BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024307
(269 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q681Q7|Y1390_ARATH Uncharacterized protein At1g03900 OS=Arabidopsis thaliana
GN=At1g03900 PE=2 SV=1
Length = 272
Score = 333 bits (855), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 192/253 (75%), Positives = 210/253 (83%), Gaps = 16/253 (6%)
Query: 8 SLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNS 67
+ EHTLLVVREV VYKIPPRTTSGGYKCGEWLQSDKIW+GRLRVVSCKDRCEIRLED NS
Sbjct: 11 TFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNS 70
Query: 68 GELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALS 127
G+LFAACFV PG+RENSVE LDSSRYFVL+I+DG GK+AFIGLGF ERNEAFDFNVALS
Sbjct: 71 GDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDFNVALS 130
Query: 128 DHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTS-GTGMLSAAG 186
DHEKYVRRE EKE+GE SESD HIDIHPAVNHRLKEGETIRINVKPKPT+ GTGMLSAA
Sbjct: 131 DHEKYVRREKEKETGETSESDNHIDIHPAVNHRLKEGETIRINVKPKPTTNGTGMLSAA- 189
Query: 187 LSGAVSVSAKAKTVGLAPPPSGMGKIRAPLPPPPNDPAAARINSASHNNGVRAPKETTRH 246
LSG + K K + LAPPP G R+PLPPPPNDP A+RI S KE+ R+
Sbjct: 190 LSG----TGKPKPLALAPPPKAAGVTRSPLPPPPNDPVASRIASD-------GCKESRRN 238
Query: 247 STTDPSSDLSQIE 259
+P SDLSQ++
Sbjct: 239 ---EPLSDLSQLK 248
>sp|Q6P756|NECP2_RAT Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus
GN=Necap2 PE=1 SV=2
Length = 263
Score = 161 bits (407), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 126/217 (58%), Gaps = 19/217 (8%)
Query: 5 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLED 64
+E E L V EV VY+IPPR T+ GY+ EW W+GRLR+ + I+LED
Sbjct: 2 EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLED 61
Query: 65 PNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDF 122
SGELFA V PG +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDF
Sbjct: 62 RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDF 118
Query: 123 NVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGML 182
NVAL DH K+V+++ E ++ + D P ++ KEG+TI+IN+ M
Sbjct: 119 NVALQDHFKWVKQQC-----EFAKQAQNPDEGPKLDLGFKEGQTIKINI-------ANMR 166
Query: 183 SAAGLSGAVSVS-AKAKTVGLAPPPSGMGKIRAPLPP 218
G +GA A A + L PPP G GK+ +PP
Sbjct: 167 KKEGAAGAPRTRPASAGGLSLLPPPPG-GKMSTLIPP 202
>sp|Q3T093|NECP1_BOVIN Adaptin ear-binding coat-associated protein 1 OS=Bos taurus
GN=NECAP1 PE=2 SV=1
Length = 275
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 131/227 (57%), Gaps = 45/227 (19%)
Query: 6 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDP 65
E E L V +V VY+IPPR ++ GY+ +W WTGRLR+ S I+LED
Sbjct: 4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKVAYIKLEDK 63
Query: 66 NSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
SGELFA V+ PG +VETV DSSRYFV++I+DGTG+ AFIG+GF++R +AFDFN
Sbjct: 64 VSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFSDRGDAFDFN 120
Query: 124 VALSDHEKYVRRELE--KESGEMSESDGHIDIHPAVNHRLKEGETIRINV---------- 171
V+L DH K+V++E E KES EM D P ++ KEG+TI++++
Sbjct: 121 VSLQDHFKWVKQESEISKESQEM-------DSRPKLDLGFKEGQTIKLSIGNITTKKGGT 173
Query: 172 -KPKPTSGTGMLSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLP 217
KPK T+GTG LS L PPP G GK+ P P
Sbjct: 174 SKPK-TAGTGGLS------------------LLPPPPG-GKVTIPPP 200
>sp|Q5R630|NECP1_PONAB Adaptin ear-binding coat-associated protein 1 OS=Pongo abelii
GN=NECAP1 PE=2 SV=1
Length = 275
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 128/216 (59%), Gaps = 23/216 (10%)
Query: 6 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDP 65
E E L V +V VY+IPPR ++ GY+ +W WTGRLR+ S I+LED
Sbjct: 4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDK 63
Query: 66 NSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
SGELFA V+ PG +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFN
Sbjct: 64 VSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 120
Query: 124 VALSDHEKYVRRELE--KESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGM 181
V+L DH K+V++E E KES EM D P ++ KEG+TI++++ G
Sbjct: 121 VSLQDHFKWVKQESEISKESQEM-------DARPKLDLGFKEGQTIKLSI--------GN 165
Query: 182 LSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLP 217
++ + +A+ + L PPP G GK+ P P
Sbjct: 166 ITNKEGGASKPRTARGGGLSLLPPPPG-GKVTIPPP 200
>sp|Q9NVZ3|NECP2_HUMAN Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens
GN=NECAP2 PE=1 SV=1
Length = 263
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 125/218 (57%), Gaps = 19/218 (8%)
Query: 5 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLED 64
+E E L V +V VY+IPPR T+ GY+ EW W+GRLR+ + I+LED
Sbjct: 2 EESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLED 61
Query: 65 PNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDF 122
SGELFA V PG +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDF
Sbjct: 62 RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDF 118
Query: 123 NVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGML 182
NVAL DH K+V+++ E ++ + D P ++ KEG+TI++N+ M
Sbjct: 119 NVALQDHFKWVKQQC-----EFAKQAQNPDQGPKLDLGFKEGQTIKLNI-------ANMK 166
Query: 183 SAAGLSGAVSV-SAKAKTVGLAPPPSGMGKIRAPLPPP 219
G +G V A + L PPP G GK +PPP
Sbjct: 167 KKEGAAGNPRVRPASTGGLSLLPPPPG-GKTSTLIPPP 203
>sp|P69682|NECP1_RAT Adaptin ear-binding coat-associated protein 1 OS=Rattus norvegicus
GN=Necap1 PE=1 SV=1
Length = 277
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 128/219 (58%), Gaps = 29/219 (13%)
Query: 6 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDP 65
E E L V +V VY+IPPR ++ GY+ +W WTGRLR+ S I+LED
Sbjct: 4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDK 63
Query: 66 NSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
SGELFA V+ PG +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFN
Sbjct: 64 VSGELFAQAPVEQYPGI---AVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 120
Query: 124 VALSDHEKYVRRELE--KESGEMSESDGHIDIHPAVNHRLKEGETIRI---NVKPKPTSG 178
V+L DH K+V++E E KES EM D P ++ KEG+TI++ N+ K G
Sbjct: 121 VSLQDHFKWVKQETEISKESQEM-------DSRPKLDLGFKEGQTIKLSIGNITAK-KGG 172
Query: 179 TGMLSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLP 217
T A+G G + L PPP G GK+ P P
Sbjct: 173 TSKPRASGTGG----------LSLLPPPPG-GKVTIPPP 200
>sp|Q9CR95|NECP1_MOUSE Adaptin ear-binding coat-associated protein 1 OS=Mus musculus
GN=Necap1 PE=1 SV=2
Length = 275
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 130/218 (59%), Gaps = 27/218 (12%)
Query: 6 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDP 65
E E L V +V VY+IPPR ++ GY+ +W WTGRLR+ S I+LED
Sbjct: 4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDK 63
Query: 66 NSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
SGELFA V+ PG +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFN
Sbjct: 64 VSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 120
Query: 124 VALSDHEKYVRRELE--KESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGM 181
V+L DH K+V++E E KES EM D P ++ KEG+TI++++ G
Sbjct: 121 VSLQDHFKWVKQETEISKESQEM-------DNRPKLDLGFKEGQTIKLSI--------GN 165
Query: 182 LSAAGLSGAVSVSAKAKTVGLA--PPPSGMGKIRAPLP 217
++A G S + T GL+ PPP G GK+ P P
Sbjct: 166 ITAK--KGGASKPRASGTGGLSLLPPPPG-GKVTIPPP 200
>sp|Q8NC96|NECP1_HUMAN Adaptin ear-binding coat-associated protein 1 OS=Homo sapiens
GN=NECAP1 PE=1 SV=2
Length = 275
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 127/216 (58%), Gaps = 23/216 (10%)
Query: 6 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDP 65
E E L V +V VY+IPPR ++ GY+ +W WTGRLR+ S I+LED
Sbjct: 4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDK 63
Query: 66 NSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
SGELFA V+ PG +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFN
Sbjct: 64 VSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 120
Query: 124 VALSDHEKYVRRELE--KESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGM 181
V+L DH K+V++E E KES EM D P ++ KEG+TI++ + G
Sbjct: 121 VSLQDHFKWVKQESEISKESQEM-------DARPKLDLGFKEGQTIKLCI--------GN 165
Query: 182 LSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLP 217
++ + +A+ + L PPP G GK+ P P
Sbjct: 166 ITNKKGGASKPRTARGGGLSLLPPPPG-GKVTIPPP 200
>sp|Q9D1J1|NECP2_MOUSE Adaptin ear-binding coat-associated protein 2 OS=Mus musculus
GN=Necap2 PE=1 SV=1
Length = 266
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 123/217 (56%), Gaps = 19/217 (8%)
Query: 5 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLED 64
+E E L V EV VY+IPPR T+ GY+ EW W+GRLR+ + I+LED
Sbjct: 2 EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLED 61
Query: 65 PNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDF 122
SGELFA V PG +VE+V DSSRYFV++IEDG G+ AFIGLGF +R +AFDF
Sbjct: 62 RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGLGFGDRGDAFDF 118
Query: 123 NVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGML 182
NVAL DH K+V+++ E ++ + D P ++ K+G+TI+IN+ M
Sbjct: 119 NVALQDHFKWVKQQC-----EFAKQAQNPDEGPKLDLGFKDGQTIKINI-------ANMR 166
Query: 183 SAAGLSGAVSVS-AKAKTVGLAPPPSGMGKIRAPLPP 218
G +G A + L PPP G GK +PP
Sbjct: 167 KKEGAAGTPRARPTSAGGLSLLPPPPG-GKSSTVIPP 202
>sp|Q5E9Q4|NECP2_BOVIN Adaptin ear-binding coat-associated protein 2 OS=Bos taurus
GN=NECAP2 PE=2 SV=1
Length = 266
Score = 154 bits (388), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 122/214 (57%), Gaps = 15/214 (7%)
Query: 5 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLED 64
+E E L V +V VY+IPPR T+ GY+ EW W+GRLR+ + I+LED
Sbjct: 2 EEAEYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLED 61
Query: 65 PNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDF 122
SGELFA V PG +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDF
Sbjct: 62 RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDF 118
Query: 123 NVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGML 182
NVAL DH K+V+++ E ++ + D P ++ KEG+TI++N+ S
Sbjct: 119 NVALQDHFKWVKQQC-----EFAKQAQNPDQGPKLDLSFKEGQTIKLNI----ASMKKKD 169
Query: 183 SAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPL 216
AAG A S ++ L PPP APL
Sbjct: 170 GAAGTPRARPTSTGGLSL-LPPPPGAKTAALAPL 202
>sp|Q9VXB0|NECAP_DROME NECAP-like protein CG9132 OS=Drosophila melanogaster GN=CG9132 PE=2
SV=1
Length = 246
Score = 151 bits (382), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 123/206 (59%), Gaps = 19/206 (9%)
Query: 9 LEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSG 68
E L+V EV +YKIPPR ++ GY+ G+W + WTGR+R+V+ ++LED SG
Sbjct: 3 YESVLIVKPEVFIYKIPPRASNRGYRAGDWNLKEPTWTGRMRLVAKGTAVVLKLEDKTSG 62
Query: 69 ELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVAL 126
LFA C + PG ++E V DSSRYFV++++D G+ AF+GLGF +R+++FD NVAL
Sbjct: 63 ALFANCPIDTYPGV---AIEAVSDSSRYFVIRVQDDNGRSAFLGLGFGDRSDSFDLNVAL 119
Query: 127 SDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGMLSAAG 186
DH K+V+ + + E E +E +D+ KEGETI+IN++ G+ S G
Sbjct: 120 QDHFKWVKNQEQIEK-EKTEPKQELDLG------FKEGETIKINMRITKKDGSEGSSRTG 172
Query: 187 LSGAVSVSAKAKTVGLAPPPSGMGKI 212
+ K + L PPP G+GKI
Sbjct: 173 KN-------KGSSGVLPPPPGGLGKI 191
>sp|Q568Z4|SPCS3_RAT Signal peptidase complex subunit 3 OS=Rattus norvegicus GN=Spcs3
PE=2 SV=1
Length = 180
Score = 34.7 bits (78), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 20/155 (12%)
Query: 74 CFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGF------NERNEAFDFNVALS 127
C + ++ S L SR + K+ED TG LGF + + FD+N
Sbjct: 26 CILTTAFKDRSAPVRLHVSRILLKKVEDFTGPRKKSDLGFITFHISADLEKTFDWN---- 81
Query: 128 DHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGMLSAAGL 187
V++ S E S ++ + L GE ++N+K + GL
Sbjct: 82 -----VKQLFLYLSAEYSTKSNAVNQVVLWDKILLRGENPKLNLKDVKSKYFFFDDGHGL 136
Query: 188 SG--AVSVSAKAKTV---GLAPPPSGMGKIRAPLP 217
G V+++ + + G+ P +G G++ P P
Sbjct: 137 KGNRNVTLTLSWQVIPIAGILPLVTGSGRVSVPFP 171
>sp|Q9D365|SPCS3_MOUSE Signal peptidase complex subunit 3 OS=Mus musculus GN=Spcs3 PE=2
SV=1
Length = 180
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 20/155 (12%)
Query: 74 CFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGF------NERNEAFDFNVALS 127
C + ++ S L SR + K+ED TG LGF + + FD+N
Sbjct: 26 CILTTAFKDRSAPVRLHVSRILLKKVEDFTGPRKKSDLGFITFHISADLEKTFDWN---- 81
Query: 128 DHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGMLSAAGL 187
V++ S E S ++ + L GE ++N+K + GL
Sbjct: 82 -----VKQLFLYLSAEYSTKSNAVNQVVLWDKILLRGENPKLNLKDVKSKYFFFDDGHGL 136
Query: 188 SG--AVSVSAKAKTV---GLAPPPSGMGKIRAPLP 217
G V+++ + + G+ P +G G++ P P
Sbjct: 137 KGNRNVTLTLSWQVIPIAGILPLVTGSGRVSVPFP 171
>sp|P52002|MEXB_PSEAE Multidrug resistance protein MexB OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mexB
PE=1 SV=2
Length = 1046
Score = 33.5 bits (75), Expect = 1.7, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 62 LEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFN 114
L D + G LFA PG + V+DS R ++L+ E + F GFN
Sbjct: 564 LPDEDQGVLFAQVQTPPGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFN 616
>sp|Q74IZ2|SYGB_LACJO Glycine--tRNA ligase beta subunit OS=Lactobacillus johnsonii
(strain CNCM I-12250 / La1 / NCC 533) GN=glyS PE=3 SV=1
Length = 690
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 142 GEMSESDGHIDIHPAVNHRLKEGETIRINVKPK--PTSGTGMLSAAGLSGAVSVSAKAKT 199
GE +E G + +H A + E E + + +K PTS G L + + +S++ K T
Sbjct: 402 GEFAELQGVMGMHYA--RLIGENENVSVAIKESYMPTSAEGDLPSTTVGSLLSIADKLDT 459
Query: 200 VGLAPPPSGMGKIRAPLPPPPNDPAAARINS 230
+ ++ +GM +P NDP A R N+
Sbjct: 460 I-ISFFGAGM------IPSSSNDPYALRRNA 483
>sp|C0Z6T1|ARGC_BREBN N-acetyl-gamma-glutamyl-phosphate reductase OS=Brevibacillus brevis
(strain 47 / JCM 6285 / NBRC 100599) GN=argC PE=3 SV=1
Length = 346
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 102 GTGKHAFIGLGFNERNEAFD-FNVALSDHEKYVRRELEKESGE 143
G G+ +G+ ++E NE+ + VA H + +EL+K+SGE
Sbjct: 183 GAGRGVSLGVHYSETNESIHAYKVASHQHTPEIEQELQKQSGE 225
>sp|Q9CQI4|CK074_MOUSE Uncharacterized protein C11orf74 homolog OS=Mus musculus GN=Nwc
PE=2 SV=1
Length = 244
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 32 GYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVET 87
G+K G Q D G+++V + D ++ +E+ + ++ C + PG+ E + T
Sbjct: 103 GHKVGSSFQGDMTRAGKVKVDNFLDLEDVDMEEESKPQMNKDCLLLPGEVEQDIST 158
>sp|Q9LUS2|TC120_ARATH Translocase of chloroplast 120, chloroplastic OS=Arabidopsis
thaliana GN=TOC120 PE=1 SV=1
Length = 1089
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 138 EKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTSGTGMLSAAGLSGAVS-VSAK 196
EK E S+G DI N + + + +N+ P+ M + + +VS ++
Sbjct: 266 EKGETESQNSNGGHDIQS--NKEIVKQQDSSVNIGPEIKESQHMERESEVLSSVSPTESR 323
Query: 197 AKTVGLAPP-PSGMGKIRAPLPPPPNDPAAARIN-SASHNNGVRAPKETT 244
+ T L P P+G+G+ L P P R+N + SHN +A TT
Sbjct: 324 SDTAALPPARPAGLGRAAPLLEPAPRVTQQPRVNGNVSHNQPQQAEDSTT 373
>sp|A8MVX0|ARG33_HUMAN Rho guanine nucleotide exchange factor 33 OS=Homo sapiens
GN=ARHGEF33 PE=2 SV=2
Length = 844
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 171 VKPKPTSGTGMLSAAGLSGAVSVSAKAKTVGLAPPPSGMGKIRAPLP-PPPNDPAAARIN 229
++P P S T S AG S A + A A+ G A P + + P PP D A R+
Sbjct: 673 LQPLPKSAT---SPAGSSSAYKLEAAAQAHGKAKP---LSRSLKEFPRAPPADGVAPRLY 726
Query: 230 SASHNNGVRAPKETTR 245
S ++G RAP + R
Sbjct: 727 STRSSSGGRAPIKAER 742
>sp|Q9BZL4|PP12C_HUMAN Protein phosphatase 1 regulatory subunit 12C OS=Homo sapiens
GN=PPP1R12C PE=1 SV=1
Length = 782
Score = 31.2 bits (69), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 114 NERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 171
+R E F AL + E++ RR LE+++ E+ E + A N RLK+ I V
Sbjct: 719 TQRQERFAERPALLELERFERRALERKAAELEEELKALSDLRADNQRLKDENAALIRV 776
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,424,266
Number of Sequences: 539616
Number of extensions: 4890459
Number of successful extensions: 15945
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 15672
Number of HSP's gapped (non-prelim): 287
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)