BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024302
         (269 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8TRT5|RS4E_METAC 30S ribosomal protein S4e OS=Methanosarcina acetivorans (strain
           ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rps4e PE=3
           SV=1
          Length = 235

 Score = 35.0 bits (79), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 9/53 (16%)

Query: 208 NSRKGKKTLEEANMQLSRVPKAPKD-------YDILAIPLTSAAIRMLRVRKG 253
           NSR+GK+ L E  + +  +P+  KD       +D++ +PL + A RML+  KG
Sbjct: 52  NSREGKRILSEGKVLVDGIPR--KDLRFPVGLFDVITLPLVNEAYRMLQDEKG 102


>sp|P24200|MCRA_ECOLI 5-methylcytosine-specific restriction enzyme A OS=Escherichia coli
           (strain K12) GN=mcrA PE=4 SV=2
          Length = 277

 Score = 33.1 bits (74), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 21/121 (17%)

Query: 122 EFMEKTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYC------ 175
           + ++KT++ P GS     V R++ +        +++ + +  ++ +    C+ C      
Sbjct: 164 KLIKKTLSQPEGSRKPVEVERLQKVY-------VRDPMVKAWILQQSKGICENCGKNAPF 216

Query: 176 ---SSRENLTIDHVVPASRGGEWKWENLVAACFKCN-----SRKGKKTLEEANMQLSRVP 227
                   L + HV+P S GG    +N VA C  C+     S+  K+ +E   + ++R+ 
Sbjct: 217 YLNDGNPYLEVHHVIPLSSGGADTTDNCVALCPNCHRELHYSKNAKELIEMLYVNINRLQ 276

Query: 228 K 228
           K
Sbjct: 277 K 277


>sp|Q87HS0|DDL_VIBPA D-alanine--D-alanine ligase OS=Vibrio parahaemolyticus serotype
           O3:K6 (strain RIMD 2210633) GN=ddl PE=3 SV=1
          Length = 329

 Score = 32.7 bits (73), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 145 HLLQVVK--RRRIKNN---LSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRG 192
           +L+Q VK  R  IKN      +  L+Y D  T Q CS+  N TID +VP   G
Sbjct: 31  NLIQNVKVTRVEIKNEGWVTDQGELVYLDLNTKQLCSNESNQTIDFIVPCIHG 83


>sp|Q46GA7|RS4E_METBF 30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro
           / DSM 804) GN=rps4e PE=3 SV=1
          Length = 235

 Score = 32.0 bits (71), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 9/53 (16%)

Query: 208 NSRKGKKTLEEANMQLSRVPKAPKD-------YDILAIPLTSAAIRMLRVRKG 253
           NSR+GK+ L E  + +  +P+  KD       +D++ +PL +   RM +  KG
Sbjct: 52  NSREGKRILSEGKVLVDGIPR--KDLRFPVGLFDVITLPLVNETYRMFQDEKG 102


>sp|Q96MH2|HEXI2_HUMAN Protein HEXIM2 OS=Homo sapiens GN=HEXIM2 PE=1 SV=1
          Length = 286

 Score = 31.2 bits (69), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 30/64 (46%)

Query: 26  RDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNKKKSSKFSVDASLNVSGKGISGESEE 85
           RD  Q +  S +R     K + + P N     MN +   + ++D    +S  G SGESE 
Sbjct: 116 RDERQSQRASRVREEMFAKGQPVAPYNTTQFLMNDRDPEEPNLDVPHGISHPGSSGESEA 175

Query: 86  YDSD 89
            DSD
Sbjct: 176 GDSD 179


>sp|Q86L54|Y2829_DICDI TNF receptor-associated factor family protein DDB_G0272829
           OS=Dictyostelium discoideum GN=DDB_G0272829 PE=3 SV=1
          Length = 530

 Score = 31.2 bits (69), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 147 LQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFK 206
           L ++K   I+NNL  K + + DNF CQ C   E L I  ++P +R    +  N    C  
Sbjct: 12  LIIIKNESIENNL--KEISFSDNFKCQIC---EGLLISSLIP-NRMKALQCINGHCFCLT 65

Query: 207 C 207
           C
Sbjct: 66  C 66


>sp|Q8PV38|RS4E_METMA 30S ribosomal protein S4e OS=Methanosarcina mazei (strain ATCC
           BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
           GN=rps4e PE=3 SV=1
          Length = 235

 Score = 31.2 bits (69), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 9/59 (15%)

Query: 208 NSRKGKKTLEEANMQLSRVPKAPKD-------YDILAIPLTSAAIRMLRVRKGTPVEWR 259
           N+R+GK+ L E  + +  + +  KD       +D++ +PL + A RML+  KG  V ++
Sbjct: 52  NNREGKRILSEGKVLVDGISR--KDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYK 108


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,534,361
Number of Sequences: 539616
Number of extensions: 4260500
Number of successful extensions: 9296
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 9291
Number of HSP's gapped (non-prelim): 10
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)