BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024307
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQZ|A Chain A, Solution Structure Of Necap1 Protein
Length = 133
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 90/133 (67%), Gaps = 5/133 (3%)
Query: 6 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDP 65
E E L V +V VY+IPPR ++ GY+ +W WTGRLR+ S I+LED
Sbjct: 4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDK 63
Query: 66 NSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
SGELFA V+ PG +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFN
Sbjct: 64 VSGELFAQAPVEQYPG---IAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 120
Query: 124 VALSDHEKYVRRE 136
V+L DH K+V++E
Sbjct: 121 VSLQDHFKWVKQE 133
>pdb|2V50|A Chain A, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|B Chain B, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|C Chain C, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|D Chain D, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|E Chain E, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|F Chain F, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
Length = 1052
Score = 33.5 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 62 LEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFN 114
L D + G LFA PG + V+DS R ++L+ E + F GFN
Sbjct: 564 LPDEDQGVLFAQVQTPPGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFN 616
>pdb|3OLP|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
pdb|3OLP|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
Length = 570
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 77 QPGQRENSVETVLDSSRYFVLKIEDGTGKHA 107
QP Q+ + + +++Y+VLK E G +HA
Sbjct: 33 QPAQQSDLINVAQLTAQYYVLKPEAGNAEHA 63
>pdb|3NA5|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens.
pdb|3NA5|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens
Length = 570
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 77 QPGQRENSVETVLDSSRYFVLKIEDGTGKHA 107
QP Q+ + + +++Y+VLK E G +HA
Sbjct: 33 QPAQQSDLINVAQLTAQYYVLKPEAGNAEHA 63
>pdb|2FUV|A Chain A, Phosphoglucomutase From Salmonella Typhimurium.
pdb|2FUV|B Chain B, Phosphoglucomutase From Salmonella Typhimurium
Length = 549
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 77 QPGQRENSVETVLDSSRYFVLKIEDGTGKHA 107
QP Q+ + + +++Y+VLK E G +HA
Sbjct: 12 QPAQQSDLINVAQLTAQYYVLKPEAGNAEHA 42
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 78 PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN--VALSDHEKYVRR 135
PG SV+ D + VL+ DG GK+ + FN NE D++ ++S +++ R
Sbjct: 92 PGDFSLSVKFGNDVQHFKVLR--DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLR 149
Query: 136 ELEKESGEMSESDGHIDIHPAVNHRL--KEGETIRI 169
++E+ + + D P + L + G+ I +
Sbjct: 150 DIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHV 185
>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|D Chain D, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|E Chain E, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|F Chain F, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
Length = 112
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 78 PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN--VALSDHEKYVRR 135
PG SV+ D + VL+ DG GK+ + FN NE D++ ++S +++ R
Sbjct: 41 PGDFSLSVKFGNDVQHFKVLR--DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLR 98
Query: 136 ELEK 139
++E+
Sbjct: 99 DIEQ 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,304,642
Number of Sequences: 62578
Number of extensions: 269400
Number of successful extensions: 489
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 21
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)