Query 024309
Match_columns 269
No_of_seqs 228 out of 1555
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 06:01:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwa_A Receptor tyrosine-prote 15.8 2.1E+02 0.0072 17.4 3.8 8 51-58 36-43 (44)
2 3t76_A VANU, transcriptional r 12.7 54 0.0018 22.8 0.5 18 216-236 2-19 (88)
3 2kxa_A Haemagglutinin HA2 chai 9.1 2E+02 0.007 15.8 1.9 15 2-16 7-21 (30)
4 2jyl_A Capsid protein P24 (Ca) 8.9 1.4E+02 0.0047 21.7 1.6 39 216-256 2-40 (105)
5 2lhu_A Mybpc3 protein; cardiac 8.2 79 0.0027 23.7 0.0 17 216-235 2-18 (124)
6 2knc_A Integrin alpha-IIB; tra 7.7 4.7E+02 0.016 16.5 3.6 16 39-54 28-43 (54)
7 2p06_A Hypothetical protein AF 7.5 90 0.0031 21.9 0.0 15 216-233 2-16 (114)
8 2r6u_A Uncharacterized protein 6.6 1.1E+02 0.0038 22.6 0.1 18 216-236 2-19 (148)
9 2l9u_A Receptor tyrosine-prote 6.6 4.4E+02 0.015 15.1 3.7 17 113-129 18-34 (40)
10 1zx3_A Hypothetical protein NE 6.5 1.1E+02 0.0036 21.7 0.0 12 216-227 2-13 (122)
No 1
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=15.75 E-value=2.1e+02 Score=17.42 Aligned_cols=8 Identities=0% Similarity=0.177 Sum_probs=3.8
Q ss_pred cccccCCC
Q 024309 51 SKYKIQTK 58 (269)
Q Consensus 51 ~~~kiq~~ 58 (269)
+++|+|++
T Consensus 36 RRR~~~~k 43 (44)
T 2jwa_A 36 KRRQQKIR 43 (44)
T ss_dssp HHHCSCCC
T ss_pred ehhhhhcc
Confidence 44455543
No 2
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=12.74 E-value=54 Score=22.77 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=3.8
Q ss_pred CchhhhHhhcccCCCCccccc
Q 024309 216 GADFHDYHHRLLYTKSGNYSS 236 (269)
Q Consensus 216 ~~~~H~~HH~~~~~~~~Nyg~ 236 (269)
+..+|.-||..+ ..|++.
T Consensus 2 ~~~~~~~~~~~~---~~~~~~ 19 (88)
T 3t76_A 2 GSSHHHHHHSSG---RENLYF 19 (88)
T ss_dssp ---------------CCCCSC
T ss_pred CccccccccCCC---ccchhh
Confidence 456788889888 667764
No 3
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=9.14 E-value=2e+02 Score=15.81 Aligned_cols=15 Identities=40% Similarity=0.831 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHhhc
Q 024309 2 ASIIESGWRYLITHF 16 (269)
Q Consensus 2 ~~~~~~~W~~~~~~~ 16 (269)
+.|+|..|+.+++..
T Consensus 7 AGfieggW~gmi~gw 21 (30)
T 2kxa_A 7 AGFIEGGWTGMIDGW 21 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhhcCcccccccc
Confidence 468899999998764
No 4
>2jyl_A Capsid protein P24 (Ca); HIV-1, carboxy-terminal, dimerization domain, CTD, 3D- NMR, capsid protein (Ca), double mutant; NMR {Human immunodeficiency virus 1} PDB: 2k1c_A* 2l6e_A*
Probab=8.86 E-value=1.4e+02 Score=21.75 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=13.9
Q ss_pred CchhhhHhhcccCCCCccccccchhhhhhcCCChhhHHHHH
Q 024309 216 GADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYRKLKA 256 (269)
Q Consensus 216 ~~~~H~~HH~~~~~~~~Nyg~~~~~wD~lfGT~~~~~~~~~ 256 (269)
+..+|.-||+.... ..-|.. ..+||.-=|...++++...
T Consensus 2 ~~~~~~~~~~~~~~-~~~~sp-~si~~IkQGpKEPf~dyVd 40 (105)
T 2jyl_A 2 GSSHHHHHHSSGLV-PRGSHM-TSILDIRQGPKEPFRDYVD 40 (105)
T ss_dssp ----------------------CCGGGCCCCSSSCHHHHHH
T ss_pred CcccccccccCcce-eeeecC-cchhhhhcCCCCcHHHHHH
Confidence 35567777776532 334543 6788888888777766543
No 5
>2lhu_A Mybpc3 protein; cardiac, structural protein; NMR {Mus musculus}
Probab=8.19 E-value=79 Score=23.73 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=0.0
Q ss_pred CchhhhHhhcccCCCCcccc
Q 024309 216 GADFHDYHHRLLYTKSGNYS 235 (269)
Q Consensus 216 ~~~~H~~HH~~~~~~~~Nyg 235 (269)
+..+|.-||+.. -+||.
T Consensus 2 ~~~~~~~~~~~~---~~~F~ 18 (124)
T 2lhu_A 2 GSSHHHHHHSSG---LVPRG 18 (124)
T ss_dssp --------------------
T ss_pred CcccccccccCc---ccccc
Confidence 456788888888 88984
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=7.70 E-value=4.7e+02 Score=16.52 Aligned_cols=16 Identities=6% Similarity=0.393 Sum_probs=9.2
Q ss_pred HHHHHhcccccccccc
Q 024309 39 LPFIYLERAGWLSKYK 54 (269)
Q Consensus 39 l~f~~~~~~~~~~~~k 54 (269)
++..++.+.+||++.|
T Consensus 28 li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 28 ILVLAMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHcCcccCCC
Confidence 3334555778876544
No 7
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=7.47 E-value=90 Score=21.86 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=0.0
Q ss_pred CchhhhHhhcccCCCCcc
Q 024309 216 GADFHDYHHRLLYTKSGN 233 (269)
Q Consensus 216 ~~~~H~~HH~~~~~~~~N 233 (269)
++.+|.-||+.+ +.|
T Consensus 2 gsshhhhhhssg---ren 16 (114)
T 2p06_A 2 GSSHHHHHHSSG---REN 16 (114)
T ss_dssp ------------------
T ss_pred CCcccccccccc---ccc
Confidence 456788888877 555
No 8
>2r6u_A Uncharacterized protein; structural genomics, PSI-2, RHA04853, MCSG, protein structur initiative, midwest center for structural genomics; 1.50A {Rhodococcus SP}
Probab=6.56 E-value=1.1e+02 Score=22.61 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=1.5
Q ss_pred CchhhhHhhcccCCCCccccc
Q 024309 216 GADFHDYHHRLLYTKSGNYSS 236 (269)
Q Consensus 216 ~~~~H~~HH~~~~~~~~Nyg~ 236 (269)
+..+|.-||+.. +.|+..
T Consensus 2 ~~~~~~~~~~~~---~~~~~~ 19 (148)
T 2r6u_A 2 GSSHHHHHHSSG---RENLYF 19 (148)
T ss_dssp ------------------CCC
T ss_pred Cccccccccccc---cccccc
Confidence 356778888877 666653
No 9
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=6.55 E-value=4.4e+02 Score=15.14 Aligned_cols=17 Identities=24% Similarity=0.753 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 024309 113 IFYFILEDFVFYWGHRI 129 (269)
Q Consensus 113 ~~~~l~~D~~~Y~~HRl 129 (269)
++++++...+.||--|-
T Consensus 18 vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 18 VIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCceeEEEcccc
Confidence 45666677777776664
No 10
>1zx3_A Hypothetical protein NE0241; structural genomics, PSI, prote structure initiative, midwest center for structural genomic unknown function; 2.50A {Nitrosomonas europaea} SCOP: a.43.1.6
Probab=6.54 E-value=1.1e+02 Score=21.72 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=0.0
Q ss_pred CchhhhHhhccc
Q 024309 216 GADFHDYHHRLL 227 (269)
Q Consensus 216 ~~~~H~~HH~~~ 227 (269)
++.+|.-||+..
T Consensus 2 gsshhhhhhssg 13 (122)
T 1zx3_A 2 GSSHHHHHHSSG 13 (122)
T ss_dssp ------------
T ss_pred CCcccccccccc
Confidence 456778888877
Done!