Query 024305
Match_columns 269
No_of_seqs 67 out of 69
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 05:56:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgl_A TOLL-interacting protei 99.1 2.1E-10 7E-15 83.7 6.1 48 44-91 9-56 (59)
2 2dhy_A CUE domain-containing p 99.1 3.7E-10 1.3E-14 84.5 7.1 45 45-89 19-63 (67)
3 1p3q_Q VPS9P, vacuolar protein 97.9 2.3E-06 8E-11 61.7 1.6 40 45-84 13-52 (54)
4 1otr_A Protein CUE2; protein-p 97.7 3.9E-05 1.3E-09 54.1 4.6 39 46-84 6-44 (49)
5 2di0_A Activating signal coint 96.4 0.0053 1.8E-07 46.4 5.3 39 45-83 14-52 (71)
6 2jee_A YIIU; FTSZ, septum, coi 95.9 0.11 3.8E-06 40.1 10.9 69 160-240 6-74 (81)
7 1z96_A DNA-damage, UBA-domain 94.7 0.055 1.9E-06 34.7 4.9 35 45-81 5-39 (40)
8 1vg5_A RSGI RUH-014, rhomboid 94.6 0.099 3.4E-06 39.3 6.8 38 44-83 29-66 (73)
9 1vej_A Riken cDNA 4931431F19; 94.4 0.094 3.2E-06 39.6 6.2 37 45-83 30-67 (74)
10 2v66_B Nuclear distribution pr 94.1 0.61 2.1E-05 37.7 10.7 69 185-253 5-74 (111)
11 2v71_A Nuclear distribution pr 93.3 0.93 3.2E-05 39.6 11.3 74 181-254 54-128 (189)
12 2dae_A KIAA0733 protein; mitog 93.1 0.083 2.8E-06 40.2 3.8 38 46-83 12-49 (75)
13 2g3q_A Protein YBL047C; endocy 93.0 0.15 5.2E-06 33.6 4.7 37 45-83 5-41 (43)
14 2knz_A Ubiquilin-4; cytoplasm, 93.0 0.16 5.6E-06 35.4 5.0 36 46-83 13-49 (53)
15 2jy5_A Ubiquilin-1; UBA, alter 92.6 0.19 6.3E-06 35.0 4.8 37 45-83 13-50 (52)
16 2dah_A Ubiquilin-3; UBA domain 92.4 0.36 1.2E-05 34.0 6.2 38 45-84 10-48 (54)
17 2cpw_A CBL-interacting protein 92.0 0.6 2.1E-05 33.8 7.1 37 45-83 20-57 (64)
18 1ify_A HHR23A, UV excision rep 91.9 0.2 6.8E-06 34.4 4.2 37 45-83 9-45 (49)
19 2bwb_A Ubiquitin-like protein 91.4 0.33 1.1E-05 33.1 4.8 37 45-83 8-45 (46)
20 2ejs_A Autocrine motility fact 91.4 0.39 1.3E-05 34.9 5.4 42 44-86 13-54 (58)
21 1wji_A Tudor domain containing 91.1 0.37 1.3E-05 34.9 5.1 37 45-83 10-46 (63)
22 1wj7_A Hypothetical protein (R 89.9 0.46 1.6E-05 38.1 5.2 37 46-83 41-77 (104)
23 1wr1_B Ubiquitin-like protein 89.8 0.56 1.9E-05 33.6 5.1 36 46-83 19-55 (58)
24 4g3o_A E3 ubiquitin-protein li 89.7 0.59 2E-05 34.0 5.1 38 45-83 18-55 (58)
25 2dak_A Ubiquitin carboxyl-term 88.7 0.88 3E-05 32.5 5.5 37 45-83 10-46 (63)
26 3hnw_A Uncharacterized protein 88.5 5.1 0.00017 33.0 10.7 96 135-244 34-133 (138)
27 3oja_B Anopheles plasmodium-re 88.5 12 0.00042 35.3 14.9 75 179-256 505-579 (597)
28 2ekf_A Ancient ubiquitous prot 88.5 0.66 2.3E-05 34.0 4.7 41 45-86 14-54 (61)
29 1veg_A NEDD8 ultimate buster-1 87.8 0.85 2.9E-05 35.1 5.2 37 45-83 30-66 (83)
30 2cp9_A EF-TS, EF-TSMT, elongat 87.8 0.35 1.2E-05 35.6 2.9 41 45-86 10-50 (64)
31 2crn_A Ubash3A protein; compac 86.7 1.5 5E-05 31.8 5.7 38 45-84 10-48 (64)
32 2dag_A Ubiquitin carboxyl-term 86.7 1.1 3.8E-05 33.3 5.1 38 45-84 10-48 (74)
33 1wiv_A UBP14, ubiquitin-specif 85.9 1.4 4.6E-05 32.7 5.3 37 45-83 30-66 (73)
34 2dq0_A Seryl-tRNA synthetase; 85.0 7.7 0.00026 37.3 11.4 97 163-268 12-114 (455)
35 1whc_A RSGI RUH-027, UBA/UBX 3 84.9 2.4 8.1E-05 30.5 6.0 37 45-83 10-47 (64)
36 2dkl_A Trinucleotide repeat co 84.2 1.6 5.5E-05 33.4 5.1 41 45-87 22-62 (85)
37 1ses_A Seryl-tRNA synthetase; 83.0 5.7 0.0002 37.7 9.5 95 163-268 12-109 (421)
38 2ekk_A UBA domain from E3 ubiq 82.7 1.8 6.2E-05 29.0 4.3 36 45-83 10-45 (47)
39 2dai_A Ubadc1, ubiquitin assoc 82.6 2.2 7.5E-05 32.4 5.3 38 45-84 30-67 (83)
40 3qne_A Seryl-tRNA synthetase, 82.4 14 0.00046 36.3 12.1 64 184-247 41-104 (485)
41 1wle_A Seryl-tRNA synthetase; 80.8 24 0.00083 34.5 13.2 66 180-246 74-148 (501)
42 2dfs_A Myosin-5A; myosin-V, in 80.8 30 0.001 36.7 14.9 30 177-206 985-1014(1080)
43 2dna_A Unnamed protein product 80.7 1.6 5.6E-05 32.3 3.8 36 47-84 22-58 (67)
44 1ci6_A Transcription factor AT 80.2 2.9 9.8E-05 30.1 4.9 20 184-203 24-43 (63)
45 1hjb_A Ccaat/enhancer binding 79.8 3.9 0.00014 31.5 5.9 38 188-235 41-78 (87)
46 2oqq_A Transcription factor HY 78.7 6.3 0.00022 27.0 5.9 35 215-252 7-41 (42)
47 1dv0_A DNA repair protein HHR2 78.7 0.83 2.8E-05 31.1 1.6 37 45-83 5-41 (47)
48 1gk7_A Vimentin; intermediate 78.6 3.4 0.00012 27.5 4.5 32 221-252 6-37 (39)
49 2lbc_A Ubiquitin carboxyl-term 76.6 3.6 0.00012 32.6 5.0 37 45-83 79-115 (126)
50 2zxx_A Geminin; coiled-coil, c 76.1 7.2 0.00025 29.8 6.3 44 212-255 25-68 (79)
51 1vdl_A Ubiquitin carboxyl-term 75.2 5.4 0.00018 30.6 5.3 40 45-84 25-64 (80)
52 2w6b_A RHO guanine nucleotide 73.1 18 0.00062 26.1 7.3 21 188-208 15-35 (56)
53 1hjb_A Ccaat/enhancer binding 73.0 8.4 0.00029 29.7 6.1 30 178-207 45-74 (87)
54 3oja_B Anopheles plasmodium-re 72.9 32 0.0011 32.5 11.4 35 181-215 528-562 (597)
55 1gd2_E Transcription factor PA 72.9 7.2 0.00025 28.9 5.5 40 162-203 31-70 (70)
56 1gu4_A CAAT/enhancer binding p 72.2 4.6 0.00016 30.5 4.3 25 180-204 47-71 (78)
57 1ci6_A Transcription factor AT 72.1 23 0.00078 25.3 7.8 29 178-206 32-60 (63)
58 2dq3_A Seryl-tRNA synthetase; 69.9 5.8 0.0002 37.7 5.5 69 181-249 35-103 (425)
59 2cwb_A Chimera of immunoglobul 69.1 4.6 0.00016 32.3 3.9 38 45-83 67-104 (108)
60 1v92_A NSFL1 cofactor P47; 3-h 68.1 9.3 0.00032 24.8 4.7 38 45-83 6-43 (46)
61 2w83_C C-JUN-amino-terminal ki 67.1 40 0.0014 25.7 8.5 32 212-243 42-73 (77)
62 1nkp_B MAX protein, MYC proto- 66.7 12 0.00042 27.5 5.7 39 200-238 40-78 (83)
63 3s4r_A Vimentin; alpha-helix, 66.2 8 0.00027 29.8 4.6 35 222-256 10-44 (93)
64 1vek_A UBP14, ubiquitin-specif 66.1 11 0.00036 28.6 5.2 38 45-84 30-68 (84)
65 2yy0_A C-MYC-binding protein; 66.0 8 0.00027 27.1 4.2 28 177-204 20-47 (53)
66 4ae4_A Ubiquitin-associated pr 65.0 5.9 0.0002 31.8 3.8 35 47-83 79-113 (118)
67 4fla_A Regulation of nuclear P 61.8 69 0.0023 26.6 12.9 78 155-251 67-144 (152)
68 1aip_C EF-TS, elongation facto 61.3 4.7 0.00016 35.4 2.8 27 63-89 21-47 (196)
69 2dfs_A Myosin-5A; myosin-V, in 60.7 46 0.0016 35.4 10.6 17 58-75 673-689 (1080)
70 3lss_A Seryl-tRNA synthetase; 59.1 1.1E+02 0.0036 30.0 12.2 37 230-268 113-149 (484)
71 1uii_A Geminin; human, DNA rep 58.4 38 0.0013 26.1 7.1 25 179-203 42-66 (83)
72 1i84_S Smooth muscle myosin he 58.0 85 0.0029 33.3 12.1 14 58-71 695-708 (1184)
73 1xb2_B EF-TS, elongation facto 57.9 5.6 0.00019 36.6 2.8 21 63-83 22-42 (291)
74 2wt7_A Proto-oncogene protein 57.7 19 0.00066 25.5 5.1 37 184-230 24-60 (63)
75 2j5u_A MREC protein; bacterial 57.1 6.7 0.00023 34.8 3.1 20 211-230 40-59 (255)
76 1wgn_A UBAP1, ubiquitin associ 57.0 8.3 0.00028 28.5 3.0 36 46-83 21-56 (63)
77 1gu4_A CAAT/enhancer binding p 57.0 13 0.00044 28.0 4.2 39 184-232 37-75 (78)
78 1wlq_A Geminin; coiled-coil; 2 56.9 34 0.0011 26.4 6.6 34 213-246 30-63 (83)
79 3ghg_A Fibrinogen alpha chain; 56.8 72 0.0025 32.1 10.5 25 221-245 131-155 (562)
80 1oai_A Nuclear RNA export fact 56.2 14 0.0005 26.2 4.2 31 56-86 18-48 (59)
81 1a93_B MAX protein, coiled coi 55.7 16 0.00056 23.9 4.0 20 222-241 15-34 (34)
82 2py8_A Hypothetical protein RB 55.4 32 0.0011 28.9 6.8 30 129-167 48-77 (147)
83 3he5_B Synzip2; heterodimeric 55.3 50 0.0017 23.0 6.7 41 185-242 5-45 (52)
84 3iox_A AGI/II, PA; alpha helix 55.2 1.7E+02 0.0057 29.0 13.4 71 156-241 23-93 (497)
85 2dal_A Protein KIAA0794; FAS a 54.8 23 0.00078 25.0 5.1 38 45-83 16-53 (62)
86 3a7p_A Autophagy protein 16; c 54.7 98 0.0033 26.2 10.2 36 212-247 94-129 (152)
87 4dzn_A Coiled-coil peptide CC- 53.8 28 0.00097 22.2 4.7 24 181-204 7-30 (33)
88 2wvr_A Geminin; DNA replicatio 53.2 37 0.0013 30.2 7.1 26 178-203 110-135 (209)
89 1uii_A Geminin; human, DNA rep 52.8 32 0.0011 26.5 5.9 25 180-204 50-74 (83)
90 4ae4_A Ubiquitin-associated pr 51.8 15 0.00051 29.4 4.1 38 45-84 9-46 (118)
91 2ooa_A E3 ubiquitin-protein li 51.5 20 0.00068 25.5 4.2 40 45-86 12-51 (52)
92 2cp8_A NEXT to BRCA1 gene 1 pr 51.5 13 0.00043 26.5 3.2 37 47-85 12-49 (54)
93 4emc_A Monopolin complex subun 51.1 58 0.002 28.5 7.9 46 165-210 7-54 (190)
94 3na7_A HP0958; flagellar bioge 50.5 84 0.0029 27.3 9.1 20 219-238 65-84 (256)
95 1tr8_A Conserved protein (MTH1 50.2 13 0.00043 29.3 3.3 33 48-81 69-101 (102)
96 3oja_A Leucine-rich immune mol 50.1 87 0.003 29.0 9.6 36 219-254 426-461 (487)
97 3vp9_A General transcriptional 49.0 42 0.0014 26.2 6.1 15 229-243 69-83 (92)
98 1go4_E MAD1 (mitotic arrest de 49.0 87 0.003 24.7 8.0 21 235-255 75-95 (100)
99 4emc_A Monopolin complex subun 48.7 67 0.0023 28.1 8.0 47 192-241 22-68 (190)
100 2dam_A ETEA protein; KIAA0887, 48.6 27 0.00092 25.2 4.7 39 45-83 19-57 (67)
101 1c1g_A Tropomyosin; contractIl 48.1 1E+02 0.0035 24.5 11.1 22 222-243 77-98 (284)
102 1c1g_A Tropomyosin; contractIl 47.8 1E+02 0.0036 24.5 11.9 29 218-246 80-108 (284)
103 2lva_A Ubiquitin carboxyl-term 53.4 3.9 0.00013 33.9 0.0 44 45-88 19-62 (129)
104 2dzl_A Protein FAM100B; UBA-li 47.5 23 0.00077 25.6 4.1 37 46-83 19-55 (66)
105 3ka1_A RBCX protein; chaperone 47.0 75 0.0026 26.1 7.6 29 129-166 48-76 (126)
106 1dip_A Delta-sleep-inducing pe 46.6 11 0.00039 28.7 2.4 17 183-199 15-31 (78)
107 3e7l_A Transcriptional regulat 46.0 6.2 0.00021 27.3 0.9 26 57-82 18-43 (63)
108 3m9b_A Proteasome-associated A 45.2 25 0.00086 31.9 4.9 20 222-241 76-95 (251)
109 2d9s_A CBL E3 ubiquitin protei 45.1 28 0.00096 24.8 4.1 38 45-84 10-47 (53)
110 4dzn_A Coiled-coil peptide CC- 45.1 23 0.00078 22.7 3.3 21 184-204 3-23 (33)
111 1dip_A Delta-sleep-inducing pe 44.8 17 0.0006 27.7 3.2 31 221-251 15-45 (78)
112 3k9o_A Ubiquitin-conjugating e 44.5 30 0.001 29.3 5.0 35 47-83 166-200 (201)
113 1deb_A APC protein, adenomatou 43.7 85 0.0029 22.3 7.3 19 188-206 8-26 (54)
114 1jnm_A Proto-oncogene C-JUN; B 42.9 40 0.0014 23.6 4.8 17 187-203 26-42 (62)
115 1t6f_A Geminin; coiled-coil, c 41.8 35 0.0012 22.7 3.9 25 179-203 10-34 (37)
116 3e21_A HFAF1, FAS-associated f 41.7 33 0.0011 23.3 3.9 36 45-80 6-41 (45)
117 1ik9_A DNA repair protein XRCC 41.0 1.8E+02 0.0061 25.3 11.7 53 180-239 150-208 (213)
118 4e29_A Chimeric WZZB chain len 41.0 1.6E+02 0.0054 26.3 9.5 22 158-179 99-120 (248)
119 3hx3_A Retinaldehyde-binding p 40.9 33 0.0011 30.6 5.0 30 55-84 87-116 (316)
120 1nkp_A C-MYC, MYC proto-oncoge 40.9 79 0.0027 23.7 6.4 8 200-207 45-52 (88)
121 2oqq_A Transcription factor HY 40.5 49 0.0017 22.6 4.6 27 180-206 14-40 (42)
122 1nkp_B MAX protein, MYC proto- 40.0 86 0.003 22.8 6.4 30 176-205 47-76 (83)
123 3mq9_A Bone marrow stromal ant 40.0 2.2E+02 0.0076 26.1 12.7 68 186-253 376-461 (471)
124 1umq_A Photosynthetic apparatu 39.7 15 0.0005 27.6 2.1 25 58-82 41-65 (81)
125 2yy0_A C-MYC-binding protein; 39.3 50 0.0017 23.0 4.7 26 215-240 20-45 (53)
126 2v4h_A NF-kappa-B essential mo 38.5 1.5E+02 0.0053 23.8 9.1 16 229-244 91-106 (110)
127 1a93_B MAX protein, coiled coi 38.2 29 0.00099 22.7 3.0 25 180-204 4-28 (34)
128 2zxx_A Geminin; coiled-coil, c 37.9 22 0.00075 27.1 2.8 26 179-204 37-62 (79)
129 2jp7_A MRNA export factor MEX6 37.3 30 0.001 24.5 3.3 29 56-84 17-45 (57)
130 1nlw_A MAD protein, MAX dimeri 37.0 91 0.0031 23.1 6.1 8 200-207 40-47 (80)
131 3s9g_A Protein hexim1; cyclin 36.9 1.6E+02 0.0054 23.5 10.4 43 163-205 17-59 (104)
132 3jsv_C NF-kappa-B essential mo 36.7 1.5E+02 0.0052 23.2 8.1 74 162-247 11-87 (94)
133 2akf_A Coronin-1A; coiled coil 36.6 69 0.0024 20.5 4.5 24 221-244 6-29 (32)
134 3mq7_A Bone marrow stromal ant 36.2 1.7E+02 0.0059 23.9 8.1 38 216-253 73-110 (121)
135 3nmd_A CGMP dependent protein 36.0 1.1E+02 0.0038 22.9 6.4 17 218-234 51-67 (72)
136 2peq_A ORF134; helix bundle, p 36.0 74 0.0025 26.3 6.0 29 130-167 49-77 (134)
137 2oo9_A E3 ubiquitin-protein li 35.8 45 0.0015 23.2 3.9 35 48-84 8-42 (46)
138 2qsf_X RAD23, UV excision repa 35.5 44 0.0015 28.5 4.7 36 46-83 132-167 (171)
139 2lbc_A Ubiquitin carboxyl-term 35.2 27 0.00093 27.4 3.1 38 45-84 4-42 (126)
140 3tnu_A Keratin, type I cytoske 34.6 1.7E+02 0.0058 23.1 8.4 12 135-146 12-23 (131)
141 1t6f_A Geminin; coiled-coil, c 34.2 93 0.0032 20.6 5.0 28 220-247 6-33 (37)
142 1deb_A APC protein, adenomatou 33.2 1.3E+02 0.0045 21.4 6.6 41 216-256 12-52 (54)
143 3hhm_B NISH2 P85alpha; PI3KCA, 33.1 1.6E+02 0.0056 27.5 8.6 53 186-238 208-264 (373)
144 3ljc_A ATP-dependent protease 32.8 85 0.0029 26.9 6.2 16 152-167 194-209 (252)
145 2p22_A Suppressor protein STP2 32.6 2.3E+02 0.008 24.1 10.0 56 201-256 36-91 (174)
146 4dk0_A Putative MACA; alpha-ha 32.0 42 0.0014 29.6 4.2 29 215-243 116-144 (369)
147 4b4t_K 26S protease regulatory 31.9 73 0.0025 30.3 6.0 49 184-242 43-91 (428)
148 3hnw_A Uncharacterized protein 30.4 2.2E+02 0.0075 23.1 11.2 72 177-251 62-133 (138)
149 2j5u_A MREC protein; bacterial 30.3 33 0.0011 30.3 3.2 15 181-195 24-38 (255)
150 1oqy_A HHR23A, UV excision rep 30.0 23 0.00079 33.3 2.2 37 45-83 169-205 (368)
151 2apl_A Hypothetical protein PG 29.9 69 0.0024 27.3 4.9 38 147-184 27-64 (157)
152 2l5g_B Putative uncharacterize 29.6 1.3E+02 0.0043 20.5 5.2 29 215-243 10-38 (42)
153 4h22_A Leucine-rich repeat fli 29.3 2.2E+02 0.0074 22.7 10.7 66 165-240 11-77 (103)
154 2dgc_A Protein (GCN4); basic d 29.2 76 0.0026 22.6 4.4 20 184-203 31-50 (63)
155 1ntc_A Protein (nitrogen regul 29.1 9.5 0.00032 28.3 -0.5 26 57-82 50-75 (91)
156 1a5t_A Delta prime, HOLB; zinc 29.0 34 0.0012 30.2 3.1 53 26-84 156-208 (334)
157 2ve7_A Kinetochore protein HEC 28.9 74 0.0025 28.9 5.4 52 148-204 162-213 (315)
158 4e18_B Catenin alpha-1; four h 28.8 84 0.0029 22.8 4.5 47 188-234 8-55 (59)
159 1nkp_A C-MYC, MYC proto-oncoge 28.8 1.3E+02 0.0045 22.5 5.9 29 176-204 52-80 (88)
160 1m1j_C Fibrinogen gamma chain; 28.7 3.3E+02 0.011 26.0 10.0 19 223-241 93-111 (409)
161 2jn6_A Protein CGL2762, transp 28.7 3.2 0.00011 30.4 -3.1 27 181-207 64-90 (97)
162 1nlw_A MAD protein, MAX dimeri 28.1 90 0.0031 23.1 4.8 29 176-204 47-75 (80)
163 1deq_A Fibrinogen (alpha chain 27.9 2.6E+02 0.009 26.9 9.0 25 63-88 54-78 (390)
164 3tnu_B Keratin, type II cytosk 27.8 2.2E+02 0.0076 22.3 9.7 16 192-207 52-67 (129)
165 2juj_A E3 ubiquitin-protein li 27.1 58 0.002 23.5 3.3 40 45-86 8-47 (56)
166 1go4_E MAD1 (mitotic arrest de 27.0 2.3E+02 0.0079 22.3 8.9 22 221-242 75-96 (100)
167 1eto_A FIS, factor for inversi 26.5 19 0.00066 27.5 0.9 26 57-82 57-82 (98)
168 1hlo_A Protein (transcription 26.3 79 0.0027 23.0 4.1 8 200-207 50-57 (80)
169 2oxj_A Hybrid alpha/beta pepti 26.1 1.2E+02 0.004 19.8 4.4 14 189-202 7-20 (34)
170 2qho_B E3 ubiquitin-protein li 25.7 1.8E+02 0.0061 20.6 5.7 38 45-82 10-47 (53)
171 3i00_A HIP-I, huntingtin-inter 25.6 2.6E+02 0.0088 22.4 10.2 22 178-199 17-38 (120)
172 1am9_A Srebp-1A, protein (ster 25.2 1.7E+02 0.0057 21.5 5.8 18 235-252 57-74 (82)
173 1olm_A SEC14-like protein 2; l 25.1 64 0.0022 29.4 4.2 30 55-84 30-59 (403)
174 3hyb_A RBCX protein; rubisco, 25.0 2.3E+02 0.0078 24.1 7.2 29 129-166 67-95 (155)
175 1r5l_A Alpha-TTP, protein (alp 24.9 71 0.0024 26.7 4.2 28 57-84 30-57 (262)
176 3n71_A Histone lysine methyltr 24.4 3.7E+02 0.013 25.4 9.5 109 149-262 365-473 (490)
177 4ath_A MITF, microphthalmia-as 24.1 2.4E+02 0.0082 21.5 7.0 9 200-208 32-40 (83)
178 3q8g_A CRAL-TRIO domain-contai 24.1 1E+02 0.0035 27.6 5.3 38 46-83 41-84 (320)
179 1ytz_I Troponin I; muscle, THI 23.7 69 0.0024 27.8 3.9 33 223-255 57-89 (182)
180 1t2k_D Cyclic-AMP-dependent tr 23.4 1.9E+02 0.0064 20.0 8.9 18 186-203 25-42 (61)
181 3c3f_A Alpha/beta peptide with 23.2 1.4E+02 0.0049 19.4 4.4 12 190-201 8-19 (34)
182 2j69_A Bacterial dynamin-like 22.6 3.6E+02 0.012 26.8 9.3 50 151-205 332-381 (695)
183 2bni_A General control protein 22.2 1.4E+02 0.0049 19.4 4.2 10 191-200 9-18 (34)
184 1sxj_B Activator 1 37 kDa subu 21.7 57 0.0019 27.3 2.9 52 34-87 160-215 (323)
185 3mq7_A Bone marrow stromal ant 21.7 3.3E+02 0.011 22.2 7.9 11 192-202 73-83 (121)
186 2wvr_A Geminin; DNA replicatio 20.9 2.6E+02 0.009 24.7 7.0 29 178-206 117-145 (209)
187 3efg_A Protein SLYX homolog; x 20.6 2E+02 0.0069 21.3 5.4 35 222-256 29-63 (78)
188 2oto_A M protein; helical coil 20.6 3.3E+02 0.011 21.8 12.2 20 184-203 51-70 (155)
189 3cvf_A Homer-3, homer protein 20.4 2.8E+02 0.0096 20.9 7.2 15 181-195 18-32 (79)
190 2chq_A Replication factor C sm 20.4 57 0.002 27.3 2.7 52 34-87 155-210 (319)
191 1aua_A Phosphatidylinositol tr 20.4 93 0.0032 26.9 4.1 40 45-84 31-76 (296)
192 2l3l_A Tubulin-specific chaper 20.3 3.1E+02 0.011 21.4 7.2 36 212-247 56-103 (111)
193 1sxj_E Activator 1 40 kDa subu 20.2 43 0.0015 28.9 1.9 53 34-88 187-244 (354)
194 3brv_B NF-kappa-B essential mo 20.1 2.8E+02 0.0095 20.7 7.7 19 192-210 10-28 (70)
No 1
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=99.06 E-value=2.1e-10 Score=83.69 Aligned_cols=48 Identities=25% Similarity=0.417 Sum_probs=43.6
Q ss_pred cchhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhhhcccccC
Q 024305 44 RSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGSADN 91 (269)
Q Consensus 44 ~~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~sa~~ 91 (269)
.+.-+.+|+.+||+||+++|+.+|++|++|+|.||+.|.++...+...
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSC
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCC
Confidence 367799999999999999999999999999999999999988776543
No 2
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=3.7e-10 Score=84.47 Aligned_cols=45 Identities=27% Similarity=0.544 Sum_probs=42.1
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhhhcccc
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGSA 89 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~sa 89 (269)
+..+++|+.+||+||+++|+.+|++||+|+|+||++|.++...+.
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~~ 63 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESG 63 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCC
Confidence 678999999999999999999999999999999999999987653
No 3
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=97.95 E-value=2.3e-06 Score=61.71 Aligned_cols=40 Identities=23% Similarity=0.476 Sum_probs=31.0
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 84 (269)
...+..|+.+||+||++||+.+|+.++.++|+||.+|.++
T Consensus 13 ~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 13 KDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 4568899999999999999999999999999999998765
No 4
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.70 E-value=3.9e-05 Score=54.10 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=36.2
Q ss_pred hhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhh
Q 024305 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 46 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 84 (269)
+=+..|..+||..+...+..+|+.|++|+|.||..|.+.
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 457899999999999999999999999999999999874
No 5
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.36 E-value=0.0053 Score=46.37 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=37.1
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
.+.+.+++.|||++....|.+.|+.+++|++.+|-.|.+
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 567999999999999999999999999999999999988
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.94 E-value=0.11 Score=40.09 Aligned_cols=69 Identities=28% Similarity=0.346 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 160 RALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (269)
Q Consensus 160 RvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~ 239 (269)
-+|+-||.=|-. +-+.+.-++.|+..||++-..|..||.-++. ..+.+.+|.++||+-...+|++|+.
T Consensus 6 ElleqLE~KIq~--avdtI~lLqmEieELKekN~~L~~e~~e~~~----------~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 6 EVFEKLEAKVQQ--AIDTITLLQMEIEELKEKNNSLSQEVQNAQH----------QREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666665654 3345777899999999999999998877654 2345778899999999999999998
Q ss_pred H
Q 024305 240 L 240 (269)
Q Consensus 240 L 240 (269)
|
T Consensus 74 L 74 (81)
T 2jee_A 74 L 74 (81)
T ss_dssp H
T ss_pred H
Confidence 7
No 7
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=94.74 E-value=0.055 Score=34.73 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=31.7
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHH
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSL 81 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 81 (269)
+..|.+|..+ +.+++...+||..|++|++.||..|
T Consensus 5 ~~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5578999998 8999999999999999999999876
No 8
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.62 E-value=0.099 Score=39.25 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=34.4
Q ss_pred cchhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 44 RSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 44 ~~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
.+..|.+|..| +.+.+.+.+||..|++|++.|+..|..
T Consensus 29 ~ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 29 SEEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CHHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 46789999998 789999999999999999999998876
No 9
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.42 E-value=0.094 Score=39.56 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=32.5
Q ss_pred chhHHHHHhhCCCC-CHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDM-DNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 83 (269)
+.-|.+|..| ++ |.+...+||..+++|++.||..|..
T Consensus 30 e~qi~qL~eM--GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKAL--GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHH--TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4568999988 54 7898999999999999999999986
No 10
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.05 E-value=0.61 Score=37.75 Aligned_cols=69 Identities=22% Similarity=0.202 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024305 185 NKMLKEQVEALIQENMILKRAVSIQHE-RQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQ 253 (269)
Q Consensus 185 n~~LK~ql~~l~~eN~iLKRAv~IQhe-R~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 253 (269)
+.-|+....+|..|.--+|.=+.-++. -.+..-..+.|+.+|+.....|+.+||.||+.|.-|----|-
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 455777777777777777766655432 233444577899999999999999999999999988655443
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.28 E-value=0.93 Score=39.64 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=52.8
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSIQHER-QKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQA 254 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR-~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 254 (269)
..+-+.-|+.++..|..|..-+|.=+..++.- .+.....+.|+..|+....+++.+||.||+.|.-|----|.+
T Consensus 54 ~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~ 128 (189)
T 2v71_A 54 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 128 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34445566667777777777666555444322 334555778999999999999999999999999886655443
No 12
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.12 E-value=0.083 Score=40.23 Aligned_cols=38 Identities=21% Similarity=0.496 Sum_probs=35.8
Q ss_pred hhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 46 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
-+++.|+..||.+...||...+-+.++++|+.|..|..
T Consensus 12 qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~q 49 (75)
T 2dae_A 12 QVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQ 49 (75)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHH
Confidence 46899999999999999999999999999999999976
No 13
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=93.04 E-value=0.15 Score=33.63 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=32.1
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
+..|.+|..+ +.++....+||..|++|++.|+.-|-+
T Consensus 5 e~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 5668888887 678899999999999999999988754
No 14
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=92.95 E-value=0.16 Score=35.35 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=31.8
Q ss_pred hhHHHHHhhCCCC-CHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 46 HLLDQLAAIFPDM-DNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 46 ~~l~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 83 (269)
..|.+|..+ +. |.+...+||..||+|++.||..|..
T Consensus 13 ~~l~~L~~M--GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 13 QQLEQLNSM--GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHTT--TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 347888887 67 8999999999999999999999876
No 15
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=92.63 E-value=0.19 Score=35.02 Aligned_cols=37 Identities=30% Similarity=0.418 Sum_probs=32.7
Q ss_pred chhHHHHHhhCCCC-CHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDM-DNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 83 (269)
+..|.+|..+ +. |.+...+||..||+|++.||..|..
T Consensus 13 ~~~l~~L~~M--GF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 13 QQQLEQLSAM--GFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4568999998 78 9999999999999999999998853
No 16
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.45 E-value=0.36 Score=33.98 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=32.5
Q ss_pred chhHHHHHhhCCCC-CHHHHHHHHHHcCccHHHHHHHHHhh
Q 024305 45 SHLLDQLAAIFPDM-DNQILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 45 ~~~l~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~L 84 (269)
+.-|.+|..+ +. |.+...+||..|++|++.||..|...
T Consensus 10 ~~~l~~L~~M--GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 10 QVQLEQLRSM--GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4468999998 56 67778999999999999999999874
No 17
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.97 E-value=0.6 Score=33.75 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=33.7
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCc-cHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGD-DLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~ 83 (269)
+..|.+|..+ ++++....+||..|+| |++.|+.-|.+
T Consensus 20 e~~i~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 20 GSALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CCHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 5679999998 7888999999999998 99999999876
No 18
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.87 E-value=0.2 Score=34.39 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=33.1
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
+..|.+|..+ +.++....+||..|+||++.|+.-|.+
T Consensus 9 ~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5578889888 789999999999999999999998865
No 19
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=91.41 E-value=0.33 Score=33.11 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=30.8
Q ss_pred chhHHHHHhhCCCC-CHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDM-DNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 83 (269)
+.-|.+|..+ +. |.+...+||..|++|++.||..|..
T Consensus 8 ~~~i~~L~~M--GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 8 EHQLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 3457888887 44 7888899999999999999998853
No 20
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.39 E-value=0.39 Score=34.86 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=37.7
Q ss_pred cchhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhhhc
Q 024305 44 RSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (269)
Q Consensus 44 ~~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 86 (269)
-++.+++++.+||+++...+..=|+..| +++..|..+.+=+|
T Consensus 13 ~~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGrl 54 (58)
T 2ejs_A 13 LNAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGRI 54 (58)
T ss_dssp HHHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcCC
Confidence 3667999999999999999999999999 99999999887554
No 21
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.07 E-value=0.37 Score=34.90 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=33.7
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
+..|.+|..+ +++.....+||..|++|++.|+.-|.+
T Consensus 10 ~~~I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 10 EKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5678999988 789999999999999999999999977
No 22
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=89.86 E-value=0.46 Score=38.11 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=32.4
Q ss_pred hhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 46 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
.-|..|..+ .+++++-...||++|++||..||..|.+
T Consensus 41 ekVk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 41 EKVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 356777777 6889999999999999999999999886
No 23
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=89.84 E-value=0.56 Score=33.59 Aligned_cols=36 Identities=31% Similarity=0.359 Sum_probs=31.2
Q ss_pred hhHHHHHhhCCCC-CHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 46 HLLDQLAAIFPDM-DNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 46 ~~l~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 83 (269)
.-|.+|..+ +. |.+...+||..+++|++.||..|..
T Consensus 19 ~qi~~L~~M--GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 19 HQLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 457889988 44 7888899999999999999999875
No 24
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=89.70 E-value=0.59 Score=34.00 Aligned_cols=38 Identities=13% Similarity=0.322 Sum_probs=33.4
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
.+.+++++.+||+++...+..-|+..| +++..|..+.+
T Consensus 18 ~~Mve~V~~mFPqv~~~~I~~DL~rTg-SVe~TienILe 55 (58)
T 4g3o_A 18 NAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHC-CHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHc
Confidence 456899999999999999999999985 89999987754
No 25
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.73 E-value=0.88 Score=32.47 Aligned_cols=37 Identities=11% Similarity=0.219 Sum_probs=33.7
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
+..|.+|..+ +.++....+||..|+||++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 10 EDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 6778999998 667899999999999999999999987
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.54 E-value=5.1 Score=33.00 Aligned_cols=96 Identities=16% Similarity=0.174 Sum_probs=63.7
Q ss_pred chHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHH-hhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 135 PEWVELFVREMMSS---SNIDDARARASRALEILEKSICAR-ASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQH 210 (269)
Q Consensus 135 ~eWVEl~V~EM~~A---sd~dDAraRAsRvLEafEksi~~r-a~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQh 210 (269)
+..|+-=++||... ..+++-| .+|.+. .-++.--.+++++..|..+++.+.+|..-||-=+.--.
T Consensus 34 A~~vd~km~ei~~~~~~~~l~~~r-----------~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~ 102 (138)
T 3hnw_A 34 ASYINNKITEFNKEESYRRMSAEL-----------RTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQ 102 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCCHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777754 3333333 233332 23444556777888899999999888888886433222
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024305 211 ERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNN 244 (269)
Q Consensus 211 eR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~N 244 (269)
-.++...+|+..|+.-+...|+++..||...
T Consensus 103 ---~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 103 ---IKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455677888888888888888888888643
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.49 E-value=12 Score=35.35 Aligned_cols=75 Identities=21% Similarity=0.205 Sum_probs=54.5
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEH 256 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 256 (269)
+.+.++...+++..+.+.+++..+++++. +.+++|+...+|+..+++.+...++++..|.+.|-.++--+++-++
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEAD---AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhh---hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666666666652 3446667677888899999999999999999999998877777665
No 28
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.45 E-value=0.66 Score=33.99 Aligned_cols=41 Identities=22% Similarity=0.390 Sum_probs=37.6
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhhhc
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 86 (269)
.+.+++++.+||++....+..=|+..| +++..|..+.+=++
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr~ 54 (61)
T 2ekf_A 14 ATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLEGAV 54 (61)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHcCCC
Confidence 667999999999999999999999999 99999999887665
No 29
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=87.85 E-value=0.85 Score=35.06 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=34.9
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
+..|.+|..| ++++..+.+||..|++|++-|+.-|..
T Consensus 30 ee~I~~Lv~M--GF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 30 QESINQLVYM--GFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 6789999999 789999999999999999999999987
No 30
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=87.79 E-value=0.35 Score=35.65 Aligned_cols=41 Identities=29% Similarity=0.271 Sum_probs=31.9
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhhhc
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 86 (269)
...|..||... +..-.--.+||++|++||+.||.-|..--+
T Consensus 10 ~~~Vk~LRe~T-Gag~~dcKkAL~e~~GDi~~Ai~~Lr~kg~ 50 (64)
T 2cp9_A 10 KELLMKLRRKT-GYSFVNCKKALETCGGDLKQAEIWLHKEAQ 50 (64)
T ss_dssp CHHHHHHHHHH-CCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHHHHHhH
Confidence 46788888873 344444779999999999999999987443
No 31
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=86.75 E-value=1.5 Score=31.76 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=34.1
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCc-cHHHHHHHHHhh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGD-DLDSAIRSLNEL 84 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~L 84 (269)
+..|.+|..+ ++++....+||..||| |++.|+.-|.+.
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 10 PSLLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp CSSHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 5678999997 7888999999999999 999999999873
No 32
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.70 E-value=1.1 Score=33.27 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=34.3
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCc-cHHHHHHHHHhh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGD-DLDSAIRSLNEL 84 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~L 84 (269)
+..|.+|..+ +++.....+||..||| |++.|+.-|.+.
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 10 ESVIIQLVEM--GFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 6789999998 7788999999999997 899999999884
No 33
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=85.92 E-value=1.4 Score=32.70 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=33.8
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
+..|.+|..+ +.+.....+||..|+||++.|+.-|.+
T Consensus 30 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 30 QSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 6778999998 678999999999999999999999876
No 34
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=84.97 E-value=7.7 Score=37.31 Aligned_cols=97 Identities=10% Similarity=0.222 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhh------HHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024305 163 EILEKSICARAS------AEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQ 236 (269)
Q Consensus 163 EafEksi~~ra~------ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEq 236 (269)
|.+.+++..|-. -+..-.+-++-..++.+++.|..+.+.+-+.+..--....+.+..-.|+.+||.-+...+++
T Consensus 12 ~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (455)
T 2dq0_A 12 ELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENE 91 (455)
T ss_dssp HHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555532 23334455566666777777777766666665531111123333445555555555555555
Q ss_pred HHHHHhhhHHHHHHHHHHhhcCCCCCCCCCCC
Q 024305 237 LRTLEVNNYALTMHLKQAEHSNSIPGRFHPDV 268 (269)
Q Consensus 237 ir~LE~~NYaL~~HL~qA~~~~~~~g~~~PDV 268 (269)
++.+|..-+.+-+ .+|-.-||||
T Consensus 92 ~~~~~~~~~~~~~---------~ipN~~~~~v 114 (455)
T 2dq0_A 92 VEELKKKIDYYLW---------RLPNITHPSV 114 (455)
T ss_dssp HHHHHHHHHHHHT---------TSCCCCCTTS
T ss_pred HHHHHHHHHHHHH---------hCCCCCCccC
Confidence 5555544333322 3465566665
No 35
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=84.87 E-value=2.4 Score=30.50 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=33.1
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHc-CccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEEC-GDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~c-gndlDaAIksL~~ 83 (269)
+..|.+|..+ +++.....+||..| ++|++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 10 LTALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp CCHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 5678999998 67789999999999 4899999999987
No 36
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=84.16 E-value=1.6 Score=33.35 Aligned_cols=41 Identities=27% Similarity=0.402 Sum_probs=35.4
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhhhcc
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLG 87 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~ 87 (269)
+..|.+|..+ +++++..++||..|++|++.|+.-|.+...+
T Consensus 22 ~~~I~qL~~M--GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 22 SRLIKQLTDM--GFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 5678999998 7788999999999999999999999885443
No 37
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=82.98 E-value=5.7 Score=37.71 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhh---HHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 163 EILEKSICARAS---AEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (269)
Q Consensus 163 EafEksi~~ra~---ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~ 239 (269)
+.+.+++..|-. -+..-.+-++...++.+++.|..+.+.+-+.+.. +.+ .+.+.|+.-+.+..++|+.
T Consensus 12 ~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~---~~~------~~~~~l~~~~~~~~~~~~~ 82 (421)
T 1ses_A 12 EVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPK---APP------EEKEALIARGKALGEEAKR 82 (421)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---SCH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcc------ccHHHHHHHHHHHHHHHHH
Confidence 455555555532 3445556667778888888888888877777664 221 1233444444455555555
Q ss_pred HHhhhHHHHHHHHHHhhcCCCCCCCCCCC
Q 024305 240 LEVNNYALTMHLKQAEHSNSIPGRFHPDV 268 (269)
Q Consensus 240 LE~~NYaL~~HL~qA~~~~~~~g~~~PDV 268 (269)
||..-+.+.--|.... ..+|-.-||||
T Consensus 83 ~~~~~~~~~~~~~~~~--~~ipN~~~~~v 109 (421)
T 1ses_A 83 LEEALREKEARLEALL--LQVPLPPWPGA 109 (421)
T ss_dssp HHHHHHHHHHHHHHHH--TTCCCCCCTTS
T ss_pred HHHHHHHHHHHHHHHH--HhCCCCCCCCC
Confidence 5555555555553322 23565566665
No 38
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.69 E-value=1.8 Score=28.96 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=30.8
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
+..|.+|..+ +.++....+||..|| |++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMDM--GFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHH--HCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 6778999998 566788999999997 89999998864
No 39
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.56 E-value=2.2 Score=32.42 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=34.8
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 84 (269)
+..|.+|..+ +++.....+||..|++|++.|+.-|.+.
T Consensus 30 e~~i~~L~~M--GF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 30 EAALRQLTEM--GFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 6789999998 7888999999999999999999999873
No 40
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=82.39 E-value=14 Score=36.28 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=32.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024305 184 ENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYAL 247 (269)
Q Consensus 184 En~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL 247 (269)
+-..++.+++.|..+.+.+-+.+..--....+.++.-.|+.+||.-+...+++++.+|..-+.+
T Consensus 41 ~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 41 EWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443332111122344555667777777777777777776655444
No 41
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=80.84 E-value=24 Score=34.47 Aligned_cols=66 Identities=21% Similarity=0.239 Sum_probs=31.7
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024305 180 SFHQENKMLKEQVEALIQENMILKRAVSIQHERQ---------KEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYA 246 (269)
Q Consensus 180 ~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~---------~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYa 246 (269)
.+.++...++.+++.|..+.+.+-+.+..-- +. .+.+..-.|+.+||.-+...+++++.+|..-+.
T Consensus 74 ~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 74 STWQELRQLREQIRSLEEEKEAVTEAVRALV-VNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544444211 11 123334455555555555555555555554443
No 42
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=80.79 E-value=30 Score=36.74 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=22.6
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024305 177 AAQSFHQENKMLKEQVEALIQENMILKRAV 206 (269)
Q Consensus 177 ~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv 206 (269)
.+.++++|+..|+++++.+.+|+..|+...
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888888888888876653
No 43
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=80.67 E-value=1.6 Score=32.28 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=30.7
Q ss_pred hHHHHHhh-CCCCCHHHHHHHHHHcCccHHHHHHHHHhh
Q 024305 47 LLDQLAAI-FPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 47 ~l~~L~~l-FP~md~q~le~aLe~cgndlDaAIksL~~L 84 (269)
-|.+|+.+ | .|.+...+||.+|++|++.||..|...
T Consensus 22 ql~qL~~MGF--~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 22 EMECLQAMGF--VNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHcCC--CcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 47777776 3 578888999999999999999999883
No 44
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=80.20 E-value=2.9 Score=30.09 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=10.9
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 024305 184 ENKMLKEQVEALIQENMILK 203 (269)
Q Consensus 184 En~~LK~ql~~l~~eN~iLK 203 (269)
+...|..+++.|..+|.-|+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~ 43 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALK 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554
No 45
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=79.85 E-value=3.9 Score=31.54 Aligned_cols=38 Identities=34% Similarity=0.418 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024305 188 LKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQE 235 (269)
Q Consensus 188 LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqE 235 (269)
+...+..|..||..|+.=|. ....|++.|++++.|..+
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~----------~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVE----------QLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHCcH
Confidence 34444455555555543322 133455555555555444
No 46
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=78.72 E-value=6.3 Score=27.00 Aligned_cols=35 Identities=37% Similarity=0.462 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024305 215 EYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLK 252 (269)
Q Consensus 215 e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 252 (269)
|+|.+..+++ ...++..|+|.||+..|+-|+--|+
T Consensus 7 eLE~r~k~le---~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 7 ELENRVKDLE---NKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 4555544444 4788889999999999999987664
No 47
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=78.69 E-value=0.83 Score=31.13 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=30.9
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
...|..|..+ +.++..+.+||.+||+|.+.|...|-.
T Consensus 5 ~eaI~rL~~m--GF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 5 KEAIERLKAL--GFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHHHTTTTTT--TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3456777777 788999999999999999999887754
No 48
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=78.64 E-value=3.4 Score=27.53 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024305 221 QELHHLKQLVSQYQEQLRTLEVNNYALTMHLK 252 (269)
Q Consensus 221 ~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 252 (269)
.+++.|..-++-|=++||.||+.|-.|...++
T Consensus 6 e~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 6 VELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888899999999999999999877653
No 49
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=76.64 E-value=3.6 Score=32.63 Aligned_cols=37 Identities=11% Similarity=0.248 Sum_probs=33.9
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
+..|.+|..+ +.+.....+||..||||++.|+.-|..
T Consensus 79 e~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 79 EEIVAIITSM--GFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp HHHHHHHHHH--TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 6789999998 778999999999999999999999976
No 50
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=76.07 E-value=7.2 Score=29.84 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=30.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024305 212 RQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAE 255 (269)
Q Consensus 212 R~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 255 (269)
|.+.+.+.-.|..+|.+-+.+.++.|.+|+..|--|.--+.+++
T Consensus 25 RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 25 RRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677777777777777777777777776665555544
No 51
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=75.21 E-value=5.4 Score=30.60 Aligned_cols=40 Identities=33% Similarity=0.402 Sum_probs=37.3
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 84 (269)
..+|.+|+.|-=--|+++|..||.++..||..|+--|.+=
T Consensus 25 q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 25 QTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 4589999999999999999999999999999999999873
No 52
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=73.11 E-value=18 Score=26.06 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024305 188 LKEQVEALIQENMILKRAVSI 208 (269)
Q Consensus 188 LK~ql~~l~~eN~iLKRAv~I 208 (269)
||-|+..|.+||.-||+++--
T Consensus 15 LkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888888877753
No 53
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=73.01 E-value=8.4 Score=29.67 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=25.8
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 024305 178 AQSFHQENKMLKEQVEALIQENMILKRAVS 207 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~ 207 (269)
+..|.+||..|+.+++.|..|...||..|.
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445899999999999999999999987764
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.92 E-value=32 Score=32.45 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=16.8
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKE 215 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e 215 (269)
++++...++++++.+.+|+.-|++-+..+-++..+
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 562 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAE 562 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHH
Confidence 33334444455555555555555555544444433
No 55
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=72.88 E-value=7.2 Score=28.91 Aligned_cols=40 Identities=33% Similarity=0.363 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHH
Q 024305 162 LEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILK 203 (269)
Q Consensus 162 LEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLK 203 (269)
+.-||.-|..--. ....+..||..|+.++..|..||..||
T Consensus 31 i~~LE~~v~~le~--~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 31 LKALETQVVTLKE--LHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4445554443211 123366777778888877777777665
No 56
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=72.24 E-value=4.6 Score=30.53 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=15.6
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHH
Q 024305 180 SFHQENKMLKEQVEALIQENMILKR 204 (269)
Q Consensus 180 ~~~kEn~~LK~ql~~l~~eN~iLKR 204 (269)
.|.+||..|+.+++.|..|...||.
T Consensus 47 ~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 47 ELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666666666666654
No 57
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=72.11 E-value=23 Score=25.27 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=21.9
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024305 178 AQSFHQENKMLKEQVEALIQENMILKRAV 206 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l~~eN~iLKRAv 206 (269)
.+.+.+||..|+.++..|..|+..||.-+
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788888888888888888777654
No 58
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=69.89 E-value=5.8 Score=37.67 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=35.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTM 249 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~ 249 (269)
+-++...++.+++.|..+.+.+-+.+..--....+.+..-.|+..||.-+...+++++.+|..-+.+-+
T Consensus 35 ~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 2dq3_A 35 LDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLL 103 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555544443200001233334456677777666666666666665554443
No 59
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=69.10 E-value=4.6 Score=32.31 Aligned_cols=38 Identities=26% Similarity=0.332 Sum_probs=31.1
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
+.-|.+|+.+= -.|.+...+||..|+.|++.||..|..
T Consensus 67 ~~qL~qL~eMG-F~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 67 QPQLQQLRDMG-IQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHHHHHTTT-CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45678888761 146788999999999999999999976
No 60
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=68.08 E-value=9.3 Score=24.84 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=31.2
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
..+|.++..+ -+.++..-...|+.|+.||+.||..+.+
T Consensus 6 ~~~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 6 QDALREFVAV-TGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3456777765 5679999999999999999999987754
No 61
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=67.10 E-value=40 Score=25.71 Aligned_cols=32 Identities=28% Similarity=0.207 Sum_probs=21.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024305 212 RQKEYEDRSQELHHLKQLVSQYQEQLRTLEVN 243 (269)
Q Consensus 212 R~~e~e~~~~El~~Lkql~~qyqEqir~LE~~ 243 (269)
-..|++....|+..+++.....+++|+.||..
T Consensus 42 Lt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 42 LTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477778889999999999999999988863
No 62
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=66.66 E-value=12 Score=27.47 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 200 MILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLR 238 (269)
Q Consensus 200 ~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir 238 (269)
.||+.|+..=..-+.+.+....|+..|++-..+.+.+|.
T Consensus 40 ~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 40 QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777653332333333333334444443333333333
No 63
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=66.15 E-value=8 Score=29.77 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 024305 222 ELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEH 256 (269)
Q Consensus 222 El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 256 (269)
+++.|.--++-|=++||.||+.|-.|...+++-++
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47888888999999999999999999888766553
No 64
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=66.13 E-value=11 Score=28.56 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=33.8
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcC-ccHHHHHHHHHhh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECG-DDLDSAIRSLNEL 84 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cg-ndlDaAIksL~~L 84 (269)
+..|.+|..+ +++.....+||..++ +|++.|+.-|.+.
T Consensus 30 e~~v~~L~~M--GF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 30 EEIVAQLVSM--GFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 6789999998 788899999999997 4999999999873
No 65
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=66.00 E-value=8 Score=27.14 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=23.3
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHHHHHH
Q 024305 177 AAQSFHQENKMLKEQVEALIQENMILKR 204 (269)
Q Consensus 177 ~~~~~~kEn~~LK~ql~~l~~eN~iLKR 204 (269)
....++.||..||.+++.|..++.-||+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999888888888876
No 66
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=65.03 E-value=5.9 Score=31.79 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=29.1
Q ss_pred hHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 47 LLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 47 ~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
.|.+|..+ +.+...+.+||..|+||+|.|+.-|-.
T Consensus 79 ~v~~L~eM--GF~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 79 LMSKFKEM--GFELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35666665 578899999999999999999998754
No 67
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=61.83 E-value=69 Score=26.64 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024305 155 RARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQ 234 (269)
Q Consensus 155 raRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyq 234 (269)
|..+.++++.||.++.- +..-|..|..+++.=.+=...|..+...|.+. +.+.+..+..|+
T Consensus 67 k~~~e~l~~~veeA~~~---------L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~----------l~e~e~~leeyK 127 (152)
T 4fla_A 67 KEAAERLSKTVDEACLL---------LAEYNGRLAAELEDRRQLARMLVEYTQNQKDV----------LSEKEKKLEEYK 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 56677777777776554 33344444444433333334455554444433 333334455555
Q ss_pred HHHHHHHhhhHHHHHHH
Q 024305 235 EQLRTLEVNNYALTMHL 251 (269)
Q Consensus 235 Eqir~LE~~NYaL~~HL 251 (269)
+++.++..-.==|.-|+
T Consensus 128 ~Kl~rv~~vkkeL~~hi 144 (152)
T 4fla_A 128 QKLARVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55555444444444444
No 68
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=61.34 E-value=4.7 Score=35.38 Aligned_cols=27 Identities=37% Similarity=0.417 Sum_probs=22.6
Q ss_pred HHHHHHHcCccHHHHHHHHHhhhcccc
Q 024305 63 LDRALEECGDDLDSAIRSLNELRLGSA 89 (269)
Q Consensus 63 le~aLe~cgndlDaAIksL~~L~L~sa 89 (269)
-.+||++|++|+|.||.-|..--+..+
T Consensus 21 CKkAL~e~~GD~ekAie~LR~kG~akA 47 (196)
T 1aip_C 21 VKRALEDAGWDEEKAVQLLRERGAMKA 47 (196)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCchh
Confidence 469999999999999999998555444
No 69
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=60.75 E-value=46 Score=35.40 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHHcCccHH
Q 024305 58 MDNQILDRALEECGDDLD 75 (269)
Q Consensus 58 md~q~le~aLe~cgndlD 75 (269)
+|..+|-.=|.-|| .|+
T Consensus 673 fd~~~V~~QLr~~G-vlE 689 (1080)
T 2dfs_A 673 FDEKRAVQQLRACG-VLE 689 (1080)
T ss_dssp CCHHHHHHHHHTTT-HHH
T ss_pred cCHHhhHHHHhhcc-cHH
Confidence 56666666666666 443
No 70
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=59.10 E-value=1.1e+02 Score=29.97 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCCCCCCC
Q 024305 230 VSQYQEQLRTLEVNNYALTMHLKQAEHSNSIPGRFHPDV 268 (269)
Q Consensus 230 ~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g~~~PDV 268 (269)
+.+-.++|+.||..-..+.-.|... -..+|-.-||||
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~--l~~iPN~~~~~v 149 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL--MLNVGNILHESV 149 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HTTCCCCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCCCCccC
Confidence 3444444555544444444444322 223455556655
No 71
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=58.42 E-value=38 Score=26.13 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=12.9
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILK 203 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLK 203 (269)
..-=+||+-|.++++.+..|+..||
T Consensus 42 ~eaL~EN~~Lh~~ie~l~eEi~~lk 66 (83)
T 1uii_A 42 YEALKENEKLHKEIEQKDNEIARLK 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455555555555555554444
No 72
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=57.95 E-value=85 Score=33.29 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=7.3
Q ss_pred CCHHHHHHHHHHcC
Q 024305 58 MDNQILDRALEECG 71 (269)
Q Consensus 58 md~q~le~aLe~cg 71 (269)
+|..+|-.=|.-||
T Consensus 695 fd~~~V~~QLr~~G 708 (1184)
T 1i84_S 695 LDAHLVLEQLRCNG 708 (1184)
T ss_dssp CCHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhhcC
Confidence 45555555555555
No 73
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=57.88 E-value=5.6 Score=36.57 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=19.6
Q ss_pred HHHHHHHcCccHHHHHHHHHh
Q 024305 63 LDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 63 le~aLe~cgndlDaAIksL~~ 83 (269)
-.+||++|++|+|.||+-|..
T Consensus 22 CKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 22 CKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 569999999999999999986
No 74
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=57.74 E-value=19 Score=25.51 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024305 184 ENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLV 230 (269)
Q Consensus 184 En~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~ 230 (269)
....|..+++.|..+|.-|+.-| .....|+.+|++++
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei----------~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEI----------ANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 44556666666666776666533 22445566666655
No 75
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=57.13 E-value=6.7 Score=34.84 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=11.2
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 024305 211 ERQKEYEDRSQELHHLKQLV 230 (269)
Q Consensus 211 eR~~e~e~~~~El~~Lkql~ 230 (269)
.++.+++...+|+++||+++
T Consensus 40 ~~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 40 QLESEVADLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444445556667766654
No 76
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=57.04 E-value=8.3 Score=28.46 Aligned_cols=36 Identities=11% Similarity=0.308 Sum_probs=29.5
Q ss_pred hhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 46 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
..|+.|-.+ +...+...+||.+|||||+.|..-|-.
T Consensus 21 e~V~~LvsM--GFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 21 QCVETVVNM--GYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHH--HCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 346666665 467888999999999999999998876
No 77
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=57.02 E-value=13 Score=28.03 Aligned_cols=39 Identities=33% Similarity=0.379 Sum_probs=27.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024305 184 ENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQ 232 (269)
Q Consensus 184 En~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~q 232 (269)
-...++..+..|..||..|+.=|. ....|+..||+++.|
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~----------~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVE----------QLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 344567788889999998886443 355678888877654
No 78
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=56.85 E-value=34 Score=26.42 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=14.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024305 213 QKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYA 246 (269)
Q Consensus 213 ~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYa 246 (269)
++.+++.-+|..+|.+.+.+-++.|.+|...|--
T Consensus 30 r~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~ 63 (83)
T 1wlq_A 30 RKALYEALKENEKLHKEIEQKDSEIARLRKENKD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444433
No 79
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=56.76 E-value=72 Score=32.05 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH
Q 024305 221 QELHHLKQLVSQYQEQLRTLEVNNY 245 (269)
Q Consensus 221 ~El~~Lkql~~qyqEqir~LE~~NY 245 (269)
+.++.|+..|..--.+|++||+..-
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667777777777776543
No 80
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=56.20 E-value=14 Score=26.17 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHcCccHHHHHHHHHhhhc
Q 024305 56 PDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (269)
Q Consensus 56 P~md~q~le~aLe~cgndlDaAIksL~~L~L 86 (269)
=+|-.+-=++.|+++|=|++.|++.+.+|.-
T Consensus 18 Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~ 48 (59)
T 1oai_A 18 SGMNLEWSQKCLQDNNWDYTRSAQAFTHLKA 48 (59)
T ss_dssp HCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4788899999999999999999999999864
No 81
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=55.73 E-value=16 Score=23.89 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024305 222 ELHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 222 El~~Lkql~~qyqEqir~LE 241 (269)
++.+||.--...++|||+||
T Consensus 15 DIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 15 DIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHhcC
Confidence 34444444444455555554
No 82
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=55.37 E-value=32 Score=28.94 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=22.4
Q ss_pred cCCCCcchHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 024305 129 VFQLDGPEWVELFVREMMSSSNIDDARARASRALEILEK 167 (269)
Q Consensus 129 ~~p~~g~eWVEl~V~EM~~Asd~dDAraRAsRvLEafEk 167 (269)
+-+.||..|++.|++| + +.=|.||+++=|-
T Consensus 48 npl~DGd~fL~~Lmre-----~----~~LAlRIMeVR~~ 77 (147)
T 2py8_A 48 HSIQNGETFLTELLDE-----N----KELVLRILAVRED 77 (147)
T ss_dssp SCCSSHHHHHHHHHTT-----C----HHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHhh-----C----HHHHHHHHHHHHH
Confidence 3457999999999998 2 3448888886443
No 83
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=55.26 E-value=50 Score=22.95 Aligned_cols=41 Identities=24% Similarity=0.555 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 185 NKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 185 n~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~ 242 (269)
|.-|+..+.+|.++|--| +| .-|.|..+++.....|-+||-
T Consensus 5 naylrkkiarlkkdnlql--------er---------deqnlekiianlrdeiarlen 45 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQL--------ER---------DEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhh--------hh---------hHhhHHHHHHHHHHHHHHHHH
Confidence 556888888888887543 33 134566788888888888874
No 84
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=55.20 E-value=1.7e+02 Score=29.04 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024305 156 ARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQE 235 (269)
Q Consensus 156 aRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqE 235 (269)
..=+.+-+++|+.+.+ .+.+|+.+|...+++.+.|.-.|-...-- ++.-+++|...++-++.|+.
T Consensus 23 kana~aka~Ye~~~ae---------~~a~n~~i~aeNeaikkrNa~aka~Ye~~------l~kY~~dlakY~~~~AeY~~ 87 (497)
T 3iox_A 23 KANADAKAAYEAAVAA---------NNAANAALTAENTAIKKRNADAKADYEAK------LAKYQADLAKYQKDLADYPV 87 (497)
T ss_dssp HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 3334455666666655 33445555555555555555544433221 11123344444444555555
Q ss_pred HHHHHH
Q 024305 236 QLRTLE 241 (269)
Q Consensus 236 qir~LE 241 (269)
++.+-|
T Consensus 88 kl~aYe 93 (497)
T 3iox_A 88 KLKAYE 93 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 85
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.81 E-value=23 Score=25.03 Aligned_cols=38 Identities=21% Similarity=0.451 Sum_probs=32.7
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
..+|.++..+ -+.++..-..+|+.++.||+.||..+.+
T Consensus 16 ~e~i~qF~~i-Tg~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 16 KGLIQQFTTI-TGASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4567888776 5788999999999999999999988765
No 86
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=54.72 E-value=98 Score=26.18 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=23.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024305 212 RQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYAL 247 (269)
Q Consensus 212 R~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL 247 (269)
+.+..+..+-|+..|+--+..-+++++.|+..|--|
T Consensus 94 K~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 94 KNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555677777777777777888888755333
No 87
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=53.82 E-value=28 Score=22.24 Aligned_cols=24 Identities=38% Similarity=0.389 Sum_probs=14.1
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKR 204 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKR 204 (269)
+++|...||..+..|.-|..-||.
T Consensus 7 lkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555666666666666555555554
No 88
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=53.22 E-value=37 Score=30.18 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=15.2
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHH
Q 024305 178 AQSFHQENKMLKEQVEALIQENMILK 203 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l~~eN~iLK 203 (269)
-..-=+||+-|.++++.+-.|+..||
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~Lk 135 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLK 135 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444466666666666666665555
No 89
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=52.80 E-value=32 Score=26.52 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=14.7
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHH
Q 024305 180 SFHQENKMLKEQVEALIQENMILKR 204 (269)
Q Consensus 180 ~~~kEn~~LK~ql~~l~~eN~iLKR 204 (269)
.||+++..|++.+..|..+|.-||.
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666655554
No 90
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=51.77 E-value=15 Score=29.41 Aligned_cols=38 Identities=11% Similarity=0.266 Sum_probs=32.3
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 84 (269)
..+|.+|..+ +.....+.+||.+||||.+.|+.-|...
T Consensus 9 ~~~v~~l~~M--GFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 9 RQCVETVVNM--GYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 3567888776 5567889999999999999999999885
No 91
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=51.48 E-value=20 Score=25.49 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=34.3
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhhhc
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 86 (269)
++-|++|-.+ +.|++-+.+||..++||+|-|.--|.+..+
T Consensus 12 ~~~Ia~Lm~m--GFsr~~ai~AL~~a~nnve~AaniLlef~~ 51 (52)
T 2ooa_A 12 DAKIAKLMGE--GYAFEEVKRALEIAQNNVEVARSILREFAF 51 (52)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHhcC
Confidence 5668888877 789999999999999999999998887643
No 92
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=51.47 E-value=13 Score=26.52 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=30.7
Q ss_pred hHHHHHhh-CCCCCHHHHHHHHHHcCccHHHHHHHHHhhh
Q 024305 47 LLDQLAAI-FPDMDNQILDRALEECGDDLDSAIRSLNELR 85 (269)
Q Consensus 47 ~l~~L~~l-FP~md~q~le~aLe~cgndlDaAIksL~~L~ 85 (269)
.+.+|..+ | .|.+.-.++|..+|.||+.||..|..+.
T Consensus 12 ~L~~L~eMGF--~D~~~N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 12 LMAHLFEMGF--CDRQLNLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred HHHHHHHcCC--CcHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 56777766 3 3888999999999999999999998753
No 93
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=51.05 E-value=58 Score=28.51 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=22.1
Q ss_pred HHHHHHHH--hhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 165 LEKSICAR--ASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQH 210 (269)
Q Consensus 165 fEksi~~r--a~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQh 210 (269)
|-++|-++ .+.-.+++++.||.+|.+|++....|+.-||+=++-..
T Consensus 7 YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 7 YKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443 33334567778888888888766555555555443333
No 94
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=50.45 E-value=84 Score=27.31 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024305 219 RSQELHHLKQLVSQYQEQLR 238 (269)
Q Consensus 219 ~~~El~~Lkql~~qyqEqir 238 (269)
...++..+++.+..|++++.
T Consensus 65 ~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 65 NEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566666667777776664
No 95
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=50.15 E-value=13 Score=29.32 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=26.1
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHH
Q 024305 48 LDQLAAIFPDMDNQILDRALEECGDDLDSAIRSL 81 (269)
Q Consensus 48 l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 81 (269)
++-+..- .+.+..-..+||++|++||=.||..|
T Consensus 69 i~lv~~q-~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 69 IELVMNQ-TGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 4555555 37777788999999999999999876
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.11 E-value=87 Score=29.00 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024305 219 RSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQA 254 (269)
Q Consensus 219 ~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 254 (269)
.+.|...+++....+|+++..|+..|--|..-+.+.
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 444555667889999999999999888877666544
No 97
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=49.01 E-value=42 Score=26.23 Aligned_cols=15 Identities=20% Similarity=0.640 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhh
Q 024305 229 LVSQYQEQLRTLEVN 243 (269)
Q Consensus 229 l~~qyqEqir~LE~~ 243 (269)
+-.+|+|.|.+|-..
T Consensus 69 mKq~YEeEI~rLr~e 83 (92)
T 3vp9_A 69 MKDAYEEEIKHLKLG 83 (92)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356888888887654
No 98
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=48.98 E-value=87 Score=24.68 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=10.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHh
Q 024305 235 EQLRTLEVNNYALTMHLKQAE 255 (269)
Q Consensus 235 Eqir~LE~~NYaL~~HL~qA~ 255 (269)
+.|..|..-++.|+.+++.-+
T Consensus 75 ~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444445555555554433
No 99
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=48.67 E-value=67 Score=28.10 Aligned_cols=47 Identities=19% Similarity=0.358 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 192 VEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 192 l~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE 241 (269)
+..|..||..|..-+. .|..|.+....+++.||.-...++.++...+
T Consensus 22 V~~L~~En~~L~~ql~---~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~ 68 (190)
T 4emc_A 22 VANLVNENFVLSEKLD---TKATEIKQLQKQIDSLNAQVKELKTQTSQQA 68 (190)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 4678888888877665 3555555566667777777777777665433
No 100
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.55 E-value=27 Score=25.17 Aligned_cols=39 Identities=13% Similarity=0.080 Sum_probs=33.6
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
..+|.++..+=---|+..-..+|+.++-||+.||-.+.+
T Consensus 19 ~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 457888888765478999999999999999999998876
No 101
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=48.06 E-value=1e+02 Score=24.52 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 024305 222 ELHHLKQLVSQYQEQLRTLEVN 243 (269)
Q Consensus 222 El~~Lkql~~qyqEqir~LE~~ 243 (269)
++..+..-+..+++++..++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~ 98 (284)
T 1c1g_A 77 KATDAEADVASLNRRIQLFEEE 98 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 102
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=47.84 E-value=1e+02 Score=24.50 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024305 218 DRSQELHHLKQLVSQYQEQLRTLEVNNYA 246 (269)
Q Consensus 218 ~~~~El~~Lkql~~qyqEqir~LE~~NYa 246 (269)
....++..++.-+..+...+..++..--.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (284)
T 1c1g_A 80 DAEADVASLNRRIQLFEEELDRAQERLAT 108 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555544333
No 103
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=53.38 E-value=3.9 Score=33.94 Aligned_cols=44 Identities=30% Similarity=0.376 Sum_probs=38.1
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhhhccc
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGS 88 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~s 88 (269)
..+|-+|+.|==-=|+++|..||.+|..||--|+--|++=+...
T Consensus 19 Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~~ 62 (129)
T 2lva_A 19 QMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKE 62 (129)
Confidence 45789999998888999999999999999999999998854433
No 104
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.53 E-value=23 Score=25.60 Aligned_cols=37 Identities=8% Similarity=0.181 Sum_probs=32.0
Q ss_pred hhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 46 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
.++.++..+ -+-++..-..+|+.++.||+.||..+.+
T Consensus 19 ~~i~qF~~i-Tg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLA-AGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHH-HCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 567777766 6789999999999999999999998865
No 105
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=46.98 E-value=75 Score=26.14 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=23.4
Q ss_pred cCCCCcchHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 024305 129 VFQLDGPEWVELFVREMMSSSNIDDARARASRALEILE 166 (269)
Q Consensus 129 ~~p~~g~eWVEl~V~EM~~Asd~dDAraRAsRvLEafE 166 (269)
+.+.||..|++.|++| + +.=|.|||++=|
T Consensus 48 ~~~~DGe~fl~~L~~E-----~----~~LA~RIM~vR~ 76 (126)
T 3ka1_A 48 ESIQDGERYLEALFRE-----Q----PDLGFRILTVRE 76 (126)
T ss_dssp HCSSCHHHHHHHHHHH-----C----HHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHhh-----C----HHHHHHHHHHHH
Confidence 4578999999999999 1 567899997644
No 106
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=46.63 E-value=11 Score=28.71 Aligned_cols=17 Identities=41% Similarity=0.737 Sum_probs=8.8
Q ss_pred HHhHHHHHHHHHHHHHH
Q 024305 183 QENKMLKEQVEALIQEN 199 (269)
Q Consensus 183 kEn~~LK~ql~~l~~eN 199 (269)
+|...||++|..|...|
T Consensus 15 EEVevLKe~I~EL~e~~ 31 (78)
T 1dip_A 15 EEVEILKEQIRELVEKN 31 (78)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555554433
No 107
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=46.02 E-value=6.2 Score=27.33 Aligned_cols=26 Identities=15% Similarity=0.383 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHcCccHHHHHHHHH
Q 024305 57 DMDNQILDRALEECGDDLDSAIRSLN 82 (269)
Q Consensus 57 ~md~q~le~aLe~cgndlDaAIksL~ 82 (269)
.+..++|..+|+.||.++..|.+.|.
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LG 43 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIG 43 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 45788999999999999998888763
No 108
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=45.19 E-value=25 Score=31.92 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024305 222 ELHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 222 El~~Lkql~~qyqEqir~LE 241 (269)
+++++++-+.+++++|.+|-
T Consensus 76 ~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 76 TLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45556666666666666653
No 109
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=45.11 E-value=28 Score=24.79 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=33.2
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 84 (269)
++-+.+|-.+ +.|++-+.+||..++||+|.|.--|.+.
T Consensus 10 e~~I~~L~~l--GF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 10 SSEIERLMSQ--GYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 5568888887 7899999999999999999999888774
No 110
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=45.08 E-value=23 Score=22.68 Aligned_cols=21 Identities=38% Similarity=0.358 Sum_probs=15.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 024305 184 ENKMLKEQVEALIQENMILKR 204 (269)
Q Consensus 184 En~~LK~ql~~l~~eN~iLKR 204 (269)
|...||+.+..|.+|..-||=
T Consensus 3 eiaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888777777763
No 111
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=44.83 E-value=17 Score=27.66 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024305 221 QELHHLKQLVSQYQEQLRTLEVNNYALTMHL 251 (269)
Q Consensus 221 ~El~~Lkql~~qyqEqir~LE~~NYaL~~HL 251 (269)
.||.-||.-+....+++..||..|.-|+-+.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3678889999999999999999999998874
No 112
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=44.49 E-value=30 Score=29.33 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=28.1
Q ss_pred hHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 47 LLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 47 ~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
.|..|..+ +.|+.-+..||..|+.|++.|+..|-.
T Consensus 166 kV~~l~~M--Gf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 166 KIENLCAM--GFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 45555555 788888999999999999999998854
No 113
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=43.67 E-value=85 Score=22.31 Aligned_cols=19 Identities=47% Similarity=0.515 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024305 188 LKEQVEALIQENMILKRAV 206 (269)
Q Consensus 188 LK~ql~~l~~eN~iLKRAv 206 (269)
|-.|++.|.+||..|+|-+
T Consensus 8 L~~QVe~Lk~ENshLrrEL 26 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQEL 26 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 5567788888888777644
No 114
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=42.93 E-value=40 Score=23.63 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024305 187 MLKEQVEALIQENMILK 203 (269)
Q Consensus 187 ~LK~ql~~l~~eN~iLK 203 (269)
.|...++.|..+|.-|+
T Consensus 26 ~Le~~v~~L~~~n~~L~ 42 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELA 42 (62)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 115
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=41.80 E-value=35 Score=22.69 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=17.6
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILK 203 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLK 203 (269)
+++|+|...-.+++.+|..||.-|+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4577777777777777777776554
No 116
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=41.70 E-value=33 Score=23.32 Aligned_cols=36 Identities=22% Similarity=0.074 Sum_probs=27.9
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHH
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRS 80 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIks 80 (269)
+.+|.++..+==--|+..-..+||.++-||+.|+-+
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 456777777654445688999999999999999854
No 117
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=41.04 E-value=1.8e+02 Score=25.27 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=33.9
Q ss_pred hhHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHH
Q 024305 180 SFHQENKMLKEQVEALIQ-----ENMILKRAVSIQHERQKEYEDRSQELHHLK-QLVSQYQEQLRT 239 (269)
Q Consensus 180 ~~~kEn~~LK~ql~~l~~-----eN~iLKRAv~IQheR~~e~e~~~~El~~Lk-ql~~qyqEqir~ 239 (269)
.++.++..|++|++.++. |+.++++=+.+-|+...- +.+|+ +|+.+.||.-+.
T Consensus 150 ~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~K-------IR~lq~~Ll~~~~~~~~~ 208 (213)
T 1ik9_A 150 RLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTK-------IRSLHNKLLNAAQEREKD 208 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHhhhh
Confidence 355666667777777764 667888888888876544 44444 556555554443
No 118
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=40.97 E-value=1.6e+02 Score=26.30 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH
Q 024305 158 ASRALEILEKSICARASAEAAQ 179 (269)
Q Consensus 158 AsRvLEafEksi~~ra~ae~~~ 179 (269)
|..+|..|=..|.+++..+..+
T Consensus 99 Aq~lL~~YI~fv~~~v~~el~~ 120 (248)
T 4e29_A 99 AQMKLAQYIQQVDDKVNQELER 120 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666677777665433
No 119
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=40.95 E-value=33 Score=30.58 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHcCccHHHHHHHHHhh
Q 024305 55 FPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 55 FP~md~q~le~aLe~cgndlDaAIksL~~L 84 (269)
++..|+..|-+.|.+|..|++.|.+.|.+.
T Consensus 87 ~~~~dD~~LlRFLRarkfdv~kA~~~L~~~ 116 (316)
T 3hx3_A 87 VQEKDSGFFLRFIRARKFNVGRAYELLRGY 116 (316)
T ss_dssp TTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 578899999999999999999999998774
No 120
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=40.89 E-value=79 Score=23.72 Aligned_cols=8 Identities=50% Similarity=0.791 Sum_probs=5.0
Q ss_pred HHHHHHHH
Q 024305 200 MILKRAVS 207 (269)
Q Consensus 200 ~iLKRAv~ 207 (269)
.||++|+.
T Consensus 45 ~iL~~A~~ 52 (88)
T 1nkp_A 45 VILKKATA 52 (88)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666664
No 121
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=40.48 E-value=49 Score=22.58 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=21.3
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024305 180 SFHQENKMLKEQVEALIQENMILKRAV 206 (269)
Q Consensus 180 ~~~kEn~~LK~ql~~l~~eN~iLKRAv 206 (269)
.++.-|..|.+.+--|.+||..|+..+
T Consensus 14 ~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 14 DLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 366777888888999999998887654
No 122
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.05 E-value=86 Score=22.80 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=21.2
Q ss_pred HHHHhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 024305 176 EAAQSFHQENKMLKEQVEALIQENMILKRA 205 (269)
Q Consensus 176 e~~~~~~kEn~~LK~ql~~l~~eN~iLKRA 205 (269)
+-+..+++++..|+.+++.|.++|..|+.-
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777776653
No 123
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=40.05 E-value=2.2e+02 Score=26.07 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------------------HHHHHHHHHHHHHHHHHhhhHHH
Q 024305 186 KMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELH------------------HLKQLVSQYQEQLRTLEVNNYAL 247 (269)
Q Consensus 186 ~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~------------------~Lkql~~qyqEqir~LE~~NYaL 247 (269)
..+++++..++.++..-+.+-.+++.-++++++.+.-+. .|...++|-+.+|+.||-..-.|
T Consensus 376 ~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (471)
T 3mq9_A 376 KDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTL 455 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666665554332222 23344556555666666555555
Q ss_pred HHHHHH
Q 024305 248 TMHLKQ 253 (269)
Q Consensus 248 ~~HL~q 253 (269)
--.|+.
T Consensus 456 ~~~~~~ 461 (471)
T 3mq9_A 456 NHKLQD 461 (471)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 124
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=39.68 E-value=15 Score=27.56 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHcCccHHHHHHHHH
Q 024305 58 MDNQILDRALEECGDDLDSAIRSLN 82 (269)
Q Consensus 58 md~q~le~aLe~cgndlDaAIksL~ 82 (269)
++.++|+.+|+.||.++..|.+.|.
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~LG 65 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRLN 65 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 3678999999999999999988764
No 125
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.25 E-value=50 Score=22.98 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 215 EYEDRSQELHHLKQLVSQYQEQLRTL 240 (269)
Q Consensus 215 e~e~~~~El~~Lkql~~qyqEqir~L 240 (269)
|++...+|++.||+-+..-.+++..|
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444444444
No 126
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=38.47 E-value=1.5e+02 Score=23.78 Aligned_cols=16 Identities=31% Similarity=0.202 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhh
Q 024305 229 LVSQYQEQLRTLEVNN 244 (269)
Q Consensus 229 l~~qyqEqir~LE~~N 244 (269)
-..+|++|++.|...|
T Consensus 91 eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 91 KKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777777776655
No 127
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=38.17 E-value=29 Score=22.72 Aligned_cols=25 Identities=16% Similarity=0.460 Sum_probs=18.3
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHH
Q 024305 180 SFHQENKMLKEQVEALIQENMILKR 204 (269)
Q Consensus 180 ~~~kEn~~LK~ql~~l~~eN~iLKR 204 (269)
.+.++|...++.++.|.++|.+|.-
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~ 28 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQ 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHH
Confidence 3566777777778888888887753
No 128
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=37.91 E-value=22 Score=27.14 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=19.2
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHH
Q 024305 179 QSFHQENKMLKEQVEALIQENMILKR 204 (269)
Q Consensus 179 ~~~~kEn~~LK~ql~~l~~eN~iLKR 204 (269)
..||++...+++.+..|..||..||-
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777777777888788888877753
No 129
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=37.26 E-value=30 Score=24.50 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHcCccHHHHHHHHHhh
Q 024305 56 PDMDNQILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 56 P~md~q~le~aLe~cgndlDaAIksL~~L 84 (269)
=.|-.+-=++.|+++|=|++.||..+.+|
T Consensus 17 T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 17 TKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 47888889999999999999999999996
No 130
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=36.95 E-value=91 Score=23.07 Aligned_cols=8 Identities=25% Similarity=0.285 Sum_probs=4.4
Q ss_pred HHHHHHHH
Q 024305 200 MILKRAVS 207 (269)
Q Consensus 200 ~iLKRAv~ 207 (269)
.||++|..
T Consensus 40 ~iL~kA~~ 47 (80)
T 1nlw_A 40 SLLTKAKL 47 (80)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555554
No 131
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=36.94 E-value=1.6e+02 Score=23.49 Aligned_cols=43 Identities=19% Similarity=0.161 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 024305 163 EILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRA 205 (269)
Q Consensus 163 EafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRA 205 (269)
++||+.=+++-.-=..+.+=+|...|...++.+..||+-|++.
T Consensus 17 e~YE~~h~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~ 59 (104)
T 3s9g_A 17 ETYERYHTESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLE 59 (104)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566655554333334557779999999999999999988775
No 132
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=36.70 E-value=1.5e+02 Score=23.19 Aligned_cols=74 Identities=27% Similarity=0.271 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhHHHHHhhHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 162 LEILEKSICARASAEAAQSFHQENKMLK---EQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLR 238 (269)
Q Consensus 162 LEafEksi~~ra~ae~~~~~~kEn~~LK---~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir 238 (269)
|..-|+++.. .-..+++++.+..-++ +++..|..+..|.|.=|. -||. +-|..+ +--.+++++++
T Consensus 11 L~~aEeaL~~--kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~--aERa-dREkl~-------~eKe~L~~ql~ 78 (94)
T 3jsv_C 11 LQQAEEALVA--KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ--AERH-AREKLV-------EKKEYLQEQLE 78 (94)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHH-------HTTSHHHHHHH
T ss_pred HHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHH-------hHHHHHHHHHH
Confidence 4444555544 3334555666665555 566666666666666553 3442 222222 33455666677
Q ss_pred HHHhhhHHH
Q 024305 239 TLEVNNYAL 247 (269)
Q Consensus 239 ~LE~~NYaL 247 (269)
.|...|-.|
T Consensus 79 ~lq~q~~~L 87 (94)
T 3jsv_C 79 QLQREFNKL 87 (94)
T ss_dssp HHHHTTC--
T ss_pred HHHHHHHHH
Confidence 666665444
No 133
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=36.62 E-value=69 Score=20.48 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 024305 221 QELHHLKQLVSQYQEQLRTLEVNN 244 (269)
Q Consensus 221 ~El~~Lkql~~qyqEqir~LE~~N 244 (269)
.++..|.-+|...|+++.+||..-
T Consensus 6 e~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888889999999999999764
No 134
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=36.25 E-value=1.7e+02 Score=23.86 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024305 216 YEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQ 253 (269)
Q Consensus 216 ~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 253 (269)
.++..-|+..|+|.+-..-+.|.+|-..|-.|..|..-
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 44455688999999999999999999999999998743
No 135
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.02 E-value=1.1e+02 Score=22.88 Aligned_cols=17 Identities=12% Similarity=0.436 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024305 218 DRSQELHHLKQLVSQYQ 234 (269)
Q Consensus 218 ~~~~El~~Lkql~~qyq 234 (269)
++..++++|+--+++||
T Consensus 51 ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 51 QKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34445555555555553
No 136
>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A
Probab=35.98 E-value=74 Score=26.33 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=22.2
Q ss_pred CCCCcchHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 024305 130 FQLDGPEWVELFVREMMSSSNIDDARARASRALEILEK 167 (269)
Q Consensus 130 ~p~~g~eWVEl~V~EM~~Asd~dDAraRAsRvLEafEk 167 (269)
-+.||..|++.|++|= +.=|.|||++=|-
T Consensus 49 ~l~DGd~fL~~L~~e~---------~~LAlRIM~VRe~ 77 (134)
T 2peq_A 49 PIQESDLYLEAMMLEN---------KELVLRILTVREN 77 (134)
T ss_dssp CTTSHHHHHHHHHTTC---------HHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHhHC---------HHHHHHHHHHHHH
Confidence 4579999999998861 5558999986443
No 137
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=35.78 E-value=45 Score=23.15 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=28.5
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhh
Q 024305 48 LDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 48 l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 84 (269)
++.|-.+ +.|.+-+.+||.-+.||++.|-.-|.+.
T Consensus 8 I~~L~s~--Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 8 IENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHT--TBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 4445443 7799999999999999999998888764
No 138
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=35.47 E-value=44 Score=28.54 Aligned_cols=36 Identities=11% Similarity=0.304 Sum_probs=32.0
Q ss_pred hhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 46 ~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
.-|..|..+ +.|+..+-.||..|+.|.+.|+..|-+
T Consensus 132 eaI~rL~~m--GF~r~~viqA~~ac~knee~Aan~L~~ 167 (171)
T 2qsf_X 132 QAISRLCEL--GFERDLVIQVYFACDKNEEAAANILFS 167 (171)
T ss_dssp HHHHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 458899988 799999999999999999999988764
No 139
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=35.19 E-value=27 Score=27.44 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=30.4
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCc-cHHHHHHHHHhh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGD-DLDSAIRSLNEL 84 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~L 84 (269)
+..|.+|..+ +.+....++||..||| |++.|+.-|...
T Consensus 4 ~~~l~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 4 ESSVMQLAEM--GFPLEACRKAVYFTGNMGAEVAFNWIIVH 42 (126)
T ss_dssp THHHHHHHTT--SSCCHHHHHHHHHHTSCCHHHHHHHHHHG
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4567777765 4455789999999988 999999999873
No 140
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.56 E-value=1.7e+02 Score=23.11 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=0.0
Q ss_pred chHHHHHHHHHh
Q 024305 135 PEWVELFVREMM 146 (269)
Q Consensus 135 ~eWVEl~V~EM~ 146 (269)
..|-..=+.||.
T Consensus 12 E~~y~~K~eel~ 23 (131)
T 3tnu_A 12 EEWFFTKTEELN 23 (131)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 141
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=34.23 E-value=93 Score=20.63 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024305 220 SQELHHLKQLVSQYQEQLRTLEVNNYAL 247 (269)
Q Consensus 220 ~~El~~Lkql~~qyqEqir~LE~~NYaL 247 (269)
-+|..+|-.-+.|-+|+|.+|...|--|
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3566666667777788888887777654
No 142
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=33.17 E-value=1.3e+02 Score=21.36 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 024305 216 YEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEH 256 (269)
Q Consensus 216 ~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 256 (269)
-|....|..+||+-+..---||-.||....-+.--|++.+.
T Consensus 12 Ve~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 12 VEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 34556788899999988899999999888888888887763
No 143
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=33.13 E-value=1.6e+02 Score=27.50 Aligned_cols=53 Identities=21% Similarity=0.294 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHH
Q 024305 186 KMLKEQVEALIQENMILKRAVSIQHERQKEYED----RSQELHHLKQLVSQYQEQLR 238 (269)
Q Consensus 186 ~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~----~~~El~~Lkql~~qyqEqir 238 (269)
.-||.+|..+..-..-|..-+..|-....+.|. ..-|+-+|+..-++|.+.+.
T Consensus 208 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~ 264 (373)
T 3hhm_B 208 DKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLT 264 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHH
Confidence 344555544444444444444444444333332 12355566666666654433
No 144
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=32.78 E-value=85 Score=26.95 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 024305 152 DDARARASRALEILEK 167 (269)
Q Consensus 152 dDAraRAsRvLEafEk 167 (269)
+|.+.|..++++.+++
T Consensus 194 ~d~~~Rl~~l~~lL~~ 209 (252)
T 3ljc_A 194 SDVNERLEYLMAMMES 209 (252)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4556677777766654
No 145
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=32.57 E-value=2.3e+02 Score=24.11 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 024305 201 ILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEH 256 (269)
Q Consensus 201 iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 256 (269)
++-+-..+|..-.+-.++.+...+.|+..+.+-+++...|+.+.-.|.-|....+.
T Consensus 36 l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e 91 (174)
T 2p22_A 36 ILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQ 91 (174)
T ss_dssp TGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445444333334456667777777777777777788777777776666654
No 146
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=32.04 E-value=42 Score=29.63 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024305 215 EYEDRSQELHHLKQLVSQYQEQLRTLEVN 243 (269)
Q Consensus 215 e~e~~~~El~~Lkql~~qyqEqir~LE~~ 243 (269)
+++....++...+.-+...+.+++.++..
T Consensus 116 ~~~~a~~~~~~a~a~~~~~~~~l~~~~~~ 144 (369)
T 4dk0_A 116 TLNTAKATLNNAKAEMDVVQENIKQAEIE 144 (369)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555543
No 147
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.90 E-value=73 Score=30.26 Aligned_cols=49 Identities=24% Similarity=0.344 Sum_probs=27.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024305 184 ENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 184 En~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~ 242 (269)
.+.-|..++..|.++..+|+ +|+++.+ .|...++.-+...+|++++|..
T Consensus 43 ~~~dl~~~lk~le~~~~~L~----~e~e~l~------~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 43 VNSDIYFKLKKLEKEYELLT----LQEDYIK------DEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp -----CHHHHHHHHHHHHHH----HHHHHHH------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHHH----HHHHHHH------HHHHHHHHHHHHHHHHHHHHcC
Confidence 34455556666666665554 4555433 2455666667778888887754
No 148
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=30.38 E-value=2.2e+02 Score=23.10 Aligned_cols=72 Identities=8% Similarity=0.036 Sum_probs=35.3
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024305 177 AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHL 251 (269)
Q Consensus 177 ~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~LE~~NYaL~~HL 251 (269)
++=|+--|...++++.+.|..+..-+++-+.=-.. +....+-++..+++-+..+++++..|+.++=-|.-+|
T Consensus 62 aALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~---el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 62 MYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKH---ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666555444332211111 2222333445555556666666666666555554443
No 149
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=30.29 E-value=33 Score=30.32 Aligned_cols=15 Identities=47% Similarity=0.554 Sum_probs=5.9
Q ss_pred hHHHhHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEAL 195 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l 195 (269)
+++||..||+++..|
T Consensus 24 l~~eN~~Lk~e~~~l 38 (255)
T 2j5u_A 24 TYTENQHLKERLEEL 38 (255)
T ss_dssp --CTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344454444444333
No 150
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=29.96 E-value=23 Score=33.25 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=31.6
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
+..|..|..+ +.++..+.+||..++||+|.|+.-|..
T Consensus 169 ~~~i~~l~~M--Gf~~~~~~~AL~a~~nn~~~A~e~L~~ 205 (368)
T 1oqy_A 169 ETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLT 205 (368)
T ss_dssp HHHHHHHHTT--TCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4468888887 678899999999999999999988854
No 151
>2apl_A Hypothetical protein PG0816; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG, U function; 2.01A {Porphyromonas gingivalis} SCOP: a.258.1.1
Probab=29.89 E-value=69 Score=27.29 Aligned_cols=38 Identities=26% Similarity=0.187 Sum_probs=29.7
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHH
Q 024305 147 SSSNIDDARARASRALEILEKSICARASAEAAQSFHQE 184 (269)
Q Consensus 147 ~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kE 184 (269)
-|.|-+=-++||..++++||++|.+-...+.++.+..|
T Consensus 27 ~a~D~~FI~~Rad~Aa~aYe~A~~~G~~~~~A~e~A~~ 64 (157)
T 2apl_A 27 MSGNNPFITARSDEALTAYCDAVAQGFSHPEAESMASE 64 (157)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 35666667899999999999999998777666555443
No 152
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.64 E-value=1.3e+02 Score=20.53 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024305 215 EYEDRSQELHHLKQLVSQYQEQLRTLEVN 243 (269)
Q Consensus 215 e~e~~~~El~~Lkql~~qyqEqir~LE~~ 243 (269)
.++...+|...-++-+..||.+++.||..
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456678888888888899999988863
No 153
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=29.27 E-value=2.2e+02 Score=22.67 Aligned_cols=66 Identities=21% Similarity=0.303 Sum_probs=37.3
Q ss_pred HHHHHHHHhhHH-HHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024305 165 LEKSICARASAE-AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTL 240 (269)
Q Consensus 165 fEksi~~ra~ae-~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkql~~qyqEqir~L 240 (269)
|-|++...|-=+ ...++.=+..-||-.++.+-....-|+| ++.++.+++..+|..++.-+.++..|
T Consensus 11 yrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~R----------e~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 11 YKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRR----------QYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666544322 1334455666777777776666665554 45556666666666555555555443
No 154
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=29.22 E-value=76 Score=22.61 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=12.7
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 024305 184 ENKMLKEQVEALIQENMILK 203 (269)
Q Consensus 184 En~~LK~ql~~l~~eN~iLK 203 (269)
....|..+++.|..+|.-|+
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~ 50 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLE 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556666777766666654
No 155
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=29.06 E-value=9.5 Score=28.29 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHcCccHHHHHHHHH
Q 024305 57 DMDNQILDRALEECGDDLDSAIRSLN 82 (269)
Q Consensus 57 ~md~q~le~aLe~cgndlDaAIksL~ 82 (269)
.++.++|..+|+.||.++..|.+.|.
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~LG 75 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLLG 75 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 45788999999999999988887653
No 156
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=29.04 E-value=34 Score=30.19 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=39.9
Q ss_pred ccccCCCCCCCCCCCCCCcchhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhh
Q 024305 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 26 R~Rcssssp~r~~~~~~~~~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 84 (269)
|.||. .++|.++ ..+.+...|.... .++++.++.+++.+|.|+..|+.-|..+
T Consensus 156 ~SRc~---~~~~~~~--~~~~~~~~L~~~~-~~~~~~~~~l~~~s~G~~r~a~~~l~~~ 208 (334)
T 1a5t_A 156 RSRCR---LHYLAPP--PEQYAVTWLSREV-TMSQDALLAALRLSAGSPGAALALFQGD 208 (334)
T ss_dssp HTTSE---EEECCCC--CHHHHHHHHHHHC-CCCHHHHHHHHHHTTTCHHHHHHTTSSH
T ss_pred hhcce---eeeCCCC--CHHHHHHHHHHhc-CCCHHHHHHHHHHcCCCHHHHHHHhccc
Confidence 45773 4667663 2356777888887 7899999999999999999998776554
No 157
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=28.92 E-value=74 Score=28.95 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=29.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHH
Q 024305 148 SSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKR 204 (269)
Q Consensus 148 Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKR 204 (269)
.-+.++..+ .+.+.|++.. ....+..+++..++.+|+++++.|-++..-++.
T Consensus 162 ~d~~~~~~~---e~~~~~~~~~--n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 162 ADSFDEMNA---ELQSKLKDLF--NVDAFKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp CSCCHHHHH---HHHHHHHHHH--TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHH---HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444443 3334555544 122334667888888888888888665544444
No 158
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=28.85 E-value=84 Score=22.79 Aligned_cols=47 Identities=19% Similarity=0.392 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH
Q 024305 188 LKEQVEALIQENMILKRAVSIQHERQK-EYEDRSQELHHLKQLVSQYQ 234 (269)
Q Consensus 188 LK~ql~~l~~eN~iLKRAv~IQheR~~-e~e~~~~El~~Lkql~~qyq 234 (269)
|.++++.++..-.++--+=.-+.+|.+ =+.+.|.-.|-|.-|+++|.
T Consensus 8 Lee~le~Iisgaa~~Ads~~tr~~rke~Iv~eCnavrqALQdLlsEY~ 55 (59)
T 4e18_B 8 LEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYM 55 (59)
T ss_dssp HHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555444443333333333 24556777777888999996
No 159
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=28.81 E-value=1.3e+02 Score=22.49 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=19.2
Q ss_pred HHHHhhHHHhHHHHHHHHHHHHHHHHHHH
Q 024305 176 EAAQSFHQENKMLKEQVEALIQENMILKR 204 (269)
Q Consensus 176 e~~~~~~kEn~~LK~ql~~l~~eN~iLKR 204 (269)
+-++.++.++..|..+++.|.++|..|++
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~ 80 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKH 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777766666666654
No 160
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=28.75 E-value=3.3e+02 Score=25.97 Aligned_cols=19 Identities=5% Similarity=0.198 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024305 223 LHHLKQLVSQYQEQLRTLE 241 (269)
Q Consensus 223 l~~Lkql~~qyqEqir~LE 241 (269)
+..|..++....++|+.|+
T Consensus 93 ~~~~e~~~~~~~~~i~~l~ 111 (409)
T 1m1j_C 93 IIRYENTILAHENTIQQLT 111 (409)
T ss_dssp HHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHH
Confidence 3333333333333333333
No 161
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=28.72 E-value=3.2 Score=30.42 Aligned_cols=27 Identities=7% Similarity=-0.074 Sum_probs=21.8
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEALIQENMILKRAVS 207 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l~~eN~iLKRAv~ 207 (269)
..+|+..|+.++..|..||.+||.+..
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~~~ 90 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAESCL 90 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888899999999988754
No 162
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=28.07 E-value=90 Score=23.10 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=21.4
Q ss_pred HHHHhhHHHhHHHHHHHHHHHHHHHHHHH
Q 024305 176 EAAQSFHQENKMLKEQVEALIQENMILKR 204 (269)
Q Consensus 176 e~~~~~~kEn~~LK~ql~~l~~eN~iLKR 204 (269)
+-+..++.++..|.+..+.|.+||..|+.
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788888888888888777777764
No 163
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=27.88 E-value=2.6e+02 Score=26.88 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=19.9
Q ss_pred HHHHHHHcCccHHHHHHHHHhhhccc
Q 024305 63 LDRALEECGDDLDSAIRSLNELRLGS 88 (269)
Q Consensus 63 le~aLe~cgndlDaAIksL~~L~L~s 88 (269)
|...|.+-..||-..|..|++ .|..
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~-~L~~ 78 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRD-SLFN 78 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHH-HHHH
Confidence 778888888899999999988 4443
No 164
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.79 E-value=2.2e+02 Score=22.32 Aligned_cols=16 Identities=13% Similarity=0.324 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 024305 192 VEALIQENMILKRAVS 207 (269)
Q Consensus 192 l~~l~~eN~iLKRAv~ 207 (269)
++.+...|..|.+.++
T Consensus 52 l~~l~~~~~~LE~~l~ 67 (129)
T 3tnu_B 52 IDNVKKQCANLQNAIA 67 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHH
Confidence 3334444444444443
No 165
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=27.09 E-value=58 Score=23.46 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=33.0
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHHhhhc
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 86 (269)
++-+..|-.+ +.|.+-+.+||.-+.||++.|---|.+.-.
T Consensus 8 e~~Ia~L~sm--Gfsr~da~~AL~ia~Ndv~~AtNiLlEf~~ 47 (56)
T 2juj_A 8 SSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHTTTCSHHHHHHHHHSCC
T ss_pred hHHHHHHHHc--CCCHHHHHHHHHHhcccHHHHHHHHHHHHc
Confidence 4556666655 789999999999999999999988888543
No 166
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=26.97 E-value=2.3e+02 Score=22.25 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024305 221 QELHHLKQLVSQYQEQLRTLEV 242 (269)
Q Consensus 221 ~El~~Lkql~~qyqEqir~LE~ 242 (269)
.++..|++-|....+.|+.||.
T Consensus 75 ~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4444555555555555555554
No 167
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=26.51 E-value=19 Score=27.54 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHcCccHHHHHHHHH
Q 024305 57 DMDNQILDRALEECGDDLDSAIRSLN 82 (269)
Q Consensus 57 ~md~q~le~aLe~cgndlDaAIksL~ 82 (269)
.++.++|+.+|+.||.+...|.+.|.
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~LG 82 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMMG 82 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 34678899999999999999988764
No 168
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.27 E-value=79 Score=22.97 Aligned_cols=8 Identities=38% Similarity=0.534 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 024305 200 MILKRAVS 207 (269)
Q Consensus 200 ~iLKRAv~ 207 (269)
.||+.|+.
T Consensus 50 ~iL~~Ai~ 57 (80)
T 1hlo_A 50 QILDKATE 57 (80)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 169
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.09 E-value=1.2e+02 Score=19.84 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 024305 189 KEQVEALIQENMIL 202 (269)
Q Consensus 189 K~ql~~l~~eN~iL 202 (269)
...++.|+.+|..|
T Consensus 7 E~kVEeLl~~n~~L 20 (34)
T 2oxj_A 7 EXKVXELLXKNXHL 20 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhH
Confidence 34445555555444
No 170
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=25.73 E-value=1.8e+02 Score=20.58 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=35.5
Q ss_pred chhHHHHHhhCCCCCHHHHHHHHHHcCccHHHHHHHHH
Q 024305 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLN 82 (269)
Q Consensus 45 ~~~l~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~ 82 (269)
++++.+-....|+-..+++-+-|+..+=|+.-|+--|.
T Consensus 10 e~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlL 47 (53)
T 2qho_B 10 EELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLL 47 (53)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHh
Confidence 88999999999999999999999999999999987654
No 171
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=25.61 E-value=2.6e+02 Score=22.37 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=12.6
Q ss_pred HHhhHHHhHHHHHHHHHHHHHH
Q 024305 178 AQSFHQENKMLKEQVEALIQEN 199 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l~~eN 199 (269)
+..|+.|+..||..++.+..|.
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~ 38 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTES 38 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666555544
No 172
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=25.19 E-value=1.7e+02 Score=21.48 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=7.6
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 024305 235 EQLRTLEVNNYALTMHLK 252 (269)
Q Consensus 235 Eqir~LE~~NYaL~~HL~ 252 (269)
+++..|+..|-.|...++
T Consensus 57 ~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 57 HSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 173
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=25.14 E-value=64 Score=29.36 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHHHcCccHHHHHHHHHhh
Q 024305 55 FPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 55 FP~md~q~le~aLe~cgndlDaAIksL~~L 84 (269)
.|..|+..|-+.|.+|..|++.|.+.|.+-
T Consensus 30 l~~~dD~~LlRFLrarkfdv~~A~~~l~~~ 59 (403)
T 1olm_A 30 LPNPDDYFLLRWLRARSFDLQKSEAMLRKH 59 (403)
T ss_dssp SSCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 467899999999999999999999999773
No 174
>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C
Probab=24.97 E-value=2.3e+02 Score=24.06 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=23.3
Q ss_pred cCCCCcchHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 024305 129 VFQLDGPEWVELFVREMMSSSNIDDARARASRALEILE 166 (269)
Q Consensus 129 ~~p~~g~eWVEl~V~EM~~Asd~dDAraRAsRvLEafE 166 (269)
+-+.||..|++.|++| + +.=|.|||++=|
T Consensus 67 ~~iqDGe~fl~~L~~E-----~----~~LA~RIM~VRe 95 (155)
T 3hyb_A 67 GKVQDGEKYIEELFLE-----K----PDLALRIMTVRE 95 (155)
T ss_dssp TCCSSHHHHHHHHHHH-----C----HHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHhh-----C----HHHHHHHHHHHH
Confidence 4567999999999999 1 567899997654
No 175
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=24.93 E-value=71 Score=26.73 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHcCccHHHHHHHHHhh
Q 024305 57 DMDNQILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 57 ~md~q~le~aLe~cgndlDaAIksL~~L 84 (269)
..|+..|-+.|.+|..|++.|.+.|.+.
T Consensus 30 ~~dd~~LlRFLra~k~dv~~A~~~l~~~ 57 (262)
T 1r5l_A 30 PLTDSFLLRFLRARDFDLDLAWRLLKNY 57 (262)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5799999999999999999999999763
No 176
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=24.35 E-value=3.7e+02 Score=25.44 Aligned_cols=109 Identities=12% Similarity=0.084 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024305 149 SNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQ 228 (269)
Q Consensus 149 sd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~El~~Lkq 228 (269)
.+.++|..=..|+|+.+|+..-.- -++.+..+. -...+-...+...+--..++||+.|.-.-.-. ---.+..++.
T Consensus 365 g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~-nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~---~Hp~~~~~~~ 439 (490)
T 3n71_A 365 QAYEEASHYARRMVDGYMKLYHHN-NAQLGMAVM-RAGLTNWHAGHIEVGHGMICKAYAILLVTHGP---SHPITKDLEA 439 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSCTT-CHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT---TSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHH
Confidence 466666666666776666643321 111111111 11111122334444456788888886543321 1123444556
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhcCCCCC
Q 024305 229 LVSQYQEQLRTLEVNNYALTMHLKQAEHSNSIPG 262 (269)
Q Consensus 229 l~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g 262 (269)
++.|.+..++..+++-+-+..-...|.++..|..
T Consensus 440 ~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~~ 473 (490)
T 3n71_A 440 MRMQTEMELRMFRQNEFMYHKMREAALNNQPMQV 473 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 7777777777777766666665555655554443
No 177
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=24.13 E-value=2.4e+02 Score=21.49 Aligned_cols=9 Identities=44% Similarity=0.530 Sum_probs=6.7
Q ss_pred HHHHHHHHH
Q 024305 200 MILKRAVSI 208 (269)
Q Consensus 200 ~iLKRAv~I 208 (269)
+|||++|-.
T Consensus 32 ~IL~ksvdY 40 (83)
T 4ath_A 32 TILKASVDY 40 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 688888763
No 178
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=24.06 E-value=1e+02 Score=27.58 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=31.8
Q ss_pred hhHHHHHhh------CCCCCHHHHHHHHHHcCccHHHHHHHHHh
Q 024305 46 HLLDQLAAI------FPDMDNQILDRALEECGDDLDSAIRSLNE 83 (269)
Q Consensus 46 ~~l~~L~~l------FP~md~q~le~aLe~cgndlDaAIksL~~ 83 (269)
..|.+|+.. .+..|+..|-|.|.+|.-|++.|++.|.+
T Consensus 41 ~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~ 84 (320)
T 3q8g_A 41 EALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVE 84 (320)
T ss_dssp HHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 346666655 35689999999999999999999999976
No 179
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=23.72 E-value=69 Score=27.78 Aligned_cols=33 Identities=12% Similarity=0.440 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024305 223 LHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAE 255 (269)
Q Consensus 223 l~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 255 (269)
..+|+++|-+|-++|..||..-|=|-+.++.-.
T Consensus 57 e~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~ 89 (182)
T 1ytz_I 57 MQELQELSKKLHAKIDSVDEERYDTEVKLQKTN 89 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Confidence 346788999999999999999999998886653
No 180
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.44 E-value=1.9e+02 Score=19.97 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024305 186 KMLKEQVEALIQENMILK 203 (269)
Q Consensus 186 ~~LK~ql~~l~~eN~iLK 203 (269)
..|..+++.|..+|.-|+
T Consensus 25 ~~Le~~~~~L~~~n~~L~ 42 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQ 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 181
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.23 E-value=1.4e+02 Score=19.41 Aligned_cols=12 Identities=8% Similarity=0.216 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 024305 190 EQVEALIQENMI 201 (269)
Q Consensus 190 ~ql~~l~~eN~i 201 (269)
..++.|+.+|..
T Consensus 8 dKVEeLl~~~~~ 19 (34)
T 3c3f_A 8 XKLEXILSXLYH 19 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhH
Confidence 334444444433
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=22.59 E-value=3.6e+02 Score=26.75 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 024305 151 IDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRA 205 (269)
Q Consensus 151 ~dDAraRAsRvLEafEksi~~ra~ae~~~~~~kEn~~LK~ql~~l~~eN~iLKRA 205 (269)
+.-++.|+.+++..+...|...... ++++...++++++.+..+-.-|++.
T Consensus 332 l~~~~~~~~~~~~~l~~~i~~~l~~-----l~~~~~~~~~~l~~~~~~~~~l~~~ 381 (695)
T 2j69_A 332 LRQVRTLARLACNHTREAVARRIPL-----LEQDVNELKKRIDSVEPEFNKLTGI 381 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HTSCSHHHHHHHHHTHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666555554443322 4455556666666555554444433
No 183
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=22.21 E-value=1.4e+02 Score=19.42 Aligned_cols=10 Identities=10% Similarity=0.434 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 024305 191 QVEALIQENM 200 (269)
Q Consensus 191 ql~~l~~eN~ 200 (269)
.++.|+.+|.
T Consensus 9 KvEeLl~~~~ 18 (34)
T 2bni_A 9 KLEEILSKGH 18 (34)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHccH
Confidence 3444444443
No 184
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.73 E-value=57 Score=27.34 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=37.3
Q ss_pred CCCCCCCCCCcchhHHHHHhhC----CCCCHHHHHHHHHHcCccHHHHHHHHHhhhcc
Q 024305 34 PVRFSPPRSSRSHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNELRLG 87 (269)
Q Consensus 34 p~r~~~~~~~~~~~l~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~L~ 87 (269)
.++|.++. .+.....|..++ -.++++.++.+.+.||.|+..|+.-|..+.+.
T Consensus 160 ~i~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~ 215 (323)
T 1sxj_B 160 ILRYSKLS--DEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG 215 (323)
T ss_dssp EEECCCCC--HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred EEeecCCC--HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 45566632 244555555443 25889999999999999999999999887643
No 185
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.68 E-value=3.3e+02 Score=22.20 Aligned_cols=11 Identities=45% Similarity=0.332 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 024305 192 VEALIQENMIL 202 (269)
Q Consensus 192 l~~l~~eN~iL 202 (269)
++.|..|+..|
T Consensus 73 vqeLqgEI~~L 83 (121)
T 3mq7_A 73 VEELEGEITTL 83 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 186
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.91 E-value=2.6e+02 Score=24.74 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=24.6
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024305 178 AQSFHQENKMLKEQVEALIQENMILKRAV 206 (269)
Q Consensus 178 ~~~~~kEn~~LK~ql~~l~~eN~iLKRAv 206 (269)
-..||+++..|++.+..|..||.-||..+
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999888643
No 187
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.63 E-value=2e+02 Score=21.26 Aligned_cols=35 Identities=11% Similarity=-0.033 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 024305 222 ELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQAEH 256 (269)
Q Consensus 222 El~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 256 (269)
-+.+|.+.|.+-|.+|.+|+...-.|.-.|+....
T Consensus 29 tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 29 ALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46667777777777888877777777777765553
No 188
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=20.56 E-value=3.3e+02 Score=21.83 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=10.2
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 024305 184 ENKMLKEQVEALIQENMILK 203 (269)
Q Consensus 184 En~~LK~ql~~l~~eN~iLK 203 (269)
++..|+.+...|...|.-|+
T Consensus 51 ~~~eL~~~~~~Le~~n~~L~ 70 (155)
T 2oto_A 51 RAEELEKAKQALEDQRKDLE 70 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554
No 189
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=20.42 E-value=2.8e+02 Score=20.88 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=6.8
Q ss_pred hHHHhHHHHHHHHHH
Q 024305 181 FHQENKMLKEQVEAL 195 (269)
Q Consensus 181 ~~kEn~~LK~ql~~l 195 (269)
+..+|..|++++..|
T Consensus 18 ~E~rN~~Le~~v~~l 32 (79)
T 3cvf_A 18 LETRNAELEHQLRAM 32 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHH
Confidence 333444455544443
No 190
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=20.39 E-value=57 Score=27.26 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=37.9
Q ss_pred CCCCCCCCCCcchhHHHHHhhC----CCCCHHHHHHHHHHcCccHHHHHHHHHhhhcc
Q 024305 34 PVRFSPPRSSRSHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNELRLG 87 (269)
Q Consensus 34 p~r~~~~~~~~~~~l~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~L~ 87 (269)
.++|.++. ...+...|..++ -.++++.++...+.++.|+..++.-|..+.+.
T Consensus 155 ~i~~~~~~--~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~ 210 (319)
T 2chq_A 155 VFRFKPVP--KEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI 210 (319)
T ss_dssp EEECCCCC--HHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred EEEecCCC--HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 35566632 245555565544 35799999999999999999999988887654
No 191
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=20.37 E-value=93 Score=26.87 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=32.0
Q ss_pred chhHHHHHhhC------CCCCHHHHHHHHHHcCccHHHHHHHHHhh
Q 024305 45 SHLLDQLAAIF------PDMDNQILDRALEECGDDLDSAIRSLNEL 84 (269)
Q Consensus 45 ~~~l~~L~~lF------P~md~q~le~aLe~cgndlDaAIksL~~L 84 (269)
...|.+|+..+ +.+|+..|-+.|.+|..|++.|.+.|.+.
T Consensus 31 ~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~~ 76 (296)
T 1aua_A 31 EKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENC 76 (296)
T ss_dssp HHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33466666543 45899999999999999999999999763
No 192
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=20.27 E-value=3.1e+02 Score=21.41 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=26.3
Q ss_pred HHHhHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhhHHH
Q 024305 212 RQKEYEDRSQELHHLKQLVS------------QYQEQLRTLEVNNYAL 247 (269)
Q Consensus 212 R~~e~e~~~~El~~Lkql~~------------qyqEqir~LE~~NYaL 247 (269)
+...+++...+++.|...|. +||+.|++|...--.+
T Consensus 56 ~~~~ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~e~ 103 (111)
T 2l3l_A 56 SVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAER 103 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 55567777888888888775 6888888887654443
No 193
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.21 E-value=43 Score=28.92 Aligned_cols=53 Identities=21% Similarity=0.386 Sum_probs=38.5
Q ss_pred CCCCCCCCCCcchhHHHHHhhC----CCCC-HHHHHHHHHHcCccHHHHHHHHHhhhccc
Q 024305 34 PVRFSPPRSSRSHLLDQLAAIF----PDMD-NQILDRALEECGDDLDSAIRSLNELRLGS 88 (269)
Q Consensus 34 p~r~~~~~~~~~~~l~~L~~lF----P~md-~q~le~aLe~cgndlDaAIksL~~L~L~s 88 (269)
.++|.++ ..+.....|..+. -.++ +..++.+.+.|+.|+-.|+.-|..+.+..
T Consensus 187 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 187 LIRCPAP--SDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNN 244 (354)
T ss_dssp EEECCCC--CHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHTT
T ss_pred EEecCCc--CHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3556663 2256667776553 2466 88999999999999999999998876643
No 194
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=20.12 E-value=2.8e+02 Score=20.70 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024305 192 VEALIQENMILKRAVSIQH 210 (269)
Q Consensus 192 l~~l~~eN~iLKRAv~IQh 210 (269)
+.+++.||+-||-|+.-=|
T Consensus 10 ~q~ll~EN~~LreAlkqsN 28 (70)
T 3brv_B 10 LQRCLEENQELRDAIRQSN 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 4566677777777665444
Done!