Query 024307
Match_columns 269
No_of_seqs 134 out of 173
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 05:59:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tqz_A Necap1; endocytosis, st 100.0 1.5E-70 5E-75 458.4 6.5 131 5-136 3-133 (133)
2 1qc6_A EVH1 domain from ENA/VA 94.3 0.11 3.7E-06 42.2 6.9 102 10-132 3-111 (130)
3 1rrp_B Nuclear pore complex pr 91.3 1.3 4.5E-05 35.8 9.2 107 9-129 20-131 (134)
4 3n7c_A ABR034WP; nuclear pore 91.0 2.4 8.3E-05 34.4 10.5 110 10-133 10-122 (130)
5 1k5d_B RAN-specific GTPase-act 90.6 1.6 5.6E-05 38.2 9.8 116 10-137 45-166 (201)
6 1xke_A RAN-binding protein 2; 84.2 15 0.0005 29.5 11.2 108 10-131 7-119 (130)
7 1i2h_A PSD-ZIP45(homer-1C/VESL 79.1 16 0.00056 31.2 10.1 113 10-139 8-121 (168)
8 2cay_A VPS36 PH domain, vacuol 78.5 13 0.00045 30.6 9.1 104 10-137 29-139 (145)
9 2y8g_A Ranbp3-B, RAN-binding p 75.5 25 0.00085 28.6 9.9 113 10-139 14-133 (138)
10 1ddw_A GLGF-domain protein hom 73.2 26 0.00088 28.0 9.3 111 10-138 3-115 (120)
11 2crf_A RAN binding protein 3; 72.4 39 0.0013 27.8 11.2 109 10-135 26-141 (150)
12 3m1i_B RAN-specific GTPase-act 71.9 49 0.0017 28.7 11.5 110 10-133 73-188 (191)
13 1egx_A VAsp, vasodilator-stimu 63.6 48 0.0016 26.1 8.9 103 10-133 3-113 (115)
14 1mke_A WIP - N-WAsp, fusion pr 63.1 17 0.00058 30.5 6.4 81 36-129 57-139 (152)
15 4hat_B RAN-specific GTPase-act 62.1 63 0.0022 26.3 11.2 111 9-133 21-137 (140)
16 1nkw_Y 50S ribosomal protein L 60.3 5.4 0.00018 29.9 2.6 49 8-58 8-56 (73)
17 2ifs_A N-WAsp, wiskott-aldrich 56.5 15 0.00051 31.3 5.1 81 36-129 74-156 (169)
18 2lyd_A Decapping protein 1; DC 52.7 71 0.0024 26.0 8.3 102 6-128 25-129 (134)
19 3f1f_4 50S ribosomal protein L 50.0 14 0.00046 29.3 3.4 50 8-59 34-83 (97)
20 2jp2_A Spred-2, sprouty-relate 47.9 40 0.0014 27.2 6.1 69 55-133 56-124 (126)
21 2ec1_A Nucleoporin 50 kDa; ran 46.4 78 0.0027 25.1 7.5 81 46-130 35-123 (125)
22 2qkl_A DCP1 protein, SPBC3B9.2 43.1 1.3E+02 0.0044 24.2 10.4 96 6-122 20-117 (127)
23 1wia_A Hypothetical ubiquitin- 38.3 40 0.0014 24.5 4.3 18 157-174 62-79 (95)
24 1p3r_A Disabled homolog 2; PTB 36.3 1.3E+02 0.0044 24.5 7.5 76 46-131 61-136 (160)
25 3v2d_4 50S ribosomal protein L 35.8 18 0.00061 27.0 2.0 50 8-59 8-57 (71)
26 3efy_A CIF (cell cycle inhibit 33.2 27 0.00093 30.4 3.0 22 88-109 48-69 (195)
27 1xod_A Spred1; sprouty, EVH1, 31.2 93 0.0032 24.6 5.7 67 55-131 47-113 (118)
28 1evh_A WH1 domain, protein (ME 30.7 83 0.0028 24.6 5.2 104 10-132 3-110 (112)
29 4fbj_A CIF, hypothetical prote 29.6 33 0.0011 31.1 3.1 23 87-109 115-137 (261)
30 1n7v_A Adsorption protein P2; 28.9 25 0.00084 33.8 2.2 64 46-113 296-373 (555)
31 4f8c_A Cycle inhibiting factor 28.0 36 0.0012 31.0 3.0 22 88-109 142-163 (275)
32 3eir_A Putative ATP/GTP bindin 26.5 40 0.0014 30.7 3.0 29 88-116 146-175 (281)
33 1gcq_C VAV proto-oncogene; SH3 24.8 33 0.0011 23.4 1.7 15 158-172 26-40 (70)
34 2lx7_A GAS-7, growth arrest-sp 23.4 46 0.0016 23.1 2.3 13 158-170 20-32 (60)
35 2a28_A BZZ1 protein; SH3 domai 22.4 58 0.002 21.0 2.5 16 158-173 16-31 (54)
36 2g6f_X RHO guanine nucleotide 22.2 41 0.0014 22.2 1.7 15 158-172 20-34 (59)
37 1k1z_A VAV; SH3, proto-oncogen 21.6 42 0.0014 23.5 1.8 16 157-172 33-48 (78)
38 2bz8_A SH3-domain kinase bindi 21.6 43 0.0015 22.0 1.7 15 158-172 17-31 (58)
39 2lj0_A Sorbin and SH3 domain-c 21.6 41 0.0014 23.6 1.7 14 158-171 22-35 (65)
40 3f0w_A NUMB-R, NUMB-like prote 21.2 3.3E+02 0.011 22.0 7.5 70 60-133 89-159 (168)
41 2jte_A CD2-associated protein; 21.1 44 0.0015 22.4 1.7 15 158-172 22-36 (64)
42 2drm_A Acanthamoeba myosin IB; 20.7 46 0.0016 21.7 1.7 15 158-172 19-33 (58)
43 1y0m_A 1-phosphatidylinositol- 20.6 46 0.0016 22.1 1.7 15 158-172 19-33 (61)
44 2xmf_A Myosin 1E SH3; motor pr 20.5 46 0.0016 22.0 1.7 15 158-172 21-35 (60)
45 1jo8_A ABP1P, actin binding pr 20.3 67 0.0023 21.0 2.5 15 158-172 16-30 (58)
46 1tuc_A Alpha-spectrin; capping 20.2 48 0.0016 22.4 1.8 16 158-173 5-20 (63)
47 1g2b_A Spectrin alpha chain; c 20.2 65 0.0022 21.5 2.5 15 158-172 37-51 (62)
48 1tg0_A BBC1 protein, myosin ta 20.0 47 0.0016 22.6 1.7 14 158-171 23-36 (68)
No 1
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=100.00 E-value=1.5e-70 Score=458.41 Aligned_cols=131 Identities=51% Similarity=0.859 Sum_probs=123.6
Q ss_pred cccceeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCCeEEEEEecCCCCceeeeeeccCCCCCCc
Q 024307 5 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENS 84 (269)
Q Consensus 5 ~~d~iE~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLrVv~~g~~~~I~LED~~tGeLFA~cpv~pg~~~~a 84 (269)
++++||+|||++++||||+|||++|++||||+||++++|||||||||+++|++|.|+|||++||+|||+|||.. ....+
T Consensus 3 ~~~~~E~vL~v~~ev~VY~IPP~~s~~GyrA~dW~~~~~~wtGrlrv~~~g~~~~I~LeD~~tGeLFA~cPv~~-~~~~~ 81 (133)
T 1tqz_A 3 AELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQ-YPGIA 81 (133)
T ss_dssp CSCCCSCCCBCCSSEEEEECCSCCSSSSCCHHHHCCSSSCEEEEEEEECCSSSEEEEEECSSCCSSCEEEEECS-SCCCC
T ss_pred cccceeEEEEEcCcEEEEecCCCCCCCCcccccCCCCCceeEEEEEEEEeCCEEEEEEEeCCCCcEEEeCcccC-CCCcc
Confidence 35779999999999999999999999999999999999999999999999999999999999999999999932 12479
Q ss_pred eeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHHHHHh
Q 024307 85 VETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRE 136 (269)
Q Consensus 85 VE~V~DSSRYFVLRV~D~~GR~AfIGiGF~ERsdAFDFnvaLqD~~K~l~r~ 136 (269)
||+|+||||||||||+|++||||||||||+||+||||||||||||+||++++
T Consensus 82 VE~v~DSSRYFVlRv~d~~gr~AfiGiGF~eR~dAFDF~vaLqd~~k~~~~~ 133 (133)
T 1tqz_A 82 VETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQE 133 (133)
T ss_dssp EEECTTCCSCEEEEEEETTTEEEEEEEECSCHHHHHHHHHHHHHHHSCSSCC
T ss_pred eEEeecCcCeEEEEEECCCCcEEEEeeeecccccccchHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999763
No 2
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=94.35 E-value=0.11 Score=42.19 Aligned_cols=102 Identities=15% Similarity=0.246 Sum_probs=71.6
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeE-----EEEEEEeCCeEEEEEecC--CCCceeeeeeccCCCCC
Q 024307 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTG-----RLRVVSCKDRCEIRLEDP--NSGELFAACFVQPGQRE 82 (269)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtG-----RLrVv~~g~~~~I~LED~--~tGeLFA~cpv~pg~~~ 82 (269)
|++|+.. .++||.+=|.+ + .|. +.-+| ++.|......-.+||.|- .++.+=..|.++++
T Consensus 3 E~~i~~~-~A~V~~~d~~~--~-----~W~---~~g~G~~~l~~V~i~~~~~~~~~Riv~~~~~~~~vi~n~~i~~~--- 68 (130)
T 1qc6_A 3 EQSICQA-RASVMVYDDTS--K-----KWV---PIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQVVINYSIVKG--- 68 (130)
T ss_dssp CEEEEEE-EEEEEEEETTT--T-----EEE---ECC-----CEEEEEEEETTTTEEEEEEECTTTCCEEEEEECCTT---
T ss_pred ceeEEEE-EEEEEEECCCC--C-----cee---ECCCCceeeeEEEEEecCCCcEEEEEEEeCCCCeEEEeeEEeCC---
Confidence 5566654 45666664532 2 274 33466 788888777888999986 57788889988876
Q ss_pred CceeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHH
Q 024307 83 NSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKY 132 (269)
Q Consensus 83 ~aVE~V~DSSRYFVLRV~D~~GR~AfIGiGF~ERsdAFDFnvaLqD~~K~ 132 (269)
.+-.-++.+|..-+.. ...+||.|.+-.||=-|.-++++..+.
T Consensus 69 --~~y~~~~~~Fh~w~~~-----~~~~GL~F~se~eA~~F~~~~~~al~~ 111 (130)
T 1qc6_A 69 --LKYNQATPTFHQWRDA-----RQVYGLNFASKEEATTFSNAMLFALNI 111 (130)
T ss_dssp --CEEEEEETTEEEEECS-----SCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred --cEEeccCCeeEEEEcC-----CEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 4444488888888633 369999999999999999888876443
No 3
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=91.26 E-value=1.3 Score=35.84 Aligned_cols=107 Identities=16% Similarity=0.284 Sum_probs=78.4
Q ss_pred eeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEe--CCeEEEEEecCCCCceeeeeeccCCCCCCcee
Q 024307 9 LEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSC--KDRCEIRLEDPNSGELFAACFVQPGQRENSVE 86 (269)
Q Consensus 9 iE~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLrVv~~--g~~~~I~LED~~tGeLFA~cpv~pg~~~~aVE 86 (269)
=|.+||-.+ |-+|+.=.- ..+|. .-=+|.|||... ..++-|.+-...+|.|-+.+++.|+- .+.
T Consensus 20 ~E~~lf~~r-aKL~~~~~~-------~~~Wk---erG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m---~~~ 85 (134)
T 1rrp_B 20 DEEEFFCNR-AKLFRFDVE-------SKEWK---ERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDM---KLT 85 (134)
T ss_dssp SEEEEEEEE-EEEEEECSS-------SSCEE---EEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSSC---CCB
T ss_pred CeEEEEEEE-EEEEEEccc-------CCCcc---cCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecCCc---eEe
Confidence 356777755 677776321 13463 233799999874 35777777766799999999998873 567
Q ss_pred EeccccceEEEEEec---CCCCeEEEeeeecccCcccchhhhhhhH
Q 024307 87 TVLDSSRYFVLKIED---GTGKHAFIGLGFNERNEAFDFNVALSDH 129 (269)
Q Consensus 87 ~V~DSSRYFVLRV~D---~~GR~AfIGiGF~ERsdAFDFnvaLqD~ 129 (269)
+...|.+.++.-..| +.++...+.|=|..-.+|=.|..++.++
T Consensus 86 ~~~~s~~~~~~~~~d~~d~~~k~~~~~irfk~~e~A~~f~~~~~e~ 131 (134)
T 1rrp_B 86 PNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEA 131 (134)
T ss_dssp CSTTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHT
T ss_pred ecCCCCeEEEEEcccccCCCCceEEEEEEECCHHHHHHHHHHHHHH
Confidence 777788988887775 3456778899999888888888888765
No 4
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=90.96 E-value=2.4 Score=34.39 Aligned_cols=110 Identities=10% Similarity=0.107 Sum_probs=73.9
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC---CeEEEEEecCCCCceeeeeeccCCCCCCcee
Q 024307 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK---DRCEIRLEDPNSGELFAACFVQPGQRENSVE 86 (269)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLrVv~~g---~~~~I~LED~~tGeLFA~cpv~pg~~~~aVE 86 (269)
|.+||..+ |-+|+.=+- + .+|. .-=.|-|||.... .++-|.+-...+|.|-+.++|.|+ -.+.
T Consensus 10 E~~lf~~r-aKL~~f~~~--~-----~~Wk---erG~G~lkil~~k~~~~k~RllmR~d~~~kv~lN~~i~~~---m~~~ 75 (130)
T 3n7c_A 10 EEVLFCEK-AKLLIFDSD--T-----KGYT---SRGVGELKLLRKKDDKGKVRVLCRSEGMGHVLLNTSVVKS---FKYQ 75 (130)
T ss_dssp CEEEEEEE-EEEEEECC----------CEE---EEEEEEEEEEEETTEEEEEEEEEEC-CCCCEEEEEECCTT---BCCE
T ss_pred eeEEEEEE-EEEEEEeCC--C-----CCch---hcceEEEEEEEecCCCCEEEEEEEecCCceEEeeccccCC---cEEe
Confidence 56777755 677776321 2 2453 2227999998754 356666666668999999999886 3567
Q ss_pred EeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHHH
Q 024307 87 TVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYV 133 (269)
Q Consensus 87 ~V~DSSRYFVLRV~D~~GR~AfIGiGF~ERsdAFDFnvaLqD~~K~l 133 (269)
+...|.+-||--....+|.-....|=|..=.+|=.|.-+++++.+-+
T Consensus 76 ~~~~~~~~~v~~~~~~dgk~~~~~lrfks~e~A~~f~~~iee~~~~~ 122 (130)
T 3n7c_A 76 PIDADNENLIKWPIITDGKLETFIIKVKQKADGRRLVGAVADAQQAM 122 (130)
T ss_dssp ESCTTCTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred EcCCCCccEEEEEecCCCceEEEEEEECCHHHHHHHHHHHHHHHhhh
Confidence 77655555543221134677788999999999999999999986543
No 5
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=90.63 E-value=1.6 Score=38.15 Aligned_cols=116 Identities=16% Similarity=0.309 Sum_probs=83.4
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC--CeEEEEEecCCCCceeeeeeccCCCCCCceeE
Q 024307 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK--DRCEIRLEDPNSGELFAACFVQPGQRENSVET 87 (269)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLrVv~~g--~~~~I~LED~~tGeLFA~cpv~pg~~~~aVE~ 87 (269)
|.+||-++ |-+|+.-+-... ..|. .-=+|-|||.... .++.|.+--..++.|-+.++|.|+- .+.+
T Consensus 45 Ee~lf~~R-aKLf~f~~d~~~-----~~WK---ERGvG~lkIlk~k~t~k~RlvMR~d~~~kV~LN~~I~~~m---~~~~ 112 (201)
T 1k5d_B 45 EEELFKMR-AKLFRFASENDL-----PEWK---ERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMM---ELKP 112 (201)
T ss_dssp CCCSEEEE-EEEEEECCTTSS-----CCEE---EEEEEEEEEEECSSSCCEEEEEEETTTCCEEEEEECCSSC---CCCB
T ss_pred ceEEEEEe-eeEEEecccccC-----CCcc---ccceEEEEEEEcCCCCcEEEEEEECCcceEEEeeEecCCc---eeee
Confidence 56777765 788887443222 2463 2236899999653 5777777766789999999998873 5666
Q ss_pred eccccceEEEEE-ec---CCCCeEEEeeeecccCcccchhhhhhhHHHHHHHhh
Q 024307 88 VLDSSRYFVLKI-ED---GTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRREL 137 (269)
Q Consensus 88 V~DSSRYFVLRV-~D---~~GR~AfIGiGF~ERsdAFDFnvaLqD~~K~l~r~~ 137 (269)
..-|.|.||.-+ .| +.++--.+-|=|..=.+|=.|..+++++.+-++...
T Consensus 113 ~~~s~ks~v~~~~~d~ad~~~k~e~~~iRfks~e~A~~f~~~~ee~k~~~~~~~ 166 (201)
T 1k5d_B 113 NAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEERE 166 (201)
T ss_dssp CSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCceEEEEeccccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHHHhhh
Confidence 667788888865 55 233556788889888889999999999988776543
No 6
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=84.16 E-value=15 Score=29.47 Aligned_cols=108 Identities=15% Similarity=0.294 Sum_probs=77.3
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC--CeEEEEEecCCCCceeeeeeccCCCCCCceeE
Q 024307 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK--DRCEIRLEDPNSGELFAACFVQPGQRENSVET 87 (269)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLrVv~~g--~~~~I~LED~~tGeLFA~cpv~pg~~~~aVE~ 87 (269)
|.+||.++ |-+|+.=.- + .+|. .-=+|-|||.... .++-|.+-...++.|-+.++|.|+ -.+.+
T Consensus 7 E~~l~~~r-aKL~~~~~~--~-----~~Wk---ERG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~---m~~~~ 72 (130)
T 1xke_A 7 EKVLYSQR-VKLFRFDAE--V-----SQWK---ERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTT---MNLKP 72 (130)
T ss_dssp EEEEEEEE-EEEEEEETT--T-----TEEE---EEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTT---SCEEE
T ss_pred eEEEEEEE-EEEEEEcCC--C-----CCcc---cCcEEEEEEEEcCCCCeEEEEEEEcCCCeEEEecEeCCC---cEEee
Confidence 56777765 566665221 1 2463 2336899999663 567777776668999999999887 35777
Q ss_pred eccccceEEEEEec---CCCCeEEEeeeecccCcccchhhhhhhHHH
Q 024307 88 VLDSSRYFVLKIED---GTGKHAFIGLGFNERNEAFDFNVALSDHEK 131 (269)
Q Consensus 88 V~DSSRYFVLRV~D---~~GR~AfIGiGF~ERsdAFDFnvaLqD~~K 131 (269)
..-|.+.|+....| +.++-....|=|..=.+|=.|..+++++.+
T Consensus 73 ~~~s~~~~~~~~~d~~d~~~~~~~~~irfks~e~a~~f~~~~ee~k~ 119 (130)
T 1xke_A 73 LSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQR 119 (130)
T ss_dssp CTTCSSCEEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEecccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 76677877776655 345678889999988899999999888754
No 7
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=79.08 E-value=16 Score=31.16 Aligned_cols=113 Identities=17% Similarity=0.295 Sum_probs=72.8
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCC-CceeeEEEEEEEeCCeEEEEEecCCCCceeeeeeccCCCCCCceeEe
Q 024307 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQS-DKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVETV 88 (269)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~-~~iwtGRLrVv~~g~~~~I~LED~~tGeLFA~cpv~pg~~~~aVE~V 88 (269)
|+.|+. -.++||.+-|.+- ++ |... .. .+++-|+--..+-.+++.+-..+++--.|.++++- .-.
T Consensus 8 E~~I~s-~rA~Vm~~D~~tk-~~-----WvP~g~~--~~~V~i~~d~~rnsyRIvg~~d~kvvinc~I~~~l-----~Y~ 73 (168)
T 1i2h_A 8 EQPIFS-TRAHVFQIDPNTK-KN-----WVPTSKH--AVTVSYFYDSTRNVYRIISLDGSKAIINSTITPNM-----TFT 73 (168)
T ss_dssp SCCSEE-EEEEEEEECTTSS-CC-----SEESCSS--CEEEEEEEETTTTEEEEEEEETTEEEEEEECCTTC-----CEE
T ss_pred ceeEEE-EEEEEEEECCCCC-Cc-----eeecCCC--CeEEEEEEcCCCCEEEEEEccCCEEEEecEecCCc-----EEe
Confidence 444444 4578999877432 23 6431 22 35666776655444666666667888889888762 222
Q ss_pred ccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHHHHHhhhh
Q 024307 89 LDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEK 139 (269)
Q Consensus 89 ~DSSRYFVLRV~D~~GR~AfIGiGF~ERsdAFDFnvaLqD~~K~l~r~~e~ 139 (269)
--+--|..-| |+ .-.-..||+|..-.||-.|.-++++....|+...+.
T Consensus 74 kasp~FHqW~--d~-~~~~v~GLnF~Se~eA~~F~~~~~~ale~l~~~~~~ 121 (168)
T 1i2h_A 74 KTSQKFGQWA--DS-RANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEK 121 (168)
T ss_dssp EEETTEEEEE--ET-TTTEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCcccceee--cC-CCcEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222233334 31 114789999999999999999999999888877665
No 8
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=78.53 E-value=13 Score=30.63 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=61.3
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCCeEEEEEecCCCCc-eeeeeeccCCCCCCceeEe
Q 024307 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGE-LFAACFVQPGQRENSVETV 88 (269)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLrVv~~g~~~~I~LED~~tGe-LFA~cpv~pg~~~~aVE~V 88 (269)
|++|++.+.|.+|.=. ++...++ .|+|-++..- -| ..|.+..+ .--..|+. .|..|
T Consensus 29 E~il~~~d~V~Ly~g~-------~k~~~~k------~G~lyLTshR-II---yv~~~~~~~~SfslPL~------~v~~~ 85 (145)
T 2cay_A 29 EKDIFIDQSVGLYHGK-------SKILQRQ------RGRIFLTSQR-II---YIDDAKPTQNSLGLELD------DLAYV 85 (145)
T ss_dssp CCEEEEEEEEEEEETT-------EECTTCS------SEEEEEESSE-EE---EEESSCHHHHCEEEEGG------GEEEE
T ss_pred CEEEEEcCCcceecCC-------CCCcCCC------ccEEEEEcCe-EE---EecCCCCcceEEEeEhH------heeee
Confidence 7899999999999722 2222333 6777665442 12 22433333 12233542 23333
Q ss_pred ccccceE------EEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHHHHHhh
Q 024307 89 LDSSRYF------VLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRREL 137 (269)
Q Consensus 89 ~DSSRYF------VLRV~D~~GR~AfIGiGF~ERsdAFDFnvaLqD~~K~l~r~~ 137 (269)
-=++.+| +|+++-+.-..+++-|-|.+-+. +||.-+|++..+-..+|+
T Consensus 86 e~~~~~fg~s~Ki~l~~~p~~~~~~~~KLsFk~GGa-~eF~~~l~~al~~~~~~~ 139 (145)
T 2cay_A 86 NYSSGFLTRSPRLILFFKDPSSSTEFVQLSFRKSDG-VLFSQATERALENILTEK 139 (145)
T ss_dssp EEECSSSSSSCEEEEEESSCSSTTCCEEEEESSSCC-HHHHHHHHHHHHHHHHC-
T ss_pred eEEcCccccCceEEEEecCCCCCceEEEEEEcCCCc-hHHHHHHHHHHHHHHHhh
Confidence 3334343 45555444467999999999776 999999998765554443
No 9
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=75.55 E-value=25 Score=28.55 Aligned_cols=113 Identities=14% Similarity=0.193 Sum_probs=71.8
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC------CeEEEEEecCCCCceeeeeeccCCCCCC
Q 024307 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK------DRCEIRLEDPNSGELFAACFVQPGQREN 83 (269)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLrVv~~g------~~~~I~LED~~tGeLFA~cpv~pg~~~~ 83 (269)
|.+||.++ |-+|+.=. .+ .+|. .-=+|-|||.... .++-|.+--..++.|-+.++|.|+-
T Consensus 14 E~~~~~~r-aKL~~f~~--~~-----~~Wk---ERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m--- 79 (138)
T 2y8g_A 14 ESNVLQMQ-CKLFVFDK--TS-----QSWV---AVGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQM--- 79 (138)
T ss_dssp CEEEEEEE-EEEEEEET--TT-----TEEE---EEEEEEEEEEEEECTTTCCEEEEEEEEETTTCCEEEEEECCTTC---
T ss_pred cEEEEEEE-eEEEEEec--CC-----CCch---hceEEEEEEEEeccCCCCCccEEEEEEEcCcceEEEeeEecCCc---
Confidence 45666654 55555421 11 2463 2236899999763 4677777766789999999998873
Q ss_pred ceeEeccccceEEEEEecCC-CCeEEEeeeecccCcccchhhhhhhHHHHHHHhhhh
Q 024307 84 SVETVLDSSRYFVLKIEDGT-GKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEK 139 (269)
Q Consensus 84 aVE~V~DSSRYFVLRV~D~~-GR~AfIGiGF~ERsdAFDFnvaLqD~~K~l~r~~e~ 139 (269)
.++.. |.|++++...|.. |.-....|=|..=.+|=-|. ++.++-..++...+.
T Consensus 80 ~~~~~--~~k~~~~~~~d~~d~~~~~~lirfk~~e~a~lf~-~~~~~i~~lk~~~~~ 133 (138)
T 2y8g_A 80 QIDKA--SEKSIRITAMDTEDQGVKVFLISASSKDTGQLYA-ALHHRILALRSRVEQ 133 (138)
T ss_dssp CEEEE--ETTEEEEECCC--CCCCCEEEEECCHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred eeecC--CCCEEEEEEecCCCCceEEEEEEECCHHHHHHHH-HHHHHHHHhhccccc
Confidence 45543 5678888888853 34447788887777775554 666666666554443
No 10
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=73.21 E-value=26 Score=28.03 Aligned_cols=111 Identities=17% Similarity=0.324 Sum_probs=68.1
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCC-CceeeEEEEEEEeCCeEEEEEecCCCCceeeeeeccCCCCCCceeEe
Q 024307 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQS-DKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVETV 88 (269)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~-~~iwtGRLrVv~~g~~~~I~LED~~tGeLFA~cpv~pg~~~~aVE~V 88 (269)
|+.|+. -.++||.+-|.+- ++ |... .. .+++-++--..+-..++.+-..+++=-.|.++++- ..-+
T Consensus 3 E~~i~~-~rA~V~~~D~~tk-~~-----W~p~g~~--~~~V~~~~d~~~~~yRIv~~~~~~vv~n~~i~~~l---~y~~- 69 (120)
T 1ddw_A 3 EQPIFS-TRAHVFQIDPNTK-KN-----WVPTSKH--AVTVSYFYDSTRNVYRIISLDGSKAIINSTITPNM---TFTK- 69 (120)
T ss_dssp EEEEEE-EEEEEEEECTTTS-CS-----EEESCSS--CEEEEEEEETTTTEEEEEEEETTEEEEEEECCTTC---CCEE-
T ss_pred ceEEEE-EEEEEEEEcCCCC-Cc-----eEeCCCC--ceEEEEEEcCCCCEEEEEEccCCEEEEeCEecCCc---EEee-
Confidence 566665 4678999877432 23 6431 11 26666666554444666666667888889988772 2222
Q ss_pred ccccceE-EEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHHHHHhhh
Q 024307 89 LDSSRYF-VLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELE 138 (269)
Q Consensus 89 ~DSSRYF-VLRV~D~~GR~AfIGiGF~ERsdAFDFnvaLqD~~K~l~r~~e 138 (269)
.+-+| .-| |+ .-.-..|++|..-.||=.|.-++++...-+++..+
T Consensus 70 --a~p~FhqW~--d~-~~~~~~GLnF~s~~eA~~F~~~~~~~~~~l~~~~~ 115 (120)
T 1ddw_A 70 --TSQKFGQWA--DS-RANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKE 115 (120)
T ss_dssp --CSSSEEEEE--ET-TTTEEEEEECSSHHHHHHHHHHHHHHHHHHC----
T ss_pred --CCccccEEE--cC-CCcEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333 334 32 11478999999999999999998887776665443
No 11
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=72.42 E-value=39 Score=27.77 Aligned_cols=109 Identities=13% Similarity=0.158 Sum_probs=71.6
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC------CeEEEEEecCCCCceeeeeeccCCCCCC
Q 024307 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK------DRCEIRLEDPNSGELFAACFVQPGQREN 83 (269)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLrVv~~g------~~~~I~LED~~tGeLFA~cpv~pg~~~~ 83 (269)
|.+||-++ |-+|+.=. . ..+|. .-=+|-|||.... .++-|.+--..++.|-+.++|.|+-
T Consensus 26 E~~l~~~r-aKL~~fd~--~-----~~~Wk---ERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m--- 91 (150)
T 2crf_A 26 ESNVLQMQ-CKLFVFDK--T-----SQSWV---ERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQM--- 91 (150)
T ss_dssp CEEEEEEE-EEEEEEET--T-----TTEEE---EEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECCTTC---
T ss_pred eEEEEEEE-eEEEEEcC--C-----CCCcc---cceeEEEEEEeccccCCCCccEEEEEEEcCcceEEeeeeccCCc---
Confidence 56777765 66666521 1 12453 2237999999753 3566666666689999999998873
Q ss_pred ceeEeccccceEEEEEecC-CCCeEEEeeeecccCcccchhhhhhhHHHHHHH
Q 024307 84 SVETVLDSSRYFVLKIEDG-TGKHAFIGLGFNERNEAFDFNVALSDHEKYVRR 135 (269)
Q Consensus 84 aVE~V~DSSRYFVLRV~D~-~GR~AfIGiGF~ERsdAFDFnvaLqD~~K~l~r 135 (269)
.++. -|.+++++...|. .|.-....|=|..=.+|=-|. ++.++-..++.
T Consensus 92 ~~~~--~~~k~~~~~~~d~~d~~~~~~lirfk~~e~a~lf~-~~~e~i~~l~~ 141 (150)
T 2crf_A 92 QIDK--ASEKSIHITAMDTEDQGVKVFLISASSKDTGQLYA-ALHHRILALRS 141 (150)
T ss_dssp CEEC--CSSSEEEEEEEBSSSCCEEEEEEECCHHHHHHHHH-HHHHHHHHHHH
T ss_pred eeec--CCCCEEEEEeecCCCCceEEEEEEECCHHHHHHHH-HHHHHHHHHHh
Confidence 3443 3578899888885 345567889999888885554 56665555543
No 12
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=71.89 E-value=49 Score=28.69 Aligned_cols=110 Identities=18% Similarity=0.335 Sum_probs=76.9
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC--CeEEEEEecCCCCceeeeeeccCCCCCCceeE
Q 024307 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK--DRCEIRLEDPNSGELFAACFVQPGQRENSVET 87 (269)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLrVv~~g--~~~~I~LED~~tGeLFA~cpv~pg~~~~aVE~ 87 (269)
|.+||..+ |-+|+.=.- . ..|. .-=+|-|||.... .++.|.+-...+|.|-+..+|.|+- .+.+
T Consensus 73 Ee~lf~~R-aKLf~f~~~--~-----~~WK---ERGvG~lkilk~ket~k~RllMR~d~~~kV~LN~~I~~~m---~~~~ 138 (191)
T 3m1i_B 73 EEVLYKVR-AKLFRFDAD--A-----KEWK---ERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEY---TLKP 138 (191)
T ss_dssp EEEEEEEE-EEEEEEETT--T-----TEEE---EEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTTC---CCBC
T ss_pred eeeeeEEe-eEEEEEecC--C-----CCcc---ceeEEEEEEEEcCCCCeEEEEEEecCcceEEEeeecCCCc---EEeE
Confidence 56777754 777776331 1 2352 2226889998764 4677777766789999999998873 5666
Q ss_pred eccccceEEEEE-ec-CCC--CeEEEeeeecccCcccchhhhhhhHHHHH
Q 024307 88 VLDSSRYFVLKI-ED-GTG--KHAFIGLGFNERNEAFDFNVALSDHEKYV 133 (269)
Q Consensus 88 V~DSSRYFVLRV-~D-~~G--R~AfIGiGF~ERsdAFDFnvaLqD~~K~l 133 (269)
..-|-|.||.-+ .| ..| .--.+-|=|..=.+|=.|.-+++++++.+
T Consensus 139 ~~~sdks~v~~~~~D~sdge~k~e~~aIRFk~~E~A~eF~~~~eeaq~~n 188 (191)
T 3m1i_B 139 NVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEIN 188 (191)
T ss_dssp CTTCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEecCcCCCCCcceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 666668887765 45 234 35677888988888999999999886644
No 13
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=63.63 E-value=48 Score=26.11 Aligned_cols=103 Identities=15% Similarity=0.264 Sum_probs=66.4
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceee---E--EEEEEEe--CCeEEEEEecCC-CCceeeeeeccCCCC
Q 024307 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWT---G--RLRVVSC--KDRCEIRLEDPN-SGELFAACFVQPGQR 81 (269)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwt---G--RLrVv~~--g~~~~I~LED~~-tGeLFA~cpv~pg~~ 81 (269)
|+.|+. -.++||.+-|.+. + |.. .-. | ++.++-. .....|++.|-. ++++=-.|.++++-
T Consensus 3 e~~i~~-~~A~V~~~d~~~~--~-----W~p---~~~g~~gvs~V~~~~d~~~~~yrI~~~~l~~~~~vv~~~~l~~~l- 70 (115)
T 1egx_A 3 ETVICS-SRATVMLYDDGNK--R-----WLP---AGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIVRGV- 70 (115)
T ss_dssp SCEEEE-EEEECBEECTTTS--S-----CCB---SSCSCCCCEEEEEEEETTTTEEEEEEEESSTTCCEEEEEEECSSC-
T ss_pred ceeEEE-EEEEEEEEcCCCC--c-----eeE---CCCCCCCccEEEEEEeCCCCEEEEEEEEcCCCCEEEEeeEEcCCc-
Confidence 455555 4578888866432 2 742 222 3 4566654 467888999876 77777889887762
Q ss_pred CCceeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHHH
Q 024307 82 ENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYV 133 (269)
Q Consensus 82 ~~aVE~V~DSSRYFVLRV~D~~GR~AfIGiGF~ERsdAFDFnvaLqD~~K~l 133 (269)
+-.-.+- || ..-.|+ | -.+|++|.+-.||=.|.-++++..+.|
T Consensus 71 ----~y~~~~p-~F-H~w~~~--~-~~~GLnF~se~eA~~F~~~v~~al~~l 113 (115)
T 1egx_A 71 ----KYNQATP-NF-HQWRDA--R-QVWGLNFGSKEDAAQFAAGMASALEAL 113 (115)
T ss_dssp ----CCCCSST-TE-EEEESS--S-CEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ----eEEecCc-cc-eEEecC--C-EEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 1112222 33 344553 3 699999999999999998888765544
No 14
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=63.14 E-value=17 Score=30.53 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=55.5
Q ss_pred CCCCCCCceeeEEEEEEEe--CCeEEEEEecCCCCceeeeeeccCCCCCCceeEeccccceEEEEEecCCCCeEEEeeee
Q 024307 36 GEWLQSDKIWTGRLRVVSC--KDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGF 113 (269)
Q Consensus 36 adW~~~~~iwtGRLrVv~~--g~~~~I~LED~~tGeLFA~cpv~pg~~~~aVE~V~DSSRYFVLRV~D~~GR~AfIGiGF 113 (269)
..|. ...+|-|-++.- +....|+|.|..++.+-=.+.++-+ .+-.-|-. |=+..+ |-..++|+-|
T Consensus 57 ~~W~---~~~~Gal~~VkD~~~rsyf~RlvDl~~~~viweqELY~~-----f~Y~~~r~--~FHtFe---~d~c~~GLnF 123 (152)
T 1mke_A 57 CMWS---KKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNN-----FVYNSPRG--YFHTFA---GDTCQVALNF 123 (152)
T ss_dssp TEEE---EEEEEEEEEEEETTTTEEEEEEECSSSCSEEEEEECCSS-----CCCBCSSS--SEEEEE---CSSSEEEEEE
T ss_pred CceE---ecCceEEEEEEECCCCeEEEEEEEccCCeEEEEeecccc-----eeeccCCC--eEEEEe---cCCcEEEEee
Confidence 3585 347898888776 5677899999987765445555443 22223333 333344 3466799999
Q ss_pred cccCcccchhhhhhhH
Q 024307 114 NERNEAFDFNVALSDH 129 (269)
Q Consensus 114 ~ERsdAFDFnvaLqD~ 129 (269)
.+..||-.|.-.+++.
T Consensus 124 ade~EA~~F~~~V~~~ 139 (152)
T 1mke_A 124 ANEEEAKKFRKAVTDL 139 (152)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999888864
No 15
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=62.13 E-value=63 Score=26.34 Aligned_cols=111 Identities=18% Similarity=0.318 Sum_probs=77.1
Q ss_pred eeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC--CeEEEEEecCCCCceeeeeeccCCCCCCcee
Q 024307 9 LEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK--DRCEIRLEDPNSGELFAACFVQPGQRENSVE 86 (269)
Q Consensus 9 iE~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLrVv~~g--~~~~I~LED~~tGeLFA~cpv~pg~~~~aVE 86 (269)
=|.+||..+ |-+|+.=+- . .+|. .-=+|-|||.... .++-|.+-...+|.+-+..+|.|+- .+.
T Consensus 21 ~E~~lf~~r-aKLf~f~~~--~-----~~Wk---erG~G~lkilk~k~~~k~RllmR~d~~~kv~lN~~i~~~m---~~~ 86 (140)
T 4hat_B 21 DEEVLYKVR-AKLFRFDKD--A-----KEWK---ERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEY---TLK 86 (140)
T ss_dssp TEEEEEEEE-EEEEEEETT--T-----TEEE---EEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTTC---CCB
T ss_pred CeeEEEEEe-EEEEEEcCC--C-----CCcc---cccEEEEEEEEcCCCCeEEEEEEecCcceEEEEeEecCCe---EEe
Confidence 366777766 788876331 1 2463 1226889998753 5677777766789999999998873 466
Q ss_pred EeccccceEEEEE-ec---CCCCeEEEeeeecccCcccchhhhhhhHHHHH
Q 024307 87 TVLDSSRYFVLKI-ED---GTGKHAFIGLGFNERNEAFDFNVALSDHEKYV 133 (269)
Q Consensus 87 ~V~DSSRYFVLRV-~D---~~GR~AfIGiGF~ERsdAFDFnvaLqD~~K~l 133 (269)
+..-|-|-||.-+ .| +.+.-..+-|=|..=.+|=.|.-+++++++..
T Consensus 87 ~~~~s~k~~v~~~~~D~sdg~~~~~~~~iRfk~~e~A~~f~~~~ee~~~~n 137 (140)
T 4hat_B 87 PNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEIN 137 (140)
T ss_dssp CCTTCSSEEEEEEEEECTTSSCEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCceEEEEccccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 6655667777654 44 22345677888988888999999999886643
No 16
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=60.31 E-value=5.4 Score=29.94 Aligned_cols=49 Identities=16% Similarity=0.296 Sum_probs=36.1
Q ss_pred ceeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCCeE
Q 024307 8 SLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRC 58 (269)
Q Consensus 8 ~iE~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLrVv~~g~~~ 58 (269)
+|..|.+++.-=.+|.+ +++..-++.+=|....|.|||.-|++.++.++
T Consensus 8 ~y~~v~~~~s~g~~f~t--~ST~~~i~vdi~s~~HPFyTGkqk~vdt~GRV 56 (73)
T 1nkw_Y 8 KAVPCKIIYQGQVVMET--MSTRPEIHVDVWSGVHPFWTGEERFLDTEGRV 56 (73)
T ss_pred CCEEEEEEECCCCEEEE--cccCCCEEEEECCCCCcCCcCcEEEEeccccH
Confidence 35667777754456666 44445588888988899999999999987654
No 17
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=56.53 E-value=15 Score=31.32 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=55.3
Q ss_pred CCCCCCCceeeEEEEEEEe--CCeEEEEEecCCCCceeeeeeccCCCCCCceeEeccccceEEEEEecCCCCeEEEeeee
Q 024307 36 GEWLQSDKIWTGRLRVVSC--KDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGF 113 (269)
Q Consensus 36 adW~~~~~iwtGRLrVv~~--g~~~~I~LED~~tGeLFA~cpv~pg~~~~aVE~V~DSSRYFVLRV~D~~GR~AfIGiGF 113 (269)
..|. ...+|-|-++.- +....|+|.|..++.+-=.+.++-+ .+-.-|-.=|.+ .+ |-..++|+-|
T Consensus 74 ~~W~---~~~~Gal~~vkD~~~rsyf~RlvDl~~~~vvweqELY~~-----f~Y~~~r~~FHt--Fe---~d~c~~GLnF 140 (169)
T 2ifs_A 74 CMWS---KKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNN-----FVYNSPRGYFHT--FA---GDTCQVALNF 140 (169)
T ss_dssp TEEE---EEEEEEEEEEEETTTTEEEEEEEETTTCCCCEEEECCSS-----CCCBCCCSSEEE--EE---CSSSEEEEEC
T ss_pred CeeE---ecCceEEEEEEECCCCeEEEEEEEccCCeEEEEeecccc-----eeeccCCCeEEE--ee---cCCcEEEEee
Confidence 3585 347998888776 4577899999987765445555433 222233332333 44 4567799999
Q ss_pred cccCcccchhhhhhhH
Q 024307 114 NERNEAFDFNVALSDH 129 (269)
Q Consensus 114 ~ERsdAFDFnvaLqD~ 129 (269)
.+..||-.|.-++++.
T Consensus 141 ade~EA~~F~~~V~~~ 156 (169)
T 2ifs_A 141 ANEEEAKKFRKAVTDL 156 (169)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999888863
No 18
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=52.67 E-value=71 Score=25.99 Aligned_cols=102 Identities=10% Similarity=0.131 Sum_probs=65.1
Q ss_pred ccceeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCC---eEEEEEecCCCCceeeeeeccCCCCC
Q 024307 6 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKD---RCEIRLEDPNSGELFAACFVQPGQRE 82 (269)
Q Consensus 6 ~d~iE~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLrVv~~g~---~~~I~LED~~tGeLFA~cpv~pg~~~ 82 (269)
|..|++||.++.-|.||+.=+.+. .|. +.--.|-|=|+++.. -+.|.|--.++..+ - -++.++
T Consensus 25 Dp~I~~Il~~a~~v~vY~f~~~~~-------~W~--K~~iEG~LFv~~R~~~P~~~~ivLNR~~~~n~-~-~~l~~~--- 90 (134)
T 2lyd_A 25 DPYAKEIVDSSSHVAFYTFNSSQN-------EWE--KTDVEGAFFIYHRNAEPFHSIFINNRLNTTSF-V-EPITGS--- 90 (134)
T ss_dssp CTTCCEEEEEEEEEEEEEEETTTT-------EEE--EEEEEEEEEEEECSSSSSEEEEEEETTTTEEE-E-EECCSS---
T ss_pred CcHHHHHHhhCCeEEEEEecCCcC-------cee--EcCCcceEEEEEccCCCceEEEEEcCCCCcce-e-EEcCCC---
Confidence 357999999999999999854322 585 556789999999853 45566665555443 2 234333
Q ss_pred CceeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhh
Q 024307 83 NSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSD 128 (269)
Q Consensus 83 ~aVE~V~DSSRYFVLRV~D~~GR~AfIGiGF~ERsdAFDFnvaLqD 128 (269)
.-+|-. | -|..+|.. +.-..||.|-|-.|.=...-.|+.
T Consensus 91 ~~~e~~-~--~~li~r~~----~~~I~GiWf~~~~d~~~i~~~l~~ 129 (134)
T 2lyd_A 91 LELQSQ-P--PFLLYRNE----RSRIRGFWFYNSEECDRISGLVNG 129 (134)
T ss_dssp CEEEEE-T--TEEEEEEG----GGEEEEEEESSHHHHHHHHHHHHH
T ss_pred cEEEee-C--CEEEEECC----CCcEEEEEecChHHHHHHHHHHHH
Confidence 223322 2 36666644 346899999887765555544443
No 19
>3f1f_4 50S ribosomal protein L31; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 3d5d_4 3d5b_4 3f1h_4
Probab=49.98 E-value=14 Score=29.32 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=21.2
Q ss_pred ceeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCCeEE
Q 024307 8 SLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCE 59 (269)
Q Consensus 8 ~iE~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLrVv~~g~~~~ 59 (269)
+|..|.+++.-=.+|.+ +++..-++.+=|....|.|||.-|++.++.+++
T Consensus 34 ~Y~~v~v~ct~G~~f~t--~ST~~~i~vDI~S~~HPFYTGkqk~vdt~GRVe 83 (97)
T 3f1f_4 34 KLVPARIICGCGNVIET--YSTKPEIYVEVCSKCHPFYTGQQRFVDTEGRVE 83 (97)
T ss_dssp --CCCEEEETTEEEEEC--CCSSCCEEESSCTTC------------------
T ss_pred CCeEEEEEECCCCEEEe--eeeeeEEEEEECCCCCCCCcCCEEEEcccCcHH
Confidence 36777777765556665 444456899999988999999999999876653
No 20
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=47.93 E-value=40 Score=27.19 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=47.3
Q ss_pred CCeEEEEEecCCCCceeeeeeccCCCCCCceeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHHH
Q 024307 55 KDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYV 133 (269)
Q Consensus 55 g~~~~I~LED~~tGeLFA~cpv~pg~~~~aVE~V~DSSRYFVLRV~D~~GR~AfIGiGF~ERsdAFDFnvaLqD~~K~l 133 (269)
.....|+.++-.++++=-.|.++++ +.-.-.+--|- .-.|.+ -.+|++|.+-.||=.|.-++++....|
T Consensus 56 ~~~yrI~~~~l~d~~vv~~~~l~~~-----l~Y~~~~p~FH--~w~~~~---~~~GLnF~se~eA~~F~~~v~~al~~l 124 (126)
T 2jp2_A 56 RSGFLIHGERQKDKLVVLECYVRKD-----LVYTKANPTFH--HWKVDN---RKFGLTFQSPADARAFDRGVRKAIEDL 124 (126)
T ss_dssp CBCEEEEEEESSSSCEEEEEEESSC-----CCEEEEETTEE--EEECSS---SEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEcCCCeEEEEEEEeCC-----ceEEecCCcce--EEEcCC---EEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 3567788888767888889998876 22222333233 344432 339999999999999998888766554
No 21
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.37 E-value=78 Score=25.14 Aligned_cols=81 Identities=9% Similarity=0.251 Sum_probs=54.8
Q ss_pred eEEEEEEEe-CCeEEEEEecCCC-CceeeeeeccCCCCCCceeEeccccceEEEEEecC--CCC----eEEEeeeecccC
Q 024307 46 TGRLRVVSC-KDRCEIRLEDPNS-GELFAACFVQPGQRENSVETVLDSSRYFVLKIEDG--TGK----HAFIGLGFNERN 117 (269)
Q Consensus 46 tGRLrVv~~-g~~~~I~LED~~t-GeLFA~cpv~pg~~~~aVE~V~DSSRYFVLRV~D~--~GR----~AfIGiGF~ERs 117 (269)
.|-|||... ..++-|.+--..+ |.+-+...+.|+- .+++. .+-+.+++-+.++ .|. -..+=|=|..=.
T Consensus 35 vG~lki~~~k~~k~RllmR~d~~~~kv~lN~~i~~~m---~~~~~-g~~~~~~~~~~~~~~d~~~~~~~~~~~lrfk~~e 110 (125)
T 2ec1_A 35 IGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNM---PCTRT-GKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSE 110 (125)
T ss_dssp EEEEEEEECSSSSEEEEEEESSSSCCBSCCEECCSSC---CEECC-TTTEEEEEECCSSCSCSSSSSSCEEEEEECSSHH
T ss_pred EEEEEeeecCCCcEEEEEEecCCCCEEEEeeEEcCCC---eEEec-CCCcEEEEEccCCcccCCCCCceEEEEEEECCHH
Confidence 688888876 3466666554444 8998888888763 56665 5556666665443 343 445557787777
Q ss_pred cccchhhhhhhHH
Q 024307 118 EAFDFNVALSDHE 130 (269)
Q Consensus 118 dAFDFnvaLqD~~ 130 (269)
+|=.|..+++++.
T Consensus 111 ~a~~f~~~~~e~k 123 (125)
T 2ec1_A 111 DADELHKILLEKK 123 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 8888888888875
No 22
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=43.07 E-value=1.3e+02 Score=24.23 Aligned_cols=96 Identities=20% Similarity=0.351 Sum_probs=61.0
Q ss_pred ccceeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCC--eEEEEEecCCCCceeeeeeccCCCCCC
Q 024307 6 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKD--RCEIRLEDPNSGELFAACFVQPGQREN 83 (269)
Q Consensus 6 ~d~iE~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLrVv~~g~--~~~I~LED~~tGeLFA~cpv~pg~~~~ 83 (269)
|..|++||.++.-|.||+.=+. ..+|. +.--.|.|=|+++.. -+.|.|--.++..+ - -++.++ .
T Consensus 20 Dp~I~~Il~~a~~v~vY~f~~~-------~~~W~--K~~iEGtLFv~~R~~P~~~~iVlNR~~~~n~-~-~~i~~~---~ 85 (127)
T 2qkl_A 20 YPEIESIIDIASHVAVYQFDVG-------SQKWL--KTSIEGTFFLVKDQRARVGYVILNRNSPENL-Y-LFINHP---S 85 (127)
T ss_dssp CTTEEEEEEEEEEEEEECC-------------CC--EEEEEEEEEEEEETTCCEEEEEEESSSSCCE-E-EEECSG---G
T ss_pred CchHHHHhccCCeEEEEEecCC-------CCceE--EcCcEEEEEEEEccCCceEEEEEcCCCCcCe-e-EecCCC---c
Confidence 3569999999999999998764 33695 666899999999872 35566666555443 2 234333 2
Q ss_pred ceeEeccccceEEEEEecCCCCeEEEeeeecccCcccch
Q 024307 84 SVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDF 122 (269)
Q Consensus 84 aVE~V~DSSRYFVLRV~D~~GR~AfIGiGF~ERsdAFDF 122 (269)
-+| +-| .|..+|.. +.-..||.|-+-.|.=..
T Consensus 86 ~~e-~~~--~~l~~r~~----~~~i~GiWf~~~~d~~~i 117 (127)
T 2qkl_A 86 NVH-LVD--RYLIHRTE----NQHVVGLWMFDPNDMSRI 117 (127)
T ss_dssp GEE-EET--TEEEEEET----TTEEEEEEESSTHHHHHH
T ss_pred eEE-EeC--CEEEEEcC----CCcEEEEEEEchHHHHHH
Confidence 344 333 37777753 366999999886554333
No 23
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.29 E-value=40 Score=24.48 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=15.3
Q ss_pred cCCCCCCCceEEEecCCC
Q 024307 157 VNHRLKEGETIRINVKPK 174 (269)
Q Consensus 157 ~D~sLKEGeTI~Ini~~k 174 (269)
.||.+++|.||++-+...
T Consensus 62 ~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 62 SSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp TTTTCCTTEEEEEECCCC
T ss_pred HHcCCCCCCEEEEEECCC
Confidence 479999999999988653
No 24
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus} SCOP: b.55.1.2 PDB: 1m7e_A
Probab=36.25 E-value=1.3e+02 Score=24.47 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=45.6
Q ss_pred eEEEEEEEeCCeEEEEEecCCCCceeeeeeccCCCCCCceeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhh
Q 024307 46 TGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVA 125 (269)
Q Consensus 46 tGRLrVv~~g~~~~I~LED~~tGeLFA~cpv~pg~~~~aVE~V~DSSRYFVLRV~D~~GR~AfIGiGF~ERsdAFDFnva 125 (269)
.-.|.|...| |+|.|+.|++++...|+.- ..-.+.. ....|||..=..|+ +.|+|.. |.....|=.-..+
T Consensus 61 ~V~L~IS~~G----I~v~d~~tk~~~~~~~l~~-ISfca~d--~~d~r~FafI~k~~-~~h~c~v--f~s~~~A~~I~~t 130 (160)
T 1p3r_A 61 RIWVNISLSG----IKIIDEKTGVIEHEHPVNK-ISFIARD--VTDNRAFGYVCGGE-GQHQFFA--IKTGQQAEPLVVD 130 (160)
T ss_dssp EEEEEEETTE----EEEEETTTCCEEEEECGGG-EEEEEEC--TTCTTEEEEEESST-TCEEEEE--EEESSCSHHHHHH
T ss_pred EEEEEEECCe----EEEEECCCCeEEEecccCe-EEEEecC--CCCCcEEEEEEecC-CEEEEEE--EccHHHHHHHHHH
Confidence 4556665544 6888999999999888731 0001111 12248998877876 6999885 5544445554455
Q ss_pred hhhHHH
Q 024307 126 LSDHEK 131 (269)
Q Consensus 126 LqD~~K 131 (269)
|-..+.
T Consensus 131 igqAF~ 136 (160)
T 1p3r_A 131 LKDLFQ 136 (160)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 25
>3v2d_4 50S ribosomal protein L31; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 2xqe_4 ...
Probab=35.75 E-value=18 Score=26.99 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=28.1
Q ss_pred ceeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCCeEE
Q 024307 8 SLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCE 59 (269)
Q Consensus 8 ~iE~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtGRLrVv~~g~~~~ 59 (269)
+|..|.+++.-=.+|.+ +++..-.+.+=|....|.|||.-|++.++.+++
T Consensus 8 ~Y~~v~v~c~~g~~f~t--~ST~~~i~vdi~S~~HPFyTGkqk~vdt~GRVe 57 (71)
T 3v2d_4 8 KLVPARIICGCGNVIET--YSTKPEIYVEVCSKCHPFYTGQQRFVDTEGRVE 57 (71)
T ss_dssp CCEEEEEEETTSCEEEE--EESSSEEEESCCTTTSSSSSCC-----------
T ss_pred CCeEEEEEECCCCEEEe--eeeccCEEEEecCCCCCCCCCCEEEEcccCcHH
Confidence 47778877764455554 233345889999888999999999999876653
No 26
>3efy_A CIF (cell cycle inhibiting factor); bacteria, virulence factor, type III secretion, E. coli, plasmid; 1.70A {Escherichia coli}
Probab=33.17 E-value=27 Score=30.38 Aligned_cols=22 Identities=36% Similarity=0.730 Sum_probs=18.8
Q ss_pred eccccceEEEEEecCCCCeEEE
Q 024307 88 VLDSSRYFVLKIEDGTGKHAFI 109 (269)
Q Consensus 88 V~DSSRYFVLRV~D~~GR~AfI 109 (269)
+++|+.-||+||.|+.=.||||
T Consensus 48 ~l~s~knyV~~VNDgrLGH~fl 69 (195)
T 3efy_A 48 CMPECKSFVLRVNDGALGHAYI 69 (195)
T ss_dssp TCCTTSEEEEEEEETTTTEEEE
T ss_pred hhhcccCEEEEEcCCCcceeEE
Confidence 6899999999999987557776
No 27
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=31.21 E-value=93 Score=24.58 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=45.4
Q ss_pred CCeEEEEEecCCCCceeeeeeccCCCCCCceeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHH
Q 024307 55 KDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEK 131 (269)
Q Consensus 55 g~~~~I~LED~~tGeLFA~cpv~pg~~~~aVE~V~DSSRYFVLRV~D~~GR~AfIGiGF~ERsdAFDFnvaLqD~~K 131 (269)
.....|+.++-.++++=-.|.++++ +.-.-++--|-- ..|. + -.+|++|.+-.||-.|..+++....
T Consensus 47 ~~~yrIv~~~l~~~~vv~~~~l~~~-----~~y~~~~p~Fh~--w~~~--~-~~~GL~F~se~eA~~F~~~v~~al~ 113 (118)
T 1xod_A 47 GTEFLVHGERLRDKTVVLECVLRRD-----LVYNKVTPTFHH--WRIG--D-KKFGLTFQSPADARAFDRGIRRAIE 113 (118)
T ss_dssp --CCEEEEEETTTCCEEEEEECCTT-----CEEEEEETTEEE--EEET--T-EEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCeEEEEEEEeCC-----cEEEecCCcceE--EEeC--C-EEEEEecCCHHHHHHHHHHHHHHHH
Confidence 3456788888667788889988876 344434443443 4443 2 3499999999999999888776543
No 28
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=30.71 E-value=83 Score=24.56 Aligned_cols=104 Identities=15% Similarity=0.279 Sum_probs=64.8
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeE--EEEEEEe--CCeEEEEEecCCCCceeeeeeccCCCCCCce
Q 024307 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTG--RLRVVSC--KDRCEIRLEDPNSGELFAACFVQPGQRENSV 85 (269)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrAadW~~~~~iwtG--RLrVv~~--g~~~~I~LED~~tGeLFA~cpv~pg~~~~aV 85 (269)
|+.|+. -.++||.+-|.+. + |..... =.| ++.++-. ...-.|+..+-.++++=-.|.++++-
T Consensus 3 e~~i~~-~~A~V~~~d~~~~--~-----W~p~~~-~~g~s~V~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~----- 68 (112)
T 1evh_A 3 EQSICQ-ARAAVMVYDDANK--K-----WVPAGG-STGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGL----- 68 (112)
T ss_dssp EEEEEE-EEEEEEEEETTTT--E-----EEEGGG-CCSCEEEEEEEETTTTEEEEEEEETTTCCEEEEEEECTTC-----
T ss_pred ceeEEE-EEEEEEEEcCCCC--c-----eEECCC-CCCceEEEEEEECCCCEEEEEEEECCCCcEEEeeEecCCc-----
Confidence 666665 4578888876332 3 632110 012 2555554 35677888886677877889887762
Q ss_pred eEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHH
Q 024307 86 ETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKY 132 (269)
Q Consensus 86 E~V~DSSRYFVLRV~D~~GR~AfIGiGF~ERsdAFDFnvaLqD~~K~ 132 (269)
.-.-.+ -|| ..-.|+ | -.+|++|.+-.||=.|.-++++....
T Consensus 69 ~y~~~~-p~F-h~w~~~--~-~~~GLnF~se~eA~~F~~~v~~al~~ 110 (112)
T 1evh_A 69 KYNQAT-QTF-HQWRDA--R-QVYGLNFGSKEDANVFASAMMHALEV 110 (112)
T ss_dssp CCBCCS-SSE-EEEECS--S-CEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEecC-ccc-eeEecC--C-EEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 111122 233 445554 2 59999999999999998888875443
No 29
>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
Probab=29.62 E-value=33 Score=31.07 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=18.9
Q ss_pred EeccccceEEEEEecCCCCeEEE
Q 024307 87 TVLDSSRYFVLKIEDGTGKHAFI 109 (269)
Q Consensus 87 ~V~DSSRYFVLRV~D~~GR~AfI 109 (269)
.+++|+.-||+||.|+.=.||||
T Consensus 115 ~~L~s~kNyV~~VNDgrLGH~fl 137 (261)
T 4fbj_A 115 DQLSSAKNYVALVNDRRLGHMFL 137 (261)
T ss_dssp GGSCTTCEEEEEEEETTTTEEEE
T ss_pred hhhhcccCEEEEEcCCCcceeEE
Confidence 36899999999999987557765
No 30
>1n7v_A Adsorption protein P2; bacteriophage PRD1, viral receptor-binding, beta-propeller, proline-rich, antibiotic-resistance, viral protein; 2.20A {Enterobacteria phage PRD1} SCOP: b.126.1.1 PDB: 1n7u_A
Probab=28.92 E-value=25 Score=33.84 Aligned_cols=64 Identities=27% Similarity=0.292 Sum_probs=37.5
Q ss_pred eEEEEEEEeCCeEEEEEecCCCCceeeeeecc-CC----CCCCceeEe--------ccccceEEEEEecCC-CCeEEEee
Q 024307 46 TGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ-PG----QRENSVETV--------LDSSRYFVLKIEDGT-GKHAFIGL 111 (269)
Q Consensus 46 tGRLrVv~~g~~~~I~LED~~tGeLFA~cpv~-pg----~~~~aVE~V--------~DSSRYFVLRV~D~~-GR~AfIGi 111 (269)
.|||.-.--.-.++|-| ||+.|+-||-+ -. ..+.+-|-. .=||-||.+--.|+- |-++|||.
T Consensus 296 agrlvp~v~di~vdifl----tgkff~l~pp~ritnnyfad~~v~e~tvt~gn~~~~~~~~y~~vy~tdg~g~a~~fi~~ 371 (555)
T 1n7v_A 296 AGRLVPYVEDIAVDIFL----TGKFFTLNPPLRITNNYFADDEVKENTVTIGNYTTTLSSAYYAVYKTDGYGGATCFIAS 371 (555)
T ss_dssp EECCEEEEEEEEEEEEE----EEEEEEECCCEEEEEEECCTTTCBCCEEEESCCCSEEEECSEEEEEECSSSEEEEEEES
T ss_pred hhcccchhhheeEEEEe----ecceeeecCceeeccccccccccccceEEecceecchhheeeEEEeccCCCceeEEEec
Confidence 45553332233445554 79999999731 00 001222222 237789999888875 56999998
Q ss_pred ee
Q 024307 112 GF 113 (269)
Q Consensus 112 GF 113 (269)
|=
T Consensus 372 gg 373 (555)
T 1n7v_A 372 GG 373 (555)
T ss_dssp SS
T ss_pred CC
Confidence 73
No 31
>4f8c_A Cycle inhibiting factor; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.95A {Yersinia pseudotuberculosis}
Probab=27.95 E-value=36 Score=30.99 Aligned_cols=22 Identities=32% Similarity=0.706 Sum_probs=18.9
Q ss_pred eccccceEEEEEecCCCCeEEE
Q 024307 88 VLDSSRYFVLKIEDGTGKHAFI 109 (269)
Q Consensus 88 V~DSSRYFVLRV~D~~GR~AfI 109 (269)
+++|+.-||+||.|+.=.||||
T Consensus 142 ~L~s~KnyV~~VNDgrLGH~fl 163 (275)
T 4f8c_A 142 SLPAHKNFILRVNDGGLGHAYV 163 (275)
T ss_dssp TCCTTSEEEEEEEETTTTEEEE
T ss_pred hhhcccCEEEEEcCCCcceeEE
Confidence 6899999999999987557776
No 32
>3eir_A Putative ATP/GTP binding protein; papain-like fold, unknown function; 2.10A {Burkholderia pseudomallei} PDB: 3eit_A 3gqm_A 4hcp_A 4hcn_A
Probab=26.46 E-value=40 Score=30.68 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=20.5
Q ss_pred eccccceEEEEEecCCCCeEEE-eeeeccc
Q 024307 88 VLDSSRYFVLKIEDGTGKHAFI-GLGFNER 116 (269)
Q Consensus 88 V~DSSRYFVLRV~D~~GR~AfI-GiGF~ER 116 (269)
+++|+.-||+||.|+.=.|||| -|==.++
T Consensus 146 ~L~s~KNyV~~VNDgrLGH~flIDiPa~~~ 175 (281)
T 3eir_A 146 TLDSHKNYVVIVNDGRLGHKFLIDLPALTQ 175 (281)
T ss_dssp TSCTTSEEEEEEEETTTTEEEEEEECCC--
T ss_pred hhhcccCEEEEEcCCCcceeEEEeccCCCC
Confidence 5899999999999987456664 4444444
No 33
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=24.76 E-value=33 Score=23.41 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=13.1
Q ss_pred CCCCCCCceEEEecC
Q 024307 158 NHRLKEGETIRINVK 172 (269)
Q Consensus 158 D~sLKEGeTI~Ini~ 172 (269)
+++|++|+.|.|--+
T Consensus 26 eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 26 FLRLNPGDIVELTKA 40 (70)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred cCCcCCCCEEEEEeC
Confidence 699999999998765
No 34
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=23.37 E-value=46 Score=23.10 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=11.3
Q ss_pred CCCCCCCceEEEe
Q 024307 158 NHRLKEGETIRIN 170 (269)
Q Consensus 158 D~sLKEGeTI~In 170 (269)
++||++|+.|.|-
T Consensus 20 ~Ls~~~Gd~i~v~ 32 (60)
T 2lx7_A 20 GLRFAAGELITLL 32 (60)
T ss_dssp CCCCCTTCEEEBS
T ss_pred CccCCCCCEEEEe
Confidence 4899999999874
No 35
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=22.45 E-value=58 Score=21.05 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=13.2
Q ss_pred CCCCCCCceEEEecCC
Q 024307 158 NHRLKEGETIRINVKP 173 (269)
Q Consensus 158 D~sLKEGeTI~Ini~~ 173 (269)
+++|++|+.|.|--..
T Consensus 16 eLs~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 16 EISIDPGDIITVIRGD 31 (54)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CccCCCCCEEEEEEec
Confidence 6999999999986543
No 36
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=22.16 E-value=41 Score=22.21 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=12.7
Q ss_pred CCCCCCCceEEEecC
Q 024307 158 NHRLKEGETIRINVK 172 (269)
Q Consensus 158 D~sLKEGeTI~Ini~ 172 (269)
+++|++|+.|.|--.
T Consensus 20 eLs~~~Gd~i~v~~~ 34 (59)
T 2g6f_X 20 ELSFSKGDVIHVTRV 34 (59)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCCCCCEEEEEEe
Confidence 699999999998653
No 37
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=21.63 E-value=42 Score=23.53 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.5
Q ss_pred cCCCCCCCceEEEecC
Q 024307 157 VNHRLKEGETIRINVK 172 (269)
Q Consensus 157 ~D~sLKEGeTI~Ini~ 172 (269)
-+++|++|+.|.|--+
T Consensus 33 ~eLsf~~Gd~i~v~~~ 48 (78)
T 1k1z_A 33 GFLRLNPGDIVELTKA 48 (78)
T ss_dssp CCCCBCTTCEEEEEEC
T ss_pred CccCCCCCCEEEEEEc
Confidence 4699999999998664
No 38
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=21.61 E-value=43 Score=22.03 Aligned_cols=15 Identities=27% Similarity=0.197 Sum_probs=12.8
Q ss_pred CCCCCCCceEEEecC
Q 024307 158 NHRLKEGETIRINVK 172 (269)
Q Consensus 158 D~sLKEGeTI~Ini~ 172 (269)
+++|++|+.|+|--.
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (58)
T 2bz8_A 17 ELTISVGEIITNIRK 31 (58)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred EeeECCCCEEEEEEe
Confidence 699999999998654
No 39
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=21.56 E-value=41 Score=23.56 Aligned_cols=14 Identities=14% Similarity=0.461 Sum_probs=12.1
Q ss_pred CCCCCCCceEEEec
Q 024307 158 NHRLKEGETIRINV 171 (269)
Q Consensus 158 D~sLKEGeTI~Ini 171 (269)
++||++|+.|.|-=
T Consensus 22 ELs~~~Gd~i~v~~ 35 (65)
T 2lj0_A 22 ELELRDGDIVDVME 35 (65)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred CcCCCCCCEEEEeE
Confidence 69999999999853
No 40
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain, phosphoprotein, signaling protei structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Probab=21.24 E-value=3.3e+02 Score=22.02 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=42.4
Q ss_pred EEEecCCCCceeeeeeccCCCCCCceeEeccccceEEEEEecCCCCeEEEeeeecccCc-ccchhhhhhhHHHHH
Q 024307 60 IRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNE-AFDFNVALSDHEKYV 133 (269)
Q Consensus 60 I~LED~~tGeLFA~cpv~pg~~~~aVE~V~DSSRYFVLRV~D~~GR~AfIGiGF~ERsd-AFDFnvaLqD~~K~l 133 (269)
|+|.|+.|++++..+|+.- ..-.++ -.+.-|+|+.=..|+.. .-|.=--|.-..+ |=+...+|...++..
T Consensus 89 I~l~d~~t~~~l~~~~i~~-ISf~~~--d~~~~~~FafIar~~~~-~~~~CHvF~c~~~~A~~I~~aIgqAF~~a 159 (168)
T 3f0w_A 89 LRVVDDKTKDLLVDQTIEK-VSFCAP--DRNLDKAFSYICRDGTT-RRWICHCFLALKDSGERLSHAVGCAFAAC 159 (168)
T ss_dssp EEEEETTTCCEEEEEEGGG-EEEEEE--CSSCTTEEEEEEEETTT-TEEEEEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCeEEEeeecCc-EEEEec--CCCCCcEEEEEEecCCC-CcEEEEEEEeccchHHHHHHHHHHHHHHH
Confidence 7889999999999998731 000111 12456899987777542 2233344443322 777777777766543
No 41
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=21.09 E-value=44 Score=22.36 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=12.9
Q ss_pred CCCCCCCceEEEecC
Q 024307 158 NHRLKEGETIRINVK 172 (269)
Q Consensus 158 D~sLKEGeTI~Ini~ 172 (269)
+++|++|+.|.|--+
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (64)
T 2jte_A 22 ELTFREGEIIHLISK 36 (64)
T ss_dssp BCCBCTTCEEEEEES
T ss_pred ccCCCCCCEEEEEEC
Confidence 699999999999654
No 42
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=20.71 E-value=46 Score=21.74 Aligned_cols=15 Identities=40% Similarity=0.601 Sum_probs=12.8
Q ss_pred CCCCCCCceEEEecC
Q 024307 158 NHRLKEGETIRINVK 172 (269)
Q Consensus 158 D~sLKEGeTI~Ini~ 172 (269)
+++|++|+.|.|--.
T Consensus 19 eLs~~~Gd~i~v~~~ 33 (58)
T 2drm_A 19 ELTFKEGDTIIVHQK 33 (58)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CcCCCCCCEEEEEEe
Confidence 599999999998654
No 43
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=20.59 E-value=46 Score=22.11 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=12.9
Q ss_pred CCCCCCCceEEEecC
Q 024307 158 NHRLKEGETIRINVK 172 (269)
Q Consensus 158 D~sLKEGeTI~Ini~ 172 (269)
+++|++|+.|.|--.
T Consensus 19 eLs~~~Gd~i~v~~~ 33 (61)
T 1y0m_A 19 ELTFTKSAIIQNVEK 33 (61)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CcCCcCCCEEEEEEe
Confidence 699999999998654
No 44
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=20.46 E-value=46 Score=22.00 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=12.8
Q ss_pred CCCCCCCceEEEecC
Q 024307 158 NHRLKEGETIRINVK 172 (269)
Q Consensus 158 D~sLKEGeTI~Ini~ 172 (269)
+++|++|+.|.|--.
T Consensus 21 eLs~~~Gd~i~v~~~ 35 (60)
T 2xmf_A 21 ELSFNANDIIDIIKE 35 (60)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCCCCCEEEEEEe
Confidence 589999999998654
No 45
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=20.32 E-value=67 Score=21.04 Aligned_cols=15 Identities=13% Similarity=-0.071 Sum_probs=12.7
Q ss_pred CCCCCCCceEEEecC
Q 024307 158 NHRLKEGETIRINVK 172 (269)
Q Consensus 158 D~sLKEGeTI~Ini~ 172 (269)
+++|++|+.|.|--.
T Consensus 16 eLs~~~Gd~i~v~~~ 30 (58)
T 1jo8_A 16 ELTFVENDKIINIEF 30 (58)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CcccCCCCEEEEEEe
Confidence 699999999998653
No 46
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=20.24 E-value=48 Score=22.44 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=13.3
Q ss_pred CCCCCCCceEEEecCC
Q 024307 158 NHRLKEGETIRINVKP 173 (269)
Q Consensus 158 D~sLKEGeTI~Ini~~ 173 (269)
+++|++|+.|.|--..
T Consensus 5 eLs~~~Gd~i~v~~~~ 20 (63)
T 1tuc_A 5 EVTMKKGDILTLLNST 20 (63)
T ss_dssp CCCBCTTCEEEEEECC
T ss_pred ccCCCCCCEEEEEEec
Confidence 6899999999986643
No 47
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=20.19 E-value=65 Score=21.54 Aligned_cols=15 Identities=13% Similarity=0.333 Sum_probs=12.8
Q ss_pred CCCCCCCceEEEecC
Q 024307 158 NHRLKEGETIRINVK 172 (269)
Q Consensus 158 D~sLKEGeTI~Ini~ 172 (269)
+++|++|+.|.|--.
T Consensus 37 eLsf~~Gd~i~v~~~ 51 (62)
T 1g2b_A 37 EVTMKKGDILTLLNS 51 (62)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred ccCCCCCCEEEEEEe
Confidence 589999999998654
No 48
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=20.02 E-value=47 Score=22.61 Aligned_cols=14 Identities=7% Similarity=0.261 Sum_probs=12.3
Q ss_pred CCCCCCCceEEEec
Q 024307 158 NHRLKEGETIRINV 171 (269)
Q Consensus 158 D~sLKEGeTI~Ini 171 (269)
+++|++|+.|.|--
T Consensus 23 eLsf~~Gd~i~v~~ 36 (68)
T 1tg0_A 23 DLNFEKDQEIIVTS 36 (68)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred CCCCCCCCEEEEEE
Confidence 69999999998864
Done!