. .|++|.+.|- -...++.+.+++ -.+.+.||+-
T Consensus 155 ~~i---P--~ygsyte~dpv~ia~egv~~fKke--~fdvIIvDTSGRh----~qe~sLfeEM~~----v~~ai~Pd~v-- 217 (483)
T KOG0780|consen 155 ARV---P--FYGSYTEADPVKIASEGVDRFKKE--NFDVIIVDTSGRH----KQEASLFEEMKQ----VSKAIKPDEI-- 217 (483)
T ss_pred hCC---e--eEecccccchHHHHHHHHHHHHhc--CCcEEEEeCCCch----hhhHHHHHHHHH----HHhhcCCCeE--
Confidence 222 1 223323345667777888999887 43 5778986652 233344443333 3445555432
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHh-cCCCeEEEEe
Q 024300 161 EQLTGFRIGSEADGREACKILHA-AGPAKVVITS 193 (269)
Q Consensus 161 ~~l~g~~~~~~~~~~~a~~~l~~-~g~~~Vvvt~ 193 (269)
++=.+...-+..++.++.|.+ -++..|++|.
T Consensus 218 --i~VmDasiGQaae~Qa~aFk~~vdvg~vIlTK 249 (483)
T KOG0780|consen 218 --IFVMDASIGQAAEAQARAFKETVDVGAVILTK 249 (483)
T ss_pred --EEEEeccccHhHHHHHHHHHHhhccceEEEEe
Confidence 111111112455555666664 4677888884
No 144
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=33.17 E-value=2.8e+02 Score=22.96 Aligned_cols=83 Identities=19% Similarity=0.103 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhhCCCCCCHHHHHHHH
Q 024300 99 SFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREAC 178 (269)
Q Consensus 99 ~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~g~~~~~~~~~~~a~ 178 (269)
....++..+++.+++. ++.+.+|....+. ..+..+.+++ -.+|++.-+..==....|.... .+.....
T Consensus 90 A~~~TI~~~i~~A~~~--~~~v~iDl~~~~~-----~~~~~~~l~~---~gvd~~~~H~g~D~q~~G~~~~--~~~l~~i 157 (217)
T COG0269 90 ADDATIKKAIKVAKEY--GKEVQIDLIGVWD-----PEQRAKWLKE---LGVDQVILHRGRDAQAAGKSWG--EDDLEKI 157 (217)
T ss_pred CCHHHHHHHHHHHHHc--CCeEEEEeecCCC-----HHHHHHHHHH---hCCCEEEEEecccHhhcCCCcc--HHHHHHH
Confidence 3467888999999998 8999999644321 1222222222 3667776555333333666431 2334445
Q ss_pred HHHHhcCCCeEEEEee
Q 024300 179 KILHAAGPAKVVITSI 194 (269)
Q Consensus 179 ~~l~~~g~~~Vvvt~g 194 (269)
+++.++| -.|.|++|
T Consensus 158 k~~~~~g-~~vAVaGG 172 (217)
T COG0269 158 KKLSDLG-AKVAVAGG 172 (217)
T ss_pred HHhhccC-ceEEEecC
Confidence 6666655 56788887
No 145
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=33.09 E-value=96 Score=29.18 Aligned_cols=51 Identities=8% Similarity=0.055 Sum_probs=29.4
Q ss_pred HHHHHhCCCccccEEEEcccCChhh--------HHHHH-------HHHHHHHhcCCCceEEEcccc
Q 024300 76 IEGLEANNLLYYTHLLTGYIGSVSF--------LNTIL-------QVVEKLRSINPNLIYVCDPVM 126 (269)
Q Consensus 76 ~~~~~~~~~~~~~~i~~G~l~~~~~--------~~~i~-------~~l~~~k~~~~~~~vv~Dp~~ 126 (269)
++.+++..+-.+|.|.+.+-|=++. .+++. .+++.+.+++..+.|++||.-
T Consensus 81 ~~~l~~~~I~~IDlVvvNLYPF~~tv~~~~~~~~e~IEnIDIGGptmlRaAAKN~~~V~Vv~dp~d 146 (511)
T TIGR00355 81 DADLEEHGIEPIDLVVVNLYPFKETVAKPGVTLAEAVENIDIGGPTMLRAAAKNHADVTILVDPKD 146 (511)
T ss_pred HHHHHHcCCCceeEEEEeccChHHHhccCCCCHHHHHHhccCCcHHHHHHHHhCCCCEEEECCHHH
Confidence 4455555555578777766542221 11221 345555566668999999943
No 146
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=32.78 E-value=52 Score=24.50 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=27.8
Q ss_pred CCCchHHHH---HHHHHhhccCCCCHHHHHHHHHHHHHHHhhcC
Q 024300 228 FTGTGDLMT---ALLLGWSNKYRDNLDIAAELAVSSLQVLLLLM 268 (269)
Q Consensus 228 t~GaGDaf~---a~~~~~l~~~g~~~~~a~~~A~~~~~~~l~~~ 268 (269)
..|-||+++ +.++.-+++ |++++++...-..-+.+.|+..
T Consensus 56 f~~~GC~~~~Asas~~~~~i~-gk~l~ea~~i~~~~i~~~l~~~ 98 (126)
T PF01592_consen 56 FQGFGCAISIASASMMCELIK-GKTLEEALKITAEDIEEALGGL 98 (126)
T ss_dssp EEEESSHHHHHHHHHHHHHHT-TSBHHHHHCHHHHHHHHHHTC-
T ss_pred EEeecChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcc
Confidence 445566665 456667787 9999999877766666666643
No 147
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=32.58 E-value=1e+02 Score=20.47 Aligned_cols=32 Identities=19% Similarity=0.116 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEeeec-CCc
Q 024300 167 RIGSEADGREACKILHAAGPAKVVITSINI-DGN 199 (269)
Q Consensus 167 ~~~~~~~~~~a~~~l~~~g~~~Vvvt~g~~-~g~ 199 (269)
+..+.+-+..++.++++..+..++|++| . .|+
T Consensus 13 ~~~D~~~i~~~Ld~~~~~~~~~~lvhGg-a~~Ga 45 (71)
T PF10686_consen 13 DWTDHELIWAALDKVHARHPDMVLVHGG-APKGA 45 (71)
T ss_pred ccccHHHHHHHHHHHHHhCCCEEEEECC-CCCCH
Confidence 3445566777788888777888999987 4 554
No 148
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=32.30 E-value=61 Score=20.24 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=26.8
Q ss_pred EEEEecccccCcccccc-chHHHHhcCCceeeece
Q 024300 17 VLSIQSHTVQGYVGNKS-AVFPLQLLGYDVDPIHS 50 (269)
Q Consensus 17 vl~i~g~~~~g~~G~~a-~~~~l~~~Gv~~~~i~~ 50 (269)
++.|.+....|..|..+ ....|.++|+++..+++
T Consensus 2 ~i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 2 AIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred EEEEeccccCcccCHHHHHHHHHHHcCCeEEEEec
Confidence 56788888778777665 56678999999999965
No 149
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=32.24 E-value=1.9e+02 Score=21.15 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=35.9
Q ss_pred ccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHH
Q 024300 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA 160 (269)
Q Consensus 87 ~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~ 160 (269)
+|.|.+..... ....+.++++.+|++.|+++|++=-.... ..++ .+ ...+.+|++...+.|.
T Consensus 40 pdiv~~S~~~~--~~~~~~~~~~~ik~~~p~~~iv~GG~~~t-----~~p~---~~--~~~~~~D~vv~GEgE~ 101 (127)
T cd02068 40 PDVVGISLMTS--AIYEALELAKIAKEVLPNVIVVVGGPHAT-----FFPE---EI--LEEPGVDFVVIGEGEE 101 (127)
T ss_pred CCEEEEeeccc--cHHHHHHHHHHHHHHCCCCEEEECCcchh-----hCHH---HH--hcCCCCCEEEECCcHH
Confidence 67665554332 23356778888888877788877532221 1111 11 1346789988877664
No 150
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=31.62 E-value=1.3e+02 Score=24.04 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCccccEEEEccc---CChhhHHHHHHHHHHHHhcCCCceEEE-ccccc
Q 024300 70 QQLCDLIEGLEANNLLYYTHLLTGYI---GSVSFLNTILQVVEKLRSINPNLIYVC-DPVMG 127 (269)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~i~~G~l---~~~~~~~~i~~~l~~~k~~~~~~~vv~-Dp~~~ 127 (269)
..+.+++..+.. +++.+-.. ...+..+.+..+++.+++.||++||++ .+...
T Consensus 49 ~~~a~~ia~~~a------~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~ 104 (178)
T PF14606_consen 49 PEVADLIAEIDA------DLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPY 104 (178)
T ss_dssp HHHHHHHHHS--------SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----
T ss_pred HHHHHHHhcCCC------CEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCc
Confidence 455555555542 33333332 234456778899999999999999764 44443
No 151
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=31.59 E-value=2.9e+02 Score=24.68 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=43.4
Q ss_pred ccEEEEcccCChhh----HHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhc-c--CCCcEEcCCHHH
Q 024300 87 YTHLLTGYIGSVSF----LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKV-V--PVASMLTPNQFE 159 (269)
Q Consensus 87 ~~~i~~G~l~~~~~----~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~l-l--~~~dii~pN~~E 159 (269)
|.-|..+++....+ .....++++.|++. +..+++|.+|.--..+-++....+.+.+ + + -+.|+=+.++++
T Consensus 30 f~~IFtsl~~~~~~~~~~~~~~~ell~~Ankl--g~~vivDvnPsil~~l~~S~~~l~~f~e-~G~~glRlD~gfS~eei 106 (360)
T COG3589 30 FKRIFTSLLIPEEDAELYFHRFKELLKEANKL--GLRVIVDVNPSILKELNISLDNLSRFQE-LGVDGLRLDYGFSGEEI 106 (360)
T ss_pred ccceeeecccCCchHHHHHHHHHHHHHHHHhc--CcEEEEEcCHHHHhhcCCChHHHHHHHH-hhhhheeecccCCHHHH
Confidence 55566776654443 35567889999998 9999999877510001122222333333 2 1 155776666666
Q ss_pred HHHhhC
Q 024300 160 AEQLTG 165 (269)
Q Consensus 160 ~~~l~g 165 (269)
++.-..
T Consensus 107 ~~ms~~ 112 (360)
T COG3589 107 AEMSKN 112 (360)
T ss_pred HHHhcC
Confidence 655433
No 152
>smart00642 Aamy Alpha-amylase domain.
Probab=31.49 E-value=57 Score=25.62 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcCCCceEEEccccc
Q 024300 101 LNTILQVVEKLRSINPNLIYVCDPVMG 127 (269)
Q Consensus 101 ~~~i~~~l~~~k~~~~~~~vv~Dp~~~ 127 (269)
.+.+.++++.+|++ ++.|++|.++.
T Consensus 69 ~~d~~~lv~~~h~~--Gi~vilD~V~N 93 (166)
T smart00642 69 MEDFKELVDAAHAR--GIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEECCC
Confidence 35577889999998 99999998876
No 153
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=31.11 E-value=3e+02 Score=24.42 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHH------HHHhh--CCC------
Q 024300 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE------AEQLT--GFR------ 167 (269)
Q Consensus 102 ~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E------~~~l~--g~~------ 167 (269)
+....+.+.+++. |+.++-.| ++.+..+.+.+ + .+++++.--.| ++.+. |.+
T Consensus 76 e~~~~L~~~~~~~--Gi~~~stp---------fd~~svd~l~~-~--~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStG 141 (329)
T TIGR03569 76 EDHRELKEYCESK--GIEFLSTP---------FDLESADFLED-L--GVPRFKIPSGEITNAPLLKKIARFGKPVILSTG 141 (329)
T ss_pred HHHHHHHHHHHHh--CCcEEEEe---------CCHHHHHHHHh-c--CCCEEEECcccccCHHHHHHHHhcCCcEEEECC
Confidence 3345566777777 99998887 45555554433 2 35555432222 22222 222
Q ss_pred CCCHHHHHHHHHHHHhcCCC
Q 024300 168 IGSEADGREACKILHAAGPA 187 (269)
Q Consensus 168 ~~~~~~~~~a~~~l~~~g~~ 187 (269)
..+.++++.+++.+.+.|..
T Consensus 142 matl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 142 MATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 25789999999999887865
No 154
>PRK09206 pyruvate kinase; Provisional
Probab=30.69 E-value=4.6e+02 Score=24.60 Aligned_cols=84 Identities=14% Similarity=0.081 Sum_probs=55.4
Q ss_pred ecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHh
Q 024300 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK 145 (269)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ 145 (269)
.+++.+.+.+.-.++. .+|.|...+.-+.+....+.+.++..... ++.++.-. -..+.++.+.+
T Consensus 169 ~ltekD~~di~f~~~~----~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~--~~~iiaKI---------Et~eav~nlde- 232 (470)
T PRK09206 169 ALAEKDKQDLIFGCEQ----GVDFVAASFIRKRSDVLEIREHLKAHGGE--NIQIISKI---------ENQEGLNNFDE- 232 (470)
T ss_pred CCCHHHHHHHHHHHHc----CCCEEEEcCCCCHHHHHHHHHHHHHcCCC--CceEEEEE---------CCHHHHHhHHH-
Confidence 4677777776444432 36788888888877777777777654311 34555443 34466666666
Q ss_pred ccCCCcEEcCCHHHHHHhhC
Q 024300 146 VVPVASMLTPNQFEAEQLTG 165 (269)
Q Consensus 146 ll~~~dii~pN~~E~~~l~g 165 (269)
++..+|-+..-..++..=+|
T Consensus 233 Il~~~DgImVaRGDLgvelg 252 (470)
T PRK09206 233 ILEASDGIMVARGDLGVEIP 252 (470)
T ss_pred HHHhCCEEEECcchhhhhcC
Confidence 77789988888888776555
No 155
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=30.50 E-value=4.6e+02 Score=24.62 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=56.4
Q ss_pred ecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHh
Q 024300 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK 145 (269)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ 145 (269)
.+++.+.+.+.-.++. .+|.|...+.-+.+....+.+.++...+ ++.++.-. -..+..+.+.+
T Consensus 171 ~ltekD~~di~f~~~~----~vD~ia~SFV~~~~di~~~r~~l~~~~~---~~~iiakI---------Et~~av~nlde- 233 (480)
T cd00288 171 ALSEKDKADLRFGVEQ----GVDMIFASFVRKASDVLEIREVLGEKGK---DIKIIAKI---------ENQEGVNNFDE- 233 (480)
T ss_pred CCCHHHHHHHHHHHHc----CCCEEEECCCCCHHHHHHHHHHHHhcCC---CceEEEEE---------CCHHHHHhHHH-
Confidence 4666777665433332 3688888898888888888887776522 45555442 34455666666
Q ss_pred ccCCCcEEcCCHHHHHHhhCC
Q 024300 146 VVPVASMLTPNQFEAEQLTGF 166 (269)
Q Consensus 146 ll~~~dii~pN~~E~~~l~g~ 166 (269)
++..+|.+..-..++..=+|.
T Consensus 234 I~~~~DgImIargDLg~e~g~ 254 (480)
T cd00288 234 ILEASDGIMVARGDLGVEIPA 254 (480)
T ss_pred HHHhcCEEEECcchhhhhcCh
Confidence 777799998888888776663
No 156
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.08 E-value=29 Score=28.05 Aligned_cols=40 Identities=8% Similarity=0.066 Sum_probs=31.5
Q ss_pred CCCchHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhc
Q 024300 228 FTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQVLLLL 267 (269)
Q Consensus 228 t~GaGDaf~a~~~~~l~~~g~~~~~a~~~A~~~~~~~l~~ 267 (269)
..|+|-+|.=+|+-.--+.++++||+.++-..+++.++.|
T Consensus 146 IgGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~r 185 (224)
T KOG0174|consen 146 IGGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIER 185 (224)
T ss_pred eccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3699999997776544334899999999988888877765
No 157
>PRK15447 putative protease; Provisional
Probab=28.67 E-value=3.9e+02 Score=23.18 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=49.5
Q ss_pred cCHHHHHHHHHHHHhCCCccccEEEEcccC----ChhhHHHHHHHHHHHHhcCCCceEEEc-cccccCCCccCChhhHHH
Q 024300 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIG----SVSFLNTILQVVEKLRSINPNLIYVCD-PVMGDEGKLYVPSELVSV 141 (269)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~----~~~~~~~i~~~l~~~k~~~~~~~vv~D-p~~~~~~~~~~~~~~~~~ 141 (269)
.+...++.+...+.+.. +|+|.+|.-. .+-..+.+.++++.++++ ++.|++- |.... .+++ .+.
T Consensus 12 ~p~~~~~~~~~~~~~~g---aDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~--gkkvyva~p~i~~-----~~~e-~~~ 80 (301)
T PRK15447 12 WPKETVRDFYQRAADSP---VDIVYLGETVCSKRRELKVGDWLELAERLAAA--GKEVVLSTLALVE-----APSE-LKE 80 (301)
T ss_pred CCCCCHHHHHHHHHcCC---CCEEEECCccCCCccCCCHHHHHHHHHHHHHc--CCEEEEEeccccc-----CHHH-HHH
Confidence 44566677766675433 6889988432 112356788889999988 8787774 32211 0112 223
Q ss_pred HHHhccC-CCc-EEcCCHHHHHHhh
Q 024300 142 YREKVVP-VAS-MLTPNQFEAEQLT 164 (269)
Q Consensus 142 ~~~~ll~-~~d-ii~pN~~E~~~l~ 164 (269)
+.+ ++. ..| ++.-|..++..+-
T Consensus 81 l~~-~l~~~~~~v~v~d~g~l~~~~ 104 (301)
T PRK15447 81 LRR-LVENGEFLVEANDLGAVRLLA 104 (301)
T ss_pred HHH-HHhcCCCEEEEeCHHHHHHHH
Confidence 333 232 344 6677888777665
No 158
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=28.64 E-value=3.3e+02 Score=22.33 Aligned_cols=80 Identities=13% Similarity=0.100 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCc-eEEEccccccCCCccCChhhHHHHHHhccCC
Q 024300 71 QLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNL-IYVCDPVMGDEGKLYVPSELVSVYREKVVPV 149 (269)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~-~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~ 149 (269)
.++++.+.+....+-..++|+++-.-.....+...+.++.++++ +. .+.++|-+...-.. .++. .+.++. .+++
T Consensus 135 aL~~~~~~~~~~~~~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r--~~rviwLnP~~~~~~~~-~~~~-~~~~~~-~~~~ 209 (222)
T PF05762_consen 135 ALREFLRQYARPDLRRTTVVIISDGWDTNDPEPLAEELRRLRRR--GRRVIWLNPLPRAGWPG-YDPV-ARGYRA-ALPY 209 (222)
T ss_pred HHHHHHHHhhcccccCcEEEEEecccccCChHHHHHHHHHHHHh--CCEEEEECCcccccCCC-CChH-HHHHHH-hCCh
Confidence 44444444442222123456665542223345556667777766 43 45688864321001 2333 455555 7788
Q ss_pred CcEEcC
Q 024300 150 ASMLTP 155 (269)
Q Consensus 150 ~dii~p 155 (269)
+|.+.+
T Consensus 210 v~~~~~ 215 (222)
T PF05762_consen 210 VDACRP 215 (222)
T ss_pred hhhcCC
Confidence 776654
No 159
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=28.58 E-value=1.6e+02 Score=27.80 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCccccEEEEcccCChhhH--------HHHH-------HHHHHHHhcCCCceEEEcccc
Q 024300 74 DLIEGLEANNLLYYTHLLTGYIGSVSFL--------NTIL-------QVVEKLRSINPNLIYVCDPVM 126 (269)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~~G~l~~~~~~--------~~i~-------~~l~~~k~~~~~~~vv~Dp~~ 126 (269)
...+.+++..+-.+|.|.+.+-|=++.. +.+. .+++.+.+++..+.|+.||.-
T Consensus 84 ~h~~~l~~~~i~~IDlVvvNLYPF~~tv~~~~~~~~~~iEnIDIGGpsmlRaAAKN~~~V~Vv~dp~d 151 (513)
T PRK00881 84 EHVAALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAIENIDIGGPTMVRAAAKNHKDVAVVVDPAD 151 (513)
T ss_pred HHHHHHHHcCCCceeEEEEeCcChHHHhccCCCCHHHHHhcccCCcHHHHHHHHhCCCCEEEECCHHH
Confidence 3344455555545787777665422211 1111 345555565668999999843
No 160
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=27.91 E-value=1.3e+02 Score=28.08 Aligned_cols=85 Identities=15% Similarity=0.240 Sum_probs=43.7
Q ss_pred HHHHhcCCceeeeceEEeecCCCCCCc------------ceeecCHHHHHHHHHHHHhCCCccccEEEEcccCChh----
Q 024300 36 FPLQLLGYDVDPIHSVQFSNHTGYPTF------------KGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVS---- 99 (269)
Q Consensus 36 ~~l~~~Gv~~~~i~~~~~~~~~g~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~---- 99 (269)
+.|+..|+++..+. +-||++++ .|--|...+.+..++.+++..+-.+|.+.+.+-|=.+
T Consensus 37 k~l~eaGi~V~~Vs-----~~TgfpE~ldGRVKTLHP~ihgGiL~~r~~~~h~~~l~e~~I~~iDlVvvNLYPF~~tv~~ 111 (515)
T COG0138 37 KLLAEAGIPVTEVS-----DITGFPEMLDGRVKTLHPKIHGGILARRDKDEHMAALEEHGIEPIDLVVVNLYPFEETVAK 111 (515)
T ss_pred HHHHhCCCCCCchh-----hccCChhHhCCcceeeccccccceeeccccHHHHHHHHHcCCCCccEEEEcCCChhhhccC
Confidence 45666676655444 33455543 1112333344444455555555456776665443211
Q ss_pred ----hHHHHH-------HHHHHHHhcCCCceEEEccc
Q 024300 100 ----FLNTIL-------QVVEKLRSINPNLIYVCDPV 125 (269)
Q Consensus 100 ----~~~~i~-------~~l~~~k~~~~~~~vv~Dp~ 125 (269)
..+.+. .+++.+.+++.++.|+.||.
T Consensus 112 ~~~~~~e~vEnIDIGGptmlRaAAKN~~~V~V~~dp~ 148 (515)
T COG0138 112 PGVTLEEAVENIDIGGPTMLRAAAKNHKDVTVVVDPA 148 (515)
T ss_pred CCCCHHHHHhccccCchHHhHHhhhccCCeeEEecch
Confidence 111111 34555556667899999994
No 161
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=27.89 E-value=1.2e+02 Score=25.70 Aligned_cols=53 Identities=11% Similarity=0.196 Sum_probs=35.8
Q ss_pred cCHHHHHHHHHHHHhCCCccccEEEEcccCChh--hHHHHHHHHHHHHhcCCCceEEEc
Q 024300 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVS--FLNTILQVVEKLRSINPNLIYVCD 123 (269)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~--~~~~i~~~l~~~k~~~~~~~vv~D 123 (269)
.+.++++.+.+++....-..+|+|.+|.|.+.. ..+.+.++++.++ +.++.|-
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~----~~~vTFH 121 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAG----PLAVTFH 121 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhc----CCceEEe
Confidence 456777777777665444457899999986543 3566777887774 5666664
No 162
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=27.85 E-value=4.2e+02 Score=23.25 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=53.2
Q ss_pred eeecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHH
Q 024300 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYR 143 (269)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~ 143 (269)
|..++++++.+++...++... -.+-.+|--|+ ...-.+.++++.+.+ ++|+|++.++- .+.|.++.
T Consensus 146 g~~v~~e~La~i~~~~~~~Ga--kNvN~Vgg~Pt-p~lp~Ile~l~~~~~---~iPvvwNSnmY------~s~E~l~l-- 211 (335)
T COG1313 146 GKEVTPEDLAEIILELRRHGA--KNVNFVGGDPT-PHLPFILEALRYASE---NIPVVWNSNMY------MSEETLKL-- 211 (335)
T ss_pred CeEecHHHHHHHHHHHHHhcC--cceeecCCCCC-CchHHHHHHHHHHhc---CCCEEEecCCc------cCHHHHHH--
Confidence 446778888888777664321 01223332222 345667788888865 69999998664 44554442
Q ss_pred HhccCCCcEE-----cCCHHHHHHhhCCC
Q 024300 144 EKVVPVASML-----TPNQFEAEQLTGFR 167 (269)
Q Consensus 144 ~~ll~~~dii-----~pN~~E~~~l~g~~ 167 (269)
+...+|+. -.|.+-+..+++.+
T Consensus 212 --L~gvVDiyL~DfKYgNdeca~kySkvp 238 (335)
T COG1313 212 --LDGVVDIYLPDFKYGNDECAEKYSKVP 238 (335)
T ss_pred --hhccceeeecccccCCHHHHHHhhcCC
Confidence 33345554 46777788887754
No 163
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=27.62 E-value=3.9e+02 Score=22.87 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEc-CC----HHHHHHhhC---CCC-------
Q 024300 104 ILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLT-PN----QFEAEQLTG---FRI------- 168 (269)
Q Consensus 104 i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~-pN----~~E~~~l~g---~~~------- 168 (269)
=.++++++++.. +.||+-|. .+.+..+ ...+++|++- |- ..|+-.-.+ ..+
T Consensus 69 GL~~L~~vk~~~-GlpvvTeV---------~~~~~~~----~v~~~~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~ 134 (264)
T PRK05198 69 GLKILQEVKETF-GVPVLTDV---------HEPEQAA----PVAEVVDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQF 134 (264)
T ss_pred HHHHHHHHHHHH-CCceEEEe---------CCHHHHH----HHHhhCcEEEECchhcchHHHHHHHhccCCeEEecCCCc
Confidence 345666666542 89998885 2223222 2556788883 22 233332222 221
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEee
Q 024300 169 GSEADGREACKILHAAGPAKVVITSI 194 (269)
Q Consensus 169 ~~~~~~~~a~~~l~~~g~~~Vvvt~g 194 (269)
.+.++...+++++...|...|+++-.
T Consensus 135 ~t~~e~~~aaeyi~~~Gn~~vilcER 160 (264)
T PRK05198 135 LAPWDMKNVVDKVREAGNDKIILCER 160 (264)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 46788889999999999999999853
No 164
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=27.62 E-value=4.4e+02 Score=25.59 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=58.9
Q ss_pred cCccccccchHHHHhcCCceeeeceEEe--e--cCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhH
Q 024300 26 QGYVGNKSAVFPLQLLGYDVDPIHSVQF--S--NHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFL 101 (269)
Q Consensus 26 ~g~~G~~a~~~~l~~~Gv~~~~i~~~~~--~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~ 101 (269)
+|..|. ...+.|++.|+++..+..+.. . ...|+..++|+.-+++.+++. .++ +++.+.+.. . +.
T Consensus 408 ~Gr~G~-~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~a--gi~-----~A~~vvv~~-~---d~ 475 (621)
T PRK03562 408 FGRFGQ-IVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESA--GAA-----KAEVLINAI-D---DP 475 (621)
T ss_pred cChHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhc--CCC-----cCCEEEEEe-C---CH
Confidence 455554 345678888998877754421 0 123455556654443333221 233 356555544 2 23
Q ss_pred HHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEcCCHHHHHHhh
Q 024300 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (269)
Q Consensus 102 ~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~pN~~E~~~l~ 164 (269)
+....++..+|+++|+.+++.=. .+.+..+.+++ -.+|.+.+-..|....+
T Consensus 476 ~~n~~i~~~ar~~~p~~~iiaRa---------~d~~~~~~L~~---~Gad~v~~e~~e~sl~l 526 (621)
T PRK03562 476 QTSLQLVELVKEHFPHLQIIARA---------RDVDHYIRLRQ---AGVEKPERETFEGALKS 526 (621)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEE---------CCHHHHHHHHH---CCCCEEehhhHhHHHHH
Confidence 33445667777777787765522 12222232322 25777766666654443
No 165
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=26.63 E-value=1.3e+02 Score=18.19 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=21.0
Q ss_pred cCCHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCCeEE
Q 024300 154 TPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVV 190 (269)
Q Consensus 154 ~pN~~E~~~l~g~~~~~~~~~~~a~~~l~~~g~~~Vv 190 (269)
+.+.+|+..|+|.. .....++.|.++|...++
T Consensus 2 fLT~~El~elTG~k-----~~~~Q~~~L~~~Gi~~~~ 33 (47)
T PF13986_consen 2 FLTDEELQELTGYK-----RPSKQIRWLRRNGIPFVV 33 (47)
T ss_pred CCCHHHHHHHHCCC-----CHHHHHHHHHHCCCeeEE
Confidence 35679999999974 223345667777765544
No 166
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=26.60 E-value=2e+02 Score=25.34 Aligned_cols=68 Identities=22% Similarity=0.238 Sum_probs=34.1
Q ss_pred EEcccCChhhHHHHHHHHHHHHhcCCCceE-EEcc-ccccCCCccCChhhHHHHHHhccCCCcEEc---CCHHHHHHhhC
Q 024300 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIY-VCDP-VMGDEGKLYVPSELVSVYREKVVPVASMLT---PNQFEAEQLTG 165 (269)
Q Consensus 91 ~~G~l~~~~~~~~i~~~l~~~k~~~~~~~v-v~Dp-~~~~~~~~~~~~~~~~~~~~~ll~~~dii~---pN~~E~~~l~g 165 (269)
.+|.++-+..-.. +.+.++.- +..| .+|| ........ ..-.....+.+ +|+.+|+++ |.-+|-..|.+
T Consensus 144 TvGIiG~G~IG~~---va~~l~af--gm~v~~~d~~~~~~~~~~-~~~~~~~~Ld~-lL~~sDiv~lh~PlT~eT~g~i~ 216 (324)
T COG0111 144 TVGIIGLGRIGRA---VAKRLKAF--GMKVIGYDPYSPRERAGV-DGVVGVDSLDE-LLAEADILTLHLPLTPETRGLIN 216 (324)
T ss_pred EEEEECCCHHHHH---HHHHHHhC--CCeEEEECCCCchhhhcc-ccceecccHHH-HHhhCCEEEEcCCCCcchhcccC
Confidence 5555544444443 44555554 7665 5999 33321110 00011122344 888899885 55566555555
No 167
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=26.04 E-value=78 Score=26.76 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCCceEEEccccc
Q 024300 101 LNTILQVVEKLRSINPNLIYVCDPVMG 127 (269)
Q Consensus 101 ~~~i~~~l~~~k~~~~~~~vv~Dp~~~ 127 (269)
.+-+.++++.|+++ ++.||+|-++.
T Consensus 51 ~~d~~~Lv~~~h~~--gi~VilD~V~N 75 (316)
T PF00128_consen 51 MEDFKELVDAAHKR--GIKVILDVVPN 75 (316)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEEETS
T ss_pred hhhhhhhhhccccc--cceEEEeeecc
Confidence 45578899999998 99999998775
No 168
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=25.94 E-value=1.2e+02 Score=24.86 Aligned_cols=54 Identities=7% Similarity=0.011 Sum_probs=31.6
Q ss_pred cCHHHHHHHHHHHHhCCCccccEEEEcccCCh--hhHHHHHHHHHHHHhcCCCceEEEcc
Q 024300 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIGSV--SFLNTILQVVEKLRSINPNLIYVCDP 124 (269)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~--~~~~~i~~~l~~~k~~~~~~~vv~Dp 124 (269)
.+.++++.+.+++....-...|++..|.|... .+.+.+.++++.++ +.+++|-=
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~~tFHR 121 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAG----GMPVTFHR 121 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT----TSEEEE-G
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC----CCeEEEeC
Confidence 35677777776665443334789999998543 33567777777774 67888763
No 169
>PRK03673 hypothetical protein; Provisional
Probab=25.86 E-value=1.9e+02 Score=26.32 Aligned_cols=79 Identities=9% Similarity=0.029 Sum_probs=40.7
Q ss_pred ccCcccccc---chHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccE-EEEcccCChhh
Q 024300 25 VQGYVGNKS---AVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSF 100 (269)
Q Consensus 25 ~~g~~G~~a---~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~G~l~~~~~ 100 (269)
..|.+-+.. +...|+..|+.+....++. +. .+.+.+.++...+ .+|. |..|-+.+ ..
T Consensus 14 l~G~i~dtN~~~la~~L~~~G~~v~~~~~v~--D~------------~~~i~~~l~~a~~----~~DlVI~tGGlGp-t~ 74 (396)
T PRK03673 14 LHGQIVDTNAAWLADFFFHQGLPLSRRNTVG--DN------------LDALVAILRERSQ----HADVLIVNGGLGP-TS 74 (396)
T ss_pred CCCeEEEhHHHHHHHHHHHCCCEEEEEEEcC--CC------------HHHHHHHHHHHhc----cCCEEEEcCCCCC-CC
Confidence 455544333 3445788888766655443 11 2333333322211 2453 55555443 34
Q ss_pred HHHHHHHHHHHHhcCCCceEEEcccc
Q 024300 101 LNTILQVVEKLRSINPNLIYVCDPVM 126 (269)
Q Consensus 101 ~~~i~~~l~~~k~~~~~~~vv~Dp~~ 126 (269)
.|.+.+++.++- +.++++|+..
T Consensus 75 dD~t~~avA~a~----g~~L~~d~e~ 96 (396)
T PRK03673 75 DDLSALAAATAA----GEGLVLHEEW 96 (396)
T ss_pred cccHHHHHHHHc----CCCceeCHHH
Confidence 566666666553 6688888754
No 170
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=25.30 E-value=1.7e+02 Score=24.20 Aligned_cols=37 Identities=32% Similarity=0.293 Sum_probs=23.3
Q ss_pred ccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEcccc
Q 024300 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVM 126 (269)
Q Consensus 87 ~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~ 126 (269)
.+.+++|+. -....=.++++.+++..|+.+|++|.-.
T Consensus 29 v~~iKVG~~---L~~~~G~~~i~~lk~~~~~~~IflDlKl 65 (218)
T PRK13305 29 VDIVEAGTI---LCLNEGLGAVKALREQCPDKIIVADWKV 65 (218)
T ss_pred CCEEEECHH---HHHHhCHHHHHHHHHhCCCCEEEEEeec
Confidence 567899972 1222223556677766678899999533
No 171
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=25.26 E-value=1.1e+02 Score=26.07 Aligned_cols=55 Identities=11% Similarity=0.045 Sum_probs=34.0
Q ss_pred ceeecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCce-EEEcccc
Q 024300 63 KGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLI-YVCDPVM 126 (269)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~-vv~Dp~~ 126 (269)
.|+.++.+.+.+..+.+.+.+. .+.+|.- -.......+++.++++ +.+ +++++.+
T Consensus 186 FGE~lp~~~~~~a~~~~~~aDl----llviGTS---l~V~pa~~l~~~a~~~--g~~viiIN~~~ 241 (260)
T cd01409 186 FGENVPRDRVVTAAARLAEADA----LLVLGSS---LMVYSGYRFVLAAAEA--GLPIAIVNIGP 241 (260)
T ss_pred CCCCCCHHHHHHHHHHHhcCCE----EEEeCcC---ceecchhhHHHHHHHC--CCcEEEEcCCC
Confidence 5677887788888777776432 3666752 2233345666777766 555 5577644
No 172
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=24.77 E-value=3.7e+02 Score=21.93 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHH
Q 024300 71 QLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (269)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~ 144 (269)
.+++.++.+.+.. +++|.++.+ ..+..+++..|+.+++.|+...- .....++.+.+
T Consensus 3 ~~~~~l~~l~~~g---~dgi~v~~~----------g~~~~~k~~~~~~~i~~~~~~nv-----~N~~s~~~~~~ 58 (233)
T PF01136_consen 3 ELEKYLDKLKELG---VDGILVSNP----------GLLELLKELGPDLKIIADYSLNV-----FNSESARFLKE 58 (233)
T ss_pred HHHHHHHHHHhCC---CCEEEEcCH----------HHHHHHHHhCCCCcEEEecCccC-----CCHHHHHHHHH
Confidence 4566666666543 678877653 23456666667899999986542 34455555554
No 173
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=24.56 E-value=3.5e+02 Score=24.26 Aligned_cols=77 Identities=9% Similarity=0.069 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEc------CCHHHHHHhh--CCC------
Q 024300 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLT------PNQFEAEQLT--GFR------ 167 (269)
Q Consensus 102 ~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~------pN~~E~~~l~--g~~------ 167 (269)
+-+..+.+.+++. |++++-+| ++.+..+.+.+ .+|+++ -|..=+..+. |.+
T Consensus 169 e~l~~L~~~~~~~--Gl~~~t~v---------~d~~~~~~l~~----~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G 233 (360)
T PRK12595 169 EGLKILKQVADEY--GLAVISEI---------VNPADVEVALD----YVDVIQIGARNMQNFELLKAAGRVNKPVLLKRG 233 (360)
T ss_pred HHHHHHHHHHHHc--CCCEEEee---------CCHHHHHHHHH----hCCeEEECcccccCHHHHHHHHccCCcEEEeCC
Confidence 3344444556666 88988887 33333443332 356554 2332223332 222
Q ss_pred C-CCHHHHHHHHHHHHhcCCCeEEEEe
Q 024300 168 I-GSEADGREACKILHAAGPAKVVITS 193 (269)
Q Consensus 168 ~-~~~~~~~~a~~~l~~~g~~~Vvvt~ 193 (269)
. .+.++...+++.+.+.|.+.++++.
T Consensus 234 ~~~t~~e~~~Ave~i~~~Gn~~i~L~e 260 (360)
T PRK12595 234 LSATIEEFIYAAEYIMSQGNGQIILCE 260 (360)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEC
Confidence 1 4688999999999988988888875
No 174
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=24.17 E-value=1.7e+02 Score=23.90 Aligned_cols=56 Identities=11% Similarity=-0.030 Sum_probs=33.4
Q ss_pred ceeecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceE-EEccccc
Q 024300 63 KGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIY-VCDPVMG 127 (269)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~v-v~Dp~~~ 127 (269)
.|+.++...+++..+.+.+++. .+.+|.- -.......++..++++ +.++ ++++.+.
T Consensus 137 FgE~lp~~~~~~a~~~~~~aDl----llviGTS---l~V~pa~~l~~~~~~~--g~~vi~iN~~~~ 193 (206)
T cd01410 137 FGERLPPENWMGAAAAACRADL----FLCLGTS---LQVTPAANLPLKAARA--GGRLVIVNLQPT 193 (206)
T ss_pred CCCCCCHHHHHHHHHHHhcCCE----EEEECcC---ceehhHHHHHHHHHhc--CCeEEEECCCCC
Confidence 4677776667777777765432 3566752 2233445566677766 6665 4677543
No 175
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=24.00 E-value=4.5e+02 Score=27.42 Aligned_cols=79 Identities=20% Similarity=0.172 Sum_probs=45.2
Q ss_pred CCCCCcEEEEeccc-ccCccccc-----cchHHHHhcCCceeeeceEEeecCCC--CCC-cceeecCHHHHHHHHHHHHh
Q 024300 11 PSETGRVLSIQSHT-VQGYVGNK-----SAVFPLQLLGYDVDPIHSVQFSNHTG--YPT-FKGQVLNGQQLCDLIEGLEA 81 (269)
Q Consensus 11 ~~~~~~vl~i~g~~-~~g~~G~~-----a~~~~l~~~Gv~~~~i~~~~~~~~~g--~~~-~~~~~~~~~~~~~~~~~~~~ 81 (269)
.++.++||.|++.. .+|.++-. .+++.|+++|+.+..+........++ +.. .+..+++.+.+.++. .+
T Consensus 3 ~~~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii---~~ 79 (1050)
T TIGR01369 3 RTDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKII---EK 79 (1050)
T ss_pred CCCCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHH---HH
Confidence 45688999998875 46665532 26888999999877775443111121 221 122345555554443 33
Q ss_pred CCCccccEEEEccc
Q 024300 82 NNLLYYTHLLTGYI 95 (269)
Q Consensus 82 ~~~~~~~~i~~G~l 95 (269)
. .+|+|+.++.
T Consensus 80 e---~~DaIlp~~g 90 (1050)
T TIGR01369 80 E---RPDAILPTFG 90 (1050)
T ss_pred h---CCCEEEECCC
Confidence 2 3788877653
No 176
>PRK05826 pyruvate kinase; Provisional
Probab=23.98 E-value=6e+02 Score=23.76 Aligned_cols=85 Identities=8% Similarity=0.018 Sum_probs=53.9
Q ss_pred ecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHh
Q 024300 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK 145 (269)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ 145 (269)
.+++.+...+...++. .+|+|.+.+.-+.+....+.+.++.+... ++.++.-. -..+.++.+.+
T Consensus 170 ~lte~D~~~i~~ald~----g~d~I~~sfV~saedv~~l~~~l~~~~~~--~~~iiakI---------Et~eav~nlde- 233 (465)
T PRK05826 170 ALTEKDKADIKFAAEQ----GVDYIAVSFVRSAEDVEEARRLLREAGCP--HAKIIAKI---------ERAEAVDNIDE- 233 (465)
T ss_pred CCChhhHHHHHHHHHC----CCCEEEECCCCCHHHHHHHHHHHHHcCCc--CceEEEEE---------cCHHHHHhHHH-
Confidence 3556666665444442 36888888887777777666666554321 34444332 34456666666
Q ss_pred ccCCCcEEcCCHHHHHHhhCC
Q 024300 146 VVPVASMLTPNQFEAEQLTGF 166 (269)
Q Consensus 146 ll~~~dii~pN~~E~~~l~g~ 166 (269)
++..+|.+..-..++..=+|.
T Consensus 234 I~~~~DgImIgrgDLg~elg~ 254 (465)
T PRK05826 234 IIEASDGIMVARGDLGVEIPD 254 (465)
T ss_pred HHHHcCEEEECcchhhhhcCc
Confidence 777799998888888766663
No 177
>COG4063 MtrA Tetrahydromethanopterin S-methyltransferase, subunit A [Coenzyme metabolism]
Probab=23.66 E-value=4e+02 Score=21.64 Aligned_cols=83 Identities=24% Similarity=0.271 Sum_probs=48.3
Q ss_pred cEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCC-CCCcceeecCHHHHHHHHHHHHhCCCccccEEEEcc
Q 024300 16 RVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTG-YPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGY 94 (269)
Q Consensus 16 ~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~ 94 (269)
|-|.+-|....|.+-.++ ...+-+.|++ ..-..+. .+| .+. -+.++.+.++++.+.++- +.+
T Consensus 72 RflvvcGaEv~GHitGq~-~~alh~NGvd-d~g~IiG---a~GAIPy--iENi~~eaveRfqqqvel----------vdl 134 (238)
T COG4063 72 RFLVVCGAEVQGHITGQS-MKALHANGVD-DKGRIIG---ATGAIPY--IENIPDEAVERFQQQVEL----------VDL 134 (238)
T ss_pred eEEEEecchhcceehhHH-HHHHHhcCCC-ccCcEec---ccccchh--hhcCCHHHHHHHHHHeee----------ehh
Confidence 446667777777776655 5566777887 2222222 222 222 256777777776644431 112
Q ss_pred cCChhhHHHHHHHHHHHHhcCC
Q 024300 95 IGSVSFLNTILQVVEKLRSINP 116 (269)
Q Consensus 95 l~~~~~~~~i~~~l~~~k~~~~ 116 (269)
+ +-+..+.+...++.+.++.|
T Consensus 135 i-d~eD~~~I~~~v~ecv~kdp 155 (238)
T COG4063 135 I-DVEDPDEITAKVEECVEKDP 155 (238)
T ss_pred c-ccCCHHHHHHHHHHHHhcCC
Confidence 2 22567778888888887644
No 178
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=23.11 E-value=5.5e+02 Score=22.97 Aligned_cols=109 Identities=16% Similarity=0.042 Sum_probs=61.9
Q ss_pred ecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHh
Q 024300 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK 145 (269)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ 145 (269)
.++.+++.+..+.+.+...-.+ .+..|.-++....+.+.++++.+++..|.+.+-+.| ...+..+.+++.
T Consensus 102 ~Ls~eEI~~~a~~~~~~Gv~~i-~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~---------lt~e~~~~Lk~a 171 (366)
T TIGR02351 102 KLNEEEIEREIEAIKKSGFKEI-LLVTGESEKAAGVEYIAEAIKLAREYFSSLAIEVQP---------LNEEEYKKLVEA 171 (366)
T ss_pred cCCHHHHHHHHHHHHhCCCCEE-EEeeCCCCCCCCHHHHHHHHHHHHHhCCcccccccc---------CCHHHHHHHHHc
Confidence 4677888887777666443111 133455455455788888999998764434332222 344555556552
Q ss_pred ccCCCcEE-----cCCHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCC
Q 024300 146 VVPVASML-----TPNQFEAEQLTG-FRIGSEADGREACKILHAAGPA 187 (269)
Q Consensus 146 ll~~~dii-----~pN~~E~~~l~g-~~~~~~~~~~~a~~~l~~~g~~ 187 (269)
.++-+ +.|.+-...+.. ....+.++..++.+.+.+.|.+
T Consensus 172 ---Gv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 216 (366)
T TIGR02351 172 ---GLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMR 216 (366)
T ss_pred ---CCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 33333 455555555541 1223566777778888777765
No 179
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=23.04 E-value=5.5e+02 Score=23.83 Aligned_cols=70 Identities=13% Similarity=0.101 Sum_probs=45.2
Q ss_pred EEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHH-hccCCCcEEc-----CCHHHHHHh
Q 024300 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE-KVVPVASMLT-----PNQFEAEQL 163 (269)
Q Consensus 91 ~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~-~ll~~~dii~-----pN~~E~~~l 163 (269)
.+|.+.+ ....++.+++..++++.|.+.|++=|+...... ...+..+.+.. .-...+|+++ ++.+|++.+
T Consensus 137 ~IGVITS-~tgAairDIl~~~~rR~P~~~viv~pt~VQG~~--A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~F 212 (440)
T COG1570 137 KIGVITS-PTGAALRDILHTLSRRFPSVEVIVYPTLVQGEG--AAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAF 212 (440)
T ss_pred eEEEEcC-CchHHHHHHHHHHHhhCCCCeEEEEeccccCCC--cHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhcc
Confidence 4566655 345678899999999989999998887763211 34455555543 1234588886 455666654
No 180
>COG3876 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.90 E-value=4.5e+02 Score=23.33 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHhcCCCce-EEEc-cccc
Q 024300 99 SFLNTILQVVEKLRSINPNLI-YVCD-PVMG 127 (269)
Q Consensus 99 ~~~~~i~~~l~~~k~~~~~~~-vv~D-p~~~ 127 (269)
.-+-++..+++.++++ +.+ +|+| ||+.
T Consensus 140 tyiytm~yameAs~e~--~k~fiVLDRPNP~ 168 (409)
T COG3876 140 TYIYTMAYAMEASAEN--GKEFIVLDRPNPM 168 (409)
T ss_pred hHHHHHHHHHHHHHHc--CCceEEeCCCCCC
Confidence 3456778889988887 654 6788 7775
No 181
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=22.71 E-value=4.9e+02 Score=22.24 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhccCCCcEEc-CC----HHHHHHhhCC---CC-------
Q 024300 104 ILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLT-PN----QFEAEQLTGF---RI------- 168 (269)
Q Consensus 104 i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll~~~dii~-pN----~~E~~~l~g~---~~------- 168 (269)
=.++++++++. -+.||+-|. .+.+..+ ....++|++- |- ..|+-.-.+. .+
T Consensus 61 GL~iL~~vk~~-~glpvvTeV---------~~~~~~~----~vae~vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~ 126 (258)
T TIGR01362 61 GLKILQKVKEE-FGVPILTDV---------HESSQCE----PVAEVVDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQF 126 (258)
T ss_pred HHHHHHHHHHH-hCCceEEEe---------CCHHHHH----HHHhhCcEEEeCchhcchHHHHHHHhccCCeEEecCCCc
Confidence 34556666654 289998885 2222222 2456788883 32 2343333332 11
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEee
Q 024300 169 GSEADGREACKILHAAGPAKVVITSI 194 (269)
Q Consensus 169 ~~~~~~~~a~~~l~~~g~~~Vvvt~g 194 (269)
-+.++...+++++...|...|+++-.
T Consensus 127 ~t~~e~l~aaeyi~~~Gn~~viLcER 152 (258)
T TIGR01362 127 LSPWDMKNVVEKVLSTGNKNILLCER 152 (258)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 35778888999999999999999853
No 182
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=21.96 E-value=3.7e+02 Score=20.58 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=33.8
Q ss_pred eeecCHHHHHHHHHHHHhCCCcccc-EEEEcccCChh-hHHHHHHHHHHHHhcCCCceEEEcc
Q 024300 64 GQVLNGQQLCDLIEGLEANNLLYYT-HLLTGYIGSVS-FLNTILQVVEKLRSINPNLIYVCDP 124 (269)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~G~l~~~~-~~~~i~~~l~~~k~~~~~~~vv~Dp 124 (269)
+..++.+.++++++.+.+... .. +..+|--|-.. ..+.+.++++.+|+.. +...+++.
T Consensus 43 g~~~~~~~~~~i~~~l~~~~~--~~gVt~sGGEPllq~~~~~l~~ll~~~k~~~-~~~~~~~~ 102 (154)
T TIGR02491 43 GKEFTEALEKEIIRDLNDNPL--IDGLTLSGGDPLYPRNVEELIELVKKIKAEF-PEKDIWLW 102 (154)
T ss_pred CCcCCHHHHHHHHHHHHhcCC--cCeEEEeChhhCCCCCHHHHHHHHHHHHHhC-CCCCEEEe
Confidence 456777788888887775431 23 34455333211 2367888899998741 34445554
No 183
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=21.92 E-value=3.2e+02 Score=19.85 Aligned_cols=58 Identities=22% Similarity=0.249 Sum_probs=33.5
Q ss_pred ecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccc
Q 024300 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG 127 (269)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~ 127 (269)
.++.+.+++++...++.. .-.|+=|.... ...+++..+-+..++..+...+.+||...
T Consensus 7 SMP~~~L~~l~~~a~~~~---~~~V~RG~~~g-~~~~t~~~~~~l~~~~~~~~~v~IdP~~F 64 (113)
T PF09673_consen 7 SMPDASLRNLLKQAERAG---VVVVFRGFPDG-SFKPTAKAIQELLRKDDPCPGVQIDPRLF 64 (113)
T ss_pred CCCHHHHHHHHHHHHhCC---cEEEEECCCCC-CHHHHHHHHHHHhhccCCCcceeEChhHH
Confidence 466778888877776643 33466677654 34444444444444431125788998554
No 184
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=21.90 E-value=4.4e+02 Score=21.41 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=20.8
Q ss_pred ccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEccccc
Q 024300 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG 127 (269)
Q Consensus 87 ~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~ 127 (269)
.+.+++|+-. ....=.++++.+++. +.++++|.-..
T Consensus 24 v~~iKig~~l---~~~~G~~~v~~l~~~--~~~v~lD~K~~ 59 (213)
T TIGR01740 24 IEVIKVGIDL---LLDGGDKIIDELAKL--NKLIFLDLKFA 59 (213)
T ss_pred CcEEEECHHH---HHhcCHHHHHHHHHc--CCCEEEEEeec
Confidence 4677888621 111112566777776 56888996443
No 185
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=21.59 E-value=5.1e+02 Score=22.05 Aligned_cols=63 Identities=17% Similarity=0.115 Sum_probs=37.4
Q ss_pred ccEEEEcccC----ChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhcc--CCCcEEcCCH
Q 024300 87 YTHLLTGYIG----SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVV--PVASMLTPNQ 157 (269)
Q Consensus 87 ~~~i~~G~l~----~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll--~~~dii~pN~ 157 (269)
..++++|+-. ...-...+.+.++.+++. +.+|++|.-..+ +........+. ++ ..+|.+|.|.
T Consensus 54 v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~--g~~VilD~K~~D-----IpnTv~~~a~a-~~~~~g~D~vTvh~ 122 (261)
T TIGR02127 54 AAVVKPQVAFFERFGSEGFKALEEVIAHARSL--GLPVLADVKRGD-----IGSTASAYAKA-WLGHLHADALTVSP 122 (261)
T ss_pred ceEEecCHHHHHhcCHHHHHHHHHHHHHHHHC--CCeEEEEeeccC-----hHHHHHHHHHH-HHhhcCCCEEEECC
Confidence 4568888621 122345567777888887 899999975543 22222222222 33 2478888874
No 186
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=21.42 E-value=1.1e+02 Score=25.99 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEee
Q 024300 172 ADGREACKILHAAGPAKVVITSI 194 (269)
Q Consensus 172 ~~~~~a~~~l~~~g~~~Vvvt~g 194 (269)
++.+++++.+.+.+.+.|++|.|
T Consensus 116 ~~~~eA~~~l~~~~~~~iflttG 138 (249)
T PF02571_consen 116 DSYEEAAELLKELGGGRIFLTTG 138 (249)
T ss_pred CCHHHHHHHHhhcCCCCEEEeCc
Confidence 45566666665556677777766
No 187
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=21.24 E-value=5.8e+02 Score=22.53 Aligned_cols=43 Identities=14% Similarity=0.003 Sum_probs=29.8
Q ss_pred CCCCCCCcEEEEecccccCcccc-ccchHHHHhcCCceeeeceE
Q 024300 9 ALPSETGRVLSIQSHTVQGYVGN-KSAVFPLQLLGYDVDPIHSV 51 (269)
Q Consensus 9 ~~~~~~~~vl~i~g~~~~g~~G~-~a~~~~l~~~Gv~~~~i~~~ 51 (269)
.+.+-.+.++-|.|..+.|+.-. ++....|...|..+..+..+
T Consensus 45 ~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD 88 (323)
T COG1703 45 YPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD 88 (323)
T ss_pred hhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC
Confidence 34555677899998887777654 33566788899777766543
No 188
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=21.15 E-value=5.4e+02 Score=22.20 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=38.4
Q ss_pred ccEEEEcccC----ChhhHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhhHHHHHHhcc---CCCcEEcCCH
Q 024300 87 YTHLLTGYIG----SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVV---PVASMLTPNQ 157 (269)
Q Consensus 87 ~~~i~~G~l~----~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~~~~ll---~~~dii~pN~ 157 (269)
..++++|+-. ...-..++.++++.+++. +.+|++|.-..+ +........+. ++ -.+|.+|.|.
T Consensus 54 v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~~--g~~VilD~K~~D-----I~nTv~~ya~a-~~~~~~g~DavTVhp 123 (278)
T PRK00125 54 VAAFKPQIAYFEAHGAEGLAQLERTIAYLREA--GVLVIADAKRGD-----IGSTAEAYAKA-AFESPLEADAVTVSP 123 (278)
T ss_pred ccEEeccHHHHHhcCchhhhHHHHHHHHHHHC--CCcEEEEeecCC-----hHHHHHHHHHH-HhcCccCCcEEEECC
Confidence 4568888621 112244667788999988 899999975543 22222222232 44 2589998883
No 189
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=20.94 E-value=3.2e+02 Score=25.00 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=35.0
Q ss_pred eecCHHHHHHHHHHHHhCCCccccEEEEcccCChhhHHHHHHHHHHHHhcC--CCceEEEc
Q 024300 65 QVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSIN--PNLIYVCD 123 (269)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~l~~~~~~~~i~~~l~~~k~~~--~~~~vv~D 123 (269)
..++.+++++..+.+.....-..|.|.+|.-. -+.+.+.++.+.++.++ +++++++=
T Consensus 268 i~i~~~dl~~~~~~l~~~~~~~~D~V~lGcPH--~S~~El~~ia~ll~gr~~~~~~~~~i~ 326 (400)
T PF04412_consen 268 ITITDADLEEVYEELNTAGDEKVDLVALGCPH--LSLEELREIAELLEGRKVHPNVPLWIT 326 (400)
T ss_pred EEeCHHHHHHHHHHhccCCCCCCCEEEECCCC--CCHHHHHHHHHHHhCCCCCCCceEEEE
Confidence 36788999999888832222247889988742 33555566666665542 44554443
No 190
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=20.46 E-value=2.2e+02 Score=23.86 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=25.1
Q ss_pred ccEEEEcccCChhhHHHHHHHHHHHHhcCCCceEEEcccc
Q 024300 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVM 126 (269)
Q Consensus 87 ~~~i~~G~l~~~~~~~~i~~~l~~~k~~~~~~~vv~Dp~~ 126 (269)
.|+|++|-- .....+.+.++++.+|+. ++|+++-|..
T Consensus 33 tdai~vGGS-~~vt~~~~~~~v~~ik~~--~lPvilfp~~ 69 (232)
T PRK04169 33 TDAIIVGGS-DGVTEENVDELVKAIKEY--DLPVILFPGN 69 (232)
T ss_pred CCEEEEcCC-CccchHHHHHHHHHHhcC--CCCEEEeCCC
Confidence 678877642 123345667778888875 7999998843
No 191
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=20.37 E-value=4.1e+02 Score=24.95 Aligned_cols=80 Identities=8% Similarity=0.011 Sum_probs=38.8
Q ss_pred CcEEEEecccccCccccccchHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccEEEEcc
Q 024300 15 GRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGY 94 (269)
Q Consensus 15 ~~vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~ 94 (269)
.+|-.|...+.+|..+.....+.++..|+.+....... . ..+..++..++..+++. .+++|++..
T Consensus 188 k~VaiI~~dd~yG~~~~~~~~~~~~~~Gi~I~~~~~i~--~----------~~~~~d~~~~l~klk~~---~a~vVvl~~ 252 (510)
T cd06364 188 NWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELIS--Q----------YSDEEEIQRVVEVIQNS---TAKVIVVFS 252 (510)
T ss_pred eEEEEEEecCcchHHHHHHHHHHHHHCCcEEEEEEEeC--C----------CCCHHHHHHHHHHHHhc---CCeEEEEEe
Confidence 34444444555555555555555566665544333221 0 01235666666666653 256665433
Q ss_pred cCChhhHHHHHHHHHHHHhc
Q 024300 95 IGSVSFLNTILQVVEKLRSI 114 (269)
Q Consensus 95 l~~~~~~~~i~~~l~~~k~~ 114 (269)
. . .....+++.+++.
T Consensus 253 ~-~----~~~~~ll~qa~~~ 267 (510)
T cd06364 253 S-G----PDLEPLIKEIVRR 267 (510)
T ss_pred C-c----HHHHHHHHHHHHh
Confidence 1 1 2233455666654
No 192
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=20.30 E-value=62 Score=30.00 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=15.6
Q ss_pred CCCCCchHHHHH-HHHHhhcc
Q 024300 226 AYFTGTGDLMTA-LLLGWSNK 245 (269)
Q Consensus 226 ~dt~GaGDaf~a-~~~~~l~~ 245 (269)
+.|+|-||+++| +|+..++.
T Consensus 429 ~sTVGlGDtisa~af~~~l~~ 449 (453)
T PRK14039 429 VTTVGLGDTLTAGTFLRLLEL 449 (453)
T ss_pred ccccccCccccHHHHHHHHHh
Confidence 689999999985 67766653
No 193
>PRK11325 scaffold protein; Provisional
Probab=20.26 E-value=1.4e+02 Score=22.26 Aligned_cols=38 Identities=21% Similarity=0.078 Sum_probs=27.7
Q ss_pred CCCCchHHHH---HHHHHhhccCCCCHHHHHHHHHHHHHHHh
Q 024300 227 YFTGTGDLMT---ALLLGWSNKYRDNLDIAAELAVSSLQVLL 265 (269)
Q Consensus 227 dt~GaGDaf~---a~~~~~l~~~g~~~~~a~~~A~~~~~~~l 265 (269)
...|-||+.+ |.+++-+++ |++++++..+....+...+
T Consensus 57 ~f~~~GC~is~Asas~~~e~~~-Gktl~ea~~i~~~~i~~~l 97 (127)
T PRK11325 57 KFKTYGCGSAIASSSLVTEWVK-GKTLDEALAIKNTDIAEEL 97 (127)
T ss_pred EEEeeCCHHHHHHHHHHHHHHc-CCCHHHHHhcCHHHHHHHc
Confidence 3456666665 677778888 9999999988776655554
No 194
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=20.12 E-value=3.3e+02 Score=24.95 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=34.3
Q ss_pred chHHHHhcCCceeeeceEEeecCCCCCCcceeecCHHHHHHHHHHHHhCCCccccE-EEEcccCChhhHHHHHHHHHHHH
Q 024300 34 AVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLR 112 (269)
Q Consensus 34 ~~~~l~~~Gv~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~G~l~~~~~~~~i~~~l~~~k 112 (269)
+...|+..|+++....++. + +.+.+.+.++...+ .+|. |..|-+.. ...|.+.+++..+-
T Consensus 25 l~~~L~~~G~~v~~~~~v~--D------------d~~~i~~~l~~a~~----~~DlVIttGGlgp-t~dD~t~eava~~~ 85 (413)
T TIGR00200 25 LADFLAHQGLPLSRRTTVG--D------------NPERLKTIIRIASE----RADVLIFNGGLGP-TSDDLTAETIATAK 85 (413)
T ss_pred HHHHHHHCCCeEEEEEEeC--C------------CHHHHHHHHHHHhc----CCCEEEEcCCCCC-CCcccHHHHHHHHh
Confidence 3445788888766555442 1 12334343333221 2564 44554432 44566666665552
Q ss_pred hcCCCceEEEcc
Q 024300 113 SINPNLIYVCDP 124 (269)
Q Consensus 113 ~~~~~~~vv~Dp 124 (269)
+.++++|+
T Consensus 86 ----g~~l~~~~ 93 (413)
T TIGR00200 86 ----GEPLVLNE 93 (413)
T ss_pred ----CCCcEECH
Confidence 45666665
No 195
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=20.06 E-value=5.2e+02 Score=21.61 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=42.5
Q ss_pred EEEEecccccCccccccchHHHHhcCCceeeeceEEee-cCCCCCCcceeecCHHHHHHHHHHHHhCCCcc-ccEEEEcc
Q 024300 17 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFS-NHTGYPTFKGQVLNGQQLCDLIEGLEANNLLY-YTHLLTGY 94 (269)
Q Consensus 17 vl~i~g~~~~g~~G~~a~~~~l~~~Gv~~~~i~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~G~ 94 (269)
||.+++ +|++|. ...+.|.+.|..+..+....-. ...+.....+...+.+.+...++.... +-. +|.+..-.
T Consensus 2 ilVtGa---tG~iG~-~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~--~~g~~d~v~~~~ 75 (285)
T TIGR03649 2 ILLTGG---TGKTAS-RIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDG--MEPEISAVYLVA 75 (285)
T ss_pred EEEEcC---CChHHH-HHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccC--cCCceeEEEEeC
Confidence 444443 455554 4466777778776655433200 011222222333344444444322111 002 34433211
Q ss_pred cCChhhHHHHHHHHHHHHhcCCCce-EEE
Q 024300 95 IGSVSFLNTILQVVEKLRSINPNLI-YVC 122 (269)
Q Consensus 95 l~~~~~~~~i~~~l~~~k~~~~~~~-vv~ 122 (269)
.......+....+++.+++. ++. +|+
T Consensus 76 ~~~~~~~~~~~~~i~aa~~~--gv~~~V~ 102 (285)
T TIGR03649 76 PPIPDLAPPMIKFIDFARSK--GVRRFVL 102 (285)
T ss_pred CCCCChhHHHHHHHHHHHHc--CCCEEEE
Confidence 11112234556677888877 653 443
No 196
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=20.02 E-value=1.7e+02 Score=19.89 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEe
Q 024300 171 EADGREACKILHAAGPAKVVITS 193 (269)
Q Consensus 171 ~~~~~~a~~~l~~~g~~~Vvvt~ 193 (269)
...+++++++|...|++.|-+.+
T Consensus 37 l~~IQrAaRkLd~qGI~~V~L~G 59 (77)
T PF12404_consen 37 LRAIQRAARKLDGQGIKNVALAG 59 (77)
T ss_pred hHHHHHHHHHHhhCCCceEEEec
Confidence 46789999999999999999987
Done!