Query 024302
Match_columns 269
No_of_seqs 244 out of 1330
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 05:53:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgp_A HNH endonuclease; Q39X4 99.5 8.8E-16 3E-20 123.5 -1.7 59 165-223 31-92 (112)
2 3m7k_A Restriction endonucleas 94.7 0.0049 1.7E-07 51.4 -0.3 48 167-217 58-122 (142)
3 1e7l_A GP49, recombination end 94.7 0.006 2.1E-07 52.0 0.1 54 158-214 9-68 (157)
4 1tif_A IF3-N, translation init 53.3 42 0.0014 25.1 6.5 53 94-149 10-65 (78)
5 2jb0_B Colicin E7; hydrolase/i 47.1 3.4 0.00012 34.1 -0.4 34 176-209 91-125 (131)
6 1fr2_B Colicin E9; protein-pro 45.3 3.6 0.00012 34.1 -0.6 33 176-208 94-127 (134)
7 7cei_B Protein (colicin E7 imm 40.4 4.7 0.00016 35.5 -0.6 34 176-209 166-200 (206)
8 3gox_A Restriction endonucleas 35.6 11 0.00036 33.2 0.8 49 157-212 120-179 (200)
9 1ayz_A UBC2, ubiquitin-conjuga 19.0 24 0.00082 29.3 0.0 7 65-71 136-142 (169)
10 6rxn_A Rubredoxin; electron tr 14.7 31 0.0011 23.3 -0.3 38 168-213 3-42 (46)
No 1
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=99.50 E-value=8.8e-16 Score=123.51 Aligned_cols=59 Identities=39% Similarity=0.584 Sum_probs=53.2
Q ss_pred HHHCCCccccCCCC---CCCccceeeecCCCCCcchhhHHHhchhhhcCcCCCCHHHhcccc
Q 024302 165 MYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQL 223 (269)
Q Consensus 165 l~RD~~~C~YCG~~---~~ltVDHIiP~S~GG~~tweNLV~aC~~CN~~Kg~rtpee~gm~L 223 (269)
+.|++++|+|||.. ..+++|||+|++.||.++|+||+++|..||..|++++++++...+
T Consensus 31 l~r~~~~C~yCg~~~~~~~~~vDHIiP~s~gG~~~~~Nl~~lC~~CN~~K~~~~~~e~~~~l 92 (112)
T 2qgp_A 31 NRIARGICHYCGEIFPPEELTMDHLVPVVRGGKSTRGNVVPACKECNNRKKYLLPVEWEEYL 92 (112)
T ss_dssp HHHHHTBCTTTCCBCCGGGEEEEESSCTTTTCCCSTTTEEEEEHHHHHHHHTCCSHHHHHHH
T ss_pred HHHcCCcCCCCCCcCCCCCcEEEEEeehhcCCCCChhhChhhCHHHHHHHccCCHHHHHHHH
Confidence 57899999999987 358999999999999999999999999999999999999875433
No 2
>3m7k_A Restriction endonuclease PACI; HNH restriction endonuclease, beta-BETA-alpha-metal active S base-PAIR RARE cutter; HET: DNA; 1.92A {Pseudomonas alcaligenes} PDB: 3ldy_A*
Probab=94.70 E-value=0.0049 Score=51.44 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=34.2
Q ss_pred HCCCccccCCCC-----------------CCCccceeeecCCCCCcchhhHHHhchhhhcCcCCCCHH
Q 024302 167 RDNFTCQYCSSR-----------------ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLE 217 (269)
Q Consensus 167 RD~~~C~YCG~~-----------------~~ltVDHIiP~S~GG~~tweNLV~aC~~CN~~Kg~rtpe 217 (269)
+....|-|||.. ..|+||...| .-..+.+||+.||..||+.|++.+-.
T Consensus 58 ~q~k~C~YCgite~~~k~L~k~k~Rg~~~~~LeIeR~~~---~~~Ys~dNLaLAC~~CNnaKsdk~ta 122 (142)
T 3m7k_A 58 SAQRHCGYCGISEAGFTSLHRTNPRGYHIQCLGVDRSDS---FEGYSPQNARLACFICNRIKSNIFSA 122 (142)
T ss_dssp GGGCBCTTTCCBHHHHHTTTCBCTTSCBCCSCEEEESST---TSCBCTTTEEEECHHHHHHHTTTSCH
T ss_pred CCCCceeeecccHHHHHHHhhccCCCccccceEEeccCC---ccccCHHHHHHHHHHHhccccccccc
Confidence 566789999965 1145554221 12256899999999999999998754
No 3
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=94.66 E-value=0.006 Score=52.02 Aligned_cols=54 Identities=17% Similarity=0.348 Sum_probs=40.9
Q ss_pred HHHHHHHHHHCCCccccCCCC-----CCCccceeeecCCCCCcchhhHH-HhchhhhcCcCCC
Q 024302 158 NLSRKNLMYRDNFTCQYCSSR-----ENLTIDHVVPASRGGEWKWENLV-AACFKCNSRKGKK 214 (269)
Q Consensus 158 ~~~R~~Vl~RD~~~C~YCG~~-----~~ltVDHIiP~S~GG~~tweNLV-~aC~~CN~~Kg~r 214 (269)
+..+..+++.++++|+.|+.+ ..+++||--+.. |..+ .++. .+|..||...|..
T Consensus 9 ~~~~~~l~~~Q~g~C~IC~~~l~~~~~~~~vDHdH~~~--g~~t-G~VRGlLC~~CN~~lG~~ 68 (157)
T 1e7l_A 9 KEEKQKFYDAQNGKCLICQRELNPDVQANHLDHDHELN--GPKA-GKVRGLLCNLCDAAEGQM 68 (157)
T ss_dssp HHHHHHHHHHTTTBCTTTCCBCCSSGGGSEEEECCCCS--STTT-TBEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcCcccCCccccccccccccCCCCCC--CCCC-CcchhhccHhHhchhccc
Confidence 567889999999999999985 457899988665 2221 3555 7999999985443
No 4
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=53.35 E-value=42 Score=25.13 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=40.0
Q ss_pred ccccceEEEEcCCcceeeeecHHHHHHHHhhCc---eeecCCceeecceEEEEeeceec
Q 024302 94 ELACFRGLVLDISYRPVNVVCWKRAICLEFMEK---TINSPNGSFYIPAVLRVRHLLQV 149 (269)
Q Consensus 94 ~~~~~~vLvLnasy~Pl~~~s~qrAv~l~~~~k---~v~s~s~~~~vPsVIrL~~yv~~ 149 (269)
.+....|.+++..++.+.+++.++|+.+.-.-. +.-+|. .-|-|-++..|-+.
T Consensus 10 ~Ir~~eVrli~~~Ge~lGv~~~~eAl~~A~e~~LDLVevsp~---a~PPVCkImDygK~ 65 (78)
T 1tif_A 10 QIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPN---AKPPVCRIMDYGKF 65 (78)
T ss_dssp GCCCSEEEEECTTSCEEEEEEHHHHHHHHHHTTCEEEEEETT---SSSCEEEEECHHHH
T ss_pred ccCCCEEEEECCCCcCCCcccHHHHHHHHHHcCCCEEEECCC---CCCCEEEEecchhH
Confidence 356678999999999999999999998765433 455555 34788888877433
No 5
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=47.08 E-value=3.4 Score=34.13 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=25.4
Q ss_pred CCCCCCccceeeecCCCCC-cchhhHHHhchhhhc
Q 024302 176 SSRENLTIDHVVPASRGGE-WKWENLVAACFKCNS 209 (269)
Q Consensus 176 G~~~~ltVDHIiP~S~GG~-~tweNLV~aC~~CN~ 209 (269)
|.....+++|+.|.+.||. .+.+||...-..-|.
T Consensus 91 G~r~kfelHH~~~I~~GG~VYdlDNL~i~TPk~Hi 125 (131)
T 2jb0_B 91 GKRTSFELHHEKPISQNGGVYDMDNISVVTPKRHI 125 (131)
T ss_dssp TTBCBCEEEESSCCC--CCSSBGGGEEEECHHHHH
T ss_pred CCeeEEEEEeechhhcCCeeeeeeeEEEcCcchhh
Confidence 3445789999999999998 899999877665443
No 6
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=45.35 E-value=3.6 Score=34.12 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=26.6
Q ss_pred CCCCCCccceeeecCCCCC-cchhhHHHhchhhh
Q 024302 176 SSRENLTIDHVVPASRGGE-WKWENLVAACFKCN 208 (269)
Q Consensus 176 G~~~~ltVDHIiP~S~GG~-~tweNLV~aC~~CN 208 (269)
|.....+++|+.|.+.||. .+.+||+..-..-|
T Consensus 94 G~r~kfelHH~~~I~~GG~VYdlDNL~i~TPk~H 127 (134)
T 1fr2_B 94 GGRKVYELHHDKPISQGGEVYDMDNIRVTTPKRH 127 (134)
T ss_dssp TTBCBCEEEESSCGGGTCCSSBGGGEEEECHHHH
T ss_pred CCeeEEEEEecchhhcCCeeeeeecEEEcCcccc
Confidence 3345789999999999998 89999987765444
No 7
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=40.42 E-value=4.7 Score=35.50 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=27.6
Q ss_pred CCCCCCccceeeecCCCCC-cchhhHHHhchhhhc
Q 024302 176 SSRENLTIDHVVPASRGGE-WKWENLVAACFKCNS 209 (269)
Q Consensus 176 G~~~~ltVDHIiP~S~GG~-~tweNLV~aC~~CN~ 209 (269)
|....++++|+.|.+.||. .+.+||+..-..-|.
T Consensus 166 G~R~kfELHH~~~I~~GG~VYDiDNLrI~TPK~Hi 200 (206)
T 7cei_B 166 GKRTSFELHHEKPISQNGGVYDMDNISVVTPKRHI 200 (206)
T ss_dssp TTBCBCEEEESSCSSSSCCSSBTTSEEEECHHHHH
T ss_pred CCeeeEEeecCcccccCCeeecccceeecChHHHH
Confidence 4445789999999999998 899999887665554
No 8
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=35.60 E-value=11 Score=33.22 Aligned_cols=49 Identities=31% Similarity=0.461 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHCC-----CccccCCCC------CCCccceeeecCCCCCcchhhHHHhchhhhcCcC
Q 024302 157 NNLSRKNLMYRDN-----FTCQYCSSR------ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 212 (269)
Q Consensus 157 ~~~~R~~Vl~RD~-----~~C~YCG~~------~~ltVDHIiP~S~GG~~tweNLV~aC~~CN~~Kg 212 (269)
....++.+++.++ ++|+.|+.+ ..+.+||=-- .|. .. -.+|..||..-|
T Consensus 120 T~eey~~L~e~Qg~~~~~G~C~ICg~~~~~~~~k~lvVDHDH~---TG~--VR--GlLC~~CN~~LG 179 (200)
T 3gox_A 120 SSTEKKKMDEIAPPKGSVFTCPICEKRSIVGVTANLVHDHNHD---TGW--GR--EWICDSCNTGLG 179 (200)
T ss_dssp CHHHHHHHHTTCCCTTCEEECTTTCCEEEBTTTBCEEEEECTT---TCC--EE--EEEEHHHHHHHH
T ss_pred CHHHHHHHHHHcccCCCCCcCcCCCCCCCcCcccceeeecccC---CCc--Ee--cccchhhcchhc
Confidence 4678888999999 999999986 2377888532 222 11 158999997543
No 9
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=19.01 E-value=24 Score=29.33 Aligned_cols=7 Identities=0% Similarity=0.183 Sum_probs=2.6
Q ss_pred ccccccc
Q 024302 65 KFSVDAS 71 (269)
Q Consensus 65 ~~~~~~~ 71 (269)
.|+..|+
T Consensus 136 ~y~~~~r 142 (169)
T 1ayz_A 136 QYVKRVK 142 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3433333
No 10
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=14.75 E-value=31 Score=23.31 Aligned_cols=38 Identities=16% Similarity=0.489 Sum_probs=23.7
Q ss_pred CCCccccCCCCCCCccceeeecCCCCCcchhhHHH--hchhhhcCcCC
Q 024302 168 DNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVA--ACFKCNSRKGK 213 (269)
Q Consensus 168 D~~~C~YCG~~~~ltVDHIiP~S~GG~~tweNLV~--aC~~CN~~Kg~ 213 (269)
..+.|..||-. .--..|..+.|+.|-- .|..|...|..
T Consensus 3 ~~y~C~vCGyv--------yd~~~Gd~t~f~~lP~dw~CP~Cg~~k~~ 42 (46)
T 6rxn_A 3 QKYVCNVCGYE--------YDPAEHDNVPFDQLPDDWCCPVCGVSKDQ 42 (46)
T ss_dssp CCEEETTTCCE--------ECGGGGTTCCGGGSCTTCBCTTTCCBGGG
T ss_pred CEEECCCCCeE--------EeCCcCCCcchhhCCCCCcCcCCCCcHHH
Confidence 34789999832 2223343366766644 89999887754
Done!