BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024305
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
Query: 162 LEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQ 221
L++ EK A A +SF E + L+ NM I + DR Q
Sbjct: 112 LDLAEKDFTVNTVAGAMKSF------FSELPDPLVPYNM------QIDLVEAHKINDREQ 159
Query: 222 ELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEHSNSI 260
+LH LK+++ ++ ++ EV Y ++ HL + H+N +
Sbjct: 160 KLHALKEVLKKFPKE--NHEVFKYVIS-HLNKVSHNNKV 195
>pdb|3SY2|A Chain A, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|B Chain B, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 621
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 107 NAQGVATTN---GEVPSPDDPSASKVFQLDGPEWVE-----LFVREMMSSSNIDDARA-R 157
N Q +A TN V DD S S++ + P E + ++S+ ++ DA +
Sbjct: 461 NQQFLAATNQKHSTVKLIDDASVSRLATIFDPLLPEGKLSPAHYQHILSAYHLTDATPQK 520
Query: 158 ASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYE 217
+ L L + +S+ + H L+ EAL+Q+ L A+ E+ E+
Sbjct: 521 QAETLFCLSTAFARYSSSAIFGTEHDSPPALRGYAEALMQKAWELSPAIFPSSEQFTEWS 580
Query: 218 DRSQELH 224
DR LH
Sbjct: 581 DRFHGLH 587
>pdb|1F1R|A Chain A, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Arthrobacter Globiformis (Native, Non-Cryo)
pdb|1F1R|B Chain B, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Arthrobacter Globiformis (Native, Non-Cryo)
pdb|1F1U|A Chain A, Crystal Structure Of Homoprotocatechuate 2,3-dioxygenase
From Arthrobacter Globiformis (native, Low Temperature)
pdb|1F1U|B Chain B, Crystal Structure Of Homoprotocatechuate 2,3-dioxygenase
From Arthrobacter Globiformis (native, Low Temperature)
pdb|1F1V|A Chain A, Anaerobic Substrate Complex Of Homoprotocatechuate
2,3-Dioxygenase From Arthrobacter Globiformis. (Complex
With 3,4- Dihydroxyphenylacetate)
pdb|1F1V|B Chain B, Anaerobic Substrate Complex Of Homoprotocatechuate
2,3-Dioxygenase From Arthrobacter Globiformis. (Complex
With 3,4- Dihydroxyphenylacetate)
Length = 323
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 10/134 (7%)
Query: 138 VELFVREMMSSSNIDDARA-------RASRALEILEKSICARASAEAAQSFHQENKMLKE 190
V F + S + +D A A R R E K I E F E E
Sbjct: 74 VAAFAYRVKSPAEVDAAEAYYKELGCRTERRKEGFTKGIGDSVRVEDPLGFPYEFFYETE 133
Query: 191 QVEALIQENMILKRA--VSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALT 248
VE L Q + V + H Q D + +L+ L + E ++ + YA
Sbjct: 134 HVERLTQRYDLYSAGELVRLDHFNQVT-PDVPRGRAYLEDLGFRVSEDIKDSDGVTYAAW 192
Query: 249 MHLKQAEHSNSIPG 262
MH KQ H ++ G
Sbjct: 193 MHRKQTVHDTALTG 206
>pdb|2QYU|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 627
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 107 NAQGVATTN---GEVPSPDDPSASKVFQLDGPEWVE-----LFVREMMSSSNIDDARA-R 157
N Q +A TN V DD S S++ + P E + ++S+ ++ DA +
Sbjct: 467 NQQFLAATNQKHSTVKLIDDASVSRLATIFDPLLPEGKLSPAHYQHILSAYHLTDATPQK 526
Query: 158 ASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYE 217
+ L L + +S+ + H L+ EAL+Q+ L A+ E+ E+
Sbjct: 527 QAETLFCLSTAFARYSSSAIFGTEHDSPPALRGYAEALMQKAWELSPAIFPSSEQFTEWS 586
Query: 218 DRSQELH 224
DR LH
Sbjct: 587 DRFHGLH 593
>pdb|2NSF|A Chain A, Crystal Structure Of The Mycothiol-Dependent
Maleylpyruvate Isomerase
Length = 261
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 94 GSVAGKSDLAADANAQGVATTNGEVPSP 121
GS+AG AA + GV ++ GEVP P
Sbjct: 230 GSLAGIVRYAAGRGSDGVTSSTGEVPEP 257
>pdb|2NSG|A Chain A, Crystal Structure Of The Mycothiol-Dependent
Maleylpyruvate Isomerase H52a Mutant
Length = 261
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 94 GSVAGKSDLAADANAQGVATTNGEVPSP 121
GS+AG AA + GV ++ GEVP P
Sbjct: 230 GSLAGIVRYAAGRGSDGVTSSTGEVPEP 257
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 74 LDSAIRSLNELRLGSADNNLGSVAGKSDLAADANAQGVATTNGEVPSPDD 123
+D + S + G D G V ++D+ A +QG+ G + SP D
Sbjct: 136 VDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHD 185
>pdb|2QZA|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
pdb|2QZA|B Chain B, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 618
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 107 NAQGVATTN---GEVPSPDDPSASKVFQLDGPEWVE-----LFVREMMSSSNIDDARA-R 157
N Q +A TN V DD S S++ + P E + ++S+ ++ DA +
Sbjct: 458 NQQFLAATNQKHSTVKLIDDASVSRLATIFDPLLPEGKLSPAHYQHILSAYHLTDATPQK 517
Query: 158 ASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYE 217
+ L L + +S+ + H L+ EAL Q+ L A+ E+ E+
Sbjct: 518 QAETLFCLSTAFARYSSSAIFGTEHDSPPALRGYAEALXQKAWELSPAIFPSSEQFTEWS 577
Query: 218 DRSQELH 224
DR LH
Sbjct: 578 DRFHGLH 584
>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5E|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5F|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
pdb|1E5F|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
Length = 404
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 74 LDSAIRSLNELRLGSADNNLGSVAGKSDLAADANAQGVATTNGEVPSPDD 123
+D + S + G D G + GK+DL G+ G V SP D
Sbjct: 200 VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHD 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,712,285
Number of Sequences: 62578
Number of extensions: 224903
Number of successful extensions: 811
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 26
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)