BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024305
(269 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ILI5|NS1AB_TASV2 Non-structural polyprotein 1AB OS=Turkey astrovirus 2 GN=ORF1 PE=3
SV=2
Length = 1638
Score = 35.0 bits (79), Expect = 0.58, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 176 EAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQE 235
EA ++ + NK ++EQ++ +I+ N L R IQ +++ ++ LH+ ++ + +
Sbjct: 140 EAKENLEKANK-IQEQLDKVIESNKALHR--KIQERNREKMQEYMVRLHNTQKDRDDWVQ 196
Query: 236 QLRTLEVNNYALTMHLKQAEHS 257
+ LE N L LK+ E++
Sbjct: 197 RCSRLEQENVTLQKRLKEKENA 218
>sp|Q9ILI6|NS1A_TASV2 Non-structural polyprotein 1A OS=Turkey astrovirus 2 GN=ORF1 PE=3
SV=1
Length = 1125
Score = 35.0 bits (79), Expect = 0.64, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 176 EAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQE 235
EA ++ + NK ++EQ++ +I+ N L R IQ +++ ++ LH+ ++ + +
Sbjct: 140 EAKENLEKANK-IQEQLDKVIESNKALHR--KIQERNREKMQEYMVRLHNTQKDRDDWVQ 196
Query: 236 QLRTLEVNNYALTMHLKQAEHS 257
+ LE N L LK+ E++
Sbjct: 197 RCSRLEQENVTLQKRLKEKENA 218
>sp|A7E2F4|GOG8A_HUMAN Golgin subfamily A member 8A OS=Homo sapiens GN=GOLGA8A PE=2 SV=3
Length = 631
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 157 RASRALEILEKSICARASAEAAQ--SFHQENK-MLKEQVEALIQENMILKRAVSIQHERQ 213
R+S+ + LE S+CA A+ + + F +K +LK Q+E I+E ++LK V+ E
Sbjct: 192 RSSQRIGELEWSLCAVAATQKKKPDGFSSRSKALLKRQLEQSIREQILLKGHVTQLKESL 251
Query: 214 KEYE-DRSQELHHLKQLVSQYQEQLRTL 240
KE + +R Q +K +Q+Q+++R +
Sbjct: 252 KEVQLERDQYAEQIKGERAQWQQRMRKM 279
>sp|A8MQT2|GOG8B_HUMAN Golgin subfamily A member 8B OS=Homo sapiens GN=GOLGA8B PE=2 SV=2
Length = 603
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 157 RASRALEILEKSICARASAEAAQ--SFHQENK-MLKEQVEALIQENMILKRAVSIQHERQ 213
R+S+ + LE S+CA A+ + + F +K +LK Q+E I+E ++LK V+ E
Sbjct: 164 RSSQRIGELEWSLCAVAATQKKKPDGFSSRSKALLKRQLEQSIREQILLKGHVTQLKESL 223
Query: 214 KEYE-DRSQELHHLKQLVSQYQEQLRTL 240
KE + +R Q +K +Q+Q+++R +
Sbjct: 224 KEVQLERDQYAEQIKGERAQWQQRMRKM 251
>sp|Q60925|DBP_MOUSE D site-binding protein OS=Mus musculus GN=Dbp PE=2 SV=2
Length = 325
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 15/149 (10%)
Query: 106 ANAQGVATTNGEVPSPDDPSASKVFQLDGPEWVELFVREMMSSSNIDDARARAS----RA 161
A T+ + PSP DP +V P+ +L + + D R R S +
Sbjct: 178 AGGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSEEELKP 237
Query: 162 LEILEKSICARASAEAAQS-----FHQENKMLKEQVEA-LIQENMILKRAVSIQHE---- 211
I++K+ + E ++ N+ K +A ++EN I RA ++ E
Sbjct: 238 QPIMKKARKVQVPEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALL 297
Query: 212 RQKEYEDRSQELHHLKQLVSQYQEQLRTL 240
RQ+ R QEL H + ++S+YQ Q TL
Sbjct: 298 RQEVVAVR-QELSHYRAVLSRYQAQHGTL 325
>sp|P16443|DBP_RAT D site-binding protein OS=Rattus norvegicus GN=Dbp PE=2 SV=2
Length = 325
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 15/149 (10%)
Query: 106 ANAQGVATTNGEVPSPDDPSASKVFQLDGPEWVELFVREMMSSSNIDDARARAS----RA 161
A T+ + PSP DP +V P+ +L + + D R R S +
Sbjct: 178 AGGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSEEELKP 237
Query: 162 LEILEKSICARASAEAAQS-----FHQENKMLKEQVEA-LIQENMILKRAVSIQHE---- 211
I++K+ + E ++ N+ K +A ++EN I RA ++ E
Sbjct: 238 QPIMKKARKVQVPEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALL 297
Query: 212 RQKEYEDRSQELHHLKQLVSQYQEQLRTL 240
RQ+ R QEL H + ++S+YQ Q TL
Sbjct: 298 RQEVVAVR-QELSHYRAVLSRYQAQHGTL 325
>sp|Q9QXZ0|MACF1_MOUSE Microtubule-actin cross-linking factor 1 OS=Mus musculus GN=Macf1
PE=1 SV=2
Length = 7354
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 15/95 (15%)
Query: 108 AQGVATTNGEVPSPDDPSASKV---FQLDGPEWVELFVREMMSSSNIDDARARASRALEI 164
AQG+ T G++ PSAS+V Q +WVEL + SS ID A ++++ ++
Sbjct: 4600 AQGILTGPGDM----SPSASQVHKDLQSISQKWVELTDKLNSRSSQIDQAIVKSTQYQDL 4655
Query: 165 LE------KSICARASAEAAQSFHQENKMLKEQVE 193
L+ K+I R S ++A S E +K+Q+E
Sbjct: 4656 LQDLSEKVKAIGQRLSGQSAISTQPE--AVKQQLE 4688
>sp|Q2LPW5|SYD1_SYNAS Aspartate--tRNA ligase 1 OS=Syntrophus aciditrophicus (strain SB)
GN=aspS1 PE=3 SV=1
Length = 723
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 29/135 (21%)
Query: 138 VELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEA--- 194
+E+FV E+ S + + I +K++ A AS+ A +++ +M ++
Sbjct: 114 IEVFVSELTVLSESE------ALPFAISDKAMVAGASSAGADHVNEDLRMQYRYLDIRRP 167
Query: 195 LIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQA 254
+Q+N+IL+ H + Q V ++ + +EV LTM +
Sbjct: 168 AMQKNLILR--------------------HRISQCVREFLDSRGFVEVETPVLTMSTPEG 207
Query: 255 EHSNSIPGRFHPDVF 269
+P R HP F
Sbjct: 208 ARDYLVPSRIHPRSF 222
>sp|B1KWM4|EFTS_CLOBM Elongation factor Ts OS=Clostridium botulinum (strain Loch Maree /
Type A3) GN=tsf PE=3 SV=1
Length = 307
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 31/146 (21%)
Query: 65 RALEECGDDLDSAIRSLNELRLGSADNNLGSVAGKSDLAADANAQGVATTNGEVPSPDDP 124
+AL EC DL+ A+ L E L +A G VA A+G+ +T S D
Sbjct: 23 KALTECDGDLEKAVEVLREKGLAAAAKKSGRVA----------AEGIVST---YISEDMK 69
Query: 125 SASKV---FQLDGPEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSF 181
+ S V + D ELFV E+ ++ + A + S A E+LE+ A
Sbjct: 70 NGSIVEFNCETDFVSVNELFV-ELANNLSKQAAFSNVSTAEELLEEKYIA---------- 118
Query: 182 HQENKMLKEQVEALIQ---ENMILKR 204
E+K++K+ + LI ENM L+R
Sbjct: 119 -DESKLVKDVITELIAKLGENMNLRR 143
>sp|A7GG22|EFTS_CLOBL Elongation factor Ts OS=Clostridium botulinum (strain Langeland /
NCTC 10281 / Type F) GN=tsf PE=3 SV=1
Length = 307
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 31/146 (21%)
Query: 65 RALEECGDDLDSAIRSLNELRLGSADNNLGSVAGKSDLAADANAQGVATTNGEVPSPDDP 124
+AL EC DL+ A+ L E L +A G VA A+G+ +T S D
Sbjct: 23 KALTECDGDLEKAVEVLREKGLAAAAKKSGRVA----------AEGIVST---YISEDMK 69
Query: 125 SASKV---FQLDGPEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSF 181
+ S V + D ELFV E+ ++ + A + S A E+LE+ A
Sbjct: 70 NGSIVEFNCETDFVSVNELFV-ELANNLSKQAAFSNVSTAEELLEEKYIA---------- 118
Query: 182 HQENKMLKEQVEALIQ---ENMILKR 204
E+K++K+ + LI ENM L+R
Sbjct: 119 -DESKLVKDVITELIAKLGENMNLRR 143
>sp|B1II65|EFTS_CLOBK Elongation factor Ts OS=Clostridium botulinum (strain Okra / Type
B1) GN=tsf PE=3 SV=1
Length = 307
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 31/146 (21%)
Query: 65 RALEECGDDLDSAIRSLNELRLGSADNNLGSVAGKSDLAADANAQGVATTNGEVPSPDDP 124
+AL EC DL+ A+ L E L +A G VA A+G+ +T S D
Sbjct: 23 KALTECDGDLEKAVEVLREKGLAAAAKKSGRVA----------AEGIVST---YISEDMK 69
Query: 125 SASKV---FQLDGPEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSF 181
+ S V + D ELFV E+ ++ + A + S A E+LE+ A
Sbjct: 70 NGSIVEFNCETDFVSVNELFV-ELANNLSKQAAFSNVSTAEELLEEKYIA---------- 118
Query: 182 HQENKMLKEQVEALIQ---ENMILKR 204
E+K++K+ + LI ENM L+R
Sbjct: 119 -DESKLVKDVITELIAKLGENMNLRR 143
>sp|C1FSK4|EFTS_CLOBJ Elongation factor Ts OS=Clostridium botulinum (strain Kyoto / Type
A2) GN=tsf PE=3 SV=1
Length = 307
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 31/146 (21%)
Query: 65 RALEECGDDLDSAIRSLNELRLGSADNNLGSVAGKSDLAADANAQGVATTNGEVPSPDDP 124
+AL EC DL+ A+ L E L +A G VA A+G+ +T S D
Sbjct: 23 KALTECDGDLEKAVEVLREKGLAAAAKKSGRVA----------AEGIVST---YISEDMK 69
Query: 125 SASKV---FQLDGPEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSF 181
+ S V + D ELFV E+ ++ + A + S A E+LE+ A
Sbjct: 70 NGSIVEFNCETDFVSVNELFV-ELANNLSKQAAFSNVSTAEELLEEKYIA---------- 118
Query: 182 HQENKMLKEQVEALIQ---ENMILKR 204
E+K++K+ + LI ENM L+R
Sbjct: 119 -DESKLVKDVITELIAKLGENMNLRR 143
>sp|A5I4L2|EFTS_CLOBH Elongation factor Ts OS=Clostridium botulinum (strain Hall / ATCC
3502 / NCTC 13319 / Type A) GN=tsf PE=3 SV=1
Length = 307
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 31/146 (21%)
Query: 65 RALEECGDDLDSAIRSLNELRLGSADNNLGSVAGKSDLAADANAQGVATTNGEVPSPDDP 124
+AL EC DL+ A+ L E L +A G VA A+G+ +T S D
Sbjct: 23 KALTECDGDLEKAVEVLREKGLAAAAKKSGRVA----------AEGIVST---YISEDMK 69
Query: 125 SASKV---FQLDGPEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSF 181
+ S V + D ELFV E+ ++ + A + S A E+LE+ A
Sbjct: 70 NGSIVEFNCETDFVSVNELFV-ELANNLSKQAAFSNVSTAEELLEEKYIA---------- 118
Query: 182 HQENKMLKEQVEALIQ---ENMILKR 204
E+K++K+ + LI ENM L+R
Sbjct: 119 -DESKLVKDVITELIAKLGENMNLRR 143
>sp|A7FPZ7|EFTS_CLOB1 Elongation factor Ts OS=Clostridium botulinum (strain ATCC 19397 /
Type A) GN=tsf PE=3 SV=1
Length = 307
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 31/146 (21%)
Query: 65 RALEECGDDLDSAIRSLNELRLGSADNNLGSVAGKSDLAADANAQGVATTNGEVPSPDDP 124
+AL EC DL+ A+ L E L +A G VA A+G+ +T S D
Sbjct: 23 KALTECDGDLEKAVEVLREKGLAAAAKKSGRVA----------AEGIVST---YISEDMK 69
Query: 125 SASKV---FQLDGPEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSF 181
+ S V + D ELFV E+ ++ + A + S A E+LE+ A
Sbjct: 70 NGSIVEFNCETDFVSVNELFV-ELANNLSKQAAFSNVSTAEELLEEKYIA---------- 118
Query: 182 HQENKMLKEQVEALIQ---ENMILKR 204
E+K++K+ + LI ENM L+R
Sbjct: 119 -DESKLVKDVITELIAKLGENMNLRR 143
>sp|Q9BR77|CCD77_HUMAN Coiled-coil domain-containing protein 77 OS=Homo sapiens GN=CCDC77
PE=2 SV=1
Length = 488
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 175 AEAAQS-FHQENKMLKEQVEALIQENMILKRAVSIQHER-QKEYEDRSQELHHLKQLV 230
EA Q+ ++ K+ +EQ+E LI++ I + +QH+R Q + ++ ++ LHH ++L+
Sbjct: 225 VEALQAQLGEQTKLSREQIEGLIEDRRIHLEEIQVQHQRNQNKIKELTKNLHHTQELL 282
>sp|Q0WSY2|FPP4_ARATH Filament-like plant protein 4 OS=Arabidopsis thaliana GN=FPP4 PE=2
SV=1
Length = 982
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLR 238
Q FH+EN +L E++ A+ +E +LK A++ R+ EL + L ++ +L+
Sbjct: 348 QKFHKENDLLTERLLAMEEETKMLKEALA----------KRNSELQVSRNLCAKTANRLQ 397
Query: 239 TLE 241
TLE
Sbjct: 398 TLE 400
>sp|C3L0D2|EFTS_CLOB6 Elongation factor Ts OS=Clostridium botulinum (strain 657 / Type
Ba4) GN=tsf PE=3 SV=1
Length = 307
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 31/146 (21%)
Query: 65 RALEECGDDLDSAIRSLNELRLGSADNNLGSVAGKSDLAADANAQGVATTNGEVPSPDDP 124
+AL EC DL+ A+ L E L +A G VA A+G+ +T S D
Sbjct: 23 KALTECDGDLEKAVEVLREKGLAAAAKKSGRVA----------AEGIVST---YISEDMK 69
Query: 125 SASKV---FQLDGPEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSF 181
+ S + + D ELFV E+ ++ + A + S A E+LE+ A
Sbjct: 70 NGSIIEFNCETDFVSVNELFV-ELANNLSKQAAFSNVSTAEELLEEKYIA---------- 118
Query: 182 HQENKMLKEQVEALIQ---ENMILKR 204
E+K++K+ + LI ENM L+R
Sbjct: 119 -DESKLVKDVITELIAKLGENMNLRR 143
>sp|Q9BXX2|AN30B_HUMAN Ankyrin repeat domain-containing protein 30B OS=Homo sapiens
GN=ANKRD30B PE=2 SV=3
Length = 1392
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKE----YEDRSQELH---HLKQLV--- 230
FH EN MLK+++ L E LK ++ + E ++++ EL LKQ
Sbjct: 1081 FH-ENCMLKKEIAMLKLEVATLKHQHQVKENKYFEDIKILQEKNAELQMTLKLKQKTVTK 1139
Query: 231 --SQYQEQLRTLEVNNYALTMHLKQAE 255
SQY+EQL+ L N LT LK+ +
Sbjct: 1140 RASQYREQLKVLTAENTMLTSKLKEKQ 1166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,182,744
Number of Sequences: 539616
Number of extensions: 3463569
Number of successful extensions: 13993
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 269
Number of HSP's that attempted gapping in prelim test: 13671
Number of HSP's gapped (non-prelim): 598
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)