Query 024305
Match_columns 269
No_of_seqs 67 out of 69
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 03:35:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14817 HAUS5: HAUS augmin-li 99.0 3.9E-09 8.5E-14 107.6 13.8 122 133-255 308-430 (632)
2 PF02845 CUE: CUE domain; Int 98.3 1.2E-06 2.5E-11 59.7 5.2 40 45-84 2-41 (42)
3 smart00546 CUE Domain that may 98.3 1.6E-06 3.4E-11 59.2 5.1 38 46-83 4-41 (43)
4 PF03474 DMA: DMRTA motif; In 97.5 0.00022 4.8E-09 49.4 4.8 35 47-81 4-38 (39)
5 COG3074 Uncharacterized protei 96.5 0.048 1E-06 42.7 10.1 68 161-240 5-72 (79)
6 PF00627 UBA: UBA/TS-N domain; 96.1 0.013 2.8E-07 38.8 4.6 35 45-81 3-37 (37)
7 PRK15422 septal ring assembly 95.8 0.16 3.6E-06 40.1 10.2 68 161-240 5-72 (79)
8 PF10205 KLRAQ: Predicted coil 94.5 0.31 6.7E-06 40.2 8.5 52 194-255 9-60 (102)
9 PF15619 Lebercilin: Ciliary p 94.3 0.97 2.1E-05 40.5 12.1 75 178-252 14-99 (194)
10 PF06005 DUF904: Protein of un 93.9 1 2.2E-05 34.7 9.8 62 160-240 4-65 (72)
11 cd00194 UBA Ubiquitin Associat 93.4 0.21 4.6E-06 32.5 4.7 35 46-82 3-37 (38)
12 PF09744 Jnk-SapK_ap_N: JNK_SA 93.4 2.1 4.6E-05 37.4 12.1 77 159-242 32-110 (158)
13 smart00165 UBA Ubiquitin assoc 93.3 0.22 4.8E-06 32.3 4.6 34 46-81 3-36 (37)
14 PF15058 Speriolin_N: Sperioli 92.4 0.19 4.1E-06 45.7 4.4 26 179-205 15-40 (200)
15 PF02403 Seryl_tRNA_N: Seryl-t 92.3 2.3 5E-05 33.6 10.1 88 162-249 11-102 (108)
16 PRK10884 SH3 domain-containing 92.1 2.8 6.1E-05 38.0 11.6 69 181-251 98-169 (206)
17 PRK09413 IS2 repressor TnpA; R 90.7 0.48 1E-05 38.6 4.7 34 179-212 74-107 (121)
18 PLN02678 seryl-tRNA synthetase 90.4 5.1 0.00011 40.3 12.5 82 178-268 35-116 (448)
19 PRK05431 seryl-tRNA synthetase 90.3 5 0.00011 39.7 12.3 75 177-251 29-103 (425)
20 PHA02047 phage lambda Rz1-like 90.1 2 4.4E-05 35.4 7.8 53 203-258 26-78 (101)
21 KOG4005 Transcription factor X 89.8 3.5 7.6E-05 39.1 10.1 65 170-235 76-152 (292)
22 TIGR00414 serS seryl-tRNA synt 89.1 7.1 0.00015 38.5 12.3 80 179-268 33-114 (418)
23 TIGR03495 phage_LysB phage lys 88.7 6.2 0.00013 34.0 10.2 68 181-249 28-96 (135)
24 PF05010 TACC: Transforming ac 88.6 17 0.00036 33.2 13.4 94 159-252 43-142 (207)
25 KOG1853 LIS1-interacting prote 88.2 4.4 9.6E-05 38.9 9.7 64 186-249 55-126 (333)
26 PF13747 DUF4164: Domain of un 87.9 12 0.00026 29.7 12.1 83 148-239 3-85 (89)
27 PF13851 GAS: Growth-arrest sp 87.3 19 0.00042 32.2 13.0 71 178-255 50-120 (201)
28 PF07058 Myosin_HC-like: Myosi 86.9 6 0.00013 38.7 10.0 72 179-255 3-86 (351)
29 PF10473 CENP-F_leu_zip: Leuci 86.6 8.4 0.00018 33.3 9.8 67 179-255 48-114 (140)
30 PF04111 APG6: Autophagy prote 86.4 21 0.00045 34.1 13.3 27 218-244 110-136 (314)
31 PF14555 UBA_4: UBA-like domai 84.7 2.1 4.6E-05 29.2 4.3 36 47-83 3-38 (43)
32 PLN02320 seryl-tRNA synthetase 83.6 16 0.00036 37.4 11.9 81 178-268 95-175 (502)
33 PF10226 DUF2216: Uncharacteri 83.6 6.7 0.00014 35.8 8.1 63 184-247 56-127 (195)
34 PRK13182 racA polar chromosome 83.6 19 0.00041 31.9 10.9 95 133-234 41-145 (175)
35 PF15058 Speriolin_N: Sperioli 83.3 2.8 6.2E-05 38.3 5.7 37 185-232 7-43 (200)
36 PRK11637 AmiB activator; Provi 83.1 48 0.001 32.4 16.4 9 145-153 145-153 (428)
37 PF11559 ADIP: Afadin- and alp 82.5 28 0.0006 29.2 13.3 100 151-252 43-150 (151)
38 PF10828 DUF2570: Protein of u 82.5 16 0.00036 29.6 9.4 64 178-244 27-90 (110)
39 KOG4588 Predicted ubiquitin-co 82.1 3.3 7.1E-05 39.1 5.7 32 54-85 1-32 (267)
40 KOG0241 Kinesin-like protein [ 81.9 7.6 0.00016 43.3 9.0 79 175-266 363-442 (1714)
41 PF11932 DUF3450: Protein of u 81.6 40 0.00088 30.6 12.6 50 176-225 49-98 (251)
42 TIGR03752 conj_TIGR03752 integ 81.5 16 0.00035 37.3 10.8 61 179-241 76-136 (472)
43 KOG0971 Microtubule-associated 81.2 49 0.0011 37.0 14.6 76 175-250 324-439 (1243)
44 PF10211 Ax_dynein_light: Axon 80.8 40 0.00088 29.9 14.6 67 185-253 122-188 (189)
45 TIGR03752 conj_TIGR03752 integ 78.9 14 0.00031 37.7 9.4 55 181-238 85-140 (472)
46 PRK09039 hypothetical protein; 78.4 41 0.00089 32.5 12.1 65 151-216 111-177 (343)
47 PRK03918 chromosome segregatio 78.3 93 0.002 32.6 16.8 31 141-171 150-180 (880)
48 PF07106 TBPIP: Tat binding pr 78.0 16 0.00034 31.2 8.3 67 175-242 71-137 (169)
49 COG4797 Predicted regulatory d 77.8 1.8 3.8E-05 41.1 2.6 25 51-75 4-29 (268)
50 PF11577 NEMO: NF-kappa-B esse 76.8 26 0.00056 26.9 8.2 56 188-243 4-67 (68)
51 PF07888 CALCOCO1: Calcium bin 76.0 34 0.00074 35.6 11.3 71 181-251 190-264 (546)
52 PF07926 TPR_MLP1_2: TPR/MLP1/ 75.8 45 0.00097 27.7 12.1 75 181-255 8-93 (132)
53 KOG4603 TBP-1 interacting prot 74.8 18 0.0004 32.9 8.0 57 177-241 80-143 (201)
54 PRK13922 rod shape-determining 74.7 52 0.0011 30.1 11.2 36 195-230 74-109 (276)
55 PF08317 Spc7: Spc7 kinetochor 74.1 82 0.0018 29.9 13.2 59 180-241 206-264 (325)
56 PRK02224 chromosome segregatio 74.1 1.2E+02 0.0027 32.0 16.7 63 179-241 209-271 (880)
57 COG3206 GumC Uncharacterized p 73.4 68 0.0015 31.5 12.4 83 160-243 320-402 (458)
58 COG4026 Uncharacterized protei 72.9 89 0.0019 29.8 12.6 76 172-251 118-200 (290)
59 PF10234 Cluap1: Clusterin-ass 72.4 58 0.0013 31.0 11.1 102 129-242 128-250 (267)
60 PHA02562 46 endonuclease subun 71.6 1.1E+02 0.0024 30.3 13.8 67 181-247 179-246 (562)
61 KOG0976 Rho/Rac1-interacting s 71.5 73 0.0016 35.4 12.7 91 160-250 298-408 (1265)
62 KOG0995 Centromere-associated 71.5 77 0.0017 33.4 12.6 66 179-244 297-362 (581)
63 CHL00098 tsf elongation factor 71.1 7.7 0.00017 35.1 4.9 43 46-89 3-45 (200)
64 PF02954 HTH_8: Bacterial regu 70.1 3.6 7.8E-05 27.8 2.0 25 58-82 5-29 (42)
65 PF05769 DUF837: Protein of un 69.2 49 0.0011 29.4 9.5 56 181-237 29-93 (181)
66 PF02341 RcbX: RbcX protein; 68.9 22 0.00047 29.8 6.7 30 129-167 48-77 (111)
67 PF08614 ATG16: Autophagy prot 67.8 70 0.0015 28.1 10.1 78 159-248 101-178 (194)
68 PF06810 Phage_GP20: Phage min 67.7 56 0.0012 28.3 9.3 66 182-255 26-95 (155)
69 PRK12332 tsf elongation factor 67.6 10 0.00022 34.3 4.8 44 45-89 5-48 (198)
70 KOG4360 Uncharacterized coiled 67.6 1.3E+02 0.0028 31.6 13.1 111 152-267 208-324 (596)
71 PF11488 Lge1: Transcriptional 67.3 26 0.00056 27.1 6.5 48 209-256 25-72 (80)
72 TIGR00219 mreC rod shape-deter 67.2 16 0.00034 34.3 6.2 40 178-230 68-107 (283)
73 PF07334 IFP_35_N: Interferon- 67.0 11 0.00024 29.7 4.3 30 179-208 3-32 (76)
74 PF01166 TSC22: TSC-22/dip/bun 66.4 8.2 0.00018 29.2 3.3 28 177-204 15-42 (59)
75 PF09744 Jnk-SapK_ap_N: JNK_SA 65.6 73 0.0016 28.0 9.6 63 179-241 85-148 (158)
76 PF12325 TMF_TATA_bd: TATA ele 65.3 83 0.0018 26.4 11.1 19 184-202 31-49 (120)
77 PF07888 CALCOCO1: Calcium bin 65.1 1.1E+02 0.0023 32.2 12.1 19 11-31 8-26 (546)
78 PF10186 Atg14: UV radiation r 64.5 1.1E+02 0.0023 27.4 11.4 34 181-214 61-94 (302)
79 PF05055 DUF677: Protein of un 63.6 1.1E+02 0.0024 29.8 11.4 77 178-254 252-328 (336)
80 smart00787 Spc7 Spc7 kinetocho 63.1 1.5E+02 0.0032 28.6 13.3 58 182-242 203-260 (312)
81 PRK13729 conjugal transfer pil 62.9 42 0.00092 34.4 8.7 22 182-203 75-96 (475)
82 PRK06369 nac nascent polypepti 62.8 10 0.00022 31.9 3.6 35 48-83 80-114 (115)
83 PF10506 MCC-bdg_PDZ: PDZ doma 62.7 68 0.0015 24.6 8.5 60 187-247 2-65 (67)
84 PF06156 DUF972: Protein of un 62.2 31 0.00066 28.4 6.3 26 179-204 18-43 (107)
85 PF04111 APG6: Autophagy prote 61.9 1.5E+02 0.0033 28.3 12.8 78 181-258 55-136 (314)
86 TIGR00219 mreC rod shape-deter 61.9 22 0.00047 33.4 6.1 15 195-209 96-110 (283)
87 KOG0804 Cytoplasmic Zn-finger 61.7 1.1E+02 0.0025 31.5 11.3 27 225-251 425-451 (493)
88 PRK10884 SH3 domain-containing 61.5 85 0.0018 28.5 9.6 27 216-242 141-167 (206)
89 PF07989 Microtub_assoc: Micro 61.1 75 0.0016 24.6 8.2 22 221-242 50-71 (75)
90 PRK13169 DNA replication intia 61.1 32 0.0007 28.6 6.3 27 178-204 17-43 (110)
91 KOG3647 Predicted coiled-coil 60.9 1.2E+02 0.0026 29.7 10.7 63 129-197 71-133 (338)
92 PF06005 DUF904: Protein of un 60.9 59 0.0013 25.0 7.3 26 178-203 27-52 (72)
93 KOG2264 Exostosin EXT1L [Signa 60.3 59 0.0013 34.8 9.3 73 140-244 79-151 (907)
94 PF05300 DUF737: Protein of un 59.8 1.1E+02 0.0024 27.7 9.9 21 225-245 145-165 (187)
95 KOG0989 Replication factor C, 59.7 1.8E+02 0.0039 28.9 12.0 58 26-88 177-238 (346)
96 TIGR00116 tsf translation elon 59.6 8.1 0.00017 36.9 2.9 43 46-89 6-48 (290)
97 PF09726 Macoilin: Transmembra 59.6 1.5E+02 0.0033 31.6 12.4 32 219-250 550-581 (697)
98 KOG4797 Transcriptional regula 59.4 28 0.0006 29.6 5.6 35 172-206 63-97 (123)
99 PF04849 HAP1_N: HAP1 N-termin 59.1 1.6E+02 0.0035 28.7 11.4 22 59-80 63-84 (306)
100 PRK09377 tsf elongation factor 58.8 8 0.00017 36.9 2.7 43 46-89 7-49 (290)
101 KOG3119 Basic region leucine z 58.8 33 0.0007 32.1 6.6 26 181-206 227-252 (269)
102 TIGR00264 alpha-NAC-related pr 58.8 13 0.00027 31.5 3.5 26 57-82 90-115 (116)
103 PF01166 TSC22: TSC-22/dip/bun 58.6 18 0.00039 27.4 4.0 31 221-251 14-44 (59)
104 PF10267 Tmemb_cc2: Predicted 58.6 88 0.0019 31.3 9.9 37 202-244 49-85 (395)
105 PF13851 GAS: Growth-arrest sp 58.4 1.4E+02 0.003 26.8 14.0 62 178-239 64-125 (201)
106 PF15070 GOLGA2L5: Putative go 58.3 1.5E+02 0.0032 31.3 11.9 40 179-218 90-129 (617)
107 PRK13922 rod shape-determining 57.5 1.2E+02 0.0025 27.8 9.9 35 179-214 72-106 (276)
108 PHA02562 46 endonuclease subun 56.5 1.5E+02 0.0034 29.2 11.3 86 151-237 260-353 (562)
109 PRK15354 type III secretion sy 56.3 1.8E+02 0.0038 27.3 11.4 39 131-169 19-65 (224)
110 PF10046 BLOC1_2: Biogenesis o 56.2 1E+02 0.0022 24.6 13.3 51 202-252 40-90 (99)
111 PF13097 CENP-U: CENP-A nucleo 55.8 75 0.0016 28.7 8.1 49 150-205 102-157 (175)
112 PF04803 Cor1: Cor1/Xlr/Xmr co 55.7 1E+02 0.0023 26.2 8.6 41 197-247 75-115 (130)
113 PF05911 DUF869: Plant protein 55.6 3E+02 0.0065 30.0 13.8 69 181-252 90-158 (769)
114 KOG0977 Nuclear envelope prote 55.3 2.3E+02 0.0049 29.8 12.5 39 217-255 151-189 (546)
115 KOG4343 bZIP transcription fac 55.1 20 0.00044 37.5 5.0 55 161-215 279-334 (655)
116 PRK14872 rod shape-determining 54.7 31 0.00066 33.8 5.9 20 179-198 60-79 (337)
117 KOG0612 Rho-associated, coiled 54.3 1.9E+02 0.0041 33.3 12.3 74 181-255 463-542 (1317)
118 PF09789 DUF2353: Uncharacteri 54.2 50 0.0011 32.2 7.2 31 179-209 82-112 (319)
119 KOG0978 E3 ubiquitin ligase in 54.2 3.2E+02 0.0069 29.6 14.2 81 185-265 50-134 (698)
120 smart00804 TAP_C C-terminal do 54.0 23 0.0005 26.6 4.0 34 53-86 20-53 (63)
121 TIGR02449 conserved hypothetic 53.4 57 0.0012 25.0 6.0 23 181-203 19-41 (65)
122 PF12805 FUSC-like: FUSC-like 53.3 60 0.0013 29.8 7.4 76 160-236 180-258 (284)
123 TIGR01837 PHA_granule_1 poly(h 51.7 55 0.0012 27.1 6.2 32 133-166 23-54 (118)
124 KOG0250 DNA repair protein RAD 51.6 3E+02 0.0066 31.2 13.3 59 181-243 406-465 (1074)
125 TIGR01834 PHA_synth_III_E poly 50.7 2.5E+02 0.0055 27.5 13.6 29 215-243 290-318 (320)
126 PF07445 priB_priC: Primosomal 50.6 26 0.00055 30.8 4.3 63 192-254 72-135 (173)
127 PF08614 ATG16: Autophagy prot 50.6 46 0.001 29.2 5.9 60 182-244 87-146 (194)
128 PF10174 Cast: RIM-binding pro 50.2 3.4E+02 0.0075 29.6 13.3 62 135-198 401-487 (775)
129 KOG4286 Dystrophin-like protei 50.2 43 0.00093 36.6 6.5 56 201-256 192-248 (966)
130 COG2433 Uncharacterized conser 50.2 2.9E+02 0.0062 29.7 12.3 43 200-242 460-502 (652)
131 cd07429 Cby_like Chibby, a nuc 50.0 20 0.00044 29.9 3.4 20 180-199 83-102 (108)
132 KOG0977 Nuclear envelope prote 49.5 51 0.0011 34.4 6.8 46 207-256 32-77 (546)
133 PF10211 Ax_dynein_light: Axon 49.4 1.5E+02 0.0033 26.3 9.0 57 181-239 132-188 (189)
134 PF05911 DUF869: Plant protein 49.4 80 0.0017 34.2 8.5 58 177-244 252-309 (769)
135 COG5296 Transcription factor i 49.4 29 0.00064 35.3 5.0 53 186-246 350-402 (521)
136 COG5185 HEC1 Protein involved 48.5 1.4E+02 0.0031 31.2 9.7 90 142-231 290-385 (622)
137 TIGR03319 YmdA_YtgF conserved 48.5 3.2E+02 0.007 28.0 15.6 13 151-163 27-39 (514)
138 COG2433 Uncharacterized conser 48.3 3.3E+02 0.0071 29.3 12.4 26 181-206 420-445 (652)
139 PF09311 Rab5-bind: Rabaptin-l 47.8 19 0.0004 31.6 3.0 65 177-241 16-84 (181)
140 KOG0804 Cytoplasmic Zn-finger 47.8 3.4E+02 0.0074 28.2 12.8 76 159-240 370-447 (493)
141 PF14988 DUF4515: Domain of un 47.5 1.7E+02 0.0037 26.5 9.2 41 162-203 143-183 (206)
142 COG1308 EGD2 Transcription fac 47.4 23 0.00049 30.3 3.3 24 59-82 98-121 (122)
143 PF03962 Mnd1: Mnd1 family; I 46.7 2.1E+02 0.0045 25.5 9.5 33 222-254 136-168 (188)
144 PF06364 DUF1068: Protein of u 46.6 88 0.0019 28.3 7.0 43 188-235 82-124 (176)
145 PF11544 Spc42p: Spindle pole 46.5 1.5E+02 0.0032 23.6 8.0 54 194-250 2-55 (76)
146 PF09006 Surfac_D-trimer: Lung 46.4 44 0.00095 24.2 4.2 24 186-209 2-25 (46)
147 PRK11091 aerobic respiration c 46.3 3.5E+02 0.0076 27.9 12.7 22 150-171 79-100 (779)
148 PF01486 K-box: K-box region; 45.8 85 0.0018 24.7 6.2 45 162-206 51-98 (100)
149 PF13870 DUF4201: Domain of un 45.7 2E+02 0.0042 24.7 11.2 72 179-251 45-121 (177)
150 PF05597 Phasin: Poly(hydroxya 45.6 1.2E+02 0.0027 25.8 7.6 44 132-175 35-98 (132)
151 PF06156 DUF972: Protein of un 45.2 86 0.0019 25.8 6.3 39 218-256 19-57 (107)
152 PF12128 DUF3584: Protein of u 45.0 4.5E+02 0.0098 29.6 13.6 32 221-252 469-500 (1201)
153 TIGR03007 pepcterm_ChnLen poly 45.0 3.1E+02 0.0068 26.9 11.4 25 62-86 165-189 (498)
154 PRK03918 chromosome segregatio 44.9 4E+02 0.0086 28.1 14.5 15 41-55 33-48 (880)
155 PF03962 Mnd1: Mnd1 family; I 44.6 2.3E+02 0.0049 25.2 11.0 85 151-242 78-163 (188)
156 PRK11459 multidrug resistance 44.5 3.2E+02 0.0069 26.9 14.3 107 149-257 368-474 (478)
157 COG4467 Regulator of replicati 44.3 37 0.00081 28.7 4.1 27 177-203 16-42 (114)
158 PF09728 Taxilin: Myosin-like 44.2 2.3E+02 0.0051 27.1 10.0 63 177-242 238-300 (309)
159 KOG3850 Predicted membrane pro 44.0 1.5E+02 0.0033 30.2 8.9 36 200-241 83-118 (455)
160 PF13118 DUF3972: Protein of u 44.0 1.4E+02 0.0031 25.6 7.6 18 190-207 85-102 (126)
161 KOG1071 Mitochondrial translat 43.7 21 0.00046 35.0 3.0 41 45-86 47-87 (340)
162 TIGR01837 PHA_granule_1 poly(h 43.7 1.9E+02 0.004 23.9 10.3 24 151-174 61-84 (118)
163 TIGR01005 eps_transp_fam exopo 43.6 3.1E+02 0.0067 28.7 11.5 22 63-84 199-220 (754)
164 PF11180 DUF2968: Protein of u 43.6 2.6E+02 0.0057 25.6 13.4 21 156-176 84-104 (192)
165 cd07685 F-BAR_Fes The F-BAR (F 43.2 2.9E+02 0.0064 26.1 12.6 50 190-242 98-149 (237)
166 PLN02939 transferase, transfer 43.2 3E+02 0.0066 30.9 11.7 26 188-213 224-249 (977)
167 PF03961 DUF342: Protein of un 43.1 2.1E+02 0.0046 28.3 9.8 34 221-254 375-408 (451)
168 KOG4571 Activating transcripti 42.6 43 0.00093 32.5 4.8 36 187-232 252-287 (294)
169 PF12958 DUF3847: Protein of u 42.1 42 0.00091 26.9 3.9 33 215-247 2-34 (86)
170 TIGR03185 DNA_S_dndD DNA sulfu 41.7 4.2E+02 0.0092 27.5 14.1 19 37-55 34-52 (650)
171 KOG2991 Splicing regulator [RN 41.6 1.6E+02 0.0036 28.6 8.4 66 172-240 104-169 (330)
172 PLN03025 replication factor C 41.5 56 0.0012 30.4 5.3 56 26-86 147-206 (319)
173 KOG2891 Surface glycoprotein [ 41.5 3.7E+02 0.0079 26.7 12.5 82 156-241 322-420 (445)
174 PRK10920 putative uroporphyrin 41.5 3.3E+02 0.0071 27.2 10.8 20 180-199 64-83 (390)
175 PF03961 DUF342: Protein of un 41.5 2.2E+02 0.0048 28.1 9.7 26 218-243 379-404 (451)
176 PF10267 Tmemb_cc2: Predicted 41.3 2.1E+02 0.0046 28.7 9.5 48 191-241 270-318 (395)
177 PF14645 Chibby: Chibby family 40.9 32 0.0007 28.6 3.3 28 181-208 69-96 (116)
178 PF04102 SlyX: SlyX; InterPro 40.9 1.2E+02 0.0026 22.8 6.0 34 222-255 19-52 (69)
179 PRK11166 chemotaxis regulator 40.0 2E+02 0.0043 26.6 8.5 52 146-197 43-99 (214)
180 KOG4343 bZIP transcription fac 39.8 99 0.0021 32.7 7.1 47 155-203 297-343 (655)
181 PF07851 TMPIT: TMPIT-like pro 39.4 3E+02 0.0064 27.1 10.0 67 177-246 12-79 (330)
182 PF09787 Golgin_A5: Golgin sub 39.4 2.8E+02 0.0061 28.1 10.2 57 150-206 236-297 (511)
183 KOG2129 Uncharacterized conser 39.3 2E+02 0.0043 29.8 9.0 13 223-235 145-157 (552)
184 PRK00106 hypothetical protein; 39.1 4.7E+02 0.01 27.3 15.7 12 152-163 49-60 (535)
185 PF03943 TAP_C: TAP C-terminal 39.0 13 0.00028 26.6 0.6 30 57-86 12-41 (51)
186 PF07989 Microtub_assoc: Micro 38.8 82 0.0018 24.4 5.0 61 177-237 8-73 (75)
187 KOG2264 Exostosin EXT1L [Signa 38.5 3.4E+02 0.0073 29.4 10.7 48 211-258 104-151 (907)
188 PF15254 CCDC14: Coiled-coil d 38.4 2.4E+02 0.0053 31.1 9.9 33 221-253 501-533 (861)
189 TIGR00606 rad50 rad50. This fa 38.1 5.3E+02 0.011 29.3 12.9 30 222-251 889-918 (1311)
190 PF04880 NUDE_C: NUDE protein, 38.1 40 0.00086 30.0 3.6 30 203-239 26-55 (166)
191 COG1196 Smc Chromosome segrega 37.5 6.3E+02 0.014 28.3 15.2 24 220-243 473-496 (1163)
192 PRK14950 DNA polymerase III su 37.3 4.8E+02 0.01 26.9 13.0 43 45-87 182-228 (585)
193 PRK13729 conjugal transfer pil 37.1 1.9E+02 0.0041 29.9 8.6 13 133-145 53-65 (475)
194 COG1792 MreC Cell shape-determ 36.3 1E+02 0.0022 29.1 6.2 19 212-230 88-106 (284)
195 PRK14011 prefoldin subunit alp 35.1 58 0.0013 28.1 4.0 27 215-241 18-44 (144)
196 PF07926 TPR_MLP1_2: TPR/MLP1/ 34.9 2.6E+02 0.0057 23.1 14.2 89 157-251 39-128 (132)
197 PRK05564 DNA polymerase III su 34.9 59 0.0013 30.1 4.3 53 26-83 141-193 (313)
198 KOG4643 Uncharacterized coiled 34.7 7.2E+02 0.016 28.6 12.8 39 189-227 456-494 (1195)
199 KOG3856 Uncharacterized conser 34.7 86 0.0019 27.2 4.9 35 214-248 10-44 (135)
200 KOG0161 Myosin class II heavy 34.6 9.3E+02 0.02 29.4 15.1 86 131-218 1356-1442(1930)
201 COG1938 Archaeal enzymes of AT 34.6 60 0.0013 30.6 4.3 44 150-197 182-225 (244)
202 KOG2273 Membrane coat complex 34.4 4.8E+02 0.01 26.0 13.3 73 181-253 354-435 (503)
203 TIGR02894 DNA_bind_RsfA transc 34.4 2.1E+02 0.0046 25.5 7.5 22 181-202 102-123 (161)
204 PF15070 GOLGA2L5: Putative go 34.0 5.8E+02 0.013 27.1 11.7 71 185-255 162-243 (617)
205 PF05384 DegS: Sensor protein 34.0 2E+02 0.0043 25.4 7.2 49 206-254 19-67 (159)
206 PF06008 Laminin_I: Laminin Do 34.0 3.7E+02 0.008 24.5 12.9 108 138-255 132-247 (264)
207 PF14662 CCDC155: Coiled-coil 33.9 3.8E+02 0.0082 24.6 11.1 77 178-254 104-191 (193)
208 PRK04195 replication factor C 33.9 65 0.0014 32.0 4.7 50 34-85 154-207 (482)
209 TIGR03017 EpsF chain length de 33.7 4.4E+02 0.0095 25.4 13.5 23 63-85 176-198 (444)
210 PRK13169 DNA replication intia 33.7 1.7E+02 0.0036 24.4 6.3 36 219-254 20-55 (110)
211 PF00170 bZIP_1: bZIP transcri 33.4 1.9E+02 0.004 20.9 8.4 30 219-248 31-60 (64)
212 PF12999 PRKCSH-like: Glucosid 33.0 3.3E+02 0.0072 24.5 8.6 13 229-241 161-173 (176)
213 PF15254 CCDC14: Coiled-coil d 33.0 2.3E+02 0.005 31.2 8.7 100 137-241 338-451 (861)
214 KOG1840 Kinesin light chain [C 32.9 3.8E+02 0.0082 27.7 10.0 91 148-240 296-390 (508)
215 PF05622 HOOK: HOOK protein; 32.9 15 0.00031 38.5 0.0 10 150-159 261-270 (713)
216 PHA02047 phage lambda Rz1-like 32.8 1.9E+02 0.0041 24.1 6.4 32 181-212 32-63 (101)
217 KOG4196 bZIP transcription fac 32.8 79 0.0017 27.5 4.4 29 176-204 74-102 (135)
218 KOG4421 Uncharacterized conser 32.7 1.3E+02 0.0027 30.9 6.4 59 179-254 18-76 (637)
219 KOG4571 Activating transcripti 32.7 3.4E+02 0.0073 26.5 9.1 35 178-212 257-292 (294)
220 KOG4552 Vitamin-D-receptor int 32.5 3E+02 0.0065 26.1 8.4 81 163-243 3-96 (272)
221 PF15463 ECM11: Extracellular 32.5 1.8E+02 0.0038 24.5 6.5 60 133-197 70-133 (139)
222 KOG4674 Uncharacterized conser 32.3 7.5E+02 0.016 29.9 13.1 65 177-251 655-719 (1822)
223 PRK00846 hypothetical protein; 32.2 2.5E+02 0.0055 22.1 7.7 36 223-258 29-64 (77)
224 PRK04863 mukB cell division pr 32.1 9E+02 0.02 28.5 14.0 33 219-251 388-420 (1486)
225 PRK04406 hypothetical protein; 32.1 2.4E+02 0.0052 21.8 7.9 35 222-256 26-60 (75)
226 KOG0161 Myosin class II heavy 31.8 8.5E+02 0.018 29.7 13.5 68 181-251 1489-1556(1930)
227 COG0264 Tsf Translation elonga 31.8 39 0.00085 32.7 2.7 29 63-91 23-51 (296)
228 PF09730 BicD: Microtubule-ass 31.7 2.2E+02 0.0048 30.8 8.4 55 184-248 266-320 (717)
229 KOG2077 JNK/SAPK-associated pr 31.5 4.3E+02 0.0093 28.6 10.1 73 178-254 303-376 (832)
230 PF04380 BMFP: Membrane fusoge 31.4 2.4E+02 0.0053 21.7 8.4 29 214-242 50-78 (79)
231 KOG1937 Uncharacterized conser 31.4 1.7E+02 0.0036 30.4 7.1 75 178-252 412-500 (521)
232 PF12777 MT: Microtubule-bindi 31.4 4.1E+02 0.0088 25.4 9.5 127 135-266 200-329 (344)
233 TIGR01730 RND_mfp RND family e 31.2 2.5E+02 0.0055 25.1 7.7 17 223-239 111-127 (322)
234 KOG2751 Beclin-like protein [S 31.0 3.1E+02 0.0068 28.2 8.9 67 187-253 147-215 (447)
235 KOG2561 Adaptor protein NUB1, 31.0 2.8E+02 0.0061 29.0 8.6 37 45-83 430-466 (568)
236 PF10226 DUF2216: Uncharacteri 30.9 3E+02 0.0064 25.4 7.9 56 151-207 81-139 (195)
237 PF12718 Tropomyosin_1: Tropom 30.8 3.4E+02 0.0073 23.1 9.7 65 176-240 35-99 (143)
238 COG1196 Smc Chromosome segrega 30.7 8.1E+02 0.018 27.5 15.1 24 61-84 607-632 (1163)
239 PF12711 Kinesin-relat_1: Kine 30.6 2.9E+02 0.0062 22.2 7.9 35 179-217 27-67 (86)
240 PF09340 NuA4: Histone acetylt 30.5 94 0.002 24.2 4.2 37 222-258 3-40 (80)
241 cd07429 Cby_like Chibby, a nuc 30.4 60 0.0013 27.1 3.2 25 181-205 70-94 (108)
242 PF14193 DUF4315: Domain of un 30.4 1E+02 0.0022 24.5 4.4 44 208-256 19-62 (83)
243 PF06818 Fez1: Fez1; InterPro 30.4 4.3E+02 0.0094 24.4 9.0 71 184-254 32-106 (202)
244 PRK04863 mukB cell division pr 30.1 9.7E+02 0.021 28.2 15.4 35 184-218 384-418 (1486)
245 PRK04325 hypothetical protein; 29.9 2.6E+02 0.0055 21.4 7.3 34 222-255 24-57 (74)
246 PRK02793 phi X174 lysis protei 29.8 2.5E+02 0.0055 21.4 7.8 36 222-257 23-58 (72)
247 PF10186 Atg14: UV radiation r 29.7 4.1E+02 0.0088 23.7 15.3 27 181-207 82-108 (302)
248 KOG0996 Structural maintenance 29.7 9.5E+02 0.021 28.0 15.1 54 201-255 850-905 (1293)
249 PRK09458 pspB phage shock prot 29.5 1E+02 0.0022 24.3 4.2 23 220-242 41-63 (75)
250 PF08172 CASP_C: CASP C termin 29.4 1.8E+02 0.0038 27.2 6.5 49 204-252 82-131 (248)
251 PRK14954 DNA polymerase III su 29.4 7E+02 0.015 26.4 11.9 52 34-87 180-235 (620)
252 PF04375 HemX: HemX; InterPro 29.2 5.4E+02 0.012 25.0 10.7 24 219-242 98-121 (372)
253 PF10481 CENP-F_N: Cenp-F N-te 28.9 5.6E+02 0.012 25.1 11.2 44 215-258 89-132 (307)
254 TIGR01730 RND_mfp RND family e 28.8 4.2E+02 0.0092 23.6 8.9 16 223-238 104-119 (322)
255 PF15035 Rootletin: Ciliary ro 28.6 4.1E+02 0.0088 23.7 8.4 26 181-206 79-104 (182)
256 PRK02119 hypothetical protein; 28.5 2.7E+02 0.0059 21.3 7.8 36 222-257 24-59 (73)
257 PF05557 MAD: Mitotic checkpoi 28.5 1.8E+02 0.004 30.5 7.1 24 219-242 604-627 (722)
258 PRK10929 putative mechanosensi 28.5 5.4E+02 0.012 29.3 11.0 67 188-256 213-279 (1109)
259 PF06632 XRCC4: DNA double-str 28.5 5.8E+02 0.013 25.1 11.9 49 181-236 156-209 (342)
260 KOG0250 DNA repair protein RAD 28.5 9.4E+02 0.02 27.6 14.1 75 177-251 236-318 (1074)
261 PF07544 Med9: RNA polymerase 28.5 1.4E+02 0.003 23.2 4.8 54 181-237 26-82 (83)
262 TIGR02894 DNA_bind_RsfA transc 28.3 2.8E+02 0.006 24.8 7.2 25 179-203 107-131 (161)
263 PF11336 DUF3138: Protein of u 28.3 1.1E+02 0.0023 31.7 5.1 61 183-243 25-105 (514)
264 PF07361 Cytochrom_B562: Cytoc 28.0 3.2E+02 0.007 22.0 8.8 88 143-237 15-102 (103)
265 PRK09112 DNA polymerase III su 27.9 81 0.0018 30.5 4.2 55 24-83 187-243 (351)
266 PF14662 CCDC155: Coiled-coil 27.9 4.8E+02 0.01 24.0 10.9 25 218-242 64-88 (193)
267 KOG0447 Dynamin-like GTP bindi 27.9 2.9E+02 0.0062 30.0 8.2 17 190-206 251-267 (980)
268 PF01008 IF-2B: Initiation fac 27.9 3.8E+02 0.0083 24.3 8.3 52 153-208 4-58 (282)
269 KOG4603 TBP-1 interacting prot 27.7 1.3E+02 0.0027 27.7 5.0 70 174-243 25-101 (201)
270 KOG3119 Basic region leucine z 27.6 3.6E+02 0.0077 25.3 8.2 38 219-256 220-257 (269)
271 PF07200 Mod_r: Modifier of ru 27.6 3.5E+02 0.0077 22.3 10.4 21 179-199 30-50 (150)
272 PF06637 PV-1: PV-1 protein (P 27.6 6.8E+02 0.015 25.6 12.2 25 239-264 378-402 (442)
273 PF09738 DUF2051: Double stran 27.5 5.7E+02 0.012 24.7 13.2 84 155-241 83-167 (302)
274 PF06034 DUF919: Nucleopolyhed 27.4 2.8E+02 0.0061 21.1 6.1 42 187-230 5-47 (62)
275 PF07139 DUF1387: Protein of u 27.4 6E+02 0.013 24.9 9.9 47 164-217 154-202 (302)
276 PHA03162 hypothetical protein; 27.4 98 0.0021 27.0 4.1 34 230-263 15-48 (135)
277 COG4567 Response regulator con 27.4 65 0.0014 29.1 3.1 25 61-85 145-169 (182)
278 PF04003 Utp12: Dip2/Utp12 Fam 27.2 2.9E+02 0.0064 21.3 7.9 54 200-253 54-109 (110)
279 PRK10803 tol-pal system protei 27.1 4.4E+02 0.0095 24.5 8.7 12 163-174 43-54 (263)
280 TIGR01069 mutS2 MutS2 family p 27.1 8.2E+02 0.018 26.4 13.8 6 157-162 501-506 (771)
281 TIGR02976 phageshock_pspB phag 26.9 1.2E+02 0.0027 23.6 4.2 23 220-242 41-63 (75)
282 PF04012 PspA_IM30: PspA/IM30 26.8 4.4E+02 0.0095 23.1 14.1 21 221-241 112-132 (221)
283 PRK04132 replication factor C 26.7 69 0.0015 35.0 3.7 58 24-86 676-737 (846)
284 PRK05707 DNA polymerase III su 26.6 96 0.0021 29.6 4.3 53 24-81 152-204 (328)
285 PRK00888 ftsB cell division pr 26.5 2.6E+02 0.0056 22.7 6.3 21 221-241 41-61 (105)
286 PF10392 COG5: Golgi transport 26.3 3.7E+02 0.0081 22.2 13.3 77 139-215 11-104 (132)
287 PRK09087 hypothetical protein; 26.1 69 0.0015 28.7 3.2 58 26-85 139-200 (226)
288 PF07412 Geminin: Geminin; In 26.0 1.8E+02 0.0039 26.8 5.8 36 167-203 110-145 (200)
289 PF10779 XhlA: Haemolysin XhlA 25.9 2.4E+02 0.0053 21.0 5.6 28 223-250 8-35 (71)
290 KOG0976 Rho/Rac1-interacting s 25.8 9.7E+02 0.021 27.2 11.8 24 219-242 118-141 (1265)
291 PRK14872 rod shape-determining 25.3 3.1E+02 0.0067 27.0 7.6 43 191-233 58-100 (337)
292 PF00170 bZIP_1: bZIP transcri 25.2 2.7E+02 0.0058 20.1 7.3 21 184-204 27-47 (64)
293 PRK12704 phosphodiesterase; Pr 25.1 7.7E+02 0.017 25.4 15.6 12 152-163 34-45 (520)
294 COG5281 Phage-related minor ta 25.0 5E+02 0.011 28.8 9.6 33 205-240 528-560 (833)
295 PF11180 DUF2968: Protein of u 24.8 5.5E+02 0.012 23.6 10.5 34 209-242 149-182 (192)
296 KOG0447 Dynamin-like GTP bindi 24.7 2E+02 0.0042 31.2 6.4 68 157-233 203-270 (980)
297 PRK12402 replication factor C 24.6 1.1E+02 0.0023 27.8 4.1 49 35-85 179-231 (337)
298 PF06120 Phage_HK97_TLTM: Tail 24.4 5.7E+02 0.012 24.8 9.1 87 135-225 58-162 (301)
299 PF08657 DASH_Spc34: DASH comp 24.3 5.9E+02 0.013 24.0 9.0 53 160-212 161-216 (259)
300 PF06810 Phage_GP20: Phage min 24.1 4.5E+02 0.0098 22.7 7.7 51 188-238 18-68 (155)
301 KOG4077 Cytochrome c oxidase, 24.1 76 0.0016 27.9 2.8 27 59-85 83-111 (149)
302 PF05812 Herpes_BLRF2: Herpesv 24.0 1.1E+02 0.0024 26.1 3.7 22 186-207 6-27 (118)
303 PF11236 DUF3037: Protein of u 24.0 83 0.0018 25.8 3.0 23 49-71 39-61 (118)
304 PF14257 DUF4349: Domain of un 23.9 4.6E+02 0.01 23.7 8.1 16 72-87 59-74 (262)
305 PF15188 CCDC-167: Coiled-coil 23.9 3.6E+02 0.0078 21.6 6.5 65 181-245 3-67 (85)
306 PF02268 TFIIA_gamma_N: Transc 23.9 77 0.0017 23.0 2.4 27 143-171 20-46 (49)
307 PF13870 DUF4201: Domain of un 23.9 4.6E+02 0.01 22.4 10.5 30 214-243 145-174 (177)
308 PRK00106 hypothetical protein; 23.8 8.5E+02 0.018 25.5 14.1 8 155-162 41-48 (535)
309 PF10241 KxDL: Uncharacterized 23.8 3.3E+02 0.007 21.3 6.2 21 221-241 57-77 (88)
310 COG2959 HemX Uncharacterized e 23.6 7.1E+02 0.015 25.3 9.8 58 184-241 64-124 (391)
311 PRK09609 hypothetical protein; 23.6 2.1E+02 0.0046 28.0 6.1 24 223-246 140-163 (312)
312 PRK14127 cell division protein 23.5 3.1E+02 0.0068 22.8 6.3 20 222-241 52-71 (109)
313 COG3143 CheZ Chemotaxis protei 23.4 3.8E+02 0.0082 25.0 7.3 47 148-195 48-100 (217)
314 PF07111 HCR: Alpha helical co 23.4 1E+03 0.022 26.2 11.6 76 179-256 474-556 (739)
315 PF06972 DUF1296: Protein of u 23.2 2.2E+02 0.0047 21.7 4.8 38 47-84 8-45 (60)
316 COG3009 Uncharacterized protei 23.2 12 0.00026 34.1 -2.3 48 194-241 139-190 (190)
317 PF14775 NYD-SP28_assoc: Sperm 23.0 3.2E+02 0.0069 20.2 5.8 14 220-233 46-59 (60)
318 COG4026 Uncharacterized protei 23.0 2.8E+02 0.0061 26.6 6.5 41 212-252 147-187 (290)
319 COG1792 MreC Cell shape-determ 23.0 5.1E+02 0.011 24.5 8.4 53 203-255 55-110 (284)
320 PRK10361 DNA recombination pro 22.9 8.6E+02 0.019 25.2 11.4 12 187-198 64-75 (475)
321 PRK05896 DNA polymerase III su 22.9 1.2E+02 0.0027 31.9 4.6 58 26-88 167-228 (605)
322 PF13863 DUF4200: Domain of un 22.9 3.9E+02 0.0085 21.2 8.9 30 211-240 78-107 (126)
323 PF13428 TPR_14: Tetratricopep 22.8 1.2E+02 0.0025 19.9 3.0 22 62-84 6-27 (44)
324 PF15372 DUF4600: Domain of un 22.6 3.8E+02 0.0082 23.2 6.7 62 179-249 18-81 (129)
325 TIGR02168 SMC_prok_B chromosom 22.5 9.5E+02 0.021 25.6 14.8 14 73-86 630-643 (1179)
326 PF04977 DivIC: Septum formati 22.5 3E+02 0.0066 19.8 5.6 25 216-240 26-50 (80)
327 PF11932 DUF3450: Protein of u 22.5 5.8E+02 0.013 23.1 13.6 65 177-251 43-107 (251)
328 PRK10803 tol-pal system protei 22.3 4.3E+02 0.0093 24.5 7.7 51 151-203 38-88 (263)
329 TIGR03007 pepcterm_ChnLen poly 22.3 7.1E+02 0.015 24.5 9.5 16 179-194 278-293 (498)
330 PF10200 Ndufs5: NADH:ubiquino 22.3 3.2E+02 0.0069 22.4 6.0 34 183-216 54-87 (96)
331 PF06667 PspB: Phage shock pro 22.2 1.7E+02 0.0037 22.9 4.2 23 220-242 41-63 (75)
332 PRK14955 DNA polymerase III su 22.2 93 0.002 30.1 3.4 52 34-87 180-235 (397)
333 cd00632 Prefoldin_beta Prefold 21.9 4E+02 0.0087 21.0 7.6 55 140-196 50-104 (105)
334 PRK14127 cell division protein 21.8 1.9E+02 0.0041 24.1 4.7 13 192-204 39-51 (109)
335 PHA00276 phage lambda Rz-like 21.8 3.9E+02 0.0085 23.5 6.8 30 224-253 52-81 (144)
336 PF06548 Kinesin-related: Kine 21.8 1.9E+02 0.0041 29.9 5.5 7 130-136 94-100 (488)
337 PF02183 HALZ: Homeobox associ 21.8 3E+02 0.0064 19.4 6.0 24 181-204 3-26 (45)
338 PF10168 Nup88: Nuclear pore c 21.6 4.7E+02 0.01 28.1 8.7 85 156-240 614-704 (717)
339 PF05276 SH3BP5: SH3 domain-bi 21.6 6.7E+02 0.015 23.5 17.0 26 153-178 74-99 (239)
340 PF13991 BssS: BssS protein fa 21.5 92 0.002 24.4 2.6 23 224-246 45-67 (73)
341 COG0172 SerS Seryl-tRNA synthe 21.5 8.8E+02 0.019 24.8 11.3 67 181-247 34-101 (429)
342 PRK07471 DNA polymerase III su 21.4 1.3E+02 0.0029 29.2 4.3 54 25-83 188-241 (365)
343 PRK10361 DNA recombination pro 21.4 9.2E+02 0.02 25.0 10.5 8 235-242 99-106 (475)
344 KOG4466 Component of histone d 21.3 2.1E+02 0.0046 27.8 5.5 6 186-191 33-38 (291)
345 PF06008 Laminin_I: Laminin Do 21.2 6.3E+02 0.014 23.0 16.2 98 148-251 122-222 (264)
346 KOG0993 Rab5 GTPase effector R 21.1 8.6E+02 0.019 25.4 9.9 32 219-250 160-193 (542)
347 PRK06305 DNA polymerase III su 21.1 8.4E+02 0.018 24.4 13.4 57 26-87 169-229 (451)
348 PHA03162 hypothetical protein; 21.1 1.2E+02 0.0027 26.3 3.5 22 187-208 17-38 (135)
349 KOG4715 SWI/SNF-related matrix 20.9 6.4E+02 0.014 25.3 8.7 20 137-156 197-216 (410)
350 KOG4083 Head-elevated expressi 20.6 2.6E+02 0.0055 25.7 5.6 16 229-244 102-117 (192)
351 PF08941 USP8_interact: USP8 i 20.6 41 0.00089 30.5 0.6 61 188-251 2-72 (179)
352 PRK01156 chromosome segregatio 20.6 1.1E+03 0.023 25.3 15.2 21 37-57 29-50 (895)
353 PRK14960 DNA polymerase III su 20.5 1.1E+03 0.024 25.6 14.9 55 26-85 166-224 (702)
354 PF05622 HOOK: HOOK protein; 20.3 34 0.00074 35.8 0.0 69 180-248 447-522 (713)
355 PHA03155 hypothetical protein; 20.2 1.4E+02 0.0029 25.5 3.5 21 187-207 12-32 (115)
356 TIGR01541 tape_meas_lam_C phag 20.1 8.1E+02 0.018 23.8 12.4 21 222-242 84-104 (332)
357 PF14559 TPR_19: Tetratricopep 20.1 2.9E+02 0.0063 18.7 4.8 39 46-86 12-53 (68)
358 PRK06975 bifunctional uroporph 20.1 9.2E+02 0.02 25.4 10.3 25 219-243 383-407 (656)
359 PF08989 DUF1896: Domain of un 20.1 2.2E+02 0.0049 25.0 4.9 36 148-183 27-62 (144)
360 PF10018 Med4: Vitamin-D-recep 20.0 6E+02 0.013 22.3 9.2 16 192-207 4-19 (188)
361 TIGR01010 BexC_CtrB_KpsE polys 20.0 7.5E+02 0.016 23.4 12.4 48 148-195 139-189 (362)
No 1
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=99.02 E-value=3.9e-09 Score=107.61 Aligned_cols=122 Identities=28% Similarity=0.309 Sum_probs=105.8
Q ss_pred CcchHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 133 DGPEWVELFVREMM-SSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHE 211 (269)
Q Consensus 133 ~g~eWVEl~V~EM~-~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQhe 211 (269)
.|-.+|.-||.|.+ --....+...|..+.++..|+.+...+..++. .+..|..+||..++.|..+...|+++++.+++
T Consensus 308 e~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s~~~al-~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e 386 (632)
T PF14817_consen 308 EQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSSEREAL-ALELEVAGLKASLNALRSECQRLKEAAAERQE 386 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666655554 44458888899999999999997776665544 57779999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024305 212 RQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAE 255 (269)
Q Consensus 212 R~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 255 (269)
...+++.+.|++.++++++.+||+|||+|...||++..||.+.+
T Consensus 387 ~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~ 430 (632)
T PF14817_consen 387 ALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSP 430 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhCh
Confidence 99999999999999999999999999999999999999998865
No 2
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=98.33 E-value=1.2e-06 Score=59.74 Aligned_cols=40 Identities=30% Similarity=0.678 Sum_probs=36.0
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 84 (269)
+..|..|+.+||++++..|+.+|+++++|+|.||..|.++
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4568999999999999999999999999999999999764
No 3
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=98.28 E-value=1.6e-06 Score=59.19 Aligned_cols=38 Identities=26% Similarity=0.594 Sum_probs=35.5
Q ss_pred hhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 46 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
..++.|+.+||++++..++.+|++|++|++.||..|.+
T Consensus 4 ~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 46899999999999999999999999999999999864
No 4
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=97.49 E-value=0.00022 Score=49.37 Aligned_cols=35 Identities=29% Similarity=0.601 Sum_probs=32.8
Q ss_pred hHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHH
Q 024305 47 LLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSL 81 (269)
Q Consensus 47 ~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 81 (269)
.++-|..+||+..+.+||.+|+.|+.|+-.||..+
T Consensus 4 pidiL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 4 PIDILTRVFPHQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred HHHHHHHHCCCCChHHHHHHHHHcCCcHHHHHHHh
Confidence 38999999999999999999999999999999864
No 5
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.49 E-value=0.048 Score=42.66 Aligned_cols=68 Identities=32% Similarity=0.383 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 161 ALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTL 240 (269)
Q Consensus 161 vLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~L 240 (269)
|||-+|.-|.. +-+.+.-+|.|...||+.-..|..|-.- .||.| +...+|.++||+--..+||+||.|
T Consensus 5 v~ekLE~Kiqq--AvdTI~LLQmEieELKEknn~l~~e~q~------~q~~r----eaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 5 VFEKLEAKVQQ--AIDTITLLQMEIEELKEKNNSLSQEVQN------AQHQR----EALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHhHHHHHH------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544544 3456777889988888877666665432 35554 567789999999999999999987
No 6
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=96.12 E-value=0.013 Score=38.75 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=31.1
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHH
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSL 81 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 81 (269)
+..|.+|..+ +.++....+||..||+|++.||.-|
T Consensus 3 ~~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 3 EEKVQQLMEM--GFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 4678999999 9999999999999999999999865
No 7
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=95.81 E-value=0.16 Score=40.13 Aligned_cols=68 Identities=31% Similarity=0.408 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 161 ALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTL 240 (269)
Q Consensus 161 vLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~L 240 (269)
+|+-||.=|-+ +-|.+.-++.|...||++-..|..|+.-++ +.| +..++|.++||+--..+|++||.|
T Consensus 5 vleqLE~KIqq--AvdtI~LLqmEieELKekn~~L~~e~~~~~------~~r----~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 5 VFEKLEAKVQQ--AIDTITLLQMEIEELKEKNNSLSQEVQNAQ------HQR----EELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544 445677789999999999888888876543 333 457789999999999999999987
No 8
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=94.48 E-value=0.31 Score=40.21 Aligned_cols=52 Identities=31% Similarity=0.362 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024305 194 ALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAE 255 (269)
Q Consensus 194 ~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 255 (269)
.|--+|.+||+||.= .+.+ ...|+.-+-+....||++|+.|.+|.+|-+|=+
T Consensus 9 KLraQ~~vLKKaVie-------EQ~k---~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~ 60 (102)
T PF10205_consen 9 KLRAQNQVLKKAVIE-------EQAK---NAELKEQLKEKEQALRKLEQENDSLTFRNQQLT 60 (102)
T ss_pred HHHHHHHHHHHHHHH-------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456999999972 2222 234555677788899999999999999887643
No 9
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.31 E-value=0.97 Score=40.52 Aligned_cols=75 Identities=27% Similarity=0.313 Sum_probs=53.9
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024305 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRS-----------QELHHLKQLVSQYQEQLRTLEVNNYA 246 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~-----------~El~~Lkql~~qyqEqir~LE~~NYa 246 (269)
+..++-+...|...++.+..||.+||+.=.-|---...|++-+ .|+..||..+-.|++++|++|...--
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~ 93 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKD 93 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999987666665666666544 56666666677777777766665544
Q ss_pred HHHHHH
Q 024305 247 LTMHLK 252 (269)
Q Consensus 247 L~~HL~ 252 (269)
...+|.
T Consensus 94 ~~~el~ 99 (194)
T PF15619_consen 94 KDEELL 99 (194)
T ss_pred HHHHHH
Confidence 444443
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.88 E-value=1 Score=34.73 Aligned_cols=62 Identities=40% Similarity=0.467 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 160 RALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (269)
Q Consensus 160 RvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~ 239 (269)
.+|+-||.=|.+ +-+...-++.|+..||++-..|..+|.-|+ +|.++||+--.+++++|+.
T Consensus 4 E~l~~LE~ki~~--aveti~~Lq~e~eeLke~n~~L~~e~~~L~-----------------~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 4 ELLEQLEEKIQQ--AVETIALLQMENEELKEKNNELKEENEELK-----------------EENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
Confidence 356666666654 334466677887777777666665554443 4556666666666666665
Q ss_pred H
Q 024305 240 L 240 (269)
Q Consensus 240 L 240 (269)
|
T Consensus 65 L 65 (72)
T PF06005_consen 65 L 65 (72)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=93.41 E-value=0.21 Score=32.53 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=30.0
Q ss_pred hhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHH
Q 024305 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLN 82 (269)
Q Consensus 46 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~ 82 (269)
..|.+|..+ +.+.+.+..||+.|++|++.|+.-|.
T Consensus 3 ~~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 3 EKLEQLLEM--GFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 457788887 67799999999999999999998764
No 12
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=93.36 E-value=2.1 Score=37.44 Aligned_cols=77 Identities=31% Similarity=0.349 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHH-HHHHHHHHHHHHHHHHHH
Q 024305 159 SRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHE-RQKEYED-RSQELHHLKQLVSQYQEQ 236 (269)
Q Consensus 159 sRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQhe-R~~e~e~-~~~El~~Lkql~~qyqEq 236 (269)
=+|||.||.++..+... .-|...|++..+.|..+..- ++...-|-+ +.-++++ ..+|.+.|...+.+.|++
T Consensus 32 V~vLE~Le~~~~~n~~~------~~e~~~L~~d~e~L~~q~~~-ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e 104 (158)
T PF09744_consen 32 VRVLELLESLASRNQEH------EVELELLREDNEQLETQYER-EKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEE 104 (158)
T ss_pred HHHHHHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999888876543 33556777777777665543 333333332 3333333 457777887788888888
Q ss_pred HHHHHh
Q 024305 237 LRTLEV 242 (269)
Q Consensus 237 ir~LE~ 242 (269)
.|.|+.
T Consensus 105 ~r~L~~ 110 (158)
T PF09744_consen 105 NRQLEL 110 (158)
T ss_pred HHHHHH
Confidence 888883
No 13
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=93.31 E-value=0.22 Score=32.33 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=29.6
Q ss_pred hhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHH
Q 024305 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSL 81 (269)
Q Consensus 46 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 81 (269)
..|.+|..+ +.++.....+|+.||+|++.|+.-|
T Consensus 3 ~~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 3 EKIDQLLEM--GFSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 457888888 7888999999999999999998765
No 14
>PF15058 Speriolin_N: Speriolin N terminus
Probab=92.37 E-value=0.19 Score=45.73 Aligned_cols=26 Identities=46% Similarity=0.533 Sum_probs=19.2
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRA 205 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRA 205 (269)
+.+=.||+.||+|+ +|++||.-||||
T Consensus 15 erLv~ENeeLKKlV-rLirEN~eLksa 40 (200)
T PF15058_consen 15 ERLVRENEELKKLV-RLIRENHELKSA 40 (200)
T ss_pred HHHHhhhHHHHHHH-HHHHHHHHHHHH
Confidence 33446788888877 778888888887
No 15
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=92.29 E-value=2.3 Score=33.61 Aligned_cols=88 Identities=22% Similarity=0.324 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHh-h---HHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 024305 162 LEILEKSICARA-S---AEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQL 237 (269)
Q Consensus 162 LEafEksi~~ra-~---ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqi 237 (269)
.+.+.+++..|. . -+..-.+.++...|+.+++.|..+.+.+-+.|..--.-..+.++...|+..+|.-+..+++++
T Consensus 11 ~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 11 PEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777773 2 333445667888888899999999888888887665444578888899999999999999999
Q ss_pred HHHHhhhHHHHH
Q 024305 238 RTLEVNNYALTM 249 (269)
Q Consensus 238 r~LE~~NYaL~~ 249 (269)
+.+|..-+.+-+
T Consensus 91 ~~~e~~l~~~l~ 102 (108)
T PF02403_consen 91 KELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999988776644
No 16
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.11 E-value=2.8 Score=37.96 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=45.7
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSIQH---ERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHL 251 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~IQh---eR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL 251 (269)
+++|...||.++..+..+.. .+.--+|. ++.+...+...|.++|++-+.+.+.+++.||..|-.+.-..
T Consensus 98 le~el~~l~~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWN--QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777766665543 11111222 23344455778888888899999999999999988887544
No 17
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=90.67 E-value=0.48 Score=38.63 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=29.5
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHER 212 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR 212 (269)
..+++|+..|+.++..|..||.|||+|..|=..|
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~ 107 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENELLKEAVEYGRAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 3478899999999999999999999999886543
No 18
>PLN02678 seryl-tRNA synthetase
Probab=90.40 E-value=5.1 Score=40.30 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=55.5
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 024305 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEHS 257 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~ 257 (269)
.-.+.+|-..|+.+++.|..|.+.+-+.+..=..-..+.++...|+++||+-+.+.+++++.+|..-+.+-+.
T Consensus 35 il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~------- 107 (448)
T PLN02678 35 VIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKT------- 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3345556666777777777777777777654221223555677788899988899999999988887765444
Q ss_pred CCCCCCCCCCC
Q 024305 258 NSIPGRFHPDV 268 (269)
Q Consensus 258 ~~~~g~~~PDV 268 (269)
+|-.-||||
T Consensus 108 --iPNi~~~~V 116 (448)
T PLN02678 108 --IGNLVHDSV 116 (448)
T ss_pred --CCCCCCccC
Confidence 366666666
No 19
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=90.34 E-value=5 Score=39.65 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=50.2
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024305 177 AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHL 251 (269)
Q Consensus 177 ~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL 251 (269)
..-.+.++-..|+.+++.|..|.+.+-+.+..-.....+.+....|..+||+-+.+..++++.+|..-+.+-++|
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334456677777788888888888777777642222224555667777788777777778877777766655544
No 20
>PHA02047 phage lambda Rz1-like protein
Probab=90.13 E-value=2 Score=35.41 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcC
Q 024305 203 KRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEHSN 258 (269)
Q Consensus 203 KRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~ 258 (269)
.|+..|=|++-+. ..+.+.+++.-+..||+++..||.+--.=+--+++|-..+
T Consensus 26 ~r~~g~~h~~a~~---la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n 78 (101)
T PHA02047 26 YRALGIAHEEAKR---QTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQN 78 (101)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5777888888776 4567999999999999999999999888888888887643
No 21
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=89.79 E-value=3.5 Score=39.11 Aligned_cols=65 Identities=35% Similarity=0.321 Sum_probs=44.3
Q ss_pred HHHhhHHHHHhhHH--------HhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024305 170 CARASAEAAQSFHQ--------ENKMLKEQVEALIQENMILKR----AVSIQHERQKEYEDRSQELHHLKQLVSQYQE 235 (269)
Q Consensus 170 ~~ra~ae~~~~~~k--------En~~LK~ql~~l~~eN~iLKR----Av~IQheR~~e~e~~~~El~~Lkql~~qyqE 235 (269)
..|++|+.+.+-+| |.+-|-+.-++|..||..|.+ .++-||+--.+++..++||.+||| --||+-
T Consensus 76 KNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~-~~~~~~ 152 (292)
T KOG4005|consen 76 KNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ-QQQHNT 152 (292)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH-HHHHhh
Confidence 34666655543333 555666666777777766643 578889888899999999999988 334443
No 22
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=89.07 E-value=7.1 Score=38.50 Aligned_cols=80 Identities=24% Similarity=0.342 Sum_probs=45.1
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQK-E-YEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEH 256 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~-e-~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 256 (269)
-.+.++-..++.+++.|..|.+.+-+.+.. ..+.+ + .+....+..+||+-+.+.+++++.+|..-+.+-++|
T Consensus 33 ~~ld~~~r~~~~~~~~l~~erN~~sk~i~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l----- 106 (418)
T TIGR00414 33 IALDDERKKLLSEIEELQAKRNELSKQIGK-AKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI----- 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence 334455566666666666666666665543 11111 2 344555666676666666666666666655554444
Q ss_pred cCCCCCCCCCCC
Q 024305 257 SNSIPGRFHPDV 268 (269)
Q Consensus 257 ~~~~~g~~~PDV 268 (269)
|-.-||||
T Consensus 107 ----PN~~~~~v 114 (418)
T TIGR00414 107 ----PNIPHESV 114 (418)
T ss_pred ----CCCCCccC
Confidence 55555655
No 23
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=88.74 E-value=6.2 Score=33.95 Aligned_cols=68 Identities=22% Similarity=0.271 Sum_probs=48.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYED-RSQELHHLKQLVSQYQEQLRTLEVNNYALTM 249 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~-~~~El~~Lkql~~qyqEqir~LE~~NYaL~~ 249 (269)
+..-+..++.+-..+..-|+-|.++ .++-++...++. ..+++.+...++.+.+.+|++|...|-.|+-
T Consensus 28 ~~~a~~~~~~~~~~l~~~~~qL~~l-~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 28 LERANRVLKAQQAELASKANQLIVL-LALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 4445555555555666666666555 556656554443 5678899999999999999999999998874
No 24
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=88.58 E-value=17 Score=33.22 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhhHHHH--HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHH
Q 024305 159 SRALEILEKSICARASAEAA--QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDR----SQELHHLKQLVSQ 232 (269)
Q Consensus 159 sRvLEafEksi~~ra~ae~~--~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~----~~El~~Lkql~~q 232 (269)
..|.+.|||.|....+.... ...+.+..-+....+.+..+-..+-++|.=.|.|..-+.+. ..-=.-||.-+..
T Consensus 43 ~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~e 122 (207)
T PF05010_consen 43 RKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEE 122 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46889999998885544211 11122333333444445555567788999888886644332 1222457888999
Q ss_pred HHHHHHHHHhhhHHHHHHHH
Q 024305 233 YQEQLRTLEVNNYALTMHLK 252 (269)
Q Consensus 233 yqEqir~LE~~NYaL~~HL~ 252 (269)
|.+.|+..|+..-+|.-|-.
T Consensus 123 y~~~l~~~eqry~aLK~hAe 142 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAE 142 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999853
No 25
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.19 E-value=4.4 Score=38.87 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024305 186 KMLKEQVEALIQENMIL-------KRAVSIQHERQKEY-EDRSQELHHLKQLVSQYQEQLRTLEVNNYALTM 249 (269)
Q Consensus 186 ~~LK~ql~~l~~eN~iL-------KRAv~IQheR~~e~-e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~ 249 (269)
.-|+.+...|..+|+-| |--+--||-..-.. .....++.|++.++.|.++.||.||+.|.-|--
T Consensus 55 ~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 55 DQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33444444444444444 33344444332221 234578999999999999999999999987753
No 26
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=87.90 E-value=12 Score=29.71 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=58.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024305 148 SSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLK 227 (269)
Q Consensus 148 Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lk 227 (269)
...+++|-.|=.+.|..||++|..|-...... ..+.+.++.|..+..-|-..+--.-.|....+..+.|+.+
T Consensus 3 ~~~le~al~rL~~aid~LE~~v~~r~~~~~~~------~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~-- 74 (89)
T PF13747_consen 3 TYSLEAALTRLEAAIDRLEKAVDRRLERDRKR------DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSR-- 74 (89)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH--
Confidence 45788999999999999999999987763221 4455666677777666666666666677777777777665
Q ss_pred HHHHHHHHHHHH
Q 024305 228 QLVSQYQEQLRT 239 (269)
Q Consensus 228 ql~~qyqEqir~ 239 (269)
-+.-..|.||.
T Consensus 75 -rL~~a~e~Ir~ 85 (89)
T PF13747_consen 75 -RLDSAIETIRA 85 (89)
T ss_pred -HHHHHHHHHHH
Confidence 45555566654
No 27
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.35 E-value=19 Score=32.21 Aligned_cols=71 Identities=24% Similarity=0.347 Sum_probs=48.9
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024305 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAE 255 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 255 (269)
+..+..||..|.+=|..+..|+.-|++-+. ++++ -...++.+|.-+...+++|+.|+..+-+|.....+-.
T Consensus 50 m~ei~~eN~~L~epL~~a~~e~~eL~k~L~-~y~k------dK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle 120 (201)
T PF13851_consen 50 MAEISQENKRLSEPLKKAEEEVEELRKQLK-NYEK------DKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLE 120 (201)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444667777777777777777777777654 2333 2345777777777778888888888877777665544
No 28
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=86.93 E-value=6 Score=38.66 Aligned_cols=72 Identities=35% Similarity=0.494 Sum_probs=54.0
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQK--EYEDRSQELHHLKQL----------VSQYQEQLRTLEVNNYA 246 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~--e~e~~~~El~~Lkql----------~~qyqEqir~LE~~NYa 246 (269)
+.+|-.|-.|+.||+.-..||.||-+. | ||| |.|...|-+++|... |-.||-|+..|-..--.
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~----h-RQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrt 77 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKM----H-RQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRT 77 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999885 3 666 666677777777654 45788888777666666
Q ss_pred HHHHHHHHh
Q 024305 247 LTMHLKQAE 255 (269)
Q Consensus 247 L~~HL~qA~ 255 (269)
|---|-.|.
T Consensus 78 LeRELARaK 86 (351)
T PF07058_consen 78 LERELARAK 86 (351)
T ss_pred HHHHHHHhh
Confidence 666665554
No 29
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.62 E-value=8.4 Score=33.26 Aligned_cols=67 Identities=27% Similarity=0.293 Sum_probs=51.1
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAE 255 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 255 (269)
.+-++|+..|++++..+..+.+.|. .|+.....|...|.+.+.+-|++|..||..|..+.-||+-.-
T Consensus 48 En~k~eie~L~~el~~lt~el~~L~----------~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 48 ENSKAEIETLEEELEELTSELNQLE----------LELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4456777888888888887776654 244455567777888888889999999999999998887554
No 30
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.38 E-value=21 Score=34.08 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024305 218 DRSQELHHLKQLVSQYQEQLRTLEVNN 244 (269)
Q Consensus 218 ~~~~El~~Lkql~~qyqEqir~LE~~N 244 (269)
....|++.++.-+...++++.+|+..|
T Consensus 110 ~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 110 EFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344455555555555556666555443
No 31
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=84.73 E-value=2.1 Score=29.15 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=28.4
Q ss_pred hHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 47 LLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 47 ~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
+|.++..+- +.++.+-...|+.|+.||+.||..+.+
T Consensus 3 ~i~~F~~iT-g~~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 3 KIAQFMSIT-GADEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHH--SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456666666 569999999999999999999988765
No 32
>PLN02320 seryl-tRNA synthetase
Probab=83.62 E-value=16 Score=37.40 Aligned_cols=81 Identities=23% Similarity=0.211 Sum_probs=42.8
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 024305 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEHS 257 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~ 257 (269)
.-.+.++...++.+++.|..|.+-+-+.+.. ..-..+.++...|...||+-+....++++.+|..-..+-+
T Consensus 95 l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l-------- 165 (502)
T PLN02320 95 VLELYENMLALQKEVERLRAERNAVANKMKG-KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQ-------- 165 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 3345556666777777777776666666543 1111233444455555555555555555555544333333
Q ss_pred CCCCCCCCCCC
Q 024305 258 NSIPGRFHPDV 268 (269)
Q Consensus 258 ~~~~g~~~PDV 268 (269)
.+|-.-||||
T Consensus 166 -~iPN~~h~~V 175 (502)
T PLN02320 166 -SIPNMTHPDV 175 (502)
T ss_pred -hCCCCCCccC
Confidence 2465566665
No 33
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=83.57 E-value=6.7 Score=35.81 Aligned_cols=63 Identities=32% Similarity=0.390 Sum_probs=43.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhHHH
Q 024305 184 ENKMLKEQVEALIQENMILKRAVSIQH-ERQKEYEDRSQEL--------HHLKQLVSQYQEQLRTLEVNNYAL 247 (269)
Q Consensus 184 En~~LK~ql~~l~~eN~iLKRAv~IQh-eR~~e~e~~~~El--------~~Lkql~~qyqEqir~LE~~NYaL 247 (269)
|+.+||+-.++|..||.=|+-.-.+.- .|+|--. ..+|- .-++|-|++|+.+|+.||..--.|
T Consensus 56 EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrk-larEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L 127 (195)
T PF10226_consen 56 EIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRK-LAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEEL 127 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHH-HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999998877665553 3444322 22332 345778889999999888765554
No 34
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=83.56 E-value=19 Score=31.91 Aligned_cols=95 Identities=15% Similarity=0.267 Sum_probs=53.9
Q ss_pred CcchHHHHHHHHHhcCCChHHHHHHHHHHH------HHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024305 133 DGPEWVELFVREMMSSSNIDDARARASRAL------EILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAV 206 (269)
Q Consensus 133 ~g~eWVEl~V~EM~~Asd~dDAraRAsRvL------EafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv 206 (269)
+--+|++++.+-..+.-.+.|-+.+..==| ..=+..+.+| ..-+......+.++++.|.+.-..+-.-|
T Consensus 41 ~dl~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~~t~~~R-----~~lLe~~~~~l~~ri~eLe~~l~~kad~v 115 (175)
T PRK13182 41 EDLQLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQNISSVD-----FEQLEAQLNTITRRLDELERQLQQKADDV 115 (175)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCCccHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345899999999999999999988663111 0001111111 11133333334444444433333332222
Q ss_pred ----HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024305 207 ----SIQHERQKEYEDRSQELHHLKQLVSQYQ 234 (269)
Q Consensus 207 ----~IQheR~~e~e~~~~El~~Lkql~~qyq 234 (269)
..||.| |.|++...++.|.+.+++-+
T Consensus 116 vsYqll~hr~--e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 116 VSYQLLQHRR--EMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred hhHHHHHhHH--HHHHHHHHHHHHHHHHHHHH
Confidence 347755 78888888888888888733
No 35
>PF15058 Speriolin_N: Speriolin N terminus
Probab=83.27 E-value=2.8 Score=38.27 Aligned_cols=37 Identities=35% Similarity=0.495 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024305 185 NKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQ 232 (269)
Q Consensus 185 n~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~q 232 (269)
++-|.+|+++|.+||.=||+-|+.= +|.+.||.++.|
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLi-----------rEN~eLksaL~e 43 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLI-----------RENHELKSALGE 43 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 3568899999999999999988642 457778887554
No 36
>PRK11637 AmiB activator; Provisional
Probab=83.12 E-value=48 Score=32.36 Aligned_cols=9 Identities=11% Similarity=0.291 Sum_probs=4.4
Q ss_pred HhcCCChHH
Q 024305 145 MMSSSNIDD 153 (269)
Q Consensus 145 M~~Asd~dD 153 (269)
+.++.++++
T Consensus 145 Ll~a~~~~~ 153 (428)
T PRK11637 145 ILSGEESQR 153 (428)
T ss_pred HhcCCChhH
Confidence 345555533
No 37
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.54 E-value=28 Score=29.15 Aligned_cols=100 Identities=24% Similarity=0.234 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-hHHHHHHH
Q 024305 151 IDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHE-------RQK-EYEDRSQE 222 (269)
Q Consensus 151 ~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQhe-------R~~-e~e~~~~E 222 (269)
|-.-|.|-....|.++.-+..-.+. ...++..+..||++++.+.++...++.-..--.. ..+ +-++.++-
T Consensus 43 Ll~~~~r~~~~~e~l~~~~~~l~~d--~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLSDKLRRLRSD--IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888887777663332 2334555555566655555555544332221111 111 11222233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024305 223 LHHLKQLVSQYQEQLRTLEVNNYALTMHLK 252 (269)
Q Consensus 223 l~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 252 (269)
...+.+...||.-.||+-|...-.|.-+|.
T Consensus 121 k~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 121 KNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 335667788999999999999998888775
No 38
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=82.53 E-value=16 Score=29.56 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=43.5
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024305 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNN 244 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~N 244 (269)
...+..||+...+.+..-...|.-|+..+.+.+.-..+ ..+.-+++++-..+++|+||+...+|
T Consensus 27 i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~---~~~~~qq~r~~~e~~~e~ik~~lk~d 90 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEE---QQKREQQLRQQSEERRESIKTALKDD 90 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 45567777777777777777777777766654433333 33445567777889999999876654
No 39
>KOG4588 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=82.12 E-value=3.3 Score=39.07 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=29.8
Q ss_pred hCCCCCHHHHHHHHHHcCccHHHHHHHHHhhh
Q 024305 54 IFPDMDNQILDRALEECGDDLDSAIRSLNELR 85 (269)
Q Consensus 54 lFP~md~q~le~aLe~cgndlDaAIksL~~L~ 85 (269)
+||.||-+++|-||++.=-++|.+|.-|....
T Consensus 1 Mfp~~Dye~ie~VlranlgavD~tid~llaM~ 32 (267)
T KOG4588|consen 1 MFPYDDYEDIEGVLRANLGAVDRTIDDLLAMF 32 (267)
T ss_pred CCCcchHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 69999999999999998889999999998865
No 40
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=81.89 E-value=7.6 Score=43.34 Aligned_cols=79 Identities=23% Similarity=0.273 Sum_probs=54.6
Q ss_pred HHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024305 175 AEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHL-KQLVSQYQEQLRTLEVNNYALTMHLKQ 253 (269)
Q Consensus 175 ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~L-kql~~qyqEqir~LE~~NYaL~~HL~q 253 (269)
+.....+.+|...|.+||+. |=+.|-.+ ++++-+|...| +++-..|+|+||.+|.-|-++.-||+.
T Consensus 363 arvirElReEve~lr~qL~~----------ae~~~~~e---l~e~l~esekli~ei~~twEEkl~ktE~in~erq~~L~~ 429 (1714)
T KOG0241|consen 363 ARVIRELREEVEKLREQLEQ----------AEAMKLPE---LKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQLES 429 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHhh----------hhhccchH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666543 33344444 44455555443 667778999999999999999999998
Q ss_pred HhhcCCCCCCCCC
Q 024305 254 AEHSNSIPGRFHP 266 (269)
Q Consensus 254 A~~~~~~~g~~~P 266 (269)
+-.+-..+|.|+-
T Consensus 430 ~gis~~~sgikv~ 442 (1714)
T KOG0241|consen 430 MGISLENSGIKVG 442 (1714)
T ss_pred HHHHHhccccccc
Confidence 8876667777653
No 41
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.59 E-value=40 Score=30.57 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=37.5
Q ss_pred HHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024305 176 EAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHH 225 (269)
Q Consensus 176 e~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~ 225 (269)
+..+.+..|...|+.+++.|...|.-|++-|.-|+....+.+....++..
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888888888888887777665554443
No 42
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=81.47 E-value=16 Score=37.29 Aligned_cols=61 Identities=26% Similarity=0.341 Sum_probs=29.4
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE 241 (269)
+.+.++|+.||++.++|.+...-+.. .||..=..+..+..+|.++|++-+.+.+.+|..|+
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r~~~id~--~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 76 AKLISENEALKAENERLQKREQSIDQ--QIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666543322221 23333333333444455555555555555554443
No 43
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.21 E-value=49 Score=36.97 Aligned_cols=76 Identities=30% Similarity=0.382 Sum_probs=55.4
Q ss_pred HHHHHhhHHHhHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHh---------------------
Q 024305 175 AEAAQSFHQENKMLKEQVEALIQENMILKR------------------AVSIQHERQKE--------------------- 215 (269)
Q Consensus 175 ae~~~~~~kEn~~LK~ql~~l~~eN~iLKR------------------Av~IQheR~~e--------------------- 215 (269)
.|-++.+|.|..+|||.++.|..+--|||- =+-|||.|+||
T Consensus 324 EERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~k 403 (1243)
T KOG0971|consen 324 EERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQK 403 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 445678999999999999999998888884 24578877654
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024305 216 -YEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMH 250 (269)
Q Consensus 216 -~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~H 250 (269)
.|.++.|+.+|++.-...+.++-.+|-..--|.-.
T Consensus 404 elE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 404 ELEKKNSELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777776666665555433
No 44
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=80.80 E-value=40 Score=29.92 Aligned_cols=67 Identities=27% Similarity=0.376 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024305 185 NKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQ 253 (269)
Q Consensus 185 n~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 253 (269)
...|+.++..|..++.-|+.-+.-.-.+....+.+..|..+ .....+++.|.-|..+|--|+-+|++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~--~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ--EEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777777777777777666554444444444344333 33567899999999999988888864
No 45
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.85 E-value=14 Score=37.71 Aligned_cols=55 Identities=31% Similarity=0.430 Sum_probs=25.7
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAV-SIQHERQKEYEDRSQELHHLKQLVSQYQEQLR 238 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv-~IQheR~~e~e~~~~El~~Lkql~~qyqEqir 238 (269)
+++||+.||++...+-.. +-.|| ..+.+-.++.+....|+++++.++.+.+.|+.
T Consensus 85 l~~eN~~L~~r~~~id~~---i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 85 LKAENERLQKREQSIDQQ---IQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHhhhhHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666665544333221 22232 22222233444445556666666666655554
No 46
>PRK09039 hypothetical protein; Validated
Probab=78.40 E-value=41 Score=32.47 Aligned_cols=65 Identities=23% Similarity=0.207 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHH--HHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 024305 151 IDDARARASRALEIL--EKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEY 216 (269)
Q Consensus 151 ~dDAraRAsRvLEaf--Eksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~ 216 (269)
...+..|+...=+.| +|.+.+.+.++ +..++.|...||+|+..|..+-..++.--.-++.+..++
T Consensus 111 ~~~~~~~~~~l~~~L~~~k~~~se~~~~-V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 111 GAAAEGRAGELAQELDSEKQVSARALAQ-VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556665543333 23344444442 344666666666666555555555555554444444444
No 47
>PRK03918 chromosome segregation protein; Provisional
Probab=78.27 E-value=93 Score=32.63 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=20.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 024305 141 FVREMMSSSNIDDARARASRALEILEKSICA 171 (269)
Q Consensus 141 ~V~EM~~Asd~dDAraRAsRvLEafEksi~~ 171 (269)
++.++......+.+..++..+...++..+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (880)
T PRK03918 150 VVRQILGLDDYENAYKNLGEVIKEIKRRIER 180 (880)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777776666666665544
No 48
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.97 E-value=16 Score=31.23 Aligned_cols=67 Identities=21% Similarity=0.321 Sum_probs=43.1
Q ss_pred HHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 175 AEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 175 ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~ 242 (269)
.+....+..|+..|++++..|..++..|+--++.=...... +++..++.+|++-+.++++++..|..
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN-EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566667777777777777777776665555544432 33566677777777777777777765
No 49
>COG4797 Predicted regulatory domain of a methyltransferase [General function prediction only]
Probab=77.78 E-value=1.8 Score=41.08 Aligned_cols=25 Identities=48% Similarity=0.918 Sum_probs=23.3
Q ss_pred HHhhCC-CCCHHHHHHHHHHcCccHH
Q 024305 51 LAAIFP-DMDNQILDRALEECGDDLD 75 (269)
Q Consensus 51 L~~lFP-~md~q~le~aLe~cgndlD 75 (269)
|...|| .|++++.|+.+..||||+=
T Consensus 4 ls~~f~~nm~~~i~E~L~A~~gdD~i 29 (268)
T COG4797 4 LSATFPGNMPEHIEEKLLAECGDDII 29 (268)
T ss_pred hhhhccccCCHHHHHHHHhhcccchh
Confidence 789999 8999999999999999974
No 50
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=76.76 E-value=26 Score=26.93 Aligned_cols=56 Identities=25% Similarity=0.428 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----h---HHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 024305 188 LKEQVEALIQENMILKRAVSIQHERQK----E---YEDRS-QELHHLKQLVSQYQEQLRTLEVN 243 (269)
Q Consensus 188 LK~ql~~l~~eN~iLKRAv~IQheR~~----e---~e~~~-~El~~Lkql~~qyqEqir~LE~~ 243 (269)
+-+++..|+.||.-||-|+.-=|.=++ + +.+.+ .|..-++..+....+-|.+|...
T Consensus 4 ~~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~E 67 (68)
T PF11577_consen 4 MQQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKEE 67 (68)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 346788899999999988764333222 2 22222 34444555555666666665543
No 51
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=76.00 E-value=34 Score=35.64 Aligned_cols=71 Identities=25% Similarity=0.292 Sum_probs=30.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYED----RSQELHHLKQLVSQYQEQLRTLEVNNYALTMHL 251 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~----~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL 251 (269)
+.+++..+....+.+..|+..|+.-..-+-.|..++++ ..+......+++.++.+-...+|+.+.-|.-+|
T Consensus 190 L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rL 264 (546)
T PF07888_consen 190 LKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRL 264 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555555544444444444432 222223333334444444444444444444444
No 52
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=75.84 E-value=45 Score=27.68 Aligned_cols=75 Identities=21% Similarity=0.310 Sum_probs=41.3
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYE-----------DRSQELHHLKQLVSQYQEQLRTLEVNNYALTM 249 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e-----------~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~ 249 (269)
++.|...++.+...+..+-..++.=+..|+.+-++.+ +-.++++.||.-+..++.+|..|+..-.+...
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~ 87 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKA 87 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555444333 22356666666666666666666666666666
Q ss_pred HHHHHh
Q 024305 250 HLKQAE 255 (269)
Q Consensus 250 HL~qA~ 255 (269)
-|.++.
T Consensus 88 ~l~~~e 93 (132)
T PF07926_consen 88 ELEESE 93 (132)
T ss_pred HHHHHH
Confidence 555443
No 53
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=74.77 E-value=18 Score=32.89 Aligned_cols=57 Identities=30% Similarity=0.430 Sum_probs=39.9
Q ss_pred HHHhhHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 177 AAQSFHQENKMLKEQVEALIQ-------ENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 177 ~~~~~~kEn~~LK~ql~~l~~-------eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE 241 (269)
.-+.+..++..|.++++.|.+ |-..|-.++.| ++++.+.+.||..|..|.|+|+.+.
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~--------eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT--------EEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777766654 34555555544 4577789999999999999998774
No 54
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=74.65 E-value=52 Score=30.05 Aligned_cols=36 Identities=31% Similarity=0.344 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024305 195 LIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLV 230 (269)
Q Consensus 195 l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~ 230 (269)
+.+||..||+=++....+..+++...+|.++||+++
T Consensus 74 l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 74 LREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333334444444555666666654
No 55
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.13 E-value=82 Score=29.92 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=39.8
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 180 SFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 180 ~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE 241 (269)
--+.|...||++|..+..+..-+|+-+.-.....++ ...++..++....+++++|..+|
T Consensus 206 ~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~---l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 206 CDQEELEALRQELAEQKEEIEAKKKELAELQEELEE---LEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577788888888888877777766654444444 44556666666777777777766
No 56
>PRK02224 chromosome segregation protein; Provisional
Probab=74.13 E-value=1.2e+02 Score=31.95 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=34.6
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE 241 (269)
..++.+...+++++..+..+...|++-+.--+.+.++++...+++..+..-+...+++|..+|
T Consensus 209 ~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e 271 (880)
T PRK02224 209 NGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETE 271 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666555555555555554444444444444444444443
No 57
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=73.39 E-value=68 Score=31.49 Aligned_cols=83 Identities=22% Similarity=0.221 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 160 RALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (269)
Q Consensus 160 RvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~ 239 (269)
.-++.+++.+..-... .......|...+..+...|.++-..+|.-+..=.+.+.+|.+.++|++-.+++..+|-.+.+.
T Consensus 320 ~q~~~~~~~~~~e~~~-~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe 398 (458)
T COG3206 320 AQLAELRQQIAAELRQ-ILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQE 398 (458)
T ss_pred HHHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555443332 233344567788888899999999999998888888889999999999988888888877777
Q ss_pred HHhh
Q 024305 240 LEVN 243 (269)
Q Consensus 240 LE~~ 243 (269)
+...
T Consensus 399 ~~~~ 402 (458)
T COG3206 399 LSIQ 402 (458)
T ss_pred HHHh
Confidence 6654
No 58
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=72.88 E-value=89 Score=29.80 Aligned_cols=76 Identities=29% Similarity=0.394 Sum_probs=56.3
Q ss_pred HhhHHHHH------hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024305 172 RASAEAAQ------SFHQENKMLKEQVEALIQENMILKRAVSIQHER-QKEYEDRSQELHHLKQLVSQYQEQLRTLEVNN 244 (269)
Q Consensus 172 ra~ae~~~------~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR-~~e~e~~~~El~~Lkql~~qyqEqir~LE~~N 244 (269)
||+-...+ .++.-...+|+.++.+++||.-|..- .++ +.+|++.+.++..|..-.++..|..+.|+-.-
T Consensus 118 RAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~e----leele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev 193 (290)
T COG4026 118 RAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKE----LEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEV 193 (290)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence 45554444 56677788999999999998755432 333 34788888888888888888889999888888
Q ss_pred HHHHHHH
Q 024305 245 YALTMHL 251 (269)
Q Consensus 245 YaL~~HL 251 (269)
|-|.-.+
T Consensus 194 ~~L~~r~ 200 (290)
T COG4026 194 YDLKKRW 200 (290)
T ss_pred HHHHHHH
Confidence 8777655
No 59
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=72.38 E-value=58 Score=30.98 Aligned_cols=102 Identities=27% Similarity=0.419 Sum_probs=63.9
Q ss_pred cCCCCcchHHHHHHHHHhcCCChHHHHHHHHH-H--HHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHH---
Q 024305 129 VFQLDGPEWVELFVREMMSSSNIDDARARASR-A--LEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMIL--- 202 (269)
Q Consensus 129 ~~p~~g~eWVEl~V~EM~~Asd~dDAraRAsR-v--LEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iL--- 202 (269)
.+...|+.--++|=+|+ ++-++|.+|.. - +.-+||+|.+. +.+...+...++.++..+..+..-|
T Consensus 128 eit~~GA~LydlL~kE~----~lr~~R~~a~~r~~e~~~iE~~l~~a-----i~~~~~~~~~~~~~l~~l~~de~~Le~K 198 (267)
T PF10234_consen 128 EITQRGASLYDLLGKEV----ELREERQRALARPLELNEIEKALKEA-----IKAVQQQLQQTQQQLNNLASDEANLEAK 198 (267)
T ss_pred HHHHHHHHHHHHHhchH----hHHHHHHHHHcCCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999998 56677776654 1 34477777763 3335666666777776666665443
Q ss_pred ------------HHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 203 ------------KRAVSIQHER---QKEYEDRSQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 203 ------------KRAv~IQheR---~~e~e~~~~El~~Lkql~~qyqEqir~LE~ 242 (269)
||-=..|+-| +.|||....||+. +-..|=++.|.|+=
T Consensus 199 Iekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~---lY~~Y~~kfRNl~y 250 (267)
T PF10234_consen 199 IEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK---LYEIYVEKFRNLDY 250 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH---HHHHHHHHHHhHHH
Confidence 3333444444 2356655555554 56677777776653
No 60
>PHA02562 46 endonuclease subunit; Provisional
Probab=71.57 E-value=1.1e+02 Score=30.26 Aligned_cols=67 Identities=10% Similarity=0.205 Sum_probs=31.6
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQK-EYEDRSQELHHLKQLVSQYQEQLRTLEVNNYAL 247 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~-e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL 247 (269)
.++++..|+.++..+..+-..+++.+.-+-+... +.++...++..+...+.+.+.++..|+.+-..|
T Consensus 179 ~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 179 LNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666655555554444333322211 233344445555555555555555554444433
No 61
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=71.49 E-value=73 Score=35.39 Aligned_cols=91 Identities=24% Similarity=0.306 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHH--hhHHHHHhhHHHhHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHH-H-hHHHH
Q 024305 160 RALEILEKSICAR--ASAEAAQSFHQENKMLKEQVEALIQENMIL----------------KRAVSIQHERQ-K-EYEDR 219 (269)
Q Consensus 160 RvLEafEksi~~r--a~ae~~~~~~kEn~~LK~ql~~l~~eN~iL----------------KRAv~IQheR~-~-e~e~~ 219 (269)
+.|+.+-+++.+. -..++.+-+|.||+.|+.|...+..+-.-- ||+-+.-+-|. + -.+..
T Consensus 298 eeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nv 377 (1265)
T KOG0976|consen 298 EELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENV 377 (1265)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566655555442 124567778889998888876554322111 22222222111 1 11123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024305 220 SQELHHLKQLVSQYQEQLRTLEVNNYALTMH 250 (269)
Q Consensus 220 ~~El~~Lkql~~qyqEqir~LE~~NYaL~~H 250 (269)
..|+|.|+.+-+.-||||--|.-..+.|.+-
T Consensus 378 e~elqsL~~l~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 378 EEELQSLLELQAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 3678899999999999999998888888877
No 62
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.48 E-value=77 Score=33.37 Aligned_cols=66 Identities=24% Similarity=0.294 Sum_probs=50.4
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNN 244 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~N 244 (269)
..++.|.+.--++++.|..+|.-||.-|..|.-=-.|.+.+++|+.+|++-|..-+-++-.|-..-
T Consensus 297 ~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 297 EMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666667889999999999999999976677888899999999888876655555544433
No 63
>CHL00098 tsf elongation factor Ts
Probab=71.13 E-value=7.7 Score=35.15 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=30.2
Q ss_pred hhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhhhcccc
Q 024305 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGSA 89 (269)
Q Consensus 46 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~sa 89 (269)
.+|-.||.. -+-.-.--.+||++||+|+|.||.-|..--+..+
T Consensus 3 ~~ik~LR~~-Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g~~~a 45 (200)
T CHL00098 3 ELVKELRDK-TGAGMMDCKKALQEANGDFEKALESLRQKGLASA 45 (200)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHH
Confidence 345566655 3334444689999999999999999988544333
No 64
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=70.13 E-value=3.6 Score=27.80 Aligned_cols=25 Identities=36% Similarity=0.752 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHcCccHHHHHHHHH
Q 024305 58 MDNQILDRALEECGDDLDSAIRSLN 82 (269)
Q Consensus 58 md~q~le~aLe~cgndlDaAIksL~ 82 (269)
++.++|+.+|+.||.++..|-+.|.
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~Lg 29 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLLG 29 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 4678999999999999999988774
No 65
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=69.25 E-value=49 Score=29.45 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=29.8
Q ss_pred hHHHhHHHHHHHHHHH---HHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALI---QENMILKRAVS------IQHERQKEYEDRSQELHHLKQLVSQYQEQL 237 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~---~eN~iLKRAv~------IQheR~~e~e~~~~El~~Lkql~~qyqEqi 237 (269)
+-.+-..|+.++..+. .|-..|+.... ||.+ ..+..+..+|..+|+..+..||--+
T Consensus 29 Ll~qa~~l~~~i~sm~~y~eei~~l~~~~~~~~~~~l~~E-n~qi~~Lq~EN~eL~~~leEhq~al 93 (181)
T PF05769_consen 29 LLSQAEALNKQIESMRQYQEEIQELNELSKNRPRAGLQQE-NRQIRQLQQENRELRQSLEEHQSAL 93 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444332 33344555444 4443 2234567788888888877766443
No 66
>PF02341 RcbX: RbcX protein; InterPro: IPR003435 The RbcX protein has been identified as having a possible chaperonin-like function []. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RubisCO in Anabaena sp. (strain CA / ATCC 33047). RbcX has been shown to possess a chaperonin-like function assisting correct folding of RubisCO in Escherichia coli expression studies and is needed for RubisCO to reach its maximal activity [].; PDB: 2PEM_B 2PEI_L 2PEK_A 2Z46_E 2Z44_A 2PEJ_F 2PEN_D 2PEQ_B 2Z45_A 3Q20_A ....
Probab=68.86 E-value=22 Score=29.80 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=22.9
Q ss_pred cCCCCcchHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 024305 129 VFQLDGPEWVELFVREMMSSSNIDDARARASRALEILEK 167 (269)
Q Consensus 129 ~~p~~g~eWVEl~V~EM~~Asd~dDAraRAsRvLEafEk 167 (269)
+.+.||..|++.|++| + +.=|.||+++=|-
T Consensus 48 ~~~~DGd~fl~~L~~e-----~----~~LA~RIM~vR~~ 77 (111)
T PF02341_consen 48 NPLQDGDAFLEALMRE-----N----QELALRIMEVREH 77 (111)
T ss_dssp STCSSHHHHHHHHHCC----------HHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHH-----C----HHHHHHHHHHHHH
Confidence 4567999999999999 1 4459999986443
No 67
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=67.76 E-value=70 Score=28.05 Aligned_cols=78 Identities=27% Similarity=0.336 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 159 SRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLR 238 (269)
Q Consensus 159 sRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir 238 (269)
..-|+.+++.+...... ...+..|+..|+..+..+..+-.-+.+++.+ .+-|+..|.--+..-+++++
T Consensus 101 ~~~l~~l~~~~~~~~~~--l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~----------l~DE~~~L~l~~~~~e~k~~ 168 (194)
T PF08614_consen 101 NDELQELEKELSEKERR--LAELEAELAQLEEKIKDLEEELKEKNKANEI----------LQDELQALQLQLNMLEEKLR 168 (194)
T ss_dssp -------------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 33455555555554433 3446666666666666666655555554433 33456666666777788888
Q ss_pred HHHhhhHHHH
Q 024305 239 TLEVNNYALT 248 (269)
Q Consensus 239 ~LE~~NYaL~ 248 (269)
.||.-|--|-
T Consensus 169 ~l~~En~~Lv 178 (194)
T PF08614_consen 169 KLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 68
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=67.70 E-value=56 Score=28.28 Aligned_cols=66 Identities=23% Similarity=0.337 Sum_probs=46.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHh
Q 024305 182 HQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVS----QYQEQLRTLEVNNYALTMHLKQAE 255 (269)
Q Consensus 182 ~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~----qyqEqir~LE~~NYaL~~HL~qA~ 255 (269)
..|...||.||...-.+-.=||.- ..+.++.+.++..|+.-.. .|+.+|..+.. ||||...|..|-
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~-------~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~-~~ai~~al~~ak 95 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKS-------AKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKK-DSAIKSALKGAK 95 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC
Confidence 456667777777666666666652 3455666666666666666 88888888765 899999997764
No 69
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=67.62 E-value=10 Score=34.28 Aligned_cols=44 Identities=30% Similarity=0.346 Sum_probs=32.2
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhhhcccc
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGSA 89 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~sa 89 (269)
..+|-.||.. -+...---.+||++|++|+|.||.-|..--+..+
T Consensus 5 a~~ik~LR~~-tga~~~~ck~AL~~~~gd~~~A~~~lr~~g~~~a 48 (198)
T PRK12332 5 AKLVKELREK-TGAGMMDCKKALEEANGDMEKAIEWLREKGLAKA 48 (198)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHH
Confidence 3466777766 3344445789999999999999999988544443
No 70
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=67.57 E-value=1.3e+02 Score=31.63 Aligned_cols=111 Identities=19% Similarity=0.199 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhH-HHHHhhHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHH--HhHHHHHHHHHHH
Q 024305 152 DDARARASRALEILEKSICARASA-EAAQSFHQENKMLKEQVEALIQENMILKRAV--SIQHERQ--KEYEDRSQELHHL 226 (269)
Q Consensus 152 dDAraRAsRvLEafEksi~~ra~a-e~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv--~IQheR~--~e~e~~~~El~~L 226 (269)
+|+-.-+.++=|-+++-+.+-+.- |...++--+..-+|+.+-.+..||..|+--+ .|+-.|+ .|+++.+-.-.++
T Consensus 208 rdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~ 287 (596)
T KOG4360|consen 208 RDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAEC 287 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555543321 1222233344455555555555555554332 1222222 1222222223333
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCCCCC-CCCCC
Q 024305 227 KQLVSQYQEQLRTLEVNNYALTMHLKQAEHSNSIPG-RFHPD 267 (269)
Q Consensus 227 kql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g-~~~PD 267 (269)
-+.+...||.|+.| .+--++++|++-+.. +| +|+|+
T Consensus 288 m~~~~EaeeELk~l-rs~~~p~~~s~~~~~----~~~~fp~~ 324 (596)
T KOG4360|consen 288 MQMLHEAEEELKCL-RSCDAPKLISQEALS----HGHHFPQL 324 (596)
T ss_pred HHHHHHHHHHHHhh-ccCCCcchhHHHHHH----hhhhCChh
Confidence 44556666666665 345678889888886 34 56654
No 71
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=67.30 E-value=26 Score=27.06 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=42.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 024305 209 QHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEH 256 (269)
Q Consensus 209 QheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 256 (269)
-..|.++.+.+++++.+|++..-+-+.-++.|+..-+.+..|.+.+++
T Consensus 25 l~~~~~ei~~~d~~le~l~~q~~k~~~~~~~L~~~~~r~~l~vQlt~E 72 (80)
T PF11488_consen 25 LESRFKEIDSKDKELEELYQQDCKTEMEVKMLETQDPRDELNVQLTQE 72 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhHHHHHH
Confidence 345888999999999999988888889999999999999999987754
No 72
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=67.18 E-value=16 Score=34.34 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=24.2
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024305 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLV 230 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~ 230 (269)
..++++||+.||+++..|..+-.. .+++..+|+.+||+++
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~~-------------~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLEI-------------LTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHh
Confidence 345788888888887666222221 1223556777777754
No 73
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=66.98 E-value=11 Score=29.71 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=23.2
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRAVSI 208 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRAv~I 208 (269)
+.+++||.-||+.|+.|..|-.-+||-+.|
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~qI 32 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREFQI 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 458889999999998887777777776655
No 74
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=66.37 E-value=8.2 Score=29.19 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=18.2
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHHHHHH
Q 024305 177 AAQSFHQENKMLKEQVEALIQENMILKR 204 (269)
Q Consensus 177 ~~~~~~kEn~~LK~ql~~l~~eN~iLKR 204 (269)
..+.++.-+..|.++...|..||.+||.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666777777777765
No 75
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=65.65 E-value=73 Score=27.96 Aligned_cols=63 Identities=32% Similarity=0.421 Sum_probs=43.5
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELH-HLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~-~Lkql~~qyqEqir~LE 241 (269)
+.+..|...|..+++.|..+|.-|..-+.-.+....-+++...++. .++.+...|.+-|+++-
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~ 148 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLK 148 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888899999999999999998555554544444444444442 56667777777777653
No 76
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=65.26 E-value=83 Score=26.45 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=7.6
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 024305 184 ENKMLKEQVEALIQENMIL 202 (269)
Q Consensus 184 En~~LK~ql~~l~~eN~iL 202 (269)
|...||.++.+|..+..-|
T Consensus 31 E~~~l~~el~~l~~~r~~l 49 (120)
T PF12325_consen 31 ELASLQEELARLEAERDEL 49 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333
No 77
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=65.11 E-value=1.1e+02 Score=32.16 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=8.6
Q ss_pred cccccCCCCCCCCccccccCC
Q 024305 11 FFEDNLAATSPPVSKRIRCSS 31 (269)
Q Consensus 11 ~fed~l~~~spp~sKR~Rcss 31 (269)
+|-+ .+.+-+ +..+.-|.-
T Consensus 8 iF~n-V~~~Y~-P~~~v~C~Y 26 (546)
T PF07888_consen 8 IFNN-VAKSYI-PGTDVECHY 26 (546)
T ss_pred EEec-cccccC-CCCCeEEEE
Confidence 5555 444222 244555543
No 78
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=64.55 E-value=1.1e+02 Score=27.44 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=16.1
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQK 214 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~ 214 (269)
+..|...++.++..+..+..-+|+.+..--+|..
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~ 94 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLE 94 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555544444433333
No 79
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=63.58 E-value=1.1e+02 Score=29.85 Aligned_cols=77 Identities=23% Similarity=0.270 Sum_probs=61.4
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024305 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQA 254 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 254 (269)
+--+.+.....+..+++|..|-...|..+.+==+|..+......-+++||.-...+.+||.-||..-|==.+.-.+|
T Consensus 252 tyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv~lC~~tInrA 328 (336)
T PF05055_consen 252 TYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHVYLCFKTINRA 328 (336)
T ss_pred cchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677778888999999999999988887777776555556689999999999999999999988666655544
No 80
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=63.09 E-value=1.5e+02 Score=28.59 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=42.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 182 HQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 182 ~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~ 242 (269)
+.|...+|++|..+..++...++=+.....+.++ .+..+...+....+++++|+.+|.
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~---l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQE---LESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788888888888888877776666665555 445566666677888888887765
No 81
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=62.90 E-value=42 Score=34.42 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=12.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 024305 182 HQENKMLKEQVEALIQENMILK 203 (269)
Q Consensus 182 ~kEn~~LK~ql~~l~~eN~iLK 203 (269)
|.....|+++|+.|.+|..+++
T Consensus 75 Q~kasELEKqLaaLrqElq~~s 96 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLN 96 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455567777776644444443
No 82
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=62.76 E-value=10 Score=31.93 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=25.5
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 48 LDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 48 l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
++.+..-+ +.+..-..+||++|++||-.||..|..
T Consensus 80 I~lv~~q~-gvs~~~A~~AL~~~~gDl~~AI~~L~~ 114 (115)
T PRK06369 80 IELVAEQT-GVSEEEARKALEEANGDLAEAILKLSS 114 (115)
T ss_pred HHHHHHHH-CcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence 44444433 455666789999999999999998853
No 83
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=62.74 E-value=68 Score=24.62 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024305 187 MLKEQVEALIQENMILKRAVSIQHERQKEYE----DRSQELHHLKQLVSQYQEQLRTLEVNNYAL 247 (269)
Q Consensus 187 ~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e----~~~~El~~Lkql~~qyqEqir~LE~~NYaL 247 (269)
-|+..|+.|.-.|..|-.+..+.|.+-.++- ..+...-.| ++.-+|+++++.++..=-+|
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~al-rlal~ys~r~~e~~~~llal 65 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATAL-RLALKYSERCKEAYEVLLAL 65 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999999988887655433 233445556 77889999999988754444
No 84
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=62.25 E-value=31 Score=28.43 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=20.2
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKR 204 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKR 204 (269)
+.+..+...||.++..|+.||.-|+.
T Consensus 18 ~~l~~~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 18 GQLLEELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888888888887764
No 85
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.94 E-value=1.5e+02 Score=28.34 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=36.6
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYED----RSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEH 256 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~----~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 256 (269)
+++|...|.++|..|-+|+.-|.+-........++++. .-++...++.-+.++++....|+..--..+-||..-..
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555555555555544443332222222211 11334444445556666666666665556666655554
Q ss_pred cC
Q 024305 257 SN 258 (269)
Q Consensus 257 ~~ 258 (269)
-+
T Consensus 135 tN 136 (314)
T PF04111_consen 135 TN 136 (314)
T ss_dssp --
T ss_pred cC
Confidence 43
No 86
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=61.93 E-value=22 Score=33.43 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 024305 195 LIQENMILKRAVSIQ 209 (269)
Q Consensus 195 l~~eN~iLKRAv~IQ 209 (269)
+.+||.-||+.+.++
T Consensus 96 l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 96 LKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHhcCc
Confidence 444555555444443
No 87
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.70 E-value=1.1e+02 Score=31.50 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024305 225 HLKQLVSQYQEQLRTLEVNNYALTMHL 251 (269)
Q Consensus 225 ~Lkql~~qyqEqir~LE~~NYaL~~HL 251 (269)
++|..+..|+++|.-|+..--=|.+||
T Consensus 425 ~~~~~~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 425 REKEALGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHheeh
Confidence 345567778888888877777777777
No 88
>PRK10884 SH3 domain-containing protein; Provisional
Probab=61.49 E-value=85 Score=28.53 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 216 YEDRSQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 216 ~e~~~~El~~Lkql~~qyqEqir~LE~ 242 (269)
++...+|++.++.-++..+.++.+++.
T Consensus 141 n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 141 NQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455566666666665556655554
No 89
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=61.15 E-value=75 Score=24.57 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024305 221 QELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 221 ~El~~Lkql~~qyqEqir~LE~ 242 (269)
-|+..|++-+.+|+..|+.++.
T Consensus 50 ve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 50 VEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555543
No 90
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=61.10 E-value=32 Score=28.59 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=22.6
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHHH
Q 024305 178 AQSFHQENKMLKEQVEALIQENMILKR 204 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l~~eN~iLKR 204 (269)
++.+.+|...||.++..|+.||.-|+-
T Consensus 17 l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 17 LGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788899999999999999988764
No 91
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=60.86 E-value=1.2e+02 Score=29.69 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=37.2
Q ss_pred cCCCCcchHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHH
Q 024305 129 VFQLDGPEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQ 197 (269)
Q Consensus 129 ~~p~~g~eWVEl~V~EM~~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~ 197 (269)
.+|-.|.-.-|+|-+|..-.-...-|-+|+--++|+ ||.... ++++++.+...++.+|..+.-
T Consensus 71 ~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~-Ekvlk~-----aIq~i~~~~q~~~~~Lnnvas 133 (338)
T KOG3647|consen 71 DLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEV-EKVLKS-----AIQAIQVRLQSSRAQLNNVAS 133 (338)
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHH-HHHHHH-----HHHHHHHHHHHHHHHHHHHhh
Confidence 467788888888888877666666665555544443 333332 344455555555555554443
No 92
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=60.86 E-value=59 Score=25.04 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=21.7
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHH
Q 024305 178 AQSFHQENKMLKEQVEALIQENMILK 203 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l~~eN~iLK 203 (269)
...++++|..|++....|..||.-||
T Consensus 27 ~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 27 NEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34588888888888888999998888
No 93
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=60.31 E-value=59 Score=34.79 Aligned_cols=73 Identities=30% Similarity=0.333 Sum_probs=50.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 024305 140 LFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDR 219 (269)
Q Consensus 140 l~V~EM~~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~ 219 (269)
..|+||. |-+++--+|..|--+.. |+++.|...+...++.+.+ ....+
T Consensus 79 r~~~e~~--------RI~~sVs~EL~ele~kr-------qel~seI~~~n~kiEelk~-----------------~i~~~ 126 (907)
T KOG2264|consen 79 RILREQK--------RILASVSLELTELEVKR-------QELNSEIEEINTKIEELKR-----------------LIPQK 126 (907)
T ss_pred HHHHHHH--------HHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHH-----------------HHHHh
Confidence 4567763 66777777777654432 4566777766666655433 34456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 024305 220 SQELHHLKQLVSQYQEQLRTLEVNN 244 (269)
Q Consensus 220 ~~El~~Lkql~~qyqEqir~LE~~N 244 (269)
++||.+||-.++|.|-|.+.|-+.|
T Consensus 127 q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 127 QLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 7899999999999999999886655
No 94
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=59.82 E-value=1.1e+02 Score=27.69 Aligned_cols=21 Identities=43% Similarity=0.477 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhH
Q 024305 225 HLKQLVSQYQEQLRTLEVNNY 245 (269)
Q Consensus 225 ~Lkql~~qyqEqir~LE~~NY 245 (269)
.||.+=+=|.|||-+||..|-
T Consensus 145 el~~~d~fykeql~~le~k~~ 165 (187)
T PF05300_consen 145 ELKKQDAFYKEQLARLEEKNA 165 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455577789999999999884
No 95
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=59.74 E-value=1.8e+02 Score=28.87 Aligned_cols=58 Identities=29% Similarity=0.424 Sum_probs=44.9
Q ss_pred ccccCCCCCCCCCCCCCCcchhHHHHHhhC----CCCCHHHHHHHHHHcCccHHHHHHHHHhhhccc
Q 024305 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNELRLGS 88 (269)
Q Consensus 26 R~Rcssssp~r~~~~~~~~~~~l~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~L~s 88 (269)
.+||+ -.||.+- ..++.+..|+.|= =+||+..+..+++-||+||-.||--|-+|.+..
T Consensus 177 ~SRC~---KfrFk~L--~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~g 238 (346)
T KOG0989|consen 177 VSRCQ---KFRFKKL--KDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLG 238 (346)
T ss_pred HhhHH---HhcCCCc--chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccC
Confidence 45674 3466663 1256778887764 479999999999999999999999999988743
No 96
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=59.64 E-value=8.1 Score=36.88 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=29.3
Q ss_pred hhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhhhcccc
Q 024305 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGSA 89 (269)
Q Consensus 46 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~sa 89 (269)
.+|-.||..= +-.----.+||++|++|+|.||+-|..--+..+
T Consensus 6 ~~IK~LRe~T-gagm~dCKkAL~e~~gDiekAi~~LRkkG~akA 48 (290)
T TIGR00116 6 QLVKELRERT-GAGMMDCKKALTEANGDFEKAIKNLRESGIAKA 48 (290)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHcCCCHHHHHHHHHHhchhHH
Confidence 4566666551 222222679999999999999999988544443
No 97
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=59.62 E-value=1.5e+02 Score=31.64 Aligned_cols=32 Identities=31% Similarity=0.348 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024305 219 RSQELHHLKQLVSQYQEQLRTLEVNNYALTMH 250 (269)
Q Consensus 219 ~~~El~~Lkql~~qyqEqir~LE~~NYaL~~H 250 (269)
+..|+.+|+.-+-+-+|+++.||...-.|+++
T Consensus 550 lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 550 LESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55789999999999999999999988777765
No 98
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=59.38 E-value=28 Score=29.59 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=23.9
Q ss_pred HhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024305 172 RASAEAAQSFHQENKMLKEQVEALIQENMILKRAV 206 (269)
Q Consensus 172 ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv 206 (269)
.|-.|+.+.++.-+..|-++..+|-+||.+||+-+
T Consensus 63 fAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 63 FAVREEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34445566666666677777777788888888654
No 99
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=59.06 E-value=1.6e+02 Score=28.72 Aligned_cols=22 Identities=41% Similarity=0.431 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHcCccHHHHHHH
Q 024305 59 DNQILDRALEECGDDLDSAIRS 80 (269)
Q Consensus 59 d~q~le~aLe~cgndlDaAIks 80 (269)
|-..|-+.||+-+.||.-|.+.
T Consensus 63 Didavt~lLeEkerDLelaA~i 84 (306)
T PF04849_consen 63 DIDAVTRLLEEKERDLELAARI 84 (306)
T ss_pred hHHHHHHHHHHHhhhHHHHHHH
Confidence 6667889999999999888765
No 100
>PRK09377 tsf elongation factor Ts; Provisional
Probab=58.83 E-value=8 Score=36.89 Aligned_cols=43 Identities=26% Similarity=0.283 Sum_probs=29.7
Q ss_pred hhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhhhcccc
Q 024305 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGSA 89 (269)
Q Consensus 46 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~sa 89 (269)
.+|-.||.. -+-.-.--.+||++|++|+|.||+-|..--+..+
T Consensus 7 ~~IK~LR~~-Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G~akA 49 (290)
T PRK09377 7 ALVKELRER-TGAGMMDCKKALTEADGDIEKAIEWLRKKGLAKA 49 (290)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhchhhH
Confidence 456666655 2222333679999999999999999988434333
No 101
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=58.79 E-value=33 Score=32.14 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=14.6
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAV 206 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv 206 (269)
+.+||..|+.+++.|.+|+.-||+.+
T Consensus 227 leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 227 LEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555544
No 102
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=58.76 E-value=13 Score=31.52 Aligned_cols=26 Identities=46% Similarity=0.736 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHcCccHHHHHHHHH
Q 024305 57 DMDNQILDRALEECGDDLDSAIRSLN 82 (269)
Q Consensus 57 ~md~q~le~aLe~cgndlDaAIksL~ 82 (269)
+.+..-..+||++|++||-.||-.|.
T Consensus 90 gvs~e~A~~AL~~~~gDl~~AI~~L~ 115 (116)
T TIGR00264 90 NVSKEEARRALEECGGDLAEAIMKLE 115 (116)
T ss_pred CcCHHHHHHHHHHcCCCHHHHHHHhh
Confidence 44555577899999999999998774
No 103
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=58.65 E-value=18 Score=27.38 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024305 221 QELHHLKQLVSQYQEQLRTLEVNNYALTMHL 251 (269)
Q Consensus 221 ~El~~Lkql~~qyqEqir~LE~~NYaL~~HL 251 (269)
.||.-||.-+...++++..||..|.-|+-+.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3678888888888888999998888887653
No 104
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=58.61 E-value=88 Score=31.33 Aligned_cols=37 Identities=22% Similarity=0.491 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024305 202 LKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNN 244 (269)
Q Consensus 202 LKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~N 244 (269)
.|.+|--+|.+ -.++..+|...+.+|+.+++.||.+.
T Consensus 49 Ikq~FekkNqk------sa~~i~~lqkkL~~y~~~l~ele~~~ 85 (395)
T PF10267_consen 49 IKQVFEKKNQK------SAQTIAQLQKKLEQYHKRLKELEQGG 85 (395)
T ss_pred HHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44455444444 34689999999999999999999988
No 105
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=58.39 E-value=1.4e+02 Score=26.79 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=37.1
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~ 239 (269)
.....+|...|+.++....++...|+.+-.....-.+++.+...|-..|.|-+.+-+..-..
T Consensus 64 L~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erde 125 (201)
T PF13851_consen 64 LKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDE 125 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777776666666555555555555555544444443333
No 106
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=58.26 E-value=1.5e+02 Score=31.32 Aligned_cols=40 Identities=33% Similarity=0.415 Sum_probs=26.4
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYED 218 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~ 218 (269)
..+++|...|.++++...++|..|-+...=|-+|..+++.
T Consensus 90 ~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~ 129 (617)
T PF15070_consen 90 EHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEE 129 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777777776666666666666553
No 107
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=57.47 E-value=1.2e+02 Score=27.80 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=18.5
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQK 214 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~ 214 (269)
.++++||+.||+++..|..++.-+. .+.-+++|++
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~-~l~~en~~L~ 106 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELE-QLEAENARLR 106 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3456666666666666655555443 3333444433
No 108
>PHA02562 46 endonuclease subunit; Provisional
Probab=56.49 E-value=1.5e+02 Score=29.22 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh--------hHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 024305 151 IDDARARASRALEILEKSICARA--------SAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQE 222 (269)
Q Consensus 151 ~dDAraRAsRvLEafEksi~~ra--------~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E 222 (269)
+.++...+..-++.+++.+.-.- ... ..+...+.+.|+.++..+..+...|..+..-.-+...++.....+
T Consensus 260 l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~-~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~ 338 (562)
T PHA02562 260 LNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQ-ISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKK 338 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777755321 110 011133445555555555555555555555333333333333334
Q ss_pred HHHHHHHHHHHHHHH
Q 024305 223 LHHLKQLVSQYQEQL 237 (269)
Q Consensus 223 l~~Lkql~~qyqEqi 237 (269)
+..+++.+.+..+.|
T Consensus 339 i~el~~~i~~~~~~i 353 (562)
T PHA02562 339 LLELKNKISTNKQSL 353 (562)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444443333333333
No 109
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=56.30 E-value=1.8e+02 Score=27.34 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=28.1
Q ss_pred CCCcchH----HHHHHHH---HhcCCC-hHHHHHHHHHHHHHHHHHH
Q 024305 131 QLDGPEW----VELFVRE---MMSSSN-IDDARARASRALEILEKSI 169 (269)
Q Consensus 131 p~~g~eW----VEl~V~E---M~~Asd-~dDAraRAsRvLEafEksi 169 (269)
|.=.+.| .-+|..| |.-.-| +.+||.-|..||.+=++.=
T Consensus 19 ~iI~a~~~~~~L~~~~~e~~a~~~s~~il~~A~rkA~~I~q~A~~~~ 65 (224)
T PRK15354 19 NIIESQWITLQLTLFAQEQQAKRVSHAIVSSAYRKAEKIIRDAYRYQ 65 (224)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445899 6666678 766555 5789999999998766543
No 110
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=56.23 E-value=1e+02 Score=24.55 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024305 202 LKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLK 252 (269)
Q Consensus 202 LKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 252 (269)
+++.+.-=+.=.+++..+..+++..-+.+++-.++|..||..-|.|.-+.+
T Consensus 40 ~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk 90 (99)
T PF10046_consen 40 MKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSK 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344333333344455556667777777788888899999988888876654
No 111
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=55.79 E-value=75 Score=28.68 Aligned_cols=49 Identities=24% Similarity=0.235 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 024305 150 NIDDARARASRALEILEKSICAR-------ASAEAAQSFHQENKMLKEQVEALIQENMILKRA 205 (269)
Q Consensus 150 d~dDAraRAsRvLEafEksi~~r-------a~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRA 205 (269)
|+.|=- -||.+|||.+.+. .-..++. +=...+|+||-.++.|-+-||..
T Consensus 102 DItELD----VvL~~FEk~~~eYkq~ieS~~cr~AI~---~F~~~~keqL~~~i~evq~lK~l 157 (175)
T PF13097_consen 102 DITELD----VVLSAFEKTALEYKQSIESKICRKAIN---KFYSNFKEQLIEMIKEVQELKNL 157 (175)
T ss_pred cchHHH----HHHHHHHHHHHHHHHhhccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 655543 5899999998872 1122322 23345677777777777666653
No 112
>PF04803 Cor1: Cor1/Xlr/Xmr conserved region; InterPro: IPR006888 Cor1 is a component of the chromosome core in the meiotic prophase chromosomes []. Xlr is a lymphoid cell specific protein []. Xmr is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes [].
Probab=55.73 E-value=1e+02 Score=26.17 Aligned_cols=41 Identities=27% Similarity=0.428 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024305 197 QENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYAL 247 (269)
Q Consensus 197 ~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL 247 (269)
.+..+|..+-.+|..| +..+|++.+||=.-|..||.+++.+
T Consensus 75 qqQK~~qq~r~~q~Qr----------lk~iK~l~eqflK~le~le~~~~~~ 115 (130)
T PF04803_consen 75 QQQKLFQQARIVQNQR----------LKAIKELHEQFLKSLEDLEKSHDNQ 115 (130)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555 6778999999999999999998874
No 113
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=55.61 E-value=3e+02 Score=30.04 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=52.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLK 252 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 252 (269)
|+.....++.++..+.-||..|.+++ .+|-+-..+...+..+...-+.-.+.++..+|..|-+|+|-++
T Consensus 90 le~~l~e~~~~l~~~~~e~~~l~~~l---~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~ 158 (769)
T PF05911_consen 90 LEAKLAELSKRLAESAAENSALSKAL---QEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELH 158 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788899999999999988 4566666666666666666667777888888888988888764
No 114
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=55.33 E-value=2.3e+02 Score=29.80 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024305 217 EDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAE 255 (269)
Q Consensus 217 e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 255 (269)
...+.|+..+|.......+.++.|-..|--|.-+|..+-
T Consensus 151 ~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 151 SELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 346788999999999999999999999999998887654
No 115
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=55.11 E-value=20 Score=37.52 Aligned_cols=55 Identities=25% Similarity=0.269 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhHHHHHhhHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 161 ALEILEKSICARASAEAAQSFHQEN-KMLKEQVEALIQENMILKRAVSIQHERQKE 215 (269)
Q Consensus 161 vLEafEksi~~ra~ae~~~~~~kEn-~~LK~ql~~l~~eN~iLKRAv~IQheR~~e 215 (269)
||.-..+.|..|-.|.+...-+||. .-|+..|.+|+.||.+||+-=+---.|+.+
T Consensus 279 v~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~ 334 (655)
T KOG4343|consen 279 VLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDE 334 (655)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6666667777777776666666665 347777777777777777655444444444
No 116
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=54.65 E-value=31 Score=33.83 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=11.7
Q ss_pred HhhHHHhHHHHHHHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQE 198 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~e 198 (269)
.++++||..||+++..|..+
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~ 79 (337)
T PRK14872 60 LVLETENFLLKERIALLEER 79 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555433
No 117
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=54.29 E-value=1.9e+02 Score=33.35 Aligned_cols=74 Identities=30% Similarity=0.418 Sum_probs=47.8
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKR-AVS-IQHERQKEYEDR----SQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQA 254 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKR-Av~-IQheR~~e~e~~----~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 254 (269)
..++++.|.+.++.+..+-..|+| =-+ .|| .+++++++ ..+++.|+..+.+|+++++-++..|-.+.-+++..
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~-~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv 541 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQREQKALLQH-EQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKV 541 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344555566666666666666664 112 233 45555533 35567777888899999999888888887777654
Q ss_pred h
Q 024305 255 E 255 (269)
Q Consensus 255 ~ 255 (269)
-
T Consensus 542 ~ 542 (1317)
T KOG0612|consen 542 N 542 (1317)
T ss_pred H
Confidence 3
No 118
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=54.22 E-value=50 Score=32.23 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=23.6
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQ 209 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQ 209 (269)
..+..|..+|++.+..+..++.+|+.-++-|
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 4477788888888888888888888766543
No 119
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=54.20 E-value=3.2e+02 Score=29.63 Aligned_cols=81 Identities=22% Similarity=0.204 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCCC
Q 024305 185 NKMLKEQVEALIQENMILKRAVSIQHERQKEYEDR----SQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEHSNSI 260 (269)
Q Consensus 185 n~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~----~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~ 260 (269)
+..|.++.+.|.....-|-+..+--++...+|.++ ..++.+|++-++..|--+-..=..+|.|-+||-.+......
T Consensus 50 ~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t 129 (698)
T KOG0978|consen 50 FDELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNT 129 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 33455555666666666666666666666665543 36677788888888877777777889999999999976666
Q ss_pred CCCCC
Q 024305 261 PGRFH 265 (269)
Q Consensus 261 ~g~~~ 265 (269)
+|..|
T Consensus 130 ~~~~~ 134 (698)
T KOG0978|consen 130 YGNGN 134 (698)
T ss_pred CCCcc
Confidence 66543
No 120
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=54.04 E-value=23 Score=26.59 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=30.1
Q ss_pred hhCCCCCHHHHHHHHHHcCccHHHHHHHHHhhhc
Q 024305 53 AIFPDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (269)
Q Consensus 53 ~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 86 (269)
..-=+|-.+--++.||++|=|++.|++.+.+|.-
T Consensus 20 ~~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~lk~ 53 (63)
T smart00804 20 SAQTGMNAEYSQMCLEDNNWDYERALKNFTELKS 53 (63)
T ss_pred HHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 3446899999999999999999999999999874
No 121
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=53.43 E-value=57 Score=24.97 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=16.1
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILK 203 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLK 203 (269)
++.||..|++++..+..|+.-|+
T Consensus 19 L~~EN~~Lr~q~~~~~~ER~~L~ 41 (65)
T TIGR02449 19 LKSENRLLRAQEKTWREERAQLL 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777766554
No 122
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=53.27 E-value=60 Score=29.85 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHH
Q 024305 160 RALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQEN--MILKRAVSIQHERQKE-YEDRSQELHHLKQLVSQYQEQ 236 (269)
Q Consensus 160 RvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN--~iLKRAv~IQheR~~e-~e~~~~El~~Lkql~~qyqEq 236 (269)
.+.+.||.++..+..-+...+.-+ +..+...+++++++- .+-.-|.+|++.|.-. ..+..++++.+++.+..|+++
T Consensus 180 ~a~Dl~E~~~as~~~y~~l~~~f~-~~~~l~~~~~~l~~~a~~l~~ia~ai~~~~~~~~~~~l~~~l~~l~~~l~~~~~~ 258 (284)
T PF12805_consen 180 EAVDLFERALASHYDYEELREQFK-HSDVLFRFQRLLEQLAQALRQIAQAILRGRPYHHRNRLKRALEALEESLEFLRQQ 258 (284)
T ss_pred HHHHHHHHHHhccccHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 456788888888877655544333 444445555555542 3444588888766554 344667788888877777776
No 123
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=51.67 E-value=55 Score=27.05 Aligned_cols=32 Identities=13% Similarity=0.310 Sum_probs=19.1
Q ss_pred CcchHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 024305 133 DGPEWVELFVREMMSSSNIDDARARASRALEILE 166 (269)
Q Consensus 133 ~g~eWVEl~V~EM~~Asd~dDAraRAsRvLEafE 166 (269)
.|.++++-||++ .-...+++|..+--+++...
T Consensus 23 k~~k~~~~LVkk--Ge~~~ee~k~~~~e~~~~~~ 54 (118)
T TIGR01837 23 EGSKFFNRLVKE--GELAEKRGQKRFDESVDAAR 54 (118)
T ss_pred HHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHH
Confidence 456677777765 33445566666666665555
No 124
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=51.63 E-value=3e+02 Score=31.21 Aligned_cols=59 Identities=24% Similarity=0.409 Sum_probs=36.8
Q ss_pred hHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024305 181 FHQENKMLKEQVEALIQE-NMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVN 243 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~e-N~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~ 243 (269)
+++|++.|.+++..|-.| |.+...+..+|+++... ..+..+|+.-+.+|+++|+.|..+
T Consensus 406 L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i----~~~i~~l~k~i~~~~~~l~~lk~~ 465 (1074)
T KOG0250|consen 406 LKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI----EGEILQLRKKIENISEELKDLKKT 465 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444433 44455566677765432 245777888899999999999864
No 125
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=50.69 E-value=2.5e+02 Score=27.49 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024305 215 EYEDRSQELHHLKQLVSQYQEQLRTLEVN 243 (269)
Q Consensus 215 e~e~~~~El~~Lkql~~qyqEqir~LE~~ 243 (269)
|.++..+.|.+||+-+..-..+|++||.+
T Consensus 290 ElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 290 ELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44555555666666555555566666544
No 126
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=50.65 E-value=26 Score=30.80 Aligned_cols=63 Identities=30% Similarity=0.296 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024305 192 VEALIQENMILKRAVSIQHERQKEYEDR-SQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQA 254 (269)
Q Consensus 192 l~~l~~eN~iLKRAv~IQheR~~e~e~~-~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 254 (269)
.++|+.+-.-|.|+++.++-|.++.... ..-...|.+-+.+|+|-.|+|...+-=....|.++
T Consensus 72 aEkL~~Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~~~ 135 (173)
T PF07445_consen 72 AEKLVAQIEALQRELATQSLRKKESKPSSRKPIHQLYQRLAQHQEYERRLLAMIQEREQQLEQA 135 (173)
T ss_pred HHHHHHHHHHHHHHHHhccCccCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4577778888999999999888875541 24566778889999999999998877766666654
No 127
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=50.55 E-value=46 Score=29.20 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=13.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024305 182 HQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNN 244 (269)
Q Consensus 182 ~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~N 244 (269)
++.+..|.++|-.+..++.-|+.-...+..+..+ ...++..|+.-+.+..+.|+-.+..|
T Consensus 87 ~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~---l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 87 YRSKGELAQQLVELNDELQELEKELSEKERRLAE---LEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp ---------------------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444333 22334444444444444444444433
No 128
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=50.24 E-value=3.4e+02 Score=29.59 Aligned_cols=62 Identities=32% Similarity=0.471 Sum_probs=39.3
Q ss_pred chHHHHHHHHHhcCCChHHHHHHHH---------HHHHHHHHHHHHHhh----------------HHHHHhhHHHhHHHH
Q 024305 135 PEWVELFVREMMSSSNIDDARARAS---------RALEILEKSICARAS----------------AEAAQSFHQENKMLK 189 (269)
Q Consensus 135 ~eWVEl~V~EM~~Asd~dDAraRAs---------RvLEafEksi~~ra~----------------ae~~~~~~kEn~~LK 189 (269)
-+|++-.+++ ...-++.++.|-. .++.-+|+++...-. .+....+++|+..||
T Consensus 401 ie~Lee~l~e--kd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk 478 (775)
T PF10174_consen 401 IENLEEQLRE--KDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELK 478 (775)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655 5556777888887 777777777766422 233455566777777
Q ss_pred HHHHHHHHH
Q 024305 190 EQVEALIQE 198 (269)
Q Consensus 190 ~ql~~l~~e 198 (269)
..++.|..+
T Consensus 479 ~~~~~LQ~e 487 (775)
T PF10174_consen 479 AKLESLQKE 487 (775)
T ss_pred HHHHHHhhh
Confidence 766666554
No 129
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=50.22 E-value=43 Score=36.61 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 024305 201 ILKRAVSIQHERQK-EYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEH 256 (269)
Q Consensus 201 iLKRAv~IQheR~~-e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 256 (269)
-+.|++.||-++.+ ..++.+.+...-...|+..=|+++.||.+---|..||++|..
T Consensus 192 ~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~ 248 (966)
T KOG4286|consen 192 NVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEV 248 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 36789999999988 567788888888888999999999999999999999999985
No 130
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=50.22 E-value=2.9e+02 Score=29.70 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 200 MILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 200 ~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~ 242 (269)
.-++|=+.+-+..-++++.+..++..|+.-+..-.+.+..||.
T Consensus 460 ~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 460 ERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555444444444443
No 131
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=50.03 E-value=20 Score=29.90 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=13.7
Q ss_pred hhHHHhHHHHHHHHHHHHHH
Q 024305 180 SFHQENKMLKEQVEALIQEN 199 (269)
Q Consensus 180 ~~~kEn~~LK~ql~~l~~eN 199 (269)
.+++||-+||.+++.|+.-.
T Consensus 83 ~LeEENNlLklKievLLDML 102 (108)
T cd07429 83 QLEEENNLLKLKIEVLLDML 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777776543
No 132
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=49.49 E-value=51 Score=34.42 Aligned_cols=46 Identities=28% Similarity=0.442 Sum_probs=38.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 024305 207 SIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEH 256 (269)
Q Consensus 207 ~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 256 (269)
.|=+.|.+|- +|+++|.--++-|=|+||-||..|-.|..-+.....
T Consensus 32 ~ir~sR~rEK----~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~ 77 (546)
T KOG0977|consen 32 PIRDSREREK----KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRG 77 (546)
T ss_pred hhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677663 579999999999999999999999999998877665
No 133
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=49.44 E-value=1.5e+02 Score=26.30 Aligned_cols=57 Identities=26% Similarity=0.352 Sum_probs=26.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~ 239 (269)
+.+|+..|+.++..+.....-+++... +.+..+.....-|+.-||+--.|...+|++
T Consensus 132 L~~e~~~L~~~~~~l~~~~e~~ek~~~--e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 132 LEEEKEELEKQVQELKNKCEQLEKREE--ELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444444444443222 222222223345666777666666665543
No 134
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=49.40 E-value=80 Score=34.23 Aligned_cols=58 Identities=26% Similarity=0.411 Sum_probs=44.9
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024305 177 AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNN 244 (269)
Q Consensus 177 ~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~N 244 (269)
..+..++++..|-++|..+-.||+-||++++- ++.|||--+-+++...-++..||..-
T Consensus 252 ~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~----------k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 252 NPQKRSKESEFLTERLQAMEEENKMLKEALAK----------KNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999873 45567776666766666666666543
No 135
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=49.37 E-value=29 Score=35.30 Aligned_cols=53 Identities=30% Similarity=0.337 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024305 186 KMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYA 246 (269)
Q Consensus 186 ~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYa 246 (269)
..-|.++..... |.|+-+-+.+|- ||..++-.+ +.++..||.||+++|.+-|+
T Consensus 350 V~~k~e~~~k~s-Nvi~eKt~Lrqk-rq~A~e~~n------~k~~~ey~~qL~~~E~~~~~ 402 (521)
T COG5296 350 VACKDEVHPKRS-NVIHEKTELRQK-RQRAIELKN------KKAAMEYQRQLEEIEDNEGA 402 (521)
T ss_pred HHHHHhcCccch-hHHHHHHHHHHH-HHHHHHccC------HHHHHHHHHHHHHHHHhhhc
Confidence 344555555444 888888888887 766666443 34689999999999999876
No 136
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=48.55 E-value=1.4e+02 Score=31.20 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=64.6
Q ss_pred HHHHhcCCChHHHHHHHH----HHHHHHHHHHHH--HhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 142 VREMMSSSNIDDARARAS----RALEILEKSICA--RASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKE 215 (269)
Q Consensus 142 V~EM~~Asd~dDAraRAs----RvLEafEksi~~--ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e 215 (269)
+.+|..+.-.-|-|-||. -.++++++.+.. +.-...+..++.|.+.-.++++.|....--||.-|.-|---..+
T Consensus 290 a~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~ 369 (622)
T COG5185 290 AMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQ 369 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHH
Confidence 455666666666666664 355666666554 34455567788888888888988888888899988888777778
Q ss_pred HHHHHHHHHHHHHHHH
Q 024305 216 YEDRSQELHHLKQLVS 231 (269)
Q Consensus 216 ~e~~~~El~~Lkql~~ 231 (269)
++.+++|..+|-.-++
T Consensus 370 fe~mn~Ere~L~reL~ 385 (622)
T COG5185 370 FELMNQEREKLTRELD 385 (622)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8889988888765543
No 137
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=48.49 E-value=3.2e+02 Score=28.05 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHH
Q 024305 151 IDDARARASRALE 163 (269)
Q Consensus 151 ~dDAraRAsRvLE 163 (269)
+.+|+..|..+++
T Consensus 27 l~~Ae~eAe~i~k 39 (514)
T TIGR03319 27 LGSAEELAKRIIE 39 (514)
T ss_pred HHHHHHHHHHHHH
Confidence 3456666666653
No 138
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=48.30 E-value=3.3e+02 Score=29.28 Aligned_cols=26 Identities=42% Similarity=0.534 Sum_probs=13.9
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAV 206 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv 206 (269)
..++.+.+.+++++|..||..||+-+
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ 445 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKREL 445 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555543
No 139
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=47.80 E-value=19 Score=31.62 Aligned_cols=65 Identities=31% Similarity=0.364 Sum_probs=11.6
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 177 AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQK----EYEDRSQELHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 177 ~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~----e~e~~~~El~~Lkql~~qyqEqir~LE 241 (269)
-+..+..|...|+.++.+|..||.-|.--.+--..+++ +....-.++.+|+-++..|++-+....
T Consensus 16 ~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~~~ 84 (181)
T PF09311_consen 16 HLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIESR 84 (181)
T ss_dssp HHHHHHHCCHHHHT-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhccccccccc
Confidence 46678889999999999999999999877665554542 222345788888888888887665443
No 140
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=47.76 E-value=3.4e+02 Score=28.16 Aligned_cols=76 Identities=26% Similarity=0.312 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhH--HHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024305 159 SRALEILEKSICARASA--EAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQ 236 (269)
Q Consensus 159 sRvLEafEksi~~ra~a--e~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEq 236 (269)
.-.+++..|+|..+... .-..+.++|.+.+||.-..|++.-.+.+.=+.-+.+|.++ .+.....-+...|||
T Consensus 370 ~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~------~~~s~d~~I~dLqEQ 443 (493)
T KOG0804|consen 370 SSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKE------ALGSKDEKITDLQEQ 443 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 34455555665554432 1112344455555544444444444444444444444443 344444457778888
Q ss_pred HHHH
Q 024305 237 LRTL 240 (269)
Q Consensus 237 ir~L 240 (269)
||-|
T Consensus 444 lrDl 447 (493)
T KOG0804|consen 444 LRDL 447 (493)
T ss_pred HHhH
Confidence 8876
No 141
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=47.54 E-value=1.7e+02 Score=26.51 Aligned_cols=41 Identities=29% Similarity=0.369 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHH
Q 024305 162 LEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILK 203 (269)
Q Consensus 162 LEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLK 203 (269)
-.|||.+.. ++--+..+.+..||.-|.+.|.-|++|+..|.
T Consensus 143 ~~ale~~A~-~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~ 183 (206)
T PF14988_consen 143 AQALELAAK-KSLDEFTRSIKRENQQLRKELLQLIQEAQKLE 183 (206)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666443 34444667788888888888888888877664
No 142
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=47.41 E-value=23 Score=30.28 Aligned_cols=24 Identities=42% Similarity=0.504 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHcCccHHHHHHHHH
Q 024305 59 DNQILDRALEECGDDLDSAIRSLN 82 (269)
Q Consensus 59 d~q~le~aLe~cgndlDaAIksL~ 82 (269)
+..=..+||++||.||-.||=+|.
T Consensus 98 sreeA~kAL~e~~GDlaeAIm~L~ 121 (122)
T COG1308 98 SREEAIKALEEAGGDLAEAIMKLT 121 (122)
T ss_pred CHHHHHHHHHHcCCcHHHHHHHhc
Confidence 334467899999999999998875
No 143
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=46.73 E-value=2.1e+02 Score=25.49 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024305 222 ELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQA 254 (269)
Q Consensus 222 El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 254 (269)
.++++++-+..+.+.+-+---|.|+|.-|++.-
T Consensus 136 ~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k 168 (188)
T PF03962_consen 136 KIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKK 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 466666666677777777778999999999773
No 144
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=46.61 E-value=88 Score=28.32 Aligned_cols=43 Identities=28% Similarity=0.494 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024305 188 LKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQE 235 (269)
Q Consensus 188 LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqE 235 (269)
+.+++..|+.|--.|.++|+-.|.|+.+ .-+-+-|.+.+|||.
T Consensus 82 meK~~~~LL~EELkLqe~~A~e~~~~~~-----~~lleAkk~asqYQk 124 (176)
T PF06364_consen 82 MEKNFVDLLSEELKLQEAVANENQRRAD-----MALLEAKKMASQYQK 124 (176)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 3345667778888899999988877655 346777889999994
No 145
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=46.49 E-value=1.5e+02 Score=23.55 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024305 194 ALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMH 250 (269)
Q Consensus 194 ~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~H 250 (269)
.|+++|.-||+=+ +.++.|.+..+.-+..|+.-+-.|-+==+.||..+-.+..+
T Consensus 2 ~Li~qNk~L~~kL---~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 2 ELIKQNKELKKKL---NDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp ----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677777777654 34556666677777777777777777778888888887774
No 146
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=46.40 E-value=44 Score=24.19 Aligned_cols=24 Identities=38% Similarity=0.332 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 186 KMLKEQVEALIQENMILKRAVSIQ 209 (269)
Q Consensus 186 ~~LK~ql~~l~~eN~iLKRAv~IQ 209 (269)
..||+|++.|..+-++|..+|.++
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~y 25 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQY 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777777777766654
No 147
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=46.28 E-value=3.5e+02 Score=27.87 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=11.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 024305 150 NIDDARARASRALEILEKSICA 171 (269)
Q Consensus 150 d~dDAraRAsRvLEafEksi~~ 171 (269)
.+.+.+.|=.++.+.+++....
T Consensus 79 ~l~~~~~~l~~~~~~l~~~~~~ 100 (779)
T PRK11091 79 QLEESRQRLSRLVAKLEEMRER 100 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555443
No 148
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.75 E-value=85 Score=24.66 Aligned_cols=45 Identities=24% Similarity=0.343 Sum_probs=28.7
Q ss_pred HHHHHHHHHH---HhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024305 162 LEILEKSICA---RASAEAAQSFHQENKMLKEQVEALIQENMILKRAV 206 (269)
Q Consensus 162 LEafEksi~~---ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv 206 (269)
|..||+-+-. ++.+.-.+.+..+...||.+...+..+|..|+.-+
T Consensus 51 L~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 51 LQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444443332 34444456677788888888888888888887543
No 149
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=45.70 E-value=2e+02 Score=24.74 Aligned_cols=72 Identities=28% Similarity=0.355 Sum_probs=47.1
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRAV-----SIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHL 251 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRAv-----~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL 251 (269)
..++-||..|.++++.=-.|=.-||+.. .+.|.|-+-.. ...+...+++-+...++.+..+...-|.+....
T Consensus 45 eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~-~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHF-LSEELERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455588888888876666666666544 35666665433 456677777777777777777777766665543
No 150
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=45.58 E-value=1.2e+02 Score=25.79 Aligned_cols=44 Identities=27% Similarity=0.449 Sum_probs=28.6
Q ss_pred CCcchHHHHHHHH--------------HhcC------CChHHHHHHHHHHHHHHHHHHHHHhhH
Q 024305 132 LDGPEWVELFVRE--------------MMSS------SNIDDARARASRALEILEKSICARASA 175 (269)
Q Consensus 132 ~~g~eWVEl~V~E--------------M~~A------sd~dDAraRAsRvLEafEksi~~ra~a 175 (269)
..|+.|++.||++ +... +-++|.+.||..-+.-+|+.+-.|...
T Consensus 35 ~EG~k~F~~LVk~Ge~~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~ 98 (132)
T PF05597_consen 35 EEGSKVFEALVKEGEKLEKKTRKKAEEQVEEARDQVKSRVDDVKERATGQWDKLEQAFDERVAR 98 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777754 2211 235677788877777777777776653
No 151
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=45.24 E-value=86 Score=25.81 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 024305 218 DRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEH 256 (269)
Q Consensus 218 ~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 256 (269)
....++..||+.+.+--|.=.+|..-|.-|+-+|.+..+
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355677777777777777777888888888888877654
No 152
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=45.01 E-value=4.5e+02 Score=29.60 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024305 221 QELHHLKQLVSQYQEQLRTLEVNNYALTMHLK 252 (269)
Q Consensus 221 ~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 252 (269)
+++..+...+.+.+++.......--.+...++
T Consensus 469 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 500 (1201)
T PF12128_consen 469 EQLEQADKRLEQAQEQQNQAQQAVEELQAEEQ 500 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555554444444444444333
No 153
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=45.01 E-value=3.1e+02 Score=26.92 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=15.3
Q ss_pred HHHHHHHHcCccHHHHHHHHHhhhc
Q 024305 62 ILDRALEECGDDLDSAIRSLNELRL 86 (269)
Q Consensus 62 ~le~aLe~cgndlDaAIksL~~L~L 86 (269)
.|++=+.+-...|+.|-+.|.+++.
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666643
No 154
>PRK03918 chromosome segregation protein; Provisional
Probab=44.89 E-value=4e+02 Score=28.07 Aligned_cols=15 Identities=20% Similarity=0.569 Sum_probs=8.2
Q ss_pred CCCcchhHHHHH-hhC
Q 024305 41 RSSRSHLLDQLA-AIF 55 (269)
Q Consensus 41 ~~~~~~~l~~L~-~lF 55 (269)
+++..++++++. +||
T Consensus 33 G~GKStil~ai~~~l~ 48 (880)
T PRK03918 33 GSGKSSILEAILVGLY 48 (880)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 344566666665 345
No 155
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=44.62 E-value=2.3e+02 Score=25.21 Aligned_cols=85 Identities=20% Similarity=0.294 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHH
Q 024305 151 IDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQ-HERQKEYEDRSQELHHLKQL 229 (269)
Q Consensus 151 ~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQ-heR~~e~e~~~~El~~Lkql 229 (269)
+++.+.+-..+-+.+|.+-..|...+ |-..+-+.++.|..++.-|+.=+.-. ..=-..++.+.+++..++..
T Consensus 78 ~~~~~~~i~~l~~~i~~~~~~r~~~~-------eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~ 150 (188)
T PF03962_consen 78 IEELEKKIEELEEKIEEAKKGREESE-------EREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEA 150 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 34556666666666666644443332 22333334444444444444433310 00112344566677777777
Q ss_pred HHHHHHHHHHHHh
Q 024305 230 VSQYQEQLRTLEV 242 (269)
Q Consensus 230 ~~qyqEqir~LE~ 242 (269)
+..|-+-|=.|+.
T Consensus 151 anrwTDNI~~l~~ 163 (188)
T PF03962_consen 151 ANRWTDNIFSLKS 163 (188)
T ss_pred HHHHHhhHHHHHH
Confidence 7777777766653
No 156
>PRK11459 multidrug resistance outer membrane protein MdtQ; Provisional
Probab=44.46 E-value=3.2e+02 Score=26.87 Aligned_cols=107 Identities=14% Similarity=0.082 Sum_probs=76.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024305 149 SNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQ 228 (269)
Q Consensus 149 sd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkq 228 (269)
..++-|+++.......|++.+..-.. |. .+-.-....+.+++....+.-...++++.+...|.+.=-.---+|-+-+.
T Consensus 368 a~~~~A~a~~~~a~~~y~~t~~~a~~-eV-~~a~~~~~~~~~~~~~~~~~~~~a~~~~~la~~ry~~G~~~~l~vl~aq~ 445 (478)
T PRK11459 368 ANLDIAKAQSNLSIASYNKAVVDAVN-DV-ARAASQVETLAEKNQHQQQIERDALRVVGLAQARFNAGIIAGSRVSEAKI 445 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 35567788888888899998887444 23 33444556777888888888888899999998887742223345555566
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 024305 229 LVSQYQEQLRTLEVNNYALTMHLKQAEHS 257 (269)
Q Consensus 229 l~~qyqEqir~LE~~NYaL~~HL~qA~~~ 257 (269)
-+-+.+.++-+++.+...-.+.|-+|-.+
T Consensus 446 ~~l~~~~~~~~~~~~~~~~~v~L~~ALGG 474 (478)
T PRK11459 446 PALRERANGLLLQGQWLDASIQLTSALGG 474 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 67777777778888888888888777643
No 157
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=44.33 E-value=37 Score=28.67 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.2
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHHHHH
Q 024305 177 AAQSFHQENKMLKEQVEALIQENMILK 203 (269)
Q Consensus 177 ~~~~~~kEn~~LK~ql~~l~~eN~iLK 203 (269)
....+..|...||++++.|+.||..|.
T Consensus 16 ~l~~l~~el~~lK~~l~~lvEEN~~L~ 42 (114)
T COG4467 16 QLGVLLAELGGLKQHLGSLVEENTALR 42 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345588899999999999999999874
No 158
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=44.19 E-value=2.3e+02 Score=27.08 Aligned_cols=63 Identities=16% Similarity=0.290 Sum_probs=48.4
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 177 AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 177 ~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~ 242 (269)
.-..|.+|..-+-..+..|-+||..+|+-+---+. ..-++..|...+.+-+..++.|+..||-
T Consensus 238 ~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~---~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 238 VFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNK---ALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778888888899999999999987665543 3334777788888888888888888874
No 159
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=44.04 E-value=1.5e+02 Score=30.16 Aligned_cols=36 Identities=17% Similarity=0.454 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 200 MILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 200 ~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE 241 (269)
.-+|.+|--||++. .++..+|...+.||.+++|-+|
T Consensus 83 ~rIkq~FEkkNqks------ahtiaqlqkkL~~y~~rLkeie 118 (455)
T KOG3850|consen 83 ARIKQVFEKKNQKS------AHTIAQLQKKLEQYHRRLKEIE 118 (455)
T ss_pred HHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777663 3578899999999999999999
No 160
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=43.98 E-value=1.4e+02 Score=25.62 Aligned_cols=18 Identities=50% Similarity=0.591 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024305 190 EQVEALIQENMILKRAVS 207 (269)
Q Consensus 190 ~ql~~l~~eN~iLKRAv~ 207 (269)
|.+..|..||..||-|+.
T Consensus 85 ETI~~lk~EN~fLKeAl~ 102 (126)
T PF13118_consen 85 ETIEALKNENRFLKEALY 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 458899999999999875
No 161
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=43.72 E-value=21 Score=35.04 Aligned_cols=41 Identities=32% Similarity=0.310 Sum_probs=31.1
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhhhc
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 86 (269)
.++|.+||.-= +-.---..++|++||+||+-|-+-|+.=..
T Consensus 47 ~allk~LR~kT-gas~~ncKkALee~~gDl~~A~~~L~k~aq 87 (340)
T KOG1071|consen 47 KALLKKLREKT-GASMVNCKKALEECGGDLVLAEEWLHKKAQ 87 (340)
T ss_pred HHHHHHHHHHc-CCcHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 67888888642 222234789999999999999999987533
No 162
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=43.66 E-value=1.9e+02 Score=23.92 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 024305 151 IDDARARASRALEILEKSICARAS 174 (269)
Q Consensus 151 ~dDAraRAsRvLEafEksi~~ra~ 174 (269)
+++.+.+|..-.+-+|+.+.++..
T Consensus 61 ~~~~~~~~~~~~~~le~~~~~~v~ 84 (118)
T TIGR01837 61 LEQTRDQVQRNWDKLEKAFDERVE 84 (118)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455555555555555555555443
No 163
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=43.62 E-value=3.1e+02 Score=28.72 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=9.7
Q ss_pred HHHHHHHcCccHHHHHHHHHhh
Q 024305 63 LDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 63 le~aLe~cgndlDaAIksL~~L 84 (269)
|++=|++-...|+.|-+.|..+
T Consensus 199 L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 199 LAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444
No 164
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=43.61 E-value=2.6e+02 Score=25.64 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHH
Q 024305 156 ARASRALEILEKSICARASAE 176 (269)
Q Consensus 156 aRAsRvLEafEksi~~ra~ae 176 (269)
+||-.|-..|-+-...-+..|
T Consensus 84 ~~AE~~Y~~F~~Qt~~LA~~e 104 (192)
T PF11180_consen 84 ARAEAIYRDFAQQTARLADVE 104 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 577788888877766666654
No 165
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=43.23 E-value=2.9e+02 Score=26.08 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Q 024305 190 EQVEALIQENMILKRAVSIQHERQKEYEDRS--QELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 190 ~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~--~El~~Lkql~~qyqEqir~LE~ 242 (269)
.+|..|+++..-+|+++..||+...+.=... .||.. +-.+|++-.+..|.
T Consensus 98 ~kLs~L~~~k~~~rK~~~~~~q~i~~e~~~~t~~eveK---~Kk~Y~~~c~~~e~ 149 (237)
T cd07685 98 SKLSLLIRDKQQLRKTFSEQWQLLKQEYTKTTQQDIEK---LKSQYRSLAKDSAQ 149 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 6788999999999999999999988533221 24444 44577777666553
No 166
>PLN02939 transferase, transferring glycosyl groups
Probab=43.18 E-value=3e+02 Score=30.90 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 188 LKEQVEALIQENMILKRAVSIQHERQ 213 (269)
Q Consensus 188 LK~ql~~l~~eN~iLKRAv~IQheR~ 213 (269)
|-+.+..|..||.+||..+..--.-.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAEL 249 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45566677777777777654443333
No 167
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=43.12 E-value=2.1e+02 Score=28.25 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024305 221 QELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQA 254 (269)
Q Consensus 221 ~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 254 (269)
..++.+++...++.++++.|+..-..|.--|+..
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444455555555554444444444433
No 168
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=42.60 E-value=43 Score=32.46 Aligned_cols=36 Identities=31% Similarity=0.379 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024305 187 MLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQ 232 (269)
Q Consensus 187 ~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~q 232 (269)
.|-.+++.|.+.|.-||+=+ . .+.+|++-|||++..
T Consensus 252 ~l~ge~~~Le~rN~~LK~qa-------~---~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 252 ALLGELEGLEKRNEELKDQA-------S---ELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------H---HHHHHHHHHHHHHHH
Confidence 34455555555555555411 1 134556666665544
No 169
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=42.13 E-value=42 Score=26.92 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024305 215 EYEDRSQELHHLKQLVSQYQEQLRTLEVNNYAL 247 (269)
Q Consensus 215 e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL 247 (269)
.+++.++|....++-+.||+.+++.|+..---|
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888889999999999988664433
No 170
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=41.66 E-value=4.2e+02 Score=27.47 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=11.9
Q ss_pred CCCCCCCcchhHHHHHhhC
Q 024305 37 FSPPRSSRSHLLDQLAAIF 55 (269)
Q Consensus 37 ~~~~~~~~~~~l~~L~~lF 55 (269)
+++.+.++.++++.+...|
T Consensus 34 ~G~Ng~GKttll~ai~~~L 52 (650)
T TIGR03185 34 GGLNGAGKTTLLDAIQLAL 52 (650)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4444455778888875544
No 171
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=41.60 E-value=1.6e+02 Score=28.60 Aligned_cols=66 Identities=20% Similarity=0.298 Sum_probs=44.6
Q ss_pred HhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 172 RASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTL 240 (269)
Q Consensus 172 ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~L 240 (269)
|--.+.++++..+-+.||+|.+...+--+||-+-++- |-+|..+..-.++.||+-..=.--|+|++
T Consensus 104 rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~---kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~ 169 (330)
T KOG2991|consen 104 RLLSDDITNLKESEEKLKQQQQEAARRENILVMRLAT---KEQEMQECTSQIQYLKQQQQPSVAQLRST 169 (330)
T ss_pred chhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 4445677889999999999998888777777655543 44455555566666666555555566654
No 172
>PLN03025 replication factor C subunit; Provisional
Probab=41.51 E-value=56 Score=30.38 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=41.7
Q ss_pred ccccCCCCCCCCCCCCCCcchhHHHHHhhC----CCCCHHHHHHHHHHcCccHHHHHHHHHhhhc
Q 024305 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (269)
Q Consensus 26 R~Rcssssp~r~~~~~~~~~~~l~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~L 86 (269)
|.||- .++|.++. .+.++..|..++ =.++++.++.+++.||.|+-.||..|.....
T Consensus 147 ~SRc~---~i~f~~l~--~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~ 206 (319)
T PLN03025 147 QSRCA---IVRFSRLS--DQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHS 206 (319)
T ss_pred HHhhh---cccCCCCC--HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 44663 56777742 366777777664 3578999999999999999999999875443
No 173
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=41.51 E-value=3.7e+02 Score=26.71 Aligned_cols=82 Identities=27% Similarity=0.251 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhH----------HHhHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----HHhHHH
Q 024305 156 ARASRALEILEKSICARASAEAAQSFH----------QENKMLKEQVEALIQEN--MILKRAVSIQHER-----QKEYED 218 (269)
Q Consensus 156 aRAsRvLEafEksi~~ra~ae~~~~~~----------kEn~~LK~ql~~l~~eN--~iLKRAv~IQheR-----~~e~e~ 218 (269)
.|-.|-||--||--.++-+.+...... +|...+.+--..-.++. .+||+-|-.|..| +++.+.
T Consensus 322 e~kkrqlerqekqeleqmaeeekkr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieareerrkqkeeek 401 (445)
T KOG2891|consen 322 EIKKRQLERQEKQELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKEEEK 401 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 455666666666555555444332222 22223222222223344 6889988666544 345555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024305 219 RSQELHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 219 ~~~El~~Lkql~~qyqEqir~LE 241 (269)
...|.+..|+ .+|+|+.-|
T Consensus 402 lk~e~qkike----leek~~eee 420 (445)
T KOG2891|consen 402 LKAEEQKIKE----LEEKIKEEE 420 (445)
T ss_pred HHHHHHHHHH----HHHHHHHHH
Confidence 6666666555 455555433
No 174
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=41.49 E-value=3.3e+02 Score=27.23 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=14.1
Q ss_pred hhHHHhHHHHHHHHHHHHHH
Q 024305 180 SFHQENKMLKEQVEALIQEN 199 (269)
Q Consensus 180 ~~~kEn~~LK~ql~~l~~eN 199 (269)
..+.++..|+.++..+..+.
T Consensus 64 ~~~~~~~~L~~ql~~~~~~~ 83 (390)
T PRK10920 64 NQTATNDALANQLTALQKAQ 83 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35667888888887776653
No 175
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=41.47 E-value=2.2e+02 Score=28.12 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024305 218 DRSQELHHLKQLVSQYQEQLRTLEVN 243 (269)
Q Consensus 218 ~~~~El~~Lkql~~qyqEqir~LE~~ 243 (269)
...+...+|++.+.+.++++..|+..
T Consensus 379 ~l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 379 KLKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555443
No 176
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=41.34 E-value=2.1e+02 Score=28.69 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 191 QVEALIQENMILKRAVSIQHERQK-EYEDRSQELHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 191 ql~~l~~eN~iLKRAv~IQheR~~-e~e~~~~El~~Lkql~~qyqEqir~LE 241 (269)
.++.+..|-.-||..++-=-||.. .+.++.+++++ .++.||-+|-.||
T Consensus 270 ~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E---~~Es~qtRisklE 318 (395)
T PF10267_consen 270 LTELHQNEIYNLKQELASMEEKMAYQSYERARDIWE---VMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHH
Confidence 344556677777777665555554 44456666666 7888888888888
No 177
>PF14645 Chibby: Chibby family
Probab=40.91 E-value=32 Score=28.62 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=20.8
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSI 208 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~I 208 (269)
...++..|+++...|..||+.||-=+-|
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~el 96 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIEL 96 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888754443
No 178
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=40.85 E-value=1.2e+02 Score=22.75 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024305 222 ELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAE 255 (269)
Q Consensus 222 El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 255 (269)
-+.+|.+.|.+-|.+|.+|+...=.|.-.|+...
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677777888889999999998888888887766
No 179
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=40.03 E-value=2e+02 Score=26.60 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=32.0
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHh-hHH----HHHhhHHHhHHHHHHHHHHHH
Q 024305 146 MSSSNIDDARARASRALEILEKSICARA-SAE----AAQSFHQENKMLKEQVEALIQ 197 (269)
Q Consensus 146 ~~Asd~dDAraRAsRvLEafEksi~~ra-~ae----~~~~~~kEn~~LK~ql~~l~~ 197 (269)
..++.|.|||.|=.-|.+.=|++...-= +-| ...++..+-..|+++.+++..
T Consensus 43 ~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L~~~w~~l~~ 99 (214)
T PRK11166 43 EAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKALDARWDEWFA 99 (214)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc
Confidence 3678889999997777777666654421 111 223455566677777666554
No 180
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=39.77 E-value=99 Score=32.71 Aligned_cols=47 Identities=32% Similarity=0.387 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHH
Q 024305 155 RARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILK 203 (269)
Q Consensus 155 raRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLK 203 (269)
|-|=...++.+|.=+-+--. .-+.|.+||..||.||+.|..||..||
T Consensus 297 RkKKKEy~~~Le~rLq~ll~--Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 297 RKKKKEYMLGLEARLQALLS--ENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 33444456666655544222 235689999999999999999999886
No 181
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=39.40 E-value=3e+02 Score=27.14 Aligned_cols=67 Identities=22% Similarity=0.282 Sum_probs=41.4
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHH
Q 024305 177 AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQ-LVSQYQEQLRTLEVNNYA 246 (269)
Q Consensus 177 ~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkq-l~~qyqEqir~LE~~NYa 246 (269)
..+++|+.+...|++++.+.+--.--...+.-|-.|.++... .++.++. .-.+-.+.++.||.+-.-
T Consensus 12 efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~---sLk~~~~~~~~e~~~~i~~L~~~Ik~ 79 (330)
T PF07851_consen 12 EFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKK---SLKRCKKSLSAEERELIEKLEEDIKE 79 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccCCChhHHHHHHHHHHHHHH
Confidence 345678888888888888887777777778888877777443 3444421 122334445555544333
No 182
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=39.36 E-value=2.8e+02 Score=28.10 Aligned_cols=57 Identities=26% Similarity=0.288 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH---hhHHHHHh--hHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024305 150 NIDDARARASRALEILEKSICAR---ASAEAAQS--FHQENKMLKEQVEALIQENMILKRAV 206 (269)
Q Consensus 150 d~dDAraRAsRvLEafEksi~~r---a~ae~~~~--~~kEn~~LK~ql~~l~~eN~iLKRAv 206 (269)
-+.|=|+||.|+|+.=||-|..= +..+..+. ..-|...||...+-+..|+..|.+-+
T Consensus 236 el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 236 ELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999988751 22211110 00245566777777777777777666
No 183
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=39.26 E-value=2e+02 Score=29.78 Aligned_cols=13 Identities=46% Similarity=0.389 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHH
Q 024305 223 LHHLKQLVSQYQE 235 (269)
Q Consensus 223 l~~Lkql~~qyqE 235 (269)
--.|.|++.||||
T Consensus 145 k~~lEq~leqeqe 157 (552)
T KOG2129|consen 145 KLPLEQLLEQEQE 157 (552)
T ss_pred hccHHHHHHHHHH
Confidence 3346688999994
No 184
>PRK00106 hypothetical protein; Provisional
Probab=39.12 E-value=4.7e+02 Score=27.29 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHH
Q 024305 152 DDARARASRALE 163 (269)
Q Consensus 152 dDAraRAsRvLE 163 (269)
.+|++.|..+++
T Consensus 49 eeAe~eAe~I~k 60 (535)
T PRK00106 49 GKAERDAEHIKK 60 (535)
T ss_pred HHHHHHHHHHHH
Confidence 466777766653
No 185
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=39.04 E-value=13 Score=26.62 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHcCccHHHHHHHHHhhhc
Q 024305 57 DMDNQILDRALEECGDDLDSAIRSLNELRL 86 (269)
Q Consensus 57 ~md~q~le~aLe~cgndlDaAIksL~~L~L 86 (269)
+|.++.-.+.|+++|=|++.||..+.+|.-
T Consensus 12 gmn~~~s~~CL~~n~Wd~~~A~~~F~~l~~ 41 (51)
T PF03943_consen 12 GMNLEWSQKCLEENNWDYERALQNFEELKA 41 (51)
T ss_dssp SS-CCHHHHHHHHTTT-CCHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 677788899999999999999999998764
No 186
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=38.83 E-value=82 Score=24.36 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=31.3
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHH
Q 024305 177 AAQSFHQENKMLKEQVEALIQENMIL----KRAVSIQHERQ-KEYEDRSQELHHLKQLVSQYQEQL 237 (269)
Q Consensus 177 ~~~~~~kEn~~LK~ql~~l~~eN~iL----KRAv~IQheR~-~e~e~~~~El~~Lkql~~qyqEqi 237 (269)
....++|||=-||-.+--|-..-.-+ -+.+.-++--. -+.+.+.+|++.+++++.+.+..|
T Consensus 8 ~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 8 QIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567777776665554333222200 01222222222 255566677777777777766544
No 187
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=38.54 E-value=3.4e+02 Score=29.43 Aligned_cols=48 Identities=25% Similarity=0.312 Sum_probs=39.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcC
Q 024305 211 ERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEHSN 258 (269)
Q Consensus 211 eR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~ 258 (269)
+-+.|.++.++...+||+++.|-|-.+-+|+-..-.-...++.+.+.+
T Consensus 104 el~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 345578888889999999999999999999888877777777776544
No 188
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=38.45 E-value=2.4e+02 Score=31.06 Aligned_cols=33 Identities=27% Similarity=0.224 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024305 221 QELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQ 253 (269)
Q Consensus 221 ~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 253 (269)
.||.+...-+..||=.+.+-|..|-.|..-|||
T Consensus 501 ~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQ 533 (861)
T PF15254_consen 501 IEVEEALVNVKSLQFKLEASEKENQILGITLRQ 533 (861)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHH
Confidence 345555555666777777777777777777666
No 189
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.08 E-value=5.3e+02 Score=29.28 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024305 222 ELHHLKQLVSQYQEQLRTLEVNNYALTMHL 251 (269)
Q Consensus 222 El~~Lkql~~qyqEqir~LE~~NYaL~~HL 251 (269)
++..|+..+.+..+.|+.++..---|.-.+
T Consensus 889 ~L~el~~el~~l~~~~~~~~~~~~~~~~~~ 918 (1311)
T TIGR00606 889 QLVELSTEVQSLIREIKDAKEQDSPLETFL 918 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 344444444444444444444443333333
No 190
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=38.06 E-value=40 Score=29.99 Aligned_cols=30 Identities=40% Similarity=0.486 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 203 KRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (269)
Q Consensus 203 KRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~ 239 (269)
|-.+.|..+|++| |+..|||-+ .-||+++.
T Consensus 26 KE~L~~~~QRLkD------E~RDLKqEl-~V~ek~~~ 55 (166)
T PF04880_consen 26 KENLREEVQRLKD------ELRDLKQEL-IVQEKLRK 55 (166)
T ss_dssp HHHHHHCH-----------------------------
T ss_pred HHHHHHHHHHHHH------HHHHHHHHH-HHHHHhhh
Confidence 5566788888886 666777766 55666553
No 191
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=37.47 E-value=6.3e+02 Score=28.29 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 024305 220 SQELHHLKQLVSQYQEQLRTLEVN 243 (269)
Q Consensus 220 ~~El~~Lkql~~qyqEqir~LE~~ 243 (269)
+.+++.+++.+..++.++-+||..
T Consensus 473 ~~~~~~~~~~l~~~~~~~~~l~~~ 496 (1163)
T COG1196 473 QEELQRLEKELSSLEARLDRLEAE 496 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555543
No 192
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.29 E-value=4.8e+02 Score=26.86 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=35.2
Q ss_pred chhHHHHHhhC----CCCCHHHHHHHHHHcCccHHHHHHHHHhhhcc
Q 024305 45 SHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNELRLG 87 (269)
Q Consensus 45 ~~~l~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~L~ 87 (269)
..++..|..++ =.++++.++.+.+.||.|+..|+.-|..|.+.
T Consensus 182 ~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y 228 (585)
T PRK14950 182 ADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATT 228 (585)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 55667777653 24889999999999999999999999998763
No 193
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=37.13 E-value=1.9e+02 Score=29.87 Aligned_cols=13 Identities=15% Similarity=0.043 Sum_probs=8.2
Q ss_pred CcchHHHHHHHHH
Q 024305 133 DGPEWVELFVREM 145 (269)
Q Consensus 133 ~g~eWVEl~V~EM 145 (269)
|=..-|+..+.+|
T Consensus 53 ~~~~vV~~~Fddk 65 (475)
T PRK13729 53 DMTGVVDTTFDDK 65 (475)
T ss_pred CccceecchhHHH
Confidence 3344677777777
No 194
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=36.29 E-value=1e+02 Score=29.10 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=8.6
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 024305 212 RQKEYEDRSQELHHLKQLV 230 (269)
Q Consensus 212 R~~e~e~~~~El~~Lkql~ 230 (269)
++.+.+...+|.++||.++
T Consensus 88 ~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 88 LLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334444444455555444
No 195
>PRK14011 prefoldin subunit alpha; Provisional
Probab=35.11 E-value=58 Score=28.08 Aligned_cols=27 Identities=11% Similarity=0.302 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 215 EYEDRSQELHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 215 e~e~~~~El~~Lkql~~qyqEqir~LE 241 (269)
+.+..+++++.|+.....|.+-+.+|+
T Consensus 18 qie~L~~si~~L~~a~~e~~~~ie~L~ 44 (144)
T PRK14011 18 QVQKLQEELSSIDMMKMELLKSIESME 44 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888888888888887
No 196
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=34.88 E-value=2.6e+02 Score=23.10 Aligned_cols=89 Identities=22% Similarity=0.261 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHH
Q 024305 157 RASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYED-RSQELHHLKQLVSQYQE 235 (269)
Q Consensus 157 RAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~-~~~El~~Lkql~~qyqE 235 (269)
+|..+=+=||.=+..|+.. -++...||+++..+..+..-|+..+..........+. -..+-..|+.-+...+.
T Consensus 39 ~a~~Aq~~YE~El~~Ha~~------~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 39 IAQEAQQKYERELVKHAED------IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQ 112 (132)
T ss_pred HHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333444455555555443 2345566666777766667776666666666555443 34566778888999999
Q ss_pred HHHHHHhhhHHHHHHH
Q 024305 236 QLRTLEVNNYALTMHL 251 (269)
Q Consensus 236 qir~LE~~NYaL~~HL 251 (269)
++.-|...|=-|--+|
T Consensus 113 r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 113 RIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887666
No 197
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=34.85 E-value=59 Score=30.06 Aligned_cols=53 Identities=8% Similarity=0.149 Sum_probs=40.1
Q ss_pred ccccCCCCCCCCCCCCCCcchhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 26 R~Rcssssp~r~~~~~~~~~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
|+||- .++|.++.. +.+...|...|+.+++..+++++.-||.....|++-+.+
T Consensus 141 ~SRc~---~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~~~a~~~~~~ 193 (313)
T PRK05564 141 KSRCQ---IYKLNRLSK--EEIEKFISYKYNDIKEEEKKSAIAFSDGIPGKVEKFIED 193 (313)
T ss_pred Hhhce---eeeCCCcCH--HHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 77884 566766322 667788999999999998999999999888877765543
No 198
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=34.73 E-value=7.2e+02 Score=28.57 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024305 189 KEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLK 227 (269)
Q Consensus 189 K~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lk 227 (269)
..-+++-..+|..+.+-+..||++..++++..+..+.|+
T Consensus 456 ~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknln 494 (1195)
T KOG4643|consen 456 TRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLN 494 (1195)
T ss_pred HHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455777778888888888777776444344433
No 199
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.70 E-value=86 Score=27.20 Aligned_cols=35 Identities=37% Similarity=0.500 Sum_probs=28.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024305 214 KEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALT 248 (269)
Q Consensus 214 ~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~ 248 (269)
+-|++..+||..|-+--..-.|++-.||+..|++-
T Consensus 10 ~~ye~~kaEL~elikkrqe~eetl~nLe~qIY~~E 44 (135)
T KOG3856|consen 10 KSYEDTKAELAELIKKRQELEETLANLERQIYAFE 44 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677778888877777778889999999999984
No 200
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=34.62 E-value=9.3e+02 Score=29.36 Aligned_cols=86 Identities=20% Similarity=0.353 Sum_probs=57.3
Q ss_pred CCCcchHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 131 QLDGPEWVELFVREMMS-SSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQ 209 (269)
Q Consensus 131 p~~g~eWVEl~V~EM~~-Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQ 209 (269)
.+.-.+|--.+..+... ...++++|.+...=|+.++..+..-... ...+.+=...|...++.+.-+..-...+++-.
T Consensus 1356 ~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~--~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~l 1433 (1930)
T KOG0161|consen 1356 NAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAK--NASLEKAKNRLQQELEDLQLDLERSRAAVAAL 1433 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34668899888888776 8899999999999999999988774433 22233333444555555555555555555555
Q ss_pred HHHHHhHHH
Q 024305 210 HERQKEYED 218 (269)
Q Consensus 210 heR~~e~e~ 218 (269)
...++-++.
T Consensus 1434 e~k~k~f~k 1442 (1930)
T KOG0161|consen 1434 EKKQKRFEK 1442 (1930)
T ss_pred HHHHHHHHH
Confidence 555555443
No 201
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=34.57 E-value=60 Score=30.58 Aligned_cols=44 Identities=30% Similarity=0.465 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHH
Q 024305 150 NIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQ 197 (269)
Q Consensus 150 d~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~ 197 (269)
+..|=|+ |++++|++.|.+.-....+ +|.||-+++++|++.+.+
T Consensus 182 ~~PDP~A-Aa~vve~lnk~~~l~V~td---~L~keAe~i~~~lekl~e 225 (244)
T COG1938 182 DRPDPRA-AARVVEALNKMLGLNVDTD---KLEKEAEEIEEQLEKLAE 225 (244)
T ss_pred CCCChHH-HHHHHHHHHHHhcCccCHH---HHHHHHHHHHHHHHHHHH
Confidence 3446665 7899999999988776664 477887777777766554
No 202
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.40 E-value=4.8e+02 Score=25.99 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=48.7
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhhHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQL---------RTLEVNNYALTMHL 251 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqi---------r~LE~~NYaL~~HL 251 (269)
..++.+.|.+++..+++-....|.+|.-=..-.+-.+..++++...+..+.++..++ +..|..++-+.-+.
T Consensus 354 ~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~ 433 (503)
T KOG2273|consen 354 AEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKV 433 (503)
T ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHH
Confidence 577888999999999999888888886544434444556666666666666666666 44455555555444
Q ss_pred HH
Q 024305 252 KQ 253 (269)
Q Consensus 252 ~q 253 (269)
.+
T Consensus 434 ~~ 435 (503)
T KOG2273|consen 434 NE 435 (503)
T ss_pred HH
Confidence 33
No 203
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=34.36 E-value=2.1e+02 Score=25.55 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=12.9
Q ss_pred hHHHhHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMIL 202 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iL 202 (269)
+.+||..|++++..|..+|.-|
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~L 123 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEEL 123 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666655555444
No 204
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=34.02 E-value=5.8e+02 Score=27.06 Aligned_cols=71 Identities=30% Similarity=0.404 Sum_probs=34.6
Q ss_pred hHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024305 185 NKMLKEQVEA-------LIQENMILKRAVSIQHERQKEYEDR----SQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQ 253 (269)
Q Consensus 185 n~~LK~ql~~-------l~~eN~iLKRAv~IQheR~~e~e~~----~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 253 (269)
|..||+||.. |..+|.-|+-+.-.-....+++..+ ..++..+|.-|.---+-+..|...+-.+.-||+|
T Consensus 162 N~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqq 241 (617)
T PF15070_consen 162 NRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQ 241 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4556666654 4567766666655444344443322 2223333332222223345555555555556665
Q ss_pred Hh
Q 024305 254 AE 255 (269)
Q Consensus 254 A~ 255 (269)
..
T Consensus 242 y~ 243 (617)
T PF15070_consen 242 YV 243 (617)
T ss_pred HH
Confidence 43
No 205
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=34.00 E-value=2e+02 Score=25.36 Aligned_cols=49 Identities=27% Similarity=0.373 Sum_probs=37.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024305 206 VSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQA 254 (269)
Q Consensus 206 v~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 254 (269)
|.|=-+=.+||+...+||.++|..+.++-+++-.||...-.-+..|...
T Consensus 19 f~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eV 67 (159)
T PF05384_consen 19 FEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEV 67 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443334567788888888888888888888888888888877777544
No 206
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=33.95 E-value=3.7e+02 Score=24.52 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 024305 138 VELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQE--------NMILKRAVSIQ 209 (269)
Q Consensus 138 VEl~V~EM~~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~e--------N~iLKRAv~IQ 209 (269)
++.+++||-.= |...=|.-|..-|...++-... +.. ..+..+.|+..|++.+...+.+ -..|.+|.
T Consensus 132 a~~mL~emr~r-~f~~~~~~Ae~El~~A~~LL~~-v~~-~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~--- 205 (264)
T PF06008_consen 132 AQRMLEEMRKR-DFTPQRQNAEDELKEAEDLLSR-VQK-WFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQ--- 205 (264)
T ss_pred HHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHH-HHH-HHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 56667777554 5777777777777776665433 332 1233455666665554333322 12222221
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024305 210 HERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAE 255 (269)
Q Consensus 210 heR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 255 (269)
.-.++.++.+...+ ..+..+++++..++..+.-.+.||..|.
T Consensus 206 -~~~~ea~~ln~~n~---~~l~~~~~k~~~l~~~~~~~~~~L~~a~ 247 (264)
T PF06008_consen 206 -NKTREAEDLNRANQ---KNLEDLEKKKQELSEQQNEVSETLKEAE 247 (264)
T ss_pred -HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233333333333 3566777888888888888888887774
No 207
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=33.90 E-value=3.8e+02 Score=24.65 Aligned_cols=77 Identities=23% Similarity=0.393 Sum_probs=40.2
Q ss_pred HHhhHHHhHHHHH-------HHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024305 178 AQSFHQENKMLKE-------QVEALIQENMILKRAV----SIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYA 246 (269)
Q Consensus 178 ~~~~~kEn~~LK~-------ql~~l~~eN~iLKRAv----~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYa 246 (269)
++.|+.||..|.. +...|..+|.-|++=| .+=..|-....++++....|++.|..|.-=...|-...-=
T Consensus 104 i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~ 183 (193)
T PF14662_consen 104 IETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSR 183 (193)
T ss_pred HHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655444 4444445555556555 1222344445566667777777777776544444333333
Q ss_pred HHHHHHHH
Q 024305 247 LTMHLKQA 254 (269)
Q Consensus 247 L~~HL~qA 254 (269)
|--+|.|.
T Consensus 184 LEeql~q~ 191 (193)
T PF14662_consen 184 LEEQLSQM 191 (193)
T ss_pred HHHHHHhh
Confidence 33344443
No 208
>PRK04195 replication factor C large subunit; Provisional
Probab=33.90 E-value=65 Score=31.95 Aligned_cols=50 Identities=26% Similarity=0.400 Sum_probs=37.6
Q ss_pred CCCCCCCCCCcchhHHHHHhhC----CCCCHHHHHHHHHHcCccHHHHHHHHHhhh
Q 024305 34 PVRFSPPRSSRSHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNELR 85 (269)
Q Consensus 34 p~r~~~~~~~~~~~l~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~ 85 (269)
.++|.++.. ..++..|..++ -.+++.+|+.+.+.||.||-.||..|..+.
T Consensus 154 ~I~f~~~~~--~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 154 MIEFKRLST--RSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred EEEecCCCH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 466776433 56666666654 247899999999999999999998886633
No 209
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=33.74 E-value=4.4e+02 Score=25.36 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=11.4
Q ss_pred HHHHHHHcCccHHHHHHHHHhhh
Q 024305 63 LDRALEECGDDLDSAIRSLNELR 85 (269)
Q Consensus 63 le~aLe~cgndlDaAIksL~~L~ 85 (269)
|++=|++-..+|+.|-+.|..++
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr 198 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQ 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555543
No 210
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=33.69 E-value=1.7e+02 Score=24.44 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024305 219 RSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQA 254 (269)
Q Consensus 219 ~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 254 (269)
...++..||+.+.+--|.=.+|+.-|--|+-+|.+.
T Consensus 20 l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 20 LLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666677777777777777777777777777654
No 211
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=33.39 E-value=1.9e+02 Score=20.91 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024305 219 RSQELHHLKQLVSQYQEQLRTLEVNNYALT 248 (269)
Q Consensus 219 ~~~El~~Lkql~~qyqEqir~LE~~NYaL~ 248 (269)
...++..|..-..++.+++..|+..+..|.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555554443
No 212
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=33.00 E-value=3.3e+02 Score=24.51 Aligned_cols=13 Identities=0% Similarity=0.286 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 024305 229 LVSQYQEQLRTLE 241 (269)
Q Consensus 229 l~~qyqEqir~LE 241 (269)
.+.++++.|...+
T Consensus 161 ~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 161 KLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
No 213
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=33.00 E-value=2.3e+02 Score=31.23 Aligned_cols=100 Identities=23% Similarity=0.345 Sum_probs=61.3
Q ss_pred HHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 137 WVELFVREMMS-SSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKE 215 (269)
Q Consensus 137 WVEl~V~EM~~-Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e 215 (269)
-|..|+.|+-. -++.+|- =.-|++--+|.+|.---+--..-++|-|++-- ++-|-.||.-|+|=++|-+++++|
T Consensus 338 t~KYLLgELkaLVaeq~Ds--E~qRLitEvE~cislLPav~g~tniq~EIALA---~QplrsENaqLrRrLrilnqqlre 412 (861)
T PF15254_consen 338 TLKYLLGELKALVAEQEDS--EVQRLITEVEACISLLPAVSGSTNIQVEIALA---MQPLRSENAQLRRRLRILNQQLRE 412 (861)
T ss_pred HHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHhhhhhhccccchhhhHhh---hhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34555666543 1222332 24577777777776643332334566666543 778889999999999999999999
Q ss_pred HHHH---------HHHHHHHHHHH----HHHHHHHHHHH
Q 024305 216 YEDR---------SQELHHLKQLV----SQYQEQLRTLE 241 (269)
Q Consensus 216 ~e~~---------~~El~~Lkql~----~qyqEqir~LE 241 (269)
.|.. +-||-.|+-|- .|.+|.++.+|
T Consensus 413 qe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e 451 (861)
T PF15254_consen 413 QEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQE 451 (861)
T ss_pred HHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 7732 34555555433 44555555554
No 214
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=32.95 E-value=3.8e+02 Score=27.75 Aligned_cols=91 Identities=21% Similarity=0.244 Sum_probs=62.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHH
Q 024305 148 SSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYE----DRSQEL 223 (269)
Q Consensus 148 Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e----~~~~El 223 (269)
-..+++|+.=..|+++.++| +.. +....+....-|..++.+...+.-....+|++|+.|+-....+.. ..-..+
T Consensus 296 ~GKf~EA~~~~e~Al~I~~~-~~~-~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl 373 (508)
T KOG1840|consen 296 QGKFAEAEEYCERALEIYEK-LLG-ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANL 373 (508)
T ss_pred cCChHHHHHHHHHHHHHHHH-hhc-cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 36788999999999999999 333 333334446667777888888888888899999988874443322 222456
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024305 224 HHLKQLVSQYQEQLRTL 240 (269)
Q Consensus 224 ~~Lkql~~qyqEqir~L 240 (269)
..|.+...+|+|-..-+
T Consensus 374 ~~l~~~~gk~~ea~~~~ 390 (508)
T KOG1840|consen 374 AELYLKMGKYKEAEELY 390 (508)
T ss_pred HHHHHHhcchhHHHHHH
Confidence 67777777777755433
No 215
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=32.85 E-value=15 Score=38.50 Aligned_cols=10 Identities=20% Similarity=0.262 Sum_probs=0.0
Q ss_pred ChHHHHHHHH
Q 024305 150 NIDDARARAS 159 (269)
Q Consensus 150 d~dDAraRAs 159 (269)
-.+|.|.++.
T Consensus 261 ~~~d~~~~~e 270 (713)
T PF05622_consen 261 QRDDLKIELE 270 (713)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3455555544
No 216
>PHA02047 phage lambda Rz1-like protein
Probab=32.83 E-value=1.9e+02 Score=24.11 Aligned_cols=32 Identities=31% Similarity=0.328 Sum_probs=21.1
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSIQHER 212 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR 212 (269)
-|+|.+-|+.||+.+...-.-+-+.|.--|.|
T Consensus 32 ~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 32 AHEEAKRQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888889999987765555555555444444
No 217
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=32.81 E-value=79 Score=27.51 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=0.0
Q ss_pred HHHHhhHHHhHHHHHHHHHHHHHHHHHHH
Q 024305 176 EAAQSFHQENKMLKEQVEALIQENMILKR 204 (269)
Q Consensus 176 e~~~~~~kEn~~LK~ql~~l~~eN~iLKR 204 (269)
...+.|.+++.+|..|++.|..||.-+.+
T Consensus 74 ~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 74 QQKHELEKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 218
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.71 E-value=1.3e+02 Score=30.90 Aligned_cols=59 Identities=31% Similarity=0.346 Sum_probs=41.2
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQA 254 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 254 (269)
+.+.+|+..|+.|. ++||.||-- +|.| +..|+.-+.||..-||+.|..|.+|.+.-.|-
T Consensus 18 qklaqeysklraqa-------kvlke~vie--e~gk--------~~kl~eelk~k~a~irrieaendsl~frndql 76 (637)
T KOG4421|consen 18 QKLAQEYSKLRAQA-------KVLKEAVIE--EQGK--------EAKLREELKQKAASIRRIEAENDSLGFRNDQL 76 (637)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHH--Hhcc--------hhHHHHHHHHHHHHHHHHHHhccccccchHHH
Confidence 45666666666555 788888842 3333 23455567789999999999999998765553
No 219
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=32.67 E-value=3.4e+02 Score=26.48 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=29.4
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 024305 178 AQSFHQENKMLKEQVEALIQENMILKRAVS-IQHER 212 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~-IQheR 212 (269)
.+.+.++|..||+|+..|-+|..-||.+|. .+|.|
T Consensus 257 ~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r 292 (294)
T KOG4571|consen 257 LEGLEKRNEELKDQASELEREIRYLKQLILEVYKKR 292 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456889999999999999999999999985 34444
No 220
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=32.54 E-value=3e+02 Score=26.12 Aligned_cols=81 Identities=27% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHH--hhHHHHHhhHHHh-HHH----HHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHH
Q 024305 163 EILEKSICAR--ASAEAAQSFHQEN-KML----KEQVEALIQENMILKRAVSIQHE------RQKEYEDRSQELHHLKQL 229 (269)
Q Consensus 163 EafEksi~~r--a~ae~~~~~~kEn-~~L----K~ql~~l~~eN~iLKRAv~IQhe------R~~e~e~~~~El~~Lkql 229 (269)
++||.|.++| ..++-.+-+-||. .+| |+.+-.--.+++|||=-++-+-+ +--|+.+..++.+.|+.-
T Consensus 3 ~t~~~StrerLL~~~dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~ 82 (272)
T KOG4552|consen 3 ETDERSTRERLLESADDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAH 82 (272)
T ss_pred ccccccHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhh
Q 024305 230 VSQYQEQLRTLEVN 243 (269)
Q Consensus 230 ~~qyqEqir~LE~~ 243 (269)
|..-.+-|..|+.+
T Consensus 83 VEkrD~~IQqLqk~ 96 (272)
T KOG4552|consen 83 VEKRDEVIQQLQKN 96 (272)
T ss_pred HHHhHHHHHHHHHH
No 221
>PF15463 ECM11: Extracellular mutant protein 11
Probab=32.45 E-value=1.8e+02 Score=24.54 Aligned_cols=60 Identities=22% Similarity=0.428 Sum_probs=40.1
Q ss_pred CcchHHHH---HHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHH
Q 024305 133 DGPEWVEL---FVREMM-SSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQ 197 (269)
Q Consensus 133 ~g~eWVEl---~V~EM~-~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~ 197 (269)
+=.+|.+. |+.+.. -..-|.++|.-=.++-+.||+.|..|+.+ +..+-..|.++|+.+..
T Consensus 70 s~~eWe~~Gd~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~ea-----v~~~~~~l~~kL~~mk~ 133 (139)
T PF15463_consen 70 SFDEWEEAGDWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEA-----VRAQGEQLDRKLEKMKE 133 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 33556542 344333 23457788888888899999999999887 55666666666666544
No 222
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=32.26 E-value=7.5e+02 Score=29.91 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=45.5
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024305 177 AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHL 251 (269)
Q Consensus 177 ~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL 251 (269)
-...+++++..|+..+..+..++.=|+....++-+|.+- |...++.|.+++.+|+..|--|.-++
T Consensus 655 ~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~----------L~~~ie~~K~e~~tL~er~~~l~~~i 719 (1822)
T KOG4674|consen 655 NLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLEN----------LEKNLELTKEEVETLEERNKNLQSTI 719 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888888888888888888888887777544 44456666666776666665554444
No 223
>PRK00846 hypothetical protein; Provisional
Probab=32.20 E-value=2.5e+02 Score=22.08 Aligned_cols=36 Identities=11% Similarity=-0.045 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcC
Q 024305 223 LHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEHSN 258 (269)
Q Consensus 223 l~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~ 258 (269)
+.+|.+.|.+.|.+|..|...--.|.-+|+.++.++
T Consensus 29 Ie~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 29 LTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 566777888888888888888888888998877544
No 224
>PRK04863 mukB cell division protein MukB; Provisional
Probab=32.14 E-value=9e+02 Score=28.48 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024305 219 RSQELHHLKQLVSQYQEQLRTLEVNNYALTMHL 251 (269)
Q Consensus 219 ~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL 251 (269)
...+++.|+.-+..|++.+..++..-+.+..-+
T Consensus 388 lEeeLeeLqeqLaelqqel~elQ~el~q~qq~i 420 (1486)
T PRK04863 388 AEEEVDELKSQLADYQQALDVQQTRAIQYQQAV 420 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555444444433
No 225
>PRK04406 hypothetical protein; Provisional
Probab=32.07 E-value=2.4e+02 Score=21.78 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 024305 222 ELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEH 256 (269)
Q Consensus 222 El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 256 (269)
-+.+|.+.|.+-|.+|..|+..--.|.-.|+.+..
T Consensus 26 tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 26 TIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35666777777788887777776666667766553
No 226
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=31.79 E-value=8.5e+02 Score=29.66 Aligned_cols=68 Identities=26% Similarity=0.332 Sum_probs=38.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHL 251 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL 251 (269)
+..||+.|+..+..|...+.=+-+.| |+..+.......|+.+|+..+..++..++..|...+.+.+-+
T Consensus 1489 l~renk~l~~ei~dl~~~~~e~~k~v---~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~ 1556 (1930)
T KOG0161|consen 1489 LRRENKNLSQEIEDLEEQKDEGGKRV---HELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLEL 1556 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 44555555555555554444444333 444444444556666666677777776666666666654444
No 227
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=31.76 E-value=39 Score=32.70 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=23.9
Q ss_pred HHHHHHHcCccHHHHHHHHHhhhcccccC
Q 024305 63 LDRALEECGDDLDSAIRSLNELRLGSADN 91 (269)
Q Consensus 63 le~aLe~cgndlDaAIksL~~L~L~sa~~ 91 (269)
-.+||++++.|||.||+-|..--+..+..
T Consensus 23 CKkAL~E~~Gd~EkAie~LR~kG~akA~K 51 (296)
T COG0264 23 CKKALEEANGDIEKAIEWLREKGIAKAAK 51 (296)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhchHhhhh
Confidence 57999999999999999999865555443
No 228
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=31.74 E-value=2.2e+02 Score=30.79 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024305 184 ENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALT 248 (269)
Q Consensus 184 En~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~ 248 (269)
|..-||+||..+-+|+..|-..+ ++.+..+.+-+..+...+++|..|-.+.-||.
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L----------~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~ 320 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNL----------QESQKQLEHAQGALSEQQEKINRLTEQLDALR 320 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 229
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=31.49 E-value=4.3e+02 Score=28.63 Aligned_cols=73 Identities=25% Similarity=0.240 Sum_probs=48.7
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024305 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQK-EYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQA 254 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~-e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 254 (269)
++||-+||..|-+.-.+| +|.|+-+--|-.-+. |.+...-|+...||.-...|||||.||..--.++--+--|
T Consensus 303 VeNLilENsqLLetKNAL----NiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 303 VENLILENSQLLETKNAL----NIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHhhHHHHhhhhHH----HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665553332222 455555544544444 6777778999999999999999999999876666555444
No 230
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=31.41 E-value=2.4e+02 Score=21.69 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=18.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 214 KEYEDRSQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 214 ~e~e~~~~El~~Lkql~~qyqEqir~LE~ 242 (269)
.|+|...+.+..+++-+..-+.+|..||.
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46666666666666666666666666664
No 231
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.39 E-value=1.7e+02 Score=30.42 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=47.7
Q ss_pred HHhhHHHhHHHHHHHHHH--HHHHHH------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024305 178 AQSFHQENKMLKEQVEAL--IQENMI------------LKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVN 243 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l--~~eN~i------------LKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~ 243 (269)
+..+|||...+.+++.+- ..+--+ -.+-++-=|.=-.+.-++..+--.+++-|..|++||-.-|..
T Consensus 412 treLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k 491 (521)
T KOG1937|consen 412 TRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQK 491 (521)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHH
Confidence 456777777777776642 111111 122344456666666677777778888888888888888888
Q ss_pred hHHHHHHHH
Q 024305 244 NYALTMHLK 252 (269)
Q Consensus 244 NYaL~~HL~ 252 (269)
||-.++-+-
T Consensus 492 ~~l~slEkl 500 (521)
T KOG1937|consen 492 QYLKSLEKL 500 (521)
T ss_pred HHHhhHHHH
Confidence 887666543
No 232
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=31.36 E-value=4.1e+02 Score=25.42 Aligned_cols=127 Identities=19% Similarity=0.237 Sum_probs=59.1
Q ss_pred chHHHHHHHHHhcCCChHHHHHHHHHH---HHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 135 PEWVELFVREMMSSSNIDDARARASRA---LEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHE 211 (269)
Q Consensus 135 ~eWVEl~V~EM~~Asd~dDAraRAsRv---LEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQhe 211 (269)
-.||-.+++=--.-..+.=-|.+...+ |+..++-... .......+..+...|+.+.+...+|..-|+.-+.+-..
T Consensus 200 c~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~--~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 277 (344)
T PF12777_consen 200 CKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAE--KQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETER 277 (344)
T ss_dssp HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 479888765333334443333333332 3332222221 11123335555566666666666666655555444444
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCCCCC
Q 024305 212 RQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEHSNSIPGRFHP 266 (269)
Q Consensus 212 R~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g~~~P 266 (269)
|+.--.. =+..|..--..+++++..|+.....|--..=-|-..-+..|.|++
T Consensus 278 kl~rA~~---Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~llaaa~isY~G~f~~ 329 (344)
T PF12777_consen 278 KLERAEK---LISGLSGEKERWSEQIEELEEQLKNLVGDSLLAAAFISYLGPFTP 329 (344)
T ss_dssp HHHHHHH---HHHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCTSH
T ss_pred hhccHHH---HHhhhcchhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCCCH
Confidence 4333221 122222233345566666666555554443344433355666654
No 233
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=31.22 E-value=2.5e+02 Score=25.08 Aligned_cols=17 Identities=6% Similarity=0.075 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024305 223 LHHLKQLVSQYQEQLRT 239 (269)
Q Consensus 223 l~~Lkql~~qyqEqir~ 239 (269)
+..++..+...+.++..
T Consensus 111 ~~~~~~~l~~~~~~l~~ 127 (322)
T TIGR01730 111 VEAAQADLEAAKASLAS 127 (322)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 234
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=31.04 E-value=3.1e+02 Score=28.16 Aligned_cols=67 Identities=27% Similarity=0.291 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024305 187 MLKEQVEALIQENMILKRAVSIQHERQK--EYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQ 253 (269)
Q Consensus 187 ~LK~ql~~l~~eN~iLKRAv~IQheR~~--e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 253 (269)
.|+++++.+.+|+..-|+-+.|--+-.+ ++++...|+++|+.-=.+--.|++.||.++|-|---|+.
T Consensus 147 ~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e 215 (447)
T KOG2751|consen 147 KLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKE 215 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888887777555444 456677777777766666667788888888877766543
No 235
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.02 E-value=2.8e+02 Score=29.01 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=30.8
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
...|+.|..+ +.+.-.-+.|||.-||++|-|++.|..
T Consensus 430 ~~~la~Lv~m--GF~e~~A~~ALe~~gnn~~~a~~~L~~ 466 (568)
T KOG2561|consen 430 GISLAELVSM--GFEEGKARSALEAGGNNEDTAQRLLSA 466 (568)
T ss_pred hhhHHHHHHh--ccccchHHHHHHhcCCcHHHHHHHHHH
Confidence 3457777765 677778899999999999999999976
No 236
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=30.89 E-value=3e+02 Score=25.42 Aligned_cols=56 Identities=23% Similarity=0.370 Sum_probs=26.3
Q ss_pred hHHHHHHHHH---HHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 024305 151 IDDARARASR---ALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVS 207 (269)
Q Consensus 151 ~dDAraRAsR---vLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~ 207 (269)
+||.|..+-+ =-+-|-.-...-..- .+...++....|....+.|++||..||....
T Consensus 81 LDddRqKgrklarEWQrFGryta~vmr~-eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl 139 (195)
T PF10226_consen 81 LDDDRQKGRKLAREWQRFGRYTASVMRQ-EVAQYQQKLKELEDKQEELIRENLELKELCL 139 (195)
T ss_pred cchhHHHhHHHhHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5777776544 344554443332222 1222444444444445555555555554443
No 237
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=30.81 E-value=3.4e+02 Score=23.13 Aligned_cols=65 Identities=15% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 176 EAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTL 240 (269)
Q Consensus 176 e~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~L 240 (269)
..+..|++-|..|..+++.+...-.-+|..+..=+.+....+..++.++.|-.=+.+....++..
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~ 99 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKET 99 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHH
No 238
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=30.72 E-value=8.1e+02 Score=27.49 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=16.6
Q ss_pred HHHHHHHHHc--CccHHHHHHHHHhh
Q 024305 61 QILDRALEEC--GDDLDSAIRSLNEL 84 (269)
Q Consensus 61 q~le~aLe~c--gndlDaAIksL~~L 84 (269)
.++..+|... -+||+.|.+-...+
T Consensus 607 ~~~~~~l~~t~Iv~~l~~A~~l~~~~ 632 (1163)
T COG1196 607 PAVRFVLGDTLVVDDLEQARRLARKL 632 (1163)
T ss_pred HHHHHHhCCeEEecCHHHHHHHHHhc
Confidence 4455555543 36899999988887
No 239
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=30.56 E-value=2.9e+02 Score=22.25 Aligned_cols=35 Identities=29% Similarity=0.513 Sum_probs=19.0
Q ss_pred HhhHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhHH
Q 024305 179 QSFHQENKMLKEQVE------ALIQENMILKRAVSIQHERQKEYE 217 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~------~l~~eN~iLKRAv~IQheR~~e~e 217 (269)
..+.+|+..|++|++ +...||.-|+- |..|.+.+.
T Consensus 27 ~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~e----e~rrl~~f~ 67 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNPEVTRFAMENIRLRE----ELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 446667777776554 34455555543 444544444
No 240
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=30.55 E-value=94 Score=24.21 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHhhcC
Q 024305 222 ELHHLKQLVSQYQEQLRTLEVNNYALT-MHLKQAEHSN 258 (269)
Q Consensus 222 El~~Lkql~~qyqEqir~LE~~NYaL~-~HL~qA~~~~ 258 (269)
+|.+|-+--.+-++++.+||...|.+- -+|......+
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~~~~~~G 40 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDKETSYLEDTSPYG 40 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCC
Confidence 444444555566677888888888874 4555344333
No 241
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=30.44 E-value=60 Score=27.11 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=20.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRA 205 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRA 205 (269)
...|...||.+...|..||+.||==
T Consensus 70 ~~~e~~rlkkk~~~LeEENNlLklK 94 (108)
T cd07429 70 SGREVLRLKKKNQQLEEENNLLKLK 94 (108)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888999999999999843
No 242
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=30.38 E-value=1e+02 Score=24.45 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=27.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 024305 208 IQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEH 256 (269)
Q Consensus 208 IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 256 (269)
=+..|+++++.+-.|... .++=.=||.+-.+.--|..-|+....
T Consensus 19 e~Q~rlK~Le~qk~E~EN-----~EIv~~VR~~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 19 ELQARLKELEAQKTEAEN-----LEIVQMVRSMKMTPEELAAFLRAMKS 62 (83)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 344466666665544444 23334567777777788888877653
No 243
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=30.35 E-value=4.3e+02 Score=24.35 Aligned_cols=71 Identities=25% Similarity=0.160 Sum_probs=52.7
Q ss_pred HhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024305 184 ENKMLKEQVEALIQENMIL----KRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQA 254 (269)
Q Consensus 184 En~~LK~ql~~l~~eN~iL----KRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 254 (269)
|+..||.++..+-.+.... ...-...+.+..+.+....|++..+.-...-+++|-.||..+-.|+--+..+
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 6667777765554433322 2223345677788899999999999999999999999999999888877665
No 244
>PRK04863 mukB cell division protein MukB; Provisional
Probab=30.08 E-value=9.7e+02 Score=28.22 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=16.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 024305 184 ENKMLKEQVEALIQENMILKRAVSIQHERQKEYED 218 (269)
Q Consensus 184 En~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~ 218 (269)
|...+++++..+..+..-+..++..+..+...|+.
T Consensus 384 EleelEeeLeeLqeqLaelqqel~elQ~el~q~qq 418 (1486)
T PRK04863 384 RAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQ 418 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445555555555555443
No 245
>PRK04325 hypothetical protein; Provisional
Probab=29.90 E-value=2.6e+02 Score=21.45 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024305 222 ELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAE 255 (269)
Q Consensus 222 El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 255 (269)
-+.+|...|.+-|.+|.+|+..-=.|.-.|+...
T Consensus 24 tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 24 LIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3667777888888888888877667766776655
No 246
>PRK02793 phi X174 lysis protein; Provisional
Probab=29.76 E-value=2.5e+02 Score=21.36 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 024305 222 ELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEHS 257 (269)
Q Consensus 222 El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~ 257 (269)
-+..|...|.+-|.+|.+|+..-=.|.-.|+....+
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 366677788888888888887766676677665543
No 247
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=29.74 E-value=4.1e+02 Score=23.71 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=11.8
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVS 207 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~ 207 (269)
..+++...|+.+..+..++.-.+..+.
T Consensus 82 ~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 82 LRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 248
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.71 E-value=9.5e+02 Score=28.00 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=21.9
Q ss_pred HHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024305 201 ILKRAVSI--QHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAE 255 (269)
Q Consensus 201 iLKRAv~I--QheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 255 (269)
++|+.+-+ +.++++..++..+|+.++..--+. .++|.+|....-.+.+++-|.+
T Consensus 850 ~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~q 905 (1293)
T KOG0996|consen 850 VLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQ 905 (1293)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHh
Confidence 55555432 222233344444555555111111 2344444444444444444443
No 249
>PRK09458 pspB phage shock protein B; Provisional
Probab=29.55 E-value=1e+02 Score=24.31 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024305 220 SQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 220 ~~El~~Lkql~~qyqEqir~LE~ 242 (269)
.+.|++|-.....-+|+|.|||.
T Consensus 41 ~~~L~~L~~~A~rm~~RI~tLE~ 63 (75)
T PRK09458 41 QQRLAQLTEKAERMRERIQALEA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788889999999995
No 250
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.44 E-value=1.8e+02 Score=27.23 Aligned_cols=49 Identities=20% Similarity=0.362 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024305 204 RAVSIQHERQKE-YEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLK 252 (269)
Q Consensus 204 RAv~IQheR~~e-~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 252 (269)
-.|.-|-.|.+. ..+...|+.++++.+...+.+|.+|...|--|---.|
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666552 3345567888888888888888888888866644333
No 251
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.39 E-value=7e+02 Score=26.35 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=40.5
Q ss_pred CCCCCCCCCCcchhHHHHHhhCC----CCCHHHHHHHHHHcCccHHHHHHHHHhhhcc
Q 024305 34 PVRFSPPRSSRSHLLDQLAAIFP----DMDNQILDRALEECGDDLDSAIRSLNELRLG 87 (269)
Q Consensus 34 p~r~~~~~~~~~~~l~~L~~lFP----~md~q~le~aLe~cgndlDaAIksL~~L~L~ 87 (269)
.++|.++.. ..+...|..+|- .++++.++.+.+.||.|+..|+.-|..|.+-
T Consensus 180 ~vef~~l~~--~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y 235 (620)
T PRK14954 180 RFNFKRIPL--DEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAF 235 (620)
T ss_pred EEecCCCCH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 456666322 566677877764 4899999999999999999999999887643
No 252
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=29.17 E-value=5.4e+02 Score=25.00 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 219 RSQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 219 ~~~El~~Lkql~~qyqEqir~LE~ 242 (269)
..+++..+.+-+..-+.++.+|+.
T Consensus 98 l~~~l~~~~~~l~~l~~~~~~l~~ 121 (372)
T PF04375_consen 98 LQQELAQLQQQLAELQQQLAALSQ 121 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555666666667766654
No 253
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=28.88 E-value=5.6e+02 Score=25.09 Aligned_cols=44 Identities=11% Similarity=0.254 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcC
Q 024305 215 EYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEHSN 258 (269)
Q Consensus 215 e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~ 258 (269)
|+..+...|.-|..-+.-.-.||.+||+..--+.-+|..+++..
T Consensus 89 dlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 89 DLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566677777777788888899999999999999998888644
No 254
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=28.76 E-value=4.2e+02 Score=23.63 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 024305 223 LHHLKQLVSQYQEQLR 238 (269)
Q Consensus 223 l~~Lkql~~qyqEqir 238 (269)
+..++.-+...+.++.
T Consensus 104 ~~~~~~~~~~~~~~l~ 119 (322)
T TIGR01730 104 LDDAKAAVEAAQADLE 119 (322)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 255
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=28.59 E-value=4.1e+02 Score=23.70 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=19.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAV 206 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv 206 (269)
|.+-|.||++|++.....|.-|..=+
T Consensus 79 L~qvN~lLReQLEq~~~~N~~L~~dl 104 (182)
T PF15035_consen 79 LAQVNALLREQLEQARKANEALQEDL 104 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677888888888888887776533
No 256
>PRK02119 hypothetical protein; Provisional
Probab=28.54 E-value=2.7e+02 Score=21.30 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 024305 222 ELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEHS 257 (269)
Q Consensus 222 El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~ 257 (269)
-+.+|...|.+=|.+|..|+..--.|.-+|+....+
T Consensus 24 tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 24 LLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 366677777788888888887777777777665533
No 257
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=28.53 E-value=1.8e+02 Score=30.54 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 219 RSQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 219 ~~~El~~Lkql~~qyqEqir~LE~ 242 (269)
..+|+.+|+.-|..-..++++|..
T Consensus 604 ~~~e~~~l~~~~~~~ekr~~RLke 627 (722)
T PF05557_consen 604 QEKEIAELKAELASAEKRNQRLKE 627 (722)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666654
No 258
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=28.53 E-value=5.4e+02 Score=29.32 Aligned_cols=67 Identities=19% Similarity=0.152 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 024305 188 LKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEH 256 (269)
Q Consensus 188 LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 256 (269)
++.+++.+..+-..|+.++.-| |+++-|...++.+.+.+-......-|+.+-..|..|+--|.+.++
T Consensus 213 ~~~~~~~l~~~~~~Lq~~in~k--R~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~ 279 (1109)
T PRK10929 213 AKKRSQQLDAYLQALRNQLNSQ--RQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQ 279 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554443 333333333333332122222333344444556667666665554
No 259
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=28.53 E-value=5.8e+02 Score=25.09 Aligned_cols=49 Identities=20% Similarity=0.418 Sum_probs=29.3
Q ss_pred hHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQ-----ENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQ 236 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~-----eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEq 236 (269)
+..|+..+..|++.++. |..+++|-+.+-|+.... +.+|++++...++.
T Consensus 156 L~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~K-------IR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 156 LESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAK-------IRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHhhcc
Confidence 44455556666666654 556788888887776544 44455555554443
No 260
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=28.49 E-value=9.4e+02 Score=27.55 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=50.7
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHH------HH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024305 177 AAQSFHQENKMLKEQVEALIQENM------IL--KRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALT 248 (269)
Q Consensus 177 ~~~~~~kEn~~LK~ql~~l~~eN~------iL--KRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~ 248 (269)
....++++.+.+++.+..+-.=-. .| |=|.+-=.+..++|.+...+....++.++.|++.|+....++-.++
T Consensus 236 ~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r 315 (1074)
T KOG0250|consen 236 EIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEAR 315 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456665555555543222111 12 2345555678888888888999999999999999999999988877
Q ss_pred HHH
Q 024305 249 MHL 251 (269)
Q Consensus 249 ~HL 251 (269)
--|
T Consensus 316 ~k~ 318 (1074)
T KOG0250|consen 316 QKL 318 (1074)
T ss_pred hhh
Confidence 433
No 261
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.45 E-value=1.4e+02 Score=23.20 Aligned_cols=54 Identities=20% Similarity=0.388 Sum_probs=27.2
Q ss_pred hHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEA---LIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQL 237 (269)
Q Consensus 181 ~~kEn~~LK~ql~~---l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqi 237 (269)
+..+--.||-++.. ++++..=+-|-+.-|....++++ +++...++++..|.+++
T Consensus 26 ~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le---~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 26 LDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELE---EQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 44444445544432 23333335555555555544433 34556666777776654
No 262
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.34 E-value=2.8e+02 Score=24.85 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=14.7
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILK 203 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLK 203 (269)
+.++.|+..|+++++.|..||.-|+
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666655543
No 263
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=28.29 E-value=1.1e+02 Score=31.74 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=40.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------H----HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 183 QENKMLKEQVEALIQENMILKRAVSIQHERQKE----------------Y----EDRSQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 183 kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e----------------~----e~~~~El~~Lkql~~qyqEqir~LE~ 242 (269)
.+++.|+.||..|.++-+-|+..++-|+.---- . .--+.+++++||-++-.+=++.+||.
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lKv~~l~d 104 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLKVESLED 104 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhhHHHHhh
Confidence 456677777777777778888888777652200 0 00145788888888887777777775
Q ss_pred h
Q 024305 243 N 243 (269)
Q Consensus 243 ~ 243 (269)
.
T Consensus 105 a 105 (514)
T PF11336_consen 105 A 105 (514)
T ss_pred H
Confidence 3
No 264
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=27.95 E-value=3.2e+02 Score=21.97 Aligned_cols=88 Identities=11% Similarity=0.194 Sum_probs=62.2
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 024305 143 REMMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQE 222 (269)
Q Consensus 143 ~EM~~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E 222 (269)
+..+.|+|+++.+.-..++-.+.+.|-... +........|....++-+..|+.+-..++.+|. .-++++..+.
T Consensus 15 k~~~~a~~~~e~~~~l~~m~~~a~~ak~~~--P~~~~~d~~~~~~Y~~Gl~~li~~id~a~~~~~-----~G~l~~AK~~ 87 (103)
T PF07361_consen 15 KQAAKADDAAEMKTALDKMRAAAEDAKQGK--PPKLEGDSAEVKDYQEGLDKLIDQIDKAEALAE-----AGKLDEAKAA 87 (103)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHHHHTTTS---GGGTTTSHHHHHHHHHHHHHHHHHHHHHHHHH-----TTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhhcC--CccccccchHHHHHHHHHHHHHHHHHHHHHHHH-----CCCHHHHHHH
Confidence 445689999999988777777766665543 322222344667788888899988888887664 3456677788
Q ss_pred HHHHHHHHHHHHHHH
Q 024305 223 LHHLKQLVSQYQEQL 237 (269)
Q Consensus 223 l~~Lkql~~qyqEqi 237 (269)
++.|..+-.+|-..-
T Consensus 88 l~~l~~lR~eyHkk~ 102 (103)
T PF07361_consen 88 LKKLDDLRKEYHKKF 102 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhc
Confidence 888888888886543
No 265
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=27.92 E-value=81 Score=30.47 Aligned_cols=55 Identities=24% Similarity=0.395 Sum_probs=40.8
Q ss_pred ccccccCCCCCCCCCCCCCCcchhHHHHHhhCCC--CCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 24 SKRIRCSSSSPVRFSPPRSSRSHLLDQLAAIFPD--MDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 24 sKR~Rcssssp~r~~~~~~~~~~~l~~L~~lFP~--md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
+=|.||. .++|.|+.. +.+.+.|....+. +|+..+..+++.+|.+.-.||.-|..
T Consensus 187 tIrSRc~---~i~l~pl~~--~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 187 TIRSRCQ---PISLKPLDD--DELKKALSHLGSSQGSDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred HHHhhcc---EEEecCCCH--HHHHHHHHHhhcccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4577884 566777422 6677777765544 56999999999999999999987754
No 266
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=27.88 E-value=4.8e+02 Score=23.98 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 218 DRSQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 218 ~~~~El~~Lkql~~qyqEqir~LE~ 242 (269)
-...|+..||..+..-+|+-+.|=.
T Consensus 64 ~l~eEledLk~~~~~lEE~~~~L~a 88 (193)
T PF14662_consen 64 ALEEELEDLKTLAKSLEEENRSLLA 88 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777766665555444433
No 267
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=27.88 E-value=2.9e+02 Score=30.04 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024305 190 EQVEALIQENMILKRAV 206 (269)
Q Consensus 190 ~ql~~l~~eN~iLKRAv 206 (269)
..|++|-+||..||+-+
T Consensus 251 reLErlEKENkeLr~ll 267 (980)
T KOG0447|consen 251 RILERLEKENKELRKLV 267 (980)
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33566666666666443
No 268
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=27.86 E-value=3.8e+02 Score=24.27 Aligned_cols=52 Identities=27% Similarity=0.298 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHH---HHHHHHHHH
Q 024305 153 DARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQEN---MILKRAVSI 208 (269)
Q Consensus 153 DAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN---~iLKRAv~I 208 (269)
-+..+|-.+|++|-+.|...-.. ..+.+. ..|+.....|.+-. ..+.+++..
T Consensus 4 Gs~~~ai~al~~L~~~i~~~~~~-~~~el~---~~L~~~~~~L~~arP~~~~l~n~v~~ 58 (282)
T PF01008_consen 4 GSPAIAIAALEALRQVISDSKAT-TVQELI---EELRKAAKRLIKARPTSVSLGNAVRR 58 (282)
T ss_dssp SHHHHHHHHHHHHHHHHHHCHCS-SHHHHH---HHHHHHHHHHHTSSTS-HHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhcCCC-CHHHHH---HHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 36789999999999988875422 233343 34555555554422 244555443
No 269
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=27.67 E-value=1.3e+02 Score=27.68 Aligned_cols=70 Identities=17% Similarity=0.327 Sum_probs=31.4
Q ss_pred hHHHHHhhHHHh---HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 024305 174 SAEAAQSFHQEN---KMLKEQVEALIQENMILKRAVSIQH---ERQKEYED-RSQELHHLKQLVSQYQEQLRTLEVN 243 (269)
Q Consensus 174 ~ae~~~~~~kEn---~~LK~ql~~l~~eN~iLKRAv~IQh---eR~~e~e~-~~~El~~Lkql~~qyqEqir~LE~~ 243 (269)
..++..+||+|| ....+-|+-|...-.|--+-..-|- -+|..++. -..|++.|+--+.-|+|+++.|.+.
T Consensus 25 sq~v~~~lq~e~lgktavqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t 101 (201)
T KOG4603|consen 25 SQDVFGNLQREHLGKTAVQKTLDQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDEELQVLDGKIVALTEKVQSLQQT 101 (201)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHcCchhHHhccceeeEeecHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344455555555 3344445555554444433333221 12222221 1245555555555555555555443
No 270
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=27.64 E-value=3.6e+02 Score=25.29 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 024305 219 RSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEH 256 (269)
Q Consensus 219 ~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 256 (269)
+.+.+..|..--..+..+|.+|+..++.|+-.+.+...
T Consensus 220 ~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~ 257 (269)
T KOG3119|consen 220 MAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344444445555556666777777777777766543
No 271
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=27.62 E-value=3.5e+02 Score=22.34 Aligned_cols=21 Identities=33% Similarity=0.435 Sum_probs=10.8
Q ss_pred HhhHHHhHHHHHHHHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQEN 199 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN 199 (269)
+.++.+..+|..+...|.+.|
T Consensus 30 ~~~~~~~~~l~~~n~~lAe~n 50 (150)
T PF07200_consen 30 QELQQEREELLAENEELAEQN 50 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334555555555555555544
No 272
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=27.60 E-value=6.8e+02 Score=25.65 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=15.9
Q ss_pred HHHhhhHHHHHHHHHHhhcCCCCCCC
Q 024305 239 TLEVNNYALTMHLKQAEHSNSIPGRF 264 (269)
Q Consensus 239 ~LE~~NYaL~~HL~qA~~~~~~~g~~ 264 (269)
.+.++|-||.--. .|.....+|+++
T Consensus 378 q~~v~~saLdtCi-kaKsq~~~p~~r 402 (442)
T PF06637_consen 378 QLAVKTSALDTCI-KAKSQPMTPGPR 402 (442)
T ss_pred HHHhhhhHHHHHH-HhccCCCCCCCC
Confidence 3567888888877 455555556643
No 273
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=27.49 E-value=5.7e+02 Score=24.71 Aligned_cols=84 Identities=19% Similarity=0.318 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHH-HHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024305 155 RARASRALEILEKSICARASAE-AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQY 233 (269)
Q Consensus 155 raRAsRvLEafEksi~~ra~ae-~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qy 233 (269)
|..=.-|=|-|-|++...|-=+ ...++.-+...||..|+.+.....-|+|=+. +..++++-..+....|+--++..
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~---eK~~elEr~K~~~d~L~~e~~~L 159 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR---EKIRELERQKRAHDSLREELDEL 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777788889988866522 2334555667777777777777776666552 23333333333344444455555
Q ss_pred HHHHHHHH
Q 024305 234 QEQLRTLE 241 (269)
Q Consensus 234 qEqir~LE 241 (269)
+++|+..+
T Consensus 160 re~L~~rd 167 (302)
T PF09738_consen 160 REQLKQRD 167 (302)
T ss_pred HHHHHHHH
Confidence 66665543
No 274
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=27.41 E-value=2.8e+02 Score=21.09 Aligned_cols=42 Identities=24% Similarity=0.395 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHH
Q 024305 187 MLKEQVEALIQENMILKRAVSIQH-ERQKEYEDRSQELHHLKQLV 230 (269)
Q Consensus 187 ~LK~ql~~l~~eN~iLKRAv~IQh-eR~~e~e~~~~El~~Lkql~ 230 (269)
.|++|+..+.+-+.-| .+-+|| ||.+-.+.--.||+.+.+-+
T Consensus 5 ~L~~QLd~I~~~K~~l--~ik~~H~Ekl~kitK~p~El~~i~~kl 47 (62)
T PF06034_consen 5 SLTQQLDEINQMKRQL--TIKSQHWEKLKKITKNPKELQEIEKKL 47 (62)
T ss_pred cHHHHHHHHHHHHHHH--HHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4777777766554432 356677 88877665556666654433
No 275
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=27.40 E-value=6e+02 Score=24.89 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=35.5
Q ss_pred HHHHHHHH--HhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 024305 164 ILEKSICA--RASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYE 217 (269)
Q Consensus 164 afEksi~~--ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e 217 (269)
-+||+|.. |+.+- |....+|||+++..-++. +|++|+--|..+.|-|
T Consensus 154 nIEKSvKDLqRctvS----L~RYr~~lkee~d~S~k~---ik~~F~~l~~cL~dRE 202 (302)
T PF07139_consen 154 NIEKSVKDLQRCTVS----LTRYRVVLKEEMDSSIKK---IKQTFAELQSCLMDRE 202 (302)
T ss_pred cHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 46888865 66652 788899999999877754 6888888777777755
No 276
>PHA03162 hypothetical protein; Provisional
Probab=27.40 E-value=98 Score=26.97 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCC
Q 024305 230 VSQYQEQLRTLEVNNYALTMHLKQAEHSNSIPGR 263 (269)
Q Consensus 230 ~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g~ 263 (269)
+++.+.+|-+|+..|-+|.--|++......|||-
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d 48 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGD 48 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Confidence 4566778888999999999999888776666664
No 277
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=27.39 E-value=65 Score=29.13 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCccHHHHHHHHHhhh
Q 024305 61 QILDRALEECGDDLDSAIRSLNELR 85 (269)
Q Consensus 61 q~le~aLe~cgndlDaAIksL~~L~ 85 (269)
+-|.++|++||.+|.+..++||-.|
T Consensus 145 EhIqrvl~e~~~NiSeTARrL~MHR 169 (182)
T COG4567 145 EHIQRVLEECEGNISETARRLNMHR 169 (182)
T ss_pred HHHHHHHHHhCCCHHHHHHHhhhhH
Confidence 4589999999999999999998754
No 278
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=27.22 E-value=2.9e+02 Score=21.28 Aligned_cols=54 Identities=19% Similarity=0.122 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHH
Q 024305 200 MILKRAVSIQHERQKEY-EDRSQELHHLKQLVSQYQEQLRTLEVNN-YALTMHLKQ 253 (269)
Q Consensus 200 ~iLKRAv~IQheR~~e~-e~~~~El~~Lkql~~qyqEqir~LE~~N-YaL~~HL~q 253 (269)
..++-.+.+........ .+...-+..|.+.+.+....++.+=.-| |+|.+=..|
T Consensus 54 ~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~~~~~l~~l~~~n~~~L~~l~~q 109 (110)
T PF04003_consen 54 RWLKALLKTHGSYLSSSSPELRPVLRSLQKILRERLQNLSKLLDLNLGRLDYLLSQ 109 (110)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 46666666666666777 7788889999999999888888888888 999987654
No 279
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=27.15 E-value=4.4e+02 Score=24.45 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhh
Q 024305 163 EILEKSICARAS 174 (269)
Q Consensus 163 EafEksi~~ra~ 174 (269)
..+|..+..+..
T Consensus 43 ~~le~~~~~~~~ 54 (263)
T PRK10803 43 TQLERISNAHSQ 54 (263)
T ss_pred HHHHHHHHhhhH
Confidence 344444444443
No 280
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=27.14 E-value=8.2e+02 Score=26.44 Aligned_cols=6 Identities=17% Similarity=0.086 Sum_probs=2.3
Q ss_pred HHHHHH
Q 024305 157 RASRAL 162 (269)
Q Consensus 157 RAsRvL 162 (269)
||..++
T Consensus 501 ~A~~~~ 506 (771)
T TIGR01069 501 QAKTFY 506 (771)
T ss_pred HHHHHH
Confidence 333333
No 281
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=26.92 E-value=1.2e+02 Score=23.62 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024305 220 SQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 220 ~~El~~Lkql~~qyqEqir~LE~ 242 (269)
.+.+++|-+....-+|+|.+||.
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 41 QALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677778888888885
No 282
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=26.77 E-value=4.4e+02 Score=23.14 Aligned_cols=21 Identities=19% Similarity=0.446 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024305 221 QELHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 221 ~El~~Lkql~~qyqEqir~LE 241 (269)
..+..|+.-+.+...+|..++
T Consensus 112 ~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 112 AQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 283
>PRK04132 replication factor C small subunit; Provisional
Probab=26.71 E-value=69 Score=35.02 Aligned_cols=58 Identities=24% Similarity=0.344 Sum_probs=43.5
Q ss_pred ccccccCCCCCCCCCCCCCCcchhHHHHHhhCC----CCCHHHHHHHHHHcCccHHHHHHHHHhhhc
Q 024305 24 SKRIRCSSSSPVRFSPPRSSRSHLLDQLAAIFP----DMDNQILDRALEECGDDLDSAIRSLNELRL 86 (269)
Q Consensus 24 sKR~Rcssssp~r~~~~~~~~~~~l~~L~~lFP----~md~q~le~aLe~cgndlDaAIksL~~L~L 86 (269)
+=|+||- .++|.++. ...++..|..+.. .++++.+..+...|+.|+-.||..|..+..
T Consensus 676 tIrSRC~---~i~F~~ls--~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~ 737 (846)
T PRK04132 676 PIQSRCA---IFRFRPLR--DEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAA 737 (846)
T ss_pred HHhhhce---EEeCCCCC--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3467884 56777742 2567777776543 368999999999999999999999877543
No 284
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=26.58 E-value=96 Score=29.65 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=38.3
Q ss_pred ccccccCCCCCCCCCCCCCCcchhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHH
Q 024305 24 SKRIRCSSSSPVRFSPPRSSRSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSL 81 (269)
Q Consensus 24 sKR~Rcssssp~r~~~~~~~~~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 81 (269)
+=|+||- .++|.++. .+..+..|...+|..+++-+..++.-++.....|++-+
T Consensus 152 TI~SRc~---~~~~~~~~--~~~~~~~L~~~~~~~~~~~~~~~l~la~Gsp~~A~~l~ 204 (328)
T PRK05707 152 TIKSRCQ---QQACPLPS--NEESLQWLQQALPESDERERIELLTLAGGSPLRALQLH 204 (328)
T ss_pred HHHhhce---eeeCCCcC--HHHHHHHHHHhcccCChHHHHHHHHHcCCCHHHHHHHH
Confidence 5688995 56676642 25667788887887777777777888888888777654
No 285
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=26.51 E-value=2.6e+02 Score=22.67 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024305 221 QELHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 221 ~El~~Lkql~~qyqEqir~LE 241 (269)
+|++.|++--.+-+++|..|.
T Consensus 41 ~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 41 QTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333334444443
No 286
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=26.32 E-value=3.7e+02 Score=22.18 Aligned_cols=77 Identities=14% Similarity=0.231 Sum_probs=56.5
Q ss_pred HHHHHHHhc--------CCChHHHHHHHHHHHHHHHHHHHHHhhH---------HHHHhhHHHhHHHHHHHHHHHHHHHH
Q 024305 139 ELFVREMMS--------SSNIDDARARASRALEILEKSICARASA---------EAAQSFHQENKMLKEQVEALIQENMI 201 (269)
Q Consensus 139 El~V~EM~~--------Asd~dDAraRAsRvLEafEksi~~ra~a---------e~~~~~~kEn~~LK~ql~~l~~eN~i 201 (269)
..|.+.|.. ..|+...-.|-.--++.+++-|...+.. ..+..++....+++.+++.|..--.=
T Consensus 11 ~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~R 90 (132)
T PF10392_consen 11 VQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYER 90 (132)
T ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777 7788888888888899999988875542 23345566777888888888877777
Q ss_pred HHHHHHHHHHHHHh
Q 024305 202 LKRAVSIQHERQKE 215 (269)
Q Consensus 202 LKRAv~IQheR~~e 215 (269)
||.=|...|++.+.
T Consensus 91 L~~eV~~Py~~~~~ 104 (132)
T PF10392_consen 91 LRSEVIEPYEKIQK 104 (132)
T ss_pred HHHHHhhHHHHHHH
Confidence 77777777766554
No 287
>PRK09087 hypothetical protein; Validated
Probab=26.15 E-value=69 Score=28.71 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=41.5
Q ss_pred ccccCCCCCCCCCCCCCCcchhHHHHHhhC----CCCCHHHHHHHHHHcCccHHHHHHHHHhhh
Q 024305 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNELR 85 (269)
Q Consensus 26 R~Rcssssp~r~~~~~~~~~~~l~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~ 85 (269)
|.||...-.+++.++ ..++...-|+..| -.+++++++-.++.++.|+-+++.-|+.|.
T Consensus 139 ~SRl~~gl~~~l~~p--d~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~ 200 (226)
T PRK09087 139 KSRLKAATVVEIGEP--DDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLD 200 (226)
T ss_pred HHHHhCCceeecCCC--CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 556655544555553 2245555566555 368999999999999999999999888875
No 288
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=26.00 E-value=1.8e+02 Score=26.76 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=24.3
Q ss_pred HHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHH
Q 024305 167 KSICARASAEAAQSFHQENKMLKEQVEALIQENMILK 203 (269)
Q Consensus 167 ksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLK 203 (269)
|-|.++-.- +-..-=+||.-|.+.++.+-.|+..||
T Consensus 110 k~lAE~RR~-AL~eaL~ENe~Lh~~ie~~~eEi~~lk 145 (200)
T PF07412_consen 110 KELAEERRK-ALEEALEENEKLHKEIEQKDEEIAKLK 145 (200)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443332 455566688888888888888888877
No 289
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=25.89 E-value=2.4e+02 Score=21.03 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024305 223 LHHLKQLVSQYQEQLRTLEVNNYALTMH 250 (269)
Q Consensus 223 l~~Lkql~~qyqEqir~LE~~NYaL~~H 250 (269)
+..++.-+...++.++.||.++-++...
T Consensus 8 l~~ie~~l~~~~~~i~~lE~~~~~~e~~ 35 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLEKRDAANEKD 35 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443
No 290
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=25.82 E-value=9.7e+02 Score=27.22 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 219 RSQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 219 ~~~El~~Lkql~~qyqEqir~LE~ 242 (269)
+.-|++.|...+..||+++|.-|.
T Consensus 118 lE~ekq~lQ~ti~~~q~d~ke~et 141 (1265)
T KOG0976|consen 118 LEMEKQKLQDTIQGAQDDKKENEI 141 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667777788899999886443
No 291
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=25.31 E-value=3.1e+02 Score=27.04 Aligned_cols=43 Identities=30% Similarity=0.501 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024305 191 QVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQY 233 (269)
Q Consensus 191 ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qy 233 (269)
..-.|.+||.-||+-++....+...+++..+|...|+.++.+|
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~~~ 100 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILSPY 100 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3445555555555555544555555555556655555544433
No 292
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=25.17 E-value=2.7e+02 Score=20.08 Aligned_cols=21 Identities=43% Similarity=0.400 Sum_probs=14.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 024305 184 ENKMLKEQVEALIQENMILKR 204 (269)
Q Consensus 184 En~~LK~ql~~l~~eN~iLKR 204 (269)
....|..++..|..+|..|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 555666777777777776664
No 293
>PRK12704 phosphodiesterase; Provisional
Probab=25.08 E-value=7.7e+02 Score=25.39 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHH
Q 024305 152 DDARARASRALE 163 (269)
Q Consensus 152 dDAraRAsRvLE 163 (269)
.+|+..|..+++
T Consensus 34 ~~Ae~eAe~I~k 45 (520)
T PRK12704 34 KEAEEEAKRILE 45 (520)
T ss_pred HHHHHHHHHHHH
Confidence 566776666653
No 294
>COG5281 Phage-related minor tail protein [Function unknown]
Probab=24.98 E-value=5e+02 Score=28.80 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 205 AVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTL 240 (269)
Q Consensus 205 Av~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~L 240 (269)
.-.++|.|+-.. . ..++++|+...+|..||-.|
T Consensus 528 ~~~~a~q~~l~~--q-~~l~~~kk~~l~y~~Qla~~ 560 (833)
T COG5281 528 LKEEAKQRQLQE--Q-KALLEHKKETLEYTSQLAEL 560 (833)
T ss_pred HHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHH
Confidence 334555444332 2 67888899999999998776
No 295
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=24.75 E-value=5.5e+02 Score=23.60 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=14.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 209 QHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 209 QheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~ 242 (269)
||+=.+|-.....|.+..+.-+.+-|.||+.||.
T Consensus 149 Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 149 QQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333433344445555555544
No 296
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=24.72 E-value=2e+02 Score=31.22 Aligned_cols=68 Identities=24% Similarity=0.227 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024305 157 RASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQY 233 (269)
Q Consensus 157 RAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qy 233 (269)
|+--++-+|--.|.+..... .-+|.++.+|++++.|..| +|+ .|-.=|+++|.+..|...||+++-+-
T Consensus 203 k~~~~~A~L~~~~~~~~ts~---E~~K~~vs~~e~i~~LQeE--~l~----tQ~kYQreLErlEKENkeLr~lll~k 270 (980)
T KOG0447|consen 203 RKGLLGALLLLQIQEESTSY---EQQKRKVSDKEKIDQLQEE--LLH----TQLKYQRILERLEKENKELRKLVLQK 270 (980)
T ss_pred hhhhHHHHHHHHHhhccCCH---HHHhhhhhHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHhhHHHHHHHhhc
Confidence 44445555554454433322 2467889999999999887 333 34444557777778888888776553
No 297
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=24.58 E-value=1.1e+02 Score=27.82 Aligned_cols=49 Identities=31% Similarity=0.396 Sum_probs=35.8
Q ss_pred CCCCCCCCCcchhHHHHHhhCC----CCCHHHHHHHHHHcCccHHHHHHHHHhhh
Q 024305 35 VRFSPPRSSRSHLLDQLAAIFP----DMDNQILDRALEECGDDLDSAIRSLNELR 85 (269)
Q Consensus 35 ~r~~~~~~~~~~~l~~L~~lFP----~md~q~le~aLe~cgndlDaAIksL~~L~ 85 (269)
++|.|+. ...+...|..++. .+++..++...+.|+.|+..++..|..+.
T Consensus 179 v~~~~~~--~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 179 LFFRAPT--DDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAA 231 (337)
T ss_pred EEecCCC--HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4555532 2455666665543 58899999999999999999998887654
No 298
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=24.38 E-value=5.7e+02 Score=24.84 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=47.5
Q ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHH------------------HHHHHHH
Q 024305 135 PEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLK------------------EQVEALI 196 (269)
Q Consensus 135 ~eWVEl~V~EM~~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK------------------~ql~~l~ 196 (269)
.+|.+-+ ++ |+...+.+..+++..-|.+..+.|...-.. +.+++.++..++ ..+....
T Consensus 58 d~~~~kl-~~-Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~--i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t 133 (301)
T PF06120_consen 58 DELKEKL-KE-MSSTQLRANIAKAEESIAAQKRAIEDLQKK--IDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADAT 133 (301)
T ss_pred HHHHHHH-Hh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence 4455543 33 455667777777777777777766652221 122222221111 1234556
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024305 197 QENMILKRAVSIQHERQKEYEDRSQELHH 225 (269)
Q Consensus 197 ~eN~iLKRAv~IQheR~~e~e~~~~El~~ 225 (269)
++...+.+.++..++|...-..+..+.+.
T Consensus 134 ~~la~~t~~L~~~~~~l~q~~~k~~~~q~ 162 (301)
T PF06120_consen 134 RKLAEATRELAVAQERLEQMQSKASETQA 162 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777666655555443
No 299
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=24.27 E-value=5.9e+02 Score=24.01 Aligned_cols=53 Identities=15% Similarity=0.027 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhHHH---HHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 160 RALEILEKSICARASAEA---AQSFHQENKMLKEQVEALIQENMILKRAVSIQHER 212 (269)
Q Consensus 160 RvLEafEksi~~ra~ae~---~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR 212 (269)
-+|+++|+-+.----+++ ...+..++..|...++.|-.+-.--+.-+.+++..
T Consensus 161 vLL~~ae~L~~vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~ 216 (259)
T PF08657_consen 161 VLLRGAEKLCNVYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRS 216 (259)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 688888888776543332 23344455555555544444444444444444433
No 300
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=24.15 E-value=4.5e+02 Score=22.69 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 188 LKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLR 238 (269)
Q Consensus 188 LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir 238 (269)
.|.++..+..|..-||--+.=-..-.+++...+.-+..|+.-+..||....
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333333333333334444444444444444
No 301
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=24.06 E-value=76 Score=27.94 Aligned_cols=27 Identities=26% Similarity=0.683 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHcC--ccHHHHHHHHHhhh
Q 024305 59 DNQILDRALEECG--DDLDSAIRSLNELR 85 (269)
Q Consensus 59 d~q~le~aLe~cg--ndlDaAIksL~~L~ 85 (269)
+|.|+|.+|.+|- |||-.||+-|--+.
T Consensus 83 ~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 83 SPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5889999999995 89999999988764
No 302
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=23.99 E-value=1.1e+02 Score=26.07 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024305 186 KMLKEQVEALIQENMILKRAVS 207 (269)
Q Consensus 186 ~~LK~ql~~l~~eN~iLKRAv~ 207 (269)
+.|-.+|.+|.-||.-||+-|.
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 303
>PF11236 DUF3037: Protein of unknown function (DUF3037); InterPro: IPR021398 This bacterial family of proteins has no known function.
Probab=23.98 E-value=83 Score=25.78 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.0
Q ss_pred HHHHhhCCCCCHHHHHHHHHHcC
Q 024305 49 DQLAAIFPDMDNQILDRALEECG 71 (269)
Q Consensus 49 ~~L~~lFP~md~q~le~aLe~cg 71 (269)
..|+++||+.|.++++++|+.-.
T Consensus 39 ~Rl~~f~~~~D~~~~~~~l~~~~ 61 (118)
T PF11236_consen 39 KRLRAFFPELDIDLVRAALEAFE 61 (118)
T ss_pred HHHHHhCccCCHHHHHHHHHHHH
Confidence 78999999999999998887543
No 304
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.93 E-value=4.6e+02 Score=23.75 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=13.1
Q ss_pred ccHHHHHHHHHhhhcc
Q 024305 72 DDLDSAIRSLNELRLG 87 (269)
Q Consensus 72 ndlDaAIksL~~L~L~ 87 (269)
.|++.|.+.+.++.-.
T Consensus 59 ~d~~~a~~~i~~~~~~ 74 (262)
T PF14257_consen 59 KDVEKAVKKIENLVES 74 (262)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5899999999998543
No 305
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=23.91 E-value=3.6e+02 Score=21.64 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=0.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNY 245 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NY 245 (269)
..+|+.-|-+.+....+.-...-+-+.----=-.+.+....|+..|+..+..|+++++.|-..|.
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhh
No 306
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=23.88 E-value=77 Score=23.02 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=18.5
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 024305 143 REMMSSSNIDDARARASRALEILEKSICA 171 (269)
Q Consensus 143 ~EM~~Asd~dDAraRAsRvLEafEksi~~ 171 (269)
.||...--+. ..=|.+||+-|.|+|.+
T Consensus 20 Deli~~~~I~--p~La~kVL~~FDksi~~ 46 (49)
T PF02268_consen 20 DELIQEGKIT--PQLAMKVLEQFDKSINE 46 (49)
T ss_dssp HHHHHTTSS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCC--HHHHHHHHHHHHHHHHH
Confidence 4455444443 24589999999999976
No 307
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=23.86 E-value=4.6e+02 Score=22.42 Aligned_cols=30 Identities=17% Similarity=0.547 Sum_probs=24.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024305 214 KEYEDRSQELHHLKQLVSQYQEQLRTLEVN 243 (269)
Q Consensus 214 ~e~e~~~~El~~Lkql~~qyqEqir~LE~~ 243 (269)
.||+....++..|++-|..++..+..||..
T Consensus 145 ~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 145 RDYDKTKEEVEELRKEIKELERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478888888888888888888888888754
No 308
>PRK00106 hypothetical protein; Provisional
Probab=23.81 E-value=8.5e+02 Score=25.46 Aligned_cols=8 Identities=13% Similarity=-0.043 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 024305 155 RARASRAL 162 (269)
Q Consensus 155 raRAsRvL 162 (269)
+..|..++
T Consensus 41 ~~~A~~Il 48 (535)
T PRK00106 41 EQEAVNLR 48 (535)
T ss_pred HHHHHHHH
Confidence 33333333
No 309
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=23.76 E-value=3.3e+02 Score=21.33 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024305 221 QELHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 221 ~El~~Lkql~~qyqEqir~LE 241 (269)
+-+.++|.=++--..+||.|.
T Consensus 57 ~~l~~mK~DLd~i~krir~lk 77 (88)
T PF10241_consen 57 KLLKEMKKDLDYIFKRIRSLK 77 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 335556666666666776664
No 310
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=23.62 E-value=7.1e+02 Score=25.26 Aligned_cols=58 Identities=28% Similarity=0.395 Sum_probs=25.3
Q ss_pred HhHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 184 ENKMLKEQVE--ALIQENMI-LKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 184 En~~LK~ql~--~l~~eN~i-LKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE 241 (269)
|...+..|.. .+..||.. +++-..++-.-+.+++..++++..+.+-++.-|.+++++-
T Consensus 64 ~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q~el~~l~~~~~~~~~ql~e~Q~~v~~is 124 (391)
T COG2959 64 ELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATIS 124 (391)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 4444444443 23333333 3444444444444444444444444444555555555444
No 311
>PRK09609 hypothetical protein; Provisional
Probab=23.61 E-value=2.1e+02 Score=27.97 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHH
Q 024305 223 LHHLKQLVSQYQEQLRTLEVNNYA 246 (269)
Q Consensus 223 l~~Lkql~~qyqEqir~LE~~NYa 246 (269)
.+.+++.+.-|+++++.+|..||-
T Consensus 140 ~~~~~~ki~~~~~k~~~~~~~~~~ 163 (312)
T PRK09609 140 IQKIKQKIILLEKKKKKLEKTNEE 163 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc
Confidence 677888999999999999977765
No 312
>PRK14127 cell division protein GpsB; Provisional
Probab=23.54 E-value=3.1e+02 Score=22.82 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024305 222 ELHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 222 El~~Lkql~~qyqEqir~LE 241 (269)
|+..|+.-+.+|+.++...+
T Consensus 52 e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 52 ENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHhhcccc
Confidence 45555555666666665443
No 313
>COG3143 CheZ Chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=23.42 E-value=3.8e+02 Score=24.96 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=29.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH------HhhHHHHHhhHHHhHHHHHHHHHH
Q 024305 148 SSNIDDARARASRALEILEKSICA------RASAEAAQSFHQENKMLKEQVEAL 195 (269)
Q Consensus 148 Asd~dDAraRAsRvLEafEksi~~------ra~ae~~~~~~kEn~~LK~ql~~l 195 (269)
|+.+.|||.|=.-|.+--|++... +|.+ -.+.+++|.+.|+..-...
T Consensus 48 a~aIpDArdRL~YVv~mTeqAA~r~lnaVea~~P-~qd~L~~~a~~l~~rWq~w 100 (217)
T COG3143 48 AEAIPDARDRLNYVVQMTEQAAERALNAVEASQP-HQDQLEKSAKALTQRWQDW 100 (217)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH
Confidence 445889999988887777776543 2333 3455677776666554443
No 314
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=23.40 E-value=1e+03 Score=26.17 Aligned_cols=76 Identities=28% Similarity=0.293 Sum_probs=55.0
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHE----RQK---EYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHL 251 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQhe----R~~---e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL 251 (269)
.++.-|...|++...++..|-.+--+ .||.+ |-+ |........++|.+-+.+|++.+..++.+=.+...++
T Consensus 474 ~dL~~ELqqLReERdRl~aeLqlSa~--liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~l 551 (739)
T PF07111_consen 474 TDLSLELQQLREERDRLDAELQLSAR--LIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSL 551 (739)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34667888888888888888654333 34333 222 3334556778899999999999999999988888888
Q ss_pred HHHhh
Q 024305 252 KQAEH 256 (269)
Q Consensus 252 ~qA~~ 256 (269)
+-++.
T Consensus 552 qes~e 556 (739)
T PF07111_consen 552 QESTE 556 (739)
T ss_pred HHHHH
Confidence 77654
No 315
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=23.18 E-value=2.2e+02 Score=21.72 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=27.1
Q ss_pred hHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhh
Q 024305 47 LLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 47 ~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 84 (269)
+|..|..+-=.-.++=+-.+|.+||.|-|.|..+|..+
T Consensus 8 ~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 8 TVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 34445554444344457789999999999999998764
No 316
>COG3009 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.16 E-value=12 Score=34.13 Aligned_cols=48 Identities=29% Similarity=0.484 Sum_probs=36.6
Q ss_pred HHHHHHH--HHHHHHHHHHHHHH-hHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 024305 194 ALIQENM--ILKRAVSIQHERQK-EYEDRSQELHH-LKQLVSQYQEQLRTLE 241 (269)
Q Consensus 194 ~l~~eN~--iLKRAv~IQheR~~-e~e~~~~El~~-Lkql~~qyqEqir~LE 241 (269)
+|.++++ .+||-|.|+-+.+. .|+++.+-++. +||+..|-.|+||+|+
T Consensus 139 ~L~~~~G~~~~~r~F~~e~eq~~~gyda~V~als~~~~Q~a~qia~~vk~l~ 190 (190)
T COG3009 139 RLLHDKGQPLINRPFHLELEQQGDGYDAMVRALSGGLKQLAAQIAEQVKRLP 190 (190)
T ss_pred EEeccccCccccCceeeeecccCCCHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3555556 68999999965555 88888876654 7889999999999874
No 317
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=23.03 E-value=3.2e+02 Score=20.25 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 024305 220 SQELHHLKQLVSQY 233 (269)
Q Consensus 220 ~~El~~Lkql~~qy 233 (269)
.++..+|+.++-||
T Consensus 46 ~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 46 EQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHhh
Confidence 34455556667666
No 318
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.99 E-value=2.8e+02 Score=26.57 Aligned_cols=41 Identities=41% Similarity=0.442 Sum_probs=23.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024305 212 RQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLK 252 (269)
Q Consensus 212 R~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 252 (269)
-++|.++.-.|+..|..-+..-||+|++||..|--|--.++
T Consensus 147 ~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~ 187 (290)
T COG4026 147 LQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLK 187 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555566666666666666666554443
No 319
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=22.95 E-value=5.1e+02 Score=24.46 Aligned_cols=53 Identities=28% Similarity=0.182 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHh
Q 024305 203 KRAVSIQHERQKEYEDRSQELHHLKQLV---SQYQEQLRTLEVNNYALTMHLKQAE 255 (269)
Q Consensus 203 KRAv~IQheR~~e~e~~~~El~~Lkql~---~qyqEqir~LE~~NYaL~~HL~qA~ 255 (269)
.+-|.-.-+..+++.+...|.+.||..+ .+++..+..||..|=.|+--|--..
T Consensus 55 ~~~v~~~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 55 FEFVDGVLEFLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred HHHHHhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3334344444455555555555555444 3445566777778877776664333
No 320
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=22.94 E-value=8.6e+02 Score=25.17 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 024305 187 MLKEQVEALIQE 198 (269)
Q Consensus 187 ~LK~ql~~l~~e 198 (269)
.+.+++..+..+
T Consensus 64 ~~~~~l~~~~~~ 75 (475)
T PRK10361 64 LLNNEVRSLQSI 75 (475)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 321
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=22.90 E-value=1.2e+02 Score=31.92 Aligned_cols=58 Identities=19% Similarity=0.322 Sum_probs=44.2
Q ss_pred ccccCCCCCCCCCCCCCCcchhHHHHHhhC---C-CCCHHHHHHHHHHcCccHHHHHHHHHhhhccc
Q 024305 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIF---P-DMDNQILDRALEECGDDLDSAIRSLNELRLGS 88 (269)
Q Consensus 26 R~Rcssssp~r~~~~~~~~~~~l~~L~~lF---P-~md~q~le~aLe~cgndlDaAIksL~~L~L~s 88 (269)
|.||- .++|.++.+ ..+...|..++ . .+++..++.+.+.||.|+..|+.-|..|.+..
T Consensus 167 ~SRcq---~ieF~~Ls~--~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~ 228 (605)
T PRK05896 167 ISRCQ---RYNFKKLNN--SELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFK 228 (605)
T ss_pred Hhhhh---hcccCCCCH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhc
Confidence 55774 466766423 56677777754 3 58999999999999999999999999976543
No 322
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.88 E-value=3.9e+02 Score=21.22 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=15.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 211 ERQKEYEDRSQELHHLKQLVSQYQEQLRTL 240 (269)
Q Consensus 211 eR~~e~e~~~~El~~Lkql~~qyqEqir~L 240 (269)
++..+......++..|+.-+..++++|..+
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555444
No 323
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=22.81 E-value=1.2e+02 Score=19.94 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=18.1
Q ss_pred HHHHHHHHcCccHHHHHHHHHhh
Q 024305 62 ILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 62 ~le~aLe~cgndlDaAIksL~~L 84 (269)
.+.+++...| ++|.||+.|...
T Consensus 6 ~la~~~~~~G-~~~~A~~~~~~~ 27 (44)
T PF13428_consen 6 ALARAYRRLG-QPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHcC-CHHHHHHHHHHH
Confidence 3677888888 899999999884
No 324
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=22.59 E-value=3.8e+02 Score=23.16 Aligned_cols=62 Identities=21% Similarity=0.396 Sum_probs=39.6
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE--VNNYALTM 249 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE--~~NYaL~~ 249 (269)
..|.+....|+++++.+.......+..|.. |+.+ -+..|+++|-|-+..-+.|| +.+|+|++
T Consensus 18 ~QLekqi~~l~~kiek~r~n~~drl~siR~-------ye~M--s~~~l~~llkqLEkeK~~Le~qlk~~e~rL 81 (129)
T PF15372_consen 18 DQLEKQIIILREKIEKIRGNPSDRLSSIRR-------YEQM--SVESLNQLLKQLEKEKRSLENQLKDYEWRL 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccHHHHH-------Hhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667778888888777766666666655 4444 23556666666666666665 44666654
No 325
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=22.49 E-value=9.5e+02 Score=25.56 Aligned_cols=14 Identities=43% Similarity=0.596 Sum_probs=8.1
Q ss_pred cHHHHHHHHHhhhc
Q 024305 73 DLDSAIRSLNELRL 86 (269)
Q Consensus 73 dlDaAIksL~~L~L 86 (269)
+||.|++-+..+.+
T Consensus 630 ~l~~a~~~~~~~~~ 643 (1179)
T TIGR02168 630 DLDNALELAKKLRP 643 (1179)
T ss_pred CHHHHHHHHHHcCC
Confidence 56666666655443
No 326
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=22.49 E-value=3e+02 Score=19.79 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 216 YEDRSQELHHLKQLVSQYQEQLRTL 240 (269)
Q Consensus 216 ~e~~~~El~~Lkql~~qyqEqir~L 240 (269)
+...+.++.++++-..+.+++|..|
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555555555
No 327
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.49 E-value=5.8e+02 Score=23.08 Aligned_cols=65 Identities=15% Similarity=0.204 Sum_probs=38.3
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024305 177 AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHL 251 (269)
Q Consensus 177 ~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL 251 (269)
..+++..|...|+.+++.+.+|...|+. ++++++ ..+..+++-++.-++||..++...=.|.=.+
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~----~~~~l~------~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m 107 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEV----YNEQLE------RQVASQEQELASLEQQIEQIEETRQELVPLM 107 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888888776 233322 2344444445555555555555444444333
No 328
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.34 E-value=4.3e+02 Score=24.49 Aligned_cols=51 Identities=8% Similarity=0.046 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHH
Q 024305 151 IDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILK 203 (269)
Q Consensus 151 ~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLK 203 (269)
++|-=.|..|+++.--.+..+--. ..+.++.|...|+.++|.+..+..-++
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~--ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQ--QLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345556667777766665554333 356689999999999999888765544
No 329
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=22.26 E-value=7.1e+02 Score=24.47 Aligned_cols=16 Identities=31% Similarity=0.250 Sum_probs=8.3
Q ss_pred HhhHHHhHHHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEA 194 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~ 194 (269)
..++.+...|+.++..
T Consensus 278 ~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 278 IATKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455555555555443
No 330
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=22.26 E-value=3.2e+02 Score=22.41 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=20.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 024305 183 QENKMLKEQVEALIQENMILKRAVSIQHERQKEY 216 (269)
Q Consensus 183 kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~ 216 (269)
+|=....+-.-.=++=.+-++|+-+|+.+|.+.+
T Consensus 54 KeC~~e~EDy~EClh~~Ke~~R~~aI~kqR~K~~ 87 (96)
T PF10200_consen 54 KECKLELEDYYECLHHTKEMKRMRAIRKQRDKQI 87 (96)
T ss_pred hhchhHHhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444566789999998887654
No 331
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=22.22 E-value=1.7e+02 Score=22.89 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024305 220 SQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 220 ~~El~~Lkql~~qyqEqir~LE~ 242 (269)
.+.+++|-+....-+|+|.|||.
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777778888999999995
No 332
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.16 E-value=93 Score=30.14 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=40.1
Q ss_pred CCCCCCCCCCcchhHHHHHhhC----CCCCHHHHHHHHHHcCccHHHHHHHHHhhhcc
Q 024305 34 PVRFSPPRSSRSHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNELRLG 87 (269)
Q Consensus 34 p~r~~~~~~~~~~~l~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~L~ 87 (269)
.++|.+.. ...+...|..++ -.++++.++.+.+.+|.|+..|+.-|..|.+-
T Consensus 180 ~v~f~~l~--~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 180 RFNFKRIP--LEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAF 235 (397)
T ss_pred HhhcCCCC--HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 35566632 255666777765 46999999999999999999999999987643
No 333
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=21.88 E-value=4e+02 Score=20.99 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=43.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHH
Q 024305 140 LFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALI 196 (269)
Q Consensus 140 l~V~EM~~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~ 196 (269)
..|-+|.--.+.++|...=..-++.+++.|..-... ...++++...||.+|..+.
T Consensus 50 ~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~--~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 50 KLVGNVLVKQEKEEARTELKERLETIELRIKRLERQ--EEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 677788888999999999999899999888865544 4557777777777776554
No 334
>PRK14127 cell division protein GpsB; Provisional
Probab=21.83 E-value=1.9e+02 Score=24.07 Aligned_cols=13 Identities=31% Similarity=0.248 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 024305 192 VEALIQENMILKR 204 (269)
Q Consensus 192 l~~l~~eN~iLKR 204 (269)
++.+.+||.-||.
T Consensus 39 ye~l~~e~~~Lk~ 51 (109)
T PRK14127 39 YEAFQKEIEELQQ 51 (109)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 335
>PHA00276 phage lambda Rz-like lysis protein
Probab=21.83 E-value=3.9e+02 Score=23.53 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024305 224 HHLKQLVSQYQEQLRTLEVNNYALTMHLKQ 253 (269)
Q Consensus 224 ~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 253 (269)
+.+-++-.+||+.+--.|-.|--|.-+|+-
T Consensus 52 qaVaal~~~yqkEladaK~~~DrLiadlRs 81 (144)
T PHA00276 52 AAINAVSKEYQEDLAALEGSTDRVIADLRS 81 (144)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 334457789999999999998888888764
No 336
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=21.82 E-value=1.9e+02 Score=29.93 Aligned_cols=7 Identities=43% Similarity=0.667 Sum_probs=3.6
Q ss_pred CCCCcch
Q 024305 130 FQLDGPE 136 (269)
Q Consensus 130 ~p~~g~e 136 (269)
.|.|++.
T Consensus 94 v~~d~~~ 100 (488)
T PF06548_consen 94 VPADGSE 100 (488)
T ss_pred eccccch
Confidence 4555554
No 337
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.76 E-value=3e+02 Score=19.39 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=16.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKR 204 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKR 204 (269)
+.++..+||..-+.|..+|..|++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~ 26 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKK 26 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777766653
No 338
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.65 E-value=4.7e+02 Score=28.12 Aligned_cols=85 Identities=20% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-----HHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Q 024305 156 ARASRALEILEK-----SICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQK-EYEDRSQELHHLKQL 229 (269)
Q Consensus 156 aRAsRvLEafEk-----si~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~-e~e~~~~El~~Lkql 229 (269)
.|+.++|..+.. |..+|.-.++.+.++.+...|+..++.+.+...-.++-+.-|..+++ .+.=-..+...++++
T Consensus 614 ~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~i 693 (717)
T PF10168_consen 614 KRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEI 693 (717)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 024305 230 VSQYQEQLRTL 240 (269)
Q Consensus 230 ~~qyqEqir~L 240 (269)
+.|=-++|+.+
T Consensus 694 L~~~~~~I~~~ 704 (717)
T PF10168_consen 694 LKQQGEEIDEL 704 (717)
T ss_pred HHHHHHHHHHH
No 339
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=21.63 E-value=6.7e+02 Score=23.46 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Q 024305 153 DARARASRALEILEKSICARASAEAA 178 (269)
Q Consensus 153 DAraRAsRvLEafEksi~~ra~ae~~ 178 (269)
.|+.++-.+...||+++..+.+|-.+
T Consensus 74 ~aq~e~q~Aa~~yerA~~~h~aAKe~ 99 (239)
T PF05276_consen 74 EAQQEAQKAALQYERANSMHAAAKEM 99 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666777888888887765443
No 340
>PF13991 BssS: BssS protein family
Probab=21.51 E-value=92 Score=24.43 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Q 024305 224 HHLKQLVSQYQEQLRTLEVNNYA 246 (269)
Q Consensus 224 ~~Lkql~~qyqEqir~LE~~NYa 246 (269)
.+.|||++.-+++|..||-+-|.
T Consensus 45 e~Ar~Li~~L~~~I~kiE~se~~ 67 (73)
T PF13991_consen 45 EMARQLISILEAGIDKIESSEYQ 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcc
Confidence 35789999999999999998875
No 341
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.49 E-value=8.8e+02 Score=24.76 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=41.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKE-YEDRSQELHHLKQLVSQYQEQLRTLEVNNYAL 247 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e-~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL 247 (269)
+-++-..|+.+++.|.++.+-|-+.+...-.|..+ -...-.|+..|+.-+....++++.++..-..+
T Consensus 34 ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 34 LDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTL 101 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44566667777777777777766666633334332 34466777777777777777777666554433
No 342
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=21.45 E-value=1.3e+02 Score=29.20 Aligned_cols=54 Identities=24% Similarity=0.355 Sum_probs=40.0
Q ss_pred cccccCCCCCCCCCCCCCCcchhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 25 KRIRCSSSSPVRFSPPRSSRSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 25 KR~Rcssssp~r~~~~~~~~~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
=|.||. .++|.++ ..+.....|...++..+...+..++.-||.+.-.|+.-+..
T Consensus 188 i~SRc~---~i~l~~l--~~~~i~~~L~~~~~~~~~~~~~~l~~~s~Gsp~~Al~ll~~ 241 (365)
T PRK07471 188 IRSRCR---KLRLRPL--APEDVIDALAAAGPDLPDDPRAALAALAEGSVGRALRLAGG 241 (365)
T ss_pred hhccce---EEECCCC--CHHHHHHHHHHhcccCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 467774 5667764 23667788888888888777778888999899888877653
No 343
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=21.37 E-value=9.2e+02 Score=24.95 Aligned_cols=8 Identities=13% Similarity=0.401 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 024305 235 EQLRTLEV 242 (269)
Q Consensus 235 Eqir~LE~ 242 (269)
|+++.|+.
T Consensus 99 ek~~~l~~ 106 (475)
T PRK10361 99 DKIRQMIN 106 (475)
T ss_pred HHHHHHHH
Confidence 33333333
No 344
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=21.26 E-value=2.1e+02 Score=27.80 Aligned_cols=6 Identities=67% Similarity=0.645 Sum_probs=2.4
Q ss_pred HHHHHH
Q 024305 186 KMLKEQ 191 (269)
Q Consensus 186 ~~LK~q 191 (269)
..||+|
T Consensus 33 ~elkeq 38 (291)
T KOG4466|consen 33 SELKEQ 38 (291)
T ss_pred hHHHHH
Confidence 344443
No 345
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=21.22 E-value=6.3e+02 Score=22.99 Aligned_cols=98 Identities=27% Similarity=0.300 Sum_probs=59.7
Q ss_pred CCChHHHHHHHHHHHHHHHHH--HHHHhhHH-HHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 024305 148 SSNIDDARARASRALEILEKS--ICARASAE-AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELH 224 (269)
Q Consensus 148 Asd~dDAraRAsRvLEafEks--i~~ra~ae-~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~ 224 (269)
..++.-+-+-|.++|+..-+= ...+..|+ +....++=....+..+.....+|..|+..+. ++..+|..+ |+
T Consensus 122 ~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~---~~L~~~~~k---L~ 195 (264)
T PF06008_consen 122 SEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIR---DDLNDYNAK---LQ 195 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHH---HHHHHHHHH---HH
Confidence 346777888888999887432 11122221 1111111122345667777889999887753 366777665 77
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024305 225 HLKQLVSQYQEQLRTLEVNNYALTMHL 251 (269)
Q Consensus 225 ~Lkql~~qyqEqir~LE~~NYaL~~HL 251 (269)
.|+.++.+.+++++.-+.-|-.=.-.|
T Consensus 196 Dl~~~l~eA~~~~~ea~~ln~~n~~~l 222 (264)
T PF06008_consen 196 DLRDLLNEAQNKTREAEDLNRANQKNL 222 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888776555444333
No 346
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.15 E-value=8.6e+02 Score=25.35 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHH
Q 024305 219 RSQELHHLKQLVSQYQEQLRTLE--VNNYALTMH 250 (269)
Q Consensus 219 ~~~El~~Lkql~~qyqEqir~LE--~~NYaL~~H 250 (269)
+..|+..||..+....+.|..|+ .+.||=++|
T Consensus 160 mekeI~elk~kl~~aE~~i~El~k~~~h~a~slh 193 (542)
T KOG0993|consen 160 MEKEINELKKKLAKAEQRIDELSKAKHHKAESLH 193 (542)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhcccchHHH
Confidence 34788999999999999999998 456666666
No 347
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=21.12 E-value=8.4e+02 Score=24.38 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=42.1
Q ss_pred ccccCCCCCCCCCCCCCCcchhHHHHHhhC---C-CCCHHHHHHHHHHcCccHHHHHHHHHhhhcc
Q 024305 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIF---P-DMDNQILDRALEECGDDLDSAIRSLNELRLG 87 (269)
Q Consensus 26 R~Rcssssp~r~~~~~~~~~~~l~~L~~lF---P-~md~q~le~aLe~cgndlDaAIksL~~L~L~ 87 (269)
|.||- .++|.+... ..+...|..++ . .+++..++.+.+.+|+|+..|+.-|..+.+.
T Consensus 169 ~sRc~---~v~f~~l~~--~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~ 229 (451)
T PRK06305 169 LSRCQ---KMHLKRIPE--ETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGL 229 (451)
T ss_pred HHhce---EEeCCCCCH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 44663 456665322 56667777654 2 4899999999999999999999999887653
No 348
>PHA03162 hypothetical protein; Provisional
Probab=21.06 E-value=1.2e+02 Score=26.34 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024305 187 MLKEQVEALIQENMILKRAVSI 208 (269)
Q Consensus 187 ~LK~ql~~l~~eN~iLKRAv~I 208 (269)
.|-.+|.+|.-||.-||+-+.-
T Consensus 17 eLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 17 DLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677788888888887743
No 349
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=20.89 E-value=6.4e+02 Score=25.33 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCChHHHHH
Q 024305 137 WVELFVREMMSSSNIDDARA 156 (269)
Q Consensus 137 WVEl~V~EM~~Asd~dDAra 156 (269)
---+|++|+.+-+=+.|-|.
T Consensus 197 rN~rLIsei~SesvVpDvrs 216 (410)
T KOG4715|consen 197 RNHRLISEILSESVVPDVRS 216 (410)
T ss_pred hhhHHHHHHhccccccchhh
Confidence 34678999999999999875
No 350
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=20.61 E-value=2.6e+02 Score=25.75 Aligned_cols=16 Identities=44% Similarity=0.484 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 024305 229 LVSQYQEQLRTLEVNN 244 (269)
Q Consensus 229 l~~qyqEqir~LE~~N 244 (269)
-.+-|-||+-+||.||
T Consensus 102 ~daf~Ke~larlEen~ 117 (192)
T KOG4083|consen 102 QDAFYKEQLARLEENS 117 (192)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4555666666666655
No 351
>PF08941 USP8_interact: USP8 interacting; InterPro: IPR015036 This protein interacts with the UBP deubiquitinating enzyme USP8. ; GO: 0016881 acid-amino acid ligase activity, 0031386 protein tag, 0016567 protein ubiquitination; PDB: 2FZP_A 2GWF_B 2OGB_A.
Probab=20.58 E-value=41 Score=30.48 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhhHHHHHHH
Q 024305 188 LKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVS----------QYQEQLRTLEVNNYALTMHL 251 (269)
Q Consensus 188 LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~----------qyqEqir~LE~~NYaL~~HL 251 (269)
|++.++.-..+-+-||.-.+.|+.|..| +.+|++.||..+. -+-+|+..-|+..++-++++
T Consensus 2 LR~lVq~Qq~~i~ELk~~~aeq~~ql~e---qkREl~lLk~yirAlR~sNP~~rni~dq~e~~evm~W~~sL~~ 72 (179)
T PF08941_consen 2 LRELVQQQQTKIAELKKEQAEQQQQLSE---QKRELELLKEYIRALRSSNPVMRNIGDQLERDEVMQWVNSLPP 72 (179)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHSEB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCCCcCChHHHHhHHHHHHHHHhCCh
Confidence 3444444555556677777777777666 5567777776543 45677777788888777765
No 352
>PRK01156 chromosome segregation protein; Provisional
Probab=20.57 E-value=1.1e+03 Score=25.33 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=14.1
Q ss_pred CCCCCCCcchhHHHHHh-hCCC
Q 024305 37 FSPPRSSRSHLLDQLAA-IFPD 57 (269)
Q Consensus 37 ~~~~~~~~~~~l~~L~~-lFP~ 57 (269)
.++-+++..++++++.- ||..
T Consensus 29 ~G~NGsGKSsileAI~~aL~g~ 50 (895)
T PRK01156 29 TGKNGAGKSSIVDAIRFALFTD 50 (895)
T ss_pred ECCCCCCHHHHHHHHHHHHcCC
Confidence 34445567888999874 7754
No 353
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.55 E-value=1.1e+03 Score=25.64 Aligned_cols=55 Identities=18% Similarity=0.264 Sum_probs=41.4
Q ss_pred ccccCCCCCCCCCCCCCCcchhHHHHHhhCC----CCCHHHHHHHHHHcCccHHHHHHHHHhhh
Q 024305 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIFP----DMDNQILDRALEECGDDLDSAIRSLNELR 85 (269)
Q Consensus 26 R~Rcssssp~r~~~~~~~~~~~l~~L~~lFP----~md~q~le~aLe~cgndlDaAIksL~~L~ 85 (269)
|.||- -++|.+... ..+..+|..++- .+++..++.+.+.+|.|+-.|+.-|..+.
T Consensus 166 lSRCq---~feFkpLs~--eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaI 224 (702)
T PRK14960 166 ISRCL---QFTLRPLAV--DEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAI 224 (702)
T ss_pred HHhhh---eeeccCCCH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 56773 455655322 667788877664 58899999999999999999998877654
No 354
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=20.31 E-value=34 Score=35.83 Aligned_cols=69 Identities=23% Similarity=0.254 Sum_probs=0.0
Q ss_pred hhHHHh--HHHHHHHHHHHHHHHHHHHHHHHH-HHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024305 180 SFHQEN--KMLKEQVEALIQENMILKRAVSIQ-HER----QKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALT 248 (269)
Q Consensus 180 ~~~kEn--~~LK~ql~~l~~eN~iLKRAv~IQ-heR----~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~ 248 (269)
++..|. ..+++.+.+|.+||..||..+.-. .++ +...++.++....|..-.....++|..|+...-.|.
T Consensus 447 ~l~~El~~~~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq 522 (713)
T PF05622_consen 447 NLSAELNPAELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQ 522 (713)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred chhhhccchHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 357888889999999998665433 222 234444444444444444444455555544444433
No 355
>PHA03155 hypothetical protein; Provisional
Probab=20.20 E-value=1.4e+02 Score=25.47 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024305 187 MLKEQVEALIQENMILKRAVS 207 (269)
Q Consensus 187 ~LK~ql~~l~~eN~iLKRAv~ 207 (269)
.|-.+|.+|.-||.-||+.+.
T Consensus 12 eLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 12 ELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355567777888888887774
No 356
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=20.15 E-value=8.1e+02 Score=23.82 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 024305 222 ELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 222 El~~Lkql~~qyqEqir~LE~ 242 (269)
.++++.++=..|++|++.|+.
T Consensus 84 r~~~~~~i~~~~~~q~~~l~~ 104 (332)
T TIGR01541 84 RLDARLQIDRTFRKQQRDLNK 104 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555544
No 357
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=20.13 E-value=2.9e+02 Score=18.69 Aligned_cols=39 Identities=26% Similarity=0.310 Sum_probs=27.6
Q ss_pred hhHHHHHhhCCCCCHHH---HHHHHHHcCccHHHHHHHHHhhhc
Q 024305 46 HLLDQLAAIFPDMDNQI---LDRALEECGDDLDSAIRSLNELRL 86 (269)
Q Consensus 46 ~~l~~L~~lFP~md~q~---le~aLe~cgndlDaAIksL~~L~L 86 (269)
.++..+...+|+ +..+ +..++-..| ++|.|++.|..+-.
T Consensus 12 ~~~~~~l~~~p~-~~~~~~~la~~~~~~g-~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 12 ELLEKALQRNPD-NPEARLLLAQCYLKQG-QYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHTTT-SHHHHHHHHHHHHHTT--HHHHHHHHHCCHG
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 356778888998 4443 566777777 99999999988643
No 358
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=20.11 E-value=9.2e+02 Score=25.44 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 024305 219 RSQELHHLKQLVSQYQEQLRTLEVN 243 (269)
Q Consensus 219 ~~~El~~Lkql~~qyqEqir~LE~~ 243 (269)
..+.+..|...+.+++.|+..||+.
T Consensus 383 ~~~~l~~le~~l~~~~~~~~~L~~~ 407 (656)
T PRK06975 383 LDSQFAQLDGKLADAQSAQQALEQQ 407 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666666666543
No 359
>PF08989 DUF1896: Domain of unknown function (DUF1896); InterPro: IPR015082 This domain is found in a set of hypothetical bacterial proteins. ; PDB: 2APL_A.
Probab=20.06 E-value=2.2e+02 Score=24.97 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=25.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHH
Q 024305 148 SSNIDDARARASRALEILEKSICARASAEAAQSFHQ 183 (269)
Q Consensus 148 Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~k 183 (269)
+.|-+=-+.||..++++||.+|.+.-....++.+..
T Consensus 27 ~~d~~fI~~Rad~Aa~aYe~A~~~G~~~~~A~e~A~ 62 (144)
T PF08989_consen 27 AGDTEFIEERADMAAEAYEQAVRSGYSHDEAEEIAM 62 (144)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHHHT--HHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 455555688999999999999999877765554433
No 360
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.05 E-value=6e+02 Score=22.25 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 024305 192 VEALIQENMILKRAVS 207 (269)
Q Consensus 192 l~~l~~eN~iLKRAv~ 207 (269)
++.|+.-+..|+.++.
T Consensus 4 ~~~L~~~d~~L~~~L~ 19 (188)
T PF10018_consen 4 AEDLIEADDELSSALE 19 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555543
No 361
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.01 E-value=7.5e+02 Score=23.38 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=20.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH---HhhHHHHHhhHHHhHHHHHHHHHH
Q 024305 148 SSNIDDARARASRALEILEKSICA---RASAEAAQSFHQENKMLKEQVEAL 195 (269)
Q Consensus 148 Asd~dDAraRAsRvLEafEksi~~---ra~ae~~~~~~kEn~~LK~ql~~l 195 (269)
+.|-++|..-|-.+++..|..|.. +...++..-++++...+|+++...
T Consensus 139 ~~dP~~A~~ian~l~~~~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~a 189 (362)
T TIGR01010 139 AFDAEEAQKINQRLLKEGERLINRLNERARKDTIAFAENEVKEAEQRLNAT 189 (362)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554433333322 222233333444444444444333
Done!