Query 024304
Match_columns 269
No_of_seqs 174 out of 1211
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:35:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02921 naphthoate synthase 100.0 7.8E-58 1.7E-62 415.1 26.4 264 5-268 1-264 (327)
2 KOG1680 Enoyl-CoA hydratase [L 100.0 2.4E-50 5.3E-55 346.9 17.3 193 70-268 38-230 (290)
3 PRK07396 dihydroxynaphthoic ac 100.0 6.1E-48 1.3E-52 343.4 22.2 202 65-268 9-210 (273)
4 TIGR03210 badI 2-ketocyclohexa 100.0 8.3E-48 1.8E-52 339.6 21.5 197 68-268 1-197 (256)
5 PRK09120 p-hydroxycinnamoyl Co 100.0 1.3E-47 2.7E-52 341.7 21.9 201 65-268 4-207 (275)
6 COG0447 MenB Dihydroxynaphthoi 100.0 1.5E-48 3.3E-53 324.0 14.7 203 64-267 13-218 (282)
7 TIGR01929 menB naphthoate synt 100.0 1.1E-47 2.3E-52 339.5 21.0 199 69-268 2-200 (259)
8 PRK05980 enoyl-CoA hydratase; 100.0 2.9E-47 6.2E-52 336.9 21.1 197 70-268 4-203 (260)
9 PRK06144 enoyl-CoA hydratase; 100.0 3.9E-47 8.5E-52 336.4 21.4 199 68-268 7-206 (262)
10 PRK05809 3-hydroxybutyryl-CoA 100.0 6.2E-47 1.3E-51 334.8 22.0 199 67-268 2-200 (260)
11 PRK06143 enoyl-CoA hydratase; 100.0 5.2E-47 1.1E-51 334.5 21.3 197 69-268 6-202 (256)
12 PRK06190 enoyl-CoA hydratase; 100.0 7.5E-47 1.6E-51 333.7 21.7 195 68-268 3-197 (258)
13 PRK09076 enoyl-CoA hydratase; 100.0 9E-47 2E-51 333.4 22.2 196 69-268 3-198 (258)
14 PRK06142 enoyl-CoA hydratase; 100.0 7.4E-47 1.6E-51 336.4 21.3 200 66-268 3-213 (272)
15 PRK05862 enoyl-CoA hydratase; 100.0 1E-46 2.2E-51 332.8 21.9 195 68-268 3-197 (257)
16 PRK06563 enoyl-CoA hydratase; 100.0 5.7E-47 1.2E-51 334.1 20.2 195 71-268 1-195 (255)
17 PRK07799 enoyl-CoA hydratase; 100.0 1.3E-46 2.8E-51 333.2 22.0 199 66-268 2-203 (263)
18 PRK07327 enoyl-CoA hydratase; 100.0 1.3E-46 2.9E-51 334.0 22.0 202 65-268 7-209 (268)
19 PRK06127 enoyl-CoA hydratase; 100.0 1.1E-46 2.5E-51 334.6 21.4 198 69-268 11-209 (269)
20 COG1024 CaiD Enoyl-CoA hydrata 100.0 1.4E-46 3.1E-51 332.0 21.8 199 67-268 3-202 (257)
21 PRK08150 enoyl-CoA hydratase; 100.0 1.4E-46 3.1E-51 331.5 21.8 195 69-269 2-196 (255)
22 PRK07657 enoyl-CoA hydratase; 100.0 1.6E-46 3.4E-51 332.2 21.9 198 69-268 3-200 (260)
23 PRK06494 enoyl-CoA hydratase; 100.0 1.5E-46 3.3E-51 332.1 21.4 195 68-268 3-197 (259)
24 PRK09674 enoyl-CoA hydratase-i 100.0 1.9E-46 4.1E-51 330.8 21.5 194 69-268 2-195 (255)
25 PLN02600 enoyl-CoA hydratase 100.0 1.5E-46 3.2E-51 330.8 20.8 190 78-268 2-191 (251)
26 PRK05995 enoyl-CoA hydratase; 100.0 1.9E-46 4.1E-51 332.0 21.4 197 68-268 3-201 (262)
27 PRK08140 enoyl-CoA hydratase; 100.0 2.3E-46 4.9E-51 331.5 21.8 197 68-268 3-202 (262)
28 PRK05674 gamma-carboxygeranoyl 100.0 1.7E-46 3.8E-51 332.7 20.9 199 67-268 3-203 (265)
29 PRK08139 enoyl-CoA hydratase; 100.0 3.4E-46 7.5E-51 331.0 21.9 199 66-268 8-206 (266)
30 PRK06023 enoyl-CoA hydratase; 100.0 3E-46 6.4E-51 328.9 21.3 194 70-268 4-200 (251)
31 PRK07658 enoyl-CoA hydratase; 100.0 3.1E-46 6.7E-51 329.8 21.4 195 70-268 3-197 (257)
32 PRK07260 enoyl-CoA hydratase; 100.0 2.5E-46 5.4E-51 330.1 20.3 198 68-268 1-201 (255)
33 PRK08260 enoyl-CoA hydratase; 100.0 3.3E-46 7.2E-51 335.9 21.3 198 68-268 3-216 (296)
34 TIGR02280 PaaB1 phenylacetate 100.0 3.2E-46 7E-51 329.5 20.8 194 71-268 1-196 (256)
35 PRK05869 enoyl-CoA hydratase; 100.0 3.1E-46 6.7E-51 323.0 20.1 188 78-268 15-202 (222)
36 PRK09245 enoyl-CoA hydratase; 100.0 3.5E-46 7.6E-51 331.0 20.5 196 70-268 4-206 (266)
37 PRK08138 enoyl-CoA hydratase; 100.0 7.7E-46 1.7E-50 328.0 22.4 195 69-268 7-201 (261)
38 PRK11423 methylmalonyl-CoA dec 100.0 4.7E-46 1E-50 329.3 20.8 197 67-268 2-199 (261)
39 PLN02664 enoyl-CoA hydratase/d 100.0 5.6E-46 1.2E-50 331.2 21.1 197 69-268 8-215 (275)
40 PRK08252 enoyl-CoA hydratase; 100.0 6.7E-46 1.5E-50 327.1 21.4 192 69-268 3-194 (254)
41 PRK07511 enoyl-CoA hydratase; 100.0 7.8E-46 1.7E-50 327.8 21.7 196 70-268 4-201 (260)
42 PRK05864 enoyl-CoA hydratase; 100.0 6.2E-46 1.4E-50 331.0 21.1 201 66-268 6-213 (276)
43 PRK05981 enoyl-CoA hydratase; 100.0 7.6E-46 1.6E-50 328.8 21.2 199 67-268 2-206 (266)
44 PRK06210 enoyl-CoA hydratase; 100.0 7.8E-46 1.7E-50 329.8 20.6 199 67-268 3-211 (272)
45 PRK03580 carnitinyl-CoA dehydr 100.0 1.2E-45 2.5E-50 326.8 21.5 194 70-268 4-197 (261)
46 PRK06688 enoyl-CoA hydratase; 100.0 1.1E-45 2.3E-50 326.7 20.9 195 69-268 5-199 (259)
47 PRK08259 enoyl-CoA hydratase; 100.0 1E-45 2.2E-50 325.9 20.5 194 69-268 3-196 (254)
48 PRK08258 enoyl-CoA hydratase; 100.0 2.2E-45 4.7E-50 327.7 22.3 197 69-268 17-217 (277)
49 PRK05870 enoyl-CoA hydratase; 100.0 7.2E-46 1.6E-50 326.0 18.9 193 70-268 4-196 (249)
50 PRK07468 enoyl-CoA hydratase; 100.0 1.6E-45 3.4E-50 326.2 20.9 197 68-268 3-202 (262)
51 PLN02888 enoyl-CoA hydratase 100.0 2.3E-45 4.9E-50 325.5 21.8 194 69-268 9-202 (265)
52 PRK07110 polyketide biosynthes 100.0 2.9E-45 6.3E-50 322.2 21.6 194 68-268 4-197 (249)
53 PRK07659 enoyl-CoA hydratase; 100.0 1.7E-45 3.7E-50 325.6 20.0 197 67-268 4-200 (260)
54 PRK08321 naphthoate synthase; 100.0 4.8E-45 1E-49 329.0 23.1 202 67-268 21-239 (302)
55 PRK07509 enoyl-CoA hydratase; 100.0 1E-44 2.2E-49 321.0 20.8 196 68-268 2-203 (262)
56 PF00378 ECH: Enoyl-CoA hydrat 100.0 3.3E-45 7.1E-50 321.0 16.9 192 73-268 2-193 (245)
57 PRK06495 enoyl-CoA hydratase; 100.0 1.2E-44 2.7E-49 319.6 20.5 194 68-268 3-197 (257)
58 PLN02157 3-hydroxyisobutyryl-C 100.0 1.4E-44 3E-49 335.1 21.1 197 67-268 35-234 (401)
59 PRK07938 enoyl-CoA hydratase; 100.0 1.7E-44 3.6E-49 317.4 20.0 186 78-268 9-194 (249)
60 PRK08290 enoyl-CoA hydratase; 100.0 2.4E-44 5.2E-49 322.4 21.2 197 67-268 2-219 (288)
61 PRK08788 enoyl-CoA hydratase; 100.0 3.7E-44 8.1E-49 320.1 22.2 197 69-268 17-224 (287)
62 PRK08272 enoyl-CoA hydratase; 100.0 2E-44 4.3E-49 325.2 20.7 198 65-268 6-227 (302)
63 PLN03214 probable enoyl-CoA hy 100.0 3.6E-44 7.8E-49 319.8 21.6 200 66-268 8-211 (278)
64 PRK12478 enoyl-CoA hydratase; 100.0 6.1E-44 1.3E-48 321.1 20.8 194 68-268 4-212 (298)
65 PRK07854 enoyl-CoA hydratase; 100.0 8.2E-44 1.8E-48 311.9 20.5 184 71-268 2-185 (243)
66 PRK05617 3-hydroxyisobutyryl-C 100.0 4.6E-44 1E-48 327.4 18.5 188 69-259 3-193 (342)
67 PRK06072 enoyl-CoA hydratase; 100.0 1.6E-43 3.4E-48 311.0 20.5 187 71-268 2-188 (248)
68 PRK07827 enoyl-CoA hydratase; 100.0 1.6E-43 3.4E-48 313.0 19.8 195 68-268 5-201 (260)
69 PLN02988 3-hydroxyisobutyryl-C 100.0 1.7E-43 3.6E-48 326.7 20.6 195 66-264 6-203 (381)
70 TIGR03189 dienoyl_CoA_hyt cycl 100.0 3.6E-43 7.7E-48 309.2 21.4 187 71-268 3-190 (251)
71 PLN02851 3-hydroxyisobutyryl-C 100.0 5.7E-43 1.2E-47 324.3 22.2 188 68-259 41-231 (407)
72 TIGR03200 dearomat_oah 6-oxocy 100.0 4.1E-43 9E-48 317.5 20.1 188 81-268 38-239 (360)
73 PRK07112 polyketide biosynthes 100.0 6.3E-43 1.4E-47 308.4 20.7 193 67-267 2-195 (255)
74 PLN02874 3-hydroxyisobutyryl-C 100.0 5.7E-43 1.2E-47 323.9 20.6 193 66-262 8-201 (379)
75 PRK06213 enoyl-CoA hydratase; 100.0 8.9E-43 1.9E-47 302.8 20.6 191 70-268 4-195 (229)
76 PLN02267 enoyl-CoA hydratase/i 100.0 2.4E-42 5.1E-47 301.8 20.4 194 71-268 2-200 (239)
77 PRK11730 fadB multifunctional 100.0 1E-41 2.2E-46 338.0 21.1 197 70-268 7-205 (715)
78 cd06558 crotonase-like Crotona 100.0 3.9E-41 8.4E-46 284.7 20.7 193 72-267 2-195 (195)
79 TIGR03222 benzo_boxC benzoyl-C 100.0 1.3E-40 2.7E-45 318.7 23.6 200 65-268 252-480 (546)
80 TIGR03222 benzo_boxC benzoyl-C 100.0 1.3E-40 2.8E-45 318.6 21.3 202 65-268 7-227 (546)
81 TIGR02437 FadB fatty oxidation 100.0 1.9E-40 4.1E-45 328.5 21.7 196 70-267 7-204 (714)
82 PRK11154 fadJ multifunctional 100.0 2.6E-40 5.6E-45 327.9 22.5 196 70-266 6-204 (708)
83 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.8E-40 4E-45 318.4 20.0 203 65-268 256-484 (550)
84 TIGR02441 fa_ox_alpha_mit fatt 100.0 6.8E-40 1.5E-44 325.3 22.2 201 65-268 9-226 (737)
85 KOG1681 Enoyl-CoA isomerase [L 100.0 4.6E-41 1E-45 281.3 11.7 191 78-269 29-232 (292)
86 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.2E-39 2.5E-44 312.9 21.7 201 66-268 12-231 (550)
87 TIGR02440 FadJ fatty oxidation 100.0 1.5E-39 3.2E-44 321.9 21.8 187 78-265 8-198 (699)
88 KOG1679 Enoyl-CoA hydratase [L 100.0 1.1E-40 2.5E-45 276.8 11.3 198 69-267 27-230 (291)
89 KOG0016 Enoyl-CoA hydratase/is 100.0 2E-37 4.3E-42 264.6 17.2 201 65-268 3-210 (266)
90 KOG1684 Enoyl-CoA hydratase [L 100.0 9.9E-37 2.1E-41 270.3 14.0 194 69-265 38-234 (401)
91 KOG1682 Enoyl-CoA isomerase [L 100.0 1.7E-33 3.7E-38 232.4 14.8 195 70-268 33-227 (287)
92 cd07014 S49_SppA Signal peptid 99.8 4.6E-21 9.9E-26 160.3 10.7 144 98-259 22-175 (177)
93 cd07020 Clp_protease_NfeD_1 No 99.8 2.5E-20 5.3E-25 157.2 13.4 152 82-260 2-173 (187)
94 cd07019 S49_SppA_1 Signal pept 99.7 1.7E-16 3.8E-21 136.2 11.2 161 80-259 1-209 (211)
95 cd07022 S49_Sppa_36K_type Sign 99.6 4.3E-15 9.4E-20 127.8 12.8 152 87-259 13-212 (214)
96 cd00394 Clp_protease_like Case 99.6 6.5E-15 1.4E-19 121.0 11.2 135 95-250 8-161 (161)
97 TIGR00705 SppA_67K signal pept 99.6 3E-15 6.5E-20 145.9 10.7 169 78-264 307-522 (584)
98 cd07023 S49_Sppa_N_C Signal pe 99.6 3.4E-14 7.4E-19 121.7 11.2 158 81-259 2-206 (208)
99 cd07016 S14_ClpP_1 Caseinolyti 99.5 7.2E-14 1.6E-18 114.8 11.8 129 98-250 15-160 (160)
100 TIGR00706 SppA_dom signal pept 99.5 1E-13 2.2E-18 118.7 13.2 155 81-263 2-205 (207)
101 cd07018 S49_SppA_67K_type Sign 99.4 1.5E-12 3.2E-17 112.7 11.3 146 95-260 26-220 (222)
102 cd07021 Clp_protease_NfeD_like 99.4 9.8E-12 2.1E-16 103.9 13.3 145 82-257 2-176 (178)
103 cd07015 Clp_protease_NfeD Nodu 99.1 5E-09 1.1E-13 87.0 14.4 138 94-253 9-165 (172)
104 PRK10949 protease 4; Provision 99.0 2E-08 4.3E-13 98.6 15.8 165 78-264 325-540 (618)
105 cd07013 S14_ClpP Caseinolytic 98.9 1.4E-08 3E-13 83.7 12.1 135 95-250 9-162 (162)
106 cd07017 S14_ClpP_2 Caseinolyti 98.7 1.5E-07 3.2E-12 78.2 11.3 135 95-250 18-171 (171)
107 PRK12553 ATP-dependent Clp pro 98.7 3.6E-07 7.7E-12 78.3 12.6 139 94-253 43-202 (207)
108 PRK00277 clpP ATP-dependent Cl 98.7 7.6E-07 1.7E-11 75.8 13.6 140 93-253 38-196 (200)
109 PRK11778 putative inner membra 98.6 6.7E-07 1.5E-11 81.3 12.6 162 78-262 89-295 (330)
110 PRK14512 ATP-dependent Clp pro 98.6 1.2E-06 2.5E-11 74.5 13.0 143 95-258 32-194 (197)
111 PF00574 CLP_protease: Clp pro 98.6 2.4E-07 5.2E-12 77.6 8.4 136 95-253 25-181 (182)
112 KOG1683 Hydroxyacyl-CoA dehydr 98.6 4.1E-08 9E-13 89.0 3.6 171 79-253 65-240 (380)
113 COG0616 SppA Periplasmic serin 98.5 8.1E-07 1.8E-11 80.9 11.5 144 100-263 82-272 (317)
114 PF01972 SDH_sah: Serine dehyd 98.5 5.4E-06 1.2E-10 72.8 14.8 95 93-211 70-164 (285)
115 TIGR00493 clpP ATP-dependent C 98.5 4.4E-06 9.5E-11 70.7 13.0 138 94-252 34-190 (191)
116 CHL00028 clpP ATP-dependent Cl 98.4 5E-06 1.1E-10 70.8 13.2 139 94-254 38-197 (200)
117 PRK12319 acetyl-CoA carboxylas 98.4 1.8E-05 3.8E-10 69.8 16.4 138 92-253 76-214 (256)
118 CHL00198 accA acetyl-CoA carbo 98.3 3.7E-05 8E-10 69.6 16.3 139 92-253 132-270 (322)
119 PRK12551 ATP-dependent Clp pro 98.3 1.8E-05 3.8E-10 67.2 13.3 140 94-254 33-191 (196)
120 PRK14514 ATP-dependent Clp pro 98.3 2.8E-05 6E-10 67.1 13.4 136 94-253 62-219 (221)
121 PRK14513 ATP-dependent Clp pro 98.3 3E-05 6.5E-10 66.0 13.4 137 93-255 34-194 (201)
122 PLN03230 acetyl-coenzyme A car 98.2 6.1E-05 1.3E-09 70.0 16.2 136 93-253 200-337 (431)
123 PRK05724 acetyl-CoA carboxylas 98.2 8.9E-05 1.9E-09 67.2 16.5 139 92-253 129-267 (319)
124 PLN03229 acetyl-coenzyme A car 98.2 7.8E-05 1.7E-09 73.4 16.7 139 92-253 220-358 (762)
125 TIGR00513 accA acetyl-CoA carb 98.2 0.00014 3.1E-09 65.7 16.2 138 92-253 129-267 (316)
126 TIGR00705 SppA_67K signal pept 98.1 3.5E-05 7.5E-10 75.8 12.9 86 98-201 76-161 (584)
127 PF01343 Peptidase_S49: Peptid 98.1 2.9E-06 6.3E-11 69.3 4.1 103 162-264 3-151 (154)
128 TIGR03133 malonate_beta malona 98.1 0.00017 3.6E-09 64.2 14.6 161 80-264 60-230 (274)
129 PRK10949 protease 4; Provision 98.0 0.00011 2.3E-09 72.6 12.6 87 98-202 95-181 (618)
130 TIGR00515 accD acetyl-CoA carb 97.9 0.00058 1.3E-08 61.2 15.1 160 78-267 118-279 (285)
131 TIGR03134 malonate_gamma malon 97.9 0.00054 1.2E-08 59.8 14.2 155 78-255 30-191 (238)
132 COG0740 ClpP Protease subunit 97.9 0.00033 7.1E-09 59.2 12.2 99 156-256 76-195 (200)
133 PRK05654 acetyl-CoA carboxylas 97.8 0.00084 1.8E-08 60.4 15.3 160 78-267 119-280 (292)
134 PRK07189 malonate decarboxylas 97.8 0.00049 1.1E-08 62.0 13.1 159 80-262 69-237 (301)
135 CHL00174 accD acetyl-CoA carbo 97.8 0.002 4.2E-08 57.9 16.5 158 80-266 134-292 (296)
136 COG1030 NfeD Membrane-bound se 97.6 0.0016 3.5E-08 61.0 14.0 154 78-258 25-194 (436)
137 PRK12552 ATP-dependent Clp pro 97.5 0.0024 5.3E-08 55.1 12.9 96 156-253 98-214 (222)
138 PF01039 Carboxyl_trans: Carbo 97.4 0.0019 4.1E-08 62.4 11.2 149 81-265 59-218 (493)
139 COG0777 AccD Acetyl-CoA carbox 97.3 0.0081 1.8E-07 52.9 13.0 158 80-267 123-281 (294)
140 TIGR01117 mmdA methylmalonyl-C 97.3 0.011 2.4E-07 57.3 15.3 167 78-265 313-493 (512)
141 TIGR01117 mmdA methylmalonyl-C 96.6 0.077 1.7E-06 51.6 14.6 154 81-265 84-241 (512)
142 COG0825 AccA Acetyl-CoA carbox 96.4 0.0057 1.2E-07 54.3 5.4 86 158-253 181-266 (317)
143 PLN02820 3-methylcrotonyl-CoA 96.4 0.19 4E-06 49.5 16.3 113 78-200 127-241 (569)
144 PF01039 Carboxyl_trans: Carbo 94.6 0.38 8.2E-06 46.6 10.9 166 78-263 292-474 (493)
145 COG4799 Acetyl-CoA carboxylase 94.1 0.24 5.3E-06 47.9 8.4 109 78-200 89-199 (526)
146 KOG0840 ATP-dependent Clp prot 93.9 0.49 1.1E-05 41.5 9.0 136 94-252 100-256 (275)
147 PLN02820 3-methylcrotonyl-CoA 93.7 3 6.4E-05 41.2 15.1 148 93-260 380-547 (569)
148 PF02601 Exonuc_VII_L: Exonucl 91.4 0.46 1E-05 43.1 6.0 74 98-197 55-137 (319)
149 TIGR00237 xseA exodeoxyribonuc 90.5 0.61 1.3E-05 44.4 6.0 73 98-196 170-248 (432)
150 COG0074 SucD Succinyl-CoA synt 89.0 1.2 2.7E-05 39.7 6.3 53 103-177 188-240 (293)
151 COG4799 Acetyl-CoA carboxylase 88.5 11 0.00025 36.6 12.9 163 78-260 322-501 (526)
152 PRK00286 xseA exodeoxyribonucl 87.7 1.2 2.5E-05 42.5 5.8 73 98-197 176-254 (438)
153 COG1570 XseA Exonuclease VII, 86.3 1.6 3.4E-05 41.5 5.6 72 99-196 177-254 (440)
154 PLN02522 ATP citrate (pro-S)-l 78.5 5.4 0.00012 39.6 6.3 53 102-177 209-262 (608)
155 PF13607 Succ_CoA_lig: Succiny 78.2 6.3 0.00014 31.4 5.6 52 102-176 41-92 (138)
156 PTZ00187 succinyl-CoA syntheta 77.7 6 0.00013 36.1 5.9 54 102-177 211-264 (317)
157 COG0793 Prc Periplasmic protea 68.0 7.3 0.00016 36.9 4.2 98 81-185 205-307 (406)
158 PLN00125 Succinyl-CoA ligase [ 66.4 13 0.00029 33.7 5.4 54 102-177 192-245 (300)
159 KOG0540 3-Methylcrotonyl-CoA c 64.8 1.3E+02 0.0029 28.9 11.7 150 82-257 351-511 (536)
160 KOG1255 Succinyl-CoA synthetas 61.6 20 0.00044 31.5 5.3 54 102-176 218-273 (329)
161 smart00250 PLEC Plectin repeat 60.8 7.2 0.00016 23.6 1.9 18 232-249 18-35 (38)
162 PF00549 Ligase_CoA: CoA-ligas 58.0 27 0.00059 28.4 5.3 57 102-178 60-121 (153)
163 PF06833 MdcE: Malonate decarb 56.0 1.4E+02 0.003 26.1 11.5 138 92-253 40-187 (234)
164 smart00870 Asparaginase Aspara 53.3 48 0.0011 30.2 6.8 33 93-125 55-88 (323)
165 PRK06091 membrane protein FdrA 52.8 37 0.00081 33.4 6.2 53 102-177 239-291 (555)
166 TIGR01019 sucCoAalpha succinyl 51.8 42 0.00091 30.2 6.0 24 102-125 185-208 (286)
167 PLN00049 carboxyl-terminal pro 51.1 11 0.00025 35.2 2.4 100 79-185 194-299 (389)
168 PRK05678 succinyl-CoA syntheta 50.7 45 0.00098 30.0 6.1 24 102-125 187-210 (291)
169 TIGR02717 AcCoA-syn-alpha acet 49.8 19 0.00041 34.4 3.7 53 102-177 190-242 (447)
170 PF06258 Mito_fiss_Elm1: Mitoc 48.3 2.1E+02 0.0046 25.9 12.2 194 66-268 96-310 (311)
171 COG3660 Predicted nucleoside-d 44.2 1.4E+02 0.0031 26.8 7.9 121 81-203 129-261 (329)
172 PF00681 Plectin: Plectin repe 43.9 8.3 0.00018 24.3 0.2 19 231-249 17-35 (45)
173 cd06567 Peptidase_S41 C-termin 40.3 19 0.00042 30.5 1.9 97 81-185 61-164 (224)
174 COG0252 AnsB L-asparaginase/ar 39.5 1.5E+02 0.0033 27.5 7.8 31 93-123 78-108 (351)
175 TIGR02153 gatD_arch glutamyl-t 39.5 86 0.0019 29.7 6.3 33 93-125 118-150 (404)
176 PF03464 eRF1_2: eRF1 domain 2 38.7 57 0.0012 25.4 4.3 46 81-126 25-84 (133)
177 PF03572 Peptidase_S41: Peptid 36.1 47 0.001 26.4 3.5 101 81-186 2-111 (169)
178 TIGR00520 asnASE_II L-asparagi 34.7 1.4E+02 0.0029 27.7 6.7 31 93-123 83-113 (349)
179 cd07560 Peptidase_S41_CPP C-te 34.3 2.7E+02 0.0058 23.6 8.1 97 81-185 50-151 (211)
180 PRK04183 glutamyl-tRNA(Gln) am 34.2 1.2E+02 0.0026 28.9 6.4 33 93-125 131-163 (419)
181 TIGR02886 spore_II_AA anti-sig 34.2 1.4E+02 0.003 21.7 5.7 47 72-125 2-48 (106)
182 PRK11186 carboxy-terminal prot 32.4 46 0.001 33.6 3.4 101 78-185 352-457 (667)
183 COG1618 Predicted nucleotide k 30.6 2.5E+02 0.0055 23.3 6.8 61 93-175 79-140 (179)
184 PF01740 STAS: STAS domain; I 30.3 1.6E+02 0.0035 21.7 5.5 47 72-125 3-57 (117)
185 PRK09461 ansA cytoplasmic aspa 29.9 3.5E+02 0.0075 24.8 8.5 31 93-125 61-92 (335)
186 cd04241 AAK_FomA-like AAK_FomA 28.5 1.2E+02 0.0026 26.2 5.1 36 88-126 13-48 (252)
187 PF00710 Asparaginase: Asparag 27.7 1.9E+02 0.0042 26.1 6.4 32 93-125 52-83 (313)
188 TIGR00377 ant_ant_sig anti-ant 27.1 2.4E+02 0.0053 20.3 6.2 49 70-125 4-52 (108)
189 TIGR00225 prc C-terminal pepti 26.8 3.3E+02 0.0072 24.6 7.9 100 80-187 152-256 (334)
190 PF12268 DUF3612: Protein of u 26.7 36 0.00079 27.5 1.3 25 114-139 78-102 (178)
191 TIGR00519 asnASE_I L-asparagin 26.1 2E+02 0.0042 26.5 6.2 32 93-125 57-88 (336)
192 KOG4230 C1-tetrahydrofolate sy 23.6 1.8E+02 0.004 29.1 5.6 51 106-173 355-405 (935)
193 PF00195 Chal_sti_synt_N: Chal 22.7 65 0.0014 28.0 2.2 77 102-199 107-185 (226)
194 PLN02312 acyl-CoA oxidase 22.6 73 0.0016 32.3 2.9 22 1-22 1-24 (680)
195 smart00463 SMR Small MutS-rela 22.4 1.7E+02 0.0036 20.3 4.0 30 97-126 12-42 (80)
196 PLN02287 3-ketoacyl-CoA thiola 21.8 85 0.0018 30.1 3.0 41 5-46 1-41 (452)
197 PF06935 DUF1284: Protein of u 21.7 1.4E+02 0.0029 22.4 3.6 36 95-132 2-37 (103)
198 PF01713 Smr: Smr domain; Int 21.6 1.3E+02 0.0028 21.1 3.4 29 97-125 9-37 (83)
199 PRK11096 ansB L-asparaginase I 20.8 3E+02 0.0065 25.5 6.3 29 93-123 80-108 (347)
200 COG3892 Uncharacterized protei 20.5 1.6E+02 0.0035 26.2 4.2 36 88-125 200-238 (310)
201 cd00411 Asparaginase Asparagin 20.4 5.9E+02 0.013 23.1 8.1 32 93-125 58-89 (323)
No 1
>PLN02921 naphthoate synthase
Probab=100.00 E-value=7.8e-58 Score=415.06 Aligned_cols=264 Identities=73% Similarity=1.117 Sum_probs=236.0
Q ss_pred hhHHHHHHHHhhccccccccCCCCCCccccccCCCCCcccccCCCCCCCcchhhhhccCCCCCcceEEEEEEecCCEEEE
Q 024304 5 IDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKI 84 (269)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~gv~~I 84 (269)
|++++||++++++||.|.++.++..++...+...+.++|+++||.+|.++..|+.++.++..+|++|.+++..+++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Va~I 80 (327)
T PLN02921 1 MDAARRRLARVANHLVPSANPASMAAARSSSATAPPDSYRRVHGDVSSEPVVWRKVPDGSGKEFTDIIYEKAVGEGIAKI 80 (327)
T ss_pred CchhhhHHHHHhcccCcccccccccccccccccCCCCchhhhccccCCCCccccccccCCccCCceEEEEEecCCCEEEE
Confidence 68999999999999999888777777655566689999999999999999999988888888999999987223899999
Q ss_pred EEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcC
Q 024304 85 TINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRL 164 (269)
Q Consensus 85 ~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 164 (269)
+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++.................+++..+.++
T Consensus 81 tLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 160 (327)
T PLN02921 81 TINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRL 160 (327)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999998679999999987643221111112222234567788999
Q ss_pred CCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHc
Q 024304 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKM 244 (269)
Q Consensus 165 ~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~ 244 (269)
|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..++++|+++|+.++|+||+++
T Consensus 161 ~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~ 240 (327)
T PLN02921 161 PKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKM 240 (327)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceecCCCcHHHHHHHHHHhhc
Q 024304 245 GLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 245 GLv~~vv~~e~l~~~a~~la~~la 268 (269)
||||+|+|.+++++++.+++++|+
T Consensus 241 GLV~~vv~~~~l~~~a~~~a~~la 264 (327)
T PLN02921 241 GLVNTVVPLDELEGETVKWCREIL 264 (327)
T ss_pred CCceEEeCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886
No 2
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.4e-50 Score=346.90 Aligned_cols=193 Identities=39% Similarity=0.575 Sum_probs=175.0
Q ss_pred eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhh
Q 024304 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (269)
Q Consensus 70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~ 149 (269)
.....+ +++|+.|+||||+++|+|+..|+.+|.++|..+++|++++++||||.| ++||+|+|++++....+.+....
T Consensus 38 ~~~~~~--d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~g-ksFcsG~Dl~e~~~~~~~~~~~~ 114 (290)
T KOG1680|consen 38 IELVGE--DNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSG-KSFCSGADLKEMKKDEFQDVSDG 114 (290)
T ss_pred eEEeec--CCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCC-CccccccCHHHHhhccccccccc
Confidence 344445 899999999999999999999999999999999999999999999999 79999999999876544432211
Q ss_pred hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHH
Q 024304 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREM 229 (269)
Q Consensus 150 ~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l 229 (269)
. +...+..+.+.+||+||+++|+|+|||++|+++||+|||+|+|+|++++.++|++|.+||+.+|+|.+|.++|+++
T Consensus 115 ~---~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~ 191 (290)
T KOG1680|consen 115 I---FLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEM 191 (290)
T ss_pred c---ccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHH
Confidence 1 2233445558999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 230 WFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 230 ~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++||++++++||+++||||+|+|.++++++|.++++++|
T Consensus 192 ~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia 230 (290)
T KOG1680|consen 192 ILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIA 230 (290)
T ss_pred HHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987
No 3
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=6.1e-48 Score=343.39 Aligned_cols=202 Identities=66% Similarity=1.066 Sum_probs=181.3
Q ss_pred CCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc
Q 024304 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (269)
Q Consensus 65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~ 144 (269)
..+++++.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++......
T Consensus 9 ~~~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~ 86 (273)
T PRK07396 9 CKEYEDILYKS--ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYV 86 (273)
T ss_pred CCCCcceEEEe--cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhccccc
Confidence 66788899998 9999999999999999999999999999999999999999999999986699999999986422111
Q ss_pred chhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (269)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~ 224 (269)
...........+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++.+|++++|..
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~ 166 (273)
T PRK07396 87 DDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQK 166 (273)
T ss_pred chhhhhhhHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHH
Confidence 11111112234566788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++++|+++|++++|+||+++||||+|+|++++++.+.++|++|+
T Consensus 167 ~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 210 (273)
T PRK07396 167 KAREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREML 210 (273)
T ss_pred HHHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999886
No 4
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=8.3e-48 Score=339.61 Aligned_cols=197 Identities=52% Similarity=0.854 Sum_probs=177.8
Q ss_pred cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (269)
Q Consensus 68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~ 147 (269)
|++|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++.... ....
T Consensus 1 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~-~~~~ 77 (256)
T TIGR03210 1 YEDILYEK--RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGY-DGRG 77 (256)
T ss_pred CCceEEEe--eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccc-cchh
Confidence 45688888 89999999999999999999999999999999999999999999999877999999999864211 1111
Q ss_pred hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (269)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~ 227 (269)
.. ...+..++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..+++
T Consensus 78 ~~-~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~ 156 (256)
T TIGR03210 78 TI-GLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR 156 (256)
T ss_pred HH-HHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence 11 12245677889999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+|+++|++++|+||+++||||+|+|.+++++.+.+++++|+
T Consensus 157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia 197 (256)
T TIGR03210 157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIV 197 (256)
T ss_pred HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886
No 5
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=1.3e-47 Score=341.69 Aligned_cols=201 Identities=33% Similarity=0.468 Sum_probs=180.2
Q ss_pred CCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc
Q 024304 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (269)
Q Consensus 65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~ 144 (269)
...|+.|.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++......
T Consensus 4 ~~~~~~i~~~~--~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~ 80 (275)
T PRK09120 4 ENRWDTVKVEV--EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLKEYFRETDA 80 (275)
T ss_pred ccccccEEEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CceecCcCHHHHhhcccc
Confidence 44578899998 899999999999999999999999999999999999999999999998 699999999886321111
Q ss_pred chh---hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhh
Q 024304 145 DYE---NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221 (269)
Q Consensus 145 ~~~---~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~ 221 (269)
... .........++..+..+||||||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~i 160 (275)
T PRK09120 81 QPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTV 160 (275)
T ss_pred chhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHc
Confidence 111 01111234567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 222 G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|..++++|+++|+.++|+||+++||||+|+|.+++++++.+++++|+
T Consensus 161 G~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 207 (275)
T PRK09120 161 GHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLL 207 (275)
T ss_pred CHHHHHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986
No 6
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-48 Score=324.05 Aligned_cols=203 Identities=67% Similarity=1.056 Sum_probs=192.0
Q ss_pred CCCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcC--CCCceecccccccccc-
Q 024304 64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK--GTEAFCSGGDQALRTR- 140 (269)
Q Consensus 64 ~~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~--g~~~Fc~G~Dl~~~~~- 140 (269)
...+|++|.|++. .++|++|+||||+++|+|.+.++.||.++|.+++.|+++.||||||. |+++||+|+|.+....
T Consensus 13 ~~~~y~dI~Y~~~-~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~ 91 (282)
T COG0447 13 GFEGYEDITYEKS-VDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDS 91 (282)
T ss_pred hcCCcceeEEeec-cCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccC
Confidence 3668999999994 48999999999999999999999999999999999999999999975 7899999999998876
Q ss_pred CCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhh
Q 024304 141 DGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL 220 (269)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~ 220 (269)
..+.+++...+.++.++++.|+.+||||||.|+|+++|||..|.+.||+.||+++|+|++..+++|.|.+++|+.+|.|.
T Consensus 92 ~gY~~d~~~~rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~ 171 (282)
T COG0447 92 GGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARI 171 (282)
T ss_pred CCccCCccCcccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHH
Confidence 56666777778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhh
Q 024304 221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQ 267 (269)
Q Consensus 221 ~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~l 267 (269)
+|+++|+|+++.++.++|+||+++||||.|||.++|+++..+.++++
T Consensus 172 VGqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~ 218 (282)
T COG0447 172 VGQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREM 218 (282)
T ss_pred hhhhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988765
No 7
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=1.1e-47 Score=339.50 Aligned_cols=199 Identities=66% Similarity=1.036 Sum_probs=176.2
Q ss_pred ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (269)
Q Consensus 69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~ 148 (269)
+++.+++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++..........
T Consensus 2 ~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 80 (259)
T TIGR01929 2 TDIRYEKS-TDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSG 80 (259)
T ss_pred ceEEEEEc-CCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhh
Confidence 45677652 58999999999999999999999999999999999999999999999867999999998764221111111
Q ss_pred hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (269)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~ 228 (269)
.....+..+...+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++.+|++++|..++++
T Consensus 81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~ 160 (259)
T TIGR01929 81 VHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE 160 (259)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence 11122345677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|+++|++++|+||+++||||+|+|++++.+.+.+++++|+
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 200 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREIL 200 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999886
No 8
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-47 Score=336.92 Aligned_cols=197 Identities=30% Similarity=0.433 Sum_probs=176.4
Q ss_pred eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc-chh-
Q 024304 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-DYE- 147 (269)
Q Consensus 70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~-~~~- 147 (269)
.|.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++...... ...
T Consensus 4 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK05980 4 TVLIEI--RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVA 81 (260)
T ss_pred eEEEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhh
Confidence 578888 8999999999999999999999999999999999999999999999986799999999986432110 111
Q ss_pred -hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304 148 -NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (269)
Q Consensus 148 -~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a 226 (269)
.........++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 161 (260)
T PRK05980 82 LRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRA 161 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHH
Confidence 1111123456778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++|+++|++++|+||+++||||+|+|++++++++.+++++++
T Consensus 162 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 203 (260)
T PRK05980 162 LELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRII 203 (260)
T ss_pred HHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998876
No 9
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-47 Score=336.38 Aligned_cols=199 Identities=31% Similarity=0.403 Sum_probs=178.6
Q ss_pred cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (269)
Q Consensus 68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~ 147 (269)
.+.+.++. +++|++|+||||+++|+||.+|+++|.+++++++.|+++++|||+|.|+++||+|+|++++.........
T Consensus 7 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 84 (262)
T PRK06144 7 TDELLLEV--RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDA 84 (262)
T ss_pred CCceEEEe--eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHH
Confidence 35688888 8999999999999999999999999999999999999999999999986799999999986432211111
Q ss_pred hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCC-cccCCCChHHHHHHhhhCHHHH
Q 024304 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK-VGSFDAGYGSSIMSRLVGPKKA 226 (269)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~-~Gl~p~~g~~~~l~r~~G~~~a 226 (269)
......+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.+ +|++|+++++++|++++|..++
T Consensus 85 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a 164 (262)
T PRK06144 85 VAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV 164 (262)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence 111223456777889999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++++++|+.++|+||+++||||+|+|.+++.+++.+++++++
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~ 206 (262)
T PRK06144 165 KDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLA 206 (262)
T ss_pred HHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999886
No 10
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=6.2e-47 Score=334.79 Aligned_cols=199 Identities=37% Similarity=0.535 Sum_probs=179.5
Q ss_pred CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (269)
Q Consensus 67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~ 146 (269)
+|+++.+++ +++|++|+||||+++|++|.+|+.+|.++++.+++|+++++|||+|.|+++||+|+|++++........
T Consensus 2 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~ 79 (260)
T PRK05809 2 ELKNVILEK--EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEG 79 (260)
T ss_pred CcceEEEEE--eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHH
Confidence 456788988 899999999999999999999999999999999999999999999998679999999998753221111
Q ss_pred hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (269)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a 226 (269)
..+ ......++..+.++|||+||+|+|+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..++
T Consensus 80 ~~~-~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 158 (260)
T PRK05809 80 RKF-GLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA 158 (260)
T ss_pred HHH-HHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 111 1123467778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++|+++|+.++|+||+++||||+|+|++++.+.+.+++++|+
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 200 (260)
T PRK05809 159 KELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIA 200 (260)
T ss_pred HHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876
No 11
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.2e-47 Score=334.49 Aligned_cols=197 Identities=30% Similarity=0.431 Sum_probs=175.3
Q ss_pred ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (269)
Q Consensus 69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~ 148 (269)
.++.++.. +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||||.|+++||+|+|++++..........
T Consensus 6 ~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 84 (256)
T PRK06143 6 AHAGVTRD-DRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEA 84 (256)
T ss_pred ccceeeec-CCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHH
Confidence 34667753 78999999999999999999999999999999999999999999999867999999999875322111111
Q ss_pred hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (269)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~ 228 (269)
+ ...+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|+ |++++++++++++|..++++
T Consensus 85 ~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~ 162 (256)
T PRK06143 85 F-ISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRW 162 (256)
T ss_pred H-HHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHH
Confidence 1 122456778899999999999999999999999999999999999999999999997 88888999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|+++|+.++|+||+++||||+|+|++++.+.+.+++++++
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 202 (256)
T PRK06143 163 LLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLA 202 (256)
T ss_pred HHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999886
No 12
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.5e-47 Score=333.66 Aligned_cols=195 Identities=31% Similarity=0.432 Sum_probs=178.2
Q ss_pred cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (269)
Q Consensus 68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~ 147 (269)
++.+.++. +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++....... .
T Consensus 3 ~~~v~~~~--~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~-~ 78 (258)
T PRK06190 3 EPILLVET--HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGAD-PAFCAGLDLKELGGDGSAY-G 78 (258)
T ss_pred CceEEEEe--eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhcccchh-h
Confidence 45788888 899999999999999999999999999999999999999999999998 6999999999875322111 1
Q ss_pred hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (269)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~ 227 (269)
. ...+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++++++++++++|..+++
T Consensus 79 ~--~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 156 (258)
T PRK06190 79 A--QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRAR 156 (258)
T ss_pred H--HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHH
Confidence 1 12245677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+|+++|++++|+||+++||||+++|.+++++++.+++++|+
T Consensus 157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 197 (258)
T PRK06190 157 RMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIA 197 (258)
T ss_pred HHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886
No 13
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9e-47 Score=333.38 Aligned_cols=196 Identities=24% Similarity=0.335 Sum_probs=176.2
Q ss_pred ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (269)
Q Consensus 69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~ 148 (269)
..|.+++ +++|++||||||++ |++|.+|+.+|.+++++++.|+++++|||+|.|+++||+|+|++++..........
T Consensus 3 ~~v~~~~--~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~ 79 (258)
T PRK09076 3 IELDLEI--DGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVARE 79 (258)
T ss_pred eEEEEEE--ECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHH
Confidence 3578888 89999999999986 99999999999999999999999999999999877999999999865322111111
Q ss_pred hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (269)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~ 228 (269)
. ...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++++
T Consensus 80 ~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 158 (258)
T PRK09076 80 M-ARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKR 158 (258)
T ss_pred H-HHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 1 112446677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|+++|+.++|+||+++||||+|+|++++.+++.+++++++
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~ 198 (258)
T PRK09076 159 MILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVA 198 (258)
T ss_pred HHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999886
No 14
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.4e-47 Score=336.35 Aligned_cols=200 Identities=28% Similarity=0.369 Sum_probs=178.4
Q ss_pred CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc--
Q 024304 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-- 143 (269)
Q Consensus 66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~-- 143 (269)
+.++.|.+++ +++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++.....
T Consensus 3 ~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~ 79 (272)
T PRK06142 3 TTYESFTVEL--ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSG-KHFSYGIDLPAMAGVFGQL 79 (272)
T ss_pred CCcceEEEEe--cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhhhcccc
Confidence 3567799998 999999999999999999999999999999999999999999999998 69999999998643110
Q ss_pred ------cchhhhh--hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHH
Q 024304 144 ------ADYENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS 215 (269)
Q Consensus 144 ------~~~~~~~--~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~ 215 (269)
....... ...+.+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 159 (272)
T PRK06142 80 GKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQ 159 (272)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHH
Confidence 0011111 11235667788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCC-CcHHHHHHHHHHhhc
Q 024304 216 IMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPV-SLFVAYLMSLTKCQA 268 (269)
Q Consensus 216 ~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~-e~l~~~a~~la~~la 268 (269)
+|++++|..++++|+++|++++|+||+++||||+|+|+ +++++.+.+++++++
T Consensus 160 ~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia 213 (272)
T PRK06142 160 RLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIA 213 (272)
T ss_pred HHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999996 899999999999886
No 15
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-46 Score=332.83 Aligned_cols=195 Identities=35% Similarity=0.539 Sum_probs=176.9
Q ss_pred cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (269)
Q Consensus 68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~ 147 (269)
++.+.+++ +++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++..... .+
T Consensus 3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~--~~ 77 (257)
T PRK05862 3 YETILVET--RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSE-KAFAAGADIKEMADLSF--MD 77 (257)
T ss_pred CceEEEEe--eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CceECCcChHhHhccch--hH
Confidence 45688888 899999999999999999999999999999999999999999999998 69999999998753221 11
Q ss_pred hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (269)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~ 227 (269)
.. ...+..++..|..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..+++
T Consensus 78 ~~-~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T PRK05862 78 VY-KGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAM 156 (257)
T ss_pred HH-HHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHH
Confidence 11 11233466788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+|+++|+.++|+||+++||||+|+|++++++++.+++++++
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~ 197 (257)
T PRK05862 157 DLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIA 197 (257)
T ss_pred HHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886
No 16
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-47 Score=334.14 Aligned_cols=195 Identities=27% Similarity=0.337 Sum_probs=171.9
Q ss_pred EEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhh
Q 024304 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (269)
Q Consensus 71 v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~ 150 (269)
|.+++ +++|++|+||||+++|+||.+|+.+|.++++++++|+++++|||+|.| ++||+|+|++++............
T Consensus 1 ~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~ 77 (255)
T PRK06563 1 VSRER--RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHG-EHFTAGLDLADVAPKLAAGGFPFP 77 (255)
T ss_pred CeEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCCcCCcCHHHHhhccccchhhhh
Confidence 35667 899999999999999999999999999999999999999999999998 699999999986432111111111
Q ss_pred hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHH
Q 024304 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (269)
Q Consensus 151 ~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ 230 (269)
......+...+.++||||||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..++++|+
T Consensus 78 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ 157 (255)
T PRK06563 78 EGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYL 157 (255)
T ss_pred hhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHH
Confidence 11122233357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 231 FLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 231 ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++|+.++++||+++||||+|+|.+++.+++.+++++|+
T Consensus 158 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 195 (255)
T PRK06563 158 LTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIA 195 (255)
T ss_pred HcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999886
No 17
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-46 Score=333.23 Aligned_cols=199 Identities=28% Similarity=0.416 Sum_probs=175.5
Q ss_pred CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (269)
Q Consensus 66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~ 145 (269)
+.++.+.+++ +++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++.......
T Consensus 2 ~~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~ 78 (263)
T PRK07799 2 EGGPHALVEQ--RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAG-GAFCAGMDLKAATKKPPGD 78 (263)
T ss_pred CCCceEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccccCHHHHhhccccc
Confidence 3456789998 899999999999999999999999999999999999999999999998 7999999999875322111
Q ss_pred h-h-h-hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhC
Q 024304 146 Y-E-N-FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG 222 (269)
Q Consensus 146 ~-~-~-~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G 222 (269)
. . . .....+.. +..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|
T Consensus 79 ~~~~~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 157 (263)
T PRK07799 79 SFKDGSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIP 157 (263)
T ss_pred hhhhhhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhC
Confidence 0 0 0 00111222 23567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 223 ~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
..++++|+++|++++|+||+++||||+|+|++++.+.+.+++++++
T Consensus 158 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~ 203 (263)
T PRK07799 158 YTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELIN 203 (263)
T ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876
No 18
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-46 Score=333.99 Aligned_cols=202 Identities=25% Similarity=0.369 Sum_probs=179.3
Q ss_pred CCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc
Q 024304 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (269)
Q Consensus 65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~ 144 (269)
...|++|.++.. +++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||||.| ++||+|.|++++......
T Consensus 7 ~~~~~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~ 84 (268)
T PRK07327 7 YADYPALRFDRP-PPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGGDLALVEEMADD 84 (268)
T ss_pred CCCCCeEEEEec-CCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCC-CCcccccCHHHHhhccCc
Confidence 445778888872 478999999999999999999999999999999999999999999999 699999999876432111
Q ss_pred chh-hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH
Q 024304 145 DYE-NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (269)
Q Consensus 145 ~~~-~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~ 223 (269)
... .........++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 164 (268)
T PRK07327 85 FEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGM 164 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCH
Confidence 110 1011123466778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
.++++|+++|++++|+||+++||||+|+|.+++.+++.++|++|+
T Consensus 165 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 209 (268)
T PRK07327 165 AKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLA 209 (268)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999886
No 19
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-46 Score=334.63 Aligned_cols=198 Identities=31% Similarity=0.482 Sum_probs=177.7
Q ss_pred ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh-
Q 024304 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE- 147 (269)
Q Consensus 69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~- 147 (269)
+.|.+++ +++|++|+||||+++|++|.+|+.+|.++++.+++|+++++|||+|.|+++||+|+|++.+.........
T Consensus 11 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 88 (269)
T PRK06127 11 GKLLAEK--TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV 88 (269)
T ss_pred CceEEEE--ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence 4578888 8999999999999999999999999999999999999999999999986799999999986432111111
Q ss_pred hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (269)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~ 227 (269)
.........++..+..+||||||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..+++
T Consensus 89 ~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 168 (269)
T PRK06127 89 AAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAK 168 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHH
Confidence 11111234567789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+|+++|++++|+||+++||||+|+|.+++++++.++|++++
T Consensus 169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~ 209 (269)
T PRK06127 169 DLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIA 209 (269)
T ss_pred HHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886
No 20
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=1.4e-46 Score=331.97 Aligned_cols=199 Identities=35% Similarity=0.551 Sum_probs=178.6
Q ss_pred CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (269)
Q Consensus 67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~ 146 (269)
.+..+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++.+........
T Consensus 3 ~~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g-~~FsaG~Dl~~~~~~~~~~~ 79 (257)
T COG1024 3 TYETILVER--EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG-KAFSAGADLKELLSPEDGNA 79 (257)
T ss_pred CCCeeEEEe--eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhcccchhH
Confidence 456788888 788999999999999999999999999999999999999999999999 89999999999864111111
Q ss_pred hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (269)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a 226 (269)
........+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||.++|++|++|++++++|++|..++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a 159 (257)
T COG1024 80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRA 159 (257)
T ss_pred HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHH
Confidence 11111223467889999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCC-CcHHHHHHHHHHhhc
Q 024304 227 REMWFLARFYTAEEAEKMGLVNTVVPV-SLFVAYLMSLTKCQA 268 (269)
Q Consensus 227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~-e~l~~~a~~la~~la 268 (269)
++|++||+.++++||+++||||++++. +++++.+.+++++++
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a 202 (257)
T COG1024 160 KELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLA 202 (257)
T ss_pred HHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999985 799999999999986
No 21
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-46 Score=331.49 Aligned_cols=195 Identities=29% Similarity=0.443 Sum_probs=174.8
Q ss_pred ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (269)
Q Consensus 69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~ 148 (269)
+.|.++. +++|++|+||||+++|+||.+|+.+|.++++.++ +++++|||||.| ++||+|+|++++..........
T Consensus 2 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 76 (255)
T PRK08150 2 SLVSYEL--DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEG-DHFCAGLDLSELRERDAGEGMH 76 (255)
T ss_pred ceEEEEe--eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCC-CceecCcCHHHHhhccchhHHH
Confidence 3577888 8999999999999999999999999999999997 789999999998 6999999999875322111111
Q ss_pred hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (269)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~ 228 (269)
. ...+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++|..++++
T Consensus 77 ~-~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 155 (255)
T PRK08150 77 H-SRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD 155 (255)
T ss_pred H-HHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 1 122456677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304 229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH 269 (269)
Q Consensus 229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~ 269 (269)
|+++|+.++|+||+++||||+|+|.+++.+++.+++++|+.
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~ 196 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQ 196 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999873
No 22
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-46 Score=332.17 Aligned_cols=198 Identities=31% Similarity=0.513 Sum_probs=177.4
Q ss_pred ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (269)
Q Consensus 69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~ 148 (269)
+.|.+++. +++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|.|+++||+|+|++++..........
T Consensus 3 ~~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~ 81 (260)
T PRK07657 3 QNISVDYV-TPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRH 81 (260)
T ss_pred ceEEEEEc-cCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHH
Confidence 36777742 68999999999999999999999999999999999999999999999966999999999875322111111
Q ss_pred hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (269)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~ 228 (269)
....+..++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..++++
T Consensus 82 -~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~ 160 (260)
T PRK07657 82 -AVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKE 160 (260)
T ss_pred -HHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence 1122456778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|+++|++++++||+++||||+|+|.+++++.+.+++++++
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~ 200 (260)
T PRK07657 161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIA 200 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999886
No 23
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-46 Score=332.10 Aligned_cols=195 Identities=32% Similarity=0.421 Sum_probs=174.5
Q ss_pred cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (269)
Q Consensus 68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~ 147 (269)
++.|.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++....... .
T Consensus 3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~-~ 79 (259)
T PRK06494 3 LPFSTVER--KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG-W 79 (259)
T ss_pred CceeEEEe--ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-h
Confidence 46788888 89999999999999999999999999999999999999999999999867999999999864322111 1
Q ss_pred hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (269)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~ 227 (269)
. ...+..+. .+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..+++
T Consensus 80 ~--~~~~~~~~-~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 156 (259)
T PRK06494 80 P--ESGFGGLT-SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAM 156 (259)
T ss_pred h--hHHHHHHH-HHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHH
Confidence 1 11122333 34589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+|+++|+.++|+||+++||||+|+|++++++.+.+++++++
T Consensus 157 ~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 197 (259)
T PRK06494 157 GMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDIL 197 (259)
T ss_pred HHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886
No 24
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=1.9e-46 Score=330.82 Aligned_cols=194 Identities=29% Similarity=0.471 Sum_probs=176.1
Q ss_pred ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (269)
Q Consensus 69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~ 148 (269)
..|.++. +++|++||||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++..... ...
T Consensus 2 ~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~ 76 (255)
T PRK09674 2 SELLVSR--QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNA-RFFAAGADLNEMAEKDL--AAT 76 (255)
T ss_pred ceEEEEe--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecccChHhHhccch--hhh
Confidence 3577787 899999999999999999999999999999999999999999999998 79999999998653211 111
Q ss_pred hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (269)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~ 228 (269)
.......++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++++
T Consensus 77 -~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~ 155 (255)
T PRK09674 77 -LNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQ 155 (255)
T ss_pred -HHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 1112345677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|+++|+.++++||+++||||+|+|++++.+.+.+++++|+
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~ 195 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIA 195 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999886
No 25
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=1.5e-46 Score=330.78 Aligned_cols=190 Identities=30% Similarity=0.497 Sum_probs=171.9
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHH
Q 024304 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (269)
Q Consensus 78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (269)
+++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||+|.++++||+|+|++++..........+ ...+..+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~-~~~~~~~ 80 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKF-VNSLRST 80 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHH-HHHHHHH
Confidence 689999999999999999999999999999999999999999999986579999999998753221111111 1224566
Q ss_pred HHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCC
Q 024304 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237 (269)
Q Consensus 158 ~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~ 237 (269)
+..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++++|+++|+.++
T Consensus 81 ~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~ 160 (251)
T PLN02600 81 FSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIG 160 (251)
T ss_pred HHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccC
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 238 AEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 238 a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++||+++||||+|+|.+++.+++.++|++|+
T Consensus 161 a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la 191 (251)
T PLN02600 161 AREAASMGLVNYCVPAGEAYEKALELAQEIN 191 (251)
T ss_pred HHHHHHcCCCcEeeChhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999886
No 26
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-46 Score=332.00 Aligned_cols=197 Identities=35% Similarity=0.532 Sum_probs=175.3
Q ss_pred cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc-cch
Q 024304 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-ADY 146 (269)
Q Consensus 68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~-~~~ 146 (269)
|+.+.++. +++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++..... ...
T Consensus 3 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (262)
T PRK05995 3 YETLEIEQ--RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAG-KAFCAGADLNWMKKMAGYSDD 79 (262)
T ss_pred CceEEEEe--eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CccccCcCHHHHhhhcccCch
Confidence 56788888 899999999999999999999999999999999999999999999999 69999999998643211 111
Q ss_pred hhhh-hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304 147 ENFG-RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (269)
Q Consensus 147 ~~~~-~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~ 225 (269)
.... ...+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++ ++++++|..+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~ 158 (262)
T PRK05995 80 ENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGERA 158 (262)
T ss_pred hhhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHHH
Confidence 1111 1224567788999999999999999999999999999999999999999999999999988654 5899999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+++|+++|++++|+||+++||||+|+|.+++.+++.+++++++
T Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 201 (262)
T PRK05995 159 ARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALV 201 (262)
T ss_pred HHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999886
No 27
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-46 Score=331.53 Aligned_cols=197 Identities=32% Similarity=0.459 Sum_probs=176.0
Q ss_pred cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (269)
Q Consensus 68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~ 147 (269)
|+.+.++. +++|++|+||||+++|++|.+|+.+|.+++++++ |+++++|||+|.| ++||+|.|++++.........
T Consensus 3 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 78 (262)
T PRK08140 3 YETILLAI--EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAG-RGFCAGQDLADRDVTPGGAMP 78 (262)
T ss_pred CceEEEEe--ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCC-CCcccCcChHHHhccccccch
Confidence 45688888 8999999999999999999999999999999999 9999999999999 699999999986432110001
Q ss_pred h---hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304 148 N---FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (269)
Q Consensus 148 ~---~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~ 224 (269)
. .....+..++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~ 158 (262)
T PRK08140 79 DLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMA 158 (262)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHH
Confidence 1 1111133467788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++++|+++|++++++||+++||||+|+|.+++++.+.+++++|+
T Consensus 159 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia 202 (262)
T PRK08140 159 RALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLA 202 (262)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999886
No 28
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.7e-46 Score=332.72 Aligned_cols=199 Identities=27% Similarity=0.459 Sum_probs=174.9
Q ss_pred CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (269)
Q Consensus 67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~ 146 (269)
+|+++.++.+ +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++........
T Consensus 3 ~~~~l~~~~~-~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~ 80 (265)
T PRK05674 3 DFQTIELIRD-PRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG-RHFSAGADLAWMQQSADLDY 80 (265)
T ss_pred CcceEEEEEc-CCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhcccccc
Confidence 4778888872 378999999999999999999999999999999999999999999999 69999999998643211110
Q ss_pred -hhh-hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304 147 -ENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (269)
Q Consensus 147 -~~~-~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~ 224 (269)
... ....+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++ ++++++|..
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~ 159 (265)
T PRK05674 81 NTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGER 159 (265)
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHH
Confidence 010 11124567788999999999999999999999999999999999999999999999999987655 588999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++++|+++|+.++|+||+++||||+|+|.+++.+.+.+++++++
T Consensus 160 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 203 (265)
T PRK05674 160 AARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLL 203 (265)
T ss_pred HHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876
No 29
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.4e-46 Score=331.00 Aligned_cols=199 Identities=34% Similarity=0.441 Sum_probs=175.8
Q ss_pred CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (269)
Q Consensus 66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~ 145 (269)
.....+.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.......
T Consensus 8 ~~~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~ 84 (266)
T PRK08139 8 TEAPLLLRED--RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAG-KAFCAGHDLKEMRAARGLA 84 (266)
T ss_pred ccCCceEEEe--eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCC-CcceeccCHHHHhcccchh
Confidence 3446788888 899999999999999999999999999999999999999999999999 6999999999865322111
Q ss_pred hhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (269)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~ 225 (269)
........+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++ .++|++++|..+
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~ 163 (266)
T PRK08139 85 YFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQ 163 (266)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHH
Confidence 1011111234667789999999999999999999999999999999999999999999999998764 568999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+++|+++|++++|+||+++||||+|+|++++++.+.+++++|+
T Consensus 164 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 206 (266)
T PRK08139 164 AMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIA 206 (266)
T ss_pred HHHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999886
No 30
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-46 Score=328.86 Aligned_cols=194 Identities=24% Similarity=0.394 Sum_probs=174.8
Q ss_pred eEEEEEEecC---CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304 70 DIIYEKAVGE---GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (269)
Q Consensus 70 ~v~~~~~~~~---gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~ 146 (269)
.|.+++ ++ +|++|+||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++...... .
T Consensus 4 ~i~~~~--~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~-~ 79 (251)
T PRK06023 4 HILVER--PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTE-GCFSAGNDMQDFLAAAMG-G 79 (251)
T ss_pred eEEEEe--ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcCHHHHhhcccc-c
Confidence 477777 55 5999999999999999999999999999999999999999999998 699999999986432111 1
Q ss_pred hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (269)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a 226 (269)
... ...+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++|..++
T Consensus 80 ~~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 158 (251)
T PRK06023 80 TSF-GSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRA 158 (251)
T ss_pred hhh-HHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHH
Confidence 111 1124467778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++++++|+.++++||+++||||+|+|.+++.+++.+++++|+
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~ 200 (251)
T PRK06023 159 FALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELA 200 (251)
T ss_pred HHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999886
No 31
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-46 Score=329.77 Aligned_cols=195 Identities=29% Similarity=0.372 Sum_probs=175.4
Q ss_pred eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhh
Q 024304 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (269)
Q Consensus 70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~ 149 (269)
++.+++ +++|++|+||||++ |++|.+|+.+|.++++++++|+++++|||+|.| ++||+|+|++++...........
T Consensus 3 ~i~~~~--~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 78 (257)
T PRK07658 3 FLSVRV--EDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGADIKEFTSVTEAEQATE 78 (257)
T ss_pred eEEEEe--eCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhccCchhhHHH
Confidence 678888 89999999999986 999999999999999999999999999999998 69999999998743221111111
Q ss_pred hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHH
Q 024304 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREM 229 (269)
Q Consensus 150 ~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l 229 (269)
.......++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..++++|
T Consensus 79 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 158 (257)
T PRK07658 79 LAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEM 158 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHH
Confidence 11223567788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 230 WFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 230 ~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+++|++++++||+++||||+|+|.+++.+++.+++++++
T Consensus 159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~ 197 (257)
T PRK07658 159 MLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIA 197 (257)
T ss_pred HHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876
No 32
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-46 Score=330.06 Aligned_cols=198 Identities=28% Similarity=0.395 Sum_probs=177.9
Q ss_pred cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc-cch
Q 024304 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-ADY 146 (269)
Q Consensus 68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~-~~~ 146 (269)
|+++.++. +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... ...
T Consensus 1 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 77 (255)
T PRK07260 1 FEHIIYEV--EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANG-KVFSVGGDLVEMKRAVDEDDV 77 (255)
T ss_pred CCceEEEE--ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccccCHHHHHhhccccch
Confidence 35688888 899999999999999999999999999999999999999999999998 69999999998643111 111
Q ss_pred hhh--hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304 147 ENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (269)
Q Consensus 147 ~~~--~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~ 224 (269)
... ....+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++++++++++++|..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 157 (255)
T PRK07260 78 QSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLN 157 (255)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHH
Confidence 111 112245677789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++++|+++|++++|+||+++||||+++|.+++.+.+.+++++++
T Consensus 158 ~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 201 (255)
T PRK07260 158 RATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLR 201 (255)
T ss_pred HHHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999886
No 33
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-46 Score=335.85 Aligned_cols=198 Identities=35% Similarity=0.486 Sum_probs=176.7
Q ss_pred cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccC-Ccc--
Q 024304 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD-GYA-- 144 (269)
Q Consensus 68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~-~~~-- 144 (269)
|+.|.+++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++... ...
T Consensus 3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (296)
T PRK08260 3 YETIRYDV--ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG-RAFCAGADLSAGGNTFDLDAP 79 (296)
T ss_pred cceEEEee--eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CCeecCcChHHhhhccccccc
Confidence 45788988 899999999999999999999999999999999999999999999998 799999999986420 000
Q ss_pred ------------ch-hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCC
Q 024304 145 ------------DY-ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG 211 (269)
Q Consensus 145 ------------~~-~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~ 211 (269)
.. ..........+...+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~ 159 (296)
T PRK08260 80 RTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEA 159 (296)
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCc
Confidence 00 00111113456778899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 212 YGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 212 g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+++++|++++|..++++|+++|++++|+||+++||||+|+|.+++.+.+.+++++++
T Consensus 160 g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~ 216 (296)
T PRK08260 160 ASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIA 216 (296)
T ss_pred chhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999886
No 34
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=3.2e-46 Score=329.52 Aligned_cols=194 Identities=30% Similarity=0.432 Sum_probs=172.8
Q ss_pred EEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh--h
Q 024304 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE--N 148 (269)
Q Consensus 71 v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~--~ 148 (269)
|.+++ +++|++|+||||+++|+||.+|+.+|.++++++++|+ +++|||+|.| ++||+|+|++++......... .
T Consensus 1 ~~~e~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~ 76 (256)
T TIGR02280 1 ILSAL--EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAG-RGFCAGQDLSERNPTPGGAPDLGR 76 (256)
T ss_pred CeEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCC-CCcccCcCHHHHhhccccchhHHH
Confidence 35677 8999999999999999999999999999999999999 9999999998 699999999986532111111 1
Q ss_pred hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (269)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~ 228 (269)
.....+..+...+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..++++
T Consensus 77 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~ 156 (256)
T TIGR02280 77 TIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMG 156 (256)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 11111245667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|+++|++++++||+++||||+|+|++++.+++.+++++++
T Consensus 157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 196 (256)
T TIGR02280 157 LAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLA 196 (256)
T ss_pred HHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999886
No 35
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.1e-46 Score=322.99 Aligned_cols=188 Identities=27% Similarity=0.444 Sum_probs=170.7
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHH
Q 024304 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (269)
Q Consensus 78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (269)
+++|++|+||||++ |+||.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++....... .......+.++
T Consensus 15 ~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~-~~~~~~~~~~~ 91 (222)
T PRK05869 15 DAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGH-EIFSAGDDMPELRTLSAQE-ADTAARVRQQA 91 (222)
T ss_pred cCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcCcCcCHHHHhccChhh-HHHHHHHHHHH
Confidence 58999999999986 999999999999999999999999999999988 6999999999865322111 11111224567
Q ss_pred HHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCC
Q 024304 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237 (269)
Q Consensus 158 ~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~ 237 (269)
+.++.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++.++++++|..++++++++|++++
T Consensus 92 ~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~ 171 (222)
T PRK05869 92 VDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFD 171 (222)
T ss_pred HHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 238 AEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 238 a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|+||+++||||+|+|.+++.+++.+++++|+
T Consensus 172 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia 202 (222)
T PRK05869 172 AEEALALGLIDEMVAPDDVYDAAAAWARRFL 202 (222)
T ss_pred HHHHHHCCCCCEeeCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986
No 36
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-46 Score=330.99 Aligned_cols=196 Identities=32% Similarity=0.448 Sum_probs=175.4
Q ss_pred eEEEEEEecCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc----
Q 024304 70 DIIYEKAVGEGIAKITINRPDRRNAFRP-HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA---- 144 (269)
Q Consensus 70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~-~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~---- 144 (269)
.+.++. +++|++||||||+++|++|. +|+.+|.+++++++.|+++++|||+|.| ++||+|.|++++......
T Consensus 4 ~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (266)
T PRK09245 4 FLLVER--DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAG-TAFSSGGNVKDMRARVGAFGGS 80 (266)
T ss_pred ceEEEE--ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCHHHHhhcccccccc
Confidence 478888 89999999999999999995 9999999999999999999999999998 699999999987432110
Q ss_pred chh--hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhC
Q 024304 145 DYE--NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG 222 (269)
Q Consensus 145 ~~~--~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G 222 (269)
... ......+..++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG 160 (266)
T PRK09245 81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIG 160 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhh
Confidence 000 111112345677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 223 ~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
..++++|+++|++++|+||+++||||+|+|.+++++.+.+++++|+
T Consensus 161 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~ 206 (266)
T PRK09245 161 MARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIA 206 (266)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999886
No 37
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.7e-46 Score=327.97 Aligned_cols=195 Identities=32% Similarity=0.465 Sum_probs=175.4
Q ss_pred ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (269)
Q Consensus 69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~ 148 (269)
+.+.++.. +++|++|+||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++..... ..
T Consensus 7 ~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~--~~- 81 (261)
T PRK08138 7 DVVLLERP-ADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGE-KVFAAGADIKEFATAGA--IE- 81 (261)
T ss_pred CCEEEEEc-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCeeCCcCHHHHhccch--hH-
Confidence 44666653 689999999999999999999999999999999999999999999988 69999999998653211 11
Q ss_pred hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (269)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~ 228 (269)
.....+.+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++++
T Consensus 82 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 161 (261)
T PRK08138 82 MYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMR 161 (261)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHH
Confidence 11122456778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|+++|+.++++||+++||||+|+|++++.+++.+++++++
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~ 201 (261)
T PRK08138 162 MALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIA 201 (261)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998875
No 38
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=4.7e-46 Score=329.30 Aligned_cols=197 Identities=28% Similarity=0.390 Sum_probs=176.9
Q ss_pred CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCC-CCceeccccccccccCCccc
Q 024304 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG-TEAFCSGGDQALRTRDGYAD 145 (269)
Q Consensus 67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g-~~~Fc~G~Dl~~~~~~~~~~ 145 (269)
+++.+.++. +++|++||||||+++|+||.+|+.+|.++++++++|+ +++|||+|.| +++||+|+|++++......
T Consensus 2 ~~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~- 77 (261)
T PRK11423 2 SMQYVNVVT--INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD- 77 (261)
T ss_pred CccceEEEe--ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-
Confidence 356788888 8999999999999999999999999999999999988 9999999974 4799999999986432111
Q ss_pred hhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (269)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~ 225 (269)
.... ...+..++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++.++++++|..+
T Consensus 78 ~~~~-~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~ 156 (261)
T PRK11423 78 PLSY-DDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHI 156 (261)
T ss_pred HHHH-HHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHH
Confidence 1111 122456778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+++|+++|++++|+||+++||||+|+|++++++.+.+++++++
T Consensus 157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~ 199 (261)
T PRK11423 157 VKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHIS 199 (261)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999886
No 39
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=5.6e-46 Score=331.18 Aligned_cols=197 Identities=25% Similarity=0.354 Sum_probs=173.6
Q ss_pred ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc----
Q 024304 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA---- 144 (269)
Q Consensus 69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~---- 144 (269)
..+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++......
T Consensus 8 ~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g-~~FcaG~Dl~~~~~~~~~~~~~ 84 (275)
T PLN02664 8 EIIQKSP--NSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAG-DHFCSGIDLKTLNSISEQSSSG 84 (275)
T ss_pred EEEEecC--CCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CceeeCcChHHhhhcccccccc
Confidence 4455555 899999999999999999999999999999999999999999999998 699999999986432110
Q ss_pred c--h--hhhh--hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHH
Q 024304 145 D--Y--ENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMS 218 (269)
Q Consensus 145 ~--~--~~~~--~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~ 218 (269)
. . .... ...+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~ 164 (275)
T PLN02664 85 DRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLP 164 (275)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHH
Confidence 0 0 1111 11234567788999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCC-CcHHHHHHHHHHhhc
Q 024304 219 RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPV-SLFVAYLMSLTKCQA 268 (269)
Q Consensus 219 r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~-e~l~~~a~~la~~la 268 (269)
+++|..++++|+++|+.++|+||+++||||+|+|+ +++++.+.+++++|+
T Consensus 165 ~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia 215 (275)
T PLN02664 165 SIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIA 215 (275)
T ss_pred HHhCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999995 889999999998886
No 40
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.7e-46 Score=327.11 Aligned_cols=192 Identities=33% Similarity=0.453 Sum_probs=171.5
Q ss_pred ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (269)
Q Consensus 69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~ 148 (269)
+.+.+++ +++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++...... .
T Consensus 3 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~--~- 76 (254)
T PRK08252 3 DEVLVER--RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAG-GTFCAGMDLKAFARGERP--S- 76 (254)
T ss_pred ceEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CceEcCcCHHHHhcccch--h-
Confidence 3578888 899999999999999999999999999999999999999999999998 699999999987532111 1
Q ss_pred hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (269)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~ 228 (269)
.....+..+. ...+||||||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++++
T Consensus 77 ~~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 154 (254)
T PRK08252 77 IPGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAME 154 (254)
T ss_pred hhHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHH
Confidence 1111122222 24799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|+++|++++++||+++||||+|+|++++.+++.+++++++
T Consensus 155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~ 194 (254)
T PRK08252 155 LALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIA 194 (254)
T ss_pred HHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999886
No 41
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.8e-46 Score=327.77 Aligned_cols=196 Identities=30% Similarity=0.433 Sum_probs=176.4
Q ss_pred eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc-c-chh
Q 024304 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-A-DYE 147 (269)
Q Consensus 70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~-~-~~~ 147 (269)
++.++. +++|++|+||||++.|++|.+|+.+|.++++++++|+++++|||+|.| ++||+|.|++++..... . ...
T Consensus 4 ~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (260)
T PRK07511 4 ELLSRR--EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNRLLENRAKPPSVQ 80 (260)
T ss_pred eeEEEe--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCC-CCcccCcCHHHHhhcccccchhH
Confidence 477887 899999999999999999999999999999999999999999999998 69999999998653211 1 111
Q ss_pred hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (269)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~ 227 (269)
......+.+++..+.++|||+||+|+|+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++|..+++
T Consensus 81 ~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 160 (260)
T PRK07511 81 AASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLAT 160 (260)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHH
Confidence 11112346677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+|+++|++++++||+++||||+|+|.+++.+++.+++++++
T Consensus 161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~ 201 (260)
T PRK07511 161 ELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLA 201 (260)
T ss_pred HHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998875
No 42
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.2e-46 Score=331.02 Aligned_cols=201 Identities=30% Similarity=0.408 Sum_probs=175.7
Q ss_pred CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc-
Q 024304 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA- 144 (269)
Q Consensus 66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~- 144 (269)
.+++.|.++.. +++|++|+||||+++|++|.+|+.+|.++++++++|+++++|||+|.| ++||+|+|++++......
T Consensus 6 ~~~~~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~ 83 (276)
T PRK05864 6 STMSLVLVDHP-RPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADHKSAGVVPHVE 83 (276)
T ss_pred CCCCceEEeee-cCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcchhhhhcccccc
Confidence 34566777753 689999999999999999999999999999999999999999999998 699999999976421100
Q ss_pred ---chhhh--hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCC-CChHHHHHH
Q 024304 145 ---DYENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFD-AGYGSSIMS 218 (269)
Q Consensus 145 ---~~~~~--~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p-~~g~~~~l~ 218 (269)
..... ....+..++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++| ++|++++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~ 163 (276)
T PRK05864 84 GLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLP 163 (276)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehH
Confidence 00100 111234566788899999999999999999999999999999999999999999999997 677889999
Q ss_pred hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 219 RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 219 r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+++|..++++|+++|++++|+||+++||||+|+|++++++++.++|++|+
T Consensus 164 ~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 213 (276)
T PRK05864 164 RAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMA 213 (276)
T ss_pred hhhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986
No 43
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.6e-46 Score=328.85 Aligned_cols=199 Identities=29% Similarity=0.414 Sum_probs=178.0
Q ss_pred CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCC-CceEEEEEcCCCCceeccccccccccCCccc
Q 024304 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS-SVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (269)
Q Consensus 67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~-~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~ 145 (269)
+|+.+.+++ +++|++|+||||+++|++|.+|+.+|.++++.++.|+ ++++|||+|.| ++||+|+|++++.......
T Consensus 2 ~~~~v~~~~--~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~ 78 (266)
T PRK05981 2 QFKKVTLDF--DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGRGSGGRES 78 (266)
T ss_pred CcceEEEEe--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcccccCHHhhhcccccc
Confidence 467789998 8999999999999999999999999999999999876 59999999998 6999999999865321110
Q ss_pred ----h-hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhh
Q 024304 146 ----Y-ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL 220 (269)
Q Consensus 146 ----~-~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~ 220 (269)
. .......+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~ 158 (266)
T PRK05981 79 DSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL 158 (266)
T ss_pred cccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence 1 11111224567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 221 ~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+|...+++|+++|++++|+||+++||||+|+|.+++++.+.+++++++
T Consensus 159 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~ 206 (266)
T PRK05981 159 VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELA 206 (266)
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999886
No 44
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.8e-46 Score=329.79 Aligned_cols=199 Identities=35% Similarity=0.493 Sum_probs=177.0
Q ss_pred CcceEEEEEEecC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304 67 EFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (269)
Q Consensus 67 ~~~~v~~~~~~~~-gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~ 145 (269)
.|+.|.++. ++ +|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.......
T Consensus 3 ~~~~i~~~~--~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~ 79 (272)
T PRK06210 3 AYDAVLYEV--ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG-RGFCAGADMGELQTIDPSD 79 (272)
T ss_pred CcceEEEEE--CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCcccccCHHHHhccCccc
Confidence 456789988 88 9999999999999999999999999999999999999999999998 6999999999864321110
Q ss_pred hh------hhhh---hhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHH
Q 024304 146 YE------NFGR---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI 216 (269)
Q Consensus 146 ~~------~~~~---~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~ 216 (269)
.. .... ..+.+++..+..+||||||+|+|+|+|||++|+++||+||++++++|++||.++|++|++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 159 (272)
T PRK06210 80 GRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI 159 (272)
T ss_pred ccccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence 00 0100 11234567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 217 MSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 217 l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+++++|..++++|+++|+.++|+||+++||||+|+|.+++++.+.+++++++
T Consensus 160 l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~ 211 (272)
T PRK06210 160 LPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLA 211 (272)
T ss_pred hHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999886
No 45
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=1.2e-45 Score=326.79 Aligned_cols=194 Identities=32% Similarity=0.447 Sum_probs=174.1
Q ss_pred eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhh
Q 024304 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (269)
Q Consensus 70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~ 149 (269)
.+.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++....... ...
T Consensus 4 ~i~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-~~~ 79 (261)
T PRK03580 4 SLHTTR--NGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-ADF 79 (261)
T ss_pred eEEEEE--ECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-hhh
Confidence 478888 8999999999996 599999999999999999999999999999999877999999999865322111 111
Q ss_pred hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHH
Q 024304 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREM 229 (269)
Q Consensus 150 ~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l 229 (269)
. .....++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..+++++
T Consensus 80 ~-~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l 158 (261)
T PRK03580 80 G-PGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEM 158 (261)
T ss_pred h-hhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHH
Confidence 1 112345668889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 230 WFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 230 ~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+++|+.++|+||+++||||+|+|.+++.+.+.+++++|+
T Consensus 159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 197 (261)
T PRK03580 159 VMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLV 197 (261)
T ss_pred HHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999886
No 46
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-45 Score=326.68 Aligned_cols=195 Identities=37% Similarity=0.519 Sum_probs=178.0
Q ss_pred ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (269)
Q Consensus 69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~ 148 (269)
..+.+++ +++|++|+||||++.|++|.+|+.+|.++++++++|+++++|||+|.| ++||+|+|++++....... ..
T Consensus 5 ~~i~~~~--~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~-~~ 80 (259)
T PRK06688 5 TDLLVEL--EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAG-RAFSAGGDIKDFPKAPPKP-PD 80 (259)
T ss_pred CceEEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCccCHHHHhccCcch-HH
Confidence 4688888 899999999999999999999999999999999999999999999999 6999999999875422111 11
Q ss_pred hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (269)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~ 228 (269)
....+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++|..++++
T Consensus 81 -~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~ 159 (259)
T PRK06688 81 -ELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAE 159 (259)
T ss_pred -HHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHH
Confidence 1223467788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|+++|++++++||+++||||+|+|.+++.+.+.+++++++
T Consensus 160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~ 199 (259)
T PRK06688 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLA 199 (259)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876
No 47
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-45 Score=325.90 Aligned_cols=194 Identities=31% Similarity=0.429 Sum_probs=171.5
Q ss_pred ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (269)
Q Consensus 69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~ 148 (269)
+.|.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... ..
T Consensus 3 ~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g-~~FcaG~Dl~~~~~~~~-~~-- 76 (254)
T PRK08259 3 MSVRVER--NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAG-GTFCAGADLKAVGTGRG-NR-- 76 (254)
T ss_pred ceEEEEE--ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcChHHHhcccc-hh--
Confidence 3478888 899999999999999999999999999999999999999999999998 69999999998653211 11
Q ss_pred hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (269)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~ 228 (269)
........+...+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|+.|.++++++|++++|..++++
T Consensus 77 ~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 156 (254)
T PRK08259 77 LHPSGDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMD 156 (254)
T ss_pred hhhhhcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 10000111122334799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|+++|+.++|+||+++||||+|+|.+++++.+.++|++|+
T Consensus 157 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 196 (254)
T PRK08259 157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELA 196 (254)
T ss_pred HHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999886
No 48
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-45 Score=327.72 Aligned_cols=197 Identities=29% Similarity=0.445 Sum_probs=175.7
Q ss_pred ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCC-ccchh
Q 024304 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG-YADYE 147 (269)
Q Consensus 69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~-~~~~~ 147 (269)
+.+.++. +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++.... .....
T Consensus 17 ~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~~~~~~ 93 (277)
T PRK08258 17 RHFLWEV--DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDVHEIIGPLTKMDMP 93 (277)
T ss_pred cceEEEE--ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCC-CCcccccCHHHHhccccccChh
Confidence 4788888 899999999999999999999999999999999999999999999998 6999999999864211 01111
Q ss_pred hh--hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCC-CChHHHHHHhhhCHH
Q 024304 148 NF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFD-AGYGSSIMSRLVGPK 224 (269)
Q Consensus 148 ~~--~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p-~~g~~~~l~r~~G~~ 224 (269)
.. ....+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++| ++|++++|++++|..
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~ 173 (277)
T PRK08258 94 ELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQG 173 (277)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHH
Confidence 11 111234677889999999999999999999999999999999999999999999999995 678899999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++++|+++|++++|+||+++||||+|+|.+++++.+.+++++|+
T Consensus 174 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 217 (277)
T PRK08258 174 RASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLA 217 (277)
T ss_pred HHHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999886
No 49
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.2e-46 Score=326.02 Aligned_cols=193 Identities=32% Similarity=0.432 Sum_probs=173.1
Q ss_pred eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhh
Q 024304 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (269)
Q Consensus 70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~ 149 (269)
.+.++. +++|++|+||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++...........
T Consensus 4 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 80 (249)
T PRK05870 4 PVLLDV--DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAG-KAFCAGADLTALGAAPGRPAEDG 80 (249)
T ss_pred cEEEEc--cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCeecCcChHHHhcccccchHHH
Confidence 477887 899999999999999999999999999999999999999999999998 69999999998754221111111
Q ss_pred hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHH
Q 024304 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREM 229 (269)
Q Consensus 150 ~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l 229 (269)
. ..+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++|..++++|
T Consensus 81 ~-~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l 159 (249)
T PRK05870 81 L-RRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAA 159 (249)
T ss_pred H-HHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHH
Confidence 1 123455667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 230 WFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 230 ~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+++|+.++++||+++||||+|+ +++.+++.+++++++
T Consensus 160 ~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la 196 (249)
T PRK05870 160 LLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPA 196 (249)
T ss_pred HHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHH
Confidence 9999999999999999999999 789999999999886
No 50
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-45 Score=326.18 Aligned_cols=197 Identities=31% Similarity=0.512 Sum_probs=172.8
Q ss_pred cceEEEEEEec-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc-cc
Q 024304 68 FTDIIYEKAVG-EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-AD 145 (269)
Q Consensus 68 ~~~v~~~~~~~-~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~-~~ 145 (269)
|+.+.+++ + ++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++..... ..
T Consensus 3 ~~~~~~~~--~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~ 79 (262)
T PRK07468 3 FETIRIAV--DARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMRAQMTADR 79 (262)
T ss_pred cceEEEEE--cCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CcccCCcCHHHHHhhcccch
Confidence 45678887 5 69999999999999999999999999999999999999999999998 69999999998642111 11
Q ss_pred hhhh-hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304 146 YENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (269)
Q Consensus 146 ~~~~-~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~ 224 (269)
.... ....+..++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++++++++ +++|..
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~ 158 (262)
T PRK07468 80 ATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEA 158 (262)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHH
Confidence 1111 11224567788999999999999999999999999999999999999999999999999999888744 559999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++++|+++|++++++||+++||||+|+|.+++++.+.+++++++
T Consensus 159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~ 202 (262)
T PRK07468 159 NARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYL 202 (262)
T ss_pred HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876
No 51
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=2.3e-45 Score=325.54 Aligned_cols=194 Identities=37% Similarity=0.483 Sum_probs=173.7
Q ss_pred ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (269)
Q Consensus 69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~ 148 (269)
+.|.++.. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++...... .
T Consensus 9 ~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~--~- 83 (265)
T PLN02888 9 NLILVPKS-RNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSG-RAFCSGVDLTAAEEVFKG--D- 83 (265)
T ss_pred CeEEEEec-cCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CcccCCCCHHHHHhhccc--h-
Confidence 45667642 689999999999999999999999999999999999999999999998 699999999875421110 0
Q ss_pred hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (269)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~ 228 (269)
. .....+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++++
T Consensus 84 ~-~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 162 (265)
T PLN02888 84 V-KDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRARE 162 (265)
T ss_pred h-hHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHH
Confidence 0 011234566788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|+++|++++|+||+++||||+|+|.+++.+++.+++++++
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 202 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAII 202 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999886
No 52
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.9e-45 Score=322.18 Aligned_cols=194 Identities=27% Similarity=0.367 Sum_probs=177.1
Q ss_pred cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (269)
Q Consensus 68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~ 147 (269)
++.+.++. +++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.| ++||+|.|++++..... ...
T Consensus 4 ~~~~~~~~--~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~-~~~ 79 (249)
T PRK07110 4 KVVELREV--EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP-NYFATGGTQEGLLSLQT-GKG 79 (249)
T ss_pred CceEEEEe--eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCcChHHHhhccc-hhh
Confidence 46778888 899999999999999999999999999999999999999999999998 69999999988643221 111
Q ss_pred hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (269)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~ 227 (269)
.+. ..+++..+.++|||+||+|+|+|+|||++|+++||+||++++++|++||.++|++|++++++++++++|..+++
T Consensus 80 ~~~---~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~ 156 (249)
T PRK07110 80 TFT---EANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQ 156 (249)
T ss_pred hHh---hHHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHH
Confidence 111 14677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+|+++|++++++||+++||||+|+|++++.+++.+++++++
T Consensus 157 ~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 197 (249)
T PRK07110 157 EMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLA 197 (249)
T ss_pred HHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886
No 53
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-45 Score=325.55 Aligned_cols=197 Identities=23% Similarity=0.349 Sum_probs=175.6
Q ss_pred CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (269)
Q Consensus 67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~ 146 (269)
+++.+.++. +++|++|+||||+++|++|.+|+.+|.++++++ .|+++++|||+|.| ++||+|+|++++........
T Consensus 4 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 79 (260)
T PRK07659 4 KMESVVVKY--EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNG-RGFSAGGDIKMMLSSNDESK 79 (260)
T ss_pred CCceEEEEe--eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCC-CCcccccCHHHHhhccCchh
Confidence 345788988 899999999999999999999999999999999 58899999999998 69999999998753221111
Q ss_pred hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (269)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a 226 (269)
.......+.+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a 159 (260)
T PRK07659 80 FDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKA 159 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHH
Confidence 11111234567778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++|+++|+.++|+||+++||||+|+ ++++.+++.+++++|+
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~ 200 (260)
T PRK07659 160 KQIIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWL 200 (260)
T ss_pred HHHHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 7889999999999886
No 54
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=4.8e-45 Score=328.96 Aligned_cols=202 Identities=53% Similarity=0.898 Sum_probs=175.9
Q ss_pred CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCC------Cceecccccccccc
Q 024304 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT------EAFCSGGDQALRTR 140 (269)
Q Consensus 67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~------~~Fc~G~Dl~~~~~ 140 (269)
.+.+|.+++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+ ++||+|+|++.+..
T Consensus 21 ~~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~ 100 (302)
T PRK08321 21 DFTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGR 100 (302)
T ss_pred CceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhcc
Confidence 466788876446889999999999999999999999999999999999999999999883 69999999987532
Q ss_pred CCc-----c--ch-h--hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEe-CCceEecCCCCcccCC
Q 024304 141 DGY-----A--DY-E--NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFD 209 (269)
Q Consensus 141 ~~~-----~--~~-~--~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~-~~a~f~~~~~~~Gl~p 209 (269)
... . .. . ........++...+..+|||+||+|||+|+|||++|+++||+||++ ++++|++||.++|++|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p 180 (302)
T PRK08321 101 DGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFD 180 (302)
T ss_pred ccccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCC
Confidence 110 0 00 0 0111112345667889999999999999999999999999999999 6899999999999999
Q ss_pred CChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 210 AGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 210 ~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+++++.+|++++|..++++|+++|+.++|+||+++||||+++|++++++++.+++++|+
T Consensus 181 ~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 239 (302)
T PRK08321 181 GGYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREIN 239 (302)
T ss_pred CchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999886
No 55
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-44 Score=320.99 Aligned_cols=196 Identities=30% Similarity=0.423 Sum_probs=171.5
Q ss_pred cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (269)
Q Consensus 68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~ 147 (269)
++.+.+++ +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.........
T Consensus 2 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 78 (262)
T PRK07509 2 MDRVSVTI--EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEG-GAFCAGLDVKSVASSPGNAVK 78 (262)
T ss_pred CceEEEEe--eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCcCCCcCHHHHhcccchhhh
Confidence 35688888 999999999999999999999999999999999999999999999998 699999999986532111111
Q ss_pred hhhh------hhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhh
Q 024304 148 NFGR------LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221 (269)
Q Consensus 148 ~~~~------~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~ 221 (269)
.... ..+.++...+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 158 (262)
T PRK07509 79 LLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLV 158 (262)
T ss_pred hHhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHh
Confidence 1100 1123455677899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 222 G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|..++++|+++|++++|+||+++||||+|++ ++.+.+.+++++++
T Consensus 159 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~ 203 (262)
T PRK07509 159 RKDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIA 203 (262)
T ss_pred CHHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHH
Confidence 9999999999999999999999999999995 36778888888775
No 56
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=3.3e-45 Score=320.96 Aligned_cols=192 Identities=38% Similarity=0.613 Sum_probs=175.7
Q ss_pred EEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhh
Q 024304 73 YEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL 152 (269)
Q Consensus 73 ~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~ 152 (269)
|+. +++|++|+||||++.|+||.+|+.+|.++|+.++.|+++++||++|.+ ++||+|.|++++.... .........
T Consensus 2 ~~~--~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~-~~F~~G~Dl~~~~~~~-~~~~~~~~~ 77 (245)
T PF00378_consen 2 YEI--EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGG-KAFCAGADLKEFLNSD-EEEAREFFR 77 (245)
T ss_dssp EEE--ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEEST-SESBESB-HHHHHHHH-HHHHHHHHH
T ss_pred EEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecc-cccccccchhhhhccc-cccccccch
Confidence 566 899999999999999999999999999999999999999999999987 6999999999876541 111112233
Q ss_pred hHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHc
Q 024304 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL 232 (269)
Q Consensus 153 ~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~lt 232 (269)
.+..++..+..+|||+||+|+|+|+|||++|+++||+||+++++.|++||.++|++|+++++.+|+|++|..++++++++
T Consensus 78 ~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~ 157 (245)
T PF00378_consen 78 RFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLT 157 (245)
T ss_dssp HHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccc
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 233 ARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 233 g~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|++++|+||+++||||+|+|++++.+.+.+++++++
T Consensus 158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~ 193 (245)
T PF00378_consen 158 GEPISAEEALELGLVDEVVPDEELDEEALELAKRLA 193 (245)
T ss_dssp TCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHH
T ss_pred cccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHh
Confidence 999999999999999999999999999999999986
No 57
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-44 Score=319.58 Aligned_cols=194 Identities=28% Similarity=0.417 Sum_probs=171.2
Q ss_pred cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (269)
Q Consensus 68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~ 147 (269)
|+.|.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.........
T Consensus 3 ~~~i~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~~~ 78 (257)
T PRK06495 3 MSQLKLEV--SDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGADLKGRPDVIKGPGD 78 (257)
T ss_pred cceEEEEe--eCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCcccCcCHHhHhhccCCchh
Confidence 45788888 8999999999998 4999999999999999999999999999999998 699999999986432111111
Q ss_pred -hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304 148 -NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (269)
Q Consensus 148 -~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a 226 (269)
.........+...+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|+. ++++++++++|..++
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a 155 (257)
T PRK06495 79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT 155 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence 1111223566778999999999999999999999999999999999999999999999997 456789999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++|+++|++++|+||+++||||+++|++++.+.+.+++++++
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~ 197 (257)
T PRK06495 156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIA 197 (257)
T ss_pred HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999886
No 58
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.4e-44 Score=335.11 Aligned_cols=197 Identities=19% Similarity=0.269 Sum_probs=171.3
Q ss_pred CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc-
Q 024304 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD- 145 (269)
Q Consensus 67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~- 145 (269)
...+|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.......
T Consensus 35 ~~~~V~~e~--~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~G-kaFcAGgDl~~l~~~~~~~~ 111 (401)
T PLN02157 35 LDYQVLVEG--SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG-RAFCAGGDIVSLYHLRKRGS 111 (401)
T ss_pred CCCceEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCccCCcCHHHHHhhccccc
Confidence 346688888 899999999999999999999999999999999999999999999999 7999999999875321111
Q ss_pred hhhhh--hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH
Q 024304 146 YENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (269)
Q Consensus 146 ~~~~~--~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~ 223 (269)
..... ....+.+...|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.
T Consensus 112 ~~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~ 191 (401)
T PLN02157 112 PDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR 191 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH
Confidence 11011 1112345677899999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
.+++|++||+.++|+||+++||||++||.+++ +.+.+++++++
T Consensus 192 -~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~ 234 (401)
T PLN02157 192 -LGEYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLL 234 (401)
T ss_pred -HHHHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHH
Confidence 89999999999999999999999999999998 45557766653
No 59
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-44 Score=317.35 Aligned_cols=186 Identities=26% Similarity=0.323 Sum_probs=164.9
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHH
Q 024304 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (269)
Q Consensus 78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (269)
+++|++|+||||++ |+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++...............+..+
T Consensus 9 ~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 86 (249)
T PRK07938 9 EPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNAGVDIKELQATPGFTALIDANRGCFAA 86 (249)
T ss_pred CCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCC-CceecCcCHHHHhhccchhHHHHHHHHHHHH
Confidence 78999999999985 999999999999999999999999999999998 6999999998864321111100011123456
Q ss_pred HHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCC
Q 024304 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237 (269)
Q Consensus 158 ~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~ 237 (269)
+..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++ +++.+|++++|..++++|+++|+.++
T Consensus 87 ~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~~ 163 (249)
T PRK07938 87 FRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATIT 163 (249)
T ss_pred HHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcCC
Confidence 778899999999999999999999999999999999999999999999986 45678999999999999999999999
Q ss_pred HHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 238 AEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 238 a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|+||+++||||+|+|++++++++.+++++|+
T Consensus 164 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 194 (249)
T PRK07938 164 AAELHHFGSVEEVVPRDQLDEAALEVARKIA 194 (249)
T ss_pred HHHHHHCCCccEEeCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999886
No 60
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-44 Score=322.40 Aligned_cols=197 Identities=36% Similarity=0.531 Sum_probs=172.1
Q ss_pred CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc---
Q 024304 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY--- 143 (269)
Q Consensus 67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~--- 143 (269)
+++.|.++. +++|++|+||||+++|+||.+|+.+|.++++++++|+++++|||||.| ++||+|+|++++.....
T Consensus 2 ~~~~v~~~~--~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G-~~FcaG~Dl~~~~~~~~~~~ 78 (288)
T PRK08290 2 EYEYVRYEV--AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAG-KHFSAGHDLGSGTPGRDRDP 78 (288)
T ss_pred CCceEEEEe--eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CccccCCCcccccccccccc
Confidence 356788988 899999999999999999999999999999999999999999999999 69999999997632110
Q ss_pred ---------------cchh-hhh--hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCc
Q 024304 144 ---------------ADYE-NFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV 205 (269)
Q Consensus 144 ---------------~~~~-~~~--~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~ 205 (269)
.... ... ...+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l 158 (288)
T PRK08290 79 GPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM 158 (288)
T ss_pred ccccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence 0000 010 0123456678899999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 206 GSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 206 Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|+ |+ .+++++++++|..++++|++||+.++|+||+++||||+|+|.+++++.+.+++++|+
T Consensus 159 Gl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la 219 (288)
T PRK08290 159 GI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIA 219 (288)
T ss_pred Cc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHH
Confidence 98 43 456778999999999999999999999999999999999999999999999999886
No 61
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.7e-44 Score=320.13 Aligned_cols=197 Identities=24% Similarity=0.282 Sum_probs=169.3
Q ss_pred ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhc-----CCCceEEEEEcCCCCceeccccccccccC-C
Q 024304 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARD-----DSSVGVIILTGKGTEAFCSGGDQALRTRD-G 142 (269)
Q Consensus 69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~-----d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~-~ 142 (269)
..|.++. +++|++|+|| |+++|+||.+|+.+|.+++++++. |+++++|||+|.++++||+|+|++++... .
T Consensus 17 ~~i~~e~--~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~ 93 (287)
T PRK08788 17 LRVYYEE--ERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIR 93 (287)
T ss_pred eEEEEEc--cCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhcc
Confidence 3456665 8999999996 999999999999999999999998 89999999999944799999999986421 1
Q ss_pred ccchhhhhh--hhHHHHHHHHh---cCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHH
Q 024304 143 YADYENFGR--LNVLDLQVQIR---RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIM 217 (269)
Q Consensus 143 ~~~~~~~~~--~~~~~l~~~i~---~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l 217 (269)
......... ..+.+.+..+. .+|||+||+|+|+|+|||++|+++||+||++++++|++||+++|++|++|+++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l 173 (287)
T PRK08788 94 AGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFL 173 (287)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHH
Confidence 111111111 11222233333 7999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 218 SRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 218 ~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++++|..++++|+++|+.++|+||+++||||+++|.+++.+++.+++++|+
T Consensus 174 ~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia 224 (287)
T PRK08788 174 ARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSK 224 (287)
T ss_pred HHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987
No 62
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-44 Score=325.16 Aligned_cols=198 Identities=29% Similarity=0.422 Sum_probs=172.6
Q ss_pred CCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc
Q 024304 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (269)
Q Consensus 65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~ 144 (269)
..+|+.|.++. +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++......
T Consensus 6 ~~~~~~v~~e~--~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G-~~FcaG~Dl~~~~~~~~~ 82 (302)
T PRK08272 6 LDNLKTMTYEV--TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG-KGFCAGYDLSAYAEGSSS 82 (302)
T ss_pred cCCCCeEEEEe--ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCcCHHHHhhcccc
Confidence 45678899998 899999999999999999999999999999999999999999999999 699999999886432110
Q ss_pred c---h--------------hhhh-------hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEec
Q 024304 145 D---Y--------------ENFG-------RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200 (269)
Q Consensus 145 ~---~--------------~~~~-------~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~ 200 (269)
. . ..+. ......++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~ 162 (302)
T PRK08272 83 GGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGY 162 (302)
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecC
Confidence 0 0 0000 11234566788899999999999999999999999999999999999999
Q ss_pred CCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 201 TGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 201 ~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
||.++|.+|+. ..+++++|..+|++|++||++++|+||+++||||+|+|.+++++++.++|++|+
T Consensus 163 pe~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia 227 (302)
T PRK08272 163 PPTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIA 227 (302)
T ss_pred cchhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHH
Confidence 99998666643 367889999999999999999999999999999999999999999999999986
No 63
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=3.6e-44 Score=319.77 Aligned_cols=200 Identities=18% Similarity=0.288 Sum_probs=174.6
Q ss_pred CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCC-CceeccccccccccCCcc
Q 024304 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT-EAFCSGGDQALRTRDGYA 144 (269)
Q Consensus 66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~-~~Fc~G~Dl~~~~~~~~~ 144 (269)
...+.|.+++. +++|++|+||||+ .|+||.+|+.+|.++++++++|+++++|||||.|+ ++||+|+|++++......
T Consensus 8 ~~~~~i~~~~~-~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~ 85 (278)
T PLN03214 8 GATPGVRVDRR-PGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTS 85 (278)
T ss_pred CCCCceEEEEc-CCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccc
Confidence 34457888762 4889999999985 69999999999999999999999999999999873 699999999986421111
Q ss_pred ch--hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCccc-CCCChHHHHHHhhh
Q 024304 145 DY--ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGS-FDAGYGSSIMSRLV 221 (269)
Q Consensus 145 ~~--~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl-~p~~g~~~~l~r~~ 221 (269)
.. ..+ .....+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||.++|+ +|++++++++++++
T Consensus 86 ~~~~~~~-~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~ 164 (278)
T PLN03214 86 AARYAEF-WLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVI 164 (278)
T ss_pred hHHHHHH-HHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhc
Confidence 11 111 111245667889999999999999999999999999999999999999999999999 59898999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 222 G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|..++++|+++|+.++++||+++||||+|+|.+++.+.+.+++++|+
T Consensus 165 G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~ 211 (278)
T PLN03214 165 DRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERAL 211 (278)
T ss_pred CHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999886
No 64
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.1e-44 Score=321.15 Aligned_cols=194 Identities=28% Similarity=0.398 Sum_probs=165.2
Q ss_pred cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccc-ccc----C-
Q 024304 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQAL-RTR----D- 141 (269)
Q Consensus 68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~-~~~----~- 141 (269)
|+.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|+++ +.. .
T Consensus 4 ~~~v~~~~--~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G-~~FcaG~Dl~~~~~~~~~~~~ 80 (298)
T PRK12478 4 FQTLLYTT--AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG-RAFSGGYDFGGGFQHWGEAMM 80 (298)
T ss_pred ceEEEEec--cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCccccccccchhcc
Confidence 45688888 999999999999999999999999999999999999999999999999 79999999985 211 0
Q ss_pred --Cc-cchhhh-----hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCc-ccCCCCh
Q 024304 142 --GY-ADYENF-----GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV-GSFDAGY 212 (269)
Q Consensus 142 --~~-~~~~~~-----~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~-Gl~p~~g 212 (269)
.. ...... .......++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++ |++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~-- 158 (298)
T PRK12478 81 TDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT-- 158 (298)
T ss_pred cccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch--
Confidence 00 000111 00011234557889999999999999999999999999999999999999999997 88752
Q ss_pred HHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 213 GSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 213 ~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+++ .+++|..++++|+++|++++|+||+++||||+|||++++++++.++|++|+
T Consensus 159 ~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la 212 (298)
T PRK12478 159 GMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELA 212 (298)
T ss_pred hHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence 233 356999999999999999999999999999999999999999999999886
No 65
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.2e-44 Score=311.88 Aligned_cols=184 Identities=32% Similarity=0.453 Sum_probs=161.3
Q ss_pred EEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhh
Q 024304 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (269)
Q Consensus 71 v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~ 150 (269)
+.++. +++|++||||||+++|+||.+|+.+|.+++++++++ ++++|||+|.| ++||+|+|++.... ....
T Consensus 2 ~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g-~~F~aG~Dl~~~~~-----~~~~- 71 (243)
T PRK07854 2 IGVTR--DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQG-TVFCAGADLSGDVY-----ADDF- 71 (243)
T ss_pred ceEEE--eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCC-CceecccCCccchh-----HHHH-
Confidence 56677 899999999999999999999999999999999865 89999999998 69999999985210 1111
Q ss_pred hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHH
Q 024304 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (269)
Q Consensus 151 ~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ 230 (269)
...+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..++++|+
T Consensus 72 ~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ 151 (243)
T PRK07854 72 PDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML 151 (243)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence 11245667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 231 FLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 231 ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++|++++|+||+++||||+|++.+ .+.+++++|+
T Consensus 152 ltg~~~~a~eA~~~Glv~~v~~~~----~a~~~a~~l~ 185 (243)
T PRK07854 152 LGAEKLTAEQALATGMANRIGTLA----DAQAWAAEIA 185 (243)
T ss_pred HcCCCcCHHHHHHCCCcccccCHH----HHHHHHHHHH
Confidence 999999999999999999998744 4555555543
No 66
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=4.6e-44 Score=327.37 Aligned_cols=188 Identities=25% Similarity=0.364 Sum_probs=166.0
Q ss_pred ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc-hh
Q 024304 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD-YE 147 (269)
Q Consensus 69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~-~~ 147 (269)
+.|.+++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++....... ..
T Consensus 3 ~~v~~~~--~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 80 (342)
T PRK05617 3 DEVLAEV--EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPL 80 (342)
T ss_pred ceEEEEE--ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCch
Confidence 3578888 89999999999999999999999999999999999999999999999967999999999864311100 11
Q ss_pred h--hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304 148 N--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (269)
Q Consensus 148 ~--~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~ 225 (269)
. ........+...+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++.| ..
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~ 159 (342)
T PRK05617 81 AADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-AL 159 (342)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HH
Confidence 0 11112345677889999999999999999999999999999999999999999999999999999999999877 68
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHH
Q 024304 226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAY 259 (269)
Q Consensus 226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~ 259 (269)
+++|+++|+.++|+||+++||||+|+|++++++.
T Consensus 160 a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~ 193 (342)
T PRK05617 160 GTYLALTGARISAADALYAGLADHFVPSADLPAL 193 (342)
T ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHH
Confidence 9999999999999999999999999999998876
No 67
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-43 Score=311.03 Aligned_cols=187 Identities=26% Similarity=0.343 Sum_probs=166.2
Q ss_pred EEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhh
Q 024304 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (269)
Q Consensus 71 v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~ 150 (269)
|.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| +.||+|+|++++.... ....
T Consensus 2 i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~---~~~~- 74 (248)
T PRK06072 2 IKVES--REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEFAPDF---AIDL- 74 (248)
T ss_pred eEEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhhh---HHHH-
Confidence 45677 899999999999999999999999999999999999999999999998 6999999999764311 1111
Q ss_pred hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHH
Q 024304 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (269)
Q Consensus 151 ~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ 230 (269)
...+..+...+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++|. ++++++
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~ll 153 (248)
T PRK06072 75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEIL 153 (248)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHH
Confidence 1224566778899999999999999999999999999999999999999999999999999999999999997 899999
Q ss_pred HcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 231 FLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 231 ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++|++++|+||+++||||.+ +++.+++.++|++|+
T Consensus 154 l~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la 188 (248)
T PRK06072 154 VLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRIS 188 (248)
T ss_pred HhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHH
Confidence 99999999999999999963 467788888888876
No 68
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-43 Score=313.02 Aligned_cols=195 Identities=28% Similarity=0.428 Sum_probs=170.6
Q ss_pred cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (269)
Q Consensus 68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~ 147 (269)
.+.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.........
T Consensus 5 ~~~i~~~~--~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 81 (260)
T PRK07827 5 DTLVRYAV--DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTG-GTFCAGADLSEAGGGGGDPYD 81 (260)
T ss_pred CcceEEEe--eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCcChHHHhhcccCchh
Confidence 35678888 899999999999999999999999999999999999999999999998 699999999986532111111
Q ss_pred --hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304 148 --NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (269)
Q Consensus 148 --~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~ 225 (269)
......+.+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++++++. ..+
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~ 160 (260)
T PRK07827 82 AAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRA 160 (260)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHH
Confidence 11112345677889999999999999999999999999999999999999999999999999999999999875 568
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+++|+++|+.++|+||+++||||++++ ++++.+.+++++++
T Consensus 161 a~~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la 201 (260)
T PRK07827 161 AARYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLR 201 (260)
T ss_pred HHHHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHH
Confidence 999999999999999999999999974 58888888888876
No 69
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=1.7e-43 Score=326.70 Aligned_cols=195 Identities=26% Similarity=0.370 Sum_probs=171.3
Q ss_pred CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (269)
Q Consensus 66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~ 145 (269)
.....|.++. +++|++|+||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.| ++||+|+|++.+.......
T Consensus 6 ~~~~~v~~~~--~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G-~~FcAGgDl~~l~~~~~~~ 82 (381)
T PLN02988 6 ASQSQVLVEE--KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVRDIEQG 82 (381)
T ss_pred ccCCceEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCcccCcCHHHHHhhhccc
Confidence 3445688888 899999999999999999999999999999999999999999999999 6999999999874221111
Q ss_pred h-hhhh--hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhC
Q 024304 146 Y-ENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG 222 (269)
Q Consensus 146 ~-~~~~--~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G 222 (269)
. .... ....+.+...+.++|||+||+|+|+|+|||++|+++||+||++++++|++||.++|++|++|++++|+|++|
T Consensus 83 ~~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G 162 (381)
T PLN02988 83 NWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPG 162 (381)
T ss_pred chhHHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHH
Confidence 0 0000 011123456788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHH
Q 024304 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLT 264 (269)
Q Consensus 223 ~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la 264 (269)
. .+++|++||++++|+||+++||+|++||.+++++.+.+++
T Consensus 163 ~-~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la 203 (381)
T PLN02988 163 F-FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC 203 (381)
T ss_pred H-HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH
Confidence 7 7999999999999999999999999999999999999887
No 70
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=3.6e-43 Score=309.19 Aligned_cols=187 Identities=21% Similarity=0.375 Sum_probs=161.0
Q ss_pred EEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhh
Q 024304 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (269)
Q Consensus 71 v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~ 150 (269)
|.++. +++|++|+||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|+.++... .....
T Consensus 3 v~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g-~~FcaG~Dl~~~~~~---~~~~~- 74 (251)
T TIGR03189 3 VWLER--DGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEG-PHFSFGASVAEHMPD---QCAAM- 74 (251)
T ss_pred EEEEe--eCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCC-CceecCcChhhhCch---hHHHH-
Confidence 67777 8899999999997 5999999999999999999999999999999999 699999999875311 11111
Q ss_pred hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHH
Q 024304 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (269)
Q Consensus 151 ~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ 230 (269)
.....+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++ ++++|++++|..++++|+
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~ 153 (251)
T TIGR03189 75 LASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLL 153 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHH
Confidence 1224567778999999999999999999999999999999999999999999999999874 577999999999999999
Q ss_pred HcCCCCCHHHHHHcCccceecCCCcHHHHHHHH-HHhhc
Q 024304 231 FLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSL-TKCQA 268 (269)
Q Consensus 231 ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~l-a~~la 268 (269)
++|++++|+||+++||||+|+|+++ +.+.++ +++++
T Consensus 154 ltg~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la 190 (251)
T TIGR03189 154 YSGRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPA 190 (251)
T ss_pred HcCCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHH
Confidence 9999999999999999999998643 334443 45543
No 71
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=5.7e-43 Score=324.26 Aligned_cols=188 Identities=20% Similarity=0.256 Sum_probs=166.4
Q ss_pred cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc-h
Q 024304 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD-Y 146 (269)
Q Consensus 68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~-~ 146 (269)
...|.+++ .+++++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++.+....... .
T Consensus 41 ~~~v~~e~--~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~G-kaFcAGgDl~~l~~~~~~~~~ 117 (407)
T PLN02851 41 QDQVLVEG--RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSLYHLINEGNV 117 (407)
T ss_pred CCCeEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHHhhccccch
Confidence 35688888 899999999999999999999999999999999999999999999999 7999999999875321111 1
Q ss_pred hhh--hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304 147 ENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (269)
Q Consensus 147 ~~~--~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~ 224 (269)
... .....+++...+.++|||+||+|+|.|+|||++|+++||+||++++++|++||.++|++|++|++++|+|+.|.
T Consensus 118 ~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~- 196 (407)
T PLN02851 118 EECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY- 196 (407)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-
Confidence 111 11224566778889999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHH
Q 024304 225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAY 259 (269)
Q Consensus 225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~ 259 (269)
.+++|++||++++|+||+++||+|+++|++++.+.
T Consensus 197 ~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l 231 (407)
T PLN02851 197 LGEYLALTGQKLNGVEMIACGLATHYCLNARLPLI 231 (407)
T ss_pred HHHHHHHhCCcCCHHHHHHCCCceeecCHhhHHHH
Confidence 59999999999999999999999999999988443
No 72
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=4.1e-43 Score=317.45 Aligned_cols=188 Identities=30% Similarity=0.453 Sum_probs=165.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhh--hhhhHHHHH
Q 024304 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF--GRLNVLDLQ 158 (269)
Q Consensus 81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~--~~~~~~~l~ 158 (269)
+++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++........... ....+.++.
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 345999999999999999999999999999999999999999999679999999998653211111111 111234667
Q ss_pred HHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCH
Q 024304 159 VQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA 238 (269)
Q Consensus 159 ~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a 238 (269)
..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++++|++++|
T Consensus 118 ~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA 197 (360)
T TIGR03200 118 SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSA 197 (360)
T ss_pred HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCccceecCCCcH------------HHHHHHHHHhhc
Q 024304 239 EEAEKMGLVNTVVPVSLF------------VAYLMSLTKCQA 268 (269)
Q Consensus 239 ~eA~~~GLv~~vv~~e~l------------~~~a~~la~~la 268 (269)
+||+++||||+|+|.+++ +++++.+++.+.
T Consensus 198 ~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 239 (360)
T TIGR03200 198 HKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVH 239 (360)
T ss_pred HHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhc
Confidence 999999999999999998 788888777654
No 73
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=6.3e-43 Score=308.36 Aligned_cols=193 Identities=22% Similarity=0.273 Sum_probs=164.0
Q ss_pred CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (269)
Q Consensus 67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~ 146 (269)
+|..+.++. +++|++|+||||+++|+||.+|+.+|.++++.++ +++++|||+|.| ++||+|+|++++........
T Consensus 2 ~~~~i~~~~--~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g-~~FsaG~Dl~~~~~~~~~~~ 76 (255)
T PRK07112 2 DYQTIRVRQ--QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLP-EVFCFGADFSAIAEKPDAGR 76 (255)
T ss_pred CCceEEEEe--eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCC-CCcccCcCHHHHhhccccch
Confidence 356789998 8999999999999999999999999999999998 359999999998 69999999998653211111
Q ss_pred h-hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304 147 E-NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (269)
Q Consensus 147 ~-~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~ 225 (269)
. ......+..++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++ ..++++++|..+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~ 155 (255)
T PRK07112 77 ADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQK 155 (255)
T ss_pred hhhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHH
Confidence 1 11112234677889999999999999999999999999999999999999999999999999864 567999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhh
Q 024304 226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQ 267 (269)
Q Consensus 226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~l 267 (269)
+++|+++|++++|+||+++||||+|+|+++. .+.++++++
T Consensus 156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l 195 (255)
T PRK07112 156 AHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRL 195 (255)
T ss_pred HHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHH
Confidence 9999999999999999999999999997652 344555554
No 74
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=5.7e-43 Score=323.92 Aligned_cols=193 Identities=24% Similarity=0.294 Sum_probs=167.5
Q ss_pred CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (269)
Q Consensus 66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~ 145 (269)
+.+..|.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.......
T Consensus 8 ~~~~~v~~~~--~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~ 84 (379)
T PLN02874 8 PAEEVVLGEE--KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAG-RAFSAGGDLKMFYDGRESD 84 (379)
T ss_pred CCCCceEEEE--ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCccCHHHHHhhcccc
Confidence 3456688888 899999999999999999999999999999999999999999999998 6999999999864321111
Q ss_pred hhhh-hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304 146 YENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (269)
Q Consensus 146 ~~~~-~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~ 224 (269)
.... .......+...|.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++++|++|.
T Consensus 85 ~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~- 163 (379)
T PLN02874 85 DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH- 163 (379)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-
Confidence 1101 11122345668889999999999999999999999999999999999999999999999999999999999885
Q ss_pred HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHH
Q 024304 225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMS 262 (269)
Q Consensus 225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~ 262 (269)
.+++|++||++++|+||+++||||+|||++++.+.+.+
T Consensus 164 ~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~ 201 (379)
T PLN02874 164 LGEYLALTGARLNGKEMVACGLATHFVPSEKLPELEKR 201 (379)
T ss_pred HHHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHH
Confidence 89999999999999999999999999999998874433
No 75
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.9e-43 Score=302.82 Aligned_cols=191 Identities=23% Similarity=0.306 Sum_probs=169.9
Q ss_pred eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhh
Q 024304 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (269)
Q Consensus 70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~ 149 (269)
.|.+++ +++|++|+|||| +.|+||.+|+.+|.++++.++ +++++|||+|.| ++||+|+|++++... .......
T Consensus 4 ~i~~~~--~~~v~~itln~~-~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g-~~F~~G~Dl~~~~~~-~~~~~~~ 76 (229)
T PRK06213 4 LVSYTL--EDGVATITLDDG-KVNALSPAMIDALNAALDQAE--DDRAVVVITGQP-GIFSGGFDLKVMTSG-AQAAIAL 76 (229)
T ss_pred eEEEEe--cCCEEEEEeCCC-CCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCC-CceEcCcCHHHHhcc-hHhHHHH
Confidence 578888 899999999998 469999999999999999998 457999999999 699999999987532 1111111
Q ss_pred hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC-ceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (269)
Q Consensus 150 ~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~ 228 (269)
.....+++..+.++|||+||+|||+|+|||++|+++||+||++++ ++|++||.++|++|+.++..++++++|...+++
T Consensus 77 -~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~ 155 (229)
T PRK06213 77 -LTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQR 155 (229)
T ss_pred -HHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHH
Confidence 122456778899999999999999999999999999999999999 999999999999988888888999999999999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++++|++++|+||+++||||+|+|++++.+.+.+++++++
T Consensus 156 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 195 (229)
T PRK06213 156 AVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELA 195 (229)
T ss_pred HHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999886
No 76
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=2.4e-42 Score=301.84 Aligned_cols=194 Identities=24% Similarity=0.318 Sum_probs=165.6
Q ss_pred EEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCce-EEEEEcCCCCceeccccccccccCCccch-hh
Q 024304 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVG-VIILTGKGTEAFCSGGDQALRTRDGYADY-EN 148 (269)
Q Consensus 71 v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~-vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~-~~ 148 (269)
++++. +++|++|+||||++ |+||.+|+.+|.++++++++|++++ +||++|.| ++||+|.|++++........ ..
T Consensus 2 ~~~~~--~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g-~~FsaG~Dl~~~~~~~~~~~~~~ 77 (239)
T PLN02267 2 CTLEK--RGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEG-KFFSNGFDLAWAQAAGSAPSRLH 77 (239)
T ss_pred ceeEe--cCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCC-CceeCCcCHHHHhccccCHHHHH
Confidence 46677 89999999999986 9999999999999999999999875 77778887 69999999987642111111 11
Q ss_pred hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEe-CCceEecCCCCcccCCCChHHHHHHhhhCHHHH-
Q 024304 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA- 226 (269)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~-~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a- 226 (269)
.....+.+++..+.++|||+||+|||+|+|||++|+++||+||++ ++++|++||.++|+.++++++.++++++|..++
T Consensus 78 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~ 157 (239)
T PLN02267 78 LMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAAR 157 (239)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHH
Confidence 111234567778999999999999999999999999999999998 568999999999997555568899999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCC-CcHHHHHHHHHHhhc
Q 024304 227 REMWFLARFYTAEEAEKMGLVNTVVPV-SLFVAYLMSLTKCQA 268 (269)
Q Consensus 227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~-e~l~~~a~~la~~la 268 (269)
++|+++|++++|+||+++||||+|+|. +++.+.+.++|++|+
T Consensus 158 ~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia 200 (239)
T PLN02267 158 RDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELA 200 (239)
T ss_pred HHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999985 789999999999886
No 77
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1e-41 Score=338.03 Aligned_cols=197 Identities=25% Similarity=0.297 Sum_probs=175.6
Q ss_pred eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh-
Q 024304 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN- 148 (269)
Q Consensus 70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~- 148 (269)
++.++.. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..........
T Consensus 7 ~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~~~~ 84 (715)
T PRK11730 7 TLQVDWL-EDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAK-DAFIVGADITEFLSLFAAPEEEL 84 (715)
T ss_pred eEEEEEc-CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCC-CccccCcCHHHHhhhccCCHHHH
Confidence 5677632 789999999999999999999999999999999999999999999998 6999999998864321111111
Q ss_pred -hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304 149 -FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (269)
Q Consensus 149 -~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~ 227 (269)
.......+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|+|++|..+|+
T Consensus 85 ~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~ 164 (715)
T PRK11730 85 SQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNAL 164 (715)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHH
Confidence 1111245677789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+|+++|++++|+||+++||||+|+|.+++.+.+.++|++++
T Consensus 165 ~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 205 (715)
T PRK11730 165 EWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAI 205 (715)
T ss_pred HHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998876
No 78
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=3.9e-41 Score=284.73 Aligned_cols=193 Identities=40% Similarity=0.618 Sum_probs=175.3
Q ss_pred EEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch-hhhh
Q 024304 72 IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY-ENFG 150 (269)
Q Consensus 72 ~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~-~~~~ 150 (269)
.+++ +++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||+|.+ +.||+|+|++++........ ....
T Consensus 2 ~~~~--~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~-~~Fs~G~dl~~~~~~~~~~~~~~~~ 78 (195)
T cd06558 2 LVER--DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAG-KAFCAGADLKELAALSDAGEEARAF 78 (195)
T ss_pred EEEE--ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhcccccchhHHHH
Confidence 5666 789999999999999999999999999999999999999999999986 79999999998765433221 1112
Q ss_pred hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHH
Q 024304 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (269)
Q Consensus 151 ~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ 230 (269)
...+..+...+..++||+|++++|.|+|+|++++++||+||++++++|++||.++|++|+++++.+|++++|.+.+++++
T Consensus 79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~ 158 (195)
T cd06558 79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158 (195)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence 23457788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhh
Q 024304 231 FLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQ 267 (269)
Q Consensus 231 ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~l 267 (269)
++|+.++++||+++|||+++++.+++.+++.++++++
T Consensus 159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~~ 195 (195)
T cd06558 159 LTGRRISAEEALELGLVDEVVPDEELLAAALELARRL 195 (195)
T ss_pred HcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999864
No 79
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.3e-40 Score=318.66 Aligned_cols=200 Identities=17% Similarity=0.195 Sum_probs=172.1
Q ss_pred CCCcc--eEEEEEEecCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHhh-cCCCceEEEEEcCCCCc
Q 024304 65 GTEFT--DIIYEKAVGEGIAKITINRPDRR-------------NAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEA 128 (269)
Q Consensus 65 ~~~~~--~v~~~~~~~~gv~~I~lnrp~~~-------------Nal~~~~~~~L~~al~~~~-~d~~~~vvVl~g~g~~~ 128 (269)
...|. ++.+++ +++|++||||||+++ |+||.+|+.+|.+++.+++ +|+++++|||+|.| +.
T Consensus 252 ~~~~~~~~v~~~~--~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G-~~ 328 (546)
T TIGR03222 252 GVRYPTVDVAIDR--AARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQG-DA 328 (546)
T ss_pred CcceeeEEEEEec--cCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCC-CC
Confidence 44444 455565 899999999999999 9999999999999999998 56999999999988 56
Q ss_pred -eeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEE-cCcccccc-hhhhhcccEEEE-------eCCceE
Q 024304 129 -FCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV-AGYAVGGG-HVLHMVCDLTIA-------ADNAIF 198 (269)
Q Consensus 129 -Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v-~G~a~GgG-~~lal~~D~~ia-------~~~a~f 198 (269)
||+|.|+......+........ .....++..|..+|||+||+| ||+|+||| ++|+++||++|+ +++++|
T Consensus 329 ~F~aG~Dl~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f 407 (546)
T TIGR03222 329 ELVLAADALLEAHKDHWFVRETI-GYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAI 407 (546)
T ss_pred ceecCcCccccccccchhHHHHH-HHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEE
Confidence 9999999842211110101111 112446778999999999999 89999999 999999999999 999999
Q ss_pred ecCCCCcccCCCChHHHHHHhhh-CHHHH--HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 199 GQTGPKVGSFDAGYGSSIMSRLV-GPKKA--REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 199 ~~~~~~~Gl~p~~g~~~~l~r~~-G~~~a--~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++||.++|++|+++++++|++++ |..++ ++++++|+.++|+||+++||||+|+|++++++++.+++++|+
T Consensus 408 ~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 480 (546)
T TIGR03222 408 TLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERA 480 (546)
T ss_pred eCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHH
Confidence 99999999999999999999998 99899 559999999999999999999999999999999999999987
No 80
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.3e-40 Score=318.59 Aligned_cols=202 Identities=20% Similarity=0.237 Sum_probs=175.1
Q ss_pred CCCcceEEEEEEecCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHhh-cCCCceEEEEEcCCCCceeccc
Q 024304 65 GTEFTDIIYEKAVGEGIAKITINRPD----------RRNAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEAFCSGG 133 (269)
Q Consensus 65 ~~~~~~v~~~~~~~~gv~~I~lnrp~----------~~Nal~~~~~~~L~~al~~~~-~d~~~~vvVl~g~g~~~Fc~G~ 133 (269)
..+|++|.+++ +++|++|+||||+ ++|+||.+|+.+|.++++.++ +|+++++|||||.++++||+|.
T Consensus 7 ~~~~~~v~~~~--~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~ 84 (546)
T TIGR03222 7 PSQYRHWKLTF--DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGA 84 (546)
T ss_pred CCCCceEEEEe--eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCc
Confidence 45678899998 8999999999976 899999999999999999999 7899999999997657999999
Q ss_pred cccccccCCccchhhhhh---hhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC--ceEecCCCC-ccc
Q 024304 134 DQALRTRDGYADYENFGR---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPK-VGS 207 (269)
Q Consensus 134 Dl~~~~~~~~~~~~~~~~---~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~~~~~-~Gl 207 (269)
|++++............. .....+...+.++|||+||+|||+|+|||++|+++||+||++++ ++|++||++ +|+
T Consensus 85 DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl 164 (546)
T TIGR03222 85 NIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGV 164 (546)
T ss_pred CHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCc
Confidence 999864321111111111 11123445677899999999999999999999999999999986 799999997 999
Q ss_pred CCCChHHHHHH--hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 208 FDAGYGSSIMS--RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 208 ~p~~g~~~~l~--r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+|+++++.+++ +++|..+|++|+++|++++|+||+++||||+|+|++++++++.++|++|+
T Consensus 165 ~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la 227 (546)
T TIGR03222 165 LPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELA 227 (546)
T ss_pred CCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHH
Confidence 99999998887 68999999999999999999999999999999999999999999999986
No 81
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=1.9e-40 Score=328.48 Aligned_cols=196 Identities=27% Similarity=0.318 Sum_probs=174.6
Q ss_pred eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhh
Q 024304 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (269)
Q Consensus 70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~ 149 (269)
.+.++.. +++|++|+||||++.|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++...........
T Consensus 7 ~i~~~~~-~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 84 (714)
T TIGR02437 7 TIQVTAL-EDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGK-DAFIVGADITEFLGLFALPDAEL 84 (714)
T ss_pred eEEEEEc-cCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccCcCHHHHhhcccCCHHHH
Confidence 5677643 789999999999999999999999999999999999999999999998 69999999998753111111111
Q ss_pred --hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304 150 --GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (269)
Q Consensus 150 --~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~ 227 (269)
......+++..|..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 85 ~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~ 164 (714)
T TIGR02437 85 IQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNAL 164 (714)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHH
Confidence 111245677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhh
Q 024304 228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQ 267 (269)
Q Consensus 228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~l 267 (269)
+|+++|++++|+||+++||||+++|.+++.+.+.++++++
T Consensus 165 ~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~ 204 (714)
T TIGR02437 165 EWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDA 204 (714)
T ss_pred HHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999764
No 82
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.6e-40 Score=327.89 Aligned_cols=196 Identities=24% Similarity=0.413 Sum_probs=172.8
Q ss_pred eEEEEEEecCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304 70 DIIYEKAVGEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (269)
Q Consensus 70 ~v~~~~~~~~gv~~I~lnrp-~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~ 148 (269)
++.+++. +++|++|+|||| ++.|+||.+|+.+|.+++++++.|+++++|||+|.++++||+|+|++++..........
T Consensus 6 ~~~~~~~-~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~ 84 (708)
T PRK11154 6 AFTLNVR-EDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAE 84 (708)
T ss_pred eEEEEEc-CCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHH
Confidence 4566663 689999999999 68999999999999999999999999999999997667999999999874321111111
Q ss_pred hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC--ceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (269)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a 226 (269)
........++..+.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|..+|
T Consensus 85 ~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A 164 (708)
T PRK11154 85 ALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTA 164 (708)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHH
Confidence 11112355778899999999999999999999999999999999987 4899999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHh
Q 024304 227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKC 266 (269)
Q Consensus 227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~ 266 (269)
++|+++|++++|+||+++||||+++|.+++.+.+.++|++
T Consensus 165 ~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~ 204 (708)
T PRK11154 165 LDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKK 204 (708)
T ss_pred HHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987
No 83
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.8e-40 Score=318.41 Aligned_cols=203 Identities=17% Similarity=0.169 Sum_probs=172.8
Q ss_pred CCCcceEEEEEEecCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHhhc-CCCceEEEEEcCCCCcee
Q 024304 65 GTEFTDIIYEKAVGEGIAKITINRPDRR-------------NAFRPHTVKELIRAFNDARD-DSSVGVIILTGKGTEAFC 130 (269)
Q Consensus 65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~-------------Nal~~~~~~~L~~al~~~~~-d~~~~vvVl~g~g~~~Fc 130 (269)
.-.|.+|.++...+++|++||||||+++ |+||.+|+.+|.+++++++. |+++++|||||.|+++||
T Consensus 256 ~~~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~ 335 (550)
T PRK08184 256 GLRYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAV 335 (550)
T ss_pred ceeeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEE
Confidence 3456556655533689999999999988 68999999999999999986 799999999998844999
Q ss_pred ccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc-Ccccccc-hhhhhcccEEEEe-------CCceEecC
Q 024304 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA-GYAVGGG-HVLHMVCDLTIAA-------DNAIFGQT 201 (269)
Q Consensus 131 ~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~-G~a~GgG-~~lal~~D~~ia~-------~~a~f~~~ 201 (269)
+|+|++............. ......++..|..+|||+||+|| |+|+||| ++|+++||+||++ ++++|++|
T Consensus 336 aG~Dl~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~p 414 (550)
T PRK08184 336 LAADATLLAHKDHWLVRET-RGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLS 414 (550)
T ss_pred eCCChhhhcccchHHHHHH-HHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECc
Confidence 9999874321110000111 11234567789999999999997 9999999 9999999999999 99999999
Q ss_pred CCCcccCCCChHHHHHHhh-hCHHHHHHH--HHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 202 GPKVGSFDAGYGSSIMSRL-VGPKKAREM--WFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 202 ~~~~Gl~p~~g~~~~l~r~-~G~~~a~~l--~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|.++|++|++|++++|+++ +|..+++++ +++|++++|+||+++||||+|+|++++++++.+++++++
T Consensus 415 e~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia 484 (550)
T PRK08184 415 ALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERA 484 (550)
T ss_pred cccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHH
Confidence 9999999999999999998 699999997 589999999999999999999999999999999999986
No 84
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=6.8e-40 Score=325.27 Aligned_cols=201 Identities=21% Similarity=0.345 Sum_probs=173.0
Q ss_pred CCCcceEEEEEEecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEE-EEEcCCCCceeccccccccccCC
Q 024304 65 GTEFTDIIYEKAVGEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVI-ILTGKGTEAFCSGGDQALRTRDG 142 (269)
Q Consensus 65 ~~~~~~v~~~~~~~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vv-Vl~g~g~~~Fc~G~Dl~~~~~~~ 142 (269)
...+.++.++. +++|++|+||||+ +.|+||.+|+.+|.+++++++.|+++++| |++|.| ++||+|+|++++....
T Consensus 9 ~~~~~~~~~~~--~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g-~~F~aG~Dl~~~~~~~ 85 (737)
T TIGR02441 9 LMARTHRHYEV--KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP-GSFVAGADIQMIAACK 85 (737)
T ss_pred CCCCCeEEEEE--ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCC-CcceeCcCHHHHhccC
Confidence 34456788988 8999999999998 58999999999999999999999999965 569988 6999999999875321
Q ss_pred ccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC--ceEecCCCCcccCCCChHHHHHHhh
Q 024304 143 YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRL 220 (269)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~~~~~~Gl~p~~g~~~~l~r~ 220 (269)
.............+++..+.++|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|+
T Consensus 86 ~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprl 165 (737)
T TIGR02441 86 TAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKL 165 (737)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHh
Confidence 11111111123456788999999999999999999999999999999999988 5899999999999999999999999
Q ss_pred hCHHHHHHHHHcCCCCCHHHHHHcCccceecCC-------------CcHHHHHHHHHHhhc
Q 024304 221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPV-------------SLFVAYLMSLTKCQA 268 (269)
Q Consensus 221 ~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~-------------e~l~~~a~~la~~la 268 (269)
+|..+|++|+++|++++|+||+++||||+|+|+ +++.+.+.++++.++
T Consensus 166 iG~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~ 226 (737)
T TIGR02441 166 TGVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLA 226 (737)
T ss_pred hCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999987 457777777776653
No 85
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=4.6e-41 Score=281.33 Aligned_cols=191 Identities=29% Similarity=0.424 Sum_probs=170.6
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc--hhhhh-----
Q 024304 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD--YENFG----- 150 (269)
Q Consensus 78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~--~~~~~----- 150 (269)
+..|+++.||||.|+|+||..|+.|+.++++.+.+||+|++|||+|+| |.||+|+|++.+....... .++..
T Consensus 29 ~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~G-KhFcaGIDl~~~~~~~~~~~~~dd~aR~g~~ 107 (292)
T KOG1681|consen 29 QPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAG-KHFCAGIDLNDMASDRILQPEGDDVARKGRS 107 (292)
T ss_pred CCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCC-cceecccCcchhhhhhccccccchHhhhhHH
Confidence 778999999999999999999999999999999999999999999999 8999999988764321111 11111
Q ss_pred -hh---hHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhC-HHH
Q 024304 151 -RL---NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG-PKK 225 (269)
Q Consensus 151 -~~---~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G-~~~ 225 (269)
+. ..++-+..|.+||||+|++|+|+|+|+|+.|..+||+|+|+++|.|..-|+.+|+..+.|...+||..+| .+.
T Consensus 108 lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s~ 187 (292)
T KOG1681|consen 108 LRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSL 187 (292)
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchHH
Confidence 11 2455667889999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCC-CcHHHHHHHHHHhhcC
Q 024304 226 AREMWFLARFYTAEEAEKMGLVNTVVPV-SLFVAYLMSLTKCQAH 269 (269)
Q Consensus 226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~-e~l~~~a~~la~~la~ 269 (269)
++++.+|++.++|.||++.|||.+|+|+ +++.+.+..+|+.||.
T Consensus 188 ~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~ 232 (292)
T KOG1681|consen 188 ARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIAS 232 (292)
T ss_pred HHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhcc
Confidence 9999999999999999999999999986 7899999999998873
No 86
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.2e-39 Score=312.88 Aligned_cols=201 Identities=21% Similarity=0.236 Sum_probs=173.9
Q ss_pred CCcceEEEEEEecCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHhh-cCCCceEEEEEcCCCCceecccc
Q 024304 66 TEFTDIIYEKAVGEGIAKITINRP-------D---RRNAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEAFCSGGD 134 (269)
Q Consensus 66 ~~~~~v~~~~~~~~gv~~I~lnrp-------~---~~Nal~~~~~~~L~~al~~~~-~d~~~~vvVl~g~g~~~Fc~G~D 134 (269)
..|+++.++. +++|++|+|||| + ++|+||.+|+.+|.++++.++ +|+++++|||+|.++++||+|+|
T Consensus 12 ~~~~~~~~e~--~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~D 89 (550)
T PRK08184 12 SQYRHWKLSF--DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGAN 89 (550)
T ss_pred CCCceEEEEe--eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccC
Confidence 4578899998 899999999965 4 899999999999999999999 78999999999987689999999
Q ss_pred ccccccCCccchhhhhh---hhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC--ceEecCCCC-cccC
Q 024304 135 QALRTRDGYADYENFGR---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPK-VGSF 208 (269)
Q Consensus 135 l~~~~~~~~~~~~~~~~---~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~~~~~-~Gl~ 208 (269)
++.+............. .....+...+.++|||+||+|||+|+|||++|+++|||||++++ ++|++||.+ +|++
T Consensus 90 L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~ 169 (550)
T PRK08184 90 IFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL 169 (550)
T ss_pred HHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence 99864321111111111 11122445677899999999999999999999999999999987 899999997 9999
Q ss_pred CCChHHHHHH--hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 209 DAGYGSSIMS--RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 209 p~~g~~~~l~--r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|+++++.+++ +++|..++++|+++|+.++|+||+++||||+|+|++++.+++.++|++|+
T Consensus 170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia 231 (550)
T PRK08184 170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELA 231 (550)
T ss_pred CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHH
Confidence 9999999998 78999999999999999999999999999999999999999999999886
No 87
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=1.5e-39 Score=321.93 Aligned_cols=187 Identities=25% Similarity=0.449 Sum_probs=166.5
Q ss_pred cCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEE-EcCCCCceeccccccccccCCccchhhhhhhhHH
Q 024304 78 GEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL 155 (269)
Q Consensus 78 ~~gv~~I~lnrp-~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl-~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~ 155 (269)
+++|++|+|||| ++.|+||.+|+.+|.+++++++.|+++++||| +|.| ++||+|+|++++.................
T Consensus 8 ~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 86 (699)
T TIGR02440 8 EDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKP-DNFIAGADISMLAACQTAGEAKALAQQGQ 86 (699)
T ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CceeeccCchhhhccCChhHHHHHHHHHH
Confidence 789999999999 69999999999999999999999999999987 5666 69999999998743211111111111245
Q ss_pred HHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC--ceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcC
Q 024304 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233 (269)
Q Consensus 156 ~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg 233 (269)
.++..+..+|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|..++++|+++|
T Consensus 87 ~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG 166 (699)
T TIGR02440 87 VLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTG 166 (699)
T ss_pred HHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcC
Confidence 6777899999999999999999999999999999999986 79999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCccceecCCCcHHHHHHHHHH
Q 024304 234 RFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTK 265 (269)
Q Consensus 234 ~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~ 265 (269)
+.++|+||+++||||+++|++++.+++.++|+
T Consensus 167 ~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~ 198 (699)
T TIGR02440 167 KQLRAKQALKLGLVDDVVPQSILLDTAVEMAL 198 (699)
T ss_pred CcCCHHHHHhCCCCcEecChhHHHHHHHHHHH
Confidence 99999999999999999999999999999997
No 88
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=276.76 Aligned_cols=198 Identities=31% Similarity=0.499 Sum_probs=175.4
Q ss_pred ceEEEEEE--ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304 69 TDIIYEKA--VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (269)
Q Consensus 69 ~~v~~~~~--~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~ 146 (269)
.+|.+++- -+.||.+|-+|||.++|+|+..|+++|.++++.+..|+.+++|+|++.-+..||+|.|+++.........
T Consensus 27 ~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev 106 (291)
T KOG1679|consen 27 NEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEV 106 (291)
T ss_pred ceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHH
Confidence 44555442 1779999999999999999999999999999999999999999999988899999999999765543222
Q ss_pred hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (269)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a 226 (269)
..+ -..+..++..|.++|.|+||+++|.+.|||++|+++||+|+|+.+++|+++|.+++++|++||+++|+|.+|...+
T Consensus 107 ~~f-V~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~ala 185 (291)
T KOG1679|consen 107 TRF-VNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALA 185 (291)
T ss_pred HHH-HHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHH
Confidence 222 2236678889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCC----CcHHHHHHHHHHhh
Q 024304 227 REMWFLARFYTAEEAEKMGLVNTVVPV----SLFVAYLMSLTKCQ 267 (269)
Q Consensus 227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~----e~l~~~a~~la~~l 267 (269)
+||++|++.+++.||..+|||||+|.. |...+.+.++|+++
T Consensus 186 KELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~ei 230 (291)
T KOG1679|consen 186 KELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREI 230 (291)
T ss_pred HhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHh
Confidence 999999999999999999999999975 46777788888765
No 89
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=2e-37 Score=264.63 Aligned_cols=201 Identities=29% Similarity=0.441 Sum_probs=179.2
Q ss_pred CCCcceEEEEEEecCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc
Q 024304 65 GTEFTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143 (269)
Q Consensus 65 ~~~~~~v~~~~~~~~gv~~I~ln-rp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~ 143 (269)
...+.++.+++ ++|+.+|.+| ||+++|+++.+++.++.++|+.+.+|+++..++++|.| ++||+|.|+........
T Consensus 3 ~~~~~~~vv~~--~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G-~~f~sG~Df~~~~~~~~ 79 (266)
T KOG0016|consen 3 AMRYREIVVTR--ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNG-SYFCSGLDFSPFAKALD 79 (266)
T ss_pred cccccceEEEe--cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCc-cEEeeccccchhhhcCC
Confidence 34677889999 9999999999 99999999999999999999999999999999999999 59999999988654322
Q ss_pred cchhhh---h---hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHH
Q 024304 144 ADYENF---G---RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIM 217 (269)
Q Consensus 144 ~~~~~~---~---~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l 217 (269)
.+..+. . -..+..+...+..+|||+||+|||+|+|.|+.+...||+++|+|+++|..|+.++|..|+++.++.+
T Consensus 80 ~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~ 159 (266)
T KOG0016|consen 80 DDANEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTL 159 (266)
T ss_pred CcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeee
Confidence 221111 1 1123346778899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 218 SRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 218 ~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
|+++|...|.||++.|++++|+||.+.|||++++|.+.+.+.+..-+++++
T Consensus 160 p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s 210 (266)
T KOG0016|consen 160 PKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYS 210 (266)
T ss_pred hHhhchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988887765
No 90
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=9.9e-37 Score=270.26 Aligned_cols=194 Identities=24% Similarity=0.310 Sum_probs=174.1
Q ss_pred ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh-
Q 024304 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE- 147 (269)
Q Consensus 69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~- 147 (269)
..|.++. .+....||||||+.+||+|.+|+..+...|..++.++.+++||+.|.++|+||+|+|+....+.......
T Consensus 38 ~~VL~e~--~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~ 115 (401)
T KOG1684|consen 38 DQVLVEG--KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETP 115 (401)
T ss_pred CceEEec--CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCch
Confidence 5789998 9999999999999999999999999999999999999999999999999999999998865443322221
Q ss_pred --hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304 148 --NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (269)
Q Consensus 148 --~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~ 225 (269)
......-+.+...|..+.||.||.++|.+||||++|+++.-||||+|++.|++||..+|++|+.|++++++|+.| ..
T Consensus 116 ~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~l 194 (401)
T KOG1684|consen 116 EVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YL 194 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HH
Confidence 111222456778999999999999999999999999999999999999999999999999999999999999999 59
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHH
Q 024304 226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTK 265 (269)
Q Consensus 226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~ 265 (269)
+.+|.|||+++++.||+..||.+|.||+++|...-++|.+
T Consensus 195 g~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~ 234 (401)
T KOG1684|consen 195 GLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLK 234 (401)
T ss_pred HHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhh
Confidence 9999999999999999999999999999998887777763
No 91
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-33 Score=232.35 Aligned_cols=195 Identities=29% Similarity=0.383 Sum_probs=171.4
Q ss_pred eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhh
Q 024304 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (269)
Q Consensus 70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~ 149 (269)
..+++. +++|..|+||+|+|+|.++.+|+.+|.+++....+..++|+|||+..| +.||+|.|++++......+...-
T Consensus 33 ~g~~~~--~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~G-kifSaGH~LKELt~e~g~d~hae 109 (287)
T KOG1682|consen 33 LGLVKE--HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQG-KIFSAGHNLKELTNEPGSDIHAE 109 (287)
T ss_pred cccccc--ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCC-ccccccccHHHhhcCccchHHHH
Confidence 344555 799999999999999999999999999999999999999999999999 69999999999875432222211
Q ss_pred hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHH
Q 024304 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREM 229 (269)
Q Consensus 150 ~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l 229 (269)
......+++.-|+++|.|+|+.|||++..+|+.|...||+++|++++.|..|..++|+|....| .-+.|.+..+.+.+|
T Consensus 110 vFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPG-vAlaRavpRkva~~M 188 (287)
T KOG1682|consen 110 VFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPG-VALARAVPRKVAAYM 188 (287)
T ss_pred HHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcc-hhHhhhcchhHHHHH
Confidence 2233567888999999999999999999999999999999999999999999999999765543 357888899999999
Q ss_pred HHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 230 WFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 230 ~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
++||.+++++||+..|||++|||.++|+.++++++..|-
T Consensus 189 L~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~ 227 (287)
T KOG1682|consen 189 LMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIK 227 (287)
T ss_pred HHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988764
No 92
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.85 E-value=4.6e-21 Score=160.26 Aligned_cols=144 Identities=20% Similarity=0.217 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccc
Q 024304 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (269)
Q Consensus 98 ~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~ 177 (269)
-.+.+|.++++++++|+++++|||++ ||.|+|+.... .+.++...+.+++||+||+++|.|.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~~-------------~~~~~i~~~~~~~kpVia~v~G~a~ 83 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTASE-------------VIRAELAAARAAGKPVVASGGGNAA 83 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHHH-------------HHHHHHHHHHhCCCCEEEEECCchh
Confidence 45789999999999999999999986 57888766421 1344566788899999999999999
Q ss_pred ccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHH--------HHHhhhC--HHHHHHHHHcCCCCCHHHHHHcCcc
Q 024304 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS--------IMSRLVG--PKKAREMWFLARFYTAEEAEKMGLV 247 (269)
Q Consensus 178 GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~--------~l~r~~G--~~~a~~l~ltg~~i~a~eA~~~GLv 247 (269)
|+|+.|+++||++++++++.|+.++...+..+...... .+++..| ....++++..|..++|+||++.|||
T Consensus 84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLV 163 (177)
T cd07014 84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLV 163 (177)
T ss_pred HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCc
Confidence 99999999999999999999999877655322111111 3444455 7788899999999999999999999
Q ss_pred ceecCCCcHHHH
Q 024304 248 NTVVPVSLFVAY 259 (269)
Q Consensus 248 ~~vv~~e~l~~~ 259 (269)
|++.+.+++.+.
T Consensus 164 D~v~~~~e~~~~ 175 (177)
T cd07014 164 DSLGSFDDAVAK 175 (177)
T ss_pred ccCCCHHHHHHH
Confidence 999998887664
No 93
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.84 E-value=2.5e-20 Score=157.20 Aligned_cols=152 Identities=22% Similarity=0.248 Sum_probs=120.5
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHH
Q 024304 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI 161 (269)
Q Consensus 82 ~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i 161 (269)
++|.|+ +.++..+...+.++|+.+++++ ++.|+|.=..+ |+++.. ...++..|
T Consensus 2 ~vv~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSp-----GG~v~~----------------~~~i~~~l 54 (187)
T cd07020 2 YVLEIN-----GAITPATADYLERAIDQAEEGG-ADALIIELDTP-----GGLLDS----------------TREIVQAI 54 (187)
T ss_pred EEEEEe-----eEEChHHHHHHHHHHHHHHhCC-CCEEEEEEECC-----CCCHHH----------------HHHHHHHH
Confidence 566665 3367778889999999998765 78787763332 444332 22445677
Q ss_pred hcCCCcEEEEEc---CcccccchhhhhcccEEEEeCCceEecCCCCcccCCCC--------------hHHHHHHhhhCH-
Q 024304 162 RRLPKPVIAMVA---GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG--------------YGSSIMSRLVGP- 223 (269)
Q Consensus 162 ~~~~kP~Ia~v~---G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~--------------g~~~~l~r~~G~- 223 (269)
..+|||+|++|+ |.|.|||+.|+++||++|++++++|+++++..+..+.. .....+++..|.
T Consensus 55 ~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~ 134 (187)
T cd07020 55 LASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRN 134 (187)
T ss_pred HhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 889999999999 99999999999999999999999999999885544432 234467888887
Q ss_pred -HHHHHHHHcCCCCCHHHHHHcCccceecCCC-cHHHHH
Q 024304 224 -KKAREMWFLARFYTAEEAEKMGLVNTVVPVS-LFVAYL 260 (269)
Q Consensus 224 -~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e-~l~~~a 260 (269)
..+++++++|+.++++||+++||||++++++ ++.+.+
T Consensus 135 ~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~~ 173 (187)
T cd07020 135 AEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKKL 173 (187)
T ss_pred HHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHHc
Confidence 6899999999999999999999999999886 676543
No 94
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.69 E-value=1.7e-16 Score=136.22 Aligned_cols=161 Identities=20% Similarity=0.232 Sum_probs=113.3
Q ss_pred CEEEEEEcCC--CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHH
Q 024304 80 GIAKITINRP--DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (269)
Q Consensus 80 gv~~I~lnrp--~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (269)
+|++|.++-+ ++.+.....++.+|.++|+.+.+||++++|||+ .||.|+|+..+. .+.+.
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~~-------------~~~~~ 62 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTASE-------------VIRAE 62 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHHH-------------HHHHH
Confidence 3555555533 122333455689999999999999999999997 789999987642 13344
Q ss_pred HHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCC------------CCcccCC---CChH---------
Q 024304 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTG------------PKVGSFD---AGYG--------- 213 (269)
Q Consensus 158 ~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~------------~~~Gl~p---~~g~--------- 213 (269)
+..+..++||+|++++|.|.|+|+.|+++||++++++++.|+... .++|+-+ -.++
T Consensus 63 l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~ 142 (211)
T cd07019 63 LAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 142 (211)
T ss_pred HHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCC
Confidence 567788999999999999999999999999999999999987543 2233211 0100
Q ss_pred -----HHHHHhhh-----------------CHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHH
Q 024304 214 -----SSIMSRLV-----------------GPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAY 259 (269)
Q Consensus 214 -----~~~l~r~~-----------------G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~ 259 (269)
-..+.+.+ .+. ..+-+..|+.+++++|++.||||++...+++.+.
T Consensus 143 ~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~-~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~~ 209 (211)
T cd07019 143 LPPEAQLGLQLSIENGYKRFITLVADARHSTPE-QIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAK 209 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH-HHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHHH
Confidence 01111111 121 2222456889999999999999999887766543
No 95
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.63 E-value=4.3e-15 Score=127.83 Aligned_cols=152 Identities=22% Similarity=0.181 Sum_probs=104.2
Q ss_pred cCCCCCCC-CCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCC
Q 024304 87 NRPDRRNA-FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLP 165 (269)
Q Consensus 87 nrp~~~Na-l~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 165 (269)
+++...|+ ++..++.+|.++|+.+++|+++++|||+. +|.|+++.... .+.+.+..+.. +
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~-----~s~gg~~~~~~-------------~l~~~l~~~~~-~ 73 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI-----DSPGGEVAGVF-------------ELADAIRAARA-G 73 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE-----eCCCCcHHHHH-------------HHHHHHHHHhc-C
Confidence 34555554 45789999999999999999999999975 44565544311 12233334444 6
Q ss_pred CcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCC------------cccCCCC-----h---------HH----H
Q 024304 166 KPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK------------VGSFDAG-----Y---------GS----S 215 (269)
Q Consensus 166 kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~------------~Gl~p~~-----g---------~~----~ 215 (269)
|||||+++|.|.|+|+.|+++||++++++++.|+..... +|+-+.. + .+ .
T Consensus 74 KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re 153 (214)
T cd07022 74 KPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARA 153 (214)
T ss_pred CCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHH
Confidence 999999999999999999999999999999998765422 2221000 0 00 0
Q ss_pred HHH-----------------hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHH
Q 024304 216 IMS-----------------RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAY 259 (269)
Q Consensus 216 ~l~-----------------r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~ 259 (269)
.+. |.+.....++++ |+.+++++|++.||||++...+++...
T Consensus 154 ~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~~~ 212 (214)
T cd07022 154 RLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDALAA 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHHHH
Confidence 011 111233334444 999999999999999999887776543
No 96
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.60 E-value=6.5e-15 Score=120.97 Aligned_cols=135 Identities=25% Similarity=0.279 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcC
Q 024304 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (269)
Q Consensus 95 l~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G 174 (269)
++..++.+|.+.|+.++.|+++++|+|.. .|.|+|+.. ...+...+..++||+|+.++|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~-----~s~Gg~~~~----------------~~~i~~~l~~~~kpvva~~~g 66 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV-----NTPGGRVDA----------------GMNIVDALQASRKPVIAYVGG 66 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE-----ECCCcCHHH----------------HHHHHHHHHHhCCCEEEEECC
Confidence 56688999999999999999999999975 356666543 234556777888999999999
Q ss_pred cccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHH-------------HHHHhh------hCHHHHHHHHHcCCC
Q 024304 175 YAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGS-------------SIMSRL------VGPKKAREMWFLARF 235 (269)
Q Consensus 175 ~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~-------------~~l~r~------~G~~~a~~l~ltg~~ 235 (269)
.|.++|+.|+++||.+++.+++.|+..++..+........ ..+... +......+++..+..
T Consensus 67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~ 146 (161)
T cd00394 67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV 146 (161)
T ss_pred hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence 9999999999999999999999999988776543322000 011111 233446777888999
Q ss_pred CCHHHHHHcCcccee
Q 024304 236 YTAEEAEKMGLVNTV 250 (269)
Q Consensus 236 i~a~eA~~~GLv~~v 250 (269)
++++||++.||||+|
T Consensus 147 ~~a~eA~~~GLvD~i 161 (161)
T cd00394 147 LTAQEALEYGLVDAL 161 (161)
T ss_pred EcHHHHHHcCCcCcC
Confidence 999999999999975
No 97
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.60 E-value=3e-15 Score=145.93 Aligned_cols=169 Identities=20% Similarity=0.240 Sum_probs=122.7
Q ss_pred cCCEEEEEEcCCCC--CCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHH
Q 024304 78 GEGIAKITINRPDR--RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL 155 (269)
Q Consensus 78 ~~gv~~I~lnrp~~--~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~ 155 (269)
++.|++|+++.+=. .+..+....+.+.+.++++.+|+++|+|||+-..+ |++.... ..+.
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSp-----GGs~~as-------------e~i~ 368 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSP-----GGSVFAS-------------EIIR 368 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCC-----CCCHHHH-------------HHHH
Confidence 78899999997632 34444445567888899999999999999996543 2221110 0122
Q ss_pred HHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceE------ecCC------CCcccCCCChHHHHHH-----
Q 024304 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF------GQTG------PKVGSFDAGYGSSIMS----- 218 (269)
Q Consensus 156 ~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f------~~~~------~~~Gl~p~~g~~~~l~----- 218 (269)
+....+...+||||+.++|.|.+||+.++++||.++|++.+.+ +.++ .++|+.++...+..+.
T Consensus 369 ~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~ 448 (584)
T TIGR00705 369 RELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLL 448 (584)
T ss_pred HHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCC
Confidence 3344566788999999999999999999999999999999987 4443 4677776554443332
Q ss_pred -----------------------hhhCHHH-----HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHH
Q 024304 219 -----------------------RLVGPKK-----AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLT 264 (269)
Q Consensus 219 -----------------------r~~G~~~-----a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la 264 (269)
.+++..+ ..+.+.+|+.++|+||+++||||++...++..+.+.+++
T Consensus 449 ~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~~~~Ai~~a~~la 522 (584)
T TIGR00705 449 RPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGGLDEAVAKAAKLA 522 (584)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCCHHHHHHHHHHHc
Confidence 2555555 678889999999999999999999965555444444444
No 98
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.55 E-value=3.4e-14 Score=121.69 Aligned_cols=158 Identities=25% Similarity=0.326 Sum_probs=109.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHH
Q 024304 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (269)
Q Consensus 81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (269)
|++|.++-+=... ...++.+|.++|+.+.+|+++++|||++ +|.|+|+.... .+.+.+..
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~-----~s~Gg~~~~~~-------------~i~~~i~~ 61 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI-----NSPGGSVVASE-------------EIYREIRR 61 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE-----ECCCCCHHHHH-------------HHHHHHHH
Confidence 5566665431101 3689999999999999999999999987 36788876521 13345667
Q ss_pred HhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCC------------cccCCCCh----------------
Q 024304 161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK------------VGSFDAGY---------------- 212 (269)
Q Consensus 161 i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~------------~Gl~p~~g---------------- 212 (269)
+..++||+||+++|.|.|+|+.|+++||.+++++++.|+..... +|+-+...
T Consensus 62 ~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s 141 (208)
T cd07023 62 LRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLT 141 (208)
T ss_pred HHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCC
Confidence 78889999999999999999999999999999999998754311 22211100
Q ss_pred --HHHHHHhhh---------------C--HHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHH
Q 024304 213 --GSSIMSRLV---------------G--PKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAY 259 (269)
Q Consensus 213 --~~~~l~r~~---------------G--~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~ 259 (269)
....+...+ | .... +-++.|..+++++|++.||||.+...++..++
T Consensus 142 ~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~~~ 206 (208)
T cd07023 142 EEERAILQALVDDIYDQFVDVVAEGRGMSGERL-DKLADGRVWTGRQALELGLVDELGGLDDAIAK 206 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHhcCCcEEEHHHHHHcCCCcccCCHHHHHHh
Confidence 001111111 1 1122 22567889999999999999999876665543
No 99
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.54 E-value=7.2e-14 Score=114.79 Aligned_cols=129 Identities=21% Similarity=0.294 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccc
Q 024304 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (269)
Q Consensus 98 ~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~ 177 (269)
.+...+.+.|+.+..+..+ .+.|.+.|+ ++.. ...+...|..++||+|+.++|.|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG-------~~~~----------------~~~i~~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGG-------DVFA----------------GLAIYNALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCC-------CHHH----------------HHHHHHHHHhcCCCEEEEEcchHH
Confidence 5677888889988877433 344454443 2211 234567788899999999999999
Q ss_pred ccchhhhhcccEEEEeCCceEecCCCCcccCCCChH---------------HHHHHhhhC--HHHHHHHHHcCCCCCHHH
Q 024304 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG---------------SSIMSRLVG--PKKAREMWFLARFYTAEE 240 (269)
Q Consensus 178 GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~---------------~~~l~r~~G--~~~a~~l~ltg~~i~a~e 240 (269)
|+|+.|+++||+|++++++.|+++....+..+.... ...+.+..| ....++++..+..++++|
T Consensus 71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e 150 (160)
T cd07016 71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE 150 (160)
T ss_pred hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence 999999999999999999999998776665443221 223677788 667778888888999999
Q ss_pred HHHcCcccee
Q 024304 241 AEKMGLVNTV 250 (269)
Q Consensus 241 A~~~GLv~~v 250 (269)
|+++||||+|
T Consensus 151 A~~~GliD~v 160 (160)
T cd07016 151 AVELGFADEI 160 (160)
T ss_pred HHHcCCCCcC
Confidence 9999999985
No 100
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.54 E-value=1e-13 Score=118.68 Aligned_cols=155 Identities=22% Similarity=0.346 Sum_probs=108.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHH
Q 024304 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (269)
Q Consensus 81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (269)
|++|+++.+ ++ ....+|.++|+.+.+|+++++|||++. |.|+++.. ...+...
T Consensus 2 v~vi~i~g~-----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~----------------~~~l~~~ 54 (207)
T TIGR00706 2 IAILPVSGA-----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVA----------------SEEIYEK 54 (207)
T ss_pred EEEEEEEEE-----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHH----------------HHHHHHH
Confidence 566666543 21 335789999999999999999999974 45666543 2334556
Q ss_pred HhcCC--CcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCc------------ccCC------------CCh--
Q 024304 161 IRRLP--KPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV------------GSFD------------AGY-- 212 (269)
Q Consensus 161 i~~~~--kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~------------Gl~p------------~~g-- 212 (269)
|..++ ||+|+.++|.|.|+|+.|+++||.+++++++.++...+.. |+-+ ...
T Consensus 55 i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~ 134 (207)
T TIGR00706 55 LKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRE 134 (207)
T ss_pred HHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCC
Confidence 66666 9999999999999999999999999999999887644322 2210 000
Q ss_pred ----HHHHHH-----------------hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHH
Q 024304 213 ----GSSIMS-----------------RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSL 263 (269)
Q Consensus 213 ----~~~~l~-----------------r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~l 263 (269)
.-..+. |-+.....++ ++.++.+++++|++.||||.+...+++.+.+.++
T Consensus 135 ~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~~ 205 (207)
T TIGR00706 135 LTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTEDDALKWLAEL 205 (207)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHHh
Confidence 000111 1222322333 4678999999999999999999988888776654
No 101
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.42 E-value=1.5e-12 Score=112.74 Aligned_cols=146 Identities=21% Similarity=0.150 Sum_probs=105.7
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcC
Q 024304 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (269)
Q Consensus 95 l~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G 174 (269)
-+..++.+|.++|+++.+|+++++|||+..++ .| ++.+++++ .+....+...+|||||.++|
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~-gg-~~~~~~el----------------~~~i~~~~~~~kpVia~~~~ 87 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGL-SG-GLAKLEEL----------------RQALERFRASGKPVIAYADG 87 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECCCC-CC-CHHHHHHH----------------HHHHHHHHHhCCeEEEEeCC
Confidence 45678899999999999999999999999885 45 55555442 34455666689999999998
Q ss_pred cccccchhhhhcccEEEEeCCceEecCCCCc------------ccCC---------CChHHH-----------HHH----
Q 024304 175 YAVGGGHVLHMVCDLTIAADNAIFGQTGPKV------------GSFD---------AGYGSS-----------IMS---- 218 (269)
Q Consensus 175 ~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~------------Gl~p---------~~g~~~-----------~l~---- 218 (269)
|.+||+.|+++||.+++.+.+.|+...+.. |+-+ ..+..+ .+.
T Consensus 88 -~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~ 166 (222)
T cd07018 88 -YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLD 166 (222)
T ss_pred -CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHH
Confidence 889999999999999999999999864332 1111 000000 000
Q ss_pred -------------hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHH
Q 024304 219 -------------RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYL 260 (269)
Q Consensus 219 -------------r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a 260 (269)
|.+.....++ +..|+.+++++|++.||||++...+++.+.+
T Consensus 167 ~~~~~f~~~Va~~R~~~~~~~~~-~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~l 220 (222)
T cd07018 167 SLWDQYLADVAASRGLSPDALEA-LIDLGGDSAEEALEAGLVDGLAYRDELEARL 220 (222)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHH-HHHcCCcHHHHHHHCCCCCcCCcHHHHHHHH
Confidence 1112222233 3459999999999999999999888887664
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.38 E-value=9.8e-12 Score=103.90 Aligned_cols=145 Identities=24% Similarity=0.296 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHH
Q 024304 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI 161 (269)
Q Consensus 82 ~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i 161 (269)
.+|.++ ..+++.+...+.++|+++++++ ++.|||.=..+ |+++.. ...+...|
T Consensus 2 ~vi~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~ivl~insp-----GG~v~~----------------~~~I~~~l 54 (178)
T cd07021 2 YVIPIE-----GEIDPGLAAFVERALKEAKEEG-ADAVVLDIDTP-----GGRVDS----------------ALEIVDLI 54 (178)
T ss_pred EEEEEe-----eEECHHHHHHHHHHHHHHHhCC-CCeEEEEEECc-----CCCHHH----------------HHHHHHHH
Confidence 455564 3477788889999999999887 67777755443 433332 34567788
Q ss_pred hcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChH--------HHH------HHhhhC--HHH
Q 024304 162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG--------SSI------MSRLVG--PKK 225 (269)
Q Consensus 162 ~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~--------~~~------l~r~~G--~~~ 225 (269)
.++++|+|+.|+|.|.++|+.|+++||++++++++.|+.+++-.+ .++ ... +...-| ...
T Consensus 55 ~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~~----~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~ 130 (178)
T cd07021 55 LNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPIPG----DGNGAADEKVQSYWRAKMRAAAEKKGRDPDI 130 (178)
T ss_pred HhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeEcC----CCccchhHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 899999999999999999999999999999999999998754422 222 011 222223 445
Q ss_pred HHHHHHcC-------------CCCCHHHHHHcCccceecCC-CcHH
Q 024304 226 AREMWFLA-------------RFYTAEEAEKMGLVNTVVPV-SLFV 257 (269)
Q Consensus 226 a~~l~ltg-------------~~i~a~eA~~~GLv~~vv~~-e~l~ 257 (269)
+..|+... ..++++||++.|++|.+.+. ++|.
T Consensus 131 a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll 176 (178)
T cd07021 131 AEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL 176 (178)
T ss_pred HHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence 55555544 37999999999999999864 4443
No 103
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.07 E-value=5e-09 Score=86.96 Aligned_cols=138 Identities=22% Similarity=0.222 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (269)
Q Consensus 94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~ 173 (269)
.+++.+...|.++++.++++ +.+.|+|.=..| |+++.. ...+...|...++||++.+.
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~inSP-----GG~v~~----------------~~~I~~~i~~~~~pvv~~v~ 66 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQD-NAEAIIIELDTP-----GGRADA----------------AGNIVQRIQQSKIPVIIYVY 66 (172)
T ss_pred EECHhHHHHHHHHHHHHhcC-CCCeEEEEEECC-----CCCHHH----------------HHHHHHHHHhcCcCEEEEEe
Confidence 47788888999999999876 468887765443 443332 23456677788999999999
Q ss_pred ---CcccccchhhhhcccEEEEeCCceEecCCCCcccCCC----ChH----HH------HHHhhhC--HHHHHHHHHcCC
Q 024304 174 ---GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDA----GYG----SS------IMSRLVG--PKKAREMWFLAR 234 (269)
Q Consensus 174 ---G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~----~g~----~~------~l~r~~G--~~~a~~l~ltg~ 234 (269)
|.|.++|..++++||.+++.+++.++...+..|.-+. ..- .. -+.+.-| ...+..++....
T Consensus 67 p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~ 146 (172)
T cd07015 67 PPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDL 146 (172)
T ss_pred cCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhc
Confidence 9999999999999999999999999998775432110 000 11 1222334 456777788889
Q ss_pred CCCHHHHHHcCccceecCC
Q 024304 235 FYTAEEAEKMGLVNTVVPV 253 (269)
Q Consensus 235 ~i~a~eA~~~GLv~~vv~~ 253 (269)
.++++||+++|++|.|+..
T Consensus 147 ~lta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 147 SLTPEEALKYGVIEVVARD 165 (172)
T ss_pred CcCHHHHHHcCCceeeeCC
Confidence 9999999999999999875
No 104
>PRK10949 protease 4; Provisional
Probab=98.96 E-value=2e-08 Score=98.60 Aligned_cols=165 Identities=23% Similarity=0.313 Sum_probs=110.7
Q ss_pred cCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhh
Q 024304 78 GEGIAKITINRP-----DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL 152 (269)
Q Consensus 78 ~~gv~~I~lnrp-----~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~ 152 (269)
++.|++|.++-. ...+.++. +.+.+.|+++.+|+++|+|||+-..| |+.... -.
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp-----GGs~~a-------------se 383 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP-----GGSVTA-------------SE 383 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC-----CCcHHH-------------HH
Confidence 567888887632 22234554 45677799999999999999988765 322211 11
Q ss_pred hHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCC------------CcccCCCChHH------
Q 024304 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGP------------KVGSFDAGYGS------ 214 (269)
Q Consensus 153 ~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~------------~~Gl~p~~g~~------ 214 (269)
.+.+-...++...||||+.+.+.|..||..++++||.++|.+.+..+...+ ++|+-..+..+
T Consensus 384 ~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~ 463 (618)
T PRK10949 384 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV 463 (618)
T ss_pred HHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence 133334455667899999999999999999999999999999877665332 12321111000
Q ss_pred -----------HHHH-----------------hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHH
Q 024304 215 -----------SIMS-----------------RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLT 264 (269)
Q Consensus 215 -----------~~l~-----------------r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la 264 (269)
..+. |.+......+ +..|+.+++++|++.||||++-..++..+.+.+++
T Consensus 464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~-ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~~a 540 (618)
T PRK10949 464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDK-IAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELA 540 (618)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH-HhcCCcccHHHHHHcCCCccCCCHHHHHHHHHHHc
Confidence 0011 1112222222 56899999999999999999998888777777665
No 105
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.95 E-value=1.4e-08 Score=83.73 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcC
Q 024304 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (269)
Q Consensus 95 l~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G 174 (269)
++..+..++.+.|..++.++..+.|+|.=..+ |+++.. ...++..|...++|+++.+.|
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSp-----GG~v~~----------------~~~i~~~i~~~~~~v~~~~~g 67 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSP-----GGDVFA----------------GMAIYDTIKFIKADVVTIIDG 67 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECC-----CCcHHH----------------HHHHHHHHHhcCCCceEEEEe
Confidence 56788899999999999887777777755443 443321 234566777889999999999
Q ss_pred cccccchhhhhccc--EEEEeCCceEecCCCCcccCCCChHHH---------------HHHhhhC--HHHHHHHHHcCCC
Q 024304 175 YAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG--PKKAREMWFLARF 235 (269)
Q Consensus 175 ~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~Gl~p~~g~~~---------------~l~r~~G--~~~a~~l~ltg~~ 235 (269)
.|.++|..|+++|| .|++.+++.|.+..+..+......-.. .+.+..| ....++++-.+.-
T Consensus 68 ~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ 147 (162)
T cd07013 68 LAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTW 147 (162)
T ss_pred ehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCcc
Confidence 99999999999999 699999999987665433221110001 1222223 4444555666677
Q ss_pred CCHHHHHHcCcccee
Q 024304 236 YTAEEAEKMGLVNTV 250 (269)
Q Consensus 236 i~a~eA~~~GLv~~v 250 (269)
++|+||+++||||++
T Consensus 148 ~sa~eA~~~GliD~i 162 (162)
T cd07013 148 LSAREAVEYGFADTI 162 (162)
T ss_pred ccHHHHHHcCCCCcC
Confidence 899999999999975
No 106
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.73 E-value=1.5e-07 Score=78.22 Aligned_cols=135 Identities=19% Similarity=0.211 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcC
Q 024304 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (269)
Q Consensus 95 l~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G 174 (269)
++.+...++...+..+..++..+.|+|.=..+ |+|+.. ...+...|...+.|+++.+.|
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSp-----GG~v~~----------------~~~i~~~l~~~~~~v~t~~~g 76 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYINSP-----GGSVTA----------------GLAIYDTMQYIKPPVSTICLG 76 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEECC-----CCCHHH----------------HHHHHHHHHhcCCCEEEEEEe
Confidence 67788999999999999876656666544333 433332 224455667778999999999
Q ss_pred cccccchhhhhccc--EEEEeCCceEecCCCCcccCCCChHH---------------HHHHhhhC--HHHHHHHHHcCCC
Q 024304 175 YAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGS---------------SIMSRLVG--PKKAREMWFLARF 235 (269)
Q Consensus 175 ~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~Gl~p~~g~~---------------~~l~r~~G--~~~a~~l~ltg~~ 235 (269)
.|.++|.-+++++| .|++.+++.|.+.++..+......-. ..+....| .....+++-.+.-
T Consensus 77 ~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~ 156 (171)
T cd07017 77 LAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRY 156 (171)
T ss_pred EehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcc
Confidence 99999999999999 89999999999988765543221000 01122223 2344556667888
Q ss_pred CCHHHHHHcCcccee
Q 024304 236 YTAEEAEKMGLVNTV 250 (269)
Q Consensus 236 i~a~eA~~~GLv~~v 250 (269)
++++||+++||+|+|
T Consensus 157 lta~EA~e~GiiD~V 171 (171)
T cd07017 157 MSAEEAKEYGLIDKI 171 (171)
T ss_pred ccHHHHHHcCCCccC
Confidence 999999999999986
No 107
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.68 E-value=3.6e-07 Score=78.29 Aligned_cols=139 Identities=20% Similarity=0.203 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (269)
Q Consensus 94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~ 173 (269)
.++.++..++...|..++..+..+.|.|.=..+ |+++.. ...++..|..++.|+++.+.
T Consensus 43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSp-----GG~v~~----------------g~~I~d~i~~~~~~v~t~~~ 101 (207)
T PRK12553 43 QVDDASANDVMAQLLVLESIDPDRDITLYINSP-----GGSVTA----------------GDAIYDTIQFIRPDVQTVCT 101 (207)
T ss_pred eECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCC-----CCcHHH----------------HHHHHHHHHhcCCCcEEEEE
Confidence 378899999999999998765444444433222 333322 23456677778889999999
Q ss_pred Ccccccchhhhhccc--EEEEeCCceEecCCCCc-ccCCCChH----------------HHHHHhhhC--HHHHHHHHHc
Q 024304 174 GYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKV-GSFDAGYG----------------SSIMSRLVG--PKKAREMWFL 232 (269)
Q Consensus 174 G~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~-Gl~p~~g~----------------~~~l~r~~G--~~~a~~l~lt 232 (269)
|.|.+.|.-|+++|| .|++.+++.|.+..+.. |..-+-.. ...+.+..| .....+++-.
T Consensus 102 G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~ 181 (207)
T PRK12553 102 GQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDR 181 (207)
T ss_pred eehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhc
Confidence 999999999999999 59999999999887653 21111100 112233334 3455566677
Q ss_pred CCCCCHHHHHHcCccceecCC
Q 024304 233 ARFYTAEEAEKMGLVNTVVPV 253 (269)
Q Consensus 233 g~~i~a~eA~~~GLv~~vv~~ 253 (269)
+..++|+||+++||||+|++.
T Consensus 182 ~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 182 DKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred CccccHHHHHHcCCccEEcCc
Confidence 889999999999999999865
No 108
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.65 E-value=7.6e-07 Score=75.85 Aligned_cols=140 Identities=19% Similarity=0.162 Sum_probs=93.2
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEE
Q 024304 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (269)
Q Consensus 93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v 172 (269)
..++.++...+...|..++.++..+-|.|.=..+ |+|+.. ...++..|...+.|+++.+
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSp-----GG~v~~----------------g~~I~d~i~~~~~~v~t~~ 96 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSP-----GGSVTA----------------GLAIYDTMQFIKPDVSTIC 96 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECC-----CCcHHH----------------HHHHHHHHHhcCCCEEEEE
Confidence 4477889999999999888654444444432222 333222 2244556777788999999
Q ss_pred cCcccccchhhhhccc--EEEEeCCceEecCCCCcccCCCChHH---------------HHHHhhhC--HHHHHHHHHcC
Q 024304 173 AGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGS---------------SIMSRLVG--PKKAREMWFLA 233 (269)
Q Consensus 173 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~Gl~p~~g~~---------------~~l~r~~G--~~~a~~l~ltg 233 (269)
.|.|.++|..|+++++ .|++.+++.|.+..+.-|......-. ..+....| .....+++-.+
T Consensus 97 ~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~ 176 (200)
T PRK00277 97 IGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRD 176 (200)
T ss_pred EeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCC
Confidence 9999999999988754 68898999988876543321111000 11233334 34445555667
Q ss_pred CCCCHHHHHHcCccceecCC
Q 024304 234 RFYTAEEAEKMGLVNTVVPV 253 (269)
Q Consensus 234 ~~i~a~eA~~~GLv~~vv~~ 253 (269)
.-++|+||+++||+|+|+..
T Consensus 177 ~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 177 NFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred ccccHHHHHHcCCccEEeec
Confidence 78999999999999999864
No 109
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.60 E-value=6.7e-07 Score=81.33 Aligned_cols=162 Identities=17% Similarity=0.168 Sum_probs=100.5
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHH
Q 024304 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (269)
Q Consensus 78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (269)
.+.|++|.|+.+=..+.. ..+.+++...+..+..+ +.|||+-..| |+.+... +. ....
T Consensus 89 ~~~v~VI~~~G~I~~~~~-~~l~e~i~a~l~~A~~~---~aVvLridSp-----GG~v~~s---------~~----a~~~ 146 (330)
T PRK11778 89 KPRLFVLDFKGDIDASEV-ESLREEITAILAVAKPG---DEVLLRLESP-----GGVVHGY---------GL----AASQ 146 (330)
T ss_pred CCeEEEEEEEEEECCCcc-hhhHHHHHHHHHhccCC---CeEEEEEeCC-----CCchhHH---------HH----HHHH
Confidence 467999998854321211 13445555555555433 4777776554 3322110 00 1112
Q ss_pred HHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHH-----------------------
Q 024304 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGS----------------------- 214 (269)
Q Consensus 158 ~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~----------------------- 214 (269)
..+++...||+++.+++.|..||+.|+++||.+++.+.+.++..++... .|.....
T Consensus 147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~pf 225 (330)
T PRK11778 147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLTLF 225 (330)
T ss_pred HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCCCC
Confidence 3456778899999999999999999999999999999998887543211 1111000
Q ss_pred --------H-----------HHHhhhCHH---HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHH
Q 024304 215 --------S-----------IMSRLVGPK---KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMS 262 (269)
Q Consensus 215 --------~-----------~l~r~~G~~---~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~ 262 (269)
. .+...+-.. ...+-+.+|+.++|++|++.||||++...+++...+.+
T Consensus 226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~ 295 (330)
T PRK11778 226 GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMK 295 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHh
Confidence 0 011111111 12334568999999999999999999988877665544
No 110
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.59 E-value=1.2e-06 Score=74.53 Aligned_cols=143 Identities=16% Similarity=0.105 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcC
Q 024304 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (269)
Q Consensus 95 l~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G 174 (269)
++.++...+...|..++..+..+.|.|.=+.+ |+++.. ...+...|...+.||++.+.|
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSp-----GG~v~a----------------g~aI~d~i~~~~~~V~t~v~G 90 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYIDSE-----GGDIDA----------------GFAIFNMIRFVKPKVFTIGVG 90 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEECC-----CCCHHH----------------HHHHHHHHHhCCCCEEEEEEe
Confidence 66788889999888887633334444433222 333322 234556777889999999999
Q ss_pred cccccchhhhhcccE--EEEeCCceEecCCCCcccCCCChHHH---------------HHHhhhC--HHHHHHHHHcCCC
Q 024304 175 YAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG--PKKAREMWFLARF 235 (269)
Q Consensus 175 ~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p~~g~~~---------------~l~r~~G--~~~a~~l~ltg~~ 235 (269)
.|.+.|.-|+++||- |++.+++.|.+..+.-+......-.. .+....| .....+++-...-
T Consensus 91 ~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~ 170 (197)
T PRK14512 91 LVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFW 170 (197)
T ss_pred eeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcc
Confidence 999999999999985 99999999987665433322111000 1122223 2344455555678
Q ss_pred CCHHHHHHcCccceecCC-CcHHH
Q 024304 236 YTAEEAEKMGLVNTVVPV-SLFVA 258 (269)
Q Consensus 236 i~a~eA~~~GLv~~vv~~-e~l~~ 258 (269)
++++||+++||+|+|++. ++|.+
T Consensus 171 lta~EA~~yGliD~I~~~~~~l~~ 194 (197)
T PRK14512 171 LDSSSAVKYGLVFEVVETRLELEE 194 (197)
T ss_pred cCHHHHHHcCCccEeecCcHHhHh
Confidence 999999999999999965 44544
No 111
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.58 E-value=2.4e-07 Score=77.61 Aligned_cols=136 Identities=21% Similarity=0.296 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEE--EEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEE
Q 024304 95 FRPHTVKELIRAFNDARDDSSVGVI--ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (269)
Q Consensus 95 l~~~~~~~L~~al~~~~~d~~~~vv--Vl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v 172 (269)
++.++...+.+.|..++..+..+-+ .|.+. |+|+.. ...+...|..++.|++..+
T Consensus 25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp-------GG~v~~----------------g~~i~~~i~~~~~~v~t~~ 81 (182)
T PF00574_consen 25 IDEESANRLISQLLYLENEDKNKPINIYINSP-------GGDVDA----------------GLAIYDAIRSSKAPVTTVV 81 (182)
T ss_dssp BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC-------EBCHHH----------------HHHHHHHHHHSSSEEEEEE
T ss_pred cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC-------CCccHH----------------HHHHHHHHHhcCCCeEEEE
Confidence 7889999999988877433322322 23333 444332 3356678888999999999
Q ss_pred cCcccccchhhhhcccE--EEEeCCceEecCCCCcccCCCChHHH---------------HHHhhhC--HHHHHHHHHcC
Q 024304 173 AGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG--PKKAREMWFLA 233 (269)
Q Consensus 173 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p~~g~~~---------------~l~r~~G--~~~a~~l~ltg 233 (269)
.|.|.+.|.-+.++||. |++.+++.|.+.++..+......-.. .+....| .....+++-..
T Consensus 82 ~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~ 161 (182)
T PF00574_consen 82 LGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRD 161 (182)
T ss_dssp EEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSST
T ss_pred eCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCC
Confidence 99999999999999999 89999999999888765433111111 1122223 23334444445
Q ss_pred CCCCHHHHHHcCccceecCC
Q 024304 234 RFYTAEEAEKMGLVNTVVPV 253 (269)
Q Consensus 234 ~~i~a~eA~~~GLv~~vv~~ 253 (269)
.-++++||+++||+|+|+..
T Consensus 162 ~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 162 TWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp EEEEHHHHHHHTSSSEEESS
T ss_pred ccccHHHHHHcCCCCEeccC
Confidence 57899999999999999754
No 112
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.56 E-value=4.1e-08 Score=88.97 Aligned_cols=171 Identities=11% Similarity=0.067 Sum_probs=136.8
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc-hhhhhhhhHHHH
Q 024304 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD-YENFGRLNVLDL 157 (269)
Q Consensus 79 ~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~-~~~~~~~~~~~l 157 (269)
.++..+.++ |+. |..|.++..+|..-++.++.+..+++.++|+-....|++|.|..++....... ...+ ..++++
T Consensus 65 ~~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~--m~LlEi 140 (380)
T KOG1683|consen 65 TGFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHW--MQLLEI 140 (380)
T ss_pred cccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHH--HHHHHH
Confidence 378888887 665 99999999999999999999998899999998888999999998875433211 1221 135678
Q ss_pred HHHHhcCCCcEEEEEcCcccccc--hhhhhcccEEEEeC--CceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcC
Q 024304 158 QVQIRRLPKPVIAMVAGYAVGGG--HVLHMVCDLTIAAD--NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233 (269)
Q Consensus 158 ~~~i~~~~kP~Ia~v~G~a~GgG--~~lal~~D~~ia~~--~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg 233 (269)
+.....++.|+.+++||.+--|+ +.++-+|+|++... .-..+..+..+++.-+-+-...+...+|...+-.-+-.+
T Consensus 141 i~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~ 220 (380)
T KOG1683|consen 141 ILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADG 220 (380)
T ss_pred HHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhc
Confidence 88889999999999999998888 88999999999984 333456667777544444555666667777777777788
Q ss_pred CCCCHHHHHHcCccceecCC
Q 024304 234 RFYTAEEAEKMGLVNTVVPV 253 (269)
Q Consensus 234 ~~i~a~eA~~~GLv~~vv~~ 253 (269)
.-++-.||.+-|+++.+.|.
T Consensus 221 ~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 221 VGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCccHHHHHhhccchhccch
Confidence 99999999999999999995
No 113
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.54 E-value=8.1e-07 Score=80.89 Aligned_cols=144 Identities=23% Similarity=0.269 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccccc
Q 024304 100 VKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179 (269)
Q Consensus 100 ~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~Gg 179 (269)
.+...+.|+.+..|++++.|||.=..| |+.... -..+.+.+..+..-. |+++.|.+.|..|
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~inSP-----GG~v~a-------------s~~i~~~l~~l~~~~-PV~v~v~~~AASG 142 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRINSP-----GGSVVA-------------SELIARALKRLRAKK-PVVVSVGGYAASG 142 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEECc-----CCchhH-------------HHHHHHHHHHHhhcC-CEEEEECCeecch
Confidence 455666689999999999999976554 332221 111333344554444 9999999999999
Q ss_pred chhhhhcccEEEEeCCceEecCCCCcccCCCChHHH------------------------------------------HH
Q 024304 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS------------------------------------------IM 217 (269)
Q Consensus 180 G~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~------------------------------------------~l 217 (269)
|..++++||.+||++.+..|--.+..+ .|...... .+
T Consensus 143 GY~IA~aAd~I~a~p~si~GSIGVi~~-~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F 221 (317)
T COG0616 143 GYYIALAADKIVADPSSITGSIGVISG-APNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDEF 221 (317)
T ss_pred hhhhhccCCEEEecCCceeeeceeEEe-cCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887655444 22111111 01
Q ss_pred Hhhh-----CHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHH
Q 024304 218 SRLV-----GPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSL 263 (269)
Q Consensus 218 ~r~~-----G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~l 263 (269)
...+ .......-+.+|+-+++++|++.||||++...++....+...
T Consensus 222 ~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~ 272 (317)
T COG0616 222 VDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAEL 272 (317)
T ss_pred HHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHh
Confidence 1111 111223346789999999999999999999887766666554
No 114
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.49 E-value=5.4e-06 Score=72.84 Aligned_cols=95 Identities=20% Similarity=0.390 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEE
Q 024304 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (269)
Q Consensus 93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v 172 (269)
+.++.+..+++.++++...++..+ .++|...|+ ++.. ..++...+.+++.++++.|
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~~I-dLii~TpGG-------~v~A----------------A~~I~~~l~~~~~~v~v~V 125 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDKPI-DLIIHTPGG-------LVDA----------------AEQIARALREHPAKVTVIV 125 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCCce-EEEEECCCC-------cHHH----------------HHHHHHHHHhCCCCEEEEE
Confidence 568899999999999998877665 344554443 2221 2355668888999999999
Q ss_pred cCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCC
Q 024304 173 AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG 211 (269)
Q Consensus 173 ~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~ 211 (269)
..+|+.+|.-++++||-.++.+.+.+|...+.+|-.|..
T Consensus 126 P~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~ 164 (285)
T PF01972_consen 126 PHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAA 164 (285)
T ss_pred CcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChH
Confidence 999999999999999999999999999999999988854
No 115
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.46 E-value=4.4e-06 Score=70.69 Aligned_cols=138 Identities=17% Similarity=0.153 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (269)
Q Consensus 94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~ 173 (269)
.++.++..++...|..++.++..+-|.|.=+.+ |+|+.. ...++..+...+.|+...+.
T Consensus 34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSp-----GG~v~~----------------g~~I~d~l~~~~~~v~t~~~ 92 (191)
T TIGR00493 34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYINSP-----GGSITA----------------GLAIYDTMQFIKPDVSTICI 92 (191)
T ss_pred EEChHHHHHHHHHHHHhhccCCCCCEEEEEECC-----CCCHHH----------------HHHHHHHHHhcCCCEEEEEE
Confidence 366778888888888887655444454433322 444322 22344566666667777788
Q ss_pred Ccccccchhhhhccc--EEEEeCCceEecCCCCcccCCCChHH---------------HHHHhhhC--HHHHHHHHHcCC
Q 024304 174 GYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGS---------------SIMSRLVG--PKKAREMWFLAR 234 (269)
Q Consensus 174 G~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~Gl~p~~g~~---------------~~l~r~~G--~~~a~~l~ltg~ 234 (269)
|.|.+.|.-|++++| .|++.+++.|.+..+.-|......-. ..+.+..| .....+++-.+.
T Consensus 93 G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~ 172 (191)
T TIGR00493 93 GQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDF 172 (191)
T ss_pred EeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCc
Confidence 999999998888766 69999999999977654322111111 11333334 345556666778
Q ss_pred CCCHHHHHHcCccceecC
Q 024304 235 FYTAEEAEKMGLVNTVVP 252 (269)
Q Consensus 235 ~i~a~eA~~~GLv~~vv~ 252 (269)
-++|+||+++||+|+|+.
T Consensus 173 ~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 173 FMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred cCcHHHHHHcCCccEEec
Confidence 899999999999999975
No 116
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.45 E-value=5e-06 Score=70.77 Aligned_cols=139 Identities=17% Similarity=0.133 Sum_probs=95.6
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (269)
Q Consensus 94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~ 173 (269)
.++.++..++...|-.++.+...+-+.|.=+. .|+|+.. ...++..+...+-||...+.
T Consensus 38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INS-----pGG~v~~----------------g~aIyd~m~~~~~~V~Tv~~ 96 (200)
T CHL00028 38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFINS-----PGGSVIS----------------GLAIYDTMQFVKPDVHTICL 96 (200)
T ss_pred eecHHHHHHHHHHHHHHhccCCCCCEEEEEeC-----CCcchhh----------------HHHHHHHHHhcCCCEEEEEE
Confidence 38889999999999988754333444333222 1333221 23456677788899999999
Q ss_pred Ccccccchhhhhccc--EEEEeCCceEecCCCCcccCCCChHHH-----------------HHHhhhCH--HHHHHHHHc
Q 024304 174 GYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSS-----------------IMSRLVGP--KKAREMWFL 232 (269)
Q Consensus 174 G~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~Gl~p~~g~~~-----------------~l~r~~G~--~~a~~l~lt 232 (269)
|.|.+.|.-|++++| .|++.++++|.+..+..|..- +-... .+....|. ....+++-.
T Consensus 97 G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~-G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r 175 (200)
T CHL00028 97 GLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYE-GQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMER 175 (200)
T ss_pred EehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 999999999999999 699999999999887655221 11111 12222342 233455556
Q ss_pred CCCCCHHHHHHcCccceecCCC
Q 024304 233 ARFYTAEEAEKMGLVNTVVPVS 254 (269)
Q Consensus 233 g~~i~a~eA~~~GLv~~vv~~e 254 (269)
..-++|+||+++||||+|+.+.
T Consensus 176 ~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 176 DVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred CccCCHHHHHHcCCCcEEeecC
Confidence 6789999999999999998653
No 117
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.42 E-value=1.8e-05 Score=69.83 Aligned_cols=138 Identities=21% Similarity=0.238 Sum_probs=91.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCceEEEE-EcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEE
Q 024304 92 RNAFRPHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA 170 (269)
Q Consensus 92 ~Nal~~~~~~~L~~al~~~~~d~~~~vvVl-~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia 170 (269)
..+++++-.....+.++.+.+.. +=+|-| -+.| ++. |.+.+. ... -..+......+.....|+|+
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~~-lPvV~lvDtpG--a~~-g~~aE~---------~G~-~~~ia~~~~~~s~~~VP~Is 141 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKFG-RPVVTFINTAG--AYP-GVGAEE---------RGQ-GEAIARNLMEMSDLKVPIIA 141 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCC--cCC-CHhHHh---------ccH-HHHHHHHHHHHhCCCCCEEE
Confidence 46788999999999999887654 334444 3333 342 433221 011 11234555677789999999
Q ss_pred EEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCcccee
Q 024304 171 MVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250 (269)
Q Consensus 171 ~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~v 250 (269)
.|-|.|.|||......||++++.+++.|+.- ++.+.+..+-+-- .++.+. -.-..+++.++++.|+||.|
T Consensus 142 VI~G~~~gGgA~a~~~~D~v~m~~~a~~~v~-------~pe~~a~il~~~~--~~a~~a-a~~~~~~a~~l~~~g~iD~i 211 (256)
T PRK12319 142 IIIGEGGSGGALALAVADQVWMLENTMYAVL-------SPEGFASILWKDG--SRATEA-AELMKITAGELLEMGVVDKV 211 (256)
T ss_pred EEeCCcCcHHHHHhhcCCEEEEecCceEEEc-------CHHHHHHHHhcCc--ccHHHH-HHHcCCCHHHHHHCCCCcEe
Confidence 9999999998888889999999999988752 2333344443321 122221 11227799999999999999
Q ss_pred cCC
Q 024304 251 VPV 253 (269)
Q Consensus 251 v~~ 253 (269)
+|.
T Consensus 212 i~e 214 (256)
T PRK12319 212 IPE 214 (256)
T ss_pred cCC
Confidence 974
No 118
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.32 E-value=3.7e-05 Score=69.57 Aligned_cols=139 Identities=15% Similarity=0.175 Sum_probs=91.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEE
Q 024304 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (269)
Q Consensus 92 ~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~ 171 (269)
..+++++-.....+.++.+++..--=+-++-+.| +++ |.+..+.. . ...+......+.....|+|+.
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpG--A~~-G~~AE~~G---------~-~~aiar~l~~~a~~~VP~IsV 198 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKFGLPILTFIDTPG--AWA-GVKAEKLG---------Q-GEAIAVNLREMFSFEVPIICT 198 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC--cCc-CHHHHHHh---------H-HHHHHHHHHHHHcCCCCEEEE
Confidence 4678999999999999988765422233334333 444 43222110 1 112334455667899999999
Q ss_pred EcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceec
Q 024304 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251 (269)
Q Consensus 172 v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv 251 (269)
|-|.|.|||.-....||++++.++++|+.- ++-+.+..+-+- ..++.+. -..-.+++++.+++|+||.|+
T Consensus 199 ViGeggsGGAlal~~aD~V~m~e~a~~sVi-------sPEg~a~Il~~d--~~~a~~a-A~~~~ita~dL~~~giiD~ii 268 (322)
T CHL00198 199 IIGEGGSGGALGIGIGDSIMMLEYAVYTVA-------TPEACAAILWKD--SKKSLDA-AEALKITSEDLKVLGIIDEII 268 (322)
T ss_pred EeCcccHHHHHhhhcCCeEEEeCCeEEEec-------CHHHHHHHHhcc--hhhHHHH-HHHcCCCHHHHHhCCCCeEec
Confidence 999998888655557999999999998752 333344444332 2222222 333489999999999999999
Q ss_pred CC
Q 024304 252 PV 253 (269)
Q Consensus 252 ~~ 253 (269)
|.
T Consensus 269 ~E 270 (322)
T CHL00198 269 PE 270 (322)
T ss_pred cC
Confidence 73
No 119
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.31 E-value=1.8e-05 Score=67.20 Aligned_cols=140 Identities=15% Similarity=0.122 Sum_probs=94.3
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (269)
Q Consensus 94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~ 173 (269)
.++.++..++...|..++.+...+-+.|.=+.+ |+|+.. ...++..+...+-||...+.
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSp-----GG~v~~----------------g~aIyd~m~~~~~~V~t~~~ 91 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSP-----GGSVYD----------------GLGIFDTMQHVKPDVHTVCV 91 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCC-----Ccchhh----------------HHHHHHHHHhcCCCEEEEEE
Confidence 388899999999999887543334343332222 333322 22445677778889999999
Q ss_pred CcccccchhhhhcccE--EEEeCCceEecCCCCcccCCCChHHH---------------HHHhhhCH--HHHHHHHHcCC
Q 024304 174 GYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVGP--KKAREMWFLAR 234 (269)
Q Consensus 174 G~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p~~g~~~---------------~l~r~~G~--~~a~~l~ltg~ 234 (269)
|.|.+.|.-|++++|- |++.+++.+.+..+.-|......-.. .+.+..|. ....+++-...
T Consensus 92 G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~ 171 (196)
T PRK12551 92 GLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDF 171 (196)
T ss_pred EEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCc
Confidence 9999999999999985 88999999998777544221111011 12233343 23345555566
Q ss_pred CCCHHHHHHcCccceecCCC
Q 024304 235 FYTAEEAEKMGLVNTVVPVS 254 (269)
Q Consensus 235 ~i~a~eA~~~GLv~~vv~~e 254 (269)
-++|+||+++||+|+|++..
T Consensus 172 ~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 172 FMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CCCHHHHHHcCCCcEEeccC
Confidence 79999999999999999764
No 120
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.26 E-value=2.8e-05 Score=67.08 Aligned_cols=136 Identities=16% Similarity=0.146 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHHhhcC---CCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEE
Q 024304 94 AFRPHTVKELIRAFNDARDD---SSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA 170 (269)
Q Consensus 94 al~~~~~~~L~~al~~~~~d---~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia 170 (269)
.++..+...+...|..++.. ..+.+.| -+.| +++.. ...++..+...+-||..
T Consensus 62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~lyI-NSpG-------Gsv~a----------------GlaIyd~m~~~~~~V~t 117 (221)
T PRK14514 62 QIDDYTANTIQAQLLYLDSVDPGKDISIYI-NSPG-------GSVYA----------------GLGIYDTMQFISSDVAT 117 (221)
T ss_pred EEcHHHHHHHHHHHHHHhccCCCCCEEEEE-ECCC-------cchhh----------------HHHHHHHHHhcCCCEEE
Confidence 36778888888877666543 3333333 3333 22221 12345677778889999
Q ss_pred EEcCcccccchhhhhcccE--EEEeCCceEecCCCCcccCCCChHHH---------------HHHhhhCH--HHHHHHHH
Q 024304 171 MVAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVGP--KKAREMWF 231 (269)
Q Consensus 171 ~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p~~g~~~---------------~l~r~~G~--~~a~~l~l 231 (269)
.+.|.|.+.|.-|++++|. |++.+++.|.+..+.-|......-.. .+.+..|. ....+++-
T Consensus 118 v~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~ 197 (221)
T PRK14514 118 ICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSD 197 (221)
T ss_pred EEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 9999999999999999996 99999999998777544322111000 12223342 33345555
Q ss_pred cCCCCCHHHHHHcCccceecCC
Q 024304 232 LARFYTAEEAEKMGLVNTVVPV 253 (269)
Q Consensus 232 tg~~i~a~eA~~~GLv~~vv~~ 253 (269)
...-++|+||+++||||+|+..
T Consensus 198 rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 198 RDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred cCccCCHHHHHHcCCccEEeec
Confidence 5678999999999999999864
No 121
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.25 E-value=3e-05 Score=65.99 Aligned_cols=137 Identities=20% Similarity=0.242 Sum_probs=94.3
Q ss_pred CCCCHHHHHHHHHHHHHhhcCC---CceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEE
Q 024304 93 NAFRPHTVKELIRAFNDARDDS---SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVI 169 (269)
Q Consensus 93 Nal~~~~~~~L~~al~~~~~d~---~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 169 (269)
..++.++...+...|..++.++ .+.+. |-+.| +|+.. ...++..|...+-||.
T Consensus 34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~-INSpG-------G~v~~----------------GlaIyd~m~~~~~~V~ 89 (201)
T PRK14513 34 TPIESQMANTIVAQLLLLDSQNPEQEIQMY-INCPG-------GEVYA----------------GLAIYDTMRYIKAPVS 89 (201)
T ss_pred CEEcHHHHHHHHHHHHHhhccCCCCCEEEE-EECCC-------Cchhh----------------HHHHHHHHHhcCCCEE
Confidence 3478888888888887777543 23332 23333 33221 2345667778888999
Q ss_pred EEEcCcccccchhhhhcccE--EEEeCCceEecCCCCcccCCCChHHH-----------------HHHhhhCH--HHHHH
Q 024304 170 AMVAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS-----------------IMSRLVGP--KKARE 228 (269)
Q Consensus 170 a~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p~~g~~~-----------------~l~r~~G~--~~a~~ 228 (269)
..+.|.|.+.+.-|++++|- |++.+++.+-+..+..|.. +.... .+.+..|. ..-.+
T Consensus 90 Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~ 167 (201)
T PRK14513 90 TICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLR 167 (201)
T ss_pred EEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999996 9999999999887765532 11121 12233342 33344
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCc
Q 024304 229 MWFLARFYTAEEAEKMGLVNTVVPVSL 255 (269)
Q Consensus 229 l~ltg~~i~a~eA~~~GLv~~vv~~e~ 255 (269)
++-...-++|+||+++||+|+|+++.+
T Consensus 168 ~~~rd~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 168 DMERDYFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred HhccCcccCHHHHHHcCCCcEEeccCC
Confidence 555566799999999999999997643
No 122
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.25 E-value=6.1e-05 Score=70.03 Aligned_cols=136 Identities=21% Similarity=0.243 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEE-EcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEE
Q 024304 93 NAFRPHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (269)
Q Consensus 93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl-~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~ 171 (269)
.+++++-.....+.++.++... +=+|-| -..| ++ .|.+.++.. . ...+......+....+|+|+.
T Consensus 200 G~~~peGyRKAlR~mklAekf~-lPIVtLVDTpG--A~-pG~~AEe~G---------q-a~aIAr~l~ams~l~VPiISV 265 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKFG-FPILTFVDTPG--AY-AGIKAEELG---------Q-GEAIAFNLREMFGLRVPIIAT 265 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCC--cC-CCHHHHHHh---------H-HHHHHHHHHHHhcCCCCEEEE
Confidence 5788999999999999887654 334444 3333 33 333322211 1 112444566778999999999
Q ss_pred EcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHh-hhCHHHHHHHHHcCCCCCHHHHHHcCcccee
Q 024304 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR-LVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250 (269)
Q Consensus 172 v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r-~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~v 250 (269)
|-|.+.+||.....+||++++.+++.++.- ++.+.+..|-+ ..-...+.+ .-.++++++++.|+||.|
T Consensus 266 ViGeGgSGGAlalg~aD~VlMle~A~ysVi-------sPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~I 334 (431)
T PLN03230 266 VIGEGGSGGALAIGCGNRMLMMENAVYYVA-------SPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEI 334 (431)
T ss_pred EeCCCCcHHHHHhhcCCEEEEecCCEEEec-------CHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEe
Confidence 999996666554557899999999987652 22333434332 211222222 338999999999999999
Q ss_pred cCC
Q 024304 251 VPV 253 (269)
Q Consensus 251 v~~ 253 (269)
+|.
T Consensus 335 I~E 337 (431)
T PLN03230 335 VPE 337 (431)
T ss_pred ccC
Confidence 973
No 123
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.22 E-value=8.9e-05 Score=67.16 Aligned_cols=139 Identities=20% Similarity=0.238 Sum_probs=92.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEE
Q 024304 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (269)
Q Consensus 92 ~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~ 171 (269)
..+++++-.....+.++.++.-. +=+|-|.=.. ++++ |.+.++. .. ...+......+.....|+|+.
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f~-lPIVtlvDTp-Ga~~-G~~aE~~---------G~-~~aia~~l~~~a~~~VP~IsV 195 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKFG-LPIITFIDTP-GAYP-GIGAEER---------GQ-SEAIARNLREMARLKVPIICT 195 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC-CCCC-CHHHHhc---------cH-HHHHHHHHHHHhCCCCCEEEE
Confidence 46788999999999988887653 4444443322 1443 4433221 01 112445566778999999999
Q ss_pred EcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceec
Q 024304 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251 (269)
Q Consensus 172 v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv 251 (269)
|-|.|.|||......||++++.+++.|+. +++.+.+..+-+. ...+.+..- ...++++++++.|+||.|+
T Consensus 196 IiGeg~sGGAla~~~aD~v~m~~~A~~sv-------isPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II 265 (319)
T PRK05724 196 VIGEGGSGGALAIGVGDRVLMLEYSTYSV-------ISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEII 265 (319)
T ss_pred EeCCccHHHHHHHhccCeeeeecCceEee-------cCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEec
Confidence 99999888775555699999999998864 3444445555432 223333333 5579999999999999999
Q ss_pred CC
Q 024304 252 PV 253 (269)
Q Consensus 252 ~~ 253 (269)
|.
T Consensus 266 ~E 267 (319)
T PRK05724 266 PE 267 (319)
T ss_pred cC
Confidence 73
No 124
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.20 E-value=7.8e-05 Score=73.43 Aligned_cols=139 Identities=16% Similarity=0.143 Sum_probs=91.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEE
Q 024304 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (269)
Q Consensus 92 ~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~ 171 (269)
..+.+++-+....+.++.++...--=+-++-+.| +++ |.+.+... . ...+......+.....|+|+.
T Consensus 220 fG~~~peGyRKAlRlmkLAekfgLPIVtLVDTpG--A~p-G~~AEe~G---------q-~~aIArnl~amasl~VP~ISV 286 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG--AYA-DLKSEELG---------Q-GEAIAHNLRTMFGLKVPIVSI 286 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCC--cCC-CchhHHHh---------H-HHHHHHHHHHHhCCCCCEEEE
Confidence 4688899899999988888765422233334433 443 33332211 1 112344556777899999999
Q ss_pred EcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceec
Q 024304 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251 (269)
Q Consensus 172 v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv 251 (269)
|-|.|.|||.-....||++++.++++|+. .++.+.+..+-+-.. ++.+ +-..-.+++++.+++|+||.|+
T Consensus 287 ViGeggSGGAlA~g~aD~VlMle~A~~sV-------isPEgaAsILwkd~~--~A~e-AAe~lkiTa~dL~~lGiiD~II 356 (762)
T PLN03229 287 VIGEGGSGGALAIGCANKLLMLENAVFYV-------ASPEACAAILWKSAK--AAPK-AAEKLRITAQELCRLQIADGII 356 (762)
T ss_pred EeCCcchHHHHHhhcCCEEEEecCCeEEe-------cCHHHHHHHHhcCcc--cHHH-HHHHcCCCHHHHHhCCCCeeec
Confidence 99999888887777899999999988765 233334444433211 2222 2334489999999999999999
Q ss_pred CC
Q 024304 252 PV 253 (269)
Q Consensus 252 ~~ 253 (269)
|.
T Consensus 357 pE 358 (762)
T PLN03229 357 PE 358 (762)
T ss_pred cC
Confidence 73
No 125
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.15 E-value=0.00014 Score=65.74 Aligned_cols=138 Identities=20% Similarity=0.217 Sum_probs=89.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCceEEEE-EcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEE
Q 024304 92 RNAFRPHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA 170 (269)
Q Consensus 92 ~Nal~~~~~~~L~~al~~~~~d~~~~vvVl-~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia 170 (269)
..+++++-.....+.++.++.-. +=+|-| -+.| +++ |.+.++.. . ...+......+.....|+|+
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f~-iPvVtlvDTpG--a~~-g~~aE~~G---------~-~~aia~~l~a~s~~~VP~Is 194 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERFK-MPIITFIDTPG--AYP-GIGAEERG---------Q-SEAIARNLREMARLGVPVIC 194 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCC--CCC-CHHHHHHH---------H-HHHHHHHHHHHHcCCCCEEE
Confidence 46788999999999999887654 334444 3333 333 43322211 1 11234455667789999999
Q ss_pred EEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCcccee
Q 024304 171 MVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250 (269)
Q Consensus 171 ~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~v 250 (269)
.|-|.|.|||......||++++.+++.++. .++.+.+..+-+- ..++.+..- -..+++.++++.|+||.|
T Consensus 195 VViGeggsGGAla~~~aD~v~m~~~a~~sV-------isPEg~a~Il~kd--~~~a~~aae-~~~~ta~~l~~~G~iD~I 264 (316)
T TIGR00513 195 TVIGEGGSGGALAIGVGDKVNMLEYSTYSV-------ISPEGCAAILWKD--ASKAPKAAE-AMKITAPDLKELGLIDSI 264 (316)
T ss_pred EEecccccHHHhhhccCCEEEEecCceEEe-------cCHHHHHHHhccc--hhhHHHHHH-HccCCHHHHHHCCCCeEe
Confidence 999999777775555799999999998865 3333444444332 112222211 257789999999999999
Q ss_pred cCC
Q 024304 251 VPV 253 (269)
Q Consensus 251 v~~ 253 (269)
+|.
T Consensus 265 I~e 267 (316)
T TIGR00513 265 IPE 267 (316)
T ss_pred ccC
Confidence 973
No 126
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.13 E-value=3.5e-05 Score=75.77 Aligned_cols=86 Identities=19% Similarity=0.197 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccc
Q 024304 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (269)
Q Consensus 98 ~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~ 177 (269)
..+.++.++++++.+|+.|++|||.-.+. .|+++..+. .+.+.+..+....|||||..++++
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~----~g~~~~~~~-------------ei~~ai~~fk~sgKpVvA~~~~~~- 137 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNF----SGWDSPHLV-------------EIGSALSEFKDSGKPVYAYGTNYS- 137 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCC----CCCCHHHHH-------------HHHHHHHHHHhcCCeEEEEEcccc-
Confidence 45679999999999999999999987542 233322211 133444566677899999988775
Q ss_pred ccchhhhhcccEEEEeCCceEecC
Q 024304 178 GGGHVLHMVCDLTIAADNAIFGQT 201 (269)
Q Consensus 178 GgG~~lal~~D~~ia~~~a~f~~~ 201 (269)
-+|+-|+.+||-+++.+.+.++..
T Consensus 138 s~~YylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 138 QGQYYLASFADEIILNPMGSVDLH 161 (584)
T ss_pred chhhhhhhhCCEEEECCCceEEee
Confidence 678999999999999999888664
No 127
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=98.11 E-value=2.9e-06 Score=69.25 Aligned_cols=103 Identities=24% Similarity=0.314 Sum_probs=67.2
Q ss_pred hcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCC------------ccc---------CCCCh-----HH-
Q 024304 162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK------------VGS---------FDAGY-----GS- 214 (269)
Q Consensus 162 ~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~------------~Gl---------~p~~g-----~~- 214 (269)
.+..|||||.++|.+..+++.|+++||-+++.+.+.++..... +|+ +-..+ .+
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s~ 82 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMSE 82 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--H
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCCH
Confidence 4688999999999999999999999999999999998876522 111 11111 11
Q ss_pred ---HHHHh-----------hhCHHH-----HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHH
Q 024304 215 ---SIMSR-----------LVGPKK-----AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLT 264 (269)
Q Consensus 215 ---~~l~r-----------~~G~~~-----a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la 264 (269)
..+.+ .+-..+ ..+-+..|..+++++|++.||||++...|++.+.+.+++
T Consensus 83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~~ 151 (154)
T PF01343_consen 83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKLA 151 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHHc
Confidence 01111 111111 112257899999999999999999999998888877764
No 128
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=98.06 E-value=0.00017 Score=64.16 Aligned_cols=161 Identities=17% Similarity=0.246 Sum_probs=99.0
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCC----CceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHH
Q 024304 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS----SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL 155 (269)
Q Consensus 80 gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~----~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~ 155 (269)
.|..+..+..-...++....-+.+.++++.+.+|. .+-+|.|.-.| |.-+.+ .. ...... ..+.
T Consensus 60 ~v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg------GaRlqE---g~-~~L~~~--a~i~ 127 (274)
T TIGR03133 60 PVVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG------GVRLQE---AN-AGLIAI--AEIM 127 (274)
T ss_pred EEEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC------CcChhh---hH-HHHHHH--HHHH
Confidence 45555555555667899888899999999987621 12355554433 222221 00 000000 1122
Q ss_pred HHHHHHhcCCCcEEEEEcCc--ccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH--HHHHHHHH
Q 024304 156 DLQVQIRRLPKPVIAMVAGY--AVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP--KKAREMWF 231 (269)
Q Consensus 156 ~l~~~i~~~~kP~Ia~v~G~--a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~--~~a~~l~l 231 (269)
..+..+... .|+|+.+-|+ |.||+..++.+||++|+++++.+++..+.+ +....|. -...+-.|
T Consensus 128 ~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~V-----------Ie~~~G~e~~~~~d~~l 195 (274)
T TIGR03133 128 RAILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPEV-----------IEQEAGVEEFDSRDRAL 195 (274)
T ss_pred HHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHHH-----------HHHhcCCCccCHHHhcc
Confidence 223344455 9999999999 899999999999999999999887743321 1222231 12233344
Q ss_pred cCCCCCHHHHHHcCccceecCC--CcHHHHHHHHH
Q 024304 232 LARFYTAEEAEKMGLVNTVVPV--SLFVAYLMSLT 264 (269)
Q Consensus 232 tg~~i~a~eA~~~GLv~~vv~~--e~l~~~a~~la 264 (269)
.-+.+.+......|++|.++++ +.+.+.+.++.
T Consensus 196 ~~~~lGG~~~~~sG~~D~~v~dd~~a~~~~~~~~l 230 (274)
T TIGR03133 196 VWRTTGGKHRFLSGDADVLVEDDVDAFRAAVIAAL 230 (274)
T ss_pred cccccchHhHhhcccceEEeCCHHHHHHHHHHHHH
Confidence 4556777778889999999987 45555554443
No 129
>PRK10949 protease 4; Provisional
Probab=97.95 E-value=0.00011 Score=72.58 Aligned_cols=87 Identities=21% Similarity=0.284 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccc
Q 024304 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (269)
Q Consensus 98 ~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~ 177 (269)
-.+.++.++++++.+|+.|++|||.-.++ .|..+..+ ..+.+.+..++...||+||..+.+ .
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~----gG~~~a~~-------------~eI~~ai~~fk~sGKpVvA~~~~~-~ 156 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF----AGADQPSM-------------QYIGKALREFRDSGKPVYAVGDSY-S 156 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCC----CCccHHHH-------------HHHHHHHHHHHHhCCeEEEEecCc-c
Confidence 44668999999999999999999998653 12222111 113344556667789999964444 5
Q ss_pred ccchhhhhcccEEEEeCCceEecCC
Q 024304 178 GGGHVLHMVCDLTIAADNAIFGQTG 202 (269)
Q Consensus 178 GgG~~lal~~D~~ia~~~a~f~~~~ 202 (269)
-+++-|+.+||-+++.+.+.++...
T Consensus 157 s~~YyLASaAD~I~l~P~G~v~~~G 181 (618)
T PRK10949 157 QGQYYLASFANKIYLSPQGVVDLHG 181 (618)
T ss_pred chhhhhhhhCCEEEECCCceEEEee
Confidence 6789999999999999998877643
No 130
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.90 E-value=0.00058 Score=61.17 Aligned_cols=160 Identities=20% Similarity=0.220 Sum_probs=102.5
Q ss_pred cCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304 78 GEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (269)
Q Consensus 78 ~~gv~~I~lnrp-~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (269)
++.-..|.-|++ -...++.....+.+.++++.+.+.. +-+|.|.-.|+ + -+.+ ....-... -....
T Consensus 118 ~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~-lPlV~l~dSgG-a-----RmqE----g~~sL~~~--ak~~~ 184 (285)
T TIGR00515 118 YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDN-CPLIIFSASGG-A-----RMQE----ALLSLMQM--AKTSA 184 (285)
T ss_pred CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHcC-CCEEEEEcCCC-c-----cccc----chhHHHhH--HHHHH
Confidence 444344444444 4667999999999999999987543 56777765553 2 1111 00000000 01222
Q ss_pred HHHHHhcCCCcEEEEEcCcccccchh-hhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCC
Q 024304 157 LQVQIRRLPKPVIAMVAGYAVGGGHV-LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235 (269)
Q Consensus 157 l~~~i~~~~kP~Ia~v~G~a~GgG~~-lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~ 235 (269)
...++.....|.|+.+-|+|.||+.. +++.+|++|+.+++.+++..+++ +...+|... .-+.
T Consensus 185 ~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprV-----------ie~ti~e~l------pe~~ 247 (285)
T TIGR00515 185 ALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRV-----------IEQTVREKL------PEGF 247 (285)
T ss_pred HHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHH-----------HHHHhcCcc------chhc
Confidence 33456667899999999999999754 67899999999999888744431 222223211 1112
Q ss_pred CCHHHHHHcCccceecCCCcHHHHHHHHHHhh
Q 024304 236 YTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQ 267 (269)
Q Consensus 236 i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~l 267 (269)
-+++-+.+.|+||.|+++.++.+...++...+
T Consensus 248 q~ae~~~~~G~vD~iv~~~~~r~~l~~~L~~~ 279 (285)
T TIGR00515 248 QTSEFLLEHGAIDMIVHRPEMKKTLASLLAKL 279 (285)
T ss_pred CCHHHHHhCCCCcEEECcHHHHHHHHHHHHHH
Confidence 35555778999999999999998888776643
No 131
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.88 E-value=0.00054 Score=59.83 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=94.5
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHh-hcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDA-RDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (269)
Q Consensus 78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~-~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (269)
++.-..|.=|+|.. .|+.+-...+.+.+..+ +++.++-+|.|.=.. .|-.|..-+... . ...+..
T Consensus 30 ~G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp--G~~~g~~aE~~G---------~-~~a~A~ 95 (238)
T TIGR03134 30 AGGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP--SQAYGRREELLG---------I-NQALAH 95 (238)
T ss_pred CCEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC--CCCCCHHHHHHH---------H-HHHHHH
Confidence 44444444445543 68878888888888885 455666666665443 244443333211 1 111233
Q ss_pred HHH---HHhcCCCcEEEEEcCcccccch-hhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHc
Q 024304 157 LQV---QIRRLPKPVIAMVAGYAVGGGH-VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL 232 (269)
Q Consensus 157 l~~---~i~~~~kP~Ia~v~G~a~GgG~-~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~lt 232 (269)
+.. .....+.|+|+.|-|.+.|||+ .+.+.+|.++|-+++.++. .++.+++..+-+-. ..+.++.-.
T Consensus 96 l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~v-------m~~e~aa~I~~~~~--~~~~e~a~~ 166 (238)
T TIGR03134 96 LAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVHV-------MDLESMARVTKRSV--EELEALAKS 166 (238)
T ss_pred HHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEEe-------cCHHHHHHHHccCH--hHHHHHHHh
Confidence 333 4445669999999999998886 4555689988887777654 44444444444333 233444332
Q ss_pred C--CCCCHHHHHHcCccceecCCCc
Q 024304 233 A--RFYTAEEAEKMGLVNTVVPVSL 255 (269)
Q Consensus 233 g--~~i~a~eA~~~GLv~~vv~~e~ 255 (269)
- ...+...+.++|+||.|+++.+
T Consensus 167 ~~~~a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 167 SPVFAPGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred hhhhccCHHHHHhCCCccEEeCCCC
Confidence 2 2467778999999999998644
No 132
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.86 E-value=0.00033 Score=59.23 Aligned_cols=99 Identities=24% Similarity=0.259 Sum_probs=70.5
Q ss_pred HHHHHHhcCCCcEEEEEcCcccccchhhhhcccEE--EEeCCceEecCCCCcccCCCChHHH-----------------H
Q 024304 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT--IAADNAIFGQTGPKVGSFDAGYGSS-----------------I 216 (269)
Q Consensus 156 ~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~--ia~~~a~f~~~~~~~Gl~p~~g~~~-----------------~ 216 (269)
.++..+...+.||...+-|.|...|..|++++|.. ++.+++++-...+. |.+-+. ++- .
T Consensus 76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~-a~Di~i~A~ei~~~~~~l~~i 153 (200)
T COG0740 76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQ-ASDIEIHAREILKIKERLNRI 153 (200)
T ss_pred HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccC-HHHHHHHHHHHHHHHHHHHHH
Confidence 44667888999999999999999999999999996 99999999887776 433222 121 1
Q ss_pred HHhhhCHHHHHH--HHHcCCCCCHHHHHHcCccceecCCCcH
Q 024304 217 MSRLVGPKKARE--MWFLARFYTAEEAEKMGLVNTVVPVSLF 256 (269)
Q Consensus 217 l~r~~G~~~a~~--l~ltg~~i~a~eA~~~GLv~~vv~~e~l 256 (269)
+....|...-+- ..-....++|+||+++||+|+|....+.
T Consensus 154 ~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~ 195 (200)
T COG0740 154 YAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREA 195 (200)
T ss_pred HHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceecccccc
Confidence 112223333321 2223456999999999999999876543
No 133
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.85 E-value=0.00084 Score=60.38 Aligned_cols=160 Identities=18% Similarity=0.237 Sum_probs=103.2
Q ss_pred cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (269)
Q Consensus 78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (269)
++.-..|.-|.+. ...+++....+.+.++++.+.... +=+|.|.-.|+ .-..+ +....... -....
T Consensus 119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~-lPlV~l~dsgG------armqE----gi~sL~~~--ak~~~ 185 (292)
T PRK05654 119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEK-CPLVIFSASGG------ARMQE----GLLSLMQM--AKTSA 185 (292)
T ss_pred CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHcC-CCEEEEEcCCC------cchhh----hhhHHHhH--HHHHH
Confidence 5544555555554 567999999999999999987653 66777765442 21111 00000000 01222
Q ss_pred HHHHHhcCCCcEEEEEcCcccccchh-hhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCC
Q 024304 157 LQVQIRRLPKPVIAMVAGYAVGGGHV-LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235 (269)
Q Consensus 157 l~~~i~~~~kP~Ia~v~G~a~GgG~~-lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~ 235 (269)
.+..+.....|.|+.+-|+|.||+.. +++.+|++|+.+++.+++..++ .+...++... .-+.
T Consensus 186 a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e~l------pe~~ 248 (292)
T PRK05654 186 ALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVREKL------PEGF 248 (292)
T ss_pred HHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhhhh------hhhh
Confidence 33455667899999999999999654 6778999999999988874442 1112222211 1112
Q ss_pred CCHHHHHHcCccceecCCCcHHHHHHHHHHhh
Q 024304 236 YTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQ 267 (269)
Q Consensus 236 i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~l 267 (269)
-+++-+.+.|+||.|+++.++.+...++.+.+
T Consensus 249 ~~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~ 280 (292)
T PRK05654 249 QRAEFLLEHGAIDMIVHRRELRDTLASLLALH 280 (292)
T ss_pred cCHHHHHhCCCCcEEECHHHHHHHHHHHHHHH
Confidence 35666778999999999999998888776654
No 134
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.81 E-value=0.00049 Score=61.95 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=93.9
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCC----CceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHH
Q 024304 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS----SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL 155 (269)
Q Consensus 80 gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~----~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~ 155 (269)
.+..+..+..-...++.....+.+..+++.+.++. -+-+|+|.-.|+ .-+.+ .. ..... ...+.
T Consensus 69 ~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGG------aRlqE---g~-~~L~~--~a~i~ 136 (301)
T PRK07189 69 PVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGG------VRLQE---AN-AGLAA--IAEIM 136 (301)
T ss_pred EEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCC------cCccc---hH-HHHHH--HHHHH
Confidence 45555565555678999999999999999997765 144555544332 22211 00 00000 01122
Q ss_pred HHHHHHhcCCCcEEEEEcCc--ccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH--HHHHHHHH
Q 024304 156 DLQVQIRRLPKPVIAMVAGY--AVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP--KKAREMWF 231 (269)
Q Consensus 156 ~l~~~i~~~~kP~Ia~v~G~--a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~--~~a~~l~l 231 (269)
..+..+... .|+|+.+-|+ |.||+..++.+||++|+++++.+++..+.+ +....|. -...+-.+
T Consensus 137 ~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP~V-----------Ie~~~G~e~~d~~d~~~ 204 (301)
T PRK07189 137 RAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGPEV-----------IEQEAGVEEFDSRDRAL 204 (301)
T ss_pred HHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCHHH-----------HHHhcCCcccCHHHhcc
Confidence 223344455 9999999999 999999999999999999999887743321 1111121 11122222
Q ss_pred cCCCCCHHHHHHcCccceecCCC--cHHHHHHH
Q 024304 232 LARFYTAEEAEKMGLVNTVVPVS--LFVAYLMS 262 (269)
Q Consensus 232 tg~~i~a~eA~~~GLv~~vv~~e--~l~~~a~~ 262 (269)
..+.+.+......|.+|.++++| .+.+.+..
T Consensus 205 vw~~lGG~h~~~sG~~D~~v~dd~~a~~~~~~~ 237 (301)
T PRK07189 205 VWRTTGGKHRYLSGLADALVDDDVAAFRAAALA 237 (301)
T ss_pred cccccCcceeeecccceEEeCCHHHHHHHHHHH
Confidence 22223333445689999999875 34444433
No 135
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.78 E-value=0.002 Score=57.86 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=99.0
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHH
Q 024304 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQV 159 (269)
Q Consensus 80 gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~ 159 (269)
.|+.+..+..-...++....-+.+.++++.+.+.. +-+|++...|+ +-+.+ +...-....+. ...+..
T Consensus 134 ~v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SGG------ARmQE----g~~sL~qmak~-saa~~~ 201 (296)
T CHL00174 134 PVALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASGG------ARMQE----GSLSLMQMAKI-SSALYD 201 (296)
T ss_pred EEEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCCC------ccccc----cchhhhhhHHH-HHHHHH
Confidence 45555555555668999999999999999987654 45666665442 22211 10000011110 001121
Q ss_pred HHhcCCCcEEEEEcCcccccchhh-hhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCH
Q 024304 160 QIRRLPKPVIAMVAGYAVGGGHVL-HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA 238 (269)
Q Consensus 160 ~i~~~~kP~Ia~v~G~a~GgG~~l-al~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a 238 (269)
....-..|.|+.+.|+|.||+... ++.||++|+.+++.+++..+++ ....+|.. +.-..=++
T Consensus 202 ~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrV-----------Ie~t~ge~------lpe~fq~a 264 (296)
T CHL00174 202 YQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRV-----------IEQTLNKT------VPEGSQAA 264 (296)
T ss_pred HHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHHH-----------HHHhcCCc------CCcccccH
Confidence 123567999999999999998764 7779999998889887643321 11112211 11112245
Q ss_pred HHHHHcCccceecCCCcHHHHHHHHHHh
Q 024304 239 EEAEKMGLVNTVVPVSLFVAYLMSLTKC 266 (269)
Q Consensus 239 ~eA~~~GLv~~vv~~e~l~~~a~~la~~ 266 (269)
+-.++.|+||.||+..+|.+...++.+-
T Consensus 265 e~l~~~G~vD~iV~r~~lr~~l~~ll~~ 292 (296)
T CHL00174 265 EYLFDKGLFDLIVPRNLLKGVLSELFQL 292 (296)
T ss_pred HHHHhCcCceEEEcHHHHHHHHHHHHHh
Confidence 5577899999999999999988887654
No 136
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0016 Score=60.95 Aligned_cols=154 Identities=20% Similarity=0.266 Sum_probs=109.2
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHH
Q 024304 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (269)
Q Consensus 78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (269)
+..|..|.++ +.+++.+...+.++++.++++.. .++||.=.-| .|. .....++
T Consensus 25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTP----GGl-----------------~~sm~~i 77 (436)
T COG1030 25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELDTP----GGL-----------------LDSMRQI 77 (436)
T ss_pred CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCC----Cch-----------------HHHHHHH
Confidence 5678888885 45999999999999999987763 3444443333 121 1125567
Q ss_pred HHHHhcCCCcEEEEEc---CcccccchhhhhcccEEEEeCCceEecCCCCccc---CCCCh-HHHH------HHhhh--C
Q 024304 158 QVQIRRLPKPVIAMVA---GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGS---FDAGY-GSSI------MSRLV--G 222 (269)
Q Consensus 158 ~~~i~~~~kP~Ia~v~---G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl---~p~~g-~~~~------l~r~~--G 222 (269)
.+.|.+.+.|++..|. +.|..+|.-++++||+..+++.+.++--.+-.+- ..... -... +++.- .
T Consensus 78 v~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN 157 (436)
T COG1030 78 VRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN 157 (436)
T ss_pred HHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence 8899999999999883 3699999999999999999999999875544332 11111 1111 11221 3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCccceecCC-CcHHH
Q 024304 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPV-SLFVA 258 (269)
Q Consensus 223 ~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~-e~l~~ 258 (269)
..-|.+++.....++++||++.|++|-+..+ .++..
T Consensus 158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~ 194 (436)
T COG1030 158 PTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLK 194 (436)
T ss_pred hHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHH
Confidence 5577888999999999999999999987643 44443
No 137
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.53 E-value=0.0024 Score=55.08 Aligned_cols=96 Identities=22% Similarity=0.293 Sum_probs=68.3
Q ss_pred HHHHHHhcCCCcEEEEEcCcccccchhhhhcccE--EEEeCCceEecCCCCcccCCCChHHH-----------------H
Q 024304 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS-----------------I 216 (269)
Q Consensus 156 ~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p~~g~~~-----------------~ 216 (269)
.++..+...+-+|...+.|.|.+.+.-|++++|- |++.+++.+-+..+..|.. +-... .
T Consensus 98 aIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~i 175 (222)
T PRK12552 98 AICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLEI 175 (222)
T ss_pred HHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777789999999999999999999995 9999999999888765532 11121 1
Q ss_pred HHhhhCHH--HHHHHHHcCCCCCHHHHHHcCccceecCC
Q 024304 217 MSRLVGPK--KAREMWFLARFYTAEEAEKMGLVNTVVPV 253 (269)
Q Consensus 217 l~r~~G~~--~a~~l~ltg~~i~a~eA~~~GLv~~vv~~ 253 (269)
+....|.. .-.+++-...-++|+||+++||+|+|+..
T Consensus 176 ya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 176 LSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred HHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence 12222322 22233334457999999999999999865
No 138
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.35 E-value=0.0019 Score=62.43 Aligned_cols=149 Identities=20% Similarity=0.253 Sum_probs=94.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccc--cccccccCCccchhhhhhhhHHHHH
Q 024304 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGG--DQALRTRDGYADYENFGRLNVLDLQ 158 (269)
Q Consensus 81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~--Dl~~~~~~~~~~~~~~~~~~~~~l~ 158 (269)
+.++..+..-...++.....+.+.++++.+.+..- -+|.|.-.| |. .+.+-. ....... .+..-+
T Consensus 59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~~-P~v~l~dsg------Ga~~r~~eg~----~~l~~~g--~i~~~~ 125 (493)
T PF01039_consen 59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENGL-PLVYLVDSG------GAFLRMQEGV----ESLMGMG--RIFRAI 125 (493)
T ss_dssp EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHTE-EEEEEEEES------SBCGGGGGHH----HHHHHHH--HHHHHH
T ss_pred EEEEEeccceecCCCCcccceeeehHHHHHHHcCC-CcEEecccc------ccccccchhh----hhhhhhH--HHHHHH
Confidence 34444444446678999999999999999987653 444443322 33 332211 0001111 122334
Q ss_pred HHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC-ceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCC
Q 024304 159 VQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237 (269)
Q Consensus 159 ~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~ 237 (269)
..+.. ..|+|+++.|+|.|||..+...||++|+.++ +.+++..+. .+. ..+|+.++
T Consensus 126 ~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP~-----------vv~-----------~~~Ge~~~ 182 (493)
T PF01039_consen 126 ARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGPR-----------VVE-----------SATGEEVD 182 (493)
T ss_dssp HHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTHH-----------HHH-----------HHHSSCTS
T ss_pred HHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEecccc-----------ccc-----------cccCcccc
Confidence 45556 9999999999999999999999999999988 888753221 111 24467777
Q ss_pred HHHH-------HHcCccceecCCC-cHHHHHHHHHH
Q 024304 238 AEEA-------EKMGLVNTVVPVS-LFVAYLMSLTK 265 (269)
Q Consensus 238 a~eA-------~~~GLv~~vv~~e-~l~~~a~~la~ 265 (269)
.++. ..-|.+|.++++| +..+.+.++..
T Consensus 183 ~~~lgG~~~h~~~sG~~d~v~~de~~a~~~ir~~ls 218 (493)
T PF01039_consen 183 SEELGGADVHAAKSGVVDYVVDDEEDALAQIRRLLS 218 (493)
T ss_dssp HHHHHBHHHHHHTSSSSSEEESSHHHHHHHHHHHHH
T ss_pred chhhhhhhhhcccCCCceEEEechHHHHHHHHHhhc
Confidence 7653 4679999999875 34455555543
No 139
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=97.27 E-value=0.0081 Score=52.89 Aligned_cols=158 Identities=18% Similarity=0.237 Sum_probs=106.7
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHH
Q 024304 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQV 159 (269)
Q Consensus 80 gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~ 159 (269)
.++...++..--..++..-.=+.+.++++.+-.+. +.+|+++..|+ .=..+ +.. .-...-.......
T Consensus 123 pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f~aSGG------ARMQE----g~l--SLMQMaktsaAl~ 189 (294)
T COG0777 123 PVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDK-LPLVLFSASGG------ARMQE----GIL--SLMQMAKTSAALK 189 (294)
T ss_pred EEEEEEEeccccccchhHHHHHHHHHHHHHHHHhC-CCEEEEecCcc------hhHhH----HHH--HHHHHHHHHHHHH
Confidence 45566666655667888888889999999987655 78899888774 11111 000 0000111233445
Q ss_pred HHhcCCCcEEEEEcCcccccc-hhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCH
Q 024304 160 QIRRLPKPVIAMVAGYAVGGG-HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA 238 (269)
Q Consensus 160 ~i~~~~kP~Ia~v~G~a~GgG-~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a 238 (269)
++.....|.|+.+.+++.||= ..+++..|+.||.+.|.+++..+++= -..++.+ |--..=++
T Consensus 190 ~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVI-----------EQTire~------LPegfQ~a 252 (294)
T COG0777 190 RLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVI-----------EQTIREK------LPEGFQTA 252 (294)
T ss_pred HHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhh-----------hhhhccc------CCcchhhH
Confidence 777789999999999999884 57999999999999999998766531 1111111 11112345
Q ss_pred HHHHHcCccceecCCCcHHHHHHHHHHhh
Q 024304 239 EEAEKMGLVNTVVPVSLFVAYLMSLTKCQ 267 (269)
Q Consensus 239 ~eA~~~GLv~~vv~~e~l~~~a~~la~~l 267 (269)
+-.++.|+||.||+..++......+...+
T Consensus 253 EfLlehG~iD~iv~R~elr~tla~ll~~~ 281 (294)
T COG0777 253 EFLLEHGMIDMIVHRDELRTTLASLLAKL 281 (294)
T ss_pred HHHHHcCCceeeecHHHHHHHHHHHHHHh
Confidence 55679999999999999988887776554
No 140
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.26 E-value=0.011 Score=57.35 Aligned_cols=167 Identities=16% Similarity=0.196 Sum_probs=103.2
Q ss_pred cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (269)
Q Consensus 78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (269)
++.-.-|.-|+|. ...++++...+...+.++.+.+. ++=+|.|.-.++ |..|.+.+. ... ......
T Consensus 313 ~G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G--~~~g~~~E~---------~g~-~~~~a~ 379 (512)
T TIGR01117 313 NGQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG--FLPGVNQEY---------GGI-IRHGAK 379 (512)
T ss_pred CCEEEEEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC--ccccHHHHH---------HHH-HHHHHH
Confidence 4433444444544 44689999999999999988654 456666655442 555533221 111 112345
Q ss_pred HHHHHhcCCCcEEEEEcCcccccchhhhhc-----ccEEEEeCCceEecCCCCcccCCCChHHHHHH-hhhC----HHHH
Q 024304 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMV-----CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMS-RLVG----PKKA 226 (269)
Q Consensus 157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~-----~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~-r~~G----~~~a 226 (269)
++..+.....|.|+.|-|.+.|||+ ++++ +|++++.+++.++.-.+. ++...+- +.+. ...+
T Consensus 380 ~~~a~~~~~vP~isvi~g~~~Gga~-~am~~~~~~~d~~~a~p~a~~~v~~pe-------~a~~i~~~~~l~~~~~~~~~ 451 (512)
T TIGR01117 380 VLYAYSEATVPKVTIITRKAYGGAY-LAMCSKHLGADQVYAWPTAEIAVMGPA-------GAANIIFRKDIKEAKDPAAT 451 (512)
T ss_pred HHHHHHhCCCCEEEEEcCCCchHHH-HHhccccCCCCEEEEcCCCeEeecCHH-------HHHHHHhhhhcccccCHHHH
Confidence 6667788999999999999988865 4443 999999999888763332 2222222 1111 1111
Q ss_pred H-HHH--HcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHH
Q 024304 227 R-EMW--FLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTK 265 (269)
Q Consensus 227 ~-~l~--ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~ 265 (269)
+ +.+ ..-+..++..+.+.|+||.|+++.+......+..+
T Consensus 452 ~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~ 493 (512)
T TIGR01117 452 RKQKIAEYREEFANPYKAAARGYVDDVIEPKQTRPKIVNALA 493 (512)
T ss_pred HHHHHHHHHHhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHH
Confidence 1 111 12235578899999999999999887766555443
No 141
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.56 E-value=0.077 Score=51.57 Aligned_cols=154 Identities=16% Similarity=0.199 Sum_probs=86.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHH
Q 024304 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (269)
Q Consensus 81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (269)
|..+..+..-+..++.....+.+.++++.+.+.. +-+|.|.-.|+ + .+.+-. ... ....+ ..... .
T Consensus 84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgG-a-----rm~eg~-~~l---~~~~~--~~~~~-~ 149 (512)
T TIGR01117 84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGG-A-----RIQEAV-DAL---KGYGD--IFYRN-T 149 (512)
T ss_pred EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCC-C-----Cccccc-hhh---hhHHH--HHHHH-H
Confidence 4444444434567999999999999999997765 34555543332 2 221100 000 00111 11111 2
Q ss_pred HhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCc-eEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHH
Q 024304 161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA-IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239 (269)
Q Consensus 161 i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a-~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~ 239 (269)
...-..|.|+++-|+|.||+......||++|+.+++ .+++..+ ..+....|.. .+.+.+.+.
T Consensus 150 ~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~aGP-----------~vv~~~~Ge~------v~~e~lGGa 212 (512)
T TIGR01117 150 IASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITGP-----------QVIKTVTGEE------VTAEQLGGA 212 (512)
T ss_pred HHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEecCh-----------HHHHhhcCcc------cchhhcchH
Confidence 223458999999999999998887899999999874 4554211 1111112221 122334344
Q ss_pred HHH--HcCccceecCC-CcHHHHHHHHHH
Q 024304 240 EAE--KMGLVNTVVPV-SLFVAYLMSLTK 265 (269)
Q Consensus 240 eA~--~~GLv~~vv~~-e~l~~~a~~la~ 265 (269)
+.+ .-|.+|.++++ ++..+.++++..
T Consensus 213 ~~h~~~sGv~d~~~~de~ea~~~~r~~ls 241 (512)
T TIGR01117 213 MAHNSVSGVAHFIAEDDDDCIMLIRRLLS 241 (512)
T ss_pred HHhccccceeEEecCChHHHHHHHHHHHH
Confidence 433 47999988865 455555555543
No 142
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=96.44 E-value=0.0057 Score=54.31 Aligned_cols=86 Identities=26% Similarity=0.410 Sum_probs=63.0
Q ss_pred HHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCC
Q 024304 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237 (269)
Q Consensus 158 ~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~ 237 (269)
+..+..++.|+||.|=|---+||.--...+|.+.+-++++|+. +-|.+. +..|-+ ...++.+. -..-.|+
T Consensus 181 L~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~-AsILWk--D~~ka~eA-Ae~mkit 250 (317)
T COG0825 181 LREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGC-ASILWK--DASKAKEA-AEAMKIT 250 (317)
T ss_pred HHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhh-hhhhhc--ChhhhHHH-HHHcCCC
Confidence 4577799999999999998777776666789999999999975 234443 444433 12233332 2334899
Q ss_pred HHHHHHcCccceecCC
Q 024304 238 AEEAEKMGLVNTVVPV 253 (269)
Q Consensus 238 a~eA~~~GLv~~vv~~ 253 (269)
+++.+++|+||.|+|.
T Consensus 251 a~dLk~lgiID~II~E 266 (317)
T COG0825 251 AHDLKELGIIDGIIPE 266 (317)
T ss_pred HHHHHhCCCcceeccC
Confidence 9999999999999984
No 143
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.41 E-value=0.19 Score=49.49 Aligned_cols=113 Identities=22% Similarity=0.303 Sum_probs=69.1
Q ss_pred cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (269)
Q Consensus 78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (269)
++.-..|.-|.+. +..+++....+.+.++++.+.+.. +-+|.|.-.++ ++-.+ ..+.+. ...... .+..
T Consensus 127 ~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSgG-arl~~-q~e~~~-----~~~~~g--~if~ 196 (569)
T PLN02820 127 HGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSGG-ANLPR-QAEVFP-----DRDHFG--RIFY 196 (569)
T ss_pred CCEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCC-cCCcc-cccccc-----hHhHHH--HHHH
Confidence 3333333444443 567999999999999999987664 44555543332 32211 000000 000000 1222
Q ss_pred HHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC-ceEec
Q 024304 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQ 200 (269)
Q Consensus 157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~ 200 (269)
-...+.....|.|+.+-|.|.|||..+..+||++|++++ +.+.+
T Consensus 197 ~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~ 241 (569)
T PLN02820 197 NQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL 241 (569)
T ss_pred HHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe
Confidence 223455567999999999999999999999999999965 65554
No 144
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=94.58 E-value=0.38 Score=46.63 Aligned_cols=166 Identities=19% Similarity=0.223 Sum_probs=98.4
Q ss_pred cCCEEEEEEcCCCCC-CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304 78 GEGIAKITINRPDRR-NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (269)
Q Consensus 78 ~~gv~~I~lnrp~~~-Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (269)
++.-.-|.-|+|... .+++++-.....+.++.++. -++=+|.|.=.. .|..|-+-+. ... ......
T Consensus 292 ~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dtp--Gf~~g~~~E~---------~g~-~~~ga~ 358 (493)
T PF01039_consen 292 GGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDTP--GFMPGPEAER---------AGI-IRAGAR 358 (493)
T ss_dssp TTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEEC--EB--SHHHHH---------TTH-HHHHHH
T ss_pred CCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeecc--cccccchhhh---------cch-HHHHHH
Confidence 555455555666532 37999999999999998876 456677776443 4665543322 111 123456
Q ss_pred HHHHHhcCCCcEEEEEcCcccccchhhhhcc----cEEEEeCCceEecCCCCcccCCCChHHHHHHh-hh------C--H
Q 024304 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC----DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR-LV------G--P 223 (269)
Q Consensus 157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~----D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r-~~------G--~ 223 (269)
+...+..++.|.|..|-|.+.|||....... |+++|.+++.++.- ++.++...+-+ .. + .
T Consensus 359 ~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm-------~~e~a~~i~~~~~~~~~~~~~~~~ 431 (493)
T PF01039_consen 359 LLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVM-------GPEGAASILYRDELEAAEAEGADP 431 (493)
T ss_dssp HHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEESS--------HHHHHHHHTHHHHHHSCHCCHSH
T ss_pred HHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeeec-------Chhhhheeeehhhhhhhhcccchh
Confidence 7888999999999999999999887544444 89988888888653 33333333221 11 1 0
Q ss_pred H--HHHHHHH-cCCCCCHHHHHHcCccceecCCCcHHHHHHHH
Q 024304 224 K--KAREMWF-LARFYTAEEAEKMGLVNTVVPVSLFVAYLMSL 263 (269)
Q Consensus 224 ~--~a~~l~l-tg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~l 263 (269)
. ....+-- .-...++..+...|++|.|+++.+........
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~ 474 (493)
T PF01039_consen 432 EAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAA 474 (493)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHH
Confidence 0 1111111 11226889999999999999998877655443
No 145
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=94.15 E-value=0.24 Score=47.87 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=69.8
Q ss_pred cCCEEEEEEcC-CCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304 78 GEGIAKITINR-PDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (269)
Q Consensus 78 ~~gv~~I~lnr-p~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (269)
++.-+.|..|. +.+..++.+-..+.+.++.+.+.++..-.+.+..+.|. .+.+ .........+ ++.
T Consensus 89 ~Gr~~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGa-------ri~~----~v~~l~g~g~--iF~ 155 (526)
T COG4799 89 NGRKVFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGA-------RIQE----GVPSLAGYGR--IFY 155 (526)
T ss_pred CCeEEEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEccccc-------cccc----CccccccchH--HHH
Confidence 33334444443 44667888888888989898888776555555555442 2211 0111111111 222
Q ss_pred HHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC-ceEec
Q 024304 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQ 200 (269)
Q Consensus 157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~ 200 (269)
-+.++... .|.|++|-|.|.|||+-+-..||++|+.++ +.+.+
T Consensus 156 ~~a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mfl 199 (526)
T COG4799 156 RNARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFL 199 (526)
T ss_pred HHHHhccC-CCEEEEEEecCcccccccccccceEEEEcCCccEEe
Confidence 23355555 999999999999999999999999999988 44433
No 146
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.49 Score=41.49 Aligned_cols=136 Identities=19% Similarity=0.212 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (269)
Q Consensus 94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~ 173 (269)
.++.++-+.+...|-.++.++.-|=|.+.=+.| |+++.. ...++..+..+.-||-...-
T Consensus 100 ~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSP-----GG~vta----------------glAIYDtMq~ik~~V~Tic~ 158 (275)
T KOG0840|consen 100 PIDDDVANLVIAQLLYLDSEDPKKPIYLYINSP-----GGSVTA----------------GLAIYDTMQYIKPDVSTICV 158 (275)
T ss_pred cCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCC-----CCccch----------------hhhHHHHHHhhCCCceeeeh
Confidence 377788888888887777666667666655443 444321 11233344445555555556
Q ss_pred Ccccccchhhhhcc--cEEEEeCCceEecCCCCcccCCCChHHHHHH-----------------hhhCHH--HHHHHHHc
Q 024304 174 GYAVGGGHVLHMVC--DLTIAADNAIFGQTGPKVGSFDAGYGSSIMS-----------------RLVGPK--KAREMWFL 232 (269)
Q Consensus 174 G~a~GgG~~lal~~--D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~-----------------r~~G~~--~a~~l~lt 232 (269)
|.|.+-|.-|..+. -.|++-+++++-...+.-| ..+...-... +..|.. ...+-+-.
T Consensus 159 G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gg--a~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dR 236 (275)
T KOG0840|consen 159 GLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGG--AGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDR 236 (275)
T ss_pred hhHHhHHHHHHhcCCCcceeecCCceeEEeccCCC--cCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcc
Confidence 77777666554433 3566666666655444444 1222222111 111211 11111233
Q ss_pred CCCCCHHHHHHcCccceecC
Q 024304 233 ARFYTAEEAEKMGLVNTVVP 252 (269)
Q Consensus 233 g~~i~a~eA~~~GLv~~vv~ 252 (269)
-+.++++||+++||+|+|+.
T Consensus 237 d~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 237 DRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred cccCCHHHHHHhcchhhhhc
Confidence 56799999999999999975
No 147
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=93.65 E-value=3 Score=41.20 Aligned_cols=148 Identities=10% Similarity=0.075 Sum_probs=94.1
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEE
Q 024304 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (269)
Q Consensus 93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v 172 (269)
.+++.+-.....+.++.++. -++-+|-|.=.. .|..|.+.+.- .. ......+...+.....|.|+.|
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~p--Gf~~G~~~E~~---------G~-~~~~a~l~~A~a~~~VP~isvi 446 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNIT--GFMVGSRSEAS---------GI-AKAGAKMVMAVACAKVPKITII 446 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECC--CCCCCHHHHHh---------hH-HHHHHHHHHHHHhCCCCEEEEE
Confidence 56888888888888888765 456666665443 37666554431 11 2235567778889999999999
Q ss_pred cCcccccchhhhh----cccEEEEeCCceEecCCCCcccCCCChHHHHHHhh-h------------CHHHH-HHH--HHc
Q 024304 173 AGYAVGGGHVLHM----VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-V------------GPKKA-REM--WFL 232 (269)
Q Consensus 173 ~G~a~GgG~~lal----~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~-~------------G~~~a-~~l--~lt 232 (269)
-|.+.|+|..-.+ ..|++++.+++.++. .++.++...+.+. + -...+ ++. -..
T Consensus 447 ~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~v-------mg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (569)
T PLN02820 447 VGGSFGAGNYGMCGRAYSPNFLFMWPNARIGV-------MGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAY 519 (569)
T ss_pred ECCcchHHHHHhcCcCCCCCEEEECCCCeEEe-------cCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHH
Confidence 9999998764333 568888877777654 4444444444321 1 11111 111 112
Q ss_pred CCCCCHHHHHHcCccceecCCCcHHHHH
Q 024304 233 ARFYTAEEAEKMGLVNTVVPVSLFVAYL 260 (269)
Q Consensus 233 g~~i~a~eA~~~GLv~~vv~~e~l~~~a 260 (269)
-+..++-.|...|++|.|+++.+-....
T Consensus 520 ~~~~~p~~aa~~~~vD~VIdP~dTR~~l 547 (569)
T PLN02820 520 EREANPYYSTARLWDDGVIDPADTRRVL 547 (569)
T ss_pred HHhCCHHHHHHcCCcCcccCHHHHHHHH
Confidence 2356778888999999999886654433
No 148
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=91.44 E-value=0.46 Score=43.13 Aligned_cols=74 Identities=27% Similarity=0.433 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhcCC---CceEEEE-EcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304 98 HTVKELIRAFNDARDDS---SVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (269)
Q Consensus 98 ~~~~~L~~al~~~~~d~---~~~vvVl-~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~ 173 (269)
....++.++++.+...+ .+.+||| +|.|+ .++..-++-..+.+.|..++.|||++|
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs-------------------~eDL~~FN~e~varai~~~~~PvisaI- 114 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIIIRGGGS-------------------IEDLWAFNDEEVARAIAASPIPVISAI- 114 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEecCCCC-------------------hHHhcccChHHHHHHHHhCCCCEEEec-
Confidence 34567888888887654 5667776 55432 111223344567889999999999954
Q ss_pred Ccccccchh-----hhhcccEEEEeCCce
Q 024304 174 GYAVGGGHV-----LHMVCDLTIAADNAI 197 (269)
Q Consensus 174 G~a~GgG~~-----lal~~D~~ia~~~a~ 197 (269)
|++ .=+.+|+|..|+++.
T Consensus 115 ------GHe~D~ti~D~vAd~ra~TPtaa 137 (319)
T PF02601_consen 115 ------GHETDFTIADFVADLRAPTPTAA 137 (319)
T ss_pred ------CCCCCchHHHHHHHhhCCCHHHH
Confidence 554 345778888877654
No 149
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=90.47 E-value=0.61 Score=44.44 Aligned_cols=73 Identities=25% Similarity=0.371 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEE-EcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcc
Q 024304 98 HTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYA 176 (269)
Q Consensus 98 ~~~~~L~~al~~~~~d~~~~vvVl-~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a 176 (269)
+...++..+++.+...+++.+||| +|.|+ .++..-++-..+.+.++.+|.|||++|
T Consensus 170 ~a~~~i~~al~~~~~~~~~dviii~RGGGs-------------------~eDL~~Fn~e~~~rai~~~~~Pvis~i---- 226 (432)
T TIGR00237 170 GAVQSIVESIELANTKNECDVLIVGRGGGS-------------------LEDLWSFNDEKVARAIFLSKIPIISAV---- 226 (432)
T ss_pred cHHHHHHHHHHHhhcCCCCCEEEEecCCCC-------------------HHHhhhcCcHHHHHHHHcCCCCEEEec----
Confidence 445678888888877666777777 44332 112223344567889999999999954
Q ss_pred cccchh-----hhhcccEEEEeCCc
Q 024304 177 VGGGHV-----LHMVCDLTIAADNA 196 (269)
Q Consensus 177 ~GgG~~-----lal~~D~~ia~~~a 196 (269)
|+| .=+.+|.|..|+++
T Consensus 227 ---GHe~D~ti~D~vAd~ra~TPta 248 (432)
T TIGR00237 227 ---GHETDFTISDFVADLRAPTPSA 248 (432)
T ss_pred ---CcCCCccHHHHhhhccCCCcHH
Confidence 554 34578888888764
No 150
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=88.95 E-value=1.2 Score=39.69 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccc
Q 024304 103 LIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (269)
Q Consensus 103 L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~ 177 (269)
+.++|+.+++||+.++||+-|+-+ ++-++ . ..++... ....||+|+.+.|.+.
T Consensus 188 fid~L~~fe~Dp~T~~ivmiGEiG------G~aEe----------~-----AA~~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 188 FIDALEMFEADPETEAIVMIGEIG------GPAEE----------E-----AAEYIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHHHHHHhcCccccEEEEEecCC------CcHHH----------H-----HHHHHHH-hccCCCEEEEEeccCC
Confidence 457889999999999999999842 11111 1 1223333 3345999999999865
No 151
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=88.52 E-value=11 Score=36.65 Aligned_cols=163 Identities=17% Similarity=0.190 Sum_probs=101.1
Q ss_pred cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (269)
Q Consensus 78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (269)
++.-.=|.=|.|. ...+|+.+-...-.+.+ ++.+.-++-.|.|.=.. .|..|-|.+.- +. ...-..
T Consensus 322 ~G~pVGiIANqp~~~~G~l~~~sa~KaArFI-~~cd~~~iPlv~L~d~p--GFm~G~~~E~~---------gi-ik~Gak 388 (526)
T COG4799 322 DGRPVGIIANQPRHLGGVLDIDSADKAARFI-RLCDAFNIPLVFLVDTP--GFMPGTDQEYG---------GI-IKHGAK 388 (526)
T ss_pred CCEEEEEEecCccccccccchHHHHHHHHHH-HhhhccCCCeEEEeCCC--CCCCChhHHhC---------hH-HHhhhH
Confidence 4433334445554 44599999999888888 45555667777776543 59989776541 11 122456
Q ss_pred HHHHHhcCCCcEEEEEcCcccccchhh----hhcccEEEEeCCceEecCCCCcccCCCChHHHHHHh-hhC-HHH-H--H
Q 024304 157 LQVQIRRLPKPVIAMVAGYAVGGGHVL----HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR-LVG-PKK-A--R 227 (269)
Q Consensus 157 l~~~i~~~~kP~Ia~v~G~a~GgG~~l----al~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r-~~G-~~~-a--~ 227 (269)
+...+.....|.|..+-|-+.|||... ++.+|+.+|.+++.++.- -+.++...+.+ .+. ..+ . +
T Consensus 389 l~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~iaVM-------G~egAv~i~~~k~l~~~~~~~~~~ 461 (526)
T COG4799 389 LLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIAVM-------GPEGAVSILYRKELAAAERPEERE 461 (526)
T ss_pred HHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEecCcceeeec-------CHHHHHHHHHHHHhhcccCchhHH
Confidence 778889999999999999999999643 345777777777777652 22333333322 211 000 0 0
Q ss_pred ----H-H--HHcCCCCCHHHHHHcCccceecCCCcHHHHH
Q 024304 228 ----E-M--WFLARFYTAEEAEKMGLVNTVVPVSLFVAYL 260 (269)
Q Consensus 228 ----~-l--~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a 260 (269)
. + -+.-+..+.--|.+.|++|.|.++.+.....
T Consensus 462 ~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR~~L 501 (526)
T COG4799 462 ALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDPADTRAVL 501 (526)
T ss_pred HHHHHHHHHHHHHhccchHHHHHhCCCCcccCHHHHHHHH
Confidence 0 1 1222335666778899999999886554443
No 152
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=87.70 E-value=1.2 Score=42.49 Aligned_cols=73 Identities=26% Similarity=0.361 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEE-EcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcc
Q 024304 98 HTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYA 176 (269)
Q Consensus 98 ~~~~~L~~al~~~~~d~~~~vvVl-~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a 176 (269)
....++.++++.+.... +.+||| +|.|+ .++..-++-..+.+.++.++.|||++|
T Consensus 176 ~A~~~i~~al~~~~~~~-~Dviii~RGGGS-------------------~eDL~~Fn~e~v~~ai~~~~~Pvis~I---- 231 (438)
T PRK00286 176 GAAASIVAAIERANARG-EDVLIVARGGGS-------------------LEDLWAFNDEAVARAIAASRIPVISAV---- 231 (438)
T ss_pred cHHHHHHHHHHHhcCCC-CCEEEEecCCCC-------------------HHHhhccCcHHHHHHHHcCCCCEEEec----
Confidence 34567788888776543 556655 44332 112223344567889999999999954
Q ss_pred cccchh-----hhhcccEEEEeCCce
Q 024304 177 VGGGHV-----LHMVCDLTIAADNAI 197 (269)
Q Consensus 177 ~GgG~~-----lal~~D~~ia~~~a~ 197 (269)
|+| .=+.+|.|..|+++.
T Consensus 232 ---GHE~D~tl~D~vAd~ra~TPtaa 254 (438)
T PRK00286 232 ---GHETDFTIADFVADLRAPTPTAA 254 (438)
T ss_pred ---cCCCCccHHHHhhhccCCChHHH
Confidence 554 345788888887653
No 153
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=86.27 E-value=1.6 Score=41.47 Aligned_cols=72 Identities=29% Similarity=0.421 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEE-cCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccc
Q 024304 99 TVKELIRAFNDARDDSSVGVIILT-GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (269)
Q Consensus 99 ~~~~L~~al~~~~~d~~~~vvVl~-g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~ 177 (269)
...++.++++.+.+.+++.++|+. |.|+ -++..-++-..+.+.++.+..|+|++|
T Consensus 177 A~~eIv~aI~~an~~~~~DvlIVaRGGGS-------------------iEDLW~FNdE~vaRAi~~s~iPvISAV----- 232 (440)
T COG1570 177 AAEEIVEAIERANQRGDVDVLIVARGGGS-------------------IEDLWAFNDEIVARAIAASRIPVISAV----- 232 (440)
T ss_pred cHHHHHHHHHHhhccCCCCEEEEecCcch-------------------HHHHhccChHHHHHHHHhCCCCeEeec-----
Confidence 455777777777777777777763 3221 111222333457789999999999966
Q ss_pred ccchh-----hhhcccEEEEeCCc
Q 024304 178 GGGHV-----LHMVCDLTIAADNA 196 (269)
Q Consensus 178 GgG~~-----lal~~D~~ia~~~a 196 (269)
|+| .=+.+|+|-.|+++
T Consensus 233 --GHEtD~tL~DfVAD~RApTPTa 254 (440)
T COG1570 233 --GHETDFTLADFVADLRAPTPTA 254 (440)
T ss_pred --ccCCCccHHHhhhhccCCCchH
Confidence 443 23467777777654
No 154
>PLN02522 ATP citrate (pro-S)-lyase
Probab=78.53 E-value=5.4 Score=39.65 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=37.1
Q ss_pred HHHHHHHHhhcCCCceEEEEEcC-CCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccc
Q 024304 102 ELIRAFNDARDDSSVGVIILTGK-GTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (269)
Q Consensus 102 ~L~~al~~~~~d~~~~vvVl~g~-g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~ 177 (269)
.+.+.|+.+++||+.++|++.++ |.+ | .. .+.+..+... ..||||+.+-|.+.
T Consensus 209 ~~~D~L~~~~~Dp~Tk~IvlygEiGg~------~-----------e~-----~f~ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 209 TLSDHVLRFNNIPQIKMIVVLGELGGR------D-----------EY-----SLVEALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred CHHHHHHHHhcCCCCCEEEEEEecCch------h-----------HH-----HHHHHHHHhc-CCCCEEEEeccCCC
Confidence 35677888999999999999998 631 0 11 1223333333 78999999999976
No 155
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=78.25 E-value=6.3 Score=31.41 Aligned_cols=52 Identities=25% Similarity=0.386 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcc
Q 024304 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYA 176 (269)
Q Consensus 102 ~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a 176 (269)
.+.+.++.+.+||++++|++.-++-+ .| ..+.+..+..... ||||+..-|..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~~---d~-------------------~~f~~~~~~a~~~-KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGIG---DG-------------------RRFLEAARRAARR-KPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--S----H-------------------HHHHHHHHHHCCC-S-EEEEE----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCCC---CH-------------------HHHHHHHHHHhcC-CCEEEEeCCCc
Confidence 46677899999999999999987621 00 1244555566556 99999999973
No 156
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=77.69 E-value=6 Score=36.13 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccc
Q 024304 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (269)
Q Consensus 102 ~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~ 177 (269)
.+.+.|+.+++||+.++|++.+++. | +- +.+. ..+... ....||+|+.+-|...
T Consensus 211 ~~~D~L~~~~~Dp~T~~Ivl~~E~g-----G-~~----------e~~a-----a~fi~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 211 NFIDCLKLFLNDPETEGIILIGEIG-----G-TA----------EEEA-----AEWIKN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred CHHHHHHHHhhCCCccEEEEEEecC-----C-ch----------hHHH-----HHHHHh-hcCCCcEEEEEecCCC
Confidence 4667788999999999999999863 1 11 0111 111222 2468999999999864
No 157
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=68.04 E-value=7.3 Score=36.86 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=57.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEE--EcCCCCceeccccccccccC--Cccch-hhhhhhhHH
Q 024304 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQALRTRD--GYADY-ENFGRLNVL 155 (269)
Q Consensus 81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl--~g~g~~~Fc~G~Dl~~~~~~--~~~~~-~~~~~~~~~ 155 (269)
|+.|.|.. |+.....+|..++..++++. ++++|| ++++++......++..+--. ..... .........
T Consensus 205 IGyI~I~~------F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~ 277 (406)
T COG0793 205 IGYIRIPS------FGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVY 277 (406)
T ss_pred EEEEEecc------cccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeec
Confidence 88888854 77788888999999999887 888888 66665555555554432110 00000 000000000
Q ss_pred HHHHHHhcCCCcEEEEEcCcccccchhhhh
Q 024304 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185 (269)
Q Consensus 156 ~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal 185 (269)
.-...-...++|+|.+||+....++=.++-
T Consensus 278 ~~~~~~~~~~~PlvvLvn~~SASAsEI~ag 307 (406)
T COG0793 278 FSASGEALYDGPLVVLVNEGSASASEIFAG 307 (406)
T ss_pred cccccccCCCCCEEEEECCCCccHHHHHHH
Confidence 000000046899999999998777754444
No 158
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=66.45 E-value=13 Score=33.66 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=35.4
Q ss_pred HHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccc
Q 024304 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (269)
Q Consensus 102 ~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~ 177 (269)
.+.+.|+.+.+||+.++|++..++. |.++.. ...+.... ...||+|+..-|..-
T Consensus 192 ~~~d~L~yl~~Dp~T~~I~ly~E~~-----G~~~~d----------------~~~f~~aa-~~~KPVV~lk~Grs~ 245 (300)
T PLN00125 192 NFVDCLEKFVKDPQTEGIILIGEIG-----GTAEED----------------AAAFIKES-GTEKPVVAFIAGLTA 245 (300)
T ss_pred CHHHHHHHHhhCCCCcEEEEEeccC-----CchHHH----------------HHHHHHHh-cCCCCEEEEEecCCC
Confidence 4567788888999999999998762 221111 11222222 238999999999863
No 159
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=64.82 E-value=1.3e+02 Score=28.90 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=94.7
Q ss_pred EEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHH
Q 024304 82 AKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (269)
Q Consensus 82 ~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (269)
.=|.-|+|+ ....|..+.-....+.++.+. .-.+-.|.|...++ |--|.+++...- . ..-..+...
T Consensus 351 VgIvgnn~kf~~G~L~s~sa~KgarfIe~c~-q~~IPLi~l~ni~G--fm~g~~~e~~gI---------a-K~gAklv~a 417 (536)
T KOG0540|consen 351 VGIVGNNPKFAGGVLFSESAVKGARFIELCD-QRNIPLIFLQNITG--FMVGRAAEAGGI---------A-KHGAKLVYA 417 (536)
T ss_pred EEEeccCchhcccccchhhhhhhHHHHHHHH-hcCCcEEEEEccCC--ccccchhhhhch---------h-hhhhhhhhh
Confidence 335556665 335677677777777676655 44577777777663 988988765321 1 112345667
Q ss_pred HhcCCCcEEEEEcCcccccchh---hhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhh-------hCHHHHHHHH
Q 024304 161 IRRLPKPVIAMVAGYAVGGGHV---LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-------VGPKKAREMW 230 (269)
Q Consensus 161 i~~~~kP~Ia~v~G~a~GgG~~---lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~-------~G~~~a~~l~ 230 (269)
......|-|..+-|.+.||-.. -++.-|+.++.++|.++.-..+. +...+.+. .+. ...|.+
T Consensus 418 ~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~~-------a~~Vi~q~~~e~a~~~~~-~~~E~f 489 (536)
T KOG0540|consen 418 VACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGGKQ-------AANVIFQITLEKAVALKA-PYIEKF 489 (536)
T ss_pred hhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeeccccc-------hhhhhhhhhhhhhhhhcc-hHHHHh
Confidence 7778889999999999996544 66788999999999988744321 12222221 111 112222
Q ss_pred HcCCCCCHHHHHHcCccceecCCCcHH
Q 024304 231 FLARFYTAEEAEKMGLVNTVVPVSLFV 257 (269)
Q Consensus 231 ltg~~i~a~eA~~~GLv~~vv~~e~l~ 257 (269)
|.++. |...||+|.|+++.+..
T Consensus 490 --~npy~---a~~Rg~~D~II~p~~tR 511 (536)
T KOG0540|consen 490 --GNPYY---AAARGWDDGIIDPSDTR 511 (536)
T ss_pred --cCccH---HHHhhccccccChhHhh
Confidence 55554 45789999999875543
No 160
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=61.55 E-value=20 Score=31.48 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHH--HHhcCCCcEEEEEcCcc
Q 024304 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQV--QIRRLPKPVIAMVAGYA 176 (269)
Q Consensus 102 ~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~--~i~~~~kP~Ia~v~G~a 176 (269)
.+.++|+.+-+|++.+.+|+-|+-+ | .- +++.+ +++. .-..-+|||++++.|..
T Consensus 218 ~FID~L~vFl~D~~t~GIiliGEIG-----G-~A----------Ee~AA-----~flk~~nSg~~~kPVvsFIAG~t 273 (329)
T KOG1255|consen 218 NFIDCLEVFLEDPETEGIILIGEIG-----G-SA----------EEEAA-----EFLKEYNSGSTAKPVVSFIAGVT 273 (329)
T ss_pred cHHHHHHHHhcCcccceEEEEeccC-----C-hh----------hHHHH-----HHHHHhccCCCCCceeEEeeccc
Confidence 5778899999999999999999763 1 11 11111 1121 23357899999999874
No 161
>smart00250 PLEC Plectin repeat.
Probab=60.81 E-value=7.2 Score=23.60 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=16.8
Q ss_pred cCCCCCHHHHHHcCccce
Q 024304 232 LARFYTAEEAEKMGLVNT 249 (269)
Q Consensus 232 tg~~i~a~eA~~~GLv~~ 249 (269)
+|++++-.||.+.||++.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 889999999999999985
No 162
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=58.01 E-value=27 Score=28.37 Aligned_cols=57 Identities=28% Similarity=0.304 Sum_probs=36.2
Q ss_pred HHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHh-----cCCCcEEEEEcCcc
Q 024304 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIR-----RLPKPVIAMVAGYA 176 (269)
Q Consensus 102 ~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~-----~~~kP~Ia~v~G~a 176 (269)
...++|..+.+||++++|+|-+.++..-| +.. ...+...+. ..+||+|+.|-|-.
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~----------------~~~----A~~l~~a~~~~~~~~~~~pvVa~v~GT~ 119 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGGIGSC----------------EDP----AAGLIPAIKEAKAEGRKKPVVARVCGTN 119 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESSSSSH----------------HHH----HHHHHHHHSHCTHTTT-SEEEEEEESTT
T ss_pred HHHHHHHHHhcCCCccEEEEEeccccCch----------------HHH----HHHHHHHHHhccccCCCCcEEEEeeeec
Confidence 45566888889999999999987741111 111 122333332 36799999999875
Q ss_pred cc
Q 024304 177 VG 178 (269)
Q Consensus 177 ~G 178 (269)
.-
T Consensus 120 ~d 121 (153)
T PF00549_consen 120 AD 121 (153)
T ss_dssp CH
T ss_pred CC
Confidence 44
No 163
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=55.99 E-value=1.4e+02 Score=26.08 Aligned_cols=138 Identities=15% Similarity=0.143 Sum_probs=80.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCceEEEE--EcCCCCceeccccccccccCCccchhhhhhh-----hHHHHHHHHhcC
Q 024304 92 RNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQALRTRDGYADYENFGRL-----NVLDLQVQIRRL 164 (269)
Q Consensus 92 ~Nal~~~~~~~L~~al~~~~~d~~~~vvVl--~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~-----~~~~l~~~i~~~ 164 (269)
...+..+.-..|.+++.++-++..-+-||+ -..+ ..+...++..-. ...+-+..-+..
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~s---------------Qa~grreEllGi~~alAhla~a~a~AR~~ 104 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPS---------------QAYGRREELLGINQALAHLAKAYALARLA 104 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCc---------------cccchHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 477888888888877776653333333333 2222 112222332211 123444566678
Q ss_pred CCcEEEEEcCcccccch-hhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCC--CCHHHH
Q 024304 165 PKPVIAMVAGYAVGGGH-VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF--YTAEEA 241 (269)
Q Consensus 165 ~kP~Ia~v~G~a~GgG~-~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~--i~a~eA 241 (269)
.-|+|++|.|.+++||| .-.+.+|-.||=+++.. -..+-. +..+..+ .....-.++.-+--. ++.+--
T Consensus 105 GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~ga~i-------~vM~~~-s~ARVTk-~~ve~Le~la~s~PvfA~gi~ny 175 (234)
T PF06833_consen 105 GHPVIGLVYGKAMSGAFLAHGLQANRLIALPGAMI-------HVMGKP-SAARVTK-RPVEELEELAKSVPVFAPGIENY 175 (234)
T ss_pred CCCeEEEEecccccHHHHHHHHHhcchhcCCCCee-------ecCChH-HhHHHhh-cCHHHHHHHhhcCCCcCCCHHHH
Confidence 89999999999999987 57788888877664333 222111 2233333 234344455444332 555666
Q ss_pred HHcCccceecCC
Q 024304 242 EKMGLVNTVVPV 253 (269)
Q Consensus 242 ~~~GLv~~vv~~ 253 (269)
.++|.++++.+.
T Consensus 176 ~~lG~l~~l~~~ 187 (234)
T PF06833_consen 176 AKLGALDELWDG 187 (234)
T ss_pred HHhccHHHHhcc
Confidence 789999999873
No 164
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=53.27 E-value=48 Score=30.21 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEE-EcCC
Q 024304 93 NAFRPHTVKELIRAFNDARDDSSVGVIIL-TGKG 125 (269)
Q Consensus 93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl-~g~g 125 (269)
--++++.+.+|.+.+++..+++++..+|+ +|..
T Consensus 55 s~~t~~~w~~la~~i~~~~~~~~~dG~VVtHGTD 88 (323)
T smart00870 55 SNMTPADWLKLAKRINEALADDGYDGVVVTHGTD 88 (323)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEecCCc
Confidence 44999999999999988655566655555 5544
No 165
>PRK06091 membrane protein FdrA; Validated
Probab=52.77 E-value=37 Score=33.42 Aligned_cols=53 Identities=25% Similarity=0.351 Sum_probs=34.6
Q ss_pred HHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccc
Q 024304 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (269)
Q Consensus 102 ~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~ 177 (269)
.+.++|+.+.+||+.++|++.+.-+ .+... ..+....+++.||||+..-|..-
T Consensus 239 ~~~D~L~~L~~DP~TkvIvly~kpp-------------------aE~v~----~~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 239 SALTALEMLSADEKSEVIAFVSKPP-------------------AEAVR----LKIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecC-------------------chHHH----HHHHHHHhhCCCCEEEEEecCCc
Confidence 3556677778888888888887443 01111 13444555679999999998754
No 166
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=51.83 E-value=42 Score=30.19 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=20.1
Q ss_pred HHHHHHHHhhcCCCceEEEEEcCC
Q 024304 102 ELIRAFNDARDDSSVGVIILTGKG 125 (269)
Q Consensus 102 ~L~~al~~~~~d~~~~vvVl~g~g 125 (269)
.+.+.|+.+.+||+.++|++..++
T Consensus 185 ~~~D~l~~l~~Dp~T~~I~lylE~ 208 (286)
T TIGR01019 185 SFIDVLEAFEKDPETEAIVMIGEI 208 (286)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEec
Confidence 456778888899999999999875
No 167
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=51.11 E-value=11 Score=35.22 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=53.4
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEE--EcCCCCceecccccccc-ccCCccch---hhhhhh
Q 024304 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQALR-TRDGYADY---ENFGRL 152 (269)
Q Consensus 79 ~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl--~g~g~~~Fc~G~Dl~~~-~~~~~~~~---~~~~~~ 152 (269)
++|+.|.|+. |+.....++.++++.++.. +++.+|| ++++++.+....++..+ ........ ......
T Consensus 194 ~~IgYi~i~~------F~~~~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~ 266 (389)
T PLN00049 194 PKIGYIKLTT------FNQNASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRD 266 (389)
T ss_pred CCEEEEEecc------ccchhHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCcee
Confidence 4678888743 6667788999999998754 4788888 55554444333333221 11110000 000000
Q ss_pred hHHHHHHHHhcCCCcEEEEEcCcccccchhhhh
Q 024304 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185 (269)
Q Consensus 153 ~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal 185 (269)
....--.......+|++.++|+.+..++-.++.
T Consensus 267 ~~~~~~~~~~~~~~PvvVLvn~~TaSasEi~a~ 299 (389)
T PLN00049 267 IYDADGSSAIATSEPLAVLVNKGTASASEILAG 299 (389)
T ss_pred EEecCCCccccCCCCEEEEECCCCccHHHHHHH
Confidence 000000001134689999999998877755444
No 168
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=50.73 E-value=45 Score=30.04 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=20.3
Q ss_pred HHHHHHHHhhcCCCceEEEEEcCC
Q 024304 102 ELIRAFNDARDDSSVGVIILTGKG 125 (269)
Q Consensus 102 ~L~~al~~~~~d~~~~vvVl~g~g 125 (269)
.+.+.|+.+.+||+.++|++..++
T Consensus 187 ~~~D~l~~l~~Dp~T~~I~lylE~ 210 (291)
T PRK05678 187 NFIDVLEAFEEDPETEAIVMIGEI 210 (291)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEec
Confidence 456778889999999999999875
No 169
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=49.81 E-value=19 Score=34.44 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=36.9
Q ss_pred HHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccc
Q 024304 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (269)
Q Consensus 102 ~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~ 177 (269)
.+.+.++.+.+||+.++|++..++- -.| + .+....++..+ .||||+..-|..-
T Consensus 190 ~~~d~l~~l~~D~~t~~I~ly~E~~---~~~------------------~-~f~~aa~~a~~-~KPVv~~k~Grs~ 242 (447)
T TIGR02717 190 DESDLLEYLADDPDTKVILLYLEGI---KDG------------------R-KFLKTAREISK-KKPIVVLKSGTSE 242 (447)
T ss_pred CHHHHHHHHhhCCCCCEEEEEecCC---CCH------------------H-HHHHHHHHHcC-CCCEEEEecCCCh
Confidence 5667888899999999999998752 000 0 13344445544 8999999998863
No 170
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=48.35 E-value=2.1e+02 Score=25.92 Aligned_cols=194 Identities=12% Similarity=0.063 Sum_probs=97.4
Q ss_pred CCcceEEEEEEecCCE--EEEEEcCCCCCCCCCHHHHHHHHHHH-HHhhcCCCceEEEEEcCCCCceecccccc-cc---
Q 024304 66 TEFTDIIYEKAVGEGI--AKITINRPDRRNAFRPHTVKELIRAF-NDARDDSSVGVIILTGKGTEAFCSGGDQA-LR--- 138 (269)
Q Consensus 66 ~~~~~v~~~~~~~~gv--~~I~lnrp~~~Nal~~~~~~~L~~al-~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~-~~--- 138 (269)
..|..|.+-. .+++ .-=.|..+...|.++++-+.+-...+ .++...+.-++.||-|..++.|--+-+.. .+
T Consensus 96 ~~FDlvi~p~--HD~~~~~~Nvl~t~ga~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~ 173 (311)
T PF06258_consen 96 RPFDLVIVPE--HDRLPRGPNVLPTLGAPNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQ 173 (311)
T ss_pred cccCEEEECc--ccCcCCCCceEecccCCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHH
Confidence 4555555544 3333 11122233445889999888766665 44555666678888776555665443311 11
Q ss_pred ----ccCCccc-hhhhhhhhHHHHHHHHhcC--CCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCC-----CCcc
Q 024304 139 ----TRDGYAD-YENFGRLNVLDLQVQIRRL--PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTG-----PKVG 206 (269)
Q Consensus 139 ----~~~~~~~-~~~~~~~~~~~l~~~i~~~--~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~-----~~~G 206 (269)
....... .-...+..-.++...+.+. +.+-+...++.--+==.++.-.||.+|+|+|+.=-..| ..++
T Consensus 174 l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA~~tG~pV~ 253 (311)
T PF06258_consen 174 LAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEAAATGKPVY 253 (311)
T ss_pred HHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHHHHcCCCEE
Confidence 1000000 0000011111222222221 23444344555555456789999999999887755544 4556
Q ss_pred cCCCChHHHHHHhhhCHHHHHHHHHcC--CCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304 207 SFDAGYGSSIMSRLVGPKKAREMWFLA--RFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA 268 (269)
Q Consensus 207 l~p~~g~~~~l~r~~G~~~a~~l~ltg--~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la 268 (269)
+++-.+...++.|. ...|.-.| +++++.+..+- -..+.|.++-+..|..+.+++.
T Consensus 254 v~~l~~~~~r~~r~-----~~~L~~~g~~r~~~~~~~~~~--~~~~~pl~et~r~A~~i~~r~~ 310 (311)
T PF06258_consen 254 VLPLPGRSGRFRRF-----HQSLEERGAVRPFTGWRDLEQ--WTPYEPLDETDRVAAEIRERLA 310 (311)
T ss_pred EecCCCcchHHHHH-----HHHHHHCCCEEECCCcccccc--cccCCCccHHHHHHHHHHHHhh
Confidence 65544333334432 22333344 24444433332 2235666777777777776653
No 171
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=44.24 E-value=1.4e+02 Score=26.79 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=71.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceecccccccc---------ccCCccchhhhhh
Q 024304 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR---------TRDGYADYENFGR 151 (269)
Q Consensus 81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~---------~~~~~~~~~~~~~ 151 (269)
-=++.+|.. .|-++...+....+++.+.-..+.-++-||-|...+.|.=--|.... +..+..--..+.+
T Consensus 129 ~Nilpi~Gs--~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSR 206 (329)
T COG3660 129 PNILPINGS--PHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSR 206 (329)
T ss_pred CceeeccCC--CCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeec
Confidence 345666653 48899999999999999987666677888887666777543332211 0000000000111
Q ss_pred hhHHHHHHHHhc-CCCcEEEEEcCccccc--chhhhhcccEEEEeCCceEecCCC
Q 024304 152 LNVLDLQVQIRR-LPKPVIAMVAGYAVGG--GHVLHMVCDLTIAADNAIFGQTGP 203 (269)
Q Consensus 152 ~~~~~l~~~i~~-~~kP~Ia~v~G~a~Gg--G~~lal~~D~~ia~~~a~f~~~~~ 203 (269)
..-..+...+.+ .+--.+...++.--|- -..+..++|+.|+++|+.=-..|.
T Consensus 207 RTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM~sEA 261 (329)
T COG3660 207 RTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSINMCSEA 261 (329)
T ss_pred CCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchhhhhHHH
Confidence 111122223322 5555677788874444 467888999999998887655553
No 172
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=43.95 E-value=8.3 Score=24.33 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=16.1
Q ss_pred HcCCCCCHHHHHHcCccce
Q 024304 231 FLARFYTAEEAEKMGLVNT 249 (269)
Q Consensus 231 ltg~~i~a~eA~~~GLv~~ 249 (269)
-+|++++-++|.+.||+|.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 4788999999999999985
No 173
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=40.26 E-value=19 Score=30.51 Aligned_cols=97 Identities=16% Similarity=0.111 Sum_probs=50.5
Q ss_pred EEEEEEcCCCCCCCCC-HHHHHHHHHHHHHhhcCCCceEEEE--EcCCCCceeccccccc-cccCCccchhhhhhh---h
Q 024304 81 IAKITINRPDRRNAFR-PHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQAL-RTRDGYADYENFGRL---N 153 (269)
Q Consensus 81 v~~I~lnrp~~~Nal~-~~~~~~L~~al~~~~~d~~~~vvVl--~g~g~~~Fc~G~Dl~~-~~~~~~~~~~~~~~~---~ 153 (269)
|+.|.++. |. ....+.+.+++..... +++.+|| ++++++.......+.. +.............. .
T Consensus 61 igYi~i~~------f~~~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 132 (224)
T cd06567 61 IGYIRIPS------FSAESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNET 132 (224)
T ss_pred eEEEEECc------cCCcchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCcee
Confidence 88888865 33 6778888888888876 6888888 5544322211211111 111110000000000 0
Q ss_pred HHHHHHHHhcCCCcEEEEEcCcccccchhhhh
Q 024304 154 VLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185 (269)
Q Consensus 154 ~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal 185 (269)
.......-....+|++.++++.+..++-.++.
T Consensus 133 ~~~~~~~~~~~~~pv~vL~~~~taSaaE~~a~ 164 (224)
T cd06567 133 EYVAPGGGSLYDGPLVVLVNEGSASASEIFAG 164 (224)
T ss_pred EEecCCCCcccCCCEEEEECCCCccHHHHHHH
Confidence 00001112246889999999988877755444
No 174
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=39.49 E-value=1.5e+02 Score=27.47 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEEc
Q 024304 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (269)
Q Consensus 93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g 123 (269)
.-|+++.+.+|.+.+.+.-+++++.+||||-
T Consensus 78 ~~m~~~~w~~la~~I~~~~~~~~~dGvVItH 108 (351)
T COG0252 78 SDMTPEDWLRLAEAINEALDDGDVDGVVITH 108 (351)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCeEEEeC
Confidence 5699999999999999998887665665543
No 175
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=39.46 E-value=86 Score=29.70 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCC
Q 024304 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (269)
Q Consensus 93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g 125 (269)
--++++.+.+|.+.+.+.-++..-.+||.+|..
T Consensus 118 ~~mtp~~w~~La~~I~~~~~~~~dGvVVtHGTD 150 (404)
T TIGR02153 118 ENMKPEYWIKIAEAVAKALKEGADGVVVAHGTD 150 (404)
T ss_pred hhCCHHHHHHHHHHHHHHhhcCCCcEEEecCCh
Confidence 458999999999999886655333566667765
No 176
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=38.66 E-value=57 Score=25.45 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=32.5
Q ss_pred EEEEEEcCCCCCCC--CC----------HHHHHHHHHHHHHh--hcCCCceEEEEEcCCC
Q 024304 81 IAKITINRPDRRNA--FR----------PHTVKELIRAFNDA--RDDSSVGVIILTGKGT 126 (269)
Q Consensus 81 v~~I~lnrp~~~Na--l~----------~~~~~~L~~al~~~--~~d~~~~vvVl~g~g~ 126 (269)
+.+|+.+-|.|... .+ .++..++.+++.+. .+.+.++.|||.|.|.
T Consensus 25 ~~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPGf 84 (133)
T PF03464_consen 25 LQRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPGF 84 (133)
T ss_dssp EEEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEESTT
T ss_pred EEEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCHH
Confidence 45677888888754 22 35667777777776 6678899999999873
No 177
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=36.08 E-value=47 Score=26.36 Aligned_cols=101 Identities=12% Similarity=0.062 Sum_probs=48.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEE--EcCCCCceeccccccc-cccCCccch-hhhhhhhHHH
Q 024304 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQAL-RTRDGYADY-ENFGRLNVLD 156 (269)
Q Consensus 81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl--~g~g~~~Fc~G~Dl~~-~~~~~~~~~-~~~~~~~~~~ 156 (269)
|+.|.|+.=.. +....+++.+.++.+.+ .+++.+|| ++.+++..+....+-. +........ ..........
T Consensus 2 i~yl~i~sf~~----~~~~~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 76 (169)
T PF03572_consen 2 IGYLRIPSFSE----NKSFDEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKW 76 (169)
T ss_dssp EEEEEES-BCC----GHHHHHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTC
T ss_pred EEEEEeCcccC----ccccHHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEeccccccccc
Confidence 67777765210 25788888888988875 55778888 4443322222222211 111110000 0000000000
Q ss_pred HHH-----HHhcCCCcEEEEEcCcccccchhhhhc
Q 024304 157 LQV-----QIRRLPKPVIAMVAGYAVGGGHVLHMV 186 (269)
Q Consensus 157 l~~-----~i~~~~kP~Ia~v~G~a~GgG~~lal~ 186 (269)
... .-...++|++.++++.|.+.+-.++.+
T Consensus 77 ~~~~~~~~~~~~~~~~v~vL~~~~t~Saae~fa~~ 111 (169)
T PF03572_consen 77 VSTIKWSTPKNRFNGPVYVLTDENTASAAEIFASA 111 (169)
T ss_dssp CHEEEECSSTT-SSSEEEEEE-TTBBTHHHHHHHH
T ss_pred ccCCCCccccccCCCCEEEEeCCCCCChhHHHHHH
Confidence 000 034588999999999998888665553
No 178
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=34.66 E-value=1.4e+02 Score=27.73 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEEc
Q 024304 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (269)
Q Consensus 93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g 123 (269)
--++++.+..|.+.+++.-+++++..+|++.
T Consensus 83 ~~mt~~dw~~la~~I~~~~~~~~~~GiVVtH 113 (349)
T TIGR00520 83 QDMNEEVLLKLAKGINELLASDDYDGIVITH 113 (349)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 4599999999999998887766666555554
No 179
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=34.30 E-value=2.7e+02 Score=23.58 Aligned_cols=97 Identities=16% Similarity=0.177 Sum_probs=51.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEE--EcCCCCceeccccccc-cccCCccc--hhhhhhhhHH
Q 024304 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQAL-RTRDGYAD--YENFGRLNVL 155 (269)
Q Consensus 81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl--~g~g~~~Fc~G~Dl~~-~~~~~~~~--~~~~~~~~~~ 155 (269)
|+.|.++. |+....+++.++++.+.+.. ++.+|| ++++++....+.++.. +....... ..........
T Consensus 50 igYi~i~s------f~~~~~~~~~~~l~~~~~~~-~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~g~~~~~ 122 (211)
T cd07560 50 IGYIRITS------FSENTAEELKKALKELKKQG-MKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRNGKREAY 122 (211)
T ss_pred eEEEEEcc------cCchhHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecCCceEEE
Confidence 88888865 55677889999999987654 788887 4444322111111111 11110000 0000000000
Q ss_pred HHHHHHhcCCCcEEEEEcCcccccchhhhh
Q 024304 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185 (269)
Q Consensus 156 ~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal 185 (269)
. ...-....+|++.++++.+.+++=.++.
T Consensus 123 ~-~~~~~~~~~pvvVLvn~~TaSaaE~~a~ 151 (211)
T cd07560 123 A-SDDGGLYDGPLVVLVNGGSASASEIVAG 151 (211)
T ss_pred e-cCCCccCCCCEEEEeCCCcccHHHHHHH
Confidence 0 0001147899999999999888755544
No 180
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=34.24 E-value=1.2e+02 Score=28.88 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCC
Q 024304 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (269)
Q Consensus 93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g 125 (269)
--++++.+.+|.+.+.+.-++..-.+||.+|..
T Consensus 131 ~~mtp~~W~~La~~I~~~~~~~~dGvVVtHGTD 163 (419)
T PRK04183 131 ENMTPEYWVEIAEAVYEEIKNGADGVVVAHGTD 163 (419)
T ss_pred hhCCHHHHHHHHHHHHHHhhccCCeEEEecCCc
Confidence 459999999999999886655333556666655
No 181
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=34.24 E-value=1.4e+02 Score=21.69 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=32.1
Q ss_pred EEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCC
Q 024304 72 IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (269)
Q Consensus 72 ~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g 125 (269)
.+++ .+++.++++..+ ++.....++.+.+..+-..++.+.+||--.+
T Consensus 2 ~~~~--~~~~~vi~l~G~-----L~f~~~~~~~~~l~~~~~~~~~~~vilDls~ 48 (106)
T TIGR02886 2 EFEV--KGDVLIVRLSGE-----LDHHTAERVRRKIDDAIERRPIKHLILNLKN 48 (106)
T ss_pred eEEE--ECCEEEEEEecc-----cchhhHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 3456 788999999664 5566667777777665443457788886655
No 182
>PRK11186 carboxy-terminal protease; Provisional
Probab=32.42 E-value=46 Score=33.64 Aligned_cols=101 Identities=18% Similarity=0.285 Sum_probs=54.5
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEE--EcCCCCceecccccccc-ccCCc-cch-hhhhhh
Q 024304 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQALR-TRDGY-ADY-ENFGRL 152 (269)
Q Consensus 78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl--~g~g~~~Fc~G~Dl~~~-~~~~~-~~~-~~~~~~ 152 (269)
++.|+.|.|+ .|+..+..++.+++.++.. .+++.+|| +++|++....+.++..+ ...+. ... ......
T Consensus 352 ~~kIGYI~I~------sF~~~~~~d~~~~l~~l~~-~~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~ 424 (667)
T PRK11186 352 GEKVGVLDIP------GFYVGLTDDVKKQLQKLEK-QNVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRV 424 (667)
T ss_pred CCcEEEEEec------ccccchHHHHHHHHHHHHH-CCCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCce
Confidence 4568888884 3666677888888888865 45888888 66665444443333221 11110 000 000000
Q ss_pred hHHHHHHHHhcCCCcEEEEEcCcccccchhhhh
Q 024304 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185 (269)
Q Consensus 153 ~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal 185 (269)
....-...-.....|++.+||+....++=.++.
T Consensus 425 ~~~~~~~~~~~~~gPlvVLVN~~SASASEIfA~ 457 (667)
T PRK11186 425 RVDSDTDGVVYYKGPLVVLVDRYSASASEIFAA 457 (667)
T ss_pred eccccCCcccccCCCEEEEeCCCCccHHHHHHH
Confidence 000000011235689999999998777654444
No 183
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=30.60 E-value=2.5e+02 Score=23.35 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=41.7
Q ss_pred CCCCHHHHH-HHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEE
Q 024304 93 NAFRPHTVK-ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (269)
Q Consensus 93 Nal~~~~~~-~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~ 171 (269)
-..|.+.++ -...+++.+..+. .++|+-=-|+ .+..-..+.+....+.+++||+||.
T Consensus 79 Y~V~v~~le~i~~~al~rA~~~a--DvIIIDEIGp--------------------MElks~~f~~~ve~vl~~~kpliat 136 (179)
T COG1618 79 YGVNVEGLEEIAIPALRRALEEA--DVIIIDEIGP--------------------MELKSKKFREAVEEVLKSGKPLIAT 136 (179)
T ss_pred EEeeHHHHHHHhHHHHHHHhhcC--CEEEEecccc--------------------hhhccHHHHHHHHHHhcCCCcEEEE
Confidence 455666666 6667777776663 4888877665 1111223667778889999999999
Q ss_pred EcCc
Q 024304 172 VAGY 175 (269)
Q Consensus 172 v~G~ 175 (269)
++-.
T Consensus 137 lHrr 140 (179)
T COG1618 137 LHRR 140 (179)
T ss_pred Eecc
Confidence 9865
No 184
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=30.33 E-value=1.6e+02 Score=21.72 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=37.3
Q ss_pred EEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCC--------ceEEEEEcCC
Q 024304 72 IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSS--------VGVIILTGKG 125 (269)
Q Consensus 72 ~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~--------~~vvVl~g~g 125 (269)
..+. .+++.+++++.| ++-....++.+.+..+..... ++.|||--.+
T Consensus 3 ~~~~--~~~v~ii~~~g~-----l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~ 57 (117)
T PF01740_consen 3 EIET--HDGVLIIRLDGP-----LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSG 57 (117)
T ss_dssp EEEE--ETTEEEEEEESE-----ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETT
T ss_pred eeEE--ECCEEEEEEeeE-----EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEe
Confidence 4555 789999999875 778888899998988877665 7888887654
No 185
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=29.93 E-value=3.5e+02 Score=24.82 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCc-eEEEEEcCC
Q 024304 93 NAFRPHTVKELIRAFNDARDDSSV-GVIILTGKG 125 (269)
Q Consensus 93 Nal~~~~~~~L~~al~~~~~d~~~-~vvVl~g~g 125 (269)
.-++++.+.+|.+.+++... ++ .+||.+|..
T Consensus 61 s~mt~~~w~~la~~I~~~~~--~~dG~VVtHGTD 92 (335)
T PRK09461 61 SDMTPEDWQHIADDIKANYD--DYDGFVILHGTD 92 (335)
T ss_pred ccCCHHHHHHHHHHHHHHhc--cCCeEEEeeccc
Confidence 56999999999999987552 34 455556654
No 186
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=28.51 E-value=1.2e+02 Score=26.25 Aligned_cols=36 Identities=19% Similarity=0.464 Sum_probs=28.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCC
Q 024304 88 RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126 (269)
Q Consensus 88 rp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~ 126 (269)
.++..+.++.+.+.++.+.+..+. ..++|+++|.|+
T Consensus 13 ~~~~~~~~~~~~l~~l~~~l~~l~---g~~vvlVhGgg~ 48 (252)
T cd04241 13 DKDRPETIREENLERIARELAEAI---DEKLVLVHGGGS 48 (252)
T ss_pred cCCCCCccCHHHHHHHHHHHHhcc---CCCEEEEECCCc
Confidence 444456799999999999998876 468999999764
No 187
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=27.74 E-value=1.9e+02 Score=26.13 Aligned_cols=32 Identities=34% Similarity=0.488 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCC
Q 024304 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (269)
Q Consensus 93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g 125 (269)
.-++++.+.+|.+.+++.-++ --.+||++|..
T Consensus 52 ~~~t~~~~~~la~~i~~~~~~-~~GvVVtHGTD 83 (313)
T PF00710_consen 52 SDMTPEDWLELARAIQAALDD-YDGVVVTHGTD 83 (313)
T ss_dssp GG--HHHHHHHHHHHHHHHTT-CSEEEEE--ST
T ss_pred hhcCHHHHHHHHHHHHHHHHh-cCeEEEecCch
Confidence 449999999999999998844 33455556654
No 188
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=27.13 E-value=2.4e+02 Score=20.29 Aligned_cols=49 Identities=20% Similarity=0.254 Sum_probs=33.0
Q ss_pred eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCC
Q 024304 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (269)
Q Consensus 70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g 125 (269)
++.++. .+++.+|++..+ ++......+.+.+..+..++..+.|++--.+
T Consensus 4 ~i~~~~--~~~~~vi~~~G~-----l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 4 NIETEV--QEGVVIVRLSGE-----LDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred EEEEEE--ECCEEEEEEecc-----cccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 456666 788999999753 4555566677777666554567778876544
No 189
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=26.78 E-value=3.3e+02 Score=24.65 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=52.1
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEE--EcCCCCceeccccccc-cccCCcc-ch-hhhhhhhH
Q 024304 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQAL-RTRDGYA-DY-ENFGRLNV 154 (269)
Q Consensus 80 gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl--~g~g~~~Fc~G~Dl~~-~~~~~~~-~~-~~~~~~~~ 154 (269)
.|+.|.++. |+....+++.++++.++. .+++.+|| ++++++.......+.. +...... .. ........
T Consensus 152 ~igYi~i~~------f~~~~~~~~~~~l~~l~~-~~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~ 224 (334)
T TIGR00225 152 SVGYIRISS------FSEHTTEDVKKALDKLEK-KNAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRH 224 (334)
T ss_pred EEEEEEEEe------cccchHHHHHHHHHHHHh-ccCceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceE
Confidence 378888755 556678889999988865 35788888 4444322222212111 1111100 00 00000000
Q ss_pred HHHHHHHhcCCCcEEEEEcCcccccchhhhhcc
Q 024304 155 LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187 (269)
Q Consensus 155 ~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~ 187 (269)
.. ...-....+|++.++++.+.+++-.++.+.
T Consensus 225 ~~-~~~~~~~~~pv~vLvn~~TaSaaE~~a~~l 256 (334)
T TIGR00225 225 YK-ANGRQPYNLPLVVLVNRGSASASEIFAGAL 256 (334)
T ss_pred Ee-cCCCccCCCCEEEEECCCCCcHHHHHHHHH
Confidence 00 000113679999999999988876555543
No 190
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=26.74 E-value=36 Score=27.50 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=19.7
Q ss_pred CCceEEEEEcCCCCceeccccccccc
Q 024304 114 SSVGVIILTGKGTEAFCSGGDQALRT 139 (269)
Q Consensus 114 ~~~~vvVl~g~g~~~Fc~G~Dl~~~~ 139 (269)
+++++.=+.|.. +..|+|+||+-..
T Consensus 78 ESi~v~D~Agn~-hVLCaGIDLNPAi 102 (178)
T PF12268_consen 78 ESIKVKDLAGNN-HVLCAGIDLNPAI 102 (178)
T ss_pred cccccccCCCCc-eeEEecccCCHhH
Confidence 456777788877 7999999998643
No 191
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=26.13 E-value=2e+02 Score=26.46 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCC
Q 024304 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (269)
Q Consensus 93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g 125 (269)
.-++++.+.+|.+.+++.-++ --.+||++|..
T Consensus 57 s~~tp~~w~~la~~I~~~~~~-~dG~VVtHGTD 88 (336)
T TIGR00519 57 ENMKPEYWVEIAEAVKKEYDD-YDGFVITHGTD 88 (336)
T ss_pred ccCCHHHHHHHHHHHHHHHhc-CCeEEEccCCc
Confidence 349999999999999876544 22555566655
No 192
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=23.58 E-value=1.8e+02 Score=29.10 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=33.9
Q ss_pred HHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304 106 AFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (269)
Q Consensus 106 al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~ 173 (269)
.++++...++-+-||++|-.+--|--|- ......|.+.+..+.||.||+|.
T Consensus 355 v~erl~hr~dg~yvvvsgitptp~gegk-----------------st~t~glvqal~~l~k~~iacvr 405 (935)
T KOG4230|consen 355 VLERLKHRKDGKYVVVSGITPTPLGEGK-----------------STTTAGLVQALGALGKLAIACVR 405 (935)
T ss_pred HHHHHhccCCCcEEEEeccCCCCCCCCc-----------------chhHHHHHHHHHhhCCcceeeec
Confidence 4556666777889999997763333220 01134567788889999999983
No 193
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=22.68 E-value=65 Score=27.97 Aligned_cols=77 Identities=19% Similarity=0.162 Sum_probs=43.3
Q ss_pred HHHHHHHHhhcC-CCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCc-cccc
Q 024304 102 ELIRAFNDARDD-SSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGY-AVGG 179 (269)
Q Consensus 102 ~L~~al~~~~~d-~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~-a~Gg 179 (269)
....+|+++..+ .+|..||..+..+ .+.-|+|...+. .+.-.|..--..|.|. |.||
T Consensus 107 Aa~~AL~~~g~~~~dIthlv~vs~TG-~~~PglD~~l~~--------------------~LgL~~~v~R~~i~~~GC~gg 165 (226)
T PF00195_consen 107 AARKALAEAGLDPSDITHLVTVSCTG-IAAPGLDARLIN--------------------RLGLRPDVQRTPIFGMGCAGG 165 (226)
T ss_dssp HHHHHHHHHTS-GGGECEEEEEESSS-SECS-HHHHHHH--------------------HHT--TTSEEEEEES-GGGHH
T ss_pred HHHHHHHHcCCCCcccceEEEEecCC-cCCCchhHHHHh--------------------cCCCCCCcEEEEEeccchhhH
Confidence 344567776655 4566666554442 788888765422 3322333444456665 7777
Q ss_pred chhhhhcccEEEEeCCceEe
Q 024304 180 GHVLHMVCDLTIAADNAIFG 199 (269)
Q Consensus 180 G~~lal~~D~~ia~~~a~f~ 199 (269)
...|..+.|+.-+.++++.-
T Consensus 166 ~~~L~~A~~~~~~~p~a~VL 185 (226)
T PF00195_consen 166 AAGLRRAKDIARANPGARVL 185 (226)
T ss_dssp HHHHHHHHHHHHHSTT-EEE
T ss_pred HHHHHHHHHHHhCCccceEE
Confidence 78899998886666665543
No 194
>PLN02312 acyl-CoA oxidase
Probab=22.62 E-value=73 Score=32.33 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=18.0
Q ss_pred CcchhhHH--HHHHHHhhcccccc
Q 024304 1 MAPQIDSA--RRRMTAVANHLVPV 22 (269)
Q Consensus 1 ~~~~~~~~--~~~~~~~~~~~~~~ 22 (269)
|.+-|++. .||+.+|++||.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (680)
T PLN02312 1 MMAGMSPSAAARRAHVLANHLAQS 24 (680)
T ss_pred CCCccchhHHHHHHHHHHHhccCC
Confidence 66778764 49999999999885
No 195
>smart00463 SMR Small MutS-related domain.
Probab=22.39 E-value=1.7e+02 Score=20.34 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhcCCC-ceEEEEEcCCC
Q 024304 97 PHTVKELIRAFNDARDDSS-VGVIILTGKGT 126 (269)
Q Consensus 97 ~~~~~~L~~al~~~~~d~~-~~vvVl~g~g~ 126 (269)
.+.+..|.+.++.+..... -.+.|++|.|.
T Consensus 12 ~eA~~~l~~~l~~~~~~~~~~~~~II~G~G~ 42 (80)
T smart00463 12 EEALTALDKFLNNARLKGLEQKLVIITGKGK 42 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcccC
Confidence 4667788888888887765 57999999984
No 196
>PLN02287 3-ketoacyl-CoA thiolase
Probab=21.75 E-value=85 Score=30.13 Aligned_cols=41 Identities=27% Similarity=0.325 Sum_probs=28.3
Q ss_pred hhHHHHHHHHhhccccccccCCCCCCccccccCCCCCccccc
Q 024304 5 IDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRI 46 (269)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~ 46 (269)
|+++..|-.++..||-|.++ -+..-|...+.+....-|||.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 41 (452)
T PLN02287 1 MEKAINRQRVLLRHLRPSSS-EPSSLSASACAAGDSAAYHRT 41 (452)
T ss_pred CchHHHHHHHHHhhccCCCC-Cccccccccccccchhhhccc
Confidence 78899999999999987754 222333444555666778875
No 197
>PF06935 DUF1284: Protein of unknown function (DUF1284); InterPro: IPR009702 This family consists of several hypothetical bacterial and archaeal proteins of around 130 residues in length. The function of this family is unknown, although it is thought that they may be iron-sulphur binding proteins.
Probab=21.68 E-value=1.4e+02 Score=22.43 Aligned_cols=36 Identities=19% Similarity=0.475 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceecc
Q 024304 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG 132 (269)
Q Consensus 95 l~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G 132 (269)
.|+++.+.|...+..++++++..+-|+.|.. ..|+.
T Consensus 2 YS~~Fv~Nm~~Iv~~l~~~~~~~I~iv~~~D--dIC~~ 37 (103)
T PF06935_consen 2 YSPEFVENMKKIVERLRNDPGEPIEIVDGPD--DICAP 37 (103)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEECcC--HHHHh
Confidence 5789999999999999888888899999854 35443
No 198
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=21.60 E-value=1.3e+02 Score=21.06 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEcCC
Q 024304 97 PHTVKELIRAFNDARDDSSVGVIILTGKG 125 (269)
Q Consensus 97 ~~~~~~L~~al~~~~~d~~~~vvVl~g~g 125 (269)
.+....+.+.++.+.....-.+.||||.|
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G 37 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKG 37 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--ST
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccC
Confidence 35667888888888877777899999998
No 199
>PRK11096 ansB L-asparaginase II; Provisional
Probab=20.78 E-value=3e+02 Score=25.47 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEEc
Q 024304 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (269)
Q Consensus 93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g 123 (269)
.-++++-+.+|.+.++. +++++..+|++.
T Consensus 80 ~~~t~~~~~~l~~~i~~--~~~~~dGiVVtH 108 (347)
T PRK11096 80 QDMNDEVWLTLAKKINT--DCDKTDGFVITH 108 (347)
T ss_pred ccCCHHHHHHHHHHHHH--hcCCCCEEEEeC
Confidence 45899999999999987 234555555544
No 200
>COG3892 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.49 E-value=1.6e+02 Score=26.18 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=27.8
Q ss_pred CCC--CCCCCC-HHHHHHHHHHHHHhhcCCCceEEEEEcCC
Q 024304 88 RPD--RRNAFR-PHTVKELIRAFNDARDDSSVGVIILTGKG 125 (269)
Q Consensus 88 rp~--~~Nal~-~~~~~~L~~al~~~~~d~~~~vvVl~g~g 125 (269)
+|+ |+-.+. ++-+.++..++.+ +||.|++|||-|-.
T Consensus 200 ~PDWWKLePl~~~~aW~~i~~~I~~--~DP~cRGiViLGLd 238 (310)
T COG3892 200 YPDWWKLEPLASPDAWAEIEAAIER--RDPHCRGIVILGLD 238 (310)
T ss_pred CcccccCCCCCChHHHHHHHHHHHh--cCcccceeEEeccc
Confidence 455 556666 7888888888764 78999999999854
No 201
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=20.37 E-value=5.9e+02 Score=23.13 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCC
Q 024304 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (269)
Q Consensus 93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g 125 (269)
.-++++-+.+|.+.+.+.-.+ --.+||++|..
T Consensus 58 s~~t~~~w~~l~~~I~~~~~~-~dGiVVtHGTD 89 (323)
T cd00411 58 SDMTDEDWLKIAKDINELYDS-YDGFVITHGTD 89 (323)
T ss_pred ccCCHHHHHHHHHHHHHHHHh-cCcEEEEcCcc
Confidence 349999999999988776544 22455556654
Done!