Query 024309
Match_columns 269
No_of_seqs 228 out of 1555
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 06:01:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024309.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024309hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v9sa1 c.61.1.1 (A:1-208) Ura 4.6 93 0.0068 23.4 0.5 7 242-248 202-208 (208)
2 d1i5ea_ c.61.1.1 (A:) Uracil P 4.5 90 0.0066 23.5 0.3 8 241-248 201-208 (208)
3 d2gycf1 d.99.1.1 (F:59-149) Ri 4.5 2E+02 0.015 18.4 2.2 27 242-268 30-56 (91)
4 d1o5oa_ c.61.1.1 (A:) Uracil P 4.5 96 0.007 23.4 0.5 8 241-248 203-210 (210)
5 d1bd3a_ c.61.1.1 (A:) Uracil P 4.3 96 0.007 23.7 0.3 7 241-247 217-223 (224)
6 d1kf6d_ f.21.2.2 (D:) Fumarate 3.8 5.9E+02 0.043 17.0 8.0 16 81-96 29-44 (119)
7 d2j01i1 d.99.1.1 (I:56-146) Ri 3.1 3.7E+02 0.027 16.8 2.5 27 242-268 31-58 (91)
8 d1wb8a1 a.2.11.1 (A:4-92) Fe s 2.5 2.4E+02 0.017 17.8 0.9 20 208-227 16-38 (89)
9 d2epra1 g.37.1.1 (A:350-384) P 2.3 3.8E+02 0.028 13.7 1.3 10 140-149 24-33 (35)
10 d1p7ga1 a.2.11.1 (A:12-103) Fe 2.1 3E+02 0.022 17.5 0.9 10 218-227 30-39 (92)
No 1
>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus [TaxId: 274]}
Probab=4.62 E-value=93 Score=23.40 Aligned_cols=7 Identities=57% Similarity=1.037 Sum_probs=6.1
Q ss_pred hhhcCCC
Q 024309 242 DWIFGTD 248 (269)
Q Consensus 242 D~lfGT~ 248 (269)
||.|||.
T Consensus 202 DR~fgT~ 208 (208)
T d1v9sa1 202 DRIYGTK 208 (208)
T ss_dssp HHHHTCC
T ss_pred HhccCCC
Confidence 8999994
No 2
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]}
Probab=4.55 E-value=90 Score=23.52 Aligned_cols=8 Identities=50% Similarity=0.792 Sum_probs=6.6
Q ss_pred hhhhcCCC
Q 024309 241 MDWIFGTD 248 (269)
Q Consensus 241 wD~lfGT~ 248 (269)
=||.|||.
T Consensus 201 GDR~fGT~ 208 (208)
T d1i5ea_ 201 GDRLFGTK 208 (208)
T ss_dssp HHHHHSCC
T ss_pred HHhccCCC
Confidence 49999994
No 3
>d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain {Escherichia coli [TaxId: 562]}
Probab=4.53 E-value=2e+02 Score=18.35 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=16.5
Q ss_pred hhhcCCChhhHHHHHhhhcCCCCCCCC
Q 024309 242 DWIFGTDKGYRKLKALKSFGIEDDPKQ 268 (269)
Q Consensus 242 D~lfGT~~~~~~~~~~~~~~~~~~~~~ 268 (269)
++|||.-..-+-.+.-+++|.+-|+++
T Consensus 30 GkLfGSVt~~dI~~~l~~~g~~Idk~~ 56 (91)
T d2gycf1 30 GKLFGSIGTRDIADAVTAAGVEVAKSE 56 (91)
T ss_dssp TEESSCCCHHHHHHHHTTTTCCCCSTT
T ss_pred CeeeeecCHHHHHHHHHHcCCcccHHH
Confidence 467787655555555556676666553
No 4
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima [TaxId: 2336]}
Probab=4.51 E-value=96 Score=23.36 Aligned_cols=8 Identities=38% Similarity=0.476 Sum_probs=6.5
Q ss_pred hhhhcCCC
Q 024309 241 MDWIFGTD 248 (269)
Q Consensus 241 wD~lfGT~ 248 (269)
=||+|||.
T Consensus 203 GDR~fgTk 210 (210)
T d1o5oa_ 203 GDRLFRTK 210 (210)
T ss_dssp HHHHHTCC
T ss_pred HHhhcCCC
Confidence 49999994
No 5
>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811]}
Probab=4.30 E-value=96 Score=23.68 Aligned_cols=7 Identities=57% Similarity=0.715 Sum_probs=6.0
Q ss_pred hhhhcCC
Q 024309 241 MDWIFGT 247 (269)
Q Consensus 241 wD~lfGT 247 (269)
=||.|||
T Consensus 217 GDR~fGT 223 (224)
T d1bd3a_ 217 GDRYFGT 223 (224)
T ss_dssp HHHHHTC
T ss_pred HHhhcCC
Confidence 3899999
No 6
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=3.79 E-value=5.9e+02 Score=17.01 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhCC
Q 024309 81 LPVMIFSYPVFKYMGM 96 (269)
Q Consensus 81 ~~~~~~~~~~~~~~g~ 96 (269)
.|.+++...++--+|+
T Consensus 29 ~Pvlill~giLlPlG~ 44 (119)
T d1kf6d_ 29 APVMILLVGILLPLGL 44 (119)
T ss_dssp HHHHHHHHHTTGGGTC
T ss_pred HHHHHHHHHHHHhccc
Confidence 4554444333333454
No 7
>d2j01i1 d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain {Thermus thermophilus [TaxId: 274]}
Probab=3.06 E-value=3.7e+02 Score=16.85 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=17.7
Q ss_pred hhhcCCChhhHHHHHhh-hcCCCCCCCC
Q 024309 242 DWIFGTDKGYRKLKALK-SFGIEDDPKQ 268 (269)
Q Consensus 242 D~lfGT~~~~~~~~~~~-~~~~~~~~~~ 268 (269)
+++||+-..-+-.++-+ +.|.+-|+++
T Consensus 31 gkLfGSVt~~dIa~~l~~~~g~~Idk~~ 58 (91)
T d2j01i1 31 TKIYGSVTAKDIAEALSRQHGVTIDPKR 58 (91)
T ss_dssp SSBSSCCCHHHHHHHHHTTTCCCCCTTT
T ss_pred CceecccCHHHHHHHHHhccCceechHH
Confidence 46889877656566554 3577766654
No 8
>d1wb8a1 a.2.11.1 (A:4-92) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=2.54 E-value=2.4e+02 Score=17.83 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=11.1
Q ss_pred cccccccc--Cc-hhhhHhhccc
Q 024309 208 SNFIPLYG--GA-DFHDYHHRLL 227 (269)
Q Consensus 208 ~~~~~~~~--~~-~~H~~HH~~~ 227 (269)
..+.|.+. |- -+|+.||+..
T Consensus 16 ~aLeP~Is~~Tm~~Hh~kHH~~Y 38 (89)
T d1wb8a1 16 DALEPYISKDIIDVHYNGHHKGY 38 (89)
T ss_dssp TTTTTTSCHHHHHHHHHTHHHHH
T ss_pred cccccccCHHHHHHHHHHHHHHH
Confidence 33445543 22 4568888865
No 9
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.27 E-value=3.8e+02 Score=13.70 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=4.7
Q ss_pred hhhccCCCCC
Q 024309 140 HSVHHEYATP 149 (269)
Q Consensus 140 H~~HH~~~~p 149 (269)
|+.-|+...|
T Consensus 24 hklshs~ekp 33 (35)
T d2epra1 24 HKLSHSGEKP 33 (35)
T ss_dssp HGGGSCSCCC
T ss_pred hhcccCCCCC
Confidence 4444544444
No 10
>d1p7ga1 a.2.11.1 (A:12-103) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=2.10 E-value=3e+02 Score=17.46 Aligned_cols=10 Identities=30% Similarity=0.328 Sum_probs=6.8
Q ss_pred hhhhHhhccc
Q 024309 218 DFHDYHHRLL 227 (269)
Q Consensus 218 ~~H~~HH~~~ 227 (269)
-+|+-||+..
T Consensus 30 ~Hh~KHH~~Y 39 (92)
T d1p7ga1 30 LHHQKHHQGY 39 (92)
T ss_dssp HHHHTHHHHH
T ss_pred HHHHHHHHHH
Confidence 3568888855
Done!