Query 024303
Match_columns 269
No_of_seqs 159 out of 1103
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:35:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00193 expansin-A; Provision 100.0 7.6E-64 1.6E-68 449.9 27.7 217 37-267 26-256 (256)
2 PLN03023 Expansin-like B1; Pro 100.0 9.2E-64 2E-68 447.3 26.5 223 37-268 21-247 (247)
3 PLN00050 expansin A; Provision 100.0 1.6E-62 3.4E-67 439.7 25.4 216 37-267 21-247 (247)
4 COG4305 Endoglucanase C-termin 100.0 2.7E-28 5.9E-33 205.6 18.6 199 38-268 27-231 (232)
5 PLN03024 Putative EG45-like do 100.0 5.2E-28 1.1E-32 196.9 13.3 120 1-161 1-125 (125)
6 PLN00115 pollen allergen group 99.9 5.3E-25 1.2E-29 177.2 11.5 93 169-267 24-118 (118)
7 PF01357 Pollen_allerg_1: Poll 99.9 3.4E-23 7.3E-28 157.4 10.0 80 171-252 1-82 (82)
8 smart00837 DPBB_1 Rare lipopro 99.9 9.5E-23 2.1E-27 156.5 6.9 76 77-159 1-87 (87)
9 PF03330 DPBB_1: Rare lipoprot 99.8 6.4E-19 1.4E-23 132.1 6.6 72 77-159 1-78 (78)
10 PF00967 Barwin: Barwin family 99.2 1E-11 2.2E-16 98.6 4.9 64 87-164 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.2 1.4E-05 2.9E-10 64.8 9.0 73 72-163 40-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.9 0.0001 2.3E-09 64.8 11.0 95 44-167 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.9 7.6E-05 1.6E-09 66.7 10.1 70 75-165 109-178 (233)
14 PRK10672 rare lipoprotein A; P 97.2 0.0048 1E-07 58.7 11.4 93 42-162 79-171 (361)
15 PF02015 Glyco_hydro_45: Glyco 93.1 0.12 2.6E-06 45.5 4.1 54 77-135 70-123 (201)
16 PF07172 GRP: Glycine rich pro 64.0 5.9 0.00013 30.8 2.4 28 1-28 1-28 (95)
17 PF12863 DUF3821: Domain of un 55.8 89 0.0019 27.8 8.6 95 128-247 48-146 (209)
18 PF03404 Mo-co_dimer: Mo-co ox 48.6 31 0.00067 28.2 4.3 20 194-213 39-60 (131)
19 TIGR02588 conserved hypothetic 45.3 1E+02 0.0022 25.2 6.7 66 170-238 35-118 (122)
20 cd02854 Glycogen_branching_enz 42.8 61 0.0013 25.1 5.0 50 197-247 16-77 (99)
21 PRK10564 maltose regulon perip 39.1 70 0.0015 30.1 5.5 47 218-268 80-128 (303)
22 cd02110 SO_family_Moco_dimer S 39.0 92 0.002 29.2 6.4 48 195-244 236-293 (317)
23 cd02859 AMPKbeta_GBD_like AMP- 36.0 1.3E+02 0.0027 22.0 5.6 49 196-248 11-62 (79)
24 PLN00115 pollen allergen group 34.8 27 0.0006 28.3 1.9 18 1-19 1-18 (118)
25 COG2372 CopC Uncharacterized p 31.8 74 0.0016 26.2 3.9 27 150-177 97-126 (127)
26 PF05887 Trypan_PARP: Procycli 29.8 17 0.00038 30.1 0.0 20 1-20 1-20 (143)
27 PRK10301 hypothetical protein; 28.7 89 0.0019 25.2 4.0 26 150-176 96-124 (124)
28 PF10417 1-cysPrx_C: C-termina 26.4 38 0.00082 22.0 1.1 11 249-259 10-20 (40)
29 PF04234 CopC: CopC domain; I 22.1 1E+02 0.0022 23.4 3.1 26 150-176 69-97 (97)
30 COG3895 Predicted periplasmic 21.3 1.2E+02 0.0025 24.5 3.2 29 231-264 53-81 (112)
31 PRK13159 cytochrome c-type bio 21.3 1E+02 0.0023 26.2 3.1 30 231-261 73-103 (155)
32 PF02922 CBM_48: Carbohydrate- 20.9 2.2E+02 0.0048 20.3 4.6 50 197-247 22-80 (85)
33 cd02855 Glycogen_branching_enz 20.9 3.1E+02 0.0067 20.3 5.6 49 210-263 49-99 (106)
34 cd02113 bact_SoxC_Moco bacteri 20.2 2.6E+02 0.0056 26.5 5.9 28 186-213 227-257 (326)
35 cd02114 bact_SorA_Moco sulfite 20.2 1.9E+02 0.0042 27.8 5.1 48 195-243 288-344 (367)
No 1
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=7.6e-64 Score=449.90 Aligned_cols=217 Identities=34% Similarity=0.736 Sum_probs=200.4
Q ss_pred CCCCeeEEEEEEeCCCCCCCCCcCcCCCCCCCCCCCCCCeEEEeCccccCCCCcCCcEEEEEEC---CCCCCC-CCcEEE
Q 024303 37 VGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCT---RHPACS-GKAVRV 112 (269)
Q Consensus 37 ~~~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~---~~~~C~-g~sv~V 112 (269)
..++|.+++|||||++|+.++++|||||++ +...+++.++||+|+++|++|+.||+||||+|. +++.|. +++|+|
T Consensus 26 ~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~-l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~V 104 (256)
T PLN00193 26 TPSGWTKAHATFYGGSDASGTMGGACGYGN-LYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTI 104 (256)
T ss_pred CCCCceeeEEEEcCCCCCCCCCCcccCCCC-ccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEE
Confidence 455899999999999998889999999998 566889999999999999999999999999994 456785 459999
Q ss_pred EEeecCCCC---------CCCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEEecCCCCceEEEEEccCCCCce
Q 024303 113 VITDFCPGG---------PCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNY 183 (269)
Q Consensus 113 ~V~D~Cp~~---------~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g~ni~~~v~~Gss~~w 183 (269)
+|||+||++ ||.+++.|||||.+||.+||. ++.|+++|+||+|+|+++| ||+|+++ +++||
T Consensus 105 t~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~-------~~~Giv~V~yrRVpC~~~G-~i~f~v~--gn~y~ 174 (256)
T PLN00193 105 TATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI-------YRGGIVPVLFQRVPCKKHG-GVRFTIN--GRDYF 174 (256)
T ss_pred EEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeEeEEEEEeccccCC-CcEEEEc--CCccE
Confidence 999999962 898888999999999999997 6899999999999999999 9999998 38999
Q ss_pred eEEEEEEecCCCceeEEEEEcCCCceEEcccccCceeeeCCCCCCCC-CeEEEEEEeeCCeEEEEcccccCCCCCCcEEe
Q 024303 184 LAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELHP-PLSLRLTSQYSGQTLVANNVIPQGWMPGATYR 262 (269)
Q Consensus 184 ~av~v~n~~g~g~I~sVei~~~~~~W~~m~r~~g~~W~~~~~~~~~g-p~~~RiTs~~~G~~v~~~nvip~~~~~G~~y~ 262 (269)
++|+|.|++|+++|++|+|++++++|++|+|+||++|+++.. +.+ ||+||||+ .+|+++++.||||++|++|++|+
T Consensus 175 ~~vlv~nv~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~--l~g~plsfRvts-~~G~~~~~~~viPa~W~~G~ty~ 251 (256)
T PLN00193 175 ELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAY--LDGQSLSFKVTT-TDGQTRFFLNVVPANWGFGQTFS 251 (256)
T ss_pred EEEEEEEeCCCccEEEEEEecCCCCeeECcccccceeEecCC--CCCCCEEEEEEE-cCCeEEEECceeCCCCCCCCeEe
Confidence 999999999999999999999867899999999999999863 555 99999999 99999999999999999999999
Q ss_pred cCccc
Q 024303 263 SLVNY 267 (269)
Q Consensus 263 t~~qF 267 (269)
+.+||
T Consensus 252 s~vqf 256 (256)
T PLN00193 252 SSVQF 256 (256)
T ss_pred cCccC
Confidence 99998
No 2
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=9.2e-64 Score=447.30 Aligned_cols=223 Identities=37% Similarity=0.761 Sum_probs=204.6
Q ss_pred CCCCeeEEEEEEeCCCCCCCCCcCcCCCCCCCCCCCCCCeEEEeCccccCCCCcCCcEEEEEECCCCCCCCCcEEEEEee
Q 024303 37 VGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITD 116 (269)
Q Consensus 37 ~~~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D 116 (269)
..++|.+++|||||++++.|+++|||||++ +....++.++||++ ++|++|+.||+||||+|.+++.|.+++|+|+|||
T Consensus 21 ~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~-~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~~~~C~~~~v~V~iTd 98 (247)
T PLN03023 21 KSQDFTYSRATYYGSPDCLGTPTGACGFGE-YGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAPNLCSDDGVNVVVTD 98 (247)
T ss_pred hcCCcccceEEEeCCCCCCCCCCccccCCc-cccCCCcceeeeeh-hhhcCCchhcccEEeecCCCCccCCCCeEEEEEe
Confidence 455799999999999999999999999999 66677888999998 9999999999999999998889999999999999
Q ss_pred cCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEEecCCCCceEEEEEccCCC-CceeEEEEEEecCCC
Q 024303 117 FCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSN-PNYLAVVVEFEDGDG 195 (269)
Q Consensus 117 ~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g~ni~~~v~~Gss-~~w~av~v~n~~g~g 195 (269)
.||. + +.|||||.+||.+||.|+++++|+..|+++|+||||||.++|.+|+|+|.++++ |+|++|+|.|++|++
T Consensus 99 ~~~~--~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~vlv~~vgG~G 173 (247)
T PLN03023 99 YGEG--D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIVMLYQAGQN 173 (247)
T ss_pred CCCC--C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEEEEEEcCCCc
Confidence 9984 2 689999999999999999999999999999999999999998889999999996 999999999999999
Q ss_pred ceeEEEEEcC-CCceEEcccccCceeeeCCCCCCCCCeEEEEEEe-eCCeE-EEEcccccCCCCCCcEEecCcccc
Q 024303 196 DLAGVDVKEG-SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQ-YSGQT-LVANNVIPQGWMPGATYRSLVNYN 268 (269)
Q Consensus 196 ~I~sVei~~~-~~~W~~m~r~~g~~W~~~~~~~~~gp~~~RiTs~-~~G~~-v~~~nvip~~~~~G~~y~t~~qF~ 268 (269)
+|++||||++ +.+|++|+|+||++|+++. ++.+|++||++.. .+|++ |+++||||++|++|++|++++||.
T Consensus 174 dI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~--~l~Gp~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~vq~~ 247 (247)
T PLN03023 174 DILAVEIWQEDCKEWRGMRKAYGAVWDMPN--PPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNIQLD 247 (247)
T ss_pred cEEEEEEEecCCCCceECccCCcceeEcCC--CCCCceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEecccccC
Confidence 9999999996 6789999999999999975 5899888888651 36654 889999999999999999999995
No 3
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=1.6e-62 Score=439.71 Aligned_cols=216 Identities=36% Similarity=0.796 Sum_probs=199.5
Q ss_pred CCCCeeEEEEEEeCCCCCCCCCcCcCCCCCCCCCCCCCCeEEEeCccccCCCCcCCcEEEEEECCC-CCCCCCcEEEEEe
Q 024303 37 VGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRH-PACSGKAVRVVIT 115 (269)
Q Consensus 37 ~~~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~-~~C~g~sv~V~V~ 115 (269)
+..+|.+++|||||++++.|+++|||||++ +...+++.++||+|+.+|++|+.||+||||+|.+. ..|.+++|+|+||
T Consensus 21 ~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~-l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gsV~V~it 99 (247)
T PLN00050 21 YGSGWTGAHATFYGGGDASGTMGGACGYGN-LYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITAT 99 (247)
T ss_pred cCCCccccEEEEcCCCCCCCCCCcccCCCC-ccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCcEEEEEe
Confidence 456899999999999999899999999999 56678999999999999999999999999999653 4698889999999
Q ss_pred ecCCC---------CCCCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEEecCCCCceEEEEEccCCCCceeEE
Q 024303 116 DFCPG---------GPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAV 186 (269)
Q Consensus 116 D~Cp~---------~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g~ni~~~v~~Gss~~w~av 186 (269)
|+||+ +||.+++.|||||.+||.+||. ++.|+++|+||+|||+++| ||+|++++ ++||++|
T Consensus 100 d~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~-------~~aGii~V~yRRVpC~~~G-~i~f~v~g--~sy~~~v 169 (247)
T PLN00050 100 NFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ-------YKAGIVPVQYRRVACRKSG-GIRFTING--HSYFNLV 169 (247)
T ss_pred cCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeeeeEEEEecCcCCC-CeEEEEcC--CceeEEE
Confidence 99996 2898889999999999999998 6899999999999999998 99999985 4599999
Q ss_pred EEEEecCCCceeEEEEEcCCCceEEcccccCceeeeCCCCCCCC-CeEEEEEEeeCCeEEEEcccccCCCCCCcEEecCc
Q 024303 187 VVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELHP-PLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLV 265 (269)
Q Consensus 187 ~v~n~~g~g~I~sVei~~~~~~W~~m~r~~g~~W~~~~~~~~~g-p~~~RiTs~~~G~~v~~~nvip~~~~~G~~y~t~~ 265 (269)
+|.|++|+++|++|+|+++.++|++|+|+||++|+++.. +.+ ||+||||+ .+|++++++||||++|++|++|++.
T Consensus 170 lv~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~--l~g~~lsfRvt~-~~G~~~~~~~V~Pa~W~~G~ty~~~- 245 (247)
T PLN00050 170 LITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSY--LNGQALSFKVTT-SDGRTVISNNAAPSNWAFGQTYTGM- 245 (247)
T ss_pred EEEEcCCCccEEEEEEecCCCCeeECccccCceeEccCC--CCCCcEEEEEEe-cCCcEEEECceeCCCCCCCCeEecC-
Confidence 999999999999999999766899999999999999873 555 99999999 9999999999999999999999995
Q ss_pred cc
Q 024303 266 NY 267 (269)
Q Consensus 266 qF 267 (269)
||
T Consensus 246 ~f 247 (247)
T PLN00050 246 QF 247 (247)
T ss_pred cC
Confidence 88
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.7e-28 Score=205.61 Aligned_cols=199 Identities=23% Similarity=0.315 Sum_probs=163.5
Q ss_pred CCCeeEEEEEEeCCCCCCCCCcCcCCCCCCCCCCCCCCeEEEeCccccCCC----CcCCcEEEEEECCCCCCCCCcEEEE
Q 024303 38 GTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSG----KECGACYQVKCTRHPACSGKAVRVV 113 (269)
Q Consensus 38 ~~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g----~~CG~C~~V~c~~~~~C~g~sv~V~ 113 (269)
=.+.++|.|||-+... .+||-- +++.|.+..+.|+|..+-+-| ++-|+.++|. +| ++.++|.
T Consensus 27 wd~~f~G~ATyTgsGY----sGGAfl----LDPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVq--GP----KG~TTVY 92 (232)
T COG4305 27 WDDLFEGYATYTGSGY----SGGAFL----LDPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQ--GP----KGKTTVY 92 (232)
T ss_pred cccccceeEEEecccc----cCceEE----ecCcCCcceeeecCHHHcccCCchhhhccceEEEE--CC----CCceEEE
Confidence 4456899999977643 367663 345677888999998877654 7899999999 77 5788999
Q ss_pred EeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEEecCCCCceEEEEEccCCCCceeEEEEEEecC
Q 024303 114 ITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDG 193 (269)
Q Consensus 114 V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g~ni~~~v~~Gss~~w~av~v~n~~g 193 (269)
|+|.-|+ -. ++.||||+.||.+|.+ +..|+++|+||.|+-|.+| |+.+++|+||+.||.+|||+||.-
T Consensus 93 VTDlYPe--ga--sGaLDLSpNAFakIGn-------m~qGrIpvqWrvv~aPvtG-N~~YRiKeGSs~WWAAIQVRnH~y 160 (232)
T COG4305 93 VTDLYPE--GA--SGALDLSPNAFAKIGN-------MKQGRIPVQWRVVKAPVTG-NFTYRIKEGSSRWWAAIQVRNHKY 160 (232)
T ss_pred Eeccccc--cc--ccccccChHHHhhhcc-------hhcCccceeEEEecccccc-cEEEEEecCCccceeeeeeecccC
Confidence 9999998 33 7899999999999998 7999999999999999999 999999999999999999999984
Q ss_pred CCceeEEEEEcCCCceEEcccccCceeeeCCCCCCCCCeEEEEEEeeCCeEEEEc-ccccCCCCC-CcEEecCcccc
Q 024303 194 DGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVAN-NVIPQGWMP-GATYRSLVNYN 268 (269)
Q Consensus 194 ~g~I~sVei~~~~~~W~~m~r~~g~~W~~~~~~~~~gp~~~RiTs~~~G~~v~~~-nvip~~~~~-G~~y~t~~qF~ 268 (269)
||.++|+.+ ++.|..|.+.+||.|.-.. ...+|+.+|+|+ +-|++++.. -.+|..-+. --+...++||+
T Consensus 161 --PV~KlE~~q-dg~WinlpK~dYNhFVgT~--LG~~pL~~RmTD-IRG~~l~DtlP~Lpk~asSKaY~V~G~VQFs 231 (232)
T COG4305 161 --PVMKLEYEQ-DGKWINLPKMDYNHFVGTN--LGTGPLKVRMTD-IRGKVLKDTLPKLPKSASSKAYTVPGHVQFS 231 (232)
T ss_pred --ceEEEEEec-CCeEeeccccccceeeccc--cCCCceEEEEee-cccceeecccccccccccCCceeecceeecC
Confidence 999999999 6899999999999887554 456899999999 999999864 233332221 11345677885
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.95 E-value=5.2e-28 Score=196.91 Aligned_cols=120 Identities=34% Similarity=0.613 Sum_probs=96.2
Q ss_pred CCccchhhHHHHHHHHHHHHhhcccccCCCCCccccCCCCeeEEEEEEeCCCCCCCCCcCcCCCCCCCCCCCCCCeEEEe
Q 024303 1 MATRSSISLSLSFFLAFLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAI 80 (269)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~ 80 (269)
|..|++|..++++++..++ ....|+||||++.+ .|+|+ ++ .+++.++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~--------------------~~~~G~AT~Y~~~~-----~gAC~-~~----~~~g~~iaAl 50 (125)
T PLN03024 1 MSKRILIFSTVLVFLFSVS--------------------YATPGIATFYTSYT-----PSACY-RG----TSFGVMIAAA 50 (125)
T ss_pred CceeeHHHHHHHHHHhhhh--------------------cccceEEEEeCCCC-----Ccccc-CC----CCCCCEeEEe
Confidence 6778877776633222222 23469999998653 58994 44 2468899999
Q ss_pred CccccCCCCcCCcEEEEEECCC-----CCCCCCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCcee
Q 024303 81 GPSLYKSGKECGACYQVKCTRH-----PACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVL 155 (269)
Q Consensus 81 s~~~~~~g~~CG~C~~V~c~~~-----~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~ 155 (269)
++.+|++|+.||+||||+|.++ ..|++++|+|+|+|+||++ |. .|||||++||.+||+ .+.|++
T Consensus 51 s~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~CP~~-C~---~~~DLS~~AF~~iA~-------~~aG~v 119 (125)
T PLN03024 51 SDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHCPSG-CA---STLDLSREAFAQIAN-------PVAGII 119 (125)
T ss_pred CHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEcCCCCC-CC---CceEcCHHHHHHhcC-------ccCCEE
Confidence 9999999999999999999765 3689999999999999941 66 599999999999998 578999
Q ss_pred eeEEEE
Q 024303 156 EVRYAR 161 (269)
Q Consensus 156 ~i~wr~ 161 (269)
+|+|.+
T Consensus 120 ~V~y~~ 125 (125)
T PLN03024 120 NIDYIP 125 (125)
T ss_pred EEEEeC
Confidence 999974
No 6
>PLN00115 pollen allergen group 3; Provisional
Probab=99.92 E-value=5.3e-25 Score=177.21 Aligned_cols=93 Identities=27% Similarity=0.548 Sum_probs=85.9
Q ss_pred ceEEEEEccCCCCceeEEEEEEecCCCceeEEEEEcC-CCceE-EcccccCceeeeCCCCCCCCCeEEEEEEeeCCeEEE
Q 024303 169 RNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEG-SGEWR-AMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLV 246 (269)
Q Consensus 169 ~ni~~~v~~Gss~~w~av~v~n~~g~g~I~sVei~~~-~~~W~-~m~r~~g~~W~~~~~~~~~gp~~~RiTs~~~G~~v~ 246 (269)
.+|.|+|.+|||+|||+|.+ | ++|.+|||++. +.+|+ +|+|+||++|+++++.|+.|||+||+|+ .+|++++
T Consensus 24 ~~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~GPlS~R~t~-~~G~~~v 97 (118)
T PLN00115 24 TEVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKGPFSVRFLV-KGGGYRV 97 (118)
T ss_pred CceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCCceEEEEEE-eCCCEEE
Confidence 48999999999999998876 3 37999999998 56899 9999999999998766789999999999 9999999
Q ss_pred EcccccCCCCCCcEEecCccc
Q 024303 247 ANNVIPQGWMPGATYRSLVNY 267 (269)
Q Consensus 247 ~~nvip~~~~~G~~y~t~~qF 267 (269)
++||||++|++|++|++++||
T Consensus 98 a~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 98 VDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred ECceECCCCCCCCEEeccccC
Confidence 999999999999999999997
No 7
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.89 E-value=3.4e-23 Score=157.35 Aligned_cols=80 Identities=53% Similarity=0.939 Sum_probs=66.9
Q ss_pred EEEEEccCCCCceeEEEEEEecCCCceeEEEEEcC-CCceEEcccccCceeeeCCCCCCCCCeEEEEEEeeC-CeEEEEc
Q 024303 171 IAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEG-SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYS-GQTLVAN 248 (269)
Q Consensus 171 i~~~v~~Gss~~w~av~v~n~~g~g~I~sVei~~~-~~~W~~m~r~~g~~W~~~~~~~~~gp~~~RiTs~~~-G~~v~~~ 248 (269)
|+|+|+++|++||++|+|.|++|.++|++|||+++ +++|++|+|+||++|++++ +++.+||+||||+ .+ |++++++
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~-~~~~~pls~Rvts-~~~G~~vv~~ 78 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDS-NPPGGPLSFRVTS-GDSGQTVVAD 78 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE--SS--SSEEEEEEE-TTTSEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECC-CCcCCCEEEEEEE-cCCCeEEEEe
Confidence 68999999999999999999999999999999987 5679999999999999986 4788999999999 66 9999999
Q ss_pred cccc
Q 024303 249 NVIP 252 (269)
Q Consensus 249 nvip 252 (269)
||||
T Consensus 79 nViP 82 (82)
T PF01357_consen 79 NVIP 82 (82)
T ss_dssp EEE-
T ss_pred cccC
Confidence 9998
No 8
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.87 E-value=9.5e-23 Score=156.46 Aligned_cols=76 Identities=37% Similarity=0.801 Sum_probs=68.4
Q ss_pred EEEeCccccCCCCcCCcEEEEEEC-CCCCCCC-CcEEEEEeecCCCC---------CCCCCCCcEEcChHHHhhcccCCc
Q 024303 77 VTAIGPSLYKSGKECGACYQVKCT-RHPACSG-KAVRVVITDFCPGG---------PCVSESAHFDLSGTAFGAMAIPGQ 145 (269)
Q Consensus 77 ~aA~s~~~~~~g~~CG~C~~V~c~-~~~~C~g-~sv~V~V~D~Cp~~---------~C~~~~~~lDLs~~AF~~ia~~~~ 145 (269)
+||+|+.+|++|+.||+||||+|. +++.|.+ ++|+|+|+|+||++ ||.+++.|||||.+||.+||.
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~--- 77 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQ--- 77 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhh---
Confidence 479999999999999999999996 4667875 59999999999973 898778999999999999998
Q ss_pred ccccccCceeeeEE
Q 024303 146 EEKLRDAGVLEVRY 159 (269)
Q Consensus 146 ~~~~~~~G~~~i~w 159 (269)
++.|+|+|+|
T Consensus 78 ----~~~Gvi~v~y 87 (87)
T smart00837 78 ----YKAGIVPVKY 87 (87)
T ss_pred ----hcCCEEeeEC
Confidence 6899999987
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.77 E-value=6.4e-19 Score=132.12 Aligned_cols=72 Identities=44% Similarity=0.857 Sum_probs=61.2
Q ss_pred EEEeCccccCCCCcCCcEEEEEEC--CCCC--CCC--CcEEEEEeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccc
Q 024303 77 VTAIGPSLYKSGKECGACYQVKCT--RHPA--CSG--KAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLR 150 (269)
Q Consensus 77 ~aA~s~~~~~~g~~CG~C~~V~c~--~~~~--C~g--~sv~V~V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~ 150 (269)
+||++..+|++|..||+||+++|. .... |.. ++|+|+|+|+||+ |. .+|||||+.||++|+. .
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~--~~--~~~lDLS~~aF~~la~-------~ 69 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG--CP--PNHLDLSPAAFKALAD-------P 69 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT--SS--SSEEEEEHHHHHHTBS-------T
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC--Cc--CCEEEeCHHHHHHhCC-------C
Confidence 589999999999999999999993 2333 766 9999999999999 88 7999999999999998 5
Q ss_pred cCceeeeEE
Q 024303 151 DAGVLEVRY 159 (269)
Q Consensus 151 ~~G~~~i~w 159 (269)
+.|+++|+|
T Consensus 70 ~~G~i~V~w 78 (78)
T PF03330_consen 70 DAGVIPVEW 78 (78)
T ss_dssp TCSSEEEEE
T ss_pred CceEEEEEC
Confidence 899999999
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.23 E-value=1e-11 Score=98.62 Aligned_cols=64 Identities=36% Similarity=0.619 Sum_probs=47.5
Q ss_pred CCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEEec
Q 024303 87 SGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVAC 164 (269)
Q Consensus 87 ~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C 164 (269)
+...||+|++||.+. ++.+++|+|+|+|+. ++|||.+.+|++|-..|+| ...|.+.|.|++|+|
T Consensus 56 gq~~CGkClrVTNt~----tga~~~~RIVDqCsn-------GGLDld~~vF~~iDtdG~G---~~~Ghl~V~y~fV~C 119 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTA----TGAQVTVRIVDQCSN-------GGLDLDPTVFNQIDTDGQG---YAQGHLIVDYEFVDC 119 (119)
T ss_dssp SGGGTT-EEEEE-TT----T--EEEEEEEEE-SS-------SSEES-SSSHHHH-SSSHH---HHHTEEEEEEEEE--
T ss_pred CcccccceEEEEecC----CCcEEEEEEEEcCCC-------CCcccChhHHhhhccCCcc---cccceEEEEEEEEcC
Confidence 457899999999543 478999999999875 5799999999999876555 688999999999999
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.16 E-value=1.4e-05 Score=64.83 Aligned_cols=73 Identities=19% Similarity=0.471 Sum_probs=50.4
Q ss_pred CCCCeEEEeCc-cccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccc
Q 024303 72 PFSSFVTAIGP-SLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLR 150 (269)
Q Consensus 72 p~~~~~aA~s~-~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~ 150 (269)
|.-..+.+... .-| ++..||.|+|++-. +++|.|..+|.=+ ..|+|+.+||+.|.+. ++ .
T Consensus 40 p~Fp~IGg~~~V~gW-nS~~CGtC~~lty~------g~si~vlaID~a~--------~gfnis~~A~n~LT~g-~a---~ 100 (119)
T PF07249_consen 40 PNFPYIGGAPAVAGW-NSPNCGTCWKLTYN------GRSIYVLAIDHAG--------GGFNISLDAMNDLTNG-QA---V 100 (119)
T ss_dssp TTTTSEEEETT--ST-T-TTTT-EEEEEET------TEEEEEEEEEE-S--------SSEEE-HHHHHHHHTS--C---C
T ss_pred CCCCeeccccccccC-CCCCCCCeEEEEEC------CeEEEEEEEecCC--------CcccchHHHHHHhcCC-cc---c
Confidence 33345666654 456 56899999999962 6899999999943 3599999999999873 22 5
Q ss_pred cCceeeeEEEEEe
Q 024303 151 DAGVLEVRYARVA 163 (269)
Q Consensus 151 ~~G~~~i~wr~V~ 163 (269)
..|+|+++|++|+
T Consensus 101 ~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 101 ELGRVDATYTQVD 113 (119)
T ss_dssp CC-EEE-EEEEE-
T ss_pred ceeEEEEEEEEcC
Confidence 6799999999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.95 E-value=0.0001 Score=64.82 Aligned_cols=95 Identities=24% Similarity=0.271 Sum_probs=69.8
Q ss_pred EEEEEeCCC-CCCCCCcCcCCCCCCCCCCCCCCeEEEeCccccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCC
Q 024303 44 AGATWYGSP-DGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGP 122 (269)
Q Consensus 44 G~aT~Yg~~-~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~ 122 (269)
|.|+|||.. .|. .-|+|-.- ....+.||-.+- -.|..++|+... ++++|+|+|.|++|-
T Consensus 1 G~ASwYg~~f~G~---~TAnGe~y-----~~~~~tAAHktL------PlgT~V~VtNl~----ngrsviVrVnDRGPf-- 60 (208)
T TIGR00413 1 GLASWYGPKFHGR---KTANGEVY-----NMKALTAAHKTL------PFNTYVKVTNLH----NNRSVIVRINDRGPF-- 60 (208)
T ss_pred CEEeEeCCCCCCC---cCCCCeec-----CCCccccccccC------CCCCEEEEEECC----CCCEEEEEEeCCCCC--
Confidence 679999863 221 34443221 123456665543 568899999654 489999999999996
Q ss_pred CCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEEecCCC
Q 024303 123 CVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYS 167 (269)
Q Consensus 123 C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~ 167 (269)
.+..-+|||..|+.+|.. ...|+.+|+.+.+.....
T Consensus 61 --~~gRiIDLS~aAA~~Lg~-------~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 61 --SDDRIIDLSHAAAREIGL-------ISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred --CCCCEEECCHHHHHHcCC-------CcCceEEEEEEEEecCCC
Confidence 235789999999999987 689999999999987753
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.93 E-value=7.6e-05 Score=66.74 Aligned_cols=70 Identities=26% Similarity=0.280 Sum_probs=56.8
Q ss_pred CeEEEeCccccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCce
Q 024303 75 SFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGV 154 (269)
Q Consensus 75 ~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~ 154 (269)
.++||-.+--+ |.-++||..+ ++++|+|+|.|++| +.. ...+|||..|+++|+. ...|+
T Consensus 109 ~~tAAH~TLP~------~t~v~VtNl~----NgrsvvVRINDRGP---f~~-gRiIDlS~aAA~~l~~-------~~~G~ 167 (233)
T COG0797 109 ALTAAHKTLPL------PTYVRVTNLD----NGRSVVVRINDRGP---FVS-GRIIDLSKAAADKLGM-------IRSGV 167 (233)
T ss_pred ccccccccCCC------CCEEEEEEcc----CCcEEEEEEeCCCC---CCC-CcEeEcCHHHHHHhCC-------ccCce
Confidence 45666654444 5689999665 38999999999999 554 4689999999999987 68999
Q ss_pred eeeEEEEEecC
Q 024303 155 LEVRYARVACD 165 (269)
Q Consensus 155 ~~i~wr~V~C~ 165 (269)
.+|+.+.+.+.
T Consensus 168 a~V~i~~l~~~ 178 (233)
T COG0797 168 AKVRIEVLGVA 178 (233)
T ss_pred EEEEEEEeccc
Confidence 99999999876
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.16 E-value=0.0048 Score=58.68 Aligned_cols=93 Identities=18% Similarity=0.138 Sum_probs=62.3
Q ss_pred eEEEEEEeCCCCCCCCCcCcCCCCCCCCCCCCCCeEEEeCccccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCC
Q 024303 42 STAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGG 121 (269)
Q Consensus 42 ~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~ 121 (269)
..|.|+|||..-. | ..-+.|-.. ....+.||..+- --|..++||... +|++|+|+|.|++|-
T Consensus 79 ~~G~ASwYg~~f~-G-~~TA~Ge~~-----~~~~~tAAH~tL------Plps~vrVtNl~----ngrsvvVrVnDRGP~- 140 (361)
T PRK10672 79 QAGLAAIYDAEAG-S-NLTASGERF-----DPNALTAAHPTL------PIPSYVRVTNLA----NGRMIVVRINDRGPY- 140 (361)
T ss_pred eEEEEEEeCCccC-C-CcCcCceee-----cCCcCeeeccCC------CCCCEEEEEECC----CCcEEEEEEeCCCCC-
Confidence 3789999986421 0 122222111 123456666543 347899999655 489999999999995
Q ss_pred CCCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEE
Q 024303 122 PCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARV 162 (269)
Q Consensus 122 ~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V 162 (269)
.+..-+|||..|+++|.. ...+.+.|+.-.|
T Consensus 141 ---~~gRiiDLS~aAA~~Lg~-------~~~~~V~ve~i~v 171 (361)
T PRK10672 141 ---GPGRVIDLSRAAADRLNT-------SNNTKVRIDPIIV 171 (361)
T ss_pred ---CCCCeeEcCHHHHHHhCC-------CCCceEEEEEEee
Confidence 235789999999999986 3456667766665
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=93.09 E-value=0.12 Score=45.47 Aligned_cols=54 Identities=26% Similarity=0.302 Sum_probs=33.6
Q ss_pred EEEeCccccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChH
Q 024303 77 VTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGT 135 (269)
Q Consensus 77 ~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~~ 135 (269)
+||.+-.-......|++|||++=++. .-.+|+.+|+|++.=-+ -..+||||-.+
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g-~l~GKkmiVQ~tNtG~d----lg~n~FDl~iP 123 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSG-PLKGKKMIVQVTNTGGD----LGSNQFDLAIP 123 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SS-TTTT-EEEEEEEEE-TT----TTTTEEEEE-T
T ss_pred eeeeeecCCCCCCcccceEEEEEcCC-CcCCCEeEEEecccCCC----CCCCeEEEEeC
Confidence 56665332233478999999997752 23589999999999764 33789998764
No 16
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=64.04 E-value=5.9 Score=30.84 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=14.1
Q ss_pred CCccchhhHHHHHHHHHHHHhhcccccC
Q 024303 1 MATRSSISLSLSFFLAFLCYLELCSCFY 28 (269)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (269)
|+|++.+++.|+..++||....+.++.+
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 8888866665543222222233444444
No 17
>PF12863 DUF3821: Domain of unknown function (DUF3821); InterPro: IPR024277 This is a domain largely confined to sequences from Methanomicrobiales. It is found in putative lipases but the function is unknown.
Probab=55.79 E-value=89 Score=27.82 Aligned_cols=95 Identities=24% Similarity=0.310 Sum_probs=51.0
Q ss_pred CcEEcChHHHhhcccCCcccccccCceeeeEEEEEecCCCCceEEEEEccCCCCceeEEEEEEecCCCceeEEEEEcC-C
Q 024303 128 AHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEG-S 206 (269)
Q Consensus 128 ~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g~ni~~~v~~Gss~~w~av~v~n~~g~g~I~sVei~~~-~ 206 (269)
.+|.++|++|..-.+ . |..-+=...+ .+.|.|++-+ ++|.|.+.....+|..=.|... .
T Consensus 48 ~~FyV~P~~f~~~tG-----------~----WY~~~~~~~~-~~aF~V~~Ps----l~l~v~d~~t~~dvt~~~V~~G~~ 107 (209)
T PF12863_consen 48 TNFYVSPAAFGGKTG-----------N----WYQWNGTPKG-DVAFYVQDPS----LSLKVWDANTDKDVTGKTVPRGDN 107 (209)
T ss_pred cCEEEChHHhCCccc-----------c----eEecCCCCCc-ceEEEEeCCc----eEEEEEeccccccccCceeccCCe
Confidence 589999999876443 2 3332222223 6899999875 7788877654334433333221 0
Q ss_pred CceEEcccccCceeeeC---CCCCCCCCeEEEEEEeeCCeEEEE
Q 024303 207 GEWRAMQQSWGATWKLN---AGSELHPPLSLRLTSQYSGQTLVA 247 (269)
Q Consensus 207 ~~W~~m~r~~g~~W~~~---~~~~~~gp~~~RiTs~~~G~~v~~ 247 (269)
-+++ -+-|.+.+. +..+..++++|+|++ -+|.+.+.
T Consensus 108 v~Fr----I~tNL~~~~~R~g~~~~~~~v~I~V~~-P~G~~~t~ 146 (209)
T PF12863_consen 108 VNFR----IDTNLYSIFQRGGYTPGDGPVDIKVTT-PSGATYTS 146 (209)
T ss_pred EEEE----EcccHHHHhhcCCCCCCcceEEEEEeC-CCCcEEEE
Confidence 0111 111222221 111223469999999 88877654
No 18
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=48.55 E-value=31 Score=28.19 Aligned_cols=20 Identities=25% Similarity=0.581 Sum_probs=14.3
Q ss_pred CC-ceeEEEEEcC-CCceEEcc
Q 024303 194 DG-DLAGVDVKEG-SGEWRAMQ 213 (269)
Q Consensus 194 ~g-~I~sVei~~~-~~~W~~m~ 213 (269)
.+ +|.+|||... +.+|++..
T Consensus 39 ~g~~I~rVEVS~DgG~tW~~A~ 60 (131)
T PF03404_consen 39 GGRGIARVEVSTDGGKTWQEAT 60 (131)
T ss_dssp TT--EEEEEEESSTTSSEEE-E
T ss_pred CCcceEEEEEEeCCCCCcEEeE
Confidence 35 7999999988 55798654
No 19
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=45.33 E-value=1e+02 Score=25.25 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=40.7
Q ss_pred eEEEEEcc----CCCCceeEEEEEEecCCCceeEEEEEcC---CC---ceE-----Ecccc---cCceeeeCCCCCCCCC
Q 024303 170 NIAFHVDQ----GSNPNYLAVVVEFEDGDGDLAGVDVKEG---SG---EWR-----AMQQS---WGATWKLNAGSELHPP 231 (269)
Q Consensus 170 ni~~~v~~----Gss~~w~av~v~n~~g~g~I~sVei~~~---~~---~W~-----~m~r~---~g~~W~~~~~~~~~gp 231 (269)
.+.+.+++ ...+||.-+.|.|.++ ...++|+|.+. ++ ++. -+.+. .| .+..... |-++.
T Consensus 35 ~l~v~~~~~~r~~~gqyyVpF~V~N~gg-~TAasV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G-~~IF~~d-P~~g~ 111 (122)
T TIGR02588 35 VLEVAPAEVERMQTGQYYVPFAIHNLGG-TTAAAVNIRGELRQAGAVVENAEVTIDYLASGSKENG-TLIFRSD-PRNGQ 111 (122)
T ss_pred eEEEeehheeEEeCCEEEEEEEEEeCCC-cEEEEEEEEEEEccCCceeEEeeEEEEEcCCCCeEeE-EEEEccC-cccCe
Confidence 45555443 2357999999999987 57999999987 11 121 22222 23 2333332 45678
Q ss_pred eEEEEEE
Q 024303 232 LSLRLTS 238 (269)
Q Consensus 232 ~~~RiTs 238 (269)
+.||+.+
T Consensus 112 L~irv~g 118 (122)
T TIGR02588 112 LRLRVAG 118 (122)
T ss_pred EEEEEEe
Confidence 8888877
No 20
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=42.79 E-value=61 Score=25.06 Aligned_cols=50 Identities=14% Similarity=0.306 Sum_probs=33.4
Q ss_pred eeEEEEEcCCCceE----EcccccCceeeeCCCCC-------CC-CCeEEEEEEeeCCeEEEE
Q 024303 197 LAGVDVKEGSGEWR----AMQQSWGATWKLNAGSE-------LH-PPLSLRLTSQYSGQTLVA 247 (269)
Q Consensus 197 I~sVei~~~~~~W~----~m~r~~g~~W~~~~~~~-------~~-gp~~~RiTs~~~G~~v~~ 247 (269)
-++|+|.+.-.+|. +|.|...-.|++.-... .. ..+++||+. .+|+++..
T Consensus 16 A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~-~~G~~~~~ 77 (99)
T cd02854 16 AEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVT-PSGEWIDR 77 (99)
T ss_pred CCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEe-CCCCEEEE
Confidence 46777777645664 48886666997753211 13 389999999 88887643
No 21
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.14 E-value=70 Score=30.13 Aligned_cols=47 Identities=32% Similarity=0.400 Sum_probs=31.3
Q ss_pred ceeeeCCCCCCCCCeEEEEEEeeCCeEEEEcc--cccCCCCCCcEEecCcccc
Q 024303 218 ATWKLNAGSELHPPLSLRLTSQYSGQTLVANN--VIPQGWMPGATYRSLVNYN 268 (269)
Q Consensus 218 ~~W~~~~~~~~~gp~~~RiTs~~~G~~v~~~n--vip~~~~~G~~y~t~~qF~ 268 (269)
+-|+++. -.|+++|+|+|-+.+++|.+.+ ++-++|++=.+|++. +|+
T Consensus 80 AAf~lPa---n~G~l~i~LsS~v~~~~VfaPnVlvLD~~~~~~~~y~s~-~F~ 128 (303)
T PRK10564 80 AAYSLPA---NIGELTLTLSSLVNDKSVFAPNVLVLDQNMRPAAFYPSS-YFT 128 (303)
T ss_pred EEEEccc---ccccEEEEEEEEecCCcEEeceEEEEcCCCCEEEEeccc-ceE
Confidence 3455543 3568899999955556777776 456777777777766 553
No 22
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=38.96 E-value=92 Score=29.21 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=29.8
Q ss_pred CceeEEEEEcCCC-ceEEcccccC-------ceeeeCCCCCCCC--CeEEEEEEeeCCeE
Q 024303 195 GDLAGVDVKEGSG-EWRAMQQSWG-------ATWKLNAGSELHP--PLSLRLTSQYSGQT 244 (269)
Q Consensus 195 g~I~sVei~~~~~-~W~~m~r~~g-------~~W~~~~~~~~~g--p~~~RiTs~~~G~~ 244 (269)
.+|++|||..+++ +|++..-... ..|+++-. +..+ -+.+|.++ .+|.+
T Consensus 236 ~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~-~~~G~~~l~vRA~D-~~g~~ 293 (317)
T cd02110 236 RGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWD-LPPGEYELVARATD-STGNV 293 (317)
T ss_pred CCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEE-cCCCcEEEEEEEEC-CCCCc
Confidence 4799999999844 8986543211 15655522 2344 56677777 66653
No 23
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=36.03 E-value=1.3e+02 Score=22.03 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=34.3
Q ss_pred ceeEEEEEcCCCceE---EcccccCceeeeCCCCCCCCCeEEEEEEeeCCeEEEEc
Q 024303 196 DLAGVDVKEGSGEWR---AMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVAN 248 (269)
Q Consensus 196 ~I~sVei~~~~~~W~---~m~r~~g~~W~~~~~~~~~gp~~~RiTs~~~G~~v~~~ 248 (269)
+-++|+|.++=.+|+ +|.|..+. |.+.-. .+.+.+.+|+.. +|+++...
T Consensus 11 ~a~~V~v~G~F~~W~~~~pm~~~~~~-~~~~~~-L~~g~y~YkF~V--dg~w~~d~ 62 (79)
T cd02859 11 GGKEVYVTGSFDNWKKKIPLEKSGKG-FSATLR-LPPGKYQYKFIV--DGEWRHSP 62 (79)
T ss_pred CCcEEEEEEEcCCCCccccceECCCC-cEEEEE-cCCCCEEEEEEE--CCEEEeCC
Confidence 458999998745676 58887654 776542 345788888877 78887654
No 24
>PLN00115 pollen allergen group 3; Provisional
Probab=34.76 E-value=27 Score=28.27 Aligned_cols=18 Identities=22% Similarity=0.133 Sum_probs=12.0
Q ss_pred CCccchhhHHHHHHHHHHH
Q 024303 1 MATRSSISLSLSFFLAFLC 19 (269)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (269)
|++|++ ++.+++|.+|+.
T Consensus 1 ~~~~~~-~~~~~~~a~l~~ 18 (118)
T PLN00115 1 MSSLSF-LLLAVALAALFA 18 (118)
T ss_pred CchhHH-HHHHHHHHHHhh
Confidence 778877 556666666655
No 25
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=31.79 E-value=74 Score=26.20 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=23.0
Q ss_pred ccCceeeeEEEEEecCC---CCceEEEEEcc
Q 024303 150 RDAGVLEVRYARVACDY---SGRNIAFHVDQ 177 (269)
Q Consensus 150 ~~~G~~~i~wr~V~C~~---~g~ni~~~v~~ 177 (269)
+..|.+-++||.|+-+. .| .+.|.|+.
T Consensus 97 L~aG~Y~v~WrvvS~DGH~v~G-~~sFsV~~ 126 (127)
T COG2372 97 LKAGVYTVDWRVVSSDGHVVKG-SISFSVGA 126 (127)
T ss_pred CCCCcEEEEEEEEecCCcEecc-EEEEEecC
Confidence 78999999999999994 45 88888873
No 26
>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.
Probab=29.84 E-value=17 Score=30.14 Aligned_cols=20 Identities=30% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCccchhhHHHHHHHHHHHH
Q 024303 1 MATRSSISLSLSFFLAFLCY 20 (269)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (269)
|+-|++.+|.|+.|++.||-
T Consensus 1 m~pr~l~~LavLL~~A~Lfa 20 (143)
T PF05887_consen 1 MTPRHLCLLAVLLFGAALFA 20 (143)
T ss_dssp --------------------
T ss_pred Cccccccccccccccccccc
Confidence 88899988888888887773
No 27
>PRK10301 hypothetical protein; Provisional
Probab=28.70 E-value=89 Score=25.24 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=21.0
Q ss_pred ccCceeeeEEEEEecCC---CCceEEEEEc
Q 024303 150 RDAGVLEVRYARVACDY---SGRNIAFHVD 176 (269)
Q Consensus 150 ~~~G~~~i~wr~V~C~~---~g~ni~~~v~ 176 (269)
+..|.+.|+||.|+=+. .| .+.|.|+
T Consensus 96 L~~G~YtV~Wrvvs~DGH~~~G-~~~F~V~ 124 (124)
T PRK10301 96 LKPGTYTVDWHVVSVDGHKTKG-HYTFSVK 124 (124)
T ss_pred CCCccEEEEEEEEecCCCccCC-eEEEEEC
Confidence 57899999999999874 45 6887765
No 28
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=26.36 E-value=38 Score=21.96 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=9.2
Q ss_pred ccccCCCCCCc
Q 024303 249 NVIPQGWMPGA 259 (269)
Q Consensus 249 nvip~~~~~G~ 259 (269)
-+.|+||++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 37899999986
No 29
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=22.06 E-value=1e+02 Score=23.39 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=18.1
Q ss_pred ccCceeeeEEEEEecCC---CCceEEEEEc
Q 024303 150 RDAGVLEVRYARVACDY---SGRNIAFHVD 176 (269)
Q Consensus 150 ~~~G~~~i~wr~V~C~~---~g~ni~~~v~ 176 (269)
+..|.+.|+||.|+=+- .| .+.|.||
T Consensus 69 l~~G~YtV~wrvvs~DGH~~~G-~~~F~V~ 97 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADGHPVSG-SFSFTVK 97 (97)
T ss_dssp --SEEEEEEEEEEETTSCEEEE-EEEEEE-
T ss_pred CCCceEEEEEEEEecCCCCcCC-EEEEEEC
Confidence 67899999999999663 34 5777664
No 30
>COG3895 Predicted periplasmic protein [General function prediction only]
Probab=21.30 E-value=1.2e+02 Score=24.47 Aligned_cols=29 Identities=38% Similarity=0.555 Sum_probs=20.9
Q ss_pred CeEEEEEEeeCCeEEEEcccccCCCCCCcEEecC
Q 024303 231 PLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSL 264 (269)
Q Consensus 231 p~~~RiTs~~~G~~v~~~nvip~~~~~G~~y~t~ 264 (269)
..++++.. +|+++++.|||.+ .|+-|...
T Consensus 53 d~sv~~v~--Dg~tlv~~nviSa---SGAkYa~G 81 (112)
T COG3895 53 DISVSFVL--DGKTLVLSNVISA---SGAKYADG 81 (112)
T ss_pred CceEEEEe--cCCEEEEeeeeec---cCccccCc
Confidence 33455555 9999999999986 56767654
No 31
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.26 E-value=1e+02 Score=26.16 Aligned_cols=30 Identities=7% Similarity=0.184 Sum_probs=21.8
Q ss_pred CeEEEEEEeeCCe-EEEEcccccCCCCCCcEE
Q 024303 231 PLSLRLTSQYSGQ-TLVANNVIPQGWMPGATY 261 (269)
Q Consensus 231 p~~~RiTs~~~G~-~v~~~nvip~~~~~G~~y 261 (269)
.++|+||+ ...+ .|....++|.-|+.|+-.
T Consensus 73 ~v~F~vtD-~~~~v~V~Y~GilPDlFrEGqgV 103 (155)
T PRK13159 73 KVSFTVID-KNAATQVEYTGILPDLFRDNQSV 103 (155)
T ss_pred EEEEEEEc-CCcEEEEEEccCCCccccCCCeE
Confidence 57888888 4443 455678999999888643
No 32
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=20.93 E-value=2.2e+02 Score=20.34 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=31.2
Q ss_pred eeEEEEEcCCCc-e----EEcc-cccCceeeeCCCCCCC--C-CeEEEEEEeeCCeEEEE
Q 024303 197 LAGVDVKEGSGE-W----RAMQ-QSWGATWKLNAGSELH--P-PLSLRLTSQYSGQTLVA 247 (269)
Q Consensus 197 I~sVei~~~~~~-W----~~m~-r~~g~~W~~~~~~~~~--g-p~~~RiTs~~~G~~v~~ 247 (269)
-++|+|...... | .+|. +..+.+|++.-...+. + -+.+||+. .+|++...
T Consensus 22 A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~-~~g~~~~~ 80 (85)
T PF02922_consen 22 AKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDG-DDGETPEV 80 (85)
T ss_dssp ESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEE-TTTEEEEE
T ss_pred CCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEe-CCCcEEEE
Confidence 567777665222 4 3788 4666799775321133 3 89999999 77655543
No 33
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=20.92 E-value=3.1e+02 Score=20.32 Aligned_cols=49 Identities=10% Similarity=0.115 Sum_probs=26.3
Q ss_pred EEccccc-CceeeeCCCCCCC-CCeEEEEEEeeCCeEEEEcccccCCCCCCcEEec
Q 024303 210 RAMQQSW-GATWKLNAGSELH-PPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRS 263 (269)
Q Consensus 210 ~~m~r~~-g~~W~~~~~~~~~-gp~~~RiTs~~~G~~v~~~nvip~~~~~G~~y~t 263 (269)
.+|.+.. ...|.+.-..... ..+.+|++. .+|++.... ..+..+.+.++
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~-~~g~~~~~~----DPYa~~~~~~~ 99 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILG-ADGHLPLKA----DPYAFYSELRP 99 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEEC-CCCCEEEee----CCCceeeEeCC
Confidence 3677654 5578753221122 368999987 555554332 23555555543
No 34
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=20.24 E-value=2.6e+02 Score=26.52 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEEe--cCCCceeEEEEEcC-CCceEEcc
Q 024303 186 VVVEFE--DGDGDLAGVDVKEG-SGEWRAMQ 213 (269)
Q Consensus 186 v~v~n~--~g~g~I~sVei~~~-~~~W~~m~ 213 (269)
+.|... .|.++|.+|||..+ +.+|+...
T Consensus 227 ~~i~G~A~sG~~~I~rVEVS~DgG~tW~~A~ 257 (326)
T cd02113 227 HEISGLAWSGRGRIRRVDVSFDGGRTWQDAR 257 (326)
T ss_pred EEEEEEEECCCCCEEEEEEEcCCCCCceECc
Confidence 445443 33457999999998 45898643
No 35
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=20.15 E-value=1.9e+02 Score=27.78 Aligned_cols=48 Identities=27% Similarity=0.464 Sum_probs=28.0
Q ss_pred CceeEEEEEcC-CCceEEc--ccccCc----eeeeCCCCCCCC--CeEEEEEEeeCCe
Q 024303 195 GDLAGVDVKEG-SGEWRAM--QQSWGA----TWKLNAGSELHP--PLSLRLTSQYSGQ 243 (269)
Q Consensus 195 g~I~sVei~~~-~~~W~~m--~r~~g~----~W~~~~~~~~~g--p~~~RiTs~~~G~ 243 (269)
+.|++|||... +.+|++- ....+. .|++.=.-+..+ -+..|-|+ ..|.
T Consensus 288 ~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D-~~G~ 344 (367)
T cd02114 288 SGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATN-NDGQ 344 (367)
T ss_pred CCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEc-CCCC
Confidence 57999999998 5589854 332222 355542101245 45556677 6664
Done!