Query 024309
Match_columns 269
No_of_seqs 228 out of 1555
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:37:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0873 C-4 sterol methyl oxid 100.0 2.9E-59 6.3E-64 407.6 20.1 256 3-261 9-270 (283)
2 KOG0874 Sphingolipid hydroxyla 100.0 6.3E-37 1.4E-41 256.3 1.3 242 12-259 7-274 (287)
3 COG3000 ERG3 Sterol desaturase 100.0 9.3E-34 2E-38 253.3 20.9 149 104-254 91-240 (271)
4 PLN02869 fatty aldehyde decarb 100.0 7.1E-32 1.5E-36 256.9 16.9 163 101-267 118-293 (620)
5 KOG0872 Sterol C5 desaturase [ 100.0 9.8E-28 2.1E-32 207.1 12.8 143 103-253 123-265 (312)
6 PF04116 FA_hydroxylase: Fatty 99.8 1.4E-19 3E-24 140.5 8.0 111 113-225 2-114 (114)
7 PLN02434 fatty acid hydroxylas 99.3 1.6E-11 3.5E-16 106.9 11.1 136 107-253 82-232 (237)
8 KOG0539 Sphingolipid fatty aci 98.3 1.4E-06 3.1E-11 73.7 6.6 135 108-252 83-234 (240)
9 PRK07424 bifunctional sterol d 98.2 5.5E-06 1.2E-10 78.3 8.5 132 111-249 15-174 (406)
10 PLN02601 beta-carotene hydroxy 98.2 4.4E-05 9.6E-10 67.0 13.3 36 111-148 139-175 (303)
11 PF10520 Kua-UEV1_localn: Kua- 96.0 0.016 3.4E-07 48.7 5.6 60 194-256 102-164 (178)
12 KOG3011 Ubiquitin-conjugating 86.2 1.7 3.7E-05 38.3 5.4 138 104-248 105-263 (293)
13 cd03510 Rhizobitoxine-FADS-lik 78.8 14 0.0003 30.7 8.1 15 134-148 71-85 (175)
14 cd03514 CrtR_beta-carotene-hyd 77.8 23 0.00049 30.3 9.4 15 134-148 73-87 (207)
15 KOG1600 Fatty acid desaturase 66.3 12 0.00026 34.3 5.0 34 217-250 122-159 (321)
16 cd03505 Delta9-FADS-like The D 64.6 49 0.0011 27.8 8.2 40 99-149 31-70 (178)
17 PLN02434 fatty acid hydroxylas 56.7 18 0.00039 31.8 4.4 44 107-150 165-211 (237)
18 PF10520 Kua-UEV1_localn: Kua- 42.7 1.3E+02 0.0027 25.4 7.1 44 104-147 83-137 (178)
19 COG3239 DesA Fatty acid desatu 38.9 1.3E+02 0.0029 27.8 7.4 14 135-148 114-127 (343)
20 PF08636 Pkr1: ER protein Pkr1 37.1 70 0.0015 23.0 4.0 13 1-13 1-13 (75)
21 COG5454 Predicted secreted pro 33.1 2E+02 0.0042 21.1 6.6 14 84-97 64-77 (89)
22 PF00487 FA_desaturase: Fatty 32.1 76 0.0016 26.4 4.4 13 215-227 216-228 (257)
23 COG4818 Predicted membrane pro 27.2 67 0.0014 24.2 2.7 21 28-48 8-28 (105)
24 KOG1600 Fatty acid desaturase 26.4 2.7E+02 0.0058 25.7 6.9 38 101-149 97-134 (321)
25 cd01060 Membrane-FADS-like The 24.5 1.3E+02 0.0029 22.3 4.2 18 131-148 47-64 (122)
26 PLN02601 beta-carotene hydroxy 22.9 1.8E+02 0.0038 26.3 4.9 39 109-147 210-261 (303)
27 PF01534 Frizzled: Frizzled/Sm 22.5 3.2E+02 0.007 25.2 6.9 29 23-51 179-207 (328)
No 1
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=2.9e-59 Score=407.58 Aligned_cols=256 Identities=52% Similarity=1.058 Sum_probs=240.2
Q ss_pred hHHHHHHHHHHhhcC-C-ceehhHHHHHHHHHHHHHhhHHHHHhc---ccccccccccCCCCCCCh-HHHHHHHHHHHHH
Q 024309 3 SIIESGWRYLITHFS-D-FQLACLGSFFLHESIFFLAGLPFIYLE---RAGWLSKYKIQTKNNSPA-AQEKCITRLLLYH 76 (269)
Q Consensus 3 ~~~~~~W~~~~~~~~-~-~~~~~~~~~~~~~~~y~~~~l~f~~~~---~~~~~~~~kiq~~~~~~~-~~~~~i~~~~~~~ 76 (269)
.++|++|+.++++++ | ..+...|+++++.++||+.|++|.++| ++++++|||||++++++. +.++|++.++.||
T Consensus 9 nflq~~W~~l~~~f~~d~~l~~~~~~~~~~~~~y~l~~lpf~~iD~t~~~~~~~rYKIQp~k~~s~~~~~kc~k~vl~n~ 88 (283)
T KOG0873|consen 9 NFLQPLWDYLYNTFSGDFLLLCVGGPFIVHELVYWLFCLPFIFIDVTNRPPFLRRYKIQPKKNPSLSKQLKCLKVVLLNH 88 (283)
T ss_pred HHHHHHHHHHHhhCCCceEEEeechhHHHHHHHHHHhcchheEeecccCcchhhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 489999999999998 4 455567779999999999999999999 499999999999988644 4589999999999
Q ss_pred HhhHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhccCCCCCccccccc
Q 024309 77 FGVNLPVMIFSYPVFKYMGMQSSLPLPSWKVVLSQIIFYFILEDFVFYWGHRILHTKWLYKHVHSVHHEYATPFGLTSEY 156 (269)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~g~~~~~~lp~~~~~~~~~~~~~l~~D~~~Y~~HRl~H~~~ly~~~H~~HH~~~~p~~~~a~~ 156 (269)
++++.|++.+.+++.++.|.+.+.++|++.+++.|+++++++.|+++||.||++|.+++||.+||+||++++|.+.+|.|
T Consensus 89 ~~v~~p~~~~~y~~~~~~~~~~~~plPt~~~~l~~l~i~~liEd~~fY~~HRL~H~~~~Yk~iHKvHHe~taPf~~sa~Y 168 (283)
T KOG0873|consen 89 FLVVLPLTLVSYPFVEWFGLPSGAPLPSWKEMLAQLVVFFLIEDIGFYWSHRLFHHKWLYKYIHKVHHEYTAPFGLSAEY 168 (283)
T ss_pred HHHHhhHHHHhHHHHHHhCCCcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhhhcccCchhHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhcCcccCCCCccccccccCchhhhHhhcccCCCCccccc
Q 024309 157 AHPAEILFLGFATIVGPAITGPHLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHRLLYTKSGNYSS 236 (269)
Q Consensus 157 ~hp~E~ll~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~~~~~~~~~~H~~HH~~~~~~~~Nyg~ 236 (269)
+||+|.++.+++++.++++++.|+.+.++|++++.+.++..||||++||.+.+.+|+.+++++||.||..+ .+||++
T Consensus 169 aHp~E~~~lg~~~~~~p~~~~~H~~t~wiw~~l~i~~t~~~HsGY~fPwsl~~~~pfy~ga~~HD~HH~~f---~~n~~~ 245 (283)
T KOG0873|consen 169 AHPLEHLFLGLGTVMGPALLCGHVITLWIWIALRILETVESHSGYDFPWSLSKLIPFYGGAEHHDYHHLVF---IGNFAS 245 (283)
T ss_pred cCHHHHHHcCChhhhhhHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCccccccCcccCCCcccchhhhhc---cccccc
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999 999999
Q ss_pred cchhhhhhcCCChhhHHHHHhhhcC
Q 024309 237 TFVYMDWIFGTDKGYRKLKALKSFG 261 (269)
Q Consensus 237 ~~~~wD~lfGT~~~~~~~~~~~~~~ 261 (269)
.|+.|||++||+..+++.++.+++.
T Consensus 246 ~f~~~D~i~GTd~~~~~~k~~~~~~ 270 (283)
T KOG0873|consen 246 VFGYLDRIHGTDSTYRALKELKEAI 270 (283)
T ss_pred hhHHHHHHhccCccHhhhhhHHHHH
Confidence 9999999999999999888766543
No 2
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=100.00 E-value=6.3e-37 Score=256.32 Aligned_cols=242 Identities=26% Similarity=0.420 Sum_probs=178.9
Q ss_pred HHhhcCCceehhHHHHHHHHHHHHHhhHHHHHhcccccccccccCCCCCCChHH----HHHHHHHHHHHHhhHHHHHHHH
Q 024309 12 LITHFSDFQLACLGSFFLHESIFFLAGLPFIYLERAGWLSKYKIQTKNNSPAAQ----EKCITRLLLYHFGVNLPVMIFS 87 (269)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~y~~~~l~f~~~~~~~~~~~~kiq~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~ 87 (269)
++...+|..+.+ +.+.++||+.+..|...+..+.++||||.++.++.++. ...++.+++.|++..+...++.
T Consensus 7 ml~~~sd~~l~l----vaPvvvYWv~Sg~f~~yi~l~~~ekYRiHp~ee~a~rN~vskmaVvk~VllQq~~q~iVgiil~ 82 (287)
T KOG0874|consen 7 MLFEMSDEVLGL----VAPVVVYWVYSGIFHVYITLHSLEKYRIHPKEEEAERNLVSKMAVVKGVLLQQIIQAIVGIILF 82 (287)
T ss_pred hccccchhHhhh----hhHHHHHhhhcCCceEEEEechhhhhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHHHhheE
Confidence 344455555544 45668899988888877777788999999887653322 2334555656655433222221
Q ss_pred H------HH---HHHhCCCCCC--CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHhcCc-chhhhhhhhhccCCC
Q 024309 88 Y------PV---FKYMGMQSSL--PLP--------SWKVVLSQIIFYFILEDFVFYWGHRILHT-KWLYKHVHSVHHEYA 147 (269)
Q Consensus 88 ~------~~---~~~~g~~~~~--~lp--------~~~~~~~~~~~~~l~~D~~~Y~~HRl~H~-~~ly~~~H~~HH~~~ 147 (269)
. .. -+...++.++ .+| +....+.|++.++++.|.|+|++||.||. +.+|+.+|++||+-.
T Consensus 83 ~feg~~~~~~ea~qm~k~~a~~~r~ip~~a~~~~y~~~v~A~q~f~aflviDtWQYF~HRymH~NK~LYk~iHs~HHrL~ 162 (287)
T KOG0874|consen 83 HFEGSDATADEAQQMWKLRADLPRIIPDAAIYYGYSFLVLARQFFAAFLVIDTWQYFLHRYMHMNKFLYKHIHSQHHRLI 162 (287)
T ss_pred EeeCCCCChHHHHHHHHhhccccccCCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhceeEe
Confidence 0 00 0001111111 122 34567889999999999999999999997 899999999999999
Q ss_pred CCcccccccCChHHHHHHHHH-HHHHHHhhcchHHHHHHHHHHHHHHHHHhhcCcccCCCCccccccccCchhhhHhhcc
Q 024309 148 TPFGLTSEYAHPAEILFLGFA-TIVGPAITGPHLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHRL 226 (269)
Q Consensus 148 ~p~~~~a~~~hp~E~ll~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~~~~~~~~~~H~~HH~~ 226 (269)
.|++..|.|+||+|.++.... ..+..++.|.++.+..+++.+.++.++.+||||-+|.+|..+. +-+++++||+||+.
T Consensus 163 VPYayGALyNhP~EGllLDT~G~gla~l~sglspr~aiifFtfaTiKTVDDHCGy~lP~dpfqm~-F~NNa~YHDiHHQ~ 241 (287)
T KOG0874|consen 163 VPYAYGALYNHPVEGLLLDTIGGGLAFLLSGLSPRTAIIFFTFATIKTVDDHCGYWLPGDPFQMF-FPNNAAYHDIHHQL 241 (287)
T ss_pred cchhhhhhhcCcchhhhhhhhchHHHHHHcCCCccceEEEEEeeeeeeeccccccccCCCceeEe-ccCCchhhhhhhhh
Confidence 999999999999999998754 3344556788888888888899999999999999999887653 55889999999998
Q ss_pred cCCCCccccc-cchhhhhhcCCChhhHHHHHhhh
Q 024309 227 LYTKSGNYSS-TFVYMDWIFGTDKGYRKLKALKS 259 (269)
Q Consensus 227 ~~~~~~Nyg~-~~~~wD~lfGT~~~~~~~~~~~~ 259 (269)
. +.+.||+. +|++|||++|||.++...++.++
T Consensus 242 y-G~k~NFsQPFFtfWD~ilgTYmp~~~E~~~ek 274 (287)
T KOG0874|consen 242 Y-GTKYNFSQPFFTFWDRILGTYMPYSLEKRLEK 274 (287)
T ss_pred h-ccccccCCcHHHHHHHHHhhcCCchhcccccc
Confidence 7 44799996 99999999999998877554433
No 3
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=100.00 E-value=9.3e-34 Score=253.29 Aligned_cols=149 Identities=26% Similarity=0.408 Sum_probs=134.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhccCCCCCcccccccCChHHHHHHHHHHHHHHHhhcchHHHH
Q 024309 104 SWKVVLSQIIFYFILEDFVFYWGHRILHTKWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLMTL 183 (269)
Q Consensus 104 ~~~~~~~~~~~~~l~~D~~~Y~~HRl~H~~~ly~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~~~~~~~~l~g~~~~~~ 183 (269)
....++.++++++++.|+++||.||+.|+.+++|++|++||+..+|+++++.++||+|.++......+++.++|.++.++
T Consensus 91 ~~~~~~l~~~~~~~~~D~~~Y~~HR~~H~~~~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~~~~~~~l~~~~~~~~ 170 (271)
T COG3000 91 GPLPFALQLLLAFLFLDLGYYWAHRLLHRVPLLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFLGLLPLLLLGLSPVAV 170 (271)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCcccCCchhhhhcChHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 34566889999999999999999999999999999999999999999999999999999999888888888899999999
Q ss_pred HHHHHHHHHHHHHhhcCcccCCCCccccc-cccCchhhhHhhcccCCCCccccccchhhhhhcCCChhhHHH
Q 024309 184 WLWMVLRVLETVEAHCGYHFPWSLSNFIP-LYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYRKL 254 (269)
Q Consensus 184 ~~~~~~~~~~~~~~Hsg~~~p~~~~~~~~-~~~~~~~H~~HH~~~~~~~~Nyg~~~~~wD~lfGT~~~~~~~ 254 (269)
.++..+..+.++++|||++.| .+.+++. ++++|++|++||++++ .++|||..+++|||+|||+..+++.
T Consensus 171 ~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~v~~~p~~H~lHH~~~~-~~~Nyg~~~~~WDrlFGT~~~~~~~ 240 (271)
T COG3000 171 ALLFIFLLFWAVLIHSNLDLP-LPLGWLRYVFNTPRHHRLHHSKDP-YDKNYGVTLTFWDRLFGTYHPPDER 240 (271)
T ss_pred HHHHHHHHHHHHHHhcCcccc-CCcccceeeecCchHHHHhccCCC-CCCcchhhhHHHHHHcccCCCCccc
Confidence 999999999999999999987 5545443 6789999999999984 3699999999999999999877654
No 4
>PLN02869 fatty aldehyde decarbonylase
Probab=99.98 E-value=7.1e-32 Score=256.93 Aligned_cols=163 Identities=26% Similarity=0.451 Sum_probs=123.3
Q ss_pred CCCCHH--HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhccCCCCCcccccccCChH-HHHHHHHH---HHHHHH
Q 024309 101 PLPSWK--VVLSQIIFYFILEDFVFYWGHRILHTKWLYKHVHSVHHEYATPFGLTSEYAHPA-EILFLGFA---TIVGPA 174 (269)
Q Consensus 101 ~lp~~~--~~~~~~~~~~l~~D~~~Y~~HRl~H~~~ly~~~H~~HH~~~~p~~~~a~~~hp~-E~ll~~~~---~~~~~~ 174 (269)
.+|.|. .++..+++.+++.|+++||+||++|++++||++|++||++.+|+++++. .||+ |.+...+. +++...
T Consensus 118 ~~P~W~~~g~l~~~Llhv~~~Df~fYW~HRllH~~~LYwr~HkvHHss~~~~P~Ts~-~HP~~E~L~y~ll~~IPLllli 196 (620)
T PLN02869 118 HMPLWRTDGVLITILLHMGPVEFLYYWLHRALHHHYLYSRYHSHHHSSIVTEPITSV-IHPFAEHIAYFLLFAIPLLTTI 196 (620)
T ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhccCCCCCCchhhh-cCcHHHHHHHHHHHHHHHHHHh
Confidence 455553 4567778888889999999999999999999999999999999999886 7987 54443322 222222
Q ss_pred hhc-chHHHHHHHHHHHHHHHHHhhcCccc-CCCCccccc----cccCchhhhHhhcccCCCCccccccchhhhhhcCCC
Q 024309 175 ITG-PHLMTLWLWMVLRVLETVEAHCGYHF-PWSLSNFIP----LYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTD 248 (269)
Q Consensus 175 l~g-~~~~~~~~~~~~~~~~~~~~Hsg~~~-p~~~~~~~~----~~~~~~~H~~HH~~~~~~~~Nyg~~~~~wD~lfGT~ 248 (269)
+.| .++.++++++++..+.++++|||+++ |+.+.+..| +++||++|++||++. ++|||.+|++|||+|||+
T Consensus 197 ~~g~~hi~t~~~yli~~~f~~~~gHSN~El~P~~~~~~~ppLkyll~TPsfHdlHHs~f---d~NYGlfF~~WDrLFGT~ 273 (620)
T PLN02869 197 FTGTASIAAFFGYISYIDFMNNMGHCNFELIPKWLFSIFPPLKYLMYTPSYHSLHHTQF---RTNYSLFMPIYDYIYGTM 273 (620)
T ss_pred hcccchHHHHHHHHHHHHHHhcccccCccccccchhccCCcchheecCchHHhHHhccC---CcCcccchHHHHhccCCC
Confidence 333 57788888888888889999999995 655433222 578999999999999 999999999999999998
Q ss_pred hhhHHH-HHhhhcCCCCCCC
Q 024309 249 KGYRKL-KALKSFGIEDDPK 267 (269)
Q Consensus 249 ~~~~~~-~~~~~~~~~~~~~ 267 (269)
.+..+. .++...+.++.||
T Consensus 274 d~~s~~l~e~~~~~~~~~pd 293 (620)
T PLN02869 274 DKSSDTLYEKSLKRPEEIPD 293 (620)
T ss_pred CCCchhHHHHhhcCcccCCC
Confidence 754443 3333343344465
No 5
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=99.95 E-value=9.8e-28 Score=207.06 Aligned_cols=143 Identities=25% Similarity=0.416 Sum_probs=130.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhccCCCCCcccccccCChHHHHHHHHHHHHHHHhhcchHHH
Q 024309 103 PSWKVVLSQIIFYFILEDFVFYWGHRILHTKWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLMT 182 (269)
Q Consensus 103 p~~~~~~~~~~~~~l~~D~~~Y~~HRl~H~~~ly~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~~~~~~~~l~g~~~~~ 182 (269)
-+|...+..++++++..|+..||.||.+|.+.+||+.|+.||.+..++++++.++||++.+++.++-.+-|+++|.|..+
T Consensus 123 ~gw~~~~~~i~~flfF~Df~iYw~HR~lH~~~vy~~LH~~HH~~~~~tpfAslafhpidg~lqaip~~I~~Fi~Plh~~t 202 (312)
T KOG0872|consen 123 YGWFLLFVSIFLFLFFTDFGIYWAHRELHHRGVYKRLHKPHHIWNICTPFASLAFHPIDGFLQAIPYHIYPFIFPLHKVT 202 (312)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcchhhhhhccCchhhhhcCcchhHhhhchhHheeeeecchHHH
Confidence 35777788899999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred HHHHHHHHHHHHHHhhcCcccCCCCccccccccCchhhhHhhcccCCCCccccccchhhhhhcCCChhhHH
Q 024309 183 LWLWMVLRVLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYRK 253 (269)
Q Consensus 183 ~~~~~~~~~~~~~~~Hsg~~~p~~~~~~~~~~~~~~~H~~HH~~~~~~~~Nyg~~~~~wD~lfGT~~~~~~ 253 (269)
++....+..++++..|.|.... ..+.++|+.+|.+||... +.|||.++++|||+|||++.|+.
T Consensus 203 ~L~l~~f~~iwt~~IHd~~~~~-----l~~~ingaahHtvHH~~f---~~NYG~~tilwDrmfgSfr~p~~ 265 (312)
T KOG0872|consen 203 YLSLFTFVNIWTISIHDGIYGS-----LNPPINGAAHHTVHHTYF---DYNYGQYTILWDRMFGSFRAPDH 265 (312)
T ss_pred HHHHHHHHHhHheeeecccccc-----ccCccccccccceeeeeE---ecCCCcEEEeHHhccCcccCccc
Confidence 9988888889999999997643 123789999999999999 99999999999999999887665
No 6
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.80 E-value=1.4e-19 Score=140.53 Aligned_cols=111 Identities=32% Similarity=0.547 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHhcCc-chhhhhhhhhccCCCCCcccccccCChHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHH
Q 024309 113 IFYFILEDFVFYWGHRILHT-KWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGP-AITGPHLMTLWLWMVLR 190 (269)
Q Consensus 113 ~~~~l~~D~~~Y~~HRl~H~-~~ly~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~~~~~~~-~l~g~~~~~~~~~~~~~ 190 (269)
++++++.|+++||+||++|+ +++| ++|+.||+.++|+++++.+.+|+|.++...+..+++ .+.+.++.++.++.++.
T Consensus 2 ~~~~l~~d~~~Y~~HRl~H~~~~l~-~~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T PF04116_consen 2 LLGFLLWDFWEYWMHRLLHKIPFLW-RIHKVHHSPKNPTPLSAFRFHPLEALLLALLPLLLPLLLLPFHALAFLLGIALF 80 (114)
T ss_pred eeeHHHHHHHHHHHHHHHhcCchHH-HHHHHHhCCcccCchHHHHcChHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 46789999999999999995 7777 899999999999999999999999999987766444 55667888888888889
Q ss_pred HHHHHHhhcCcccCCCCccccccccCchhhhHhhc
Q 024309 191 VLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHR 225 (269)
Q Consensus 191 ~~~~~~~Hsg~~~p~~~~~~~~~~~~~~~H~~HH~ 225 (269)
.+.+...|||+.-+..+ ....+..++++|+.||+
T Consensus 81 ~~~~~~~H~~~~~~~~~-~~~~~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 81 YLWYIFIHSGYHHRFPP-RLRYLFVTPRHHDLHHS 114 (114)
T ss_pred HHHHHHhhcCccCCCCC-cchhHhcCHHHHHhhCc
Confidence 99999999999322111 11126789999999995
No 7
>PLN02434 fatty acid hydroxylase
Probab=99.31 E-value=1.6e-11 Score=106.86 Aligned_cols=136 Identities=21% Similarity=0.225 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCcc---h----hhhhhhhhccCCCCCcccccccCChHHHHHHHHHHH-HHHHhhc
Q 024309 107 VVLSQIIFYFILEDFVFYWGHR-ILHTK---W----LYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATI-VGPAITG 177 (269)
Q Consensus 107 ~~~~~~~~~~l~~D~~~Y~~HR-l~H~~---~----ly~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~~~~-~~~~l~g 177 (269)
..+..+++++++..+.+|..|| ++|.+ . +-...|..||.. |.......+-|.-+++...+.. +..++++
T Consensus 82 ~~~~~~~~G~~~wtl~EY~lHRflfH~~p~~~~~~~~hfllHg~HH~~--P~D~~rLv~PP~~~~~l~~~~~~l~~~~~~ 159 (237)
T PLN02434 82 AVVLMVAFGVFIWTLLEYILHRFLFHIKTKSYWGNTAHYLLHGCHHKH--PMDGLRLVFPPAATAILCVPFWNLIALFAT 159 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHhhcC--CCCCCCeecCcHHHHHHHHHHHHHHHHHcc
Confidence 3456678899999999999999 69962 1 223578899966 4443334455665444433222 2222333
Q ss_pred chH------HHHHHHHHHHHHHHHHhhcCcccCCCCccccccccCchhhhHhhcccCCCCccccccchhhhhhcCCChhh
Q 024309 178 PHL------MTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGY 251 (269)
Q Consensus 178 ~~~------~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~~~~~~~~~~H~~HH~~~~~~~~Nyg~~~~~wD~lfGT~~~~ 251 (269)
... ..++.++++....- ..|.+ + |.. ++ .-.--++|..||.++. +.|||.+..+|||+|||..+.
T Consensus 160 ~~~a~~~~~G~l~gYl~Yd~~Hy-~lH~~-~-p~~--~~--~r~lkr~H~~HHfk~~--~~~fGVTs~~wD~vFGT~~~~ 230 (237)
T PLN02434 160 PATAPALFGGGLLGYVMYDCTHY-FLHHG-Q-PST--DV--LRNLKKYHLNHHFRDQ--DKGFGITSSLWDRVFGTLPPS 230 (237)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHhc-C-cch--HH--HHHHHHHHHHHcCCCC--CCCCCcCchHHHHhcCCCCCc
Confidence 211 11223333333322 34443 1 211 11 1123689999999874 899999999999999998654
Q ss_pred HH
Q 024309 252 RK 253 (269)
Q Consensus 252 ~~ 253 (269)
++
T Consensus 231 ~~ 232 (237)
T PLN02434 231 KA 232 (237)
T ss_pred ch
Confidence 33
No 8
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=98.32 E-value=1.4e-06 Score=73.65 Aligned_cols=135 Identities=17% Similarity=0.145 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCcch---hh------hhhhhhccCCCCCcccccccCChHHHHHHHHHHH-HHHHhh
Q 024309 108 VLSQIIFYFILEDFVFYWGHR-ILHTKW---LY------KHVHSVHHEYATPFGLTSEYAHPAEILFLGFATI-VGPAIT 176 (269)
Q Consensus 108 ~~~~~~~~~l~~D~~~Y~~HR-l~H~~~---ly------~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~~~~-~~~~l~ 176 (269)
+..-++++.+...+.+|-.|| ++|.+. =| --+|-.||.. |..-.-.-+-|+-+.+...+.. +..+++
T Consensus 83 ~~~~f~~Gvf~WTl~EY~lHRflFH~k~~~~s~~~~t~Hfl~HGcHHk~--P~D~~RLVfPP~~~~il~~pfy~~~~~vl 160 (240)
T KOG0539|consen 83 FSGLFVIGVFTWTLIEYTLHRFLFHIKPNPDSYWLITLHFLIHGCHHKL--PMDGYRLVFPPTPFAILAAPFYLILSLVL 160 (240)
T ss_pred hhHHHHHHHHHHHHHHHHHHheEEEecCCCCchHHHHHHHHHhcccccC--CCCCceEecCCchHHHHHHHHHHHHHHhc
Confidence 344567889999999999999 588641 11 1378889966 4333344566666655543322 222222
Q ss_pred cchH------HHHHHHHHHHHHHHHHhhcCcccCCCCccccccccCchhhhHhhcccCCCCccccccchhhhhhcCCChh
Q 024309 177 GPHL------MTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKG 250 (269)
Q Consensus 177 g~~~------~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~~~~~~~~~~H~~HH~~~~~~~~Nyg~~~~~wD~lfGT~~~ 250 (269)
+... ..++.|..+....-...|.+-. ..+ . +-...++|.-||-+.. +..||....+||++|||.-.
T Consensus 161 ~~~~~~a~faG~l~GYV~YDmtHYyLHhg~p~--~~~--~--~~~lK~yHl~HHfk~q--~~GfGItS~lWD~VFgTl~~ 232 (240)
T KOG0539|consen 161 PHPVAPAGFAGGLLGYVCYDMTHYYLHHGSPP--KRP--Y--LKHLKKYHLNHHFKHQ--DLGFGITSSLWDYVFGTLGP 232 (240)
T ss_pred CcchhhhhhccchhhhhhhhhhhhhhhcCCCC--Cch--H--HHHHHHHHhhhhhhcc--ccCccccHHHHHHHhccCCC
Confidence 2110 2234445554444334444321 111 0 2234678888998774 89999999999999999876
Q ss_pred hH
Q 024309 251 YR 252 (269)
Q Consensus 251 ~~ 252 (269)
.+
T Consensus 233 ~~ 234 (240)
T KOG0539|consen 233 LK 234 (240)
T ss_pred Cc
Confidence 54
No 9
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=98.19 E-value=5.5e-06 Score=78.35 Aligned_cols=132 Identities=19% Similarity=0.190 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhccCCCCCcc---------cccccCChHHHHHHHHHHHHHHHhh-----
Q 024309 111 QIIFYFILEDFVFYWGHRILHTKWLYKHVHSVHHEYATPFG---------LTSEYAHPAEILFLGFATIVGPAIT----- 176 (269)
Q Consensus 111 ~~~~~~l~~D~~~Y~~HRl~H~~~ly~~~H~~HH~~~~p~~---------~~a~~~hp~E~ll~~~~~~~~~~l~----- 176 (269)
+++..-+++|++.+..|++ .++| |+|..||+.-.++- -+..|.+|.|++++.....++.+++
T Consensus 15 ~~~~~~~~~d~~h~~~h~~---~~l~-~~h~~hh~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 90 (406)
T PRK07424 15 SILWVEIVRDSYHALAHQW---NPLY-RLHNWHHRVFRPDLSVVSEEIYRKAHWYNDVPEALVMLLFGTLPVLLLQQWNV 90 (406)
T ss_pred HHHHHHHHHHHHHHHHhhc---hHHH-HHHHhHHhhcCCcCCcccHHHHhhhhhhcCCHHHHHHHHHhhHHHHHHhhhcc
Confidence 3344445555554444444 4776 69999999987653 2478899999777654322221111
Q ss_pred c------chHHHHHHHH---HHHHHHHHHhh-cCcccCCCC--ccccc--cccCchhhhHhhcccCCCCccccccchhhh
Q 024309 177 G------PHLMTLWLWM---VLRVLETVEAH-CGYHFPWSL--SNFIP--LYGGADFHDYHHRLLYTKSGNYSSTFVYMD 242 (269)
Q Consensus 177 g------~~~~~~~~~~---~~~~~~~~~~H-sg~~~p~~~--~~~~~--~~~~~~~H~~HH~~~~~~~~Nyg~~~~~wD 242 (269)
+ .+....+.|+ +++.... ... ++-|....| ..-.| ++.++.+|..||-.+. +.-|+..+++-|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~d~~h~~~~~~~~~~~~~v~~~~h~rh~~~~~--~~~~~~~~~~~d 167 (406)
T PRK07424 91 PYGWLAWLGVLYTLTFLFGAIARGLGL-PNADELTDLTHLPGPFETLPSQWFVNRPYHWRHHFDNQ--NAYYCGTFTLVD 167 (406)
T ss_pred cccchhhhhhHHHHHHHHHHHHHhccc-ccccccccccCCCCcccCCCccCeecCceeEEEEeccc--cceeeeeEEEee
Confidence 0 1222223333 2232221 222 333331111 11111 5678899999998873 578899999999
Q ss_pred hhcCCCh
Q 024309 243 WIFGTDK 249 (269)
Q Consensus 243 ~lfGT~~ 249 (269)
+..||..
T Consensus 168 ~~~~ta~ 174 (406)
T PRK07424 168 KLMGTAL 174 (406)
T ss_pred hhcCccc
Confidence 9999964
No 10
>PLN02601 beta-carotene hydroxylase
Probab=98.19 E-value=4.4e-05 Score=67.03 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCcchhhhhhhhhccCCCC
Q 024309 111 QIIFYFILEDFVFYWGHR-ILHTKWLYKHVHSVHHEYAT 148 (269)
Q Consensus 111 ~~~~~~l~~D~~~Y~~HR-l~H~~~ly~~~H~~HH~~~~ 148 (269)
-++..++..|++-+|.|| +||- +.|..|+-||+.+.
T Consensus 139 l~lgtfvgMEf~Aw~aHKYvMHG--~LW~lH~sHH~Pr~ 175 (303)
T PLN02601 139 LSVGAAVGMEFWARWAHRALWHD--SLWNMHESHHKPRE 175 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cchhhhhhcCCCCC
Confidence 345677888999999999 7998 34679999998864
No 11
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=95.98 E-value=0.016 Score=48.72 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=44.1
Q ss_pred HHHhhcCcccCCCCcccc---ccccCchhhhHhhcccCCCCccccccchhhhhhcCCChhhHHHHH
Q 024309 194 TVEAHCGYHFPWSLSNFI---PLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYRKLKA 256 (269)
Q Consensus 194 ~~~~Hsg~~~p~~~~~~~---~~~~~~~~H~~HH~~~~~~~~Nyg~~~~~wD~lfGT~~~~~~~~~ 256 (269)
.-..|.....|.. .+++ .++.++++|..||..+. +.||+...++|+.+.-...-+|..++
T Consensus 102 HkWsH~~~~~P~~-V~~LQ~~gillsr~~H~~HH~aPh--~~~YCI~tGw~N~~Ld~~~f~~~lE~ 164 (178)
T PF10520_consen 102 HKWSHTYKSLPPW-VRFLQDAGILLSRKHHRIHHVAPH--DTNYCITTGWLNPPLDKIRFWRRLER 164 (178)
T ss_pred HHHHcCCCCCCHH-HHHHHHCCcccCchhhhccccCcc--cCCeEeecccchHHHHHhhHHHHHHH
Confidence 3467875555522 1222 27789999999999863 99999999999999988776666554
No 12
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=86.25 E-value=1.7 Score=38.27 Aligned_cols=138 Identities=14% Similarity=0.108 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCc------chh---hhhhhhhccCCCCCcccccccCChHHHHHHHHHH----H
Q 024309 104 SWKVVLSQIIFYFILEDFVFYWGHRILHT------KWL---YKHVHSVHHEYATPFGLTSEYAHPAEILFLGFAT----I 170 (269)
Q Consensus 104 ~~~~~~~~~~~~~l~~D~~~Y~~HRl~H~------~~l---y~~~H~~HH~~~~p~~~~a~~~hp~E~ll~~~~~----~ 170 (269)
.|...++...++.+..|+..=.+|...=. |.. +-+ =+-||.. |.. -.+...+|.+...... .
T Consensus 105 ~~~~~~La~~aG~i~AD~~SGl~HWaaD~~Gsv~tP~vG~~f~r-freHH~d--P~t--ITr~~f~~~~~ll~~a~~f~v 179 (293)
T KOG3011|consen 105 LWLEPALAAYAGYITADLGSGVYHWAADNYGSVSTPWVGRQFER-FQEHHKD--PWT--ITRRQFANNLHLLARAYTFIV 179 (293)
T ss_pred hhHHHHHHHHHHHHHHhhhcceeEeeccccCccccchhHHHHHH-HHhccCC--cce--eeHHHHhhhhHHHHHhheeEe
Confidence 35556778889999999999999996443 222 223 4678865 333 3344444543221110 0
Q ss_pred HHH-Hhh---cchH--HHHHHHHHHHHHHHHHhhcCcccCCCC--ccccccccCchhhhHhhcccCCCCccccccchhhh
Q 024309 171 VGP-AIT---GPHL--MTLWLWMVLRVLETVEAHCGYHFPWSL--SNFIPLYGGADFHDYHHRLLYTKSGNYSSTFVYMD 242 (269)
Q Consensus 171 ~~~-~l~---g~~~--~~~~~~~~~~~~~~~~~Hsg~~~p~~~--~~~~~~~~~~~~H~~HH~~~~~~~~Nyg~~~~~wD 242 (269)
..+ ++. +.|. .++.++..+..-..-+.|.-..+|.+- .+-..++...++|+.||..+. ++||....++|.
T Consensus 180 ~~~d~~~q~~~~h~fV~~~~i~v~~tnQiHkWsHTy~gLP~wVv~LQd~hlilpRkhH~iHH~aPh--~~yyCI~tGw~N 257 (293)
T KOG3011|consen 180 LPLDLAFQDPVFHGFVFLFAICVLFTNQIHKWSHTYSGLPPWVVLLQDMHLILPRKHHRIHHVAPH--NTYYCIVSGWWN 257 (293)
T ss_pred cCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHhhcceecccccccccccCcc--ccceEEeechhh
Confidence 111 111 1221 222333444443445688666676321 111125566788999999883 899999999999
Q ss_pred hhcCCC
Q 024309 243 WIFGTD 248 (269)
Q Consensus 243 ~lfGT~ 248 (269)
+..---
T Consensus 258 ~~Le~~ 263 (293)
T KOG3011|consen 258 WVLDES 263 (293)
T ss_pred chHHHH
Confidence 876543
No 13
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=78.81 E-value=14 Score=30.74 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=11.9
Q ss_pred hhhhhhhhhccCCCC
Q 024309 134 WLYKHVHSVHHEYAT 148 (269)
Q Consensus 134 ~ly~~~H~~HH~~~~ 148 (269)
..|+..|..||...+
T Consensus 71 ~~~r~~H~~HH~~~~ 85 (175)
T cd03510 71 AAYRRSHLKHHRHLG 85 (175)
T ss_pred HHHHHHHHHHhCccC
Confidence 457899999999853
No 14
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=77.83 E-value=23 Score=30.27 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=12.3
Q ss_pred hhhhhhhhhccCCCC
Q 024309 134 WLYKHVHSVHHEYAT 148 (269)
Q Consensus 134 ~ly~~~H~~HH~~~~ 148 (269)
..||..|..||+.++
T Consensus 73 ~~w~~~H~~HH~~~~ 87 (207)
T cd03514 73 PVFRRVHMQHHAHTN 87 (207)
T ss_pred HHHHHHHHHHhcCcC
Confidence 347889999999875
No 15
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=66.28 E-value=12 Score=34.28 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=28.1
Q ss_pred chhhhHhhcccCC----CCccccccchhhhhhcCCChh
Q 024309 217 ADFHDYHHRLLYT----KSGNYSSTFVYMDWIFGTDKG 250 (269)
Q Consensus 217 ~~~H~~HH~~~~~----~~~Nyg~~~~~wD~lfGT~~~ 250 (269)
.+.|+.||+.... ++.+=|..|.-.=++|-|..+
T Consensus 122 vrdHR~HHk~tdTD~DPhn~~rGF~FsHvgWl~~~k~p 159 (321)
T KOG1600|consen 122 VRDHRVHHKFTDTDADPHNPRRGFWFSHVGWLLDKKHP 159 (321)
T ss_pred HhhhhhhccccccCCCCCCcccchhhhhhhhHhccCCh
Confidence 4899999997652 578889999999999999763
No 16
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=64.63 E-value=49 Score=27.77 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=23.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhccCCCCC
Q 024309 99 SLPLPSWKVVLSQIIFYFILEDFVFYWGHRILHTKWLYKHVHSVHHEYATP 149 (269)
Q Consensus 99 ~~~lp~~~~~~~~~~~~~l~~D~~~Y~~HRl~H~~~ly~~~H~~HH~~~~p 149 (269)
....+.+.+.++.++..+.. +-.+..|-+.|+.||+....
T Consensus 31 sfk~~~~l~~~l~~~g~~a~-----------qgs~~~W~~~HR~HH~~sDt 70 (178)
T cd03505 31 SFKAPKPLRIFLAILGSLAG-----------QGSPLWWVADHRLHHRYSDT 70 (178)
T ss_pred cCcCcHHHHHHHHHHHHHHc-----------CcCHHHHHHHHHHhhcccCC
Confidence 34556666655444433321 22355567899999998753
No 17
>PLN02434 fatty acid hydroxylase
Probab=56.66 E-value=18 Score=31.83 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcch---hhhhhhhhccCCCCCc
Q 024309 107 VVLSQIIFYFILEDFVFYWGHRILHTKW---LYKHVHSVHHEYATPF 150 (269)
Q Consensus 107 ~~~~~~~~~~l~~D~~~Y~~HRl~H~~~---ly~~~H~~HH~~~~p~ 150 (269)
.+....+++.+++|...|..|...-... -.|+.|..||-..+-.
T Consensus 165 ~~~~G~l~gYl~Yd~~Hy~lH~~~p~~~~~r~lkr~H~~HHfk~~~~ 211 (237)
T PLN02434 165 ALFGGGLLGYVMYDCTHYFLHHGQPSTDVLRNLKKYHLNHHFRDQDK 211 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCCCCC
Confidence 4455678888999999999998532222 2588999999654333
No 18
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=42.69 E-value=1.3e+02 Score=25.40 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-----------hhhhhhhccCCC
Q 024309 104 SWKVVLSQIIFYFILEDFVFYWGHRILHTKWL-----------YKHVHSVHHEYA 147 (269)
Q Consensus 104 ~~~~~~~~~~~~~l~~D~~~Y~~HRl~H~~~l-----------y~~~H~~HH~~~ 147 (269)
.+-.++..+.++..+.+-..-|.|.-.-.|++ =++-|+.||...
T Consensus 83 ~~~~f~~~~~~~v~~tnq~HkWsH~~~~~P~~V~~LQ~~gillsr~~H~~HH~aP 137 (178)
T PF10520_consen 83 GWHCFLFSFAFFVAFTNQFHKWSHTYKSLPPWVRFLQDAGILLSRKHHRIHHVAP 137 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHCCcccCchhhhccccCc
Confidence 33344555555555555555555552112211 167899999884
No 19
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=38.87 E-value=1.3e+02 Score=27.77 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=11.2
Q ss_pred hhhhhhhhccCCCC
Q 024309 135 LYKHVHSVHHEYAT 148 (269)
Q Consensus 135 ly~~~H~~HH~~~~ 148 (269)
.||..|..||.+++
T Consensus 114 ~wR~~H~~HH~~t~ 127 (343)
T COG3239 114 FWRISHNQHHAHTN 127 (343)
T ss_pred hhhhhHHHhhcccC
Confidence 36777999999974
No 20
>PF08636 Pkr1: ER protein Pkr1; InterPro: IPR013945 Pkr1 has been identified as an ER protein of unknown function.
Probab=37.12 E-value=70 Score=22.99 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=11.9
Q ss_pred ChhHHHHHHHHHH
Q 024309 1 MASIIESGWRYLI 13 (269)
Q Consensus 1 ~~~~~~~~W~~~~ 13 (269)
|+++.|..|+++.
T Consensus 1 M~sf~~~l~esIf 13 (75)
T PF08636_consen 1 MASFFEELWESIF 13 (75)
T ss_pred CchHHHHHHHHcc
Confidence 8899999999985
No 21
>COG5454 Predicted secreted protein [Function unknown]
Probab=33.08 E-value=2e+02 Score=21.09 Aligned_cols=14 Identities=14% Similarity=0.410 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhCCC
Q 024309 84 MIFSYPVFKYMGMQ 97 (269)
Q Consensus 84 ~~~~~~~~~~~g~~ 97 (269)
..+.+.....+|++
T Consensus 64 ~gl~y~lt~~~g~~ 77 (89)
T COG5454 64 FGLFYGLTHFLGYS 77 (89)
T ss_pred HHHHHHHHHHHcCC
Confidence 33444455667776
No 22
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=32.07 E-value=76 Score=26.45 Aligned_cols=13 Identities=38% Similarity=0.726 Sum_probs=10.6
Q ss_pred cCchhhhHhhccc
Q 024309 215 GGADFHDYHHRLL 227 (269)
Q Consensus 215 ~~~~~H~~HH~~~ 227 (269)
.+-.+|..||..+
T Consensus 216 ~~~~~H~~HHl~P 228 (257)
T PF00487_consen 216 GGLNYHIEHHLFP 228 (257)
T ss_pred cCCCChHHhCCCC
Confidence 4567999999988
No 23
>COG4818 Predicted membrane protein [Function unknown]
Probab=27.25 E-value=67 Score=24.24 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhHHHHHhcccc
Q 024309 28 FLHESIFFLAGLPFIYLERAG 48 (269)
Q Consensus 28 ~~~~~~y~~~~l~f~~~~~~~ 48 (269)
++++.+.|+.|++|+++++.+
T Consensus 8 aLCY~lgwitGllFlllEre~ 28 (105)
T COG4818 8 ALCYLLGWITGLLFLLLERES 28 (105)
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 356778899999999998643
No 24
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=26.43 E-value=2.7e+02 Score=25.69 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhccCCCCC
Q 024309 101 PLPSWKVVLSQIIFYFILEDFVFYWGHRILHTKWLYKHVHSVHHEYATP 149 (269)
Q Consensus 101 ~lp~~~~~~~~~~~~~l~~D~~~Y~~HRl~H~~~ly~~~H~~HH~~~~p 149 (269)
.+|.|++.++.+.-++.+.+-... |-+-|+.||++++.
T Consensus 97 Ka~kpLr~fla~~~~~A~Qg~~~~-----------WvrdHR~HHk~tdT 134 (321)
T KOG1600|consen 97 KAPKPLRYFLAYCNTLAFQGDIID-----------WVRDHRVHHKFTDT 134 (321)
T ss_pred cCCccHHHHHHHHHHHhccCChhH-----------HHhhhhhhcccccc
Confidence 455555555444444444433333 35789999988753
No 25
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=24.53 E-value=1.3e+02 Score=22.29 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=13.1
Q ss_pred CcchhhhhhhhhccCCCC
Q 024309 131 HTKWLYKHVHSVHHEYAT 148 (269)
Q Consensus 131 H~~~ly~~~H~~HH~~~~ 148 (269)
-....|+..|..||....
T Consensus 47 ~~~~~~~~~H~~HH~~~~ 64 (122)
T cd01060 47 GSYGWWRRSHRRHHRYTN 64 (122)
T ss_pred CCHHHHHHHHHHHhcCcC
Confidence 334557889999998754
No 26
>PLN02601 beta-carotene hydroxylase
Probab=22.88 E-value=1.8e+02 Score=26.33 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hcCcch--h----------hhhhhhhccCCC
Q 024309 109 LSQIIFYFILEDFVFYWGHR-ILHTKW--L----------YKHVHSVHHEYA 147 (269)
Q Consensus 109 ~~~~~~~~l~~D~~~Y~~HR-l~H~~~--l----------y~~~H~~HH~~~ 147 (269)
.+-+.+++.++-+.+++.|= +-|.++ . .++.|++||+.+
T Consensus 210 ~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~~~Y~rrl~~AHklHHa~K 261 (303)
T PLN02601 210 CFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYLRKVAAAHQLHHTDK 261 (303)
T ss_pred HHHHHHhHHHHHHHHHHHhhhhhccccccCCCCCCHHHHHHHHHHHhhccCC
Confidence 34567888889999999998 678642 1 246899999843
No 27
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=22.54 E-value=3.2e+02 Score=25.19 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHhhHHHHHhccccccc
Q 024309 23 CLGSFFLHESIFFLAGLPFIYLERAGWLS 51 (269)
Q Consensus 23 ~~~~~~~~~~~y~~~~l~f~~~~~~~~~~ 51 (269)
..+-.+++..+|++.|..|++......++
T Consensus 179 l~~fvl~Pl~i~l~iG~~fL~~G~~~l~r 207 (328)
T PF01534_consen 179 LRGFVLAPLFIYLLIGTVFLLAGFVSLFR 207 (328)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556778888888888888877443333
Done!