Query 024311
Match_columns 269
No_of_seqs 189 out of 2046
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:38:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 100.0 9.7E-30 2.1E-34 216.1 12.8 155 7-246 15-172 (173)
2 KOG2920 Predicted methyltransf 100.0 6.7E-29 1.5E-33 222.5 5.6 195 1-269 83-281 (282)
3 KOG3201 Uncharacterized conser 99.9 1.4E-22 2.9E-27 168.0 2.8 170 7-268 5-176 (201)
4 COG3897 Predicted methyltransf 99.7 1.1E-17 2.4E-22 142.8 9.3 138 11-245 59-197 (218)
5 KOG2793 Putative N2,N2-dimethy 99.7 1.1E-16 2.3E-21 142.6 15.0 179 8-268 52-239 (248)
6 PF05175 MTS: Methyltransferas 99.5 4.9E-12 1.1E-16 106.9 16.6 147 14-265 18-170 (170)
7 PRK15068 tRNA mo(5)U34 methylt 99.4 8.1E-12 1.8E-16 116.0 16.9 137 33-256 120-274 (322)
8 TIGR00537 hemK_rel_arch HemK-r 99.4 1.9E-11 4.2E-16 103.7 17.3 127 35-258 19-166 (179)
9 TIGR00452 methyltransferase, p 99.4 1E-11 2.2E-16 114.9 16.1 152 13-256 104-273 (314)
10 PF12847 Methyltransf_18: Meth 99.4 6.4E-12 1.4E-16 97.6 12.4 106 35-226 1-111 (112)
11 PF06325 PrmA: Ribosomal prote 99.4 1.4E-11 3.1E-16 113.0 16.0 62 14-86 146-207 (295)
12 COG2264 PrmA Ribosomal protein 99.4 1.3E-11 2.8E-16 112.9 14.6 140 14-254 147-286 (300)
13 PLN02396 hexaprenyldihydroxybe 99.3 2E-11 4.3E-16 113.5 14.8 131 33-250 129-283 (322)
14 PLN02244 tocopherol O-methyltr 99.3 5.7E-11 1.2E-15 111.1 17.8 134 34-254 117-276 (340)
15 COG2227 UbiG 2-polyprenyl-3-me 99.3 3.5E-12 7.6E-17 112.6 8.3 110 33-231 57-166 (243)
16 PF13847 Methyltransf_31: Meth 99.3 3.2E-11 6.8E-16 99.6 11.1 108 35-228 3-112 (152)
17 PF08241 Methyltransf_11: Meth 99.3 3.6E-11 7.9E-16 89.7 10.3 95 40-224 1-95 (95)
18 KOG1270 Methyltransferases [Co 99.3 1.1E-11 2.3E-16 110.6 8.2 111 33-229 87-198 (282)
19 PRK00517 prmA ribosomal protei 99.3 3.9E-10 8.4E-15 101.0 17.8 134 13-254 103-236 (250)
20 PRK14967 putative methyltransf 99.2 5.6E-10 1.2E-14 98.1 16.8 54 15-73 21-74 (223)
21 PRK11207 tellurite resistance 99.2 2.3E-10 4.9E-15 99.0 13.0 39 34-73 29-67 (197)
22 PRK11873 arsM arsenite S-adeno 99.2 7.1E-10 1.5E-14 100.0 16.6 134 34-254 76-228 (272)
23 TIGR00406 prmA ribosomal prote 99.2 6.7E-10 1.4E-14 101.6 15.9 54 14-73 144-197 (288)
24 PRK14968 putative methyltransf 99.2 2.7E-09 5.9E-14 90.1 18.2 58 3-73 3-60 (188)
25 PRK05134 bifunctional 3-demeth 99.2 1.3E-09 2.7E-14 96.0 16.7 155 20-266 37-217 (233)
26 PRK00107 gidB 16S rRNA methylt 99.2 1.6E-09 3.5E-14 93.3 16.5 118 35-250 45-163 (187)
27 TIGR00138 gidB 16S rRNA methyl 99.2 6.5E-10 1.4E-14 95.2 13.9 122 34-250 41-163 (181)
28 smart00828 PKS_MT Methyltransf 99.2 8.7E-10 1.9E-14 96.3 15.1 131 37-254 1-142 (224)
29 PRK11036 putative S-adenosyl-L 99.2 2E-10 4.3E-15 102.9 11.1 105 35-225 44-148 (255)
30 PLN02233 ubiquinone biosynthes 99.2 9.7E-10 2.1E-14 99.2 15.4 107 35-225 73-181 (261)
31 COG4123 Predicted O-methyltran 99.1 8.1E-10 1.7E-14 98.7 13.8 139 14-250 31-188 (248)
32 PLN02490 MPBQ/MSBQ methyltrans 99.1 2.1E-09 4.5E-14 100.5 17.2 130 35-254 113-254 (340)
33 PTZ00098 phosphoethanolamine N 99.1 1.7E-09 3.7E-14 97.7 16.1 131 34-254 51-200 (263)
34 PRK10258 biotin biosynthesis p 99.1 7.2E-10 1.6E-14 98.8 13.4 99 35-226 42-140 (251)
35 PRK10909 rsmD 16S rRNA m(2)G96 99.1 8.3E-10 1.8E-14 96.0 13.3 109 34-229 52-162 (199)
36 TIGR02752 MenG_heptapren 2-hep 99.1 2.6E-09 5.7E-14 93.7 16.2 104 35-225 45-150 (231)
37 TIGR00477 tehB tellurite resis 99.1 8.1E-10 1.8E-14 95.4 12.5 38 35-73 30-67 (195)
38 PLN02336 phosphoethanolamine N 99.1 3.4E-09 7.4E-14 103.0 18.3 130 35-252 266-410 (475)
39 PRK08287 cobalt-precorrin-6Y C 99.1 3.3E-09 7.1E-14 90.6 15.9 119 35-250 31-150 (187)
40 PRK00216 ubiE ubiquinone/menaq 99.1 2.6E-09 5.7E-14 93.3 15.7 105 35-225 51-157 (239)
41 PF13489 Methyltransf_23: Meth 99.1 3.5E-10 7.6E-15 92.7 9.3 64 185-249 75-156 (161)
42 PRK12335 tellurite resistance 99.1 8E-10 1.7E-14 100.9 12.0 39 34-73 119-157 (287)
43 TIGR01983 UbiG ubiquinone bios 99.1 4.9E-09 1.1E-13 91.4 16.0 126 14-226 24-149 (224)
44 PRK01683 trans-aconitate 2-met 99.1 2.2E-09 4.8E-14 95.9 13.7 100 34-226 30-130 (258)
45 PRK15128 23S rRNA m(5)C1962 me 99.1 2.5E-09 5.4E-14 102.1 14.2 126 34-246 219-355 (396)
46 PRK15001 SAM-dependent 23S rib 99.1 6.2E-09 1.3E-13 98.7 16.6 46 36-82 229-275 (378)
47 PF08003 Methyltransf_9: Prote 99.1 7.1E-09 1.5E-13 94.9 16.2 139 33-258 113-269 (315)
48 TIGR02072 BioC biotin biosynth 99.1 2.9E-09 6.4E-14 92.8 13.1 102 34-226 33-135 (240)
49 PRK00121 trmB tRNA (guanine-N( 99.1 2.9E-09 6.3E-14 92.5 12.8 126 35-250 40-175 (202)
50 PF13659 Methyltransf_26: Meth 99.0 7.5E-10 1.6E-14 86.7 8.1 106 36-226 1-115 (117)
51 PF01209 Ubie_methyltran: ubiE 99.0 2.5E-09 5.4E-14 95.2 11.8 104 35-225 47-152 (233)
52 PRK14103 trans-aconitate 2-met 99.0 1.9E-09 4.1E-14 96.5 10.8 38 187-225 88-125 (255)
53 TIGR03534 RF_mod_PrmC protein- 99.0 2.4E-08 5.2E-13 88.3 17.6 57 12-73 69-126 (251)
54 COG2226 UbiE Methylase involve 99.0 2.6E-09 5.5E-14 95.2 11.3 104 35-225 51-155 (238)
55 TIGR00095 RNA methyltransferas 99.0 6.2E-09 1.3E-13 89.7 13.0 49 33-86 47-95 (189)
56 PLN02585 magnesium protoporphy 99.0 2.1E-08 4.5E-13 93.0 17.4 39 34-73 143-181 (315)
57 PRK00377 cbiT cobalt-precorrin 99.0 1.7E-08 3.6E-13 87.2 15.3 128 33-254 38-167 (198)
58 PRK11783 rlmL 23S rRNA m(2)G24 99.0 5.2E-09 1.1E-13 106.6 13.9 133 34-259 537-682 (702)
59 TIGR03704 PrmC_rel_meth putati 99.0 2.5E-08 5.3E-13 89.7 16.5 56 15-73 69-125 (251)
60 PRK14966 unknown domain/N5-glu 99.0 2.9E-08 6.3E-13 94.9 17.7 52 16-73 238-290 (423)
61 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 3.4E-08 7.4E-13 85.3 16.2 103 35-226 39-143 (223)
62 COG2263 Predicted RNA methylas 99.0 2.3E-08 4.9E-13 85.7 14.6 60 19-84 30-89 (198)
63 TIGR02469 CbiT precorrin-6Y C5 99.0 4.4E-08 9.6E-13 76.7 15.0 39 35-73 19-58 (124)
64 PRK09328 N5-glutamine S-adenos 99.0 8.3E-08 1.8E-12 86.3 18.7 54 16-73 93-147 (275)
65 PRK09489 rsmC 16S ribosomal RN 99.0 2.9E-08 6.4E-13 93.0 16.3 38 36-73 197-235 (342)
66 PRK08317 hypothetical protein; 98.9 2.7E-08 5.9E-13 86.4 14.8 105 34-226 18-124 (241)
67 PF02353 CMAS: Mycolic acid cy 98.9 1E-08 2.2E-13 93.3 12.5 114 17-224 48-164 (273)
68 TIGR02021 BchM-ChlM magnesium 98.9 1.3E-08 2.7E-13 89.0 12.2 40 33-73 53-92 (219)
69 TIGR03587 Pse_Me-ase pseudamin 98.9 3.7E-08 8E-13 85.9 15.0 39 35-73 43-82 (204)
70 PF05401 NodS: Nodulation prot 98.9 2E-08 4.3E-13 86.7 12.3 120 37-247 45-171 (201)
71 PF08242 Methyltransf_12: Meth 98.9 3.4E-10 7.4E-15 86.5 1.1 35 187-222 65-99 (99)
72 PF03602 Cons_hypoth95: Conser 98.9 3.5E-09 7.5E-14 91.0 7.4 112 34-228 41-155 (183)
73 PRK15451 tRNA cmo(5)U34 methyl 98.9 3E-08 6.5E-13 88.6 13.5 106 35-228 56-166 (247)
74 PTZ00146 fibrillarin; Provisio 98.9 1.4E-07 3.1E-12 86.3 17.8 156 10-254 107-269 (293)
75 PRK04266 fibrillarin; Provisio 98.9 3.1E-07 6.7E-12 81.4 18.4 64 8-72 45-110 (226)
76 TIGR01177 conserved hypothetic 98.9 1.1E-07 2.4E-12 88.5 16.3 38 35-73 182-219 (329)
77 TIGR00536 hemK_fam HemK family 98.9 8.8E-08 1.9E-12 87.4 15.3 37 37-73 116-153 (284)
78 PF13649 Methyltransf_25: Meth 98.9 6.6E-09 1.4E-13 79.8 6.7 35 39-73 1-39 (101)
79 PF03848 TehB: Tellurite resis 98.8 3.4E-08 7.3E-13 85.4 11.5 40 33-73 28-67 (192)
80 PRK11188 rrmJ 23S rRNA methylt 98.8 1.9E-07 4E-12 81.7 16.2 138 33-266 49-203 (209)
81 COG2890 HemK Methylase of poly 98.8 3.4E-07 7.4E-12 83.6 18.5 36 38-73 113-149 (280)
82 PRK01544 bifunctional N5-gluta 98.8 1.2E-07 2.7E-12 93.2 16.7 39 35-73 138-177 (506)
83 TIGR00740 methyltransferase, p 98.8 5.4E-08 1.2E-12 86.2 12.5 105 35-227 53-162 (239)
84 TIGR03533 L3_gln_methyl protei 98.8 1.4E-07 2.9E-12 86.3 15.4 39 35-73 121-160 (284)
85 PRK11705 cyclopropane fatty ac 98.8 8.6E-08 1.9E-12 91.2 14.0 39 34-73 166-205 (383)
86 COG2813 RsmC 16S RNA G1207 met 98.8 2.9E-07 6.2E-12 84.3 16.6 46 36-82 159-205 (300)
87 PRK07580 Mg-protoporphyrin IX 98.8 1.4E-07 3E-12 82.4 14.0 39 34-73 62-100 (230)
88 COG2230 Cfa Cyclopropane fatty 98.8 8.9E-08 1.9E-12 87.2 12.6 102 33-224 70-174 (283)
89 PRK05785 hypothetical protein; 98.8 5.9E-08 1.3E-12 85.8 10.8 39 35-73 51-89 (226)
90 TIGR00080 pimt protein-L-isoas 98.8 2E-07 4.2E-12 81.5 14.0 55 15-73 61-117 (215)
91 PRK11805 N5-glutamine S-adenos 98.8 2.6E-07 5.6E-12 85.4 15.4 37 37-73 135-172 (307)
92 KOG1271 Methyltransferases [Ge 98.8 1.3E-07 2.9E-12 80.6 12.1 59 14-73 46-106 (227)
93 cd02440 AdoMet_MTases S-adenos 98.7 1.4E-07 3.1E-12 69.6 10.6 102 38-225 1-103 (107)
94 KOG1499 Protein arginine N-met 98.7 2.6E-08 5.7E-13 92.3 7.7 41 30-71 55-95 (346)
95 TIGR03840 TMPT_Se_Te thiopurin 98.7 9.4E-08 2E-12 83.9 10.5 63 5-73 6-71 (213)
96 PRK13944 protein-L-isoaspartat 98.7 4.3E-07 9.3E-12 79.0 14.4 39 35-73 72-112 (205)
97 PHA03411 putative methyltransf 98.7 2.5E-07 5.3E-12 84.1 13.2 38 36-73 65-103 (279)
98 PRK00312 pcm protein-L-isoaspa 98.7 6.6E-07 1.4E-11 77.8 14.8 54 15-73 62-115 (212)
99 PRK13168 rumA 23S rRNA m(5)U19 98.7 4E-07 8.6E-12 88.1 14.5 123 17-231 283-405 (443)
100 smart00138 MeTrc Methyltransfe 98.7 1.9E-07 4.2E-12 84.4 11.6 41 186-227 201-243 (264)
101 TIGR02716 C20_methyl_CrtF C-20 98.7 6.2E-07 1.3E-11 82.4 14.8 102 35-225 149-253 (306)
102 PRK10901 16S rRNA methyltransf 98.7 8.4E-07 1.8E-11 85.5 16.1 45 35-84 244-289 (427)
103 PLN02336 phosphoethanolamine N 98.7 1.7E-07 3.7E-12 91.1 11.3 127 35-249 37-175 (475)
104 PLN02672 methionine S-methyltr 98.7 7.1E-07 1.5E-11 94.0 16.5 65 14-82 100-165 (1082)
105 COG0742 N6-adenine-specific me 98.7 2.6E-07 5.6E-12 79.4 11.0 48 33-85 41-88 (187)
106 TIGR00091 tRNA (guanine-N(7)-) 98.7 6.1E-07 1.3E-11 77.3 13.4 39 35-73 16-55 (194)
107 PRK13942 protein-L-isoaspartat 98.6 8.2E-07 1.8E-11 77.7 13.5 55 15-73 60-116 (212)
108 PRK13255 thiopurine S-methyltr 98.6 2.8E-07 6.2E-12 81.2 10.5 63 5-73 9-74 (218)
109 PRK07402 precorrin-6B methylas 98.6 1.5E-06 3.2E-11 74.8 14.5 39 35-73 40-79 (196)
110 smart00650 rADc Ribosomal RNA 98.6 4.6E-07 9.9E-12 76.2 11.0 37 35-72 13-49 (169)
111 PRK11088 rrmA 23S rRNA methylt 98.6 4.9E-07 1.1E-11 81.9 11.9 39 35-73 85-127 (272)
112 PLN03075 nicotianamine synthas 98.6 1.3E-06 2.7E-11 80.4 14.5 133 35-259 123-263 (296)
113 PRK03522 rumB 23S rRNA methylu 98.6 4.9E-07 1.1E-11 83.7 12.0 45 35-85 173-217 (315)
114 PRK06922 hypothetical protein; 98.6 3.2E-07 7E-12 91.8 11.4 40 34-73 417-457 (677)
115 TIGR02085 meth_trns_rumB 23S r 98.6 5.5E-07 1.2E-11 85.4 12.1 108 34-231 232-339 (374)
116 PRK06202 hypothetical protein; 98.5 4.8E-07 1E-11 79.8 9.1 39 35-73 60-103 (232)
117 PRK14902 16S rRNA methyltransf 98.5 3.3E-06 7.2E-11 81.7 15.5 45 35-84 250-296 (444)
118 COG1092 Predicted SAM-dependen 98.5 1.5E-06 3.3E-11 82.7 12.3 128 33-246 215-352 (393)
119 PRK03612 spermidine synthase; 98.5 1.3E-06 2.8E-11 86.4 12.2 40 35-74 297-337 (521)
120 PLN02781 Probable caffeoyl-CoA 98.5 1.5E-06 3.4E-11 77.2 11.5 136 35-254 68-220 (234)
121 TIGR00479 rumA 23S rRNA (uraci 98.5 3.6E-06 7.8E-11 81.1 14.8 122 35-249 292-413 (431)
122 TIGR02081 metW methionine bios 98.5 3.4E-06 7.4E-11 72.4 12.9 38 35-72 13-50 (194)
123 TIGR00438 rrmJ cell division p 98.5 2.7E-06 5.8E-11 72.7 12.0 37 33-69 30-68 (188)
124 COG2242 CobL Precorrin-6B meth 98.5 1.7E-05 3.7E-10 68.0 16.8 121 33-249 32-153 (187)
125 TIGR00478 tly hemolysin TlyA f 98.5 1.1E-06 2.3E-11 78.1 9.7 57 11-71 55-111 (228)
126 KOG3191 Predicted N6-DNA-methy 98.5 1.1E-05 2.4E-10 68.9 15.3 68 14-83 23-92 (209)
127 PRK00811 spermidine synthase; 98.4 4.4E-06 9.5E-11 76.4 13.7 40 35-74 76-116 (283)
128 KOG3010 Methyltransferase [Gen 98.4 5.6E-07 1.2E-11 79.8 7.4 40 186-226 98-137 (261)
129 PHA03412 putative methyltransf 98.4 4.7E-06 1E-10 74.3 13.3 39 35-73 49-91 (241)
130 KOG4300 Predicted methyltransf 98.4 2.5E-06 5.4E-11 74.3 10.7 40 185-225 142-181 (252)
131 PRK14904 16S rRNA methyltransf 98.4 7E-06 1.5E-10 79.6 15.1 63 10-84 232-296 (445)
132 COG4976 Predicted methyltransf 98.4 3E-07 6.6E-12 81.0 4.9 69 185-254 185-263 (287)
133 PRK04148 hypothetical protein; 98.4 1.9E-06 4.1E-11 70.4 8.6 49 18-71 3-52 (134)
134 TIGR00563 rsmB ribosomal RNA s 98.4 6.6E-06 1.4E-10 79.3 13.9 45 35-84 238-283 (426)
135 KOG1500 Protein arginine N-met 98.4 2.4E-06 5.1E-11 79.2 9.8 37 31-67 173-209 (517)
136 PRK13943 protein-L-isoaspartat 98.4 1.1E-05 2.3E-10 75.2 14.3 39 35-73 80-120 (322)
137 TIGR00446 nop2p NOL1/NOP2/sun 98.4 1.1E-05 2.3E-10 73.0 13.7 46 35-85 71-118 (264)
138 PF07021 MetW: Methionine bios 98.3 3.3E-06 7.1E-11 72.8 9.8 62 185-250 72-161 (193)
139 PRK14903 16S rRNA methyltransf 98.3 8.1E-06 1.8E-10 78.9 13.6 45 35-84 237-283 (431)
140 COG4106 Tam Trans-aconitate me 98.3 1.5E-06 3.3E-11 76.1 7.6 99 34-225 29-128 (257)
141 PRK04457 spermidine synthase; 98.3 5.6E-06 1.2E-10 74.9 11.6 39 35-73 66-105 (262)
142 PRK14121 tRNA (guanine-N(7)-)- 98.3 8.6E-06 1.9E-10 77.5 12.5 39 35-73 122-161 (390)
143 PRK14901 16S rRNA methyltransf 98.3 1.9E-05 4.2E-10 76.2 15.1 46 35-85 252-299 (434)
144 PF01596 Methyltransf_3: O-met 98.3 1.5E-05 3.4E-10 69.6 13.1 136 35-254 45-192 (205)
145 PRK05031 tRNA (uracil-5-)-meth 98.3 1.3E-05 2.8E-10 75.8 12.7 60 16-86 192-251 (362)
146 PF05185 PRMT5: PRMT5 arginine 98.3 6.8E-06 1.5E-10 79.8 10.9 37 35-71 186-227 (448)
147 TIGR02143 trmA_only tRNA (urac 98.3 9.9E-06 2.1E-10 76.3 11.6 45 36-86 198-242 (353)
148 TIGR03438 probable methyltrans 98.2 1.1E-05 2.5E-10 74.2 11.7 39 35-73 63-103 (301)
149 TIGR00308 TRM1 tRNA(guanine-26 98.2 7.4E-06 1.6E-10 77.8 10.6 46 36-86 45-92 (374)
150 PRK04338 N(2),N(2)-dimethylgua 98.2 9.2E-06 2E-10 77.4 11.2 46 36-86 58-104 (382)
151 PRK01581 speE spermidine synth 98.2 1.2E-05 2.7E-10 75.7 11.9 40 35-74 150-190 (374)
152 PF10672 Methyltrans_SAM: S-ad 98.2 5.8E-06 1.3E-10 75.7 9.4 128 34-248 122-256 (286)
153 KOG1540 Ubiquinone biosynthesi 98.2 9.6E-06 2.1E-10 72.7 10.4 108 33-224 98-212 (296)
154 TIGR00417 speE spermidine synt 98.2 2.4E-05 5.1E-10 71.0 12.7 40 35-74 72-112 (270)
155 PLN02476 O-methyltransferase 98.2 5.7E-05 1.2E-09 69.0 14.8 137 34-254 117-265 (278)
156 PF05219 DREV: DREV methyltran 98.1 2.5E-05 5.5E-10 70.2 10.7 63 186-249 149-233 (265)
157 KOG2497 Predicted methyltransf 98.1 9.6E-07 2.1E-11 79.8 1.2 54 7-66 66-119 (262)
158 COG4122 Predicted O-methyltran 98.1 0.00013 2.8E-09 64.4 14.1 134 35-256 59-207 (219)
159 COG2519 GCD14 tRNA(1-methylade 98.0 0.0002 4.3E-09 64.2 14.8 131 33-261 92-224 (256)
160 PLN02366 spermidine synthase 98.0 6E-05 1.3E-09 69.9 11.3 40 35-74 91-131 (308)
161 KOG3420 Predicted RNA methylas 98.0 7.7E-06 1.7E-10 67.6 4.7 69 12-85 25-93 (185)
162 PF05724 TPMT: Thiopurine S-me 97.9 9.9E-06 2.1E-10 71.4 4.7 62 6-73 10-74 (218)
163 COG2518 Pcm Protein-L-isoaspar 97.9 0.00014 3.1E-09 63.5 11.3 46 33-84 70-115 (209)
164 PTZ00338 dimethyladenosine tra 97.9 0.00014 3.1E-09 66.9 11.8 39 34-73 35-73 (294)
165 PF01135 PCMT: Protein-L-isoas 97.9 7E-05 1.5E-09 65.7 9.0 41 33-73 70-112 (209)
166 PRK13256 thiopurine S-methyltr 97.9 0.00017 3.7E-09 64.0 11.1 54 14-73 27-80 (226)
167 PRK14896 ksgA 16S ribosomal RN 97.9 0.00011 2.3E-09 66.2 9.8 39 34-73 28-66 (258)
168 PRK00274 ksgA 16S ribosomal RN 97.8 6.8E-05 1.5E-09 68.0 8.6 50 19-73 30-79 (272)
169 PF06080 DUF938: Protein of un 97.8 0.00028 6.1E-09 61.5 11.4 63 185-248 99-165 (204)
170 PF00891 Methyltransf_2: O-met 97.8 0.00018 3.9E-09 63.6 10.1 97 35-228 100-201 (241)
171 PF01861 DUF43: Protein of unk 97.8 0.0014 3.1E-08 58.5 15.5 167 5-264 19-186 (243)
172 COG1041 Predicted DNA modifica 97.7 0.0012 2.6E-08 61.8 15.0 56 19-84 185-240 (347)
173 PF02527 GidB: rRNA small subu 97.7 0.0015 3.3E-08 56.2 14.1 57 185-249 112-168 (184)
174 PF02475 Met_10: Met-10+ like- 97.7 0.00017 3.7E-09 62.9 8.0 49 33-82 99-148 (200)
175 KOG2899 Predicted methyltransf 97.7 0.00031 6.8E-09 62.7 9.5 42 32-73 55-97 (288)
176 COG2265 TrmA SAM-dependent met 97.7 0.0017 3.7E-08 62.9 15.2 121 35-249 293-413 (432)
177 PF08704 GCD14: tRNA methyltra 97.6 0.0013 2.8E-08 59.1 13.4 130 33-254 38-169 (247)
178 PLN02589 caffeoyl-CoA O-methyl 97.6 0.00058 1.3E-08 61.4 10.6 142 35-260 79-238 (247)
179 KOG1541 Predicted protein carb 97.6 0.0006 1.3E-08 60.2 10.2 38 35-73 50-87 (270)
180 PRK11727 23S rRNA mA1618 methy 97.6 0.00019 4.2E-09 66.8 7.7 47 35-82 114-161 (321)
181 PLN02823 spermine synthase 97.6 0.00048 1E-08 64.6 10.1 40 35-74 103-143 (336)
182 COG3963 Phospholipid N-methylt 97.5 0.0014 3E-08 55.6 10.9 56 12-71 29-86 (194)
183 KOG2940 Predicted methyltransf 97.5 0.00016 3.4E-09 64.2 5.4 64 185-254 134-202 (325)
184 COG1352 CheR Methylase of chem 97.5 0.0012 2.5E-08 60.2 10.8 44 185-229 199-244 (268)
185 PF11968 DUF3321: Putative met 97.5 0.0017 3.7E-08 57.1 11.2 65 185-254 101-179 (219)
186 TIGR00755 ksgA dimethyladenosi 97.5 0.00055 1.2E-08 61.3 8.4 38 34-72 28-65 (253)
187 PF05958 tRNA_U5-meth_tr: tRNA 97.4 0.00091 2E-08 63.1 9.8 44 37-86 198-241 (352)
188 KOG2904 Predicted methyltransf 97.4 0.0012 2.7E-08 59.9 10.0 69 13-84 128-197 (328)
189 COG2521 Predicted archaeal met 97.3 0.00037 8E-09 62.0 5.7 39 35-73 134-172 (287)
190 PF01170 UPF0020: Putative RNA 97.3 0.0034 7.4E-08 53.5 11.4 46 35-85 28-83 (179)
191 PF02390 Methyltransf_4: Putat 97.3 0.0061 1.3E-07 52.8 12.9 37 37-73 19-56 (195)
192 COG0357 GidB Predicted S-adeno 97.3 0.0018 3.9E-08 57.0 9.6 34 36-69 68-102 (215)
193 PRK00536 speE spermidine synth 97.2 0.0063 1.4E-07 55.2 12.5 40 35-75 72-111 (262)
194 PF05148 Methyltransf_8: Hypot 97.2 0.01 2.2E-07 52.1 13.2 61 185-250 119-179 (219)
195 PF09243 Rsm22: Mitochondrial 97.2 0.0073 1.6E-07 55.0 12.5 60 14-73 12-73 (274)
196 PF07942 N2227: N2227-like pro 97.1 0.024 5.1E-07 51.7 15.4 47 33-83 54-100 (270)
197 KOG2361 Predicted methyltransf 97.1 0.0023 5.1E-08 57.1 8.0 40 185-225 141-182 (264)
198 PF03291 Pox_MCEL: mRNA cappin 97.1 0.0035 7.7E-08 58.7 9.7 40 35-74 62-101 (331)
199 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.0 0.0022 4.8E-08 57.9 7.5 40 32-71 53-92 (256)
200 PF08123 DOT1: Histone methyla 97.0 0.0075 1.6E-07 52.8 10.5 39 35-73 42-81 (205)
201 PRK10611 chemotaxis methyltran 97.0 0.0033 7.2E-08 57.8 8.5 42 186-228 221-264 (287)
202 PHA01634 hypothetical protein 97.0 0.0016 3.4E-08 52.9 5.6 51 31-82 24-74 (156)
203 PF01739 CheR: CheR methyltran 97.0 0.0013 2.8E-08 57.1 5.6 43 185-228 133-177 (196)
204 COG2520 Predicted methyltransf 97.0 0.0035 7.7E-08 58.8 8.6 50 33-83 186-235 (341)
205 PRK11760 putative 23S rRNA C24 96.9 0.018 4E-07 54.1 12.9 36 32-68 208-243 (357)
206 PLN02232 ubiquinone biosynthes 96.9 0.0034 7.3E-08 52.4 6.8 40 185-225 41-80 (160)
207 KOG1709 Guanidinoacetate methy 96.8 0.0044 9.6E-08 54.6 7.2 62 34-119 100-161 (271)
208 PF13679 Methyltransf_32: Meth 96.7 0.0092 2E-07 48.7 7.8 56 18-73 8-68 (141)
209 KOG3045 Predicted RNA methylas 96.6 0.034 7.3E-07 50.4 11.6 65 185-254 225-289 (325)
210 TIGR01444 fkbM_fam methyltrans 96.6 0.005 1.1E-07 49.6 5.8 43 38-85 1-44 (143)
211 PF09445 Methyltransf_15: RNA 96.6 0.0062 1.3E-07 51.4 6.2 60 37-119 1-60 (163)
212 PF01564 Spermine_synth: Sperm 96.5 0.05 1.1E-06 48.8 12.2 40 35-74 76-116 (246)
213 TIGR02987 met_A_Alw26 type II 96.5 0.059 1.3E-06 53.3 13.8 39 35-73 31-78 (524)
214 PRK11783 rlmL 23S rRNA m(2)G24 96.5 0.039 8.5E-07 56.7 12.7 35 18-55 176-210 (702)
215 COG4076 Predicted RNA methylas 96.4 0.0057 1.2E-07 52.9 5.3 36 36-72 33-68 (252)
216 COG0421 SpeE Spermidine syntha 96.3 0.053 1.2E-06 49.7 11.4 38 37-74 78-116 (282)
217 KOG2187 tRNA uracil-5-methyltr 96.2 0.042 9.2E-07 53.9 10.6 61 15-85 367-427 (534)
218 PRK11933 yebU rRNA (cytosine-C 96.2 0.081 1.8E-06 51.9 12.4 46 35-85 113-160 (470)
219 PF02384 N6_Mtase: N-6 DNA Met 96.0 0.1 2.2E-06 47.8 11.5 54 17-74 32-93 (311)
220 PF03141 Methyltransf_29: Puta 96.0 0.013 2.8E-07 57.3 5.7 46 184-230 177-223 (506)
221 COG0500 SmtA SAM-dependent met 95.9 0.19 4.1E-06 37.8 11.1 40 187-228 118-157 (257)
222 COG0030 KsgA Dimethyladenosine 95.9 0.14 3E-06 46.4 11.8 36 35-71 30-65 (259)
223 KOG3987 Uncharacterized conser 95.9 0.0024 5.2E-08 56.0 0.3 64 186-249 167-253 (288)
224 COG1189 Predicted rRNA methyla 95.9 0.021 4.5E-07 51.0 6.2 54 14-71 62-115 (245)
225 COG1889 NOP1 Fibrillarin-like 95.7 1.2 2.7E-05 39.1 16.2 66 6-73 46-115 (231)
226 COG4262 Predicted spermidine s 95.7 0.33 7.1E-06 46.2 13.5 40 36-75 290-330 (508)
227 COG0220 Predicted S-adenosylme 95.7 0.068 1.5E-06 47.5 8.6 37 37-73 50-87 (227)
228 COG0293 FtsJ 23S rRNA methylas 95.6 0.13 2.8E-06 45.0 10.1 37 32-68 42-80 (205)
229 KOG1661 Protein-L-isoaspartate 95.6 0.11 2.5E-06 45.7 9.4 42 33-74 80-124 (237)
230 PF05891 Methyltransf_PK: AdoM 95.6 0.19 4.2E-06 44.3 11.0 64 186-250 120-195 (218)
231 PF05971 Methyltransf_10: Prot 95.6 0.1 2.2E-06 48.3 9.6 45 36-86 103-149 (299)
232 PF00398 RrnaAD: Ribosomal RNA 95.4 0.061 1.3E-06 48.5 7.7 52 16-72 15-66 (262)
233 PRK01544 bifunctional N5-gluta 95.3 0.21 4.5E-06 49.5 11.7 38 35-72 347-385 (506)
234 KOG1975 mRNA cap methyltransfe 94.7 0.23 4.9E-06 46.5 9.3 40 35-74 117-156 (389)
235 PF01269 Fibrillarin: Fibrilla 94.4 2.6 5.7E-05 37.5 14.7 61 186-249 141-205 (229)
236 KOG2798 Putative trehalase [Ca 94.4 0.94 2E-05 42.3 12.3 49 33-85 148-196 (369)
237 COG0116 Predicted N6-adenine-s 94.4 0.98 2.1E-05 43.1 12.9 46 35-85 191-276 (381)
238 KOG1501 Arginine N-methyltrans 94.0 0.063 1.4E-06 52.0 4.1 38 36-73 67-104 (636)
239 PF01728 FtsJ: FtsJ-like methy 93.6 0.13 2.9E-06 43.2 5.1 52 15-69 5-59 (181)
240 COG1568 Predicted methyltransf 93.6 0.11 2.5E-06 47.5 4.7 62 5-72 127-189 (354)
241 KOG1663 O-methyltransferase [S 93.2 1.6 3.4E-05 39.0 11.1 41 33-73 71-113 (237)
242 KOG1269 SAM-dependent methyltr 93.1 0.42 9.2E-06 45.4 8.1 39 185-224 175-213 (364)
243 TIGR03439 methyl_EasF probable 92.2 1.2 2.7E-05 41.5 9.9 38 35-72 76-118 (319)
244 KOG0820 Ribosomal RNA adenine 92.2 0.52 1.1E-05 43.1 7.0 39 33-72 56-94 (315)
245 PF04816 DUF633: Family of unk 92.2 0.58 1.3E-05 40.9 7.2 42 39-85 1-43 (205)
246 KOG0024 Sorbitol dehydrogenase 92.2 0.24 5.2E-06 46.3 5.0 40 34-73 168-209 (354)
247 PRK10742 putative methyltransf 92.2 0.45 9.8E-06 42.9 6.6 33 38-71 91-123 (250)
248 PF12147 Methyltransf_20: Puta 91.9 5 0.00011 37.2 13.0 37 35-71 135-174 (311)
249 PF04989 CmcI: Cephalosporin h 91.5 2.6 5.5E-05 37.0 10.4 131 9-225 11-146 (206)
250 PRK00050 16S rRNA m(4)C1402 me 91.1 0.81 1.8E-05 42.3 7.2 40 35-74 19-60 (296)
251 cd00315 Cyt_C5_DNA_methylase C 90.7 0.51 1.1E-05 42.9 5.6 41 38-83 2-42 (275)
252 PF03059 NAS: Nicotianamine sy 90.2 4.7 0.0001 36.9 11.3 38 36-73 121-161 (276)
253 PF01555 N6_N4_Mtase: DNA meth 90.2 0.89 1.9E-05 38.7 6.4 54 14-73 175-228 (231)
254 PF13578 Methyltransf_24: Meth 89.9 0.15 3.2E-06 38.9 1.1 36 187-224 68-103 (106)
255 COG0144 Sun tRNA and rRNA cyto 89.9 4.5 9.7E-05 38.3 11.3 46 35-85 156-204 (355)
256 KOG2915 tRNA(1-methyladenosine 88.8 10 0.00023 34.9 12.2 37 33-69 103-141 (314)
257 PF02005 TRM: N2,N2-dimethylgu 88.6 0.8 1.7E-05 43.7 5.3 47 35-86 49-97 (377)
258 KOG2352 Predicted spermine/spe 88.1 2.1 4.6E-05 42.0 7.8 38 37-74 50-87 (482)
259 PRK11524 putative methyltransf 87.5 2.2 4.7E-05 38.9 7.3 52 17-74 195-246 (284)
260 COG3129 Predicted SAM-dependen 87.4 2.9 6.2E-05 37.6 7.5 61 18-82 63-125 (292)
261 COG1867 TRM1 N2,N2-dimethylgua 87.1 1.1 2.4E-05 42.5 5.1 46 36-82 53-99 (380)
262 PF07757 AdoMet_MTase: Predict 87.0 1.3 2.7E-05 35.0 4.6 49 17-66 40-88 (112)
263 PRK13699 putative methylase; P 86.2 3.5 7.6E-05 36.4 7.6 67 184-258 16-99 (227)
264 PF00145 DNA_methylase: C-5 cy 85.5 1.8 3.9E-05 39.1 5.6 41 38-83 2-42 (335)
265 PF02086 MethyltransfD12: D12 85.1 1.5 3.2E-05 38.7 4.7 51 18-73 7-57 (260)
266 KOG1227 Putative methyltransfe 84.0 1.3 2.7E-05 41.2 3.8 72 10-86 167-241 (351)
267 PRK13699 putative methylase; P 83.7 4.6 0.0001 35.7 7.3 51 17-73 150-200 (227)
268 PRK11524 putative methyltransf 83.0 4.3 9.2E-05 37.0 6.9 65 185-258 24-106 (284)
269 PF03686 UPF0146: Uncharacteri 82.4 3.7 8E-05 33.3 5.5 45 17-69 2-47 (127)
270 COG1063 Tdh Threonine dehydrog 82.2 2.6 5.7E-05 39.5 5.4 39 35-73 168-208 (350)
271 COG5459 Predicted rRNA methyla 82.2 4.4 9.5E-05 38.6 6.6 40 186-226 183-225 (484)
272 PF02636 Methyltransf_28: Puta 80.3 4 8.6E-05 36.4 5.6 53 19-71 2-63 (252)
273 KOG2671 Putative RNA methylase 77.9 2.1 4.5E-05 40.6 3.0 51 34-85 207-259 (421)
274 KOG2730 Methylase [General fun 74.6 2.6 5.7E-05 37.6 2.6 64 35-121 94-157 (263)
275 KOG2078 tRNA modification enzy 74.5 2.3 4.9E-05 41.3 2.4 47 35-83 249-295 (495)
276 PF11599 AviRa: RRNA methyltra 71.9 7.9 0.00017 34.4 5.0 40 35-74 51-93 (246)
277 PF10237 N6-adenineMlase: Prob 71.3 51 0.0011 27.7 9.6 42 186-229 84-126 (162)
278 TIGR00675 dcm DNA-methyltransf 70.9 7.8 0.00017 35.9 5.1 40 39-83 1-40 (315)
279 PF01189 Nol1_Nop2_Fmu: NOL1/N 70.7 23 0.00051 32.3 8.1 65 8-84 65-131 (283)
280 PRK09424 pntA NAD(P) transhydr 70.7 7.6 0.00016 38.7 5.2 40 33-73 162-203 (509)
281 PF05206 TRM13: Methyltransfer 69.0 9.6 0.00021 34.5 5.1 37 32-68 15-57 (259)
282 PF03141 Methyltransf_29: Puta 67.4 10 0.00022 37.5 5.2 40 185-225 424-466 (506)
283 PF03269 DUF268: Caenorhabditi 66.8 40 0.00086 28.7 7.9 33 36-68 2-34 (177)
284 KOG4058 Uncharacterized conser 66.6 7.7 0.00017 32.6 3.6 38 37-74 74-111 (199)
285 COG0270 Dcm Site-specific DNA 66.3 14 0.00031 34.3 5.8 43 36-83 3-45 (328)
286 COG2384 Predicted SAM-dependen 65.9 17 0.00038 32.2 5.9 46 35-85 16-62 (226)
287 PF06962 rRNA_methylase: Putat 64.7 40 0.00087 27.7 7.5 41 204-249 72-118 (140)
288 PF07090 DUF1355: Protein of u 64.1 6.9 0.00015 33.5 3.0 48 186-234 65-116 (177)
289 PRK15001 SAM-dependent 23S rib 63.8 1.1E+02 0.0023 29.4 11.3 62 10-82 25-87 (378)
290 KOG3178 Hydroxyindole-O-methyl 61.1 1.5E+02 0.0033 28.1 11.9 37 188-225 236-274 (342)
291 COG1565 Uncharacterized conser 60.9 28 0.00061 33.2 6.6 55 18-73 61-124 (370)
292 PRK10458 DNA cytosine methylas 58.8 22 0.00048 35.0 5.8 44 35-83 87-130 (467)
293 COG1255 Uncharacterized protei 58.4 21 0.00045 28.7 4.5 44 18-69 3-47 (129)
294 cd08283 FDH_like_1 Glutathione 55.7 22 0.00048 33.3 5.2 41 33-73 182-224 (386)
295 PLN02668 indole-3-acetate carb 55.4 8.9 0.00019 36.8 2.4 19 35-53 63-81 (386)
296 KOG1201 Hydroxysteroid 17-beta 55.1 28 0.00061 32.3 5.5 41 30-71 32-75 (300)
297 cd00401 AdoHcyase S-adenosyl-L 54.0 29 0.00063 33.6 5.7 56 5-71 181-238 (413)
298 cd01080 NAD_bind_m-THF_DH_Cycl 53.6 38 0.00083 28.5 5.8 35 33-68 41-78 (168)
299 cd05311 NAD_bind_2_malic_enz N 52.8 38 0.00083 29.8 5.9 53 15-68 5-61 (226)
300 COG3392 Adenine-specific DNA m 51.9 18 0.00039 33.2 3.6 50 16-66 7-57 (330)
301 cd05191 NAD_bind_amino_acid_DH 51.1 63 0.0014 23.5 6.0 50 17-66 4-55 (86)
302 KOG2651 rRNA adenine N-6-methy 50.9 30 0.00065 33.4 5.1 34 37-70 155-188 (476)
303 cd08237 ribitol-5-phosphate_DH 48.3 32 0.00069 31.7 4.9 39 34-72 162-203 (341)
304 PRK05786 fabG 3-ketoacyl-(acyl 48.1 1.7E+02 0.0037 24.7 11.6 37 34-71 3-42 (238)
305 PF04378 RsmJ: Ribosomal RNA s 47.8 1.3E+02 0.0029 27.0 8.6 55 192-249 128-184 (245)
306 PRK09880 L-idonate 5-dehydroge 47.7 38 0.00082 31.1 5.3 37 34-72 168-208 (343)
307 TIGR00006 S-adenosyl-methyltra 47.6 1.9E+02 0.0042 26.9 9.8 39 35-73 20-59 (305)
308 PF07091 FmrO: Ribosomal RNA m 47.2 31 0.00068 31.2 4.4 38 36-73 106-144 (251)
309 COG0863 DNA modification methy 46.3 84 0.0018 28.0 7.3 41 32-73 219-259 (302)
310 KOG1331 Predicted methyltransf 45.8 47 0.001 30.7 5.4 40 185-225 100-142 (293)
311 COG0686 Ald Alanine dehydrogen 45.6 2.7E+02 0.0059 26.4 10.4 37 186-223 229-265 (371)
312 KOG0022 Alcohol dehydrogenase, 44.0 22 0.00049 33.5 3.0 38 35-72 192-231 (375)
313 PF01555 N6_N4_Mtase: DNA meth 43.5 78 0.0017 26.5 6.3 51 204-259 35-87 (231)
314 cd01075 NAD_bind_Leu_Phe_Val_D 42.2 68 0.0015 27.5 5.7 37 32-71 24-64 (200)
315 KOG1122 tRNA and rRNA cytosine 42.0 2.3E+02 0.005 27.8 9.6 46 35-85 241-288 (460)
316 PRK08223 hypothetical protein; 41.9 18 0.00038 33.4 2.0 48 31-83 22-71 (287)
317 COG1062 AdhC Zn-dependent alco 41.5 57 0.0012 31.0 5.3 40 34-73 184-225 (366)
318 COG2961 ComJ Protein involved 41.3 2.7E+02 0.0059 25.5 9.3 53 191-249 159-215 (279)
319 PF10354 DUF2431: Domain of un 41.0 1.5E+02 0.0032 24.8 7.4 62 185-250 72-146 (166)
320 PF04672 Methyltransf_19: S-ad 40.8 2.1E+02 0.0045 26.2 8.7 37 37-73 70-110 (267)
321 TIGR03366 HpnZ_proposed putati 39.7 62 0.0013 28.7 5.2 36 34-71 119-158 (280)
322 PLN02740 Alcohol dehydrogenase 39.7 52 0.0011 30.8 4.9 38 33-72 196-237 (381)
323 KOG0725 Reductases with broad 38.5 1E+02 0.0023 27.8 6.5 41 32-73 4-47 (270)
324 PRK05690 molybdopterin biosynt 38.3 28 0.0006 31.0 2.7 47 32-83 28-76 (245)
325 TIGR02818 adh_III_F_hyde S-(hy 37.2 65 0.0014 30.0 5.2 39 34-72 184-224 (368)
326 TIGR01202 bchC 2-desacetyl-2-h 36.7 57 0.0012 29.5 4.6 37 35-71 144-182 (308)
327 PF04445 SAM_MT: Putative SAM- 36.6 67 0.0015 28.7 4.8 33 38-71 78-110 (234)
328 PF11899 DUF3419: Protein of u 36.6 98 0.0021 29.6 6.3 53 11-73 19-72 (380)
329 PRK08339 short chain dehydroge 35.1 2.8E+02 0.0061 24.2 8.7 38 33-71 5-45 (263)
330 PRK06124 gluconate 5-dehydroge 35.0 2.8E+02 0.006 23.7 8.6 39 32-71 7-48 (256)
331 COG0499 SAM1 S-adenosylhomocys 34.0 62 0.0013 31.1 4.3 54 4-68 187-242 (420)
332 COG1064 AdhP Zn-dependent alco 33.5 96 0.0021 29.3 5.6 37 34-72 165-204 (339)
333 TIGR01381 E1_like_apg7 E1-like 33.4 46 0.00099 34.3 3.6 36 33-68 335-372 (664)
334 KOG4589 Cell division protein 32.7 58 0.0013 28.6 3.6 37 32-68 66-104 (232)
335 PF06859 Bin3: Bicoid-interact 32.6 25 0.00054 27.8 1.3 37 188-225 1-43 (110)
336 cd05312 NAD_bind_1_malic_enz N 32.3 1E+02 0.0022 28.4 5.3 52 15-67 5-68 (279)
337 TIGR00571 dam DNA adenine meth 32.2 1E+02 0.0022 27.7 5.4 48 18-73 13-60 (266)
338 KOG3350 Uncharacterized conser 32.2 64 0.0014 28.0 3.7 43 185-229 132-175 (217)
339 PF03721 UDPG_MGDP_dh_N: UDP-g 32.1 88 0.0019 26.5 4.7 27 45-72 7-37 (185)
340 PF00899 ThiF: ThiF family; I 31.7 53 0.0011 26.0 3.1 33 36-68 2-36 (135)
341 PRK08328 hypothetical protein; 31.6 40 0.00087 29.7 2.6 37 32-68 23-61 (231)
342 TIGR02356 adenyl_thiF thiazole 31.6 39 0.00086 29.0 2.5 37 32-68 17-55 (202)
343 TIGR03451 mycoS_dep_FDH mycoth 31.4 92 0.002 28.7 5.1 36 34-71 175-214 (358)
344 PF03949 Malic_M: Malic enzyme 31.2 80 0.0017 28.6 4.5 52 15-67 5-68 (255)
345 PF05050 Methyltransf_21: Meth 30.7 1.3E+02 0.0028 23.7 5.4 32 41-72 1-37 (167)
346 PF01488 Shikimate_DH: Shikima 30.6 97 0.0021 24.6 4.5 39 33-71 9-49 (135)
347 KOG1253 tRNA methyltransferase 30.5 21 0.00046 35.4 0.7 47 35-82 109-157 (525)
348 PRK05867 short chain dehydroge 30.0 3.3E+02 0.0072 23.3 8.2 38 33-71 6-46 (253)
349 PRK06949 short chain dehydroge 29.9 3.5E+02 0.0076 23.0 8.7 38 32-71 5-46 (258)
350 PRK06172 short chain dehydroge 29.8 3.5E+02 0.0076 23.0 8.3 37 34-71 5-44 (253)
351 cd08238 sorbose_phosphate_red 29.6 1E+02 0.0022 29.2 5.2 39 35-73 175-218 (410)
352 PRK08213 gluconate 5-dehydroge 29.6 3.6E+02 0.0077 23.1 8.4 37 33-71 9-49 (259)
353 PF08515 TGF_beta_GS: Transfor 29.5 28 0.00061 20.8 0.8 10 43-52 14-23 (29)
354 PRK07097 gluconate 5-dehydroge 29.5 3.7E+02 0.008 23.2 8.5 39 32-71 6-47 (265)
355 PRK12548 shikimate 5-dehydroge 29.4 89 0.0019 28.4 4.6 35 33-68 123-160 (289)
356 PF09345 DUF1987: Domain of un 29.4 2.3E+02 0.0049 21.8 6.1 56 202-259 25-86 (99)
357 TIGR00936 ahcY adenosylhomocys 29.4 96 0.0021 30.0 4.9 54 5-69 174-229 (406)
358 PRK08862 short chain dehydroge 29.4 1.5E+02 0.0033 25.5 5.9 37 34-71 3-42 (227)
359 PRK12826 3-ketoacyl-(acyl-carr 29.2 3.5E+02 0.0075 22.8 8.5 36 34-71 4-43 (251)
360 cd08281 liver_ADH_like1 Zinc-d 29.1 1E+02 0.0022 28.6 5.0 36 34-71 190-229 (371)
361 cd00762 NAD_bind_malic_enz NAD 28.8 80 0.0017 28.6 4.0 52 15-67 5-68 (254)
362 PLN02827 Alcohol dehydrogenase 28.8 1.1E+02 0.0023 28.7 5.1 36 34-71 192-231 (378)
363 PRK07688 thiamine/molybdopteri 28.2 46 0.00099 31.3 2.5 38 31-68 19-58 (339)
364 KOG3924 Putative protein methy 28.0 1.5E+02 0.0033 28.7 5.9 42 185-229 269-310 (419)
365 COG2813 RsmC 16S RNA G1207 met 28.0 1.7E+02 0.0038 27.2 6.2 54 186-248 35-90 (300)
366 TIGR02355 moeB molybdopterin s 27.7 39 0.00084 30.1 1.8 37 32-68 20-58 (240)
367 PRK05876 short chain dehydroge 27.5 3.9E+02 0.0085 23.5 8.4 37 34-71 4-43 (275)
368 TIGR02354 thiF_fam2 thiamine b 27.4 74 0.0016 27.4 3.5 36 32-67 17-54 (200)
369 PF08468 MTS_N: Methyltransfer 27.3 2.4E+02 0.0053 23.3 6.5 52 187-248 68-122 (155)
370 PRK07533 enoyl-(acyl carrier p 27.1 1.3E+02 0.0029 26.2 5.2 37 32-69 6-47 (258)
371 PF11312 DUF3115: Protein of u 27.0 1.7E+02 0.0036 27.5 5.8 58 11-68 48-140 (315)
372 PRK15116 sulfur acceptor prote 26.8 44 0.00095 30.4 2.0 40 32-71 26-67 (268)
373 PRK06141 ornithine cyclodeamin 26.5 1.6E+02 0.0034 27.1 5.7 62 2-71 99-163 (314)
374 PRK07877 hypothetical protein; 26.4 63 0.0014 33.7 3.3 38 31-68 102-141 (722)
375 COG5426 Uncharacterized membra 26.2 69 0.0015 28.1 3.0 40 187-226 68-118 (254)
376 KOG2017 Molybdopterin synthase 26.1 73 0.0016 30.5 3.3 49 30-83 60-110 (427)
377 COG0373 HemA Glutamyl-tRNA red 26.0 1.5E+02 0.0033 28.8 5.7 60 3-69 152-213 (414)
378 PRK07035 short chain dehydroge 26.0 4.1E+02 0.0089 22.6 8.5 38 33-71 5-45 (252)
379 PRK07411 hypothetical protein; 26.0 36 0.00078 32.5 1.4 47 32-83 34-82 (390)
380 cd00755 YgdL_like Family of ac 25.4 52 0.0011 29.2 2.2 36 33-68 8-45 (231)
381 cd06066 H2MP_NAD-link-bidir En 25.0 2.2E+02 0.0048 22.8 5.7 43 16-66 16-58 (139)
382 PRK07523 gluconate 5-dehydroge 24.8 2.8E+02 0.0062 23.7 6.8 37 33-71 7-47 (255)
383 PRK14192 bifunctional 5,10-met 24.6 2.2E+02 0.0047 26.0 6.2 36 31-67 154-192 (283)
384 cd05188 MDR Medium chain reduc 24.6 1.5E+02 0.0032 25.2 5.0 37 34-71 133-171 (271)
385 COG3510 CmcI Cephalosporin hyd 24.6 1.7E+02 0.0036 25.9 5.0 55 9-68 48-107 (237)
386 COG0338 Dam Site-specific DNA 24.5 59 0.0013 29.8 2.4 58 17-84 13-70 (274)
387 PRK08703 short chain dehydroge 24.4 2.5E+02 0.0054 23.8 6.4 36 34-71 4-43 (239)
388 TIGR03201 dearomat_had 6-hydro 24.1 1.4E+02 0.003 27.3 4.9 38 34-72 165-204 (349)
389 PF02737 3HCDH_N: 3-hydroxyacy 24.0 2.5E+02 0.0055 23.5 6.1 43 39-83 2-46 (180)
390 PF00107 ADH_zinc_N: Zinc-bind 23.6 87 0.0019 23.9 3.0 26 45-71 1-27 (130)
391 PF00106 adh_short: short chai 23.5 3.2E+02 0.007 21.4 6.5 30 37-67 1-34 (167)
392 PRK14851 hypothetical protein; 23.5 45 0.00098 34.5 1.6 38 32-69 39-78 (679)
393 KOG1207 Diacetyl reductase/L-x 23.2 2.6E+02 0.0056 24.4 5.9 38 33-71 4-44 (245)
394 PRK09242 tropinone reductase; 23.1 3E+02 0.0065 23.6 6.7 39 32-71 5-46 (257)
395 PRK05717 oxidoreductase; Valid 22.9 1.9E+02 0.0041 24.8 5.4 38 31-69 5-45 (255)
396 PRK05866 short chain dehydroge 22.7 5.5E+02 0.012 22.9 8.8 39 32-71 36-77 (293)
397 PRK14852 hypothetical protein; 22.5 46 0.001 35.8 1.5 39 31-69 327-367 (989)
398 PLN02494 adenosylhomocysteinas 22.4 1.7E+02 0.0036 29.1 5.2 55 4-69 232-288 (477)
399 PLN02780 ketoreductase/ oxidor 22.3 5.1E+02 0.011 23.6 8.3 37 34-71 51-90 (320)
400 PTZ00317 NADP-dependent malic 22.2 1.7E+02 0.0038 29.5 5.4 52 15-67 277-340 (559)
401 cd08300 alcohol_DH_class_III c 22.2 2.1E+02 0.0046 26.4 5.8 36 34-71 185-224 (368)
402 cd08239 THR_DH_like L-threonin 22.2 2.1E+02 0.0046 25.7 5.7 36 34-71 162-201 (339)
403 PRK03525 crotonobetainyl-CoA:c 22.2 90 0.0019 30.0 3.3 32 33-65 11-44 (405)
404 PRK05597 molybdopterin biosynt 22.1 53 0.0011 31.0 1.7 37 32-68 24-62 (355)
405 PRK10309 galactitol-1-phosphat 21.9 1.7E+02 0.0037 26.6 5.1 37 34-72 159-199 (347)
406 PRK06125 short chain dehydroge 21.9 5.1E+02 0.011 22.2 8.5 38 33-71 4-44 (259)
407 PRK00421 murC UDP-N-acetylmura 21.7 1.3E+02 0.0027 29.1 4.3 35 33-68 4-41 (461)
408 PTZ00245 ubiquitin activating 21.6 90 0.0019 28.7 3.0 49 31-84 21-71 (287)
409 PRK05872 short chain dehydroge 21.6 3.1E+02 0.0067 24.4 6.6 39 32-71 5-46 (296)
410 PRK06138 short chain dehydroge 21.4 4.9E+02 0.011 21.9 7.6 37 34-71 3-42 (252)
411 PRK06153 hypothetical protein; 21.3 1.1E+02 0.0024 29.6 3.6 36 33-68 173-210 (393)
412 PRK13529 malate dehydrogenase; 21.1 2E+02 0.0043 29.2 5.5 52 15-67 275-338 (563)
413 PRK06139 short chain dehydroge 21.1 4.9E+02 0.011 23.9 8.0 38 34-72 5-45 (330)
414 PRK07878 molybdopterin biosynt 20.9 54 0.0012 31.3 1.5 46 33-83 39-86 (392)
415 PRK11747 dinG ATP-dependent DN 20.7 2.1E+02 0.0045 29.6 5.8 59 9-67 23-87 (697)
416 PRK12837 3-ketosteroid-delta-1 20.6 89 0.0019 30.8 3.0 32 36-68 7-39 (513)
417 PRK08324 short chain dehydroge 20.4 9.3E+02 0.02 24.6 11.2 38 33-71 419-459 (681)
418 PRK12771 putative glutamate sy 20.3 1.1E+02 0.0025 30.4 3.7 34 33-67 134-169 (564)
419 smart00467 GS GS motif. Aa app 20.3 51 0.0011 19.9 0.8 10 43-52 13-22 (30)
420 cd05213 NAD_bind_Glutamyl_tRNA 20.2 1.4E+02 0.0031 27.3 4.1 35 34-70 176-214 (311)
421 cd08301 alcohol_DH_plants Plan 20.1 2.4E+02 0.0052 25.9 5.7 37 34-72 186-226 (369)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.96 E-value=9.7e-30 Score=216.14 Aligned_cols=155 Identities=29% Similarity=0.403 Sum_probs=99.7
Q ss_pred ccCceeeccHHHHHHHHhhhhhc--CCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 7 DGFLKCWESSIDLVNVLKHEIRD--GQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 7 e~G~~vW~as~~La~~L~~~~~~--~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
.+|.++|+||++|++||..+... ....+++++|||||||+|++||++++. ++.+|++||+++ ++ ++++.|+
T Consensus 15 ~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l-----~~l~~Ni 88 (173)
T PF10294_consen 15 GTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL-----ELLRRNI 88 (173)
T ss_dssp --------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH-----HHHHHHH
T ss_pred CCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hh-----HHHHHHH
Confidence 57999999999999999986321 235789999999999999999999988 777999999988 77 6666666
Q ss_pred HHhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCc
Q 024311 84 EQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSS 163 (269)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 163 (269)
..|.. ....++.+..+||++.... +
T Consensus 89 ~~N~~---------------~~~~~v~v~~L~Wg~~~~~------~---------------------------------- 113 (173)
T PF10294_consen 89 ELNGS---------------LLDGRVSVRPLDWGDELDS------D---------------------------------- 113 (173)
T ss_dssp HTT-----------------------EEEE--TTS-HHH------H----------------------------------
T ss_pred Hhccc---------------cccccccCcEEEecCcccc------c----------------------------------
Confidence 65521 0124677888999873200 0
Q ss_pred ccccccccCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHH
Q 024311 164 SRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSL 243 (269)
Q Consensus 164 ~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~ 243 (269)
.....+||+||+|||+|+++.+++|+++|+++|+ +++.+|+++++|+ .....|+++
T Consensus 114 -------------------~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~-~~~~vl~~~~~R~----~~~~~F~~~ 169 (173)
T PF10294_consen 114 -------------------LLEPHSFDVILASDVLYDEELFEPLVRTLKRLLK-PNGKVLLAYKRRR----KSEQEFFDR 169 (173)
T ss_dssp -------------------HHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBT-T-TTEEEEEE-S-----TGGCHHHHH
T ss_pred -------------------ccccccCCEEEEecccchHHHHHHHHHHHHHHhC-CCCEEEEEeCEec----HHHHHHHHH
Confidence 0134589999999999999999999999999998 6777999998873 467899999
Q ss_pred hhh
Q 024311 244 VDE 246 (269)
Q Consensus 244 ~~~ 246 (269)
+++
T Consensus 170 ~~k 172 (173)
T PF10294_consen 170 LKK 172 (173)
T ss_dssp H--
T ss_pred hhh
Confidence 985
No 2
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=99.95 E-value=6.7e-29 Score=222.48 Aligned_cols=195 Identities=43% Similarity=0.634 Sum_probs=150.8
Q ss_pred CCCCCCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHH
Q 024311 1 MISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL 80 (269)
Q Consensus 1 ~~~g~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~ 80 (269)
++||+||||+++|+||.+|+.++.+.+ ..+..+.||+|||||||+|++|+.+.+.|+.+|+++|+|.++++..+.||+.
T Consensus 83 l~p~vyEGg~k~wecS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~ 161 (282)
T KOG2920|consen 83 LVPGVYEGGLKLWECSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNIL 161 (282)
T ss_pred cCCceeecceEEeecHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeeccccee
Confidence 589999999999999999999999886 4567899999999999999999999999988999999999999999999999
Q ss_pred HHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCccccc
Q 024311 81 ANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQ 160 (269)
Q Consensus 81 ~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 160 (269)
.|...+.. |.+...+......
T Consensus 162 ~~~~~~~~---------------------------~~e~~~~~~i~~s-------------------------------- 182 (282)
T KOG2920|consen 162 VNSHAGVE---------------------------EKENHKVDEILNS-------------------------------- 182 (282)
T ss_pred cchhhhhh---------------------------hhhcccceecccc--------------------------------
Confidence 99866531 1111100000000
Q ss_pred CCcccccccccCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHH
Q 024311 161 DSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHL 240 (269)
Q Consensus 161 ~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F 240 (269)
.++ +|.-.. ....+||+|++|+++|++...+.+....+.+|.+++|++|+|+|+.|||+|+++.+|
T Consensus 183 --------~l~---dg~~~~---t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~yFgVgg~i~~f 248 (282)
T KOG2920|consen 183 --------LLS---DGVFNH---TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKLYFGVGGGIEEF 248 (282)
T ss_pred --------ccc---cchhhh---ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhHhhccCcCcchhhh
Confidence 000 120000 012499999999999999999999644444566699999999999999999999999
Q ss_pred H-HHhhhcCc---eeEEEEeeecCcceEEEEeC
Q 024311 241 R-SLVDEEGI---FGAHLIKEMTDRDIWKFFLK 269 (269)
Q Consensus 241 ~-~~~~~~g~---~~~~~~~~~~~~~i~~~~~~ 269 (269)
- +.|.+... ...+.+.+.-.|.||.+..|
T Consensus 249 ~~~~~~~~d~~~~~~~~~i~~~v~r~i~~~~~~ 281 (282)
T KOG2920|consen 249 NSKLMFDEDVFQISEAKLIRETVKRSILTIEFK 281 (282)
T ss_pred cccccccCCccccccceehhhcCceeEEEEEec
Confidence 4 77777664 35666777779999987654
No 3
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=1.4e-22 Score=168.00 Aligned_cols=170 Identities=26% Similarity=0.366 Sum_probs=129.0
Q ss_pred ccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCC-CCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 7 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCG-YGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 7 e~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcG-tGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
+|-..+||++.+|+.++.+++ -.++|++|||||.| |||.||+.|. ...+.|.+||.|++.+ +|++.-..
T Consensus 5 tgnvciwpseeala~~~l~~~----n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv-----rnv~ki~~ 75 (201)
T KOG3201|consen 5 TGNVCIWPSEEALAWTILRDP----NKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV-----RNVEKIRN 75 (201)
T ss_pred CCcEEecccHHHHHHHHHhch----hHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH-----HHHHHHHh
Confidence 466789999999999999885 46799999999999 6999977664 5567899999999988 56655443
Q ss_pred HhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcc
Q 024311 85 QARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSS 164 (269)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 164 (269)
.|.. +.+ .+|.. +.|..
T Consensus 76 ~n~~-------s~~--------tsc~v--lrw~~---------------------------------------------- 92 (201)
T KOG3201|consen 76 SNMA-------SSL--------TSCCV--LRWLI---------------------------------------------- 92 (201)
T ss_pred cccc-------ccc--------ceehh--hHHHH----------------------------------------------
Confidence 3310 000 12222 12211
Q ss_pred cccccccCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHh
Q 024311 165 RRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLV 244 (269)
Q Consensus 165 ~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~ 244 (269)
|+... .....+||+|++|||+|..+.++.|+++|+.+|+ |.|.|++.++|| |.+++.|++.+
T Consensus 93 -----------~~aqs--q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~-p~g~Al~fsPRR----g~sL~kF~de~ 154 (201)
T KOG3201|consen 93 -----------WGAQS--QQEQHTFDIILAADCLFFDEHHESLVDTIKSLLR-PSGRALLFSPRR----GQSLQKFLDEV 154 (201)
T ss_pred -----------hhhHH--HHhhCcccEEEeccchhHHHHHHHHHHHHHHHhC-cccceeEecCcc----cchHHHHHHHH
Confidence 11111 1245699999999999999999999999999999 889999999886 67999999999
Q ss_pred hhcCceeEEEEeeecCcceEEEEe
Q 024311 245 DEEGIFGAHLIKEMTDRDIWKFFL 268 (269)
Q Consensus 245 ~~~g~~~~~~~~~~~~~~i~~~~~ 268 (269)
+..|| .+. +.|..|..||+++.
T Consensus 155 ~~~gf-~v~-l~enyde~iwqrh~ 176 (201)
T KOG3201|consen 155 GTVGF-TVC-LEENYDEAIWQRHG 176 (201)
T ss_pred Hhcee-EEE-ecccHhHHHHHHHH
Confidence 99995 444 47888888887654
No 4
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.73 E-value=1.1e-17 Score=142.79 Aligned_cols=138 Identities=21% Similarity=0.289 Sum_probs=104.4
Q ss_pred eeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhh
Q 024311 11 KCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQ 90 (269)
Q Consensus 11 ~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~ 90 (269)
..|.+.+.||+|+..++ ..++||+|||+|+|+||+++++++.|++.|+.+|++|..+ .|+.+|...|.
T Consensus 59 ~~WagG~~lAR~i~~~P----etVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-----~ai~lNa~ang--- 126 (218)
T COG3897 59 FAWAGGQVLARYIDDHP----ETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-----QAIRLNAAANG--- 126 (218)
T ss_pred HHHhhhHHHHHHHhcCc----cccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-----HHhhcchhhcc---
Confidence 57999999999999985 5889999999999999999999999999999999998776 88999987652
Q ss_pred ccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccc
Q 024311 91 SRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKL 170 (269)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l 170 (269)
.++.+...| .
T Consensus 127 ----------------v~i~~~~~d--------------~---------------------------------------- 136 (218)
T COG3897 127 ----------------VSILFTHAD--------------L---------------------------------------- 136 (218)
T ss_pred ----------------ceeEEeecc--------------c----------------------------------------
Confidence 122221110 0
Q ss_pred cCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcc-cccccCcchHHHHHHhh
Q 024311 171 SGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-NYVGFNNAARHLRSLVD 245 (269)
Q Consensus 171 ~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~-~~fg~~~~~~~F~~~~~ 245 (269)
. ..+..||+||++|++|+......|+.++.++.. .+..++|.... .|. ...--.|+...+
T Consensus 137 -----------~-g~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~-~g~~vlvgdp~R~~l--pk~~l~~~a~yq 197 (218)
T COG3897 137 -----------I-GSPPAFDLLLAGDLFYNHTEADRLIPWKDRLAE-AGAAVLVGDPGRAYL--PKKRLEFLAIYQ 197 (218)
T ss_pred -----------c-CCCcceeEEEeeceecCchHHHHHHHHHHHHHh-CCCEEEEeCCCCCCC--chhhhhhhhhcc
Confidence 0 145699999999999999999999998888766 44445555444 343 333445554433
No 5
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.72 E-value=1.1e-16 Score=142.63 Aligned_cols=179 Identities=23% Similarity=0.242 Sum_probs=119.3
Q ss_pred cCceeeccHHHHHHHHhhhhhcC-----CCCC--CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHH
Q 024311 8 GFLKCWESSIDLVNVLKHEIRDG-----QLSF--RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL 80 (269)
Q Consensus 8 ~G~~vW~as~~La~~L~~~~~~~-----~~~~--~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~ 80 (269)
-.+.+|+++-.+++++.....++ ...+ +.++|||||+|||++|+++|.....+|++||... ++ +|+.
T Consensus 52 ~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~-----~~L~ 125 (248)
T KOG2793|consen 52 ISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VV-----ENLK 125 (248)
T ss_pred eeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchh-hH-----HHHH
Confidence 46789999999999998775421 1112 3567999999999999999985555999999954 44 4555
Q ss_pred HHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCccccc
Q 024311 81 ANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQ 160 (269)
Q Consensus 81 ~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 160 (269)
.|...|....+. ...+|....++|++.+...
T Consensus 126 ~~~~~~~~~l~~------------~g~~v~v~~L~Wg~~~~~~------------------------------------- 156 (248)
T KOG2793|consen 126 FNRDKNNIALNQ------------LGGSVIVAILVWGNALDVS------------------------------------- 156 (248)
T ss_pred Hhhhhhhhhhhh------------cCCceeEEEEecCCcccHh-------------------------------------
Confidence 554333222211 1236777788999864210
Q ss_pred CCcccccccccCchhhhhhcccccCCCC-ccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHH
Q 024311 161 DSSSRRSRKLSGSRAWERASEADQGEGG-YDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARH 239 (269)
Q Consensus 161 ~~~~~~~~~l~gs~~W~~~~~~~~~~~~-fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~ 239 (269)
..... ||+||+|||+|++..++.|+.+|..+|. .+++++++++.|.- .....
T Consensus 157 -----------------------~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~-~~~~i~l~~~lr~~---~~~~~ 209 (248)
T KOG2793|consen 157 -----------------------FRLPNPFDLILASDVVYEEESFEGLVKTLAFLLA-KDGTIFLAYPLRRD---AAWEI 209 (248)
T ss_pred -----------------------hccCCcccEEEEeeeeecCCcchhHHHHHHHHHh-cCCeEEEEEecccc---hHHHH
Confidence 01112 9999999999999999999999999998 55689999887641 11222
Q ss_pred HHHHhh-hcCceeEEEEeeecCcceEEEEe
Q 024311 240 LRSLVD-EEGIFGAHLIKEMTDRDIWKFFL 268 (269)
Q Consensus 240 F~~~~~-~~g~~~~~~~~~~~~~~i~~~~~ 268 (269)
+.-+++ ..+.+.+......++.+-|+.++
T Consensus 210 ~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~ 239 (248)
T KOG2793|consen 210 EVLLFKKDLKIFDVVQESFFKDQESFRIGR 239 (248)
T ss_pred HHHHhhhhhccceeeeEeccCcceeeeeee
Confidence 222222 33445555556666666666554
No 6
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.45 E-value=4.9e-12 Score=106.88 Aligned_cols=147 Identities=20% Similarity=0.314 Sum_probs=95.7
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCC-eEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhcc
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRCTTVPNVLANLEQARERQSR 92 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~-~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~ 92 (269)
.++..|++++... .+++|||||||+|..|+.++..++. +|+++|.++.++ ...+.|+..|.
T Consensus 18 ~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~-----~~a~~n~~~n~----- 79 (170)
T PF05175_consen 18 AGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL-----ELAKRNAERNG----- 79 (170)
T ss_dssp HHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH-----HHHHHHHHHTT-----
T ss_pred HHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH-----HHHHHHHHhcC-----
Confidence 4677888888775 4679999999999999999988775 799999999998 44555655441
Q ss_pred CCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 024311 93 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG 172 (269)
Q Consensus 93 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~g 172 (269)
.. +++++..|+-+.
T Consensus 80 ------------~~-~v~~~~~d~~~~----------------------------------------------------- 93 (170)
T PF05175_consen 80 ------------LE-NVEVVQSDLFEA----------------------------------------------------- 93 (170)
T ss_dssp ------------CT-TEEEEESSTTTT-----------------------------------------------------
T ss_pred ------------cc-cccccccccccc-----------------------------------------------------
Confidence 11 155544443321
Q ss_pred chhhhhhcccccCCCCccEEEEeccccccC-----CHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhc
Q 024311 173 SRAWERASEADQGEGGYDVILLTEIPYSVT-----SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEE 247 (269)
Q Consensus 173 s~~W~~~~~~~~~~~~fDlIlasD~iY~~~-----~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~ 247 (269)
....+||+|++.=.++.-. ....+++...++|+ |+|.+++...+.. +.... +++.
T Consensus 94 -----------~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk-~~G~l~lv~~~~~-----~~~~~---l~~~ 153 (170)
T PF05175_consen 94 -----------LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLK-PGGRLFLVINSHL-----GYERL---LKEL 153 (170)
T ss_dssp -----------CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEE-EEEEEEEEEETTS-----CHHHH---HHHH
T ss_pred -----------ccccceeEEEEccchhcccccchhhHHHHHHHHHHhcc-CCCEEEEEeecCC-----ChHHH---HHHh
Confidence 1346999999965544333 25667777788998 8999988765432 23333 3322
Q ss_pred CceeEEEEeeecCcceEE
Q 024311 248 GIFGAHLIKEMTDRDIWK 265 (269)
Q Consensus 248 g~~~~~~~~~~~~~~i~~ 265 (269)
|-.++++.+....-||+
T Consensus 154 -f~~~~~~~~~~~~~v~~ 170 (170)
T PF05175_consen 154 -FGDVEVVAKNKGFRVLR 170 (170)
T ss_dssp -HS--EEEEEESSEEEEE
T ss_pred -cCCEEEEEECCCEEEeC
Confidence 33566766666665554
No 7
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.42 E-value=8.1e-12 Score=116.03 Aligned_cols=137 Identities=20% Similarity=0.249 Sum_probs=97.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.++|++|||+|||+|..++.++..|+++|++.|.++.++.. .+...+... ...++++.
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q---~~a~~~~~~-------------------~~~~i~~~ 177 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQ---FEAVRKLLG-------------------NDQRAHLL 177 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHH---HHHHHHhcC-------------------CCCCeEEE
Confidence 45789999999999999998888898889999999877632 222211100 01346665
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.++.++.+ ...+||+|
T Consensus 178 ~~d~e~lp----------------------------------------------------------------~~~~FD~V 193 (322)
T PRK15068 178 PLGIEQLP----------------------------------------------------------------ALKAFDTV 193 (322)
T ss_pred eCCHHHCC----------------------------------------------------------------CcCCcCEE
Confidence 55543321 14589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEc-------------cccccc-----CcchHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATK-------------KNYVGF-----NNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k-------------~~~fg~-----~~~~~~F~~~~~~~g~~~~~~ 254 (269)
++..++|+..+...+++.+.+.|+ |+|.+++.+- .+|... -.+..++.+.+++.||-..++
T Consensus 194 ~s~~vl~H~~dp~~~L~~l~~~Lk-pGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~ 272 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLKQLKDQLV-PGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRI 272 (322)
T ss_pred EECChhhccCCHHHHHHHHHHhcC-CCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEE
Confidence 999999999999999999999998 8998876531 122111 125678899999999866666
Q ss_pred Ee
Q 024311 255 IK 256 (269)
Q Consensus 255 ~~ 256 (269)
+.
T Consensus 273 ~~ 274 (322)
T PRK15068 273 VD 274 (322)
T ss_pred Ee
Confidence 43
No 8
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.41 E-value=1.9e-11 Score=103.67 Aligned_cols=127 Identities=20% Similarity=0.236 Sum_probs=86.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++++|||||||+|..++.++..+. +|+++|+++++++. .+.|...+. .++++..+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~~~~-------------------~~~~~~~~ 73 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKE-----LRENAKLNN-------------------VGLDVVMT 73 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHH-----HHHHHHHcC-------------------CceEEEEc
Confidence 467899999999999999998887 89999999999843 344443220 12344444
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|+... ...+||+|++
T Consensus 74 d~~~~-----------------------------------------------------------------~~~~fD~Vi~ 88 (179)
T TIGR00537 74 DLFKG-----------------------------------------------------------------VRGKFDVILF 88 (179)
T ss_pred ccccc-----------------------------------------------------------------cCCcccEEEE
Confidence 43221 1237898887
Q ss_pred eccccccC---------------------CHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEE
Q 024311 195 TEIPYSVT---------------------SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAH 253 (269)
Q Consensus 195 sD~iY~~~---------------------~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~ 253 (269)
+-..+... .++.+++.+.++|+ |+|++++..... .+..++++.+++.|+ ..+
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~~~~~~~~~-----~~~~~~~~~l~~~gf-~~~ 161 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILK-EGGRVQLIQSSL-----NGEPDTFDKLDERGF-RYE 161 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhC-CCCEEEEEEecc-----CChHHHHHHHHhCCC-eEE
Confidence 64433221 14567888888998 889888765432 247889999999996 555
Q ss_pred EEeee
Q 024311 254 LIKEM 258 (269)
Q Consensus 254 ~~~~~ 258 (269)
++.+.
T Consensus 162 ~~~~~ 166 (179)
T TIGR00537 162 IVAER 166 (179)
T ss_pred EEEEe
Confidence 55543
No 9
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.40 E-value=1e-11 Score=114.93 Aligned_cols=152 Identities=20% Similarity=0.214 Sum_probs=100.7
Q ss_pred eccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhcc
Q 024311 13 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 92 (269)
Q Consensus 13 W~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~ 92 (269)
|.+.+.....+... ...+|++|||+|||+|...+.++..|+.+|++.|.++.++..+ ..++....
T Consensus 104 ~~s~~~~~~~l~~l-----~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~--~~~~~~~~-------- 168 (314)
T TIGR00452 104 WRSDIKWDRVLPHL-----SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF--EAVRKLLD-------- 168 (314)
T ss_pred HHHHHHHHHHHHhc-----CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHHhc--------
Confidence 55554444444332 2467999999999999998888888888899999999887432 11211110
Q ss_pred CCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 024311 93 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG 172 (269)
Q Consensus 93 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~g 172 (269)
...++++..++.++.+
T Consensus 169 ------------~~~~v~~~~~~ie~lp---------------------------------------------------- 184 (314)
T TIGR00452 169 ------------NDKRAILEPLGIEQLH---------------------------------------------------- 184 (314)
T ss_pred ------------cCCCeEEEECCHHHCC----------------------------------------------------
Confidence 0123333333322110
Q ss_pred chhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcc-------------ccc-----ccC
Q 024311 173 SRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-------------NYV-----GFN 234 (269)
Q Consensus 173 s~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~-------------~~f-----g~~ 234 (269)
....||+|++..++|+..+....++.++++|+ |+|.+++.+.. +|. -..
T Consensus 185 ------------~~~~FD~V~s~gvL~H~~dp~~~L~el~r~Lk-pGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~fl 251 (314)
T TIGR00452 185 ------------ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLV-IKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFI 251 (314)
T ss_pred ------------CCCCcCEEEEcchhhccCCHHHHHHHHHHhcC-CCCEEEEEEEEecCccccccCchHHHHhccccccC
Confidence 12379999999999999999999999999999 89988875311 110 011
Q ss_pred cchHHHHHHhhhcCceeEEEEe
Q 024311 235 NAARHLRSLVDEEGIFGAHLIK 256 (269)
Q Consensus 235 ~~~~~F~~~~~~~g~~~~~~~~ 256 (269)
.+..+....+++.||-.++++.
T Consensus 252 pS~~~L~~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 252 PSVSALKNWLEKVGFENFRILD 273 (314)
T ss_pred CCHHHHHHHHHHCCCeEEEEEe
Confidence 2566778889999997766643
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.39 E-value=6.4e-12 Score=97.59 Aligned_cols=106 Identities=23% Similarity=0.313 Sum_probs=75.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
++.+|||||||+|..++.+++ .+..+|++.|+++++++. .+.|.... ...++++++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~i~~~~ 58 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEI-----ARERAAEE-----------------GLSDRITFVQ 58 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHH-----HHHHHHHT-----------------TTTTTEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHH-----HHHHHHhc-----------------CCCCCeEEEE
Confidence 478999999999999999888 234489999999999954 44444221 1235788887
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
.|+ ... .....+||+|+
T Consensus 59 ~d~-~~~--------------------------------------------------------------~~~~~~~D~v~ 75 (112)
T PF12847_consen 59 GDA-EFD--------------------------------------------------------------PDFLEPFDLVI 75 (112)
T ss_dssp SCC-HGG--------------------------------------------------------------TTTSSCEEEEE
T ss_pred Ccc-ccC--------------------------------------------------------------cccCCCCCEEE
Confidence 777 210 01344799999
Q ss_pred Eec-ccccc---CCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 194 LTE-IPYSV---TSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 194 asD-~iY~~---~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+.. +.... +....+++.+.++|+ |+|+++|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLK-PGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 988 33212 345678889999999 899999875
No 11
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.38 E-value=1.4e-11 Score=113.02 Aligned_cols=62 Identities=27% Similarity=0.344 Sum_probs=50.5
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
+......++|.+. ..+|++|||+|||+|+++|+|+++||++|+++|++|..+ .+.+.|+..|
T Consensus 146 ~TT~lcl~~l~~~------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av-----~~a~~N~~~N 207 (295)
T PF06325_consen 146 PTTRLCLELLEKY------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAV-----EAARENAELN 207 (295)
T ss_dssp HHHHHHHHHHHHH------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHH-----HHHHHHHHHT
T ss_pred HHHHHHHHHHHHh------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHH-----HHHHHHHHHc
Confidence 5566667777765 457889999999999999999999999999999999988 5566666555
No 12
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.3e-11 Score=112.86 Aligned_cols=140 Identities=24% Similarity=0.245 Sum_probs=95.4
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccC
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ 93 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~ 93 (269)
+....-.++|.+. ..+|++|||+|||+|+++|+|+++||++|+++|++|..++- .+.|+++|-..
T Consensus 147 pTT~lcL~~Le~~------~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~a-a~eNa~~N~v~-------- 211 (300)
T COG2264 147 PTTSLCLEALEKL------LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEA-ARENARLNGVE-------- 211 (300)
T ss_pred hhHHHHHHHHHHh------hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHH-HHHHHHHcCCc--------
Confidence 5555666677665 34899999999999999999999999999999999998854 34566555311
Q ss_pred CCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 024311 94 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS 173 (269)
Q Consensus 94 ~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs 173 (269)
..++. .....
T Consensus 212 -------------~~~~~---~~~~~------------------------------------------------------ 221 (300)
T COG2264 212 -------------LLVQA---KGFLL------------------------------------------------------ 221 (300)
T ss_pred -------------hhhhc---ccccc------------------------------------------------------
Confidence 00000 00000
Q ss_pred hhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEE
Q 024311 174 RAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAH 253 (269)
Q Consensus 174 ~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~ 253 (269)
......++||+|+|. ++=+ -+..|+.-+.++++ |+|.+.++.-- .+....+.+.++++||...+
T Consensus 222 -------~~~~~~~~~DvIVAN-ILA~--vl~~La~~~~~~lk-pgg~lIlSGIl-----~~q~~~V~~a~~~~gf~v~~ 285 (300)
T COG2264 222 -------LEVPENGPFDVIVAN-ILAE--VLVELAPDIKRLLK-PGGRLILSGIL-----EDQAESVAEAYEQAGFEVVE 285 (300)
T ss_pred -------hhhcccCcccEEEeh-hhHH--HHHHHHHHHHHHcC-CCceEEEEeeh-----HhHHHHHHHHHHhCCCeEeE
Confidence 001234699999983 3222 24477888888998 88988887522 23578899999999985444
Q ss_pred E
Q 024311 254 L 254 (269)
Q Consensus 254 ~ 254 (269)
+
T Consensus 286 ~ 286 (300)
T COG2264 286 V 286 (300)
T ss_pred E
Confidence 4
No 13
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.35 E-value=2e-11 Score=113.46 Aligned_cols=131 Identities=17% Similarity=0.252 Sum_probs=92.5
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
...+.+|||+|||+|.+++.++..|+ +|++.|.++++++.+ +.+..... ...++.+.
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~A-----r~~~~~~~-----------------~~~~i~~~ 185 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIA-----RLHADMDP-----------------VTSTIEYL 185 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHH-----HHHHHhcC-----------------cccceeEE
Confidence 35788999999999999998888877 899999999998543 22221110 01234444
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.++-++.+ ...++||+|
T Consensus 186 ~~dae~l~---------------------------------------------------------------~~~~~FD~V 202 (322)
T PLN02396 186 CTTAEKLA---------------------------------------------------------------DEGRKFDAV 202 (322)
T ss_pred ecCHHHhh---------------------------------------------------------------hccCCCCEE
Confidence 33322110 134589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc-----------------ccC-------cchHHHHHHhhhcC
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV-----------------GFN-------NAARHLRSLVDEEG 248 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f-----------------g~~-------~~~~~F~~~~~~~g 248 (269)
++.+++++..+.+.+++.+.++|+ |+|.+++++-.+.+ ..+ -...++...+++.|
T Consensus 203 i~~~vLeHv~d~~~~L~~l~r~Lk-PGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aG 281 (322)
T PLN02396 203 LSLEVIEHVANPAEFCKSLSALTI-PNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRAS 281 (322)
T ss_pred EEhhHHHhcCCHHHHHHHHHHHcC-CCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcC
Confidence 999999999999999999999999 99999988532210 001 13577888888998
Q ss_pred ce
Q 024311 249 IF 250 (269)
Q Consensus 249 ~~ 250 (269)
+-
T Consensus 282 f~ 283 (322)
T PLN02396 282 VD 283 (322)
T ss_pred Ce
Confidence 73
No 14
>PLN02244 tocopherol O-methyltransferase
Probab=99.34 E-value=5.7e-11 Score=111.09 Aligned_cols=134 Identities=21% Similarity=0.252 Sum_probs=95.0
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.++.+|||+|||+|...+.++.. ++ +|++.|+++.+++.+ +.+...+ ....+++|.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a-----~~~~~~~-----------------g~~~~v~~~ 173 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARA-----NALAAAQ-----------------GLSDKVSFQ 173 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHH-----HHHHHhc-----------------CCCCceEEE
Confidence 46789999999999999887764 55 899999999988442 2232211 012356666
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.+ ..++.||+|
T Consensus 174 ~~D~~~~~---------------------------------------------------------------~~~~~FD~V 190 (340)
T PLN02244 174 VADALNQP---------------------------------------------------------------FEDGQFDLV 190 (340)
T ss_pred EcCcccCC---------------------------------------------------------------CCCCCccEE
Confidence 66544321 134689999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcc-c------------------------ccccCcchHHHHHHhhhc
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-N------------------------YVGFNNAARHLRSLVDEE 247 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~-~------------------------~fg~~~~~~~F~~~~~~~ 247 (269)
++.+++++..+...+++.+.++|+ |+|+++++.-. + ++....+..++...+++.
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rvLk-pGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~a 269 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARVAA-PGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESL 269 (340)
T ss_pred EECCchhccCCHHHHHHHHHHHcC-CCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHC
Confidence 999999999899999999999999 89998886311 0 110111467888999999
Q ss_pred CceeEEE
Q 024311 248 GIFGAHL 254 (269)
Q Consensus 248 g~~~~~~ 254 (269)
||..+++
T Consensus 270 Gf~~v~~ 276 (340)
T PLN02244 270 GLQDIKT 276 (340)
T ss_pred CCCeeEe
Confidence 9855544
No 15
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.33 E-value=3.5e-12 Score=112.64 Aligned_cols=110 Identities=22% Similarity=0.358 Sum_probs=80.7
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.+.|++|||+|||-|+++.-+|+.|+ +|++.|.+++.++... +-...+ .-++
T Consensus 57 ~l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak-----~ha~e~-------------------gv~i--- 108 (243)
T COG2227 57 DLPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAK-----LHALES-------------------GVNI--- 108 (243)
T ss_pred CCCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHH-----Hhhhhc-------------------cccc---
Confidence 37899999999999999999999997 8999999998875431 111000 0011
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
||.... +++ .....++||+|
T Consensus 109 --~y~~~~-------------------------------------~ed---------------------l~~~~~~FDvV 128 (243)
T COG2227 109 --DYRQAT-------------------------------------VED---------------------LASAGGQFDVV 128 (243)
T ss_pred --cchhhh-------------------------------------HHH---------------------HHhcCCCccEE
Confidence 111110 000 00133799999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV 231 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f 231 (269)
++-|++-+.++.+.+++.+.++++ |+|++++++-.|++
T Consensus 129 ~cmEVlEHv~dp~~~~~~c~~lvk-P~G~lf~STinrt~ 166 (243)
T COG2227 129 TCMEVLEHVPDPESFLRACAKLVK-PGGILFLSTINRTL 166 (243)
T ss_pred EEhhHHHccCCHHHHHHHHHHHcC-CCcEEEEeccccCH
Confidence 999999999999999999999999 89999999766543
No 16
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.29 E-value=3.2e-11 Score=99.57 Aligned_cols=108 Identities=24% Similarity=0.383 Sum_probs=81.5
Q ss_pred CCCEEEEEcCCCCHHHHHHH-HcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFAC-LKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa-~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++.+|||||||+|..++.++ ..+ ..+|++.|+++++++.+ +.++... .. ++++|.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a-----~~~~~~~-----------------~~-~ni~~~ 59 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYA-----KKRAKEL-----------------GL-DNIEFI 59 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHH-----HHHHHHT-----------------TS-TTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHh-----hcccccc-----------------cc-cccceE
Confidence 57899999999999998888 443 35899999999999654 2222211 01 267887
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|+.+.+. ...++||+|
T Consensus 60 ~~d~~~l~~--------------------------------------------------------------~~~~~~D~I 77 (152)
T PF13847_consen 60 QGDIEDLPQ--------------------------------------------------------------ELEEKFDII 77 (152)
T ss_dssp ESBTTCGCG--------------------------------------------------------------CSSTTEEEE
T ss_pred Eeehhcccc--------------------------------------------------------------ccCCCeeEE
Confidence 777765320 011699999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcc
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK 228 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~ 228 (269)
++..++|+......+++.+.++|+ ++|++++....
T Consensus 78 ~~~~~l~~~~~~~~~l~~~~~~lk-~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFPDPEKVLKNIIRLLK-PGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTSHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred EEcCchhhccCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence 999999999999999999999999 89999888655
No 17
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.28 E-value=3.6e-11 Score=89.66 Aligned_cols=95 Identities=24% Similarity=0.391 Sum_probs=68.6
Q ss_pred EEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCc
Q 024311 40 LELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEEL 119 (269)
Q Consensus 40 LELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~ 119 (269)
||+|||+|.....++..+..+|+++|.++++++. .+.+.. ...+.+...|....
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~-----~~~~~~---------------------~~~~~~~~~d~~~l 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQ-----ARKRLK---------------------NEGVSFRQGDAEDL 54 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHH-----HHHHTT---------------------TSTEEEEESBTTSS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHH-----HHhccc---------------------ccCchheeehHHhC
Confidence 8999999999988888756699999999998843 232221 01223444443332
Q ss_pred chhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEecccc
Q 024311 120 PTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPY 199 (269)
Q Consensus 120 ~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY 199 (269)
+ ..++.||+|++..+++
T Consensus 55 ~---------------------------------------------------------------~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 55 P---------------------------------------------------------------FPDNSFDVVFSNSVLH 71 (95)
T ss_dssp S---------------------------------------------------------------S-TT-EEEEEEESHGG
T ss_pred c---------------------------------------------------------------ccccccccccccccee
Confidence 1 2456999999999999
Q ss_pred ccCCHHHHHHHHHHhcCCCCeEEEE
Q 024311 200 SVTSLKKLYLLIKKCLRPPYGVVYL 224 (269)
Q Consensus 200 ~~~~~~~L~~~l~~~L~~p~g~~~v 224 (269)
+.+..+.+++.+.++|+ |+|++++
T Consensus 72 ~~~~~~~~l~e~~rvLk-~gG~l~~ 95 (95)
T PF08241_consen 72 HLEDPEAALREIYRVLK-PGGRLVI 95 (95)
T ss_dssp GSSHHHHHHHHHHHHEE-EEEEEEE
T ss_pred eccCHHHHHHHHHHHcC-cCeEEeC
Confidence 99999999999999999 8998875
No 18
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.28 E-value=1.1e-11 Score=110.59 Aligned_cols=111 Identities=22% Similarity=0.345 Sum_probs=78.9
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCcc-CCCCeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQ-TLAPSVHF 111 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 111 (269)
.+.|++|||+|||+||++.-+|+.|+ .|++.|..+++++- .|.. ... + |... ....+++|
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~v---A~~h--~~~---------d----P~~~~~~~y~l~~ 147 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEV---ANEH--KKM---------D----PVLEGAIAYRLEY 147 (282)
T ss_pred ccCCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHH---HHHh--hhc---------C----chhccccceeeeh
Confidence 34578999999999999999999998 89999999998843 2221 100 0 1000 00111111
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
.+.+-+ ...++||.
T Consensus 148 ~~~~~E------------------------------------------------------------------~~~~~fDa 161 (282)
T KOG1270|consen 148 EDTDVE------------------------------------------------------------------GLTGKFDA 161 (282)
T ss_pred hhcchh------------------------------------------------------------------hcccccce
Confidence 111110 13456999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccc
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN 229 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~ 229 (269)
|+++|++.+..+.+.+++.+-++|+ |+|..+|++-.+
T Consensus 162 VvcsevleHV~dp~~~l~~l~~~lk-P~G~lfittinr 198 (282)
T KOG1270|consen 162 VVCSEVLEHVKDPQEFLNCLSALLK-PNGRLFITTINR 198 (282)
T ss_pred eeeHHHHHHHhCHHHHHHHHHHHhC-CCCceEeeehhh
Confidence 9999999999999999999999999 889999997554
No 19
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.26 E-value=3.9e-10 Score=100.99 Aligned_cols=134 Identities=24% Similarity=0.299 Sum_probs=91.9
Q ss_pred eccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhcc
Q 024311 13 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 92 (269)
Q Consensus 13 W~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~ 92 (269)
.+.+..+.++|... ..++++|||+|||+|..++.+++.|+.+|+++|+++.+++ ..+.|...+.
T Consensus 103 h~tt~~~l~~l~~~------~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~-----~A~~n~~~~~----- 166 (250)
T PRK00517 103 HPTTRLCLEALEKL------VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVE-----AARENAELNG----- 166 (250)
T ss_pred CHHHHHHHHHHHhh------cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHH-----HHHHHHHHcC-----
Confidence 56667777777654 2368899999999999999999999878999999999984 4455554321
Q ss_pred CCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 024311 93 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG 172 (269)
Q Consensus 93 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~g 172 (269)
+...+.+ .
T Consensus 167 ------------~~~~~~~-----------------------------------------------------------~- 174 (250)
T PRK00517 167 ------------VELNVYL-----------------------------------------------------------P- 174 (250)
T ss_pred ------------CCceEEE-----------------------------------------------------------c-
Confidence 0001100 0
Q ss_pred chhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeE
Q 024311 173 SRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGA 252 (269)
Q Consensus 173 s~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~ 252 (269)
....+||+|++. .. ...+..++..+.++|+ |+|.++++.-.. .....+...+++.|+...
T Consensus 175 -----------~~~~~fD~Vvan-i~--~~~~~~l~~~~~~~Lk-pgG~lilsgi~~-----~~~~~v~~~l~~~Gf~~~ 234 (250)
T PRK00517 175 -----------QGDLKADVIVAN-IL--ANPLLELAPDLARLLK-PGGRLILSGILE-----EQADEVLEAYEEAGFTLD 234 (250)
T ss_pred -----------cCCCCcCEEEEc-Cc--HHHHHHHHHHHHHhcC-CCcEEEEEECcH-----hhHHHHHHHHHHCCCEEE
Confidence 011279999984 22 2335677888888998 899998875332 246788899999997444
Q ss_pred EE
Q 024311 253 HL 254 (269)
Q Consensus 253 ~~ 254 (269)
++
T Consensus 235 ~~ 236 (250)
T PRK00517 235 EV 236 (250)
T ss_pred EE
Confidence 33
No 20
>PRK14967 putative methyltransferase; Provisional
Probab=99.23 E-value=5.6e-10 Score=98.14 Aligned_cols=54 Identities=33% Similarity=0.425 Sum_probs=43.2
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.+..|++.+.... ...+.+|||+|||+|..++.++..++.+|+++|+++.+++.
T Consensus 21 ds~~l~~~l~~~~-----~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~ 74 (223)
T PRK14967 21 DTQLLADALAAEG-----LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRS 74 (223)
T ss_pred cHHHHHHHHHhcc-----cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 4566777776531 23567999999999999999888877799999999998843
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.21 E-value=2.3e-10 Score=98.98 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=34.6
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.++.+|||+|||+|..++.++..|. +|++.|.++.+++.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~ 67 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIAN 67 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 3578999999999999999988876 89999999999854
No 22
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.21 E-value=7.1e-10 Score=100.02 Aligned_cols=134 Identities=23% Similarity=0.319 Sum_probs=92.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHHH-cCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACL-KGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~-~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
-.|.+|||+|||+|..++.++. .++ .+|+++|.++.+++. .+.|..... ..++++
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~-----A~~~~~~~g------------------~~~v~~ 132 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAK-----ARANARKAG------------------YTNVEF 132 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHH-----HHHHHHHcC------------------CCCEEE
Confidence 3688999999999998876654 354 379999999999854 334442210 124555
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|++..+ ...+.||+
T Consensus 133 ~~~d~~~l~---------------------------------------------------------------~~~~~fD~ 149 (272)
T PRK11873 133 RLGEIEALP---------------------------------------------------------------VADNSVDV 149 (272)
T ss_pred EEcchhhCC---------------------------------------------------------------CCCCceeE
Confidence 555543321 12358999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcc--------------cccc---cCcchHHHHHHhhhcCceeEEE
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK--------------NYVG---FNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~--------------~~fg---~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
|++.-+++.....+.+++.+.++|+ |+|++++..-. .+.+ ......++.+.+++.||...++
T Consensus 150 Vi~~~v~~~~~d~~~~l~~~~r~Lk-pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 150 IISNCVINLSPDKERVFKEAFRVLK-PGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred EEEcCcccCCCCHHHHHHHHHHHcC-CCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence 9998888888888999999999999 89998885210 0101 0124678999999999865544
No 23
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.19 E-value=6.7e-10 Score=101.59 Aligned_cols=54 Identities=22% Similarity=0.333 Sum_probs=43.2
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+......++|... ..++++|||+|||+|..++.+++.|+++|+++|+++.+++.
T Consensus 144 ~tt~l~l~~l~~~------~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~ 197 (288)
T TIGR00406 144 PTTSLCLEWLEDL------DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVES 197 (288)
T ss_pred HHHHHHHHHHHhh------cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 5555555555543 23678999999999999999999998899999999999843
No 24
>PRK14968 putative methyltransferase; Provisional
Probab=99.19 E-value=2.7e-09 Score=90.08 Aligned_cols=58 Identities=28% Similarity=0.358 Sum_probs=45.1
Q ss_pred CCCCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 3 SSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 3 ~g~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+|+|.- ++-+..|++++.. .++++|||+|||+|..++.++..+. +|+++|+++++++.
T Consensus 3 ~~~~~p----~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~ 60 (188)
T PRK14968 3 DEVYEP----AEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVEC 60 (188)
T ss_pred CcccCc----chhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHH
Confidence 556633 5667777777643 3677999999999999988887754 89999999999843
No 25
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.19 E-value=1.3e-09 Score=95.95 Aligned_cols=155 Identities=21% Similarity=0.280 Sum_probs=99.9
Q ss_pred HHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCC
Q 024311 20 VNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLT 99 (269)
Q Consensus 20 a~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~ 99 (269)
++|+.... ...++++|||||||+|..+..++..++ +|+++|.++.++. ..+.|....
T Consensus 37 ~~~l~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~-----~a~~~~~~~------------- 93 (233)
T PRK05134 37 LNYIREHA----GGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIE-----VARLHALES------------- 93 (233)
T ss_pred HHHHHHhc----cCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHH-----HHHHHHHHc-------------
Confidence 34555543 245788999999999999988888776 7999999999873 334443221
Q ss_pred CCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhh
Q 024311 100 PSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERA 179 (269)
Q Consensus 100 ~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~ 179 (269)
...+++...++...+
T Consensus 94 ------~~~~~~~~~~~~~~~----------------------------------------------------------- 108 (233)
T PRK05134 94 ------GLKIDYRQTTAEELA----------------------------------------------------------- 108 (233)
T ss_pred ------CCceEEEecCHHHhh-----------------------------------------------------------
Confidence 011223222222110
Q ss_pred cccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccc--------------ccc----------cCc
Q 024311 180 SEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN--------------YVG----------FNN 235 (269)
Q Consensus 180 ~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~--------------~fg----------~~~ 235 (269)
+ ...++||+|+++.++.+......+++.+.++|+ |+|.++++...+ .++ .--
T Consensus 109 -~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (233)
T PRK05134 109 -A--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVK-PGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFI 184 (233)
T ss_pred -h--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcC-CCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcC
Confidence 0 123589999999999999899999999999998 889988874211 000 001
Q ss_pred chHHHHHHhhhcCceeEEEE--eeecCcceEEE
Q 024311 236 AARHLRSLVDEEGIFGAHLI--KEMTDRDIWKF 266 (269)
Q Consensus 236 ~~~~F~~~~~~~g~~~~~~~--~~~~~~~i~~~ 266 (269)
...++.+.+++.|+-..+.. ....-..+|+.
T Consensus 185 ~~~~~~~~l~~~Gf~~v~~~~~~~~~~~~~~~~ 217 (233)
T PRK05134 185 KPSELAAWLRQAGLEVQDITGLHYNPLTNRWKL 217 (233)
T ss_pred CHHHHHHHHHHCCCeEeeeeeEEechhhcceee
Confidence 34568889999998544432 22234556654
No 26
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.18 E-value=1.6e-09 Score=93.33 Aligned_cols=118 Identities=25% Similarity=0.311 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
++.+|||+|||+|..++.+++ .+..+|++.|.++++++.+ +.|...+. . +++++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A-----~~~~~~~~-----------------l-~~i~~~~ 101 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFL-----REVAAELG-----------------L-KNVTVVH 101 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHH-----HHHHHHcC-----------------C-CCEEEEe
Confidence 388999999999999988775 4446999999999998543 34443220 1 1255544
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+. ...++||+|+
T Consensus 102 ~d~~~~----------------------------------------------------------------~~~~~fDlV~ 117 (187)
T PRK00107 102 GRAEEF----------------------------------------------------------------GQEEKFDVVT 117 (187)
T ss_pred ccHhhC----------------------------------------------------------------CCCCCccEEE
Confidence 443221 0135899999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCce
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~ 250 (269)
+.. ...++.+++.+.++|+ |+|++++..... ...++.+..+..|+.
T Consensus 118 ~~~----~~~~~~~l~~~~~~Lk-pGG~lv~~~~~~------~~~~l~~~~~~~~~~ 163 (187)
T PRK00107 118 SRA----VASLSDLVELCLPLLK-PGGRFLALKGRD------PEEEIAELPKALGGK 163 (187)
T ss_pred Ecc----ccCHHHHHHHHHHhcC-CCeEEEEEeCCC------hHHHHHHHHHhcCce
Confidence 853 2457889999999999 899988775443 356788887888874
No 27
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.18 E-value=6.5e-10 Score=95.17 Aligned_cols=122 Identities=21% Similarity=0.313 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
+++.+|||+|||+|..++.++..+ ..+|++.|.++.+++. ++.|...+. . .+++++
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~-----a~~~~~~~~-----------------~-~~i~~i 97 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAF-----LREVKAELG-----------------L-NNVEIV 97 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHH-----HHHHHHHhC-----------------C-CCeEEE
Confidence 468899999999999998877654 3589999999998854 233332210 1 245666
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+. ...++||+|
T Consensus 98 ~~d~~~~----------------------------------------------------------------~~~~~fD~I 113 (181)
T TIGR00138 98 NGRAEDF----------------------------------------------------------------QHEEQFDVI 113 (181)
T ss_pred ecchhhc----------------------------------------------------------------cccCCccEE
Confidence 5554431 023589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCce
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~ 250 (269)
++ +. ...++.+++.+.++|+ |+|++++.....+. ..+....+.+...|+.
T Consensus 114 ~s-~~---~~~~~~~~~~~~~~Lk-pgG~lvi~~~~~~~---~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 114 TS-RA---LASLNVLLELTLNLLK-VGGYFLAYKGKKYL---DEIEEAKRKCQVLGVE 163 (181)
T ss_pred Ee-hh---hhCHHHHHHHHHHhcC-CCCEEEEEcCCCcH---HHHHHHHHhhhhcCce
Confidence 87 44 2357788888999998 89998876433221 1233444444446763
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.17 E-value=8.7e-10 Score=96.33 Aligned_cols=131 Identities=18% Similarity=0.184 Sum_probs=89.3
Q ss_pred CEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCC
Q 024311 37 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGD 115 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 115 (269)
++|||+|||+|.....++... ..+|++.|+++++++. .+.++... ....++.+...|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~-----a~~~~~~~-----------------gl~~~i~~~~~d 58 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEV-----GRERIRAL-----------------GLQGRIRIFYRD 58 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHH-----HHHHHHhc-----------------CCCcceEEEecc
Confidence 489999999999887776643 3589999999998843 34443221 012344554444
Q ss_pred CCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEe
Q 024311 116 WEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLT 195 (269)
Q Consensus 116 w~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlas 195 (269)
.... ...++||+|++.
T Consensus 59 ~~~~----------------------------------------------------------------~~~~~fD~I~~~ 74 (224)
T smart00828 59 SAKD----------------------------------------------------------------PFPDTYDLVFGF 74 (224)
T ss_pred cccC----------------------------------------------------------------CCCCCCCEeehH
Confidence 3211 012479999999
Q ss_pred ccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc--cc--------CcchHHHHHHhhhcCceeEEE
Q 024311 196 EIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV--GF--------NNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 196 D~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f--g~--------~~~~~~F~~~~~~~g~~~~~~ 254 (269)
.++++....+.+++.+.++|+ |+|.+++....... .. -.+..++.+.+++.||-..+.
T Consensus 75 ~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 75 EVIHHIKDKMDLFSNISRHLK-DGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred HHHHhCCCHHHHHHHHHHHcC-CCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEe
Confidence 999999999999999999999 89998886431100 00 124577888999999754443
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.17 E-value=2e-10 Score=102.93 Aligned_cols=105 Identities=27% Similarity=0.287 Sum_probs=77.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..++.++..|. +|+++|+++++++.+ +.+.... ...++++++.+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a-----~~~~~~~-----------------g~~~~v~~~~~ 100 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRA-----KQAAEAK-----------------GVSDNMQFIHC 100 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHH-----HHHHHhc-----------------CCccceEEEEc
Confidence 567999999999999998888876 899999999998543 3333211 01234555444
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|..+.+ ....++||+|++
T Consensus 101 d~~~l~--------------------------------------------------------------~~~~~~fD~V~~ 118 (255)
T PRK11036 101 AAQDIA--------------------------------------------------------------QHLETPVDLILF 118 (255)
T ss_pred CHHHHh--------------------------------------------------------------hhcCCCCCEEEe
Confidence 433211 012458999999
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
..++++......+++.+.++|+ |+|++.+.
T Consensus 119 ~~vl~~~~~~~~~l~~~~~~Lk-pgG~l~i~ 148 (255)
T PRK11036 119 HAVLEWVADPKSVLQTLWSVLR-PGGALSLM 148 (255)
T ss_pred hhHHHhhCCHHHHHHHHHHHcC-CCeEEEEE
Confidence 9999998888999999999999 89988765
No 30
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.17 E-value=9.7e-10 Score=99.16 Aligned_cols=107 Identities=25% Similarity=0.331 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++.+|||+|||+|...+.++.. +. .+|++.|++++|++.+ +.+..... . ....++++.
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A-----~~r~~~~~---~------------~~~~~i~~~ 132 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVA-----ASRQELKA---K------------SCYKNIEWI 132 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHH-----HHHhhhhh---h------------ccCCCeEEE
Confidence 5789999999999988776654 43 4899999999999553 21111000 0 011345565
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|.+..+ ..++.||+|
T Consensus 133 ~~d~~~lp---------------------------------------------------------------~~~~sfD~V 149 (261)
T PLN02233 133 EGDATDLP---------------------------------------------------------------FDDCYFDAI 149 (261)
T ss_pred EcccccCC---------------------------------------------------------------CCCCCEeEE
Confidence 55544321 134589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
+++.++.+..+...+++.+.++|+ |+|++++.
T Consensus 150 ~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~ 181 (261)
T PLN02233 150 TMGYGLRNVVDRLKAMQEMYRVLK-PGSRVSIL 181 (261)
T ss_pred EEecccccCCCHHHHHHHHHHHcC-cCcEEEEE
Confidence 999999999999999999999999 88988775
No 31
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.15 E-value=8.1e-10 Score=98.73 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=96.6
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhcc
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 92 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~ 92 (269)
--|+.|+.|... ...++|||||||+|+.||++|.. ...+|++.++++++.+++ ..|+.+|-
T Consensus 31 ~DaiLL~~~~~~--------~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A-~~nv~ln~--------- 92 (248)
T COG4123 31 TDAILLAAFAPV--------PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMA-QRNVALNP--------- 92 (248)
T ss_pred cHHHHHHhhccc--------ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHH-HHHHHhCc---------
Confidence 346777777632 23789999999999999998876 546899999999988553 45555443
Q ss_pred CCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 024311 93 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG 172 (269)
Q Consensus 93 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~g 172 (269)
+..++++++.|..+....
T Consensus 93 ------------l~~ri~v~~~Di~~~~~~-------------------------------------------------- 110 (248)
T COG4123 93 ------------LEERIQVIEADIKEFLKA-------------------------------------------------- 110 (248)
T ss_pred ------------chhceeEehhhHHHhhhc--------------------------------------------------
Confidence 234666766665543210
Q ss_pred chhhhhhcccccCCCCccEEEEeccccccC------------------CHHHHHHHHHHhcCCCCeEEEEEEcccccccC
Q 024311 173 SRAWERASEADQGEGGYDVILLTEIPYSVT------------------SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFN 234 (269)
Q Consensus 173 s~~W~~~~~~~~~~~~fDlIlasD~iY~~~------------------~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~ 234 (269)
....+||+|++.=..|... .++.+++.-.++|+ |+|.+++..+.-
T Consensus 111 -----------~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk-~~G~l~~V~r~e----- 173 (248)
T COG4123 111 -----------LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK-PGGRLAFVHRPE----- 173 (248)
T ss_pred -----------ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc-CCCEEEEEecHH-----
Confidence 1223788888854444332 25567888888998 889998887653
Q ss_pred cchHHHHHHhhhcCce
Q 024311 235 NAARHLRSLVDEEGIF 250 (269)
Q Consensus 235 ~~~~~F~~~~~~~g~~ 250 (269)
...+|++.|++.++.
T Consensus 174 -rl~ei~~~l~~~~~~ 188 (248)
T COG4123 174 -RLAEIIELLKSYNLE 188 (248)
T ss_pred -HHHHHHHHHHhcCCC
Confidence 467899999997764
No 32
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.15 E-value=2.1e-09 Score=100.55 Aligned_cols=130 Identities=15% Similarity=0.098 Sum_probs=89.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||||||+|..++.++. .+..+|+++|.++++++.+ +.|... .++++..
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A-----~~k~~~---------------------~~i~~i~ 166 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA-----KQKEPL---------------------KECKIIE 166 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHH-----HHhhhc---------------------cCCeEEe
Confidence 567999999999998877665 3446899999999988432 222210 1233433
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|.++.+ ...+.||+|+
T Consensus 167 gD~e~lp---------------------------------------------------------------~~~~sFDvVI 183 (340)
T PLN02490 167 GDAEDLP---------------------------------------------------------------FPTDYADRYV 183 (340)
T ss_pred ccHHhCC---------------------------------------------------------------CCCCceeEEE
Confidence 4433211 1345899999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcc-------cccc----cCcchHHHHHHhhhcCceeEEE
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-------NYVG----FNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~-------~~fg----~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
++.++++....+.+++.+.++|+ |+|++++.... +++. .....+++.+.+++.||-..++
T Consensus 184 s~~~L~~~~d~~~~L~e~~rvLk-PGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 184 SAGSIEYWPDPQRGIKEAYRVLK-IGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred EcChhhhCCCHHHHHHHHHHhcC-CCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 99999988888999999999999 88987765321 1110 0125688899999999865544
No 33
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.15 E-value=1.7e-09 Score=97.66 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=87.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
-++.+|||+|||+|.+...++. .+. +|++.|+++.+++.+ +.+... ..++.+.
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~-~v~giD~s~~~~~~a-----~~~~~~--------------------~~~i~~~ 104 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGA-HVHGVDICEKMVNIA-----KLRNSD--------------------KNKIEFE 104 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCC-EEEEEECCHHHHHHH-----HHHcCc--------------------CCceEEE
Confidence 3678999999999998876665 344 899999999988432 222100 1245554
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|....+ ...++||+|
T Consensus 105 ~~D~~~~~---------------------------------------------------------------~~~~~FD~V 121 (263)
T PTZ00098 105 ANDILKKD---------------------------------------------------------------FPENTFDMI 121 (263)
T ss_pred ECCcccCC---------------------------------------------------------------CCCCCeEEE
Confidence 44433211 134589999
Q ss_pred EEeccccccC--CHHHHHHHHHHhcCCCCeEEEEEEccccc---------------c-cCcchHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKNYV---------------G-FNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~k~~~f---------------g-~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
++.+++++.. ....+++.+.++|+ |+|++++..-.... + .-....++.+.+++.||-.++.
T Consensus 122 ~s~~~l~h~~~~d~~~~l~~i~r~Lk-PGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 200 (263)
T PTZ00098 122 YSRDAILHLSYADKKKLFEKCYKWLK-PNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVA 200 (263)
T ss_pred EEhhhHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeE
Confidence 9999987754 67889999999999 89998876311000 0 0124578888899999854443
No 34
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.15 E-value=7.2e-10 Score=98.77 Aligned_cols=99 Identities=25% Similarity=0.324 Sum_probs=73.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+.+|||+|||+|..+..++..+. +|+++|+++++++.+ +.+. ..+.+..+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a-----~~~~-----------------------~~~~~~~~ 92 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQA-----RQKD-----------------------AADHYLAG 92 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHH-----HhhC-----------------------CCCCEEEc
Confidence 567999999999988877777775 899999999988432 2111 01123334
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|.+..+ ....+||+|++
T Consensus 93 d~~~~~---------------------------------------------------------------~~~~~fD~V~s 109 (251)
T PRK10258 93 DIESLP---------------------------------------------------------------LATATFDLAWS 109 (251)
T ss_pred CcccCc---------------------------------------------------------------CCCCcEEEEEE
Confidence 433211 13458999999
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+.++.+......++..+.++|+ |+|.+++++
T Consensus 110 ~~~l~~~~d~~~~l~~~~~~Lk-~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQWCGNLSTALRELYRVVR-PGGVVAFTT 140 (251)
T ss_pred CchhhhcCCHHHHHHHHHHHcC-CCeEEEEEe
Confidence 9999998899999999999998 899998874
No 35
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.14 E-value=8.3e-10 Score=96.01 Aligned_cols=109 Identities=16% Similarity=0.232 Sum_probs=78.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
..+.+|||||||+|..|+.++..++.+|++.|.++++++. ++.|+..+. . .++.++.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~-----a~~Nl~~~~-----------------~-~~v~~~~ 108 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQ-----LIKNLATLK-----------------A-GNARVVN 108 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHH-----HHHHHHHhC-----------------C-CcEEEEE
Confidence 3578999999999999997666677799999999998843 445554331 1 1455555
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|+... + . ....+||+|+
T Consensus 109 ~D~~~~--------------------------------------------------l----------~--~~~~~fDlV~ 126 (199)
T PRK10909 109 TNALSF--------------------------------------------------L----------A--QPGTPHNVVF 126 (199)
T ss_pred chHHHH--------------------------------------------------H----------h--hcCCCceEEE
Confidence 553221 0 0 0123699998
Q ss_pred EeccccccCCHHHHHHHHHHh--cCCCCeEEEEEEccc
Q 024311 194 LTEIPYSVTSLKKLYLLIKKC--LRPPYGVVYLATKKN 229 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~--L~~p~g~~~va~k~~ 229 (269)
. |..|.....+.+++.|... |. |++++||.+.+.
T Consensus 127 ~-DPPy~~g~~~~~l~~l~~~~~l~-~~~iv~ve~~~~ 162 (199)
T PRK10909 127 V-DPPFRKGLLEETINLLEDNGWLA-DEALIYVESEVE 162 (199)
T ss_pred E-CCCCCCChHHHHHHHHHHCCCcC-CCcEEEEEecCC
Confidence 7 9999998898999988873 66 899999987653
No 36
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.13 E-value=2.6e-09 Score=93.71 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=74.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.+.+|||+|||+|..+..++.. + ..+|++.|+++.+++. .+.|.... ..+++++.
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~------------------~~~~v~~~ 101 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSV-----GRQKVKDA------------------GLHNVELV 101 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHH-----HHHHHHhc------------------CCCceEEE
Confidence 5789999999999998877653 3 3489999999998844 33333211 01244554
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|....+ ...++||+|
T Consensus 102 ~~d~~~~~---------------------------------------------------------------~~~~~fD~V 118 (231)
T TIGR02752 102 HGNAMELP---------------------------------------------------------------FDDNSFDYV 118 (231)
T ss_pred EechhcCC---------------------------------------------------------------CCCCCccEE
Confidence 44433211 124589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
+++.++.+.+....+++.+.++|+ |+|++++.
T Consensus 119 ~~~~~l~~~~~~~~~l~~~~~~Lk-~gG~l~~~ 150 (231)
T TIGR02752 119 TIGFGLRNVPDYMQVLREMYRVVK-PGGKVVCL 150 (231)
T ss_pred EEecccccCCCHHHHHHHHHHHcC-cCeEEEEE
Confidence 999998888888999999999998 89988765
No 37
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.13 E-value=8.1e-10 Score=95.37 Aligned_cols=38 Identities=26% Similarity=0.456 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|..++.++..|. +|++.|+++.+++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~ 67 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIAS 67 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 567999999999999999998886 89999999998854
No 38
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.13 E-value=3.4e-09 Score=102.96 Aligned_cols=130 Identities=21% Similarity=0.262 Sum_probs=91.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..++.++.....+|++.|++++++..+ +.|... ...++.|..+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A-----~~~~~~-------------------~~~~v~~~~~ 321 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFA-----LERAIG-------------------RKCSVEFEVA 321 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHH-----HHHhhc-------------------CCCceEEEEc
Confidence 5779999999999988777654333899999999988543 223210 1134566666
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|+...+ ...++||+|++
T Consensus 322 d~~~~~---------------------------------------------------------------~~~~~fD~I~s 338 (475)
T PLN02336 322 DCTKKT---------------------------------------------------------------YPDNSFDVIYS 338 (475)
T ss_pred CcccCC---------------------------------------------------------------CCCCCEEEEEE
Confidence 654321 12358999999
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccc-----------c---c-cCcchHHHHHHhhhcCceeE
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-----------V---G-FNNAARHLRSLVDEEGIFGA 252 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~-----------f---g-~~~~~~~F~~~~~~~g~~~~ 252 (269)
.+++++....+.+++.+.++|+ |+|.+++...... + | .-.....+.+.+++.||-..
T Consensus 339 ~~~l~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i 410 (475)
T PLN02336 339 RDTILHIQDKPALFRSFFKWLK-PGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDV 410 (475)
T ss_pred CCcccccCCHHHHHHHHHHHcC-CCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeee
Confidence 9999999999999999999999 8999888732110 0 0 01245677888888997544
No 39
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.12 E-value=3.3e-09 Score=90.60 Aligned_cols=119 Identities=17% Similarity=0.171 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
++.+|||+|||+|..++.+++.++ .+|++.|.++++++. ++.|...+. . .++++..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~-----a~~n~~~~~-----------------~-~~i~~~~ 87 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRL-----IKENRQRFG-----------------C-GNIDIIP 87 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHH-----HHHHHHHhC-----------------C-CCeEEEe
Confidence 678999999999999998887543 589999999998843 445553320 0 1344433
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|... ....+||+|+
T Consensus 88 ~d~~~-----------------------------------------------------------------~~~~~~D~v~ 102 (187)
T PRK08287 88 GEAPI-----------------------------------------------------------------ELPGKADAIF 102 (187)
T ss_pred cCchh-----------------------------------------------------------------hcCcCCCEEE
Confidence 33110 0124799999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCce
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~ 250 (269)
.+-.. ..++.+++.+.++|+ |+|++++.... .+...++...+++.|+.
T Consensus 103 ~~~~~---~~~~~~l~~~~~~Lk-~gG~lv~~~~~-----~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 103 IGGSG---GNLTAIIDWSLAHLH-PGGRLVLTFIL-----LENLHSALAHLEKCGVS 150 (187)
T ss_pred ECCCc---cCHHHHHHHHHHhcC-CCeEEEEEEec-----HhhHHHHHHHHHHCCCC
Confidence 86432 346778888889998 89998775422 13567888999999974
No 40
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.12 E-value=2.6e-09 Score=93.27 Aligned_cols=105 Identities=26% Similarity=0.344 Sum_probs=76.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC--CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga--~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.+.+|||+|||+|..++.++..+. .+|+++|+++.+++ ..+.|...+ ....++.+.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~-----~a~~~~~~~-----------------~~~~~~~~~ 108 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLA-----VGREKLRDL-----------------GLSGNVEFV 108 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHH-----HHHHhhccc-----------------ccccCeEEE
Confidence 578999999999999988777663 69999999998884 344443211 011234444
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|....+ ...+.||+|
T Consensus 109 ~~d~~~~~---------------------------------------------------------------~~~~~~D~I 125 (239)
T PRK00216 109 QGDAEALP---------------------------------------------------------------FPDNSFDAV 125 (239)
T ss_pred ecccccCC---------------------------------------------------------------CCCCCccEE
Confidence 44433211 123589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
+.+-++.+....+.+++.+.++|+ |+|++++.
T Consensus 126 ~~~~~l~~~~~~~~~l~~~~~~L~-~gG~li~~ 157 (239)
T PRK00216 126 TIAFGLRNVPDIDKALREMYRVLK-PGGRLVIL 157 (239)
T ss_pred EEecccccCCCHHHHHHHHHHhcc-CCcEEEEE
Confidence 999999999999999999999998 88887765
No 41
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.12 E-value=3.5e-10 Score=92.66 Aligned_cols=64 Identities=16% Similarity=0.373 Sum_probs=50.0
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccc-----------cccC--c-----chHHHHHHhhh
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-----------VGFN--N-----AARHLRSLVDE 246 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~-----------fg~~--~-----~~~~F~~~~~~ 246 (269)
..++||+|++++++++......+++.|.++|+ |+|.+++....++ +... + +..++..++++
T Consensus 75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 153 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLK-PGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQ 153 (161)
T ss_dssp HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEE-EEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHH
T ss_pred cccchhhHhhHHHHhhcccHHHHHHHHHHhcC-CCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHH
Confidence 34699999999999999999999999999999 8999999865432 1110 0 34677777888
Q ss_pred cCc
Q 024311 247 EGI 249 (269)
Q Consensus 247 ~g~ 249 (269)
.|+
T Consensus 154 ~G~ 156 (161)
T PF13489_consen 154 AGF 156 (161)
T ss_dssp TTE
T ss_pred CCC
Confidence 886
No 42
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.10 E-value=8e-10 Score=100.88 Aligned_cols=39 Identities=23% Similarity=0.512 Sum_probs=34.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.++.+|||+|||+|..++.++..|. +|++.|+++.+++.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~ 157 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLEN 157 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 3566999999999999999998886 89999999999843
No 43
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.09 E-value=4.9e-09 Score=91.40 Aligned_cols=126 Identities=24% Similarity=0.348 Sum_probs=85.8
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccC
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ 93 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~ 93 (269)
.......+|+.+.........++.+|||+|||+|..+..++..++ +|+++|.++.++. ..+.|+..+.
T Consensus 24 ~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~-----~a~~~~~~~~------ 91 (224)
T TIGR01983 24 KMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIE-----VAKLHAKKDP------ 91 (224)
T ss_pred HhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHH-----HHHHHHHHcC------
Confidence 333444567766553222235688999999999999888887776 6999999999873 3444443210
Q ss_pred CCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 024311 94 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS 173 (269)
Q Consensus 94 ~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs 173 (269)
. .++++...|..+.+
T Consensus 92 -----------~-~~~~~~~~d~~~~~----------------------------------------------------- 106 (224)
T TIGR01983 92 -----------L-LKIEYRCTSVEDLA----------------------------------------------------- 106 (224)
T ss_pred -----------C-CceEEEeCCHHHhh-----------------------------------------------------
Confidence 0 02333333322110
Q ss_pred hhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 174 RAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 174 ~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
. ....+||+|+++.++++......+++.+.++|+ ++|.++++.
T Consensus 107 -------~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~i~~ 149 (224)
T TIGR01983 107 -------E--KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLK-PGGILFFST 149 (224)
T ss_pred -------c--CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcC-CCcEEEEEe
Confidence 0 123589999999999999999999999999998 889888765
No 44
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.08 E-value=2.2e-09 Score=95.88 Aligned_cols=100 Identities=21% Similarity=0.286 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.++.+|||+|||+|.....++.. +..+|+++|+++.+++.+ +.+. +++.+.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a-----~~~~-----------------------~~~~~~ 81 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEA-----RSRL-----------------------PDCQFV 81 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHH-----HHhC-----------------------CCCeEE
Confidence 36789999999999998776654 345899999999988432 2221 123333
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|-.. | ....+||+|
T Consensus 82 ~~d~~~---------------------------------------------------------~-------~~~~~fD~v 97 (258)
T PRK01683 82 EADIAS---------------------------------------------------------W-------QPPQALDLI 97 (258)
T ss_pred ECchhc---------------------------------------------------------c-------CCCCCccEE
Confidence 332111 1 022489999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+++.++++......+++.+.++|+ |+|.+.+..
T Consensus 98 ~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~~~~~~ 130 (258)
T PRK01683 98 FANASLQWLPDHLELFPRLVSLLA-PGGVLAVQM 130 (258)
T ss_pred EEccChhhCCCHHHHHHHHHHhcC-CCcEEEEEC
Confidence 999999988889999999999999 899888753
No 45
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.07 E-value=2.5e-09 Score=102.06 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCC-Ceeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLA-PSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 112 (269)
.+|++|||||||||..++.++..|+.+|++.|.++.+++. .+.|+..|. +. .+++++
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~-----a~~N~~~Ng-----------------l~~~~v~~i 276 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDI-----ARQNVELNK-----------------LDLSKAEFV 276 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHH-----HHHHHHHcC-----------------CCCCcEEEE
Confidence 3689999999999999998888888899999999999954 344544431 11 246666
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.. .. + .....+||+|
T Consensus 277 ~~D~~~~l---~~--------------------------------------------------~------~~~~~~fDlV 297 (396)
T PRK15128 277 RDDVFKLL---RT--------------------------------------------------Y------RDRGEKFDVI 297 (396)
T ss_pred EccHHHHH---HH--------------------------------------------------H------HhcCCCCCEE
Confidence 66643210 00 0 0123579999
Q ss_pred EEeccccccCC----------HHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhh
Q 024311 193 LLTEIPYSVTS----------LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDE 246 (269)
Q Consensus 193 lasD~iY~~~~----------~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~ 246 (269)
|. |..|.... +..++....++|+ |+|.++.++..... +.++|.+.+.+
T Consensus 298 il-DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~scs~~~----~~~~f~~~v~~ 355 (396)
T PRK15128 298 VM-DPPKFVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFSCSGLM----TSDLFQKIIAD 355 (396)
T ss_pred EE-CCCCCCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCCcC----CHHHHHHHHHH
Confidence 96 88886654 3444555567888 89999988776654 46778877764
No 46
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.07 E-value=6.2e-09 Score=98.68 Aligned_cols=46 Identities=28% Similarity=0.407 Sum_probs=35.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
+.+|||||||+|..|+.++..+ ..+|+++|.++.+++.+ ..|+..|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A-~~N~~~n 275 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASS-RLNVETN 275 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHH-HHHHHHc
Confidence 4599999999999999988765 35899999999998543 3444433
No 47
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.06 E-value=7.1e-09 Score=94.85 Aligned_cols=139 Identities=22% Similarity=0.287 Sum_probs=96.4
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.++|++|||+|||.|.-+.-++..||+.|+++|.++..+.+ -.+...+.. ....+.++
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~Q---F~~i~~~lg-------------------~~~~~~~l 170 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQ---FEAIKHFLG-------------------QDPPVFEL 170 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHH---HHHHHHHhC-------------------CCccEEEc
Confidence 67999999999999999999999999999999987754422 112111110 01112221
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+-.++ ++ ..+.||+|
T Consensus 171 plgvE~---------------------------------------------------Lp-------------~~~~FDtV 186 (315)
T PF08003_consen 171 PLGVED---------------------------------------------------LP-------------NLGAFDTV 186 (315)
T ss_pred Ccchhh---------------------------------------------------cc-------------ccCCcCEE
Confidence 111111 11 24589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE-------------cccccccC-----cchHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT-------------KKNYVGFN-----NAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~-------------k~~~fg~~-----~~~~~F~~~~~~~g~~~~~~ 254 (269)
++-=|+|+..+.-..+..++..|+ ++|.+++-+ +.+|=... .+.......++..||-.+++
T Consensus 187 F~MGVLYHrr~Pl~~L~~Lk~~L~-~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~ 265 (315)
T PF08003_consen 187 FSMGVLYHRRSPLDHLKQLKDSLR-PGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRC 265 (315)
T ss_pred EEeeehhccCCHHHHHHHHHHhhC-CCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEE
Confidence 999999999999999999999998 777666432 22332222 37788899999999988888
Q ss_pred Eeee
Q 024311 255 IKEM 258 (269)
Q Consensus 255 ~~~~ 258 (269)
+...
T Consensus 266 v~~~ 269 (315)
T PF08003_consen 266 VDVS 269 (315)
T ss_pred ecCc
Confidence 7644
No 48
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.06 E-value=2.9e-09 Score=92.77 Aligned_cols=102 Identities=24% Similarity=0.342 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.++++|||||||+|..+..++..++ .+|+++|.++++++.+ ..+. .+++.+.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~-----~~~~----------------------~~~~~~~ 85 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQA-----KTKL----------------------SENVQFI 85 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHH-----HHhc----------------------CCCCeEE
Confidence 4568999999999998877776654 4689999999887432 1111 0133444
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|....+ ...++||+|
T Consensus 86 ~~d~~~~~---------------------------------------------------------------~~~~~fD~v 102 (240)
T TIGR02072 86 CGDAEKLP---------------------------------------------------------------LEDSSFDLI 102 (240)
T ss_pred ecchhhCC---------------------------------------------------------------CCCCceeEE
Confidence 34433211 123589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+++.++++......++..+.++|+ |+|.++++.
T Consensus 103 i~~~~l~~~~~~~~~l~~~~~~L~-~~G~l~~~~ 135 (240)
T TIGR02072 103 VSNLALQWCDDLSQALSELARVLK-PGGLLAFST 135 (240)
T ss_pred EEhhhhhhccCHHHHHHHHHHHcC-CCcEEEEEe
Confidence 999999999899999999999999 899988864
No 49
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.05 E-value=2.9e-09 Score=92.45 Aligned_cols=126 Identities=20% Similarity=0.145 Sum_probs=84.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||+|||+|...+.++.. +..+|++.|+++++++. ++.|...+. . +++.++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~-----a~~~~~~~~-----------------~-~~v~~~~ 96 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGK-----ALKKIEEEG-----------------L-TNLRLLC 96 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHH-----HHHHHHHcC-----------------C-CCEEEEe
Confidence 5679999999999998776654 33589999999999844 344443220 1 3466666
Q ss_pred CCC-CCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 114 GDW-EELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 114 ~dw-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
+|+ +..+. ......||+|
T Consensus 97 ~d~~~~l~~-------------------------------------------------------------~~~~~~~D~V 115 (202)
T PRK00121 97 GDAVEVLLD-------------------------------------------------------------MFPDGSLDRI 115 (202)
T ss_pred cCHHHHHHH-------------------------------------------------------------HcCccccceE
Confidence 665 32110 0124579999
Q ss_pred EEeccccccC--------CHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCce
Q 024311 193 LLTEIPYSVT--------SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 193 lasD~iY~~~--------~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~ 250 (269)
+..-...... ..+.+++.+.++|+ |+|++++++.... -....++.+++.|+.
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~~~~~~-----~~~~~~~~~~~~g~~ 175 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLK-PGGEIHFATDWEG-----YAEYMLEVLSAEGGF 175 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcC-CCCEEEEEcCCHH-----HHHHHHHHHHhCccc
Confidence 8753321111 25778999999999 8999998865432 356788888898863
No 50
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.05 E-value=7.5e-10 Score=86.67 Aligned_cols=106 Identities=29% Similarity=0.455 Sum_probs=73.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCC
Q 024311 36 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGD 115 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 115 (269)
|.+|||+|||+|...+.++..++.++++.|+++..++. .+.|+..+. ...+++++.+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~-----a~~~~~~~~-----------------~~~~~~~~~~D 58 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVEL-----ARRNLPRNG-----------------LDDRVEVIVGD 58 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHH-----HHHHCHHCT-----------------TTTTEEEEESH
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHH-----HHHHHHHcc-----------------CCceEEEEECc
Confidence 56999999999999999998886699999999998844 344443321 22346666665
Q ss_pred CCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEe
Q 024311 116 WEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLT 195 (269)
Q Consensus 116 w~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlas 195 (269)
+.+... .....+||+|++
T Consensus 59 ~~~~~~-------------------------------------------------------------~~~~~~~D~Iv~- 76 (117)
T PF13659_consen 59 ARDLPE-------------------------------------------------------------PLPDGKFDLIVT- 76 (117)
T ss_dssp HHHHHH-------------------------------------------------------------TCTTT-EEEEEE-
T ss_pred hhhchh-------------------------------------------------------------hccCceeEEEEE-
Confidence 433210 024568999998
Q ss_pred ccccccC---------CHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 196 EIPYSVT---------SLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 196 D~iY~~~---------~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+..|... .+..+++.+.++|+ |+|++++.+
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~-~gG~~~~~~ 115 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLK-PGGVLVFIT 115 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcC-CCeEEEEEe
Confidence 6666643 35678888889998 889888764
No 51
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.03 E-value=2.5e-09 Score=95.18 Aligned_cols=104 Identities=22% Similarity=0.337 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
+|.+|||+|||||..++.++.. +. .+|++.|++++||+.. +...... ...+|++.
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a-----~~k~~~~------------------~~~~i~~v 103 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVA-----RKKLKRE------------------GLQNIEFV 103 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHH-----HHHHHHT------------------T--SEEEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHH-----HHHHHhh------------------CCCCeeEE
Confidence 5779999999999999877653 32 4899999999999543 2222110 01257777
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|-+++| ..+++||.|
T Consensus 104 ~~da~~lp---------------------------------------------------------------~~d~sfD~v 120 (233)
T PF01209_consen 104 QGDAEDLP---------------------------------------------------------------FPDNSFDAV 120 (233)
T ss_dssp E-BTTB-----------------------------------------------------------------S-TT-EEEE
T ss_pred EcCHHHhc---------------------------------------------------------------CCCCceeEE
Confidence 66655543 245699999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
..+=.+.+..+.+..++.+.++|+ |+|++.|.
T Consensus 121 ~~~fglrn~~d~~~~l~E~~RVLk-PGG~l~il 152 (233)
T PF01209_consen 121 TCSFGLRNFPDRERALREMYRVLK-PGGRLVIL 152 (233)
T ss_dssp EEES-GGG-SSHHHHHHHHHHHEE-EEEEEEEE
T ss_pred EHHhhHHhhCCHHHHHHHHHHHcC-CCeEEEEe
Confidence 999999999999999999999999 88887664
No 52
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.03 E-value=1.9e-09 Score=96.52 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=34.7
Q ss_pred CCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 187 GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 187 ~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
.+||+|+++.++++....+.+++.+.+.|+ |+|.+++.
T Consensus 88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~ 125 (255)
T PRK14103 88 PDTDVVVSNAALQWVPEHADLLVRWVDELA-PGSWIAVQ 125 (255)
T ss_pred CCceEEEEehhhhhCCCHHHHHHHHHHhCC-CCcEEEEE
Confidence 489999999999999899999999999999 89988875
No 53
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.02 E-value=2.4e-08 Score=88.30 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=42.9
Q ss_pred eeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 12 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 12 vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
-++.+..+.+.+.+... -.+++|||+|||+|..++.++.. +..+|+++|.++.+++.
T Consensus 69 p~~~~~~l~~~~l~~~~-----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~ 126 (251)
T TIGR03534 69 PRPDTEELVEAALERLK-----KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAV 126 (251)
T ss_pred CCCChHHHHHHHHHhcc-----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 34566677777666531 24569999999999999888765 33489999999999844
No 54
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.02 E-value=2.6e-09 Score=95.23 Aligned_cols=104 Identities=25% Similarity=0.424 Sum_probs=80.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
+|.+|||+|||||-..+.++. .|..+|++.|+++.||+..... . ... .. .+++|..
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k-----~-------~~~----------~~-~~i~fv~ 107 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREK-----L-------KKK----------GV-QNVEFVV 107 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHH-----h-------hcc----------Cc-cceEEEE
Confidence 689999999999999987665 4456999999999998432111 0 000 01 1277777
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|-+++| ..+.+||+|.
T Consensus 108 ~dAe~LP---------------------------------------------------------------f~D~sFD~vt 124 (238)
T COG2226 108 GDAENLP---------------------------------------------------------------FPDNSFDAVT 124 (238)
T ss_pred echhhCC---------------------------------------------------------------CCCCccCEEE
Confidence 7766654 2567999999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
.+=.+-+..+.+..++.+.|.|+ |+|++++.
T Consensus 125 ~~fglrnv~d~~~aL~E~~RVlK-pgG~~~vl 155 (238)
T COG2226 125 ISFGLRNVTDIDKALKEMYRVLK-PGGRLLVL 155 (238)
T ss_pred eeehhhcCCCHHHHHHHHHHhhc-CCeEEEEE
Confidence 99999999999999999999999 89987775
No 55
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.01 E-value=6.2e-09 Score=89.73 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=41.7
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
.+.|++||||+||+|..|+.|+..|+++|++.|.++..+ ..++.|+..+
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~-----~~~~~N~~~~ 95 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKAN-----QTLKENLALL 95 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHH-----HHHHHHHHHh
Confidence 357899999999999999999999999999999999988 4455565443
No 56
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.01 E-value=2.1e-08 Score=93.04 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=35.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.++.+|||+|||+|..++.++..|. +|++.|+++.+++.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~ 181 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAE 181 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 4678999999999999999998876 89999999999954
No 57
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.00 E-value=1.7e-08 Score=87.20 Aligned_cols=128 Identities=18% Similarity=0.239 Sum_probs=84.3
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 110 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (269)
..++.+|||+|||+|..++.+++. + ..+|++.|.++++++ ..+.|+..+. +..++.
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~-----~a~~n~~~~g-----------------~~~~v~ 95 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAIN-----LTRRNAEKFG-----------------VLNNIV 95 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHH-----HHHHHHHHhC-----------------CCCCeE
Confidence 347889999999999999988764 3 358999999999884 3455553321 112344
Q ss_pred eecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 024311 111 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 190 (269)
Q Consensus 111 ~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fD 190 (269)
+..+|..+.. .....+||
T Consensus 96 ~~~~d~~~~l--------------------------------------------------------------~~~~~~~D 113 (198)
T PRK00377 96 LIKGEAPEIL--------------------------------------------------------------FTINEKFD 113 (198)
T ss_pred EEEechhhhH--------------------------------------------------------------hhcCCCCC
Confidence 4444322100 01234799
Q ss_pred EEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEE
Q 024311 191 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 191 lIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
.|+..- ....+..+++.+.++|+ |+|++++..... +...+-...+++.|+ ..++
T Consensus 114 ~V~~~~---~~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~-----~~~~~~~~~l~~~g~-~~~~ 167 (198)
T PRK00377 114 RIFIGG---GSEKLKEIISASWEIIK-KGGRIVIDAILL-----ETVNNALSALENIGF-NLEI 167 (198)
T ss_pred EEEECC---CcccHHHHHHHHHHHcC-CCcEEEEEeecH-----HHHHHHHHHHHHcCC-CeEE
Confidence 999732 23456778888888998 889887754432 246778888888897 5554
No 58
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.00 E-value=5.2e-09 Score=106.55 Aligned_cols=133 Identities=23% Similarity=0.291 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCC-Ceeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLA-PSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 112 (269)
.+|++|||||||||..++.++..|+++|+..|+++.+++. .+.|+..|. +. .+++++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~-----a~~N~~~ng-----------------~~~~~v~~i 594 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEW-----AERNFALNG-----------------LSGRQHRLI 594 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH-----HHHHHHHhC-----------------CCccceEEE
Confidence 3689999999999999999999999889999999999954 445554431 11 245665
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+ |-. ....+||+|
T Consensus 595 ~~D~~~---------------------------------------------------------~l~-----~~~~~fDlI 612 (702)
T PRK11783 595 QADCLA---------------------------------------------------------WLK-----EAREQFDLI 612 (702)
T ss_pred EccHHH---------------------------------------------------------HHH-----HcCCCcCEE
Confidence 555321 100 013479999
Q ss_pred EEecccccc------------CCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEEEeeec
Q 024311 193 LLTEIPYSV------------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMT 259 (269)
Q Consensus 193 lasD~iY~~------------~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~~~~~~ 259 (269)
|. |..|.. ..+..++..+.++|+ |+|++++++..+.+. .-...+++.|+ ..+++....
T Consensus 613 il-DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~-~gG~l~~~~~~~~~~------~~~~~~~~~g~-~~~~i~~~~ 682 (702)
T PRK11783 613 FI-DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLR-PGGTLYFSNNKRGFK------MDEEGLAKLGL-KAEEITAKT 682 (702)
T ss_pred EE-CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcC-CCCEEEEEeCCccCC------hhHHHHHhCCC-eEEEEecCC
Confidence 98 666643 235667888888898 899999887665442 22666777785 566655443
No 59
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.99 E-value=2.5e-08 Score=89.65 Aligned_cols=56 Identities=23% Similarity=0.308 Sum_probs=39.5
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
.+..|++.+..... ....+.+|||||||+|..++.++.. +..+|+++|+++.+++.
T Consensus 69 ~Te~Lv~~~l~~~~---~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~ 125 (251)
T TIGR03704 69 RTEFLVDEAAALAR---PRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRC 125 (251)
T ss_pred cHHHHHHHHHHhhc---ccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 34566666654321 1113458999999999999887754 33589999999999843
No 60
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.99 E-value=2.9e-08 Score=94.92 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
+..|++.+.... .++.+|||||||+|..++.++.. +..+|+++|+++++++.
T Consensus 238 TE~LVe~aL~~l------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~ 290 (423)
T PRK14966 238 TEHLVEAVLARL------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET 290 (423)
T ss_pred HHHHHHHhhhcc------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 346666665542 14569999999999999887753 45689999999999944
No 61
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.97 E-value=3.4e-08 Score=85.31 Aligned_cols=103 Identities=24% Similarity=0.367 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC--CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga--~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++.+|||+|||+|..+..++..++ .++++.|.++.++ ++.+.|... ..++++.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~-----~~~~~~~~~--------------------~~~i~~~ 93 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEML-----EVAKKKSEL--------------------PLNIEFI 93 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHH-----HHHHHHhcc--------------------CCCceEE
Confidence 688999999999999887776655 4899999999888 334433310 1234444
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.+ ...++||+|
T Consensus 94 ~~d~~~~~---------------------------------------------------------------~~~~~~D~i 110 (223)
T TIGR01934 94 QADAEALP---------------------------------------------------------------FEDNSFDAV 110 (223)
T ss_pred ecchhcCC---------------------------------------------------------------CCCCcEEEE
Confidence 33332210 123589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+.+..+.+......+++.+.++|+ |+|++++..
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~ 143 (223)
T TIGR01934 111 TIAFGLRNVTDIQKALREMYRVLK-PGGRLVILE 143 (223)
T ss_pred EEeeeeCCcccHHHHHHHHHHHcC-CCcEEEEEE
Confidence 999999888899999999999998 889887753
No 62
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=2.3e-08 Score=85.66 Aligned_cols=60 Identities=32% Similarity=0.347 Sum_probs=46.9
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 19 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 19 La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
+|.++..... ....+.|++|+|||||||.+|+.++.+||++|++.|.+++.++. .+.|..
T Consensus 30 ~Aa~il~~a~-~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei-----~r~N~~ 89 (198)
T COG2263 30 LAAYILWVAY-LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEI-----ARANAE 89 (198)
T ss_pred HHHHHHHHHH-HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHH-----HHHHHH
Confidence 4444443332 13467999999999999999999999999999999999999944 455553
No 63
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.96 E-value=4.4e-08 Score=76.74 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
++.+|||+|||+|..++.++.. +..+|+++|+++.+++.
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~ 58 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRL 58 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHH
Confidence 5679999999999999887765 34689999999998843
No 64
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.96 E-value=8.3e-08 Score=86.26 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=39.9
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHH
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 73 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~ 73 (269)
+..|++.+.... ...++.+|||+|||+|..++.++... ..+|+++|.++.+++.
T Consensus 93 te~l~~~~~~~~----~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~ 147 (275)
T PRK09328 93 TEELVEWALEAL----LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAV 147 (275)
T ss_pred cHHHHHHHHHhc----cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 445666665332 12357799999999999998887654 4589999999998843
No 65
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.96 E-value=2.9e-08 Score=93.05 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~ 73 (269)
..+|||||||+|..++.++..++ .+|+++|.++.+++.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~ 235 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALES 235 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 34899999999999998887654 589999999999844
No 66
>PRK08317 hypothetical protein; Provisional
Probab=98.95 E-value=2.7e-08 Score=86.44 Aligned_cols=105 Identities=26% Similarity=0.354 Sum_probs=74.5
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcC--CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~g--a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
..+.+|||+|||+|.....++... ..+|+++|.++.+++.+ +.+... ...++.+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a-----~~~~~~-------------------~~~~~~~ 73 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA-----KERAAG-------------------LGPNVEF 73 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHH-----HHHhhC-------------------CCCceEE
Confidence 367899999999999887766542 35899999999887432 222110 1123444
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
...|....+ ....+||+
T Consensus 74 ~~~d~~~~~---------------------------------------------------------------~~~~~~D~ 90 (241)
T PRK08317 74 VRGDADGLP---------------------------------------------------------------FPDGSFDA 90 (241)
T ss_pred EecccccCC---------------------------------------------------------------CCCCCceE
Confidence 444332211 12458999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
|++..++.+......+++.+.++|+ |+|.+++..
T Consensus 91 v~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~ 124 (241)
T PRK08317 91 VRSDRVLQHLEDPARALAEIARVLR-PGGRVVVLD 124 (241)
T ss_pred EEEechhhccCCHHHHHHHHHHHhc-CCcEEEEEe
Confidence 9999999998899999999999999 888887654
No 67
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.95 E-value=1e-08 Score=93.30 Aligned_cols=114 Identities=25% Similarity=0.376 Sum_probs=73.8
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCC
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE 95 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~ 95 (269)
....+++.+.. ..-.|.+|||||||-|-+++.++.. |+ +|++...+++..+. ++..+...
T Consensus 48 ~~k~~~~~~~~----~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~-----a~~~~~~~--------- 108 (273)
T PF02353_consen 48 ERKLDLLCEKL----GLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEY-----ARERIREA--------- 108 (273)
T ss_dssp HHHHHHHHTTT----T--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHH-----HHHHHHCS---------
T ss_pred HHHHHHHHHHh----CCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHH-----HHHHHHhc---------
Confidence 34444555543 2447889999999999999998876 87 89999999987743 22222110
Q ss_pred CCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchh
Q 024311 96 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRA 175 (269)
Q Consensus 96 ~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~ 175 (269)
.+...+++...|+.+
T Consensus 109 --------gl~~~v~v~~~D~~~--------------------------------------------------------- 123 (273)
T PF02353_consen 109 --------GLEDRVEVRLQDYRD--------------------------------------------------------- 123 (273)
T ss_dssp --------TSSSTEEEEES-GGG---------------------------------------------------------
T ss_pred --------CCCCceEEEEeeccc---------------------------------------------------------
Confidence 122344544444332
Q ss_pred hhhhcccccCCCCccEEEEecccccc--CCHHHHHHHHHHhcCCCCeEEEE
Q 024311 176 WERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYL 224 (269)
Q Consensus 176 W~~~~~~~~~~~~fDlIlasD~iY~~--~~~~~L~~~l~~~L~~p~g~~~v 224 (269)
.+.+||-|++-+++-+. ..++.+++.+.++|+ |+|++++
T Consensus 124 ---------~~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk-pgG~~~l 164 (273)
T PF02353_consen 124 ---------LPGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK-PGGRLVL 164 (273)
T ss_dssp ------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE-TTEEEEE
T ss_pred ---------cCCCCCEEEEEechhhcChhHHHHHHHHHHHhcC-CCcEEEE
Confidence 12399999999999987 678999999999998 8999875
No 68
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.93 E-value=1.3e-08 Score=89.04 Aligned_cols=40 Identities=38% Similarity=0.641 Sum_probs=34.8
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
..++.+|||+|||+|..+..++..++ +|+++|++++++..
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~ 92 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQM 92 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 34688999999999999988887776 89999999999844
No 69
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.93 E-value=3.7e-08 Score=85.86 Aligned_cols=39 Identities=10% Similarity=-0.002 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
++.+|||+|||+|.....++.. +..+|++.|+++++++.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~ 82 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEK 82 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 5779999999999998877664 44589999999999854
No 70
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.91 E-value=2e-08 Score=86.75 Aligned_cols=120 Identities=22% Similarity=0.348 Sum_probs=72.8
Q ss_pred CEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCCC
Q 024311 37 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDW 116 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw 116 (269)
.++||+|||.|.+...+|... .+++++|.++..++.+ +..+ . -.++|++...|.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~A-----r~Rl-------~-------------~~~~V~~~~~dv 98 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARA-----RERL-------A-------------GLPHVEWIQADV 98 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHH-----HHHT-------T-------------T-SSEEEEES-T
T ss_pred ceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHH-----HHhc-------C-------------CCCCeEEEECcC
Confidence 489999999999997777664 4899999999888442 1111 0 114566554442
Q ss_pred CCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEec
Q 024311 117 EELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTE 196 (269)
Q Consensus 117 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD 196 (269)
... ...++||+|+.|+
T Consensus 99 p~~----------------------------------------------------------------~P~~~FDLIV~SE 114 (201)
T PF05401_consen 99 PEF----------------------------------------------------------------WPEGRFDLIVLSE 114 (201)
T ss_dssp TT-------------------------------------------------------------------SS-EEEEEEES
T ss_pred CCC----------------------------------------------------------------CCCCCeeEEEEeh
Confidence 110 2456999999999
Q ss_pred cccccCCHHHH---HHHHHHhcCCCCeEEEEEEccc----ccccCcchHHHHHHhhhc
Q 024311 197 IPYSVTSLKKL---YLLIKKCLRPPYGVVYLATKKN----YVGFNNAARHLRSLVDEE 247 (269)
Q Consensus 197 ~iY~~~~~~~L---~~~l~~~L~~p~g~~~va~k~~----~fg~~~~~~~F~~~~~~~ 247 (269)
++|.....+.| ++.+...|+ |+|.+++++-+. ..|-.-|.+.-.+.+.+.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~-pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALA-PGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH 171 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH
T ss_pred HhHcCCCHHHHHHHHHHHHHHhC-CCCEEEEEEecCCcccccCcccchHHHHHHHHHH
Confidence 99999876654 455555677 999999986542 233333566666666654
No 71
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.91 E-value=3.4e-10 Score=86.45 Aligned_cols=35 Identities=14% Similarity=0.411 Sum_probs=24.3
Q ss_pred CCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEE
Q 024311 187 GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVV 222 (269)
Q Consensus 187 ~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~ 222 (269)
++||+|+++.++++.+..+.+++.+.++|+ |+|++
T Consensus 65 ~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~-pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHLEDIEAVLRNIYRLLK-PGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS--S-HHHHHHHHTTT-T-SS-EE
T ss_pred cccceehhhhhHhhhhhHHHHHHHHHHHcC-CCCCC
Confidence 599999999999999999999999999999 88874
No 72
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.90 E-value=3.5e-09 Score=90.96 Aligned_cols=112 Identities=27% Similarity=0.420 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
+.|.+||||-||+|.+|+.|...||++|++.|.++..+ ..++.|+.... ...+++.+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~-----~~i~~N~~~l~-----------------~~~~~~v~~ 98 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAI-----KIIKKNLEKLG-----------------LEDKIRVIK 98 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHH-----HHHHHHHHHHT------------------GGGEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHH-----HHHHHHHHHhC-----------------CCcceeeec
Confidence 68999999999999999999999999999999999988 66777776431 111233322
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
.|.... +.+. .....+||+|+
T Consensus 99 ~d~~~~--------------------------------------------------------l~~~---~~~~~~fDiIf 119 (183)
T PF03602_consen 99 GDAFKF--------------------------------------------------------LLKL---AKKGEKFDIIF 119 (183)
T ss_dssp SSHHHH--------------------------------------------------------HHHH---HHCTS-EEEEE
T ss_pred cCHHHH--------------------------------------------------------HHhh---cccCCCceEEE
Confidence 221110 0000 01356999999
Q ss_pred EeccccccCCH-HHHHHHHH--HhcCCCCeEEEEEEcc
Q 024311 194 LTEIPYSVTSL-KKLYLLIK--KCLRPPYGVVYLATKK 228 (269)
Q Consensus 194 asD~iY~~~~~-~~L~~~l~--~~L~~p~g~~~va~k~ 228 (269)
. |..|..... +.+++.|. .+|+ ++|++++-+.+
T Consensus 120 l-DPPY~~~~~~~~~l~~l~~~~~l~-~~~~ii~E~~~ 155 (183)
T PF03602_consen 120 L-DPPYAKGLYYEELLELLAENNLLN-EDGLIIIEHSK 155 (183)
T ss_dssp E---STTSCHHHHHHHHHHHHTTSEE-EEEEEEEEEET
T ss_pred E-CCCcccchHHHHHHHHHHHCCCCC-CCEEEEEEecC
Confidence 8 999999984 88888887 4777 88888887644
No 73
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.90 E-value=3e-08 Score=88.60 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=72.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHH---cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACL---KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~---~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
.+.+|||||||+|...+.++. ....+|++.|.++.+++.+ +.|+.... ...++++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A-----~~~~~~~~-----------------~~~~v~~ 113 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERC-----RRHIDAYK-----------------APTPVDV 113 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHH-----HHHHHhcC-----------------CCCCeEE
Confidence 678999999999998876665 2334899999999999543 34432210 1124555
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|..+. ....+|+
T Consensus 114 ~~~d~~~~-----------------------------------------------------------------~~~~~D~ 128 (247)
T PRK15451 114 IEGDIRDI-----------------------------------------------------------------AIENASM 128 (247)
T ss_pred EeCChhhC-----------------------------------------------------------------CCCCCCE
Confidence 55543321 1135899
Q ss_pred EEEeccccccC--CHHHHHHHHHHhcCCCCeEEEEEEcc
Q 024311 192 ILLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKK 228 (269)
Q Consensus 192 IlasD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~k~ 228 (269)
|+++-+++..+ ....+++.+.+.|+ |+|.++++.+.
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~Lk-pGG~l~l~e~~ 166 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLN-PGGALVLSEKF 166 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcC-CCCEEEEEEec
Confidence 99887776543 34578999999998 99999988643
No 74
>PTZ00146 fibrillarin; Provisional
Probab=98.89 E-value=1.4e-07 Score=86.32 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=92.6
Q ss_pred ceeeccHH-HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 10 LKCWESSI-DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 10 ~~vW~as~-~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
+++|.--. -||.-|..-.. .-....+.+|||||||+|.....++.. + ..+|++.|+++.+++.+ .. ....
T Consensus 107 yR~w~p~rSKlaa~i~~g~~-~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dL-----l~-~ak~ 179 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVA-NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDL-----TN-MAKK 179 (293)
T ss_pred eeeeCCcccHHHHHHHCCcc-eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHH-----HH-Hhhh
Confidence 89998543 23433322211 012347789999999999988777654 3 24899999998776322 11 1000
Q ss_pred hhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccc
Q 024311 87 RERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRR 166 (269)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 166 (269)
.+++.++..|...... +
T Consensus 180 -------------------r~NI~~I~~Da~~p~~------------------------y-------------------- 196 (293)
T PTZ00146 180 -------------------RPNIVPIIEDARYPQK------------------------Y-------------------- 196 (293)
T ss_pred -------------------cCCCEEEECCccChhh------------------------h--------------------
Confidence 0233333333221000 0
Q ss_pred cccccCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHH-H---HH
Q 024311 167 SRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARH-L---RS 242 (269)
Q Consensus 167 ~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~-F---~~ 242 (269)
......||+|++ |+ ..++....++..++++|+ |+|.++|..+.+....+...++ | ++
T Consensus 197 ----------------~~~~~~vDvV~~-Dv-a~pdq~~il~~na~r~LK-pGG~~vI~ika~~id~g~~pe~~f~~ev~ 257 (293)
T PTZ00146 197 ----------------RMLVPMVDVIFA-DV-AQPDQARIVALNAQYFLK-NGGHFIISIKANCIDSTAKPEVVFASEVQ 257 (293)
T ss_pred ----------------hcccCCCCEEEE-eC-CCcchHHHHHHHHHHhcc-CCCEEEEEEeccccccCCCHHHHHHHHHH
Confidence 012237999988 55 357777778888999999 8999999877654433333333 3 46
Q ss_pred HhhhcCceeEEE
Q 024311 243 LVDEEGIFGAHL 254 (269)
Q Consensus 243 ~~~~~g~~~~~~ 254 (269)
.+++.||-..++
T Consensus 258 ~L~~~GF~~~e~ 269 (293)
T PTZ00146 258 KLKKEGLKPKEQ 269 (293)
T ss_pred HHHHcCCceEEE
Confidence 688888754444
No 75
>PRK04266 fibrillarin; Provisional
Probab=98.86 E-value=3.1e-07 Score=81.39 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=42.7
Q ss_pred cCceeeccHH-HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHH
Q 024311 8 GFLKCWESSI-DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIR 72 (269)
Q Consensus 8 ~G~~vW~as~-~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~ 72 (269)
+++.+|.... .++.+|....+ .-...+|.+|||+|||+|..++.++.. +..+|++.|.++++++
T Consensus 45 ~~~~~~~~~r~~~~~~ll~~~~-~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~ 110 (226)
T PRK04266 45 VEYREWNPRRSKLAAAILKGLK-NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMR 110 (226)
T ss_pred cEEEEECCCccchHHHHHhhHh-hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHH
Confidence 4567887533 22333333210 012336789999999999999887765 3348999999999884
No 76
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.86 E-value=1.1e-07 Score=88.53 Aligned_cols=38 Identities=37% Similarity=0.341 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.|.+|||.|||+|...+.++..++ +|++.|.++.+++.
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~ 219 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAG 219 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHH
Confidence 577999999999998888888876 89999999999843
No 77
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.86 E-value=8.8e-08 Score=87.37 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=32.0
Q ss_pred CEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHH
Q 024311 37 KRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~ 73 (269)
.+|||+|||+|..++.++...+ .+|+++|+++++++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~ 153 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAV 153 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 6999999999999998887543 589999999999844
No 78
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.85 E-value=6.6e-09 Score=79.82 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=25.6
Q ss_pred EEEEcCCCCHHHHHHHHc---CC-CeEEEEeCCHHHHHH
Q 024311 39 VLELSCGYGLPGIFACLK---GA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 39 VLELGcGtGl~gl~aa~~---ga-~~Vv~tD~~~~vl~~ 73 (269)
|||||||+|.....++.. +. .++++.|+++++++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~ 39 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLEL 39 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHH
Confidence 799999999888776654 32 699999999999844
No 79
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.84 E-value=3.4e-08 Score=85.41 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=33.5
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.++..++||||||.|.-++.+|.+|. .|++.|.++..++.
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~ 67 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEK 67 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHH
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 35778999999999999999999999 89999999988843
No 80
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.84 E-value=1.9e-07 Score=81.73 Aligned_cols=138 Identities=15% Similarity=0.173 Sum_probs=86.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 110 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (269)
..++.+|||||||+|..+..++.. +. .+|++.|+++ +. + .+++.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~-----------------------~~~v~ 94 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------P-----------------------IVGVD 94 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------C-----------------------CCCcE
Confidence 346889999999999998776654 33 4899999987 11 0 02456
Q ss_pred eecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 024311 111 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 190 (269)
Q Consensus 111 ~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fD 190 (269)
++.+|..+.+.+... . ......+||
T Consensus 95 ~i~~D~~~~~~~~~i-~------------------------------------------------------~~~~~~~~D 119 (209)
T PRK11188 95 FLQGDFRDELVLKAL-L------------------------------------------------------ERVGDSKVQ 119 (209)
T ss_pred EEecCCCChHHHHHH-H------------------------------------------------------HHhCCCCCC
Confidence 777777654311100 0 001345899
Q ss_pred EEEEeccccccCC-----------HHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEEEeeec
Q 024311 191 VILLTEIPYSVTS-----------LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMT 259 (269)
Q Consensus 191 lIlasD~iY~~~~-----------~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~~~~~~ 259 (269)
+|++.-+.+.... +..+++.+.++|+ |+|.+++..- .++...+|++.++. .|..+++.....
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk-pGG~~vi~~~-----~~~~~~~~l~~l~~-~f~~v~~~Kp~s 192 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLA-PGGSFVVKVF-----QGEGFDEYLREIRS-LFTKVKVRKPDS 192 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEEe-----cCcCHHHHHHHHHh-CceEEEEECCcc
Confidence 9998554443221 2457788888998 8999888642 23456777766553 467777766555
Q ss_pred ----CcceEEE
Q 024311 260 ----DRDIWKF 266 (269)
Q Consensus 260 ----~~~i~~~ 266 (269)
.+|++-+
T Consensus 193 sr~~s~e~~~~ 203 (209)
T PRK11188 193 SRARSREVYIV 203 (209)
T ss_pred ccccCceeEEE
Confidence 2455544
No 81
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=3.4e-07 Score=83.64 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=32.2
Q ss_pred EEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHH
Q 024311 38 RVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 38 ~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~ 73 (269)
+|||||||+|..++.++...+ .+|+++|+|++.++.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~ 149 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALAL 149 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHH
Confidence 899999999999999888765 489999999999944
No 82
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.84 E-value=1.2e-07 Score=93.22 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~ 73 (269)
++.+|||+|||+|..++.++. .+..+|+++|+++.+++.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~ 177 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEV 177 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHH
Confidence 356899999999999987665 344589999999999854
No 83
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.83 E-value=5.4e-08 Score=86.22 Aligned_cols=105 Identities=17% Similarity=0.150 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc---CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK---GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~---ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
.+.+|||+|||+|...+.++.. ...+|++.|+++.+++. .+.++.... ...++++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~-----a~~~~~~~~-----------------~~~~v~~ 110 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVER-----CRQHIAAYH-----------------SEIPVEI 110 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHH-----HHHHHHhcC-----------------CCCCeEE
Confidence 6779999999999988777653 23489999999999854 334432110 1124555
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|+... ....+|+
T Consensus 111 ~~~d~~~~-----------------------------------------------------------------~~~~~d~ 125 (239)
T TIGR00740 111 LCNDIRHV-----------------------------------------------------------------EIKNASM 125 (239)
T ss_pred EECChhhC-----------------------------------------------------------------CCCCCCE
Confidence 55554332 1125899
Q ss_pred EEEeccccccC--CHHHHHHHHHHhcCCCCeEEEEEEc
Q 024311 192 ILLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATK 227 (269)
Q Consensus 192 IlasD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~k 227 (269)
|+++.++.+.. ....+++.+.+.|+ |+|.++++..
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~d~ 162 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLN-PNGVLVLSEK 162 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcC-CCeEEEEeec
Confidence 99888877653 34678999999998 8999988743
No 84
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.82 E-value=1.4e-07 Score=86.34 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|..++.++... ..+|+++|+++.+++.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~ 160 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAV 160 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 35699999999999999888753 3489999999999844
No 85
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.81 E-value=8.6e-08 Score=91.21 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=33.0
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
-.+.+|||+|||+|..++.++.. |. +|+++|+++++++.
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~ 205 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKL 205 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 36789999999999999877764 55 89999999998844
No 86
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=2.9e-07 Score=84.27 Aligned_cols=46 Identities=33% Similarity=0.659 Sum_probs=36.4
Q ss_pred CCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
+.+|||||||.|..|+.+++..+ .+|+++|.|...++.+ +.|+..|
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~a-r~Nl~~N 205 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESA-RKNLAAN 205 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHH-HHhHHHc
Confidence 33999999999999999988764 6899999999988543 3444433
No 87
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.80 E-value=1.4e-07 Score=82.40 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=34.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.++.+|||+|||+|..+..++..+. +|+++|.++.+++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~ 100 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEE 100 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHH
Confidence 4678999999999999988888877 69999999999854
No 88
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.78 E-value=8.9e-08 Score=87.18 Aligned_cols=102 Identities=24% Similarity=0.356 Sum_probs=75.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
+-.|++|||+|||-|.+.+.||.. |+ +|++++++++.... .+.-+... .+..++++
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~-----~~~r~~~~-----------------gl~~~v~v 126 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAY-----AEKRIAAR-----------------GLEDNVEV 126 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHH-----HHHHHHHc-----------------CCCcccEE
Confidence 457999999999999999998876 56 99999999988733 33222110 12234555
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
.-.||.+. .++||-
T Consensus 127 ~l~d~rd~------------------------------------------------------------------~e~fDr 140 (283)
T COG2230 127 RLQDYRDF------------------------------------------------------------------EEPFDR 140 (283)
T ss_pred Eecccccc------------------------------------------------------------------ccccce
Confidence 55555542 235999
Q ss_pred EEEeccccccCC--HHHHHHHHHHhcCCCCeEEEE
Q 024311 192 ILLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYL 224 (269)
Q Consensus 192 IlasD~iY~~~~--~~~L~~~l~~~L~~p~g~~~v 224 (269)
|++-+.+-+.-. ++.+++.++++|+ |+|++++
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~ll 174 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLL 174 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcC-CCceEEE
Confidence 999999988766 9999999999998 7887665
No 89
>PRK05785 hypothetical protein; Provisional
Probab=98.77 E-value=5.9e-08 Score=85.83 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||||||||.....++.....+|++.|.+++|++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~ 89 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKM 89 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 367999999999998877776632489999999999854
No 90
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.77 E-value=2e-07 Score=81.53 Aligned_cols=55 Identities=20% Similarity=0.166 Sum_probs=39.1
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCC--CeEEEEeCCHHHHHH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRC 73 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga--~~Vv~tD~~~~vl~~ 73 (269)
++..+..++.... ...++.+|||+|||+|..++.++.... .+|+..|+++++++.
T Consensus 61 ~~p~~~~~~~~~l----~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~ 117 (215)
T TIGR00080 61 SAPHMVAMMTELL----ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEK 117 (215)
T ss_pred chHHHHHHHHHHh----CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 3334444554443 134678999999999999988776533 359999999998843
No 91
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.77 E-value=2.6e-07 Score=85.43 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=31.7
Q ss_pred CEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHH
Q 024311 37 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 73 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~ 73 (269)
.+|||+|||+|..++.++... ..+|+++|+++.+++.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~ 172 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAV 172 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 689999999999998887653 3589999999999943
No 92
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.76 E-value=1.3e-07 Score=80.59 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=43.1
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCC-EEEEEcCCCCHHHHHHHHcCCC-eEEEEeCCHHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGK-RVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRC 73 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~-~VLELGcGtGl~gl~aa~~ga~-~Vv~tD~~~~vl~~ 73 (269)
++-..+++||..++...+ .-+.. +|||||||.|.+=.-++..|.. +.+++||++..+.+
T Consensus 46 ~ae~riv~wl~d~~~~~r-v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L 106 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISR-VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL 106 (227)
T ss_pred cHHHHHHHHHHhhhhhhh-hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH
Confidence 345678889988764111 12333 9999999999887777777653 49999999998854
No 93
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.74 E-value=1.4e-07 Score=69.56 Aligned_cols=102 Identities=28% Similarity=0.387 Sum_probs=70.9
Q ss_pred EEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCCCC
Q 024311 38 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWE 117 (269)
Q Consensus 38 ~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~ 117 (269)
+|+|+|||+|..+..++.....++++.|.++..++.+ +.+.... ....+++...|+.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~-----~~~~~~~------------------~~~~~~~~~~~~~ 57 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELA-----RKAAAAL------------------LADNVEVLKGDAE 57 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHH-----HHHHhcc------------------cccceEEEEcChh
Confidence 5899999999988777765567999999999887443 1111000 0123444444433
Q ss_pred CcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEecc
Q 024311 118 ELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEI 197 (269)
Q Consensus 118 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~ 197 (269)
... + ....+||+|++..+
T Consensus 58 ~~~-------------------------------------------------------~-------~~~~~~d~i~~~~~ 75 (107)
T cd02440 58 ELP-------------------------------------------------------P-------EADESFDVIISDPP 75 (107)
T ss_pred hhc-------------------------------------------------------c-------ccCCceEEEEEccc
Confidence 211 0 12458999999999
Q ss_pred ccc-cCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 198 PYS-VTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 198 iY~-~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
.+. ......+++.+.++|+ ++|.+++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~-~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLK-PGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcC-CCCEEEEE
Confidence 888 8888899999999998 88888776
No 94
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.74 E-value=2.6e-08 Score=92.31 Aligned_cols=41 Identities=32% Similarity=0.533 Sum_probs=36.9
Q ss_pred CCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 30 GQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 30 ~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
.+..|++|.|||+|||||++++.+|+.||++|++.|-+. +.
T Consensus 55 n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia 95 (346)
T KOG1499|consen 55 NKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IA 95 (346)
T ss_pred chhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HH
Confidence 456899999999999999999999999999999999854 44
No 95
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.72 E-value=9.4e-08 Score=83.93 Aligned_cols=63 Identities=19% Similarity=0.049 Sum_probs=50.3
Q ss_pred CCccCceeec---cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 5 KPDGFLKCWE---SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 5 ~ye~G~~vW~---as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+|..|-.-|. .+-.|++++.... .-.+.+||++|||.|.-++.+|..|. +|++.|+++..++.
T Consensus 6 ry~~~~~~w~~~~p~~~l~~~~~~l~-----~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~ 71 (213)
T TIGR03840 6 RWQEGQIGFHQSEVNPLLVKHWPALG-----LPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQ 71 (213)
T ss_pred HHhcCCCCCccCCCCHHHHHHHHhhC-----CCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHH
Confidence 5777777884 5567777776531 12567999999999999999999998 89999999998854
No 96
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.72 E-value=4.3e-07 Score=78.98 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|..+..++.. + ..+|++.|.++++++.
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~ 112 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIY 112 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence 5679999999999999766653 2 3489999999998854
No 97
>PHA03411 putative methyltransferase; Provisional
Probab=98.72 E-value=2.5e-07 Score=84.10 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
+.+|||+|||+|.+++.++.. +..+|++.|+++.+++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~ 103 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARI 103 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 458999999999999877664 24589999999998854
No 98
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.69 E-value=6.6e-07 Score=77.82 Aligned_cols=54 Identities=19% Similarity=0.077 Sum_probs=39.3
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
++-.+..++.... ...++.+|||+|||+|..+..++..+. +|+..|+++++++.
T Consensus 62 ~~p~~~~~l~~~l----~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~ 115 (212)
T PRK00312 62 SQPYMVARMTELL----ELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWE 115 (212)
T ss_pred CcHHHHHHHHHhc----CCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHH
Confidence 4444555555432 133678999999999999887777654 89999999998843
No 99
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.68 E-value=4e-07 Score=88.11 Aligned_cols=123 Identities=24% Similarity=0.293 Sum_probs=81.2
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCC
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPES 96 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~ 96 (269)
..|.+.+.+.. ....+.+|||||||+|..++.++..+. +|++.|.++++++. .+.|...+.
T Consensus 283 e~l~~~vl~~l----~~~~~~~VLDlgcGtG~~sl~la~~~~-~V~gvD~s~~al~~-----A~~n~~~~~--------- 343 (443)
T PRK13168 283 QKMVARALEWL----DPQPGDRVLDLFCGLGNFTLPLARQAA-EVVGVEGVEAMVER-----ARENARRNG--------- 343 (443)
T ss_pred HHHHHHHHHHh----cCCCCCEEEEEeccCCHHHHHHHHhCC-EEEEEeCCHHHHHH-----HHHHHHHcC---------
Confidence 44555555442 123568999999999999999888764 89999999999944 445554321
Q ss_pred CCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhh
Q 024311 97 SLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAW 176 (269)
Q Consensus 97 ~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W 176 (269)
. .+++|+.+|+.+... ..
T Consensus 344 --------~-~~v~~~~~d~~~~l~-----------------------------------------------~~------ 361 (443)
T PRK13168 344 --------L-DNVTFYHANLEEDFT-----------------------------------------------DQ------ 361 (443)
T ss_pred --------C-CceEEEEeChHHhhh-----------------------------------------------hh------
Confidence 1 247777777653200 00
Q ss_pred hhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc
Q 024311 177 ERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV 231 (269)
Q Consensus 177 ~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f 231 (269)
.....+||+|+. |..|.. ...+++.|.+ ++ |.+++||++....+
T Consensus 362 ------~~~~~~fD~Vi~-dPPr~g--~~~~~~~l~~-~~-~~~ivyvSCnp~tl 405 (443)
T PRK13168 362 ------PWALGGFDKVLL-DPPRAG--AAEVMQALAK-LG-PKRIVYVSCNPATL 405 (443)
T ss_pred ------hhhcCCCCEEEE-CcCCcC--hHHHHHHHHh-cC-CCeEEEEEeChHHh
Confidence 012347999987 888865 3455566666 35 88999999866543
No 100
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.68 E-value=1.9e-07 Score=84.44 Aligned_cols=41 Identities=22% Similarity=0.431 Sum_probs=33.2
Q ss_pred CCCccEEEEeccccccC--CHHHHHHHHHHhcCCCCeEEEEEEc
Q 024311 186 EGGYDVILLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATK 227 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~k 227 (269)
.++||+|++..++..-+ ....+++.+.++|+ |+|.++++..
T Consensus 201 ~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~-pGG~L~lg~~ 243 (264)
T smart00138 201 LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK-PGGYLFLGHS 243 (264)
T ss_pred cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC-CCeEEEEECc
Confidence 46899999998876553 45579999999998 9999998743
No 101
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.67 E-value=6.2e-07 Score=82.41 Aligned_cols=102 Identities=17% Similarity=0.095 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||+|||+|..++.+++..+ .++++.|. +.+++. .+.|+... .+..++++..
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------gl~~rv~~~~ 205 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDL-----VNENAAEK-----------------GVADRMRGIA 205 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHH-----HHHHHHhC-----------------CccceEEEEe
Confidence 557999999999999988877643 58999998 677743 34444321 0223455555
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|-.+. ....+|+|+
T Consensus 206 ~d~~~~-----------------------------------------------------------------~~~~~D~v~ 220 (306)
T TIGR02716 206 VDIYKE-----------------------------------------------------------------SYPEADAVL 220 (306)
T ss_pred cCccCC-----------------------------------------------------------------CCCCCCEEE
Confidence 542211 112469999
Q ss_pred EeccccccCC--HHHHHHHHHHhcCCCCeEEEEE
Q 024311 194 LTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 194 asD~iY~~~~--~~~L~~~l~~~L~~p~g~~~va 225 (269)
.+-++|+... ...+++.+.+.|+ |+|+++|.
T Consensus 221 ~~~~lh~~~~~~~~~il~~~~~~L~-pgG~l~i~ 253 (306)
T TIGR02716 221 FCRILYSANEQLSTIMCKKAFDAMR-SGGRLLIL 253 (306)
T ss_pred eEhhhhcCChHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 9999986643 4578999999998 89999887
No 102
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.66 E-value=8.4e-07 Score=85.49 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
+|.+|||+|||+|..++.++..+. .+|++.|.++.+++ .++.|+.
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~-----~~~~n~~ 289 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLE-----RVRENLQ 289 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHH-----HHHHHHH
Confidence 678999999999999987776543 58999999999984 4555554
No 103
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.66 E-value=1.7e-07 Score=91.11 Aligned_cols=127 Identities=21% Similarity=0.194 Sum_probs=83.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+++|||||||+|..+..++..+. +|++.|+++.+++. +...|- ..+++.++.+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~----a~~~~~---------------------~~~~i~~~~~ 90 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKK----NESING---------------------HYKNVKFMCA 90 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHH----HHHHhc---------------------cCCceEEEEe
Confidence 577999999999999988887754 89999999998842 221110 0124555555
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|..... + .....+||+|++
T Consensus 91 d~~~~~-------------------------------------------------~------------~~~~~~fD~I~~ 109 (475)
T PLN02336 91 DVTSPD-------------------------------------------------L------------NISDGSVDLIFS 109 (475)
T ss_pred cccccc-------------------------------------------------c------------CCCCCCEEEEeh
Confidence 443210 0 013458999999
Q ss_pred eccccccCC--HHHHHHHHHHhcCCCCeEEEEEEcccccc----------cCcchHHHHHHhhhcCc
Q 024311 195 TEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKNYVG----------FNNAARHLRSLVDEEGI 249 (269)
Q Consensus 195 sD~iY~~~~--~~~L~~~l~~~L~~p~g~~~va~k~~~fg----------~~~~~~~F~~~~~~~g~ 249 (269)
..++++... ...+++.+.++|+ |+|++++.-...... .-.....+.+.+.+.|+
T Consensus 110 ~~~l~~l~~~~~~~~l~~~~r~Lk-~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 175 (475)
T PLN02336 110 NWLLMYLSDKEVENLAERMVKWLK-VGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHT 175 (475)
T ss_pred hhhHHhCCHHHHHHHHHHHHHhcC-CCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHhee
Confidence 999987654 5788999999998 899887742111000 00134566667777775
No 104
>PLN02672 methionine S-methyltransferase
Probab=98.66 E-value=7.1e-07 Score=94.04 Aligned_cols=65 Identities=26% Similarity=0.303 Sum_probs=47.2
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
+-+..|++.|...+ ...+++++|||||||+|..++.++... ..+|+++|+++++++.+ ..|+.+|
T Consensus 100 peTE~lve~L~~~~---~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A-~~Na~~n 165 (1082)
T PLN02672 100 DWSFTFYEGLNRHP---DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVA-WINLYLN 165 (1082)
T ss_pred hhHHHHHHHHHhcc---cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHH-HHHHHHc
Confidence 44566777754432 223568899999999999999888754 36899999999999543 3555544
No 105
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.66 E-value=2.6e-07 Score=79.36 Aligned_cols=48 Identities=31% Similarity=0.458 Sum_probs=42.2
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.+.|.+||||-||+|.+|+.|+..||++|++.|.|...+ .-++.|+..
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~-----~~l~~N~~~ 88 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAV-----KILKENLKA 88 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHH-----HHHHHHHHH
Confidence 378999999999999999999999999999999999988 445666543
No 106
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.66 E-value=6.1e-07 Score=77.30 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~ 73 (269)
...+|||||||+|..++.++... ...|++.|.++++++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~ 55 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLA 55 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHH
Confidence 45699999999999998777653 3589999999999854
No 107
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.62 E-value=8.2e-07 Score=77.70 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=39.2
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCHHHHHH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~~vl~~ 73 (269)
++-.+..++.... ...++.+|||+|||+|..+..++.. +. .+|+..|+++++++.
T Consensus 60 ~~p~~~~~~~~~l----~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~ 116 (212)
T PRK13942 60 SAIHMVAIMCELL----DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEK 116 (212)
T ss_pred CcHHHHHHHHHHc----CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence 3444445554432 1336789999999999999776654 32 489999999999854
No 108
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.62 E-value=2.8e-07 Score=81.17 Aligned_cols=63 Identities=21% Similarity=0.092 Sum_probs=47.2
Q ss_pred CCccCceeec---cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 5 KPDGFLKCWE---SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 5 ~ye~G~~vW~---as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+|..|-..|. ..-.|++|+.... .-++.+||++|||.|.-.+.+|..|. +|++.|+++..++.
T Consensus 9 rw~~~~~~~~~~~p~~~L~~~~~~~~-----~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~ 74 (218)
T PRK13255 9 KWAENQIGFHQEEVNPLLQKYWPALA-----LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQ 74 (218)
T ss_pred HHcCCCCCCCCCCCCHHHHHHHHhhC-----CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHH
Confidence 4555655564 3445666665421 12567999999999999999999998 89999999998864
No 109
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.61 E-value=1.5e-06 Score=74.79 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|..++.++.. +..+|++.|.++++++.
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~ 79 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNL 79 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 5779999999999999887754 33589999999999844
No 110
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.61 E-value=4.6e-07 Score=76.23 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
.+.+|||+|||+|..+..++..+ .+|++.|+++.+++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~ 49 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAP 49 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHH
Confidence 56799999999999998888775 48999999999884
No 111
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.60 E-value=4.9e-07 Score=81.86 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC----CCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG----AGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g----a~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|.....++... ..+|++.|+++.+++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~ 127 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKY 127 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHH
Confidence 45689999999998886655431 1379999999999854
No 112
>PLN03075 nicotianamine synthase; Provisional
Probab=98.60 E-value=1.3e-06 Score=80.35 Aligned_cols=133 Identities=16% Similarity=0.155 Sum_probs=84.5
Q ss_pred CCCEEEEEcCCCC-HHHHHHH-Hc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 35 RGKRVLELSCGYG-LPGIFAC-LK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 35 ~~~~VLELGcGtG-l~gl~aa-~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
..++|+|+|||.| +.+++++ .. ...+++..|.++++++.+ +.++... ..+..+++|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~A-----r~~~~~~----------------~gL~~rV~F 181 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVA-----RRLVSSD----------------PDLSKRMFF 181 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHH-----HHHhhhc----------------cCccCCcEE
Confidence 7789999999955 6666544 33 335899999999988442 2322110 012346777
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|..+.. ...++||+
T Consensus 182 ~~~Da~~~~---------------------------------------------------------------~~l~~FDl 198 (296)
T PLN03075 182 HTADVMDVT---------------------------------------------------------------ESLKEYDV 198 (296)
T ss_pred EECchhhcc---------------------------------------------------------------cccCCcCE
Confidence 666543210 12358999
Q ss_pred EEEeccccc-cCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHH----HHhhhcCceeEEEEeeec
Q 024311 192 ILLTEIPYS-VTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLR----SLVDEEGIFGAHLIKEMT 259 (269)
Q Consensus 192 IlasD~iY~-~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~----~~~~~~g~~~~~~~~~~~ 259 (269)
|+..=++|. ......+++.+.+.|+ |+|.+++..- . |...|+ +...-+||-...++....
T Consensus 199 VF~~ALi~~dk~~k~~vL~~l~~~Lk-PGG~Lvlr~~---~----G~r~~LYp~v~~~~~~gf~~~~~~~P~~ 263 (296)
T PLN03075 199 VFLAALVGMDKEEKVKVIEHLGKHMA-PGALLMLRSA---H----GARAFLYPVVDPCDLRGFEVLSVFHPTD 263 (296)
T ss_pred EEEecccccccccHHHHHHHHHHhcC-CCcEEEEecc---c----chHhhcCCCCChhhCCCeEEEEEECCCC
Confidence 999855665 4789999999999999 9999988751 2 344443 223345775444444433
No 113
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.60 E-value=4.9e-07 Score=83.73 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=37.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
++.+|||||||+|..++.++..+. +|++.|.++.+++. .+.|+..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~-----A~~n~~~ 217 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIAC-----AKQSAAE 217 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHH-----HHHHHHH
Confidence 578999999999999999998874 89999999999843 4555543
No 114
>PRK06922 hypothetical protein; Provisional
Probab=98.60 E-value=3.2e-07 Score=91.78 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~ 73 (269)
.++.+|||+|||+|..+..++. .+..+|+++|+++.+++.
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~ 457 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDT 457 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 4688999999999988866554 444599999999999844
No 115
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.59 E-value=5.5e-07 Score=85.40 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=75.5
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
..+.+|||||||+|..++.++..+. +|++.|.++..++ ..+.|+..+. . .+++|+.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~-~v~~vE~~~~av~-----~a~~N~~~~~-----------------~-~~~~~~~ 287 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDT-QLTGIEIESEAIA-----CAQQSAQMLG-----------------L-DNLSFAA 287 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCC-eEEEEECCHHHHH-----HHHHHHHHcC-----------------C-CcEEEEE
Confidence 3567999999999999999987764 8999999999984 4455554331 1 2466665
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+.. . ....+||+|+
T Consensus 288 ~d~~~~~---------------------------------------------------------~-----~~~~~~D~vi 305 (374)
T TIGR02085 288 LDSAKFA---------------------------------------------------------T-----AQMSAPELVL 305 (374)
T ss_pred CCHHHHH---------------------------------------------------------H-----hcCCCCCEEE
Confidence 5543210 0 0113599988
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV 231 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f 231 (269)
. |..|. -..+.+++.|.+ ++ |++++|+++....+
T Consensus 306 ~-DPPr~-G~~~~~l~~l~~-~~-p~~ivyvsc~p~Tl 339 (374)
T TIGR02085 306 V-NPPRR-GIGKELCDYLSQ-MA-PKFILYSSCNAQTM 339 (374)
T ss_pred E-CCCCC-CCcHHHHHHHHh-cC-CCeEEEEEeCHHHH
Confidence 8 88885 456677777765 45 88999999977544
No 116
>PRK06202 hypothetical protein; Provisional
Probab=98.52 E-value=4.8e-07 Score=79.79 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHH----cCC-CeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL----KGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~----~ga-~~Vv~tD~~~~vl~~ 73 (269)
++.+|||||||+|..+..++. .|. .+|+++|+++++++.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~ 103 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAF 103 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHH
Confidence 567999999999988766553 232 389999999999854
No 117
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.51 E-value=3.3e-06 Score=81.72 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
++.+|||+|||+|..++.++.. +..+|++.|.++..++ .++.|+.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~-----~~~~n~~ 296 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLK-----LIEENAK 296 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHH-----HHHHHHH
Confidence 5779999999999999877754 3458999999999884 4455554
No 118
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.49 E-value=1.5e-06 Score=82.72 Aligned_cols=128 Identities=27% Similarity=0.332 Sum_probs=87.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
..+|++||+|-|=||..|+.||..||++|+..|.+...|+.+ .+|+.+|--. ...+.++
T Consensus 215 ~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a-~~N~~LNg~~--------------------~~~~~~i 273 (393)
T COG1092 215 LAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWA-RENAELNGLD--------------------GDRHRFI 273 (393)
T ss_pred hccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHH-HHHHHhcCCC--------------------ccceeee
Confidence 346999999999999999999999999999999999999653 3444444310 1233444
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|--+ |=+ .......+||+|
T Consensus 274 ~~Dvf~---------------------------------------------------------~l~--~~~~~g~~fDlI 294 (393)
T COG1092 274 VGDVFK---------------------------------------------------------WLR--KAERRGEKFDLI 294 (393)
T ss_pred hhhHHH---------------------------------------------------------HHH--HHHhcCCcccEE
Confidence 333111 100 111245699999
Q ss_pred EEeccc---------cc-cCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhh
Q 024311 193 LLTEIP---------YS-VTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDE 246 (269)
Q Consensus 193 lasD~i---------Y~-~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~ 246 (269)
|. |.. ++ ..++..|+....++|+ |+|.+++++..+.+ +.+.|++.+.+
T Consensus 295 il-DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~-pgG~l~~~s~~~~~----~~~~f~~~i~~ 352 (393)
T COG1092 295 IL-DPPSFARSKKQEFSAQRDYKDLNDLALRLLA-PGGTLVTSSCSRHF----SSDLFLEIIAR 352 (393)
T ss_pred EE-CCcccccCcccchhHHHHHHHHHHHHHHHcC-CCCEEEEEecCCcc----CHHHHHHHHHH
Confidence 97 321 11 2445667888888898 89999999888765 57788877765
No 119
>PRK03612 spermidine synthase; Provisional
Probab=98.49 E-value=1.3e-06 Score=86.36 Aligned_cols=40 Identities=28% Similarity=0.214 Sum_probs=34.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~ 74 (269)
+.++||++|||+|.....+++.+. .+|++.|+++++++.+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~a 337 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELA 337 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHH
Confidence 567999999999998877777654 7999999999999654
No 120
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.48 E-value=1.5e-06 Score=77.23 Aligned_cols=136 Identities=13% Similarity=0.190 Sum_probs=83.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHH--cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~--~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
+.++|||+|||+|..++.++. .+..+|+..|++++.++ -.+.|+..+. +..+++++
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~-----~A~~n~~~~g-----------------l~~~i~~~ 125 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYE-----VGLEFIKKAG-----------------VDHKINFI 125 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHH-----HHHHHHHHcC-----------------CCCcEEEE
Confidence 678999999999987766554 33569999999999884 3455554321 22456776
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.- ..+. .....++||+|
T Consensus 126 ~gda~~~L---~~l~------------------------------------------------------~~~~~~~fD~V 148 (234)
T PLN02781 126 QSDALSAL---DQLL------------------------------------------------------NNDPKPEFDFA 148 (234)
T ss_pred EccHHHHH---HHHH------------------------------------------------------hCCCCCCCCEE
Confidence 66654320 0000 00124589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccc---------------cCcchHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG---------------FNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg---------------~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
+. |.- ...+..+++.+.++|+ |+|++++-.- .+.| ....+++|.+.+.+.--+.+.+
T Consensus 149 fi-Da~--k~~y~~~~~~~~~ll~-~GG~ii~dn~-l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~ 220 (234)
T PLN02781 149 FV-DAD--KPNYVHFHEQLLKLVK-VGGIIAFDNT-LWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQ 220 (234)
T ss_pred EE-CCC--HHHHHHHHHHHHHhcC-CCeEEEEEcC-CcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEE
Confidence 87 543 2456677888888898 8888765321 1112 0123568888877665444444
No 121
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.48 E-value=3.6e-06 Score=81.07 Aligned_cols=122 Identities=20% Similarity=0.245 Sum_probs=79.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+.+|||||||+|..++.++... .+|++.|.++++++ ..+.|+..+. ..+++|+.+
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~-----~a~~n~~~~~------------------~~nv~~~~~ 347 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVE-----KAQQNAELNG------------------IANVEFLAG 347 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHH-----HHHHHHHHhC------------------CCceEEEeC
Confidence 45799999999999999988765 48999999999984 3445554331 135777777
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|+.+.. .. + ......||+|+.
T Consensus 348 d~~~~l--~~---------------------------------------------------~------~~~~~~~D~vi~ 368 (431)
T TIGR00479 348 TLETVL--PK---------------------------------------------------Q------PWAGQIPDVLLL 368 (431)
T ss_pred CHHHHH--HH---------------------------------------------------H------HhcCCCCCEEEE
Confidence 654310 00 0 012346999986
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCc
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~ 249 (269)
|..+. ...+.+++.+.+ ++ |++++|+++... +...=+..+.+.|+
T Consensus 369 -dPPr~-G~~~~~l~~l~~-l~-~~~ivyvsc~p~------tlard~~~l~~~gy 413 (431)
T TIGR00479 369 -DPPRK-GCAAEVLRTIIE-LK-PERIVYVSCNPA------TLARDLEFLCKEGY 413 (431)
T ss_pred -CcCCC-CCCHHHHHHHHh-cC-CCEEEEEcCCHH------HHHHHHHHHHHCCe
Confidence 66664 335667677775 56 788999987643 23334455556664
No 122
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.47 E-value=3.4e-06 Score=72.39 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
.+.+|||+|||+|.....++......+++.|+++++++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~ 50 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVL 50 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHH
Confidence 46799999999998887766544447899999998774
No 123
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.46 E-value=2.7e-06 Score=72.71 Aligned_cols=37 Identities=30% Similarity=0.249 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAE 69 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~ 69 (269)
..+|.+|||+|||+|.....++.. +..+|++.|+++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM 68 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence 357889999999999888766553 3457999999984
No 124
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.46 E-value=1.7e-05 Score=68.03 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=85.8
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
..+|.+++|+|||||-.++.+++.++ .+|++.|.+++.+ ..+++|..... -+++..
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~-----~~~~~N~~~fg------------------~~n~~v 88 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEAL-----ELIERNAARFG------------------VDNLEV 88 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHH-----HHHHHHHHHhC------------------CCcEEE
Confidence 34788999999999999998887655 5899999999998 56677775431 135555
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
.+++--+. |+ ....||.
T Consensus 89 v~g~Ap~~--------------------------------------------------L~-------------~~~~~da 105 (187)
T COG2242 89 VEGDAPEA--------------------------------------------------LP-------------DLPSPDA 105 (187)
T ss_pred EeccchHh--------------------------------------------------hc-------------CCCCCCE
Confidence 55542211 10 1127888
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCc
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~ 249 (269)
|+-.=. ...+.+++.+-..|+ |+|++.+-+-.. .+...-++.+++.|+
T Consensus 106 iFIGGg----~~i~~ile~~~~~l~-~ggrlV~naitl-----E~~~~a~~~~~~~g~ 153 (187)
T COG2242 106 IFIGGG----GNIEEILEAAWERLK-PGGRLVANAITL-----ETLAKALEALEQLGG 153 (187)
T ss_pred EEECCC----CCHHHHHHHHHHHcC-cCCeEEEEeecH-----HHHHHHHHHHHHcCC
Confidence 874333 568889999999998 889888765443 356677788888887
No 125
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.46 E-value=1.1e-06 Score=78.10 Aligned_cols=57 Identities=21% Similarity=0.132 Sum_probs=49.0
Q ss_pred eeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 11 KCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 11 ~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
-+..++.-|.+.+... ...++|++|||+|||||..+..++..|+++|++.|.++.+|
T Consensus 55 ~vsr~~~kL~~~l~~~----~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l 111 (228)
T TIGR00478 55 FVSRGGEKLKEALEEF----NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQL 111 (228)
T ss_pred hhhhhHHHHHHHHHhc----CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 4577788888887765 24579999999999999999999999999999999999877
No 126
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=1.1e-05 Score=68.86 Aligned_cols=68 Identities=21% Similarity=0.355 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH-cC-CCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~-~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
+-+..|.+.|++....-. ....+-+||+|||+|..+-++++ .+ ....++||+||..++ +|+...+.|-
T Consensus 23 EDTFlLlDaLekd~~eL~-~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~-~Tl~TA~~n~ 92 (209)
T KOG3191|consen 23 EDTFLLLDALEKDAAELK-GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALE-ATLETARCNR 92 (209)
T ss_pred chhhHHHHHHHHHHHHHh-hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHH-HHHHHHHhcC
Confidence 456778888876543111 11256899999999999865554 33 346899999999884 4556666554
No 127
>PRK00811 spermidine synthase; Provisional
Probab=98.44 E-value=4.4e-06 Score=76.38 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=34.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~ 74 (269)
+.++||+||||.|.....+++. +..+|++.|+++++++.+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a 116 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVC 116 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHH
Confidence 4679999999999998777665 567999999999999664
No 128
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.44 E-value=5.6e-07 Score=79.77 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=34.4
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+++.|+|+++.|+++- +++.+.+.+.++|++++|.+.|-.
T Consensus 98 e~SVDlI~~Aqa~HWF-dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 98 EESVDLITAAQAVHWF-DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred CcceeeehhhhhHHhh-chHHHHHHHHHHcCCCCCEEEEEE
Confidence 6799999999999976 589999999999998887776643
No 129
>PHA03412 putative methyltransferase; Provisional
Probab=98.44 E-value=4.7e-06 Score=74.26 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc----CCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK----GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~----ga~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|..++.++.. ...+|++.|+++.+++.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~ 91 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKL 91 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHH
Confidence 4679999999999999887753 23489999999998854
No 130
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.42 E-value=2.5e-06 Score=74.28 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=36.4
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
.+.++|.|+++=++.+.++....++.++++|+ |+|++++-
T Consensus 142 ~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR-pgG~iifi 181 (252)
T KOG4300|consen 142 ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR-PGGRIIFI 181 (252)
T ss_pred ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcC-CCcEEEEE
Confidence 46799999999999999999999999999999 88887764
No 131
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.42 E-value=7e-06 Score=79.58 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=43.0
Q ss_pred ceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 10 LKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 10 ~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
+.+++.+-.++-.+.. ...|.+|||+|||+|..++.++.. +..+|++.|.++.+++ .++.|+.
T Consensus 232 ~~vqd~~s~l~~~~l~-------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~-----~~~~~~~ 296 (445)
T PRK14904 232 VSVQNPTQALACLLLN-------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLE-----KIRSHAS 296 (445)
T ss_pred EEEeCHHHHHHHHhcC-------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHH-----HHHHHHH
Confidence 4677655444444433 235789999999999888766542 2348999999999984 3455553
No 132
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.41 E-value=3e-07 Score=81.04 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=49.0
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccc----ccc------CcchHHHHHHhhhcCceeEEE
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY----VGF------NNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~----fg~------~~~~~~F~~~~~~~g~~~~~~ 254 (269)
.+++||+|.++||+-..-.++.++-....+|+ |+|.+.++....- |-+ .++-.--.+.++..|+....+
T Consensus 185 ~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~-~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 185 TQERFDLIVAADVLPYLGALEGLFAGAAGLLA-PGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred cCCcccchhhhhHHHhhcchhhHHHHHHHhcC-CCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEe
Confidence 56799999999999889999999999999998 8888777643210 111 122333456777888754444
No 133
>PRK04148 hypothetical protein; Provisional
Probab=98.38 E-value=1.9e-06 Score=70.40 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=40.5
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCH-HHHHHHHcCCCeEEEEeCCHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl-~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
.+++||.++.. ..++++|||+|||+|. .+..++..|. .|+++|.++..+
T Consensus 3 ~i~~~l~~~~~----~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV 52 (134)
T PRK04148 3 TIAEFIAENYE----KGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAV 52 (134)
T ss_pred HHHHHHHHhcc----cccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHH
Confidence 57888888652 2367899999999996 8888888887 899999999876
No 134
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.38 E-value=6.6e-06 Score=79.27 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
+|.+|||+|||+|..++.++. .+..+|++.|.++..++. ++.|+.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~-----~~~n~~ 283 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKR-----VYENLK 283 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHH-----HHHHHH
Confidence 578999999999988877665 344589999999999843 455554
No 135
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.36 E-value=2.4e-06 Score=79.18 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=34.2
Q ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCC
Q 024311 31 QLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLS 67 (269)
Q Consensus 31 ~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~ 67 (269)
..+|+|+.|||+|||+|+++++|++.||++|.+.+-+
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS 209 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS 209 (517)
T ss_pred ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh
Confidence 4589999999999999999999999999999998864
No 136
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.36 E-value=1.1e-05 Score=75.21 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC--CeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga--~~Vv~tD~~~~vl~~ 73 (269)
++.+|||+|||+|..++.++.... .+|++.|.++++++.
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~ 120 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEI 120 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHH
Confidence 678999999999999987776432 369999999998843
No 137
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.35 E-value=1.1e-05 Score=73.02 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||+|||+|..++.++.. + ..+|++.|.++..++ .++.|+..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~-----~~~~n~~~ 118 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTK-----VLIANINR 118 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHH-----HHHHHHHH
Confidence 5789999999999888776553 2 248999999999984 34555543
No 138
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.35 E-value=3.3e-06 Score=72.83 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=43.8
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccc-------------c-----------C----cc
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG-------------F-----------N----NA 236 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg-------------~-----------~----~~ 236 (269)
.+.+||+||.|+++......+.+++.+.|.-+ .++|+-+.+-++ + . -+
T Consensus 72 ~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr----~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~T 147 (193)
T PF07021_consen 72 PDQSFDYVILSQTLQAVRRPDEVLEEMLRVGR----RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCT 147 (193)
T ss_pred CCCCccEEehHhHHHhHhHHHHHHHHHHHhcC----eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCccccc
Confidence 56799999999999999888888777766532 444543322111 0 0 16
Q ss_pred hHHHHHHhhhcCce
Q 024311 237 ARHLRSLVDEEGIF 250 (269)
Q Consensus 237 ~~~F~~~~~~~g~~ 250 (269)
+.+|.+++++.|+-
T Consensus 148 i~DFe~lc~~~~i~ 161 (193)
T PF07021_consen 148 IKDFEDLCRELGIR 161 (193)
T ss_pred HHHHHHHHHHCCCE
Confidence 79999999999974
No 139
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.35 E-value=8.1e-06 Score=78.89 Aligned_cols=45 Identities=24% Similarity=0.211 Sum_probs=34.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
.|.+|||+|||+|.-++.++.. +..+|++.|.++..++ -++.|+.
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~-----~~~~n~~ 283 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQ-----LVEKHAK 283 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHH-----HHHHHHH
Confidence 5789999999999888766653 2358999999999984 4455553
No 140
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.34 E-value=1.5e-06 Score=76.08 Aligned_cols=99 Identities=21% Similarity=0.287 Sum_probs=73.7
Q ss_pred CCCCEEEEEcCCCCHHH-HHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPG-IFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~g-l~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.+-.+|.|||||+|... +++.+.+...|++.|-+++||... + + .-++++|.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~A-----a----------~-------------rlp~~~f~ 80 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKA-----A----------Q-------------RLPDATFE 80 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHH-----H----------H-------------hCCCCcee
Confidence 35569999999999877 556666667999999999998431 1 0 12456665
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+ | .....+|+|
T Consensus 81 ~aDl~~---------------------------------------------------------w-------~p~~~~dll 96 (257)
T COG4106 81 EADLRT---------------------------------------------------------W-------KPEQPTDLL 96 (257)
T ss_pred cccHhh---------------------------------------------------------c-------CCCCccchh
Confidence 554222 2 134589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
+++-++.+..++..|+..+-..|. |+|++-|=
T Consensus 97 faNAvlqWlpdH~~ll~rL~~~L~-Pgg~LAVQ 128 (257)
T COG4106 97 FANAVLQWLPDHPELLPRLVSQLA-PGGVLAVQ 128 (257)
T ss_pred hhhhhhhhccccHHHHHHHHHhhC-CCceEEEE
Confidence 999999999999999988888898 88876654
No 141
>PRK04457 spermidine synthase; Provisional
Probab=98.34 E-value=5.6e-06 Score=74.90 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~ 73 (269)
+.++|||||||+|.....++. .+..+|++.|+++++++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~ 105 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAV 105 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 467999999999998876654 444589999999999854
No 142
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.30 E-value=8.6e-06 Score=77.51 Aligned_cols=39 Identities=13% Similarity=0.178 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~ 73 (269)
.+..+||||||+|...+.+|...+ ..+++.|.++.++..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~ 161 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQ 161 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHH
Confidence 567999999999999988887643 489999999998854
No 143
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.30 E-value=1.9e-05 Score=76.24 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=35.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||+|||+|..++.++.. + ..+|++.|.++..+ ..++.|+..
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl-----~~~~~n~~r 299 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL-----KKLQENAQR 299 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH-----HHHHHHHHH
Confidence 5789999999999988776654 2 34899999999988 445566543
No 144
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.30 E-value=1.5e-05 Score=69.60 Aligned_cols=136 Identities=21% Similarity=0.329 Sum_probs=85.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
+-++|||+|+++|..++.+|.. + ..+|+..|.+++..+ ..+.|+..+. +..+|++.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~-----~A~~~~~~ag-----------------~~~~I~~~ 102 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE-----IARENFRKAG-----------------LDDRIEVI 102 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH-----HHHHHHHHTT-----------------GGGGEEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH-----HHHHHHHhcC-----------------CCCcEEEE
Confidence 5679999999999999988863 2 248999999998873 3444554321 22467776
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.- ..+. .....++||+|
T Consensus 103 ~gda~~~l---~~l~------------------------------------------------------~~~~~~~fD~V 125 (205)
T PF01596_consen 103 EGDALEVL---PELA------------------------------------------------------NDGEEGQFDFV 125 (205)
T ss_dssp ES-HHHHH---HHHH------------------------------------------------------HTTTTTSEEEE
T ss_pred EeccHhhH---HHHH------------------------------------------------------hccCCCceeEE
Confidence 66644321 0000 00124689999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccc-cCc---------chHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG-FNN---------AARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg-~~~---------~~~~F~~~~~~~g~~~~~~ 254 (269)
+- |. +...+...++.+.++|+ |+|++++- ...+.| +.. .+.+|.+.+.+.--+.+.+
T Consensus 126 Fi-Da--~K~~y~~y~~~~~~ll~-~ggvii~D-N~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~l 192 (205)
T PF01596_consen 126 FI-DA--DKRNYLEYFEKALPLLR-PGGVIIAD-NVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVL 192 (205)
T ss_dssp EE-ES--TGGGHHHHHHHHHHHEE-EEEEEEEE-TTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEE
T ss_pred EE-cc--cccchhhHHHHHhhhcc-CCeEEEEc-cccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEE
Confidence 97 55 46778888888888998 77776654 333333 111 2578999999876555544
No 145
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.27 E-value=1.3e-05 Score=75.78 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
+..|.+++.+... ..+.+||||+||+|..|+.++.. +++|++.|.++.+++. ++.|+..+
T Consensus 192 ~e~l~~~v~~~~~-----~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~-----a~~N~~~~ 251 (362)
T PRK05031 192 NEKMLEWALDATK-----GSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAA-----AQYNIAAN 251 (362)
T ss_pred HHHHHHHHHHHhh-----cCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHH-----HHHHHHHh
Confidence 4455555555431 12357999999999999977765 5699999999999843 44555443
No 146
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.26 E-value=6.8e-06 Score=79.78 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-----CCeEEEEeCCHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-----AGTVHFQDLSAETI 71 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-----a~~Vv~tD~~~~vl 71 (269)
+++.||++|||+|.++..+++++ +.+|++.+-|+...
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~ 227 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV 227 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH
Confidence 68899999999999998887765 67999999998655
No 147
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.25 E-value=9.9e-06 Score=76.34 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=35.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 36 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
+.+|||||||+|..|+.++... ++|++.|.++++++ ..+.|+..+
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~-----~a~~n~~~~ 242 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVN-----AAQYNIAAN 242 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHH-----HHHHHHHHc
Confidence 3479999999999999877654 59999999999984 445555443
No 148
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.25 E-value=1.1e-05 Score=74.17 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC--CCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g--a~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||||||+|.....++... ..+|++.|+++++|+.
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~ 103 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKE 103 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHH
Confidence 56799999999998886655442 2489999999999954
No 149
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.25 E-value=7.4e-06 Score=77.78 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=39.4
Q ss_pred CCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 36 GKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
+.+|||+.||+|..||.++.. |+++|++.|.|++.+ +.++.|+..|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av-----~~i~~N~~~N 92 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAV-----ESIKNNVEYN 92 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHH-----HHHHHHHHHh
Confidence 468999999999999999886 778999999999998 5566676654
No 150
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.24 E-value=9.2e-06 Score=77.36 Aligned_cols=46 Identities=26% Similarity=0.416 Sum_probs=37.4
Q ss_pred CCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 36 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
+.+|||++||+|..|+.++. .++.+|++.|.|+..+ +.++.|+..|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av-----~~a~~N~~~N 104 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAV-----ELIKKNLELN 104 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHH-----HHHHHHHHHh
Confidence 46899999999999998875 4667899999999998 4455666554
No 151
>PRK01581 speE spermidine synthase; Validated
Probab=98.24 E-value=1.2e-05 Score=75.74 Aligned_cols=40 Identities=30% Similarity=0.199 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~ 74 (269)
..++||+||||+|.....+.+.+ ..+|++.|++++|++.+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelA 190 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMA 190 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Confidence 45799999999998766666553 47999999999999664
No 152
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.24 E-value=5.8e-06 Score=75.75 Aligned_cols=128 Identities=27% Similarity=0.310 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+|++||+|-|=||..|+.|+..||.+|+..|.+...|+. .+.|+.+|. + ....++|..
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~-----a~~N~~lNg----------~------~~~~~~~~~ 180 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEW-----AKENAALNG----------L------DLDRHRFIQ 180 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHH-----HHHHHHHTT-----------------CCTCEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH-----HHHHHHHcC----------C------CccceEEEe
Confidence 4789999999999999999999999999999999999844 455555441 0 012455544
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
.|.-.. |.+. ...++||+||
T Consensus 181 ~Dvf~~--------------------------------------------------------l~~~----~~~~~fD~II 200 (286)
T PF10672_consen 181 GDVFKF--------------------------------------------------------LKRL----KKGGRFDLII 200 (286)
T ss_dssp S-HHHH--------------------------------------------------------HHHH----HHTT-EEEEE
T ss_pred cCHHHH--------------------------------------------------------HHHH----hcCCCCCEEE
Confidence 442210 1111 1234899988
Q ss_pred Eeccc-cc------cCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcC
Q 024311 194 LTEIP-YS------VTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEG 248 (269)
Q Consensus 194 asD~i-Y~------~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g 248 (269)
. |.. |. ...+..|+..+-++|+ |+|.++.++..+.+ +.+.|++.+.+.+
T Consensus 201 l-DPPsF~k~~~~~~~~y~~L~~~a~~ll~-~gG~l~~~scs~~i----~~~~l~~~~~~~a 256 (286)
T PF10672_consen 201 L-DPPSFAKSKFDLERDYKKLLRRAMKLLK-PGGLLLTCSCSHHI----SPDFLLEAVAEAA 256 (286)
T ss_dssp E---SSEESSTCEHHHHHHHHHHHHHHTEE-EEEEEEEEE--TTS-----HHHHHHHHHHHH
T ss_pred E-CCCCCCCCHHHHHHHHHHHHHHHHHhcC-CCCEEEEEcCCccc----CHHHHHHHHHHhC
Confidence 6 221 11 2345667777777888 89999888877665 4567888888765
No 153
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.24 E-value=9.6e-06 Score=72.67 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=74.9
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHH-cC------CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCC
Q 024311 33 SFRGKRVLELSCGYGLPGIFACL-KG------AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTL 105 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~-~g------a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~ 105 (269)
...+.+|||++||||-..+-... .+ .++|++.|+||++|.-..+.-.+ .++.+
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~---------------~~l~~----- 157 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK---------------RPLKA----- 157 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh---------------cCCCc-----
Confidence 34679999999999977754433 12 26899999999998432111100 11211
Q ss_pred CCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccC
Q 024311 106 APSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQG 185 (269)
Q Consensus 106 ~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~ 185 (269)
...+.+.++|-+++| ..
T Consensus 158 ~~~~~w~~~dAE~Lp---------------------------------------------------------------Fd 174 (296)
T KOG1540|consen 158 SSRVEWVEGDAEDLP---------------------------------------------------------------FD 174 (296)
T ss_pred CCceEEEeCCcccCC---------------------------------------------------------------CC
Confidence 123566666666543 24
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEE
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYL 224 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~v 224 (269)
+..||....+=-|=+..+.+..++...|.|| |+|+++.
T Consensus 175 d~s~D~yTiafGIRN~th~~k~l~EAYRVLK-pGGrf~c 212 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHIQKALREAYRVLK-PGGRFSC 212 (296)
T ss_pred CCcceeEEEecceecCCCHHHHHHHHHHhcC-CCcEEEE
Confidence 5589999888889999999999999999999 8888764
No 154
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.21 E-value=2.4e-05 Score=70.96 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~ 74 (269)
+.++||+||||+|.....++... ..+|++.|+++++++.+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a 112 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELS 112 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHH
Confidence 45699999999998776665554 57899999999998543
No 155
>PLN02476 O-methyltransferase
Probab=98.19 E-value=5.7e-05 Score=68.97 Aligned_cols=137 Identities=14% Similarity=0.198 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
.+.++|||+|+|+|..++.+|.. + ..+|+..|.+++..+. .+.|+..+ .+..++++
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~-----Ar~n~~~a-----------------Gl~~~I~l 174 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEV-----AKRYYELA-----------------GVSHKVNV 174 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHc-----------------CCCCcEEE
Confidence 36789999999999999988763 2 2479999999988743 44555432 12245666
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|..+. +..+ ......++||+
T Consensus 175 i~GdA~e~---L~~l------------------------------------------------------~~~~~~~~FD~ 197 (278)
T PLN02476 175 KHGLAAES---LKSM------------------------------------------------------IQNGEGSSYDF 197 (278)
T ss_pred EEcCHHHH---HHHH------------------------------------------------------HhcccCCCCCE
Confidence 66653321 0000 00012358999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc-C---------cchHHHHHHhhhcCceeEEE
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF-N---------NAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~-~---------~~~~~F~~~~~~~g~~~~~~ 254 (269)
|+- |.- ...+...++.+.++|+ |+|++++- ...+.|. . -++.+|.+.+.+..-+.+.+
T Consensus 198 VFI-Da~--K~~Y~~y~e~~l~lL~-~GGvIV~D-NvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~l 265 (278)
T PLN02476 198 AFV-DAD--KRMYQDYFELLLQLVR-VGGVIVMD-NVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISM 265 (278)
T ss_pred EEE-CCC--HHHHHHHHHHHHHhcC-CCcEEEEe-cCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEE
Confidence 997 542 4667888888888998 88886653 2233331 0 13689999888766555544
No 156
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.12 E-value=2.5e-05 Score=70.24 Aligned_cols=63 Identities=24% Similarity=0.353 Sum_probs=48.6
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE---cccccccCc-------------------chHHHHHH
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT---KKNYVGFNN-------------------AARHLRSL 243 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~---k~~~fg~~~-------------------~~~~F~~~ 243 (269)
+.+||+|.+--++=..+..-.|++.|++.|+ |+|++++|. =+.|...++ .+..|++.
T Consensus 149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~-p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v 227 (265)
T PF05219_consen 149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALK-PNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNV 227 (265)
T ss_pred CCceEEEeehhhhhccCCHHHHHHHHHHHhC-CCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHH
Confidence 3589999999999999999999999999999 799998882 122222221 35677788
Q ss_pred hhhcCc
Q 024311 244 VDEEGI 249 (269)
Q Consensus 244 ~~~~g~ 249 (269)
++..||
T Consensus 228 ~~p~GF 233 (265)
T PF05219_consen 228 FEPAGF 233 (265)
T ss_pred HHhcCC
Confidence 888886
No 157
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=98.10 E-value=9.6e-07 Score=79.76 Aligned_cols=54 Identities=22% Similarity=0.180 Sum_probs=43.9
Q ss_pred ccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeC
Q 024311 7 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL 66 (269)
Q Consensus 7 e~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~ 66 (269)
.+|+.+|++++.|.+++.+++ ..+.+++|.++|||+++..+++++.+ .++.+..
T Consensus 66 ~tg~~~w~~al~L~~~l~~~~----d~~~~~~v~~l~~gi~~~~~~~a~~~--~~v~~~~ 119 (262)
T KOG2497|consen 66 RTGLSVWESALSLEADLRDKP----DLSSELTVEELGCDIALKHVLAARVP--DCVVTLD 119 (262)
T ss_pred HhccccchHHHHHHHHHhhCc----ccccccchHhhccCHHHHHHHHHhcc--cceecCC
Confidence 479999999999999999874 33789999999999999997777765 3444444
No 158
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.08 E-value=0.00013 Score=64.43 Aligned_cols=134 Identities=17% Similarity=0.262 Sum_probs=88.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
..++|||+|.+.|..+|.+|. +. ..+++.+|+|++.. ...+.|+.... ..+++..+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~-----~~A~~n~~~ag-----------------~~~~i~~~ 116 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERA-----EIARENLAEAG-----------------VDDRIELL 116 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHH-----HHHHHHHHHcC-----------------CcceEEEE
Confidence 678999999999999988765 22 34899999999988 55677775431 23345554
Q ss_pred c-CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 113 A-GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 113 ~-~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
. +|+-+.- +. ...++||+
T Consensus 117 ~~gdal~~l------------------------------------------------------------~~-~~~~~fDl 135 (219)
T COG4122 117 LGGDALDVL------------------------------------------------------------SR-LLDGSFDL 135 (219)
T ss_pred ecCcHHHHH------------------------------------------------------------Hh-ccCCCccE
Confidence 4 3433210 00 24579999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccc------------cCcchHHHHHHhhhcCceeEEEEe
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG------------FNNAARHLRSLVDEEGIFGAHLIK 256 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg------------~~~~~~~F~~~~~~~g~~~~~~~~ 256 (269)
|+- |. +...++..++.+-++|+ |+|++++-.-.. -| ...+++.|.+.+.+.--+.+.++.
T Consensus 136 iFI-Da--dK~~yp~~le~~~~lLr-~GGliv~DNvl~-~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP 207 (219)
T COG4122 136 VFI-DA--DKADYPEYLERALPLLR-PGGLIVADNVLF-GGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLP 207 (219)
T ss_pred EEE-eC--ChhhCHHHHHHHHHHhC-CCcEEEEeeccc-CCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEe
Confidence 996 42 46677888888888898 888887643221 11 111368888888876544555544
No 159
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=0.0002 Score=64.24 Aligned_cols=131 Identities=22% Similarity=0.288 Sum_probs=87.7
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHH-cCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACL-KGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 110 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~-~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (269)
...|.+|||.|.|+|.++.++|+ .|+ .+|+.-|+.++.++ -.+.|+.... +..+|.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k-----~A~~Nl~~~~-----------------l~d~v~ 149 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAK-----TARENLSEFG-----------------LGDRVT 149 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHH-----HHHHHHHHhc-----------------cccceE
Confidence 56899999999999999988875 333 68999999998874 4455554320 112233
Q ss_pred eecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 024311 111 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 190 (269)
Q Consensus 111 ~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fD 190 (269)
+..+|-.+ ......||
T Consensus 150 ~~~~Dv~~----------------------------------------------------------------~~~~~~vD 165 (256)
T COG2519 150 LKLGDVRE----------------------------------------------------------------GIDEEDVD 165 (256)
T ss_pred EEeccccc----------------------------------------------------------------cccccccC
Confidence 32222111 01233899
Q ss_pred EEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEEEeeecCc
Q 024311 191 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDR 261 (269)
Q Consensus 191 lIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~~~~~~~~ 261 (269)
.|+. | .......++.++.+|+ |+|++.+-++-. ..+++-.+.+++.||...+. +|...|
T Consensus 166 av~L-D----mp~PW~~le~~~~~Lk-pgg~~~~y~P~v-----eQv~kt~~~l~~~g~~~ie~-~E~l~R 224 (256)
T COG2519 166 AVFL-D----LPDPWNVLEHVSDALK-PGGVVVVYSPTV-----EQVEKTVEALRERGFVDIEA-VETLVR 224 (256)
T ss_pred EEEE-c----CCChHHHHHHHHHHhC-CCcEEEEEcCCH-----HHHHHHHHHHHhcCccchhh-heeeeh
Confidence 9998 4 4566778888899998 777766554433 35788888999999876666 555443
No 160
>PLN02366 spermidine synthase
Probab=98.01 E-value=6e-05 Score=69.85 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=33.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~ 74 (269)
..++||+||||.|.....+++.. ..+|++.|++++|++.+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~a 131 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVS 131 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHH
Confidence 46899999999998887777653 46899999999999654
No 161
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=7.7e-06 Score=67.58 Aligned_cols=69 Identities=19% Similarity=0.299 Sum_probs=50.3
Q ss_pred eeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 12 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 12 vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
-++..-.+|.-+...+-..-..+.|++++|||||||.+++.++..++..|++-|++|+.|+. ..+|.+.
T Consensus 25 QY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEI-----f~rNaeE 93 (185)
T KOG3420|consen 25 QYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEI-----FTRNAEE 93 (185)
T ss_pred hCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHH-----HhhchHH
Confidence 34444445544433332223468999999999999999999999999999999999999955 4556543
No 162
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.94 E-value=9.9e-06 Score=71.44 Aligned_cols=62 Identities=27% Similarity=0.285 Sum_probs=45.5
Q ss_pred CccCceeecc---HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 6 PDGFLKCWES---SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 6 ye~G~~vW~a---s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
|..|-.-|.. +-.|.+|+.+.. .-.+.+||..|||.|.=.+.+|..|. +|++.|+++..++.
T Consensus 10 w~~~~~~w~~~~~~p~L~~~~~~l~-----~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~ 74 (218)
T PF05724_consen 10 WQEGQTPWDQGEPNPALVEYLDSLA-----LKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQ 74 (218)
T ss_dssp HHTT--TT--TTSTHHHHHHHHHHT-----TSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHH
T ss_pred HhcCCCCCCCCCCCHHHHHHHHhcC-----CCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHH
Confidence 3444445554 678899988732 22567999999999999999999997 89999999988854
No 163
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00014 Score=63.52 Aligned_cols=46 Identities=26% Similarity=0.211 Sum_probs=36.7
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
...+.+|||+|||+|..+-++|+... +|+..++.+++.+ -.+.|+.
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~-----~A~~~L~ 115 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAE-----QARRNLE 115 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHH-----HHHHHHH
Confidence 44788999999999999988787755 9999999998773 3455554
No 164
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.91 E-value=0.00014 Score=66.88 Aligned_cols=39 Identities=15% Similarity=0.014 Sum_probs=33.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
..+.+|||+|||+|..+..++..+. +|++.|+++.++..
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~ 73 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAE 73 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHH
Confidence 3678999999999999988777654 89999999999843
No 165
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.89 E-value=7e-05 Score=65.67 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHH-cCC-CeEEEEeCCHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACL-KGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~-~ga-~~Vv~tD~~~~vl~~ 73 (269)
.-+|.+|||+|||+|..+-+++. .|. .+|+..|.++++.+.
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~ 112 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAER 112 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHH
Confidence 34788999999999988855554 454 369999999998844
No 166
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.86 E-value=0.00017 Score=64.03 Aligned_cols=54 Identities=20% Similarity=0.155 Sum_probs=43.2
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
...-.|++|+.... .-++.+||..|||.|.=.+.+|..|. +|++.|+++..++.
T Consensus 27 ~pnp~L~~~~~~l~-----~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~ 80 (226)
T PRK13256 27 SPNEFLVKHFSKLN-----INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLS 80 (226)
T ss_pred CCCHHHHHHHHhcC-----CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHH
Confidence 34556777775542 12578999999999999999999998 79999999998854
No 167
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.85 E-value=0.00011 Score=66.22 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.++.+|||+|||+|..++.++..+. +|++.|+++.+++.
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~ 66 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEF 66 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHH
Confidence 4678999999999999998888865 89999999998843
No 168
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.85 E-value=6.8e-05 Score=68.05 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=39.0
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 19 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 19 La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+++.+.+.. ...++.+|||+|||+|..+..++..++ +|++.|.++.+++.
T Consensus 30 i~~~i~~~l----~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~ 79 (272)
T PRK00274 30 ILDKIVDAA----GPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPI 79 (272)
T ss_pred HHHHHHHhc----CCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHH
Confidence 445555442 123678999999999999988888876 89999999998844
No 169
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.82 E-value=0.00028 Score=61.54 Aligned_cols=63 Identities=14% Similarity=0.252 Sum_probs=42.3
Q ss_pred CCCCccEEEEecccccc--CCHHHHHHHHHHhcCCCCeEEEEEEcccccc--cCcchHHHHHHhhhcC
Q 024311 185 GEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKNYVG--FNNAARHLRSLVDEEG 248 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~--~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg--~~~~~~~F~~~~~~~g 248 (269)
....||.|+++-+++-. +..+.|++...++|+ ++|.+++=..-.+-| ...+...|-..++++.
T Consensus 99 ~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~-~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd 165 (204)
T PF06080_consen 99 SPESFDAIFCINMLHISPWSAVEGLFAGAARLLK-PGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD 165 (204)
T ss_pred CCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCC-CCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC
Confidence 45699999999999865 455678999999998 788766433222222 1235566666666543
No 170
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.79 E-value=0.00018 Score=63.63 Aligned_cols=97 Identities=23% Similarity=0.186 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
..++|+|||+|.|..++.+++. ...++++.|. |++++. ... .++|++..
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~-----~~~------------------------~~rv~~~~ 149 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQ-----AKE------------------------ADRVEFVP 149 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCC-----HHH------------------------TTTEEEEE
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhc-----ccc------------------------cccccccc
Confidence 4468999999999999877654 4468999999 777732 221 13567766
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|.-+ ..+. +|+|+
T Consensus 150 gd~f~-----------------------------------------------------------------~~P~-~D~~~ 163 (241)
T PF00891_consen 150 GDFFD-----------------------------------------------------------------PLPV-ADVYL 163 (241)
T ss_dssp S-TTT-----------------------------------------------------------------CCSS-ESEEE
T ss_pred ccHHh-----------------------------------------------------------------hhcc-cccee
Confidence 66441 1223 99999
Q ss_pred EeccccccCC--HHHHHHHHHHhcCCCC--eEEEEEEcc
Q 024311 194 LTEIPYSVTS--LKKLYLLIKKCLRPPY--GVVYLATKK 228 (269)
Q Consensus 194 asD~iY~~~~--~~~L~~~l~~~L~~p~--g~~~va~k~ 228 (269)
.+.++++... ...+++.+...|+ |+ |+++|.-..
T Consensus 164 l~~vLh~~~d~~~~~iL~~~~~al~-pg~~g~llI~e~~ 201 (241)
T PF00891_consen 164 LRHVLHDWSDEDCVKILRNAAAALK-PGKDGRLLIIEMV 201 (241)
T ss_dssp EESSGGGS-HHHHHHHHHHHHHHSE-ECTTEEEEEEEEE
T ss_pred eehhhhhcchHHHHHHHHHHHHHhC-CCCCCeEEEEeec
Confidence 9999987654 4457888888898 77 999987544
No 171
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.78 E-value=0.0014 Score=58.46 Aligned_cols=167 Identities=16% Similarity=0.194 Sum_probs=95.0
Q ss_pred CCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 5 KPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 5 ~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
.|+=|+.+++.++.=|.|+.++ ..+.|++||=|| =-=+.||++|+.+ +++|++.|+++.+++. +....
T Consensus 19 ~~DQ~~~T~eT~~~Ra~~~~~~-----gdL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~f-----I~~~a 87 (243)
T PF01861_consen 19 ELDQGYATPETTLRRAALMAER-----GDLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDF-----INRVA 87 (243)
T ss_dssp GGT---B-HHHHHHHHHHHHHT-----T-STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHH-----HHHHH
T ss_pred ccccccccHHHHHHHHHHHHhc-----CcccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHH-----HHHHH
Confidence 4677888999999999999886 467999999999 4458898888743 5799999999998854 33322
Q ss_pred HHhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCc
Q 024311 84 EQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSS 163 (269)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 163 (269)
... .+ +++.+..|...
T Consensus 88 ~~~-----------------gl--~i~~~~~DlR~--------------------------------------------- 103 (243)
T PF01861_consen 88 EEE-----------------GL--PIEAVHYDLRD--------------------------------------------- 103 (243)
T ss_dssp HHH-----------------T----EEEE---TTS---------------------------------------------
T ss_pred HHc-----------------CC--ceEEEEecccc---------------------------------------------
Confidence 211 01 13333333221
Q ss_pred ccccccccCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHH
Q 024311 164 SRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSL 243 (269)
Q Consensus 164 ~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~ 243 (269)
.+|. ...++||+++. |..|-++-+..++..--..|+.+++..|++..+..- ......++...
T Consensus 104 -----~LP~-----------~~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~-s~~~~~~~Q~~ 165 (243)
T PF01861_consen 104 -----PLPE-----------ELRGKFDVFFT-DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA-SPDKWLEVQRF 165 (243)
T ss_dssp --------T-----------TTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT---HHHHHHHHHH
T ss_pred -----cCCH-----------HHhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcC-cHHHHHHHHHH
Confidence 1110 24579999998 999988888777776666888777788887554320 01123567777
Q ss_pred hhhcCceeEEEEeeecCcceE
Q 024311 244 VDEEGIFGAHLIKEMTDRDIW 264 (269)
Q Consensus 244 ~~~~g~~~~~~~~~~~~~~i~ 264 (269)
+-+.|++...++..+..++-|
T Consensus 166 l~~~gl~i~dii~~Fn~Y~ga 186 (243)
T PF01861_consen 166 LLEMGLVITDIIPDFNRYEGA 186 (243)
T ss_dssp HHTS--EEEEEEEEEEEB---
T ss_pred HHHCCcCHHHHHhhhcccccc
Confidence 779999989998888765544
No 172
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.74 E-value=0.0012 Score=61.83 Aligned_cols=56 Identities=34% Similarity=0.335 Sum_probs=43.8
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 19 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 19 La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
||..+.... ...+|..|||==||||-.-+.|.+.|+ +|+++|++..+++ -.+.|++
T Consensus 185 lAR~mVNLa----~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~-----gak~Nl~ 240 (347)
T COG1041 185 LARAMVNLA----RVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVR-----GAKINLE 240 (347)
T ss_pred HHHHHHHHh----ccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHh-----hhhhhhh
Confidence 455554432 245788999999999988888999999 8999999999984 4566664
No 173
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.70 E-value=0.0015 Score=56.19 Aligned_cols=57 Identities=19% Similarity=0.270 Sum_probs=36.5
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCc
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~ 249 (269)
...+||+|++== ...++.+++....+++ ++|+++.--.+.+ ...+.+....++..|.
T Consensus 112 ~~~~fd~v~aRA----v~~l~~l~~~~~~~l~-~~G~~l~~KG~~~---~~El~~~~~~~~~~~~ 168 (184)
T PF02527_consen 112 YRESFDVVTARA----VAPLDKLLELARPLLK-PGGRLLAYKGPDA---EEELEEAKKAWKKLGL 168 (184)
T ss_dssp TTT-EEEEEEES----SSSHHHHHHHHGGGEE-EEEEEEEEESS-----HHHHHTHHHHHHCCCE
T ss_pred cCCCccEEEeeh----hcCHHHHHHHHHHhcC-CCCEEEEEcCCCh---HHHHHHHHhHHHHhCC
Confidence 456999999832 2457788999999998 7777654332221 2345666777777765
No 174
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.68 E-value=0.00017 Score=62.86 Aligned_cols=49 Identities=22% Similarity=0.212 Sum_probs=34.4
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
.-.|..|+|+.||.|..+|.+|+ ..+++|++.|.||..++.+ ..|+++|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L-~~Ni~lN 148 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYL-KENIRLN 148 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHH-HHHHHHT
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHH-HHHHHHc
Confidence 34688999999999999999987 3345899999999998543 3444444
No 175
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.67 E-value=0.00031 Score=62.67 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=36.2
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHH
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~ 73 (269)
..+.++.+||+||-+|.+++.+|+ .|+..|++.|+++-.++.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~ 97 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQR 97 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHH
Confidence 467899999999999999987665 788899999999987743
No 176
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.0017 Score=62.86 Aligned_cols=121 Identities=26% Similarity=0.409 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+.+||||=||.|..||.+|... ++|++++++++.+ ...+.|+..|. . .|+.|..+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV-----~~A~~NA~~n~-----------------i-~N~~f~~~ 348 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAV-----EAAQENAAANG-----------------I-DNVEFIAG 348 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHH-----HHHHHHHHHcC-----------------C-CcEEEEeC
Confidence 56799999999999999999654 5999999999998 55666665541 1 24777766
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
+-++... .| .....||.||.
T Consensus 349 ~ae~~~~-----------------------------------------------------~~-------~~~~~~d~Vvv 368 (432)
T COG2265 349 DAEEFTP-----------------------------------------------------AW-------WEGYKPDVVVV 368 (432)
T ss_pred CHHHHhh-----------------------------------------------------hc-------cccCCCCEEEE
Confidence 6544310 01 12358899987
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCc
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~ 249 (269)
|..= .-.-+.+++.|.++ + |..++||++..- ++...+..+.+.|.
T Consensus 369 -DPPR-~G~~~~~lk~l~~~-~-p~~IvYVSCNP~------TlaRDl~~L~~~gy 413 (432)
T COG2265 369 -DPPR-AGADREVLKQLAKL-K-PKRIVYVSCNPA------TLARDLAILASTGY 413 (432)
T ss_pred -CCCC-CCCCHHHHHHHHhc-C-CCcEEEEeCCHH------HHHHHHHHHHhCCe
Confidence 4332 12334677777764 4 778999998654 56677788888874
No 177
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.65 E-value=0.0013 Score=59.13 Aligned_cols=130 Identities=20% Similarity=0.237 Sum_probs=80.8
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 110 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (269)
...|.+|||-|.|+|.+++++++. +..+|+--|+.++-. ...+.|+..+. +..+|.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~-----~~A~~n~~~~g-----------------l~~~v~ 95 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRA-----EKARKNFERHG-----------------LDDNVT 95 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHH-----HHHHHHHHHTT-----------------CCTTEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHH-----HHHHHHHHHcC-----------------CCCCce
Confidence 458999999999999999887753 235899999999887 55666765431 223555
Q ss_pred eecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 024311 111 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 190 (269)
Q Consensus 111 ~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fD 190 (269)
+...|.... .| .. .....+|
T Consensus 96 ~~~~Dv~~~-------------------------g~----------------------------------~~-~~~~~~D 115 (247)
T PF08704_consen 96 VHHRDVCEE-------------------------GF----------------------------------DE-ELESDFD 115 (247)
T ss_dssp EEES-GGCG-------------------------------------------------------------ST-T-TTSEE
T ss_pred eEecceecc-------------------------cc----------------------------------cc-cccCccc
Confidence 554443210 00 00 1245899
Q ss_pred EEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEE
Q 024311 191 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 191 lIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
.|+. |+.-=...++.+ .+.|++++|++.+-.+-.. .+++.++.+++.||...++
T Consensus 116 avfL-Dlp~Pw~~i~~~----~~~L~~~gG~i~~fsP~ie-----Qv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 116 AVFL-DLPDPWEAIPHA----KRALKKPGGRICCFSPCIE-----QVQKTVEALREHGFTDIET 169 (247)
T ss_dssp EEEE-ESSSGGGGHHHH----HHHE-EEEEEEEEEESSHH-----HHHHHHHHHHHTTEEEEEE
T ss_pred EEEE-eCCCHHHHHHHH----HHHHhcCCceEEEECCCHH-----HHHHHHHHHHHCCCeeeEE
Confidence 9998 776555555444 4456337887766555443 5889999999999866555
No 178
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.61 E-value=0.00058 Score=61.38 Aligned_cols=142 Identities=15% Similarity=0.208 Sum_probs=85.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
+-++|||||+++|..++.+|.. + -.+|+..|.+++..+. .+.|+... .+..+|++.
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~-----Ar~~~~~a-----------------g~~~~I~~~ 136 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYEL-----GLPVIQKA-----------------GVAHKIDFR 136 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHH-----HHHHHHHC-----------------CCCCceEEE
Confidence 5679999999999999987753 2 2489999999987743 34444332 123567777
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.++..+. +..+. ......++||+|
T Consensus 137 ~G~a~e~---L~~l~-----------------------------------------------------~~~~~~~~fD~i 160 (247)
T PLN02589 137 EGPALPV---LDQMI-----------------------------------------------------EDGKYHGTFDFI 160 (247)
T ss_pred eccHHHH---HHHHH-----------------------------------------------------hccccCCcccEE
Confidence 6664331 00000 000123589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc----------------CcchHHHHHHhhhcCceeEEEEe
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------------NNAARHLRSLVDEEGIFGAHLIK 256 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~----------------~~~~~~F~~~~~~~g~~~~~~~~ 256 (269)
+- |.= ...+...++.+.++|+ |+|++++- ...+.|. ...+++|.+.+.+..-+.+.++
T Consensus 161 Fi-Dad--K~~Y~~y~~~~l~ll~-~GGviv~D-Nvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~ll- 234 (247)
T PLN02589 161 FV-DAD--KDNYINYHKRLIDLVK-VGGVIGYD-NTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICML- 234 (247)
T ss_pred Ee-cCC--HHHhHHHHHHHHHhcC-CCeEEEEc-CCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEE-
Confidence 97 432 5567777788788888 88886643 2222221 0125588888877655555443
Q ss_pred eecC
Q 024311 257 EMTD 260 (269)
Q Consensus 257 ~~~~ 260 (269)
.+.|
T Consensus 235 PigD 238 (247)
T PLN02589 235 PVGD 238 (247)
T ss_pred EeCC
Confidence 4444
No 179
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.61 E-value=0.0006 Score=60.17 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+..-|||+|||+||.|-++...| ..+++.|+++.||..
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~ 87 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQ 87 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHH
Confidence 57799999999999998877777 489999999999954
No 180
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.60 E-value=0.00019 Score=66.82 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCCHHH-HHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPG-IFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 35 ~~~~VLELGcGtGl~g-l~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
.+.+|||||||+|... +++++....+++++|+++..++.+ ..|+..|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A-~~Nv~~N 161 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASA-QAIISAN 161 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHH-HHHHHhc
Confidence 4679999999998665 444444334899999999999543 3455444
No 181
>PLN02823 spermine synthase
Probab=97.59 E-value=0.00048 Score=64.61 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~ 74 (269)
..++||.||+|.|.....+.+. +..+|++.|+++++++.+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~la 143 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFC 143 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHH
Confidence 4579999999999888766664 467899999999999654
No 182
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.52 E-value=0.0014 Score=55.58 Aligned_cols=56 Identities=23% Similarity=0.194 Sum_probs=44.1
Q ss_pred eeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCC--CeEEEEeCCHHHH
Q 024311 12 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETI 71 (269)
Q Consensus 12 vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga--~~Vv~tD~~~~vl 71 (269)
+=++|-.||+-+.+.+. .-+|+-|||||.|||...-+....|. ..+++.+|+++..
T Consensus 29 I~PsSs~lA~~M~s~I~----pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~ 86 (194)
T COG3963 29 ILPSSSILARKMASVID----PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFV 86 (194)
T ss_pred ecCCcHHHHHHHHhccC----cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHH
Confidence 34677788888888762 33788999999999998866655553 5799999999987
No 183
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.51 E-value=0.00016 Score=64.22 Aligned_cols=64 Identities=23% Similarity=0.341 Sum_probs=45.4
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHH-----HHhhhcCceeEEE
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLR-----SLVDEEGIFGAHL 254 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~-----~~~~~~g~~~~~~ 254 (269)
.++++|+||+|--+++.+++|.-+.-++..|+ |+|.++ |+ -|| |+++.+.. ..++..|-+++++
T Consensus 134 ~ens~DLiisSlslHW~NdLPg~m~~ck~~lK-PDg~Fi-as---mlg-gdTLyELR~slqLAelER~GGiSphi 202 (325)
T KOG2940|consen 134 KENSVDLIISSLSLHWTNDLPGSMIQCKLALK-PDGLFI-AS---MLG-GDTLYELRCSLQLAELEREGGISPHI 202 (325)
T ss_pred cccchhhhhhhhhhhhhccCchHHHHHHHhcC-CCccch-hH---Hhc-cccHHHHHHHhhHHHHHhccCCCCCc
Confidence 56799999999999999999999999999999 888765 32 122 33443332 3345566556655
No 184
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.48 E-value=0.0012 Score=60.15 Aligned_cols=44 Identities=18% Similarity=0.428 Sum_probs=34.4
Q ss_pred CCCCccEEEEeccc-c-ccCCHHHHHHHHHHhcCCCCeEEEEEEccc
Q 024311 185 GEGGYDVILLTEIP-Y-SVTSLKKLYLLIKKCLRPPYGVVYLATKKN 229 (269)
Q Consensus 185 ~~~~fDlIlasD~i-Y-~~~~~~~L~~~l~~~L~~p~g~~~va~k~~ 229 (269)
..+.||+|++=+|+ | +.+.-..++..+...|+ |+|.++++.--.
T Consensus 199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~-~gG~LflG~sE~ 244 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLK-PGGLLFLGHSET 244 (268)
T ss_pred ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC-CCCEEEEccCcc
Confidence 45689999998764 3 44556679999999998 999999985443
No 185
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.47 E-value=0.0017 Score=57.11 Aligned_cols=65 Identities=25% Similarity=0.425 Sum_probs=49.4
Q ss_pred CCCCccEEEEeccccccCCHHH---HHHHHHHhcCCCCeE-----EEEE------EcccccccCcchHHHHHHhhhcCce
Q 024311 185 GEGGYDVILLTEIPYSVTSLKK---LYLLIKKCLRPPYGV-----VYLA------TKKNYVGFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~---L~~~l~~~L~~p~g~-----~~va------~k~~~fg~~~~~~~F~~~~~~~g~~ 250 (269)
..++||+|..|=|+-...+... ++....++|+ |+|. ++|+ ...||+ ....|.+.|+..||.
T Consensus 101 ~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~-~~g~~~~~~LFlVlP~~Cv~NSRy~----~~~~l~~im~~LGf~ 175 (219)
T PF11968_consen 101 ESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLK-PPGLSLFPSLFLVLPLPCVTNSRYM----TEERLREIMESLGFT 175 (219)
T ss_pred cccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhC-CCCccCcceEEEEeCchHhhccccc----CHHHHHHHHHhCCcE
Confidence 4569999999999987776664 6666777898 6677 6665 345666 578999999999985
Q ss_pred eEEE
Q 024311 251 GAHL 254 (269)
Q Consensus 251 ~~~~ 254 (269)
..+.
T Consensus 176 ~~~~ 179 (219)
T PF11968_consen 176 RVKY 179 (219)
T ss_pred EEEE
Confidence 5444
No 186
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.46 E-value=0.00055 Score=61.33 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=33.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
.++.+|||+|||+|..+..++..+. +|++.|.++.+++
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~ 65 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAE 65 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHH
Confidence 3678999999999999988888776 7999999999883
No 187
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.43 E-value=0.00091 Score=63.06 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=35.2
Q ss_pred CEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 37 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
.+||||-||+|..|+.+|.... +|++.+.+++++ .+.+.|+..|
T Consensus 198 ~~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av-----~~A~~Na~~N 241 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAV-----EDARENAKLN 241 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHH-----HHHHHHHHHT
T ss_pred CcEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHH-----HHHHHHHHHc
Confidence 3899999999999999997754 899999999998 5566666655
No 188
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.42 E-value=0.0012 Score=59.91 Aligned_cols=69 Identities=17% Similarity=0.122 Sum_probs=47.0
Q ss_pred eccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHH-HcCCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 13 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 13 W~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa-~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
||.- .+++++.+.... ...+++..+||+|||+|..++.++ .++..+|+++|.++..+.+ +.+|++++..
T Consensus 128 pETE-E~V~~Vid~~~~-~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~L-a~eN~qr~~l 197 (328)
T KOG2904|consen 128 PETE-EWVEAVIDALNN-SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKL-AKENAQRLKL 197 (328)
T ss_pred ccHH-HHHHHHHHHHhh-hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHH-HHHHHHHHhh
Confidence 4433 344444443221 234567799999999999887644 4667799999999988855 4577776654
No 189
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.35 E-value=0.00037 Score=61.96 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+|.+|||-.-|.|..++.|+..||.+|+-..-||.||++
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeL 172 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLEL 172 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEe
Confidence 799999999999999999999999999999999999854
No 190
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.33 E-value=0.0034 Score=53.52 Aligned_cols=46 Identities=33% Similarity=0.434 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCC----------eEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAG----------TVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~----------~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.+..|||--||+|-.-+.++..+.. ++++.|+++.+++ -.+.|+..
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~-----~a~~N~~~ 83 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVR-----GARENLKA 83 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHH-----HHHHHHHH
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHH-----HHHHHHHh
Confidence 5679999999999888888765431 2789999999984 44556543
No 191
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.31 E-value=0.0061 Score=52.77 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=27.8
Q ss_pred CEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHH
Q 024311 37 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 73 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~ 73 (269)
..+||+|||.|-.-+.+|... -..+++.|.....+..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~ 56 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAK 56 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHH
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHH
Confidence 389999999998877766644 3589999999888744
No 192
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.31 E-value=0.0018 Score=57.02 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=28.0
Q ss_pred CCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHH
Q 024311 36 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAE 69 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~ 69 (269)
+++++|+|+|.|+||+.+|. ....+|++.|-+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K 102 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK 102 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch
Confidence 68999999999999988774 34457999998764
No 193
>PRK00536 speE spermidine synthase; Provisional
Probab=97.23 E-value=0.0063 Score=55.20 Aligned_cols=40 Identities=13% Similarity=-0.120 Sum_probs=34.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTT 75 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~ 75 (269)
.-++||=+|-|-|...-.+.+.. .+|++.|++++|++.|.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k 111 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFI 111 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHH
Confidence 45799999999998888888775 49999999999997763
No 194
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.22 E-value=0.01 Score=52.10 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=44.9
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCce
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~ 250 (269)
.++..|++|.+=-+-- ..+..++..-.|+|+ ++|.++||--+-+|. ....|.+.++.-||-
T Consensus 119 ~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK-~~G~L~IAEV~SRf~---~~~~F~~~~~~~GF~ 179 (219)
T PF05148_consen 119 EDESVDVAVFCLSLMG-TNWPDFIREANRVLK-PGGILKIAEVKSRFE---NVKQFIKALKKLGFK 179 (219)
T ss_dssp -TT-EEEEEEES---S-S-HHHHHHHHHHHEE-EEEEEEEEEEGGG-S----HHHHHHHHHCTTEE
T ss_pred CCCceeEEEEEhhhhC-CCcHHHHHHHHheec-cCcEEEEEEecccCc---CHHHHHHHHHHCCCe
Confidence 4568999998766654 467888888889999 999999997666663 789999999999974
No 195
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.18 E-value=0.0073 Score=55.01 Aligned_cols=60 Identities=22% Similarity=0.186 Sum_probs=39.7
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH--cCCCeEEEEeCCHHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~--~ga~~Vv~tD~~~~vl~~ 73 (269)
++.+.-+..+....+.....++.++|||+|||+|....++.. ....++++.|.++.+++.
T Consensus 12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l 73 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLEL 73 (274)
T ss_pred hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHH
Confidence 344444444444443333468889999999999965444332 245689999999998854
No 196
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.15 E-value=0.024 Score=51.68 Aligned_cols=47 Identities=21% Similarity=0.116 Sum_probs=39.2
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
.....+||==|||.|-+..-+|.+|. .|.+.+++-.|+ ...|..+|.
T Consensus 54 ~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Ml---l~s~fiLn~ 100 (270)
T PF07942_consen 54 DRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFML---LASNFILNH 100 (270)
T ss_pred CCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHH---HHHHHHHcc
Confidence 44678999999999999999999999 899999998887 236666664
No 197
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.09 E-value=0.0023 Score=57.09 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=28.7
Q ss_pred CCCCccEEEEecccc--ccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 185 GEGGYDVILLTEIPY--SVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 185 ~~~~fDlIlasD~iY--~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
..+.+|+|.+-=++= .|+-....+..+.++|+ |+|.+++-
T Consensus 141 ~~~svD~it~IFvLSAi~pek~~~a~~nl~~llK-PGG~llfr 182 (264)
T KOG2361|consen 141 EEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLK-PGGSLLFR 182 (264)
T ss_pred CcCccceEEEEEEEeccChHHHHHHHHHHHHHhC-CCcEEEEe
Confidence 567899888633332 35566678888889999 88888764
No 198
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.08 E-value=0.0035 Score=58.69 Aligned_cols=40 Identities=28% Similarity=0.171 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
++.+|||||||-|.==.=-...+.+.++++|++++.|+.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea 101 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEA 101 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHH
Confidence 7889999999988221222335678999999999988665
No 199
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.03 E-value=0.0022 Score=57.93 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=30.2
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
..++|.++||+|||.-+--++.|....++|+++||.+.-+
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~ 92 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNR 92 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhH
Confidence 3568999999999999888887777788999999987544
No 200
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.01 E-value=0.0075 Score=52.76 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCCHHHHHHH-HcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa-~~ga~~Vv~tD~~~~vl~~ 73 (269)
++...+|||||.|-+-+.+| ..+.++.++.++.+...+.
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~ 81 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDL 81 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHH
Confidence 46799999999998877655 5677789999999886644
No 201
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.00 E-value=0.0033 Score=57.76 Aligned_cols=42 Identities=17% Similarity=0.423 Sum_probs=33.6
Q ss_pred CCCccEEEEeccc--cccCCHHHHHHHHHHhcCCCCeEEEEEEcc
Q 024311 186 EGGYDVILLTEIP--YSVTSLKKLYLLIKKCLRPPYGVVYLATKK 228 (269)
Q Consensus 186 ~~~fDlIlasD~i--Y~~~~~~~L~~~l~~~L~~p~g~~~va~k~ 228 (269)
.++||+|++-.++ ++++....+++.+.+.|+ |+|.++++..-
T Consensus 221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~-pgG~L~lG~sE 264 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK-PDGLLFAGHSE 264 (287)
T ss_pred CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC-CCcEEEEeCcc
Confidence 4689999997765 344667889999999999 99998887543
No 202
>PHA01634 hypothetical protein
Probab=97.00 E-value=0.0016 Score=52.89 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=42.3
Q ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 31 QLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 31 ~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
...+++++|+++|+++|-.+|..+..||++|++...++...+.. ..|++.|
T Consensus 24 ~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~-een~k~n 74 (156)
T PHA01634 24 MLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKW-EEVCAYF 74 (156)
T ss_pred heeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHH-HHHhhhh
Confidence 46789999999999999999999999999999999998876443 3344444
No 203
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.00 E-value=0.0013 Score=57.11 Aligned_cols=43 Identities=16% Similarity=0.400 Sum_probs=28.9
Q ss_pred CCCCccEEEEecccc--ccCCHHHHHHHHHHhcCCCCeEEEEEEcc
Q 024311 185 GEGGYDVILLTEIPY--SVTSLKKLYLLIKKCLRPPYGVVYLATKK 228 (269)
Q Consensus 185 ~~~~fDlIlasD~iY--~~~~~~~L~~~l~~~L~~p~g~~~va~k~ 228 (269)
..++||+|++-.|+- +++....+++.+.+.|+ |+|.++++..-
T Consensus 133 ~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~-pgG~L~lG~sE 177 (196)
T PF01739_consen 133 PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK-PGGYLFLGHSE 177 (196)
T ss_dssp ----EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE-EEEEEEE-TT-
T ss_pred ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC-CCCEEEEecCc
Confidence 456999999988763 44556679999999998 99999988543
No 204
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.97 E-value=0.0035 Score=58.81 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=41.5
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
...|-+|+|+-||.|-.+|.+|.+|+.+|++.|+||..+..+ .+|+++|-
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L-~eNi~LN~ 235 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYL-KENIRLNK 235 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHH-HHHHHhcC
Confidence 345899999999999999999999987799999999999543 45555553
No 205
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.94 E-value=0.018 Score=54.10 Aligned_cols=36 Identities=19% Similarity=0.065 Sum_probs=31.6
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCH
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~ 68 (269)
...+|++||||||++|.-.-.+...|+ +|++.|..+
T Consensus 208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~ 243 (357)
T PRK11760 208 RLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP 243 (357)
T ss_pred ccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh
Confidence 356899999999999988888888998 999999654
No 206
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.86 E-value=0.0034 Score=52.41 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=35.4
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
.+++||+|+++.++.+..+....++.+.++|+ |+|.+++.
T Consensus 41 ~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~ 80 (160)
T PLN02232 41 DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK-PGSRVSIL 80 (160)
T ss_pred CCCCeeEEEecchhhcCCCHHHHHHHHHHHcC-cCeEEEEE
Confidence 35589999999999988899999999999999 88988765
No 207
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.81 E-value=0.0044 Score=54.61 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=47.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+|.+||++|-|.|+..-....+.+.+-+++.-+|+|+ .-++.+... ...+|-.+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~-----krmr~~gw~-------------------ek~nViil~ 155 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVL-----KRMRDWGWR-------------------EKENVIILE 155 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHH-----HHHHhcccc-------------------cccceEEEe
Confidence 58999999999999988777777777788899999999 445555432 135677778
Q ss_pred CCCCCc
Q 024311 114 GDWEEL 119 (269)
Q Consensus 114 ~dw~~~ 119 (269)
+-|++.
T Consensus 156 g~WeDv 161 (271)
T KOG1709|consen 156 GRWEDV 161 (271)
T ss_pred cchHhh
Confidence 888863
No 208
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.65 E-value=0.0092 Score=48.68 Aligned_cols=56 Identities=14% Similarity=0.037 Sum_probs=39.6
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH-----cCCCeEEEEeCCHHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-----KGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~-----~ga~~Vv~tD~~~~vl~~ 73 (269)
.+++++...........+..+|+|+|||-|.+|.+++. ....+|++.|.++..++.
T Consensus 8 ~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~ 68 (141)
T PF13679_consen 8 RMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVES 68 (141)
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHH
Confidence 35555555432211234677999999999999988776 444589999999987643
No 209
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.62 E-value=0.034 Score=50.44 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=51.4
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEE
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
.+++.|++|.+=.+- -..+..++....++|+ ++|.+|||--+-+|. ....|.+.+...||...+.
T Consensus 225 ~d~svDvaV~CLSLM-gtn~~df~kEa~RiLk-~gG~l~IAEv~SRf~---dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 225 EDESVDVAVFCLSLM-GTNLADFIKEANRILK-PGGLLYIAEVKSRFS---DVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred ccCcccEEEeeHhhh-cccHHHHHHHHHHHhc-cCceEEEEehhhhcc---cHHHHHHHHHHcCCeeeeh
Confidence 566899999866555 4567788888999999 999999997766663 4566999999999865554
No 210
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.60 E-value=0.005 Score=49.58 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=35.0
Q ss_pred EEEEEcCCCCHHHHHHHHcCCC-eEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 38 RVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 38 ~VLELGcGtGl~gl~aa~~ga~-~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|||+|||.|..++.++..+++ +|++.|.++.+. +.++.|+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~-----~~l~~~~~~ 44 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAY-----EILEENVKL 44 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHH-----HHHHHHHHH
Confidence 4899999999999988887764 899999999988 445555544
No 211
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.56 E-value=0.0062 Score=51.44 Aligned_cols=60 Identities=28% Similarity=0.318 Sum_probs=43.4
Q ss_pred CEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCCC
Q 024311 37 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDW 116 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw 116 (269)
..|||+.||.|.-.+..|+... +|++.|+++.-++ -++.|+..- ....+++|+.+||
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~-----~a~hNa~vY-----------------Gv~~~I~~i~gD~ 57 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLE-----CAKHNAEVY-----------------GVADNIDFICGDF 57 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHH-----HHHHHHHHT-----------------T-GGGEEEEES-H
T ss_pred CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHH-----HHHHHHHHc-----------------CCCCcEEEEeCCH
Confidence 3799999999999999998865 8999999998884 456666432 1235789999999
Q ss_pred CCc
Q 024311 117 EEL 119 (269)
Q Consensus 117 ~~~ 119 (269)
.+.
T Consensus 58 ~~~ 60 (163)
T PF09445_consen 58 FEL 60 (163)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 212
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.52 E-value=0.05 Score=48.77 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~ 74 (269)
+.++||-||-|.|...-.+.+.. .++|++.|+++.|++.+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a 116 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELA 116 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHH
Confidence 57899999999997776666554 47999999999999665
No 213
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.51 E-value=0.059 Score=53.34 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC---------CCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG---------AGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g---------a~~Vv~tD~~~~vl~~ 73 (269)
...+|||.+||+|...+.++... ...+++.|+++.++..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~ 78 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKR 78 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHH
Confidence 56799999999997776655321 1468999999998844
No 214
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.48 E-value=0.039 Score=56.68 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=24.3
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL 55 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~ 55 (269)
.||.-|.... .+.-.+..++|-+||+|-..|.||.
T Consensus 176 tlAaa~l~~a---~w~~~~~~l~DP~CGSGTilIEAa~ 210 (702)
T PRK11783 176 NLAAAILLRS---GWPQEGTPLLDPMCGSGTLLIEAAM 210 (702)
T ss_pred HHHHHHHHHc---CCCCCCCeEEccCCCccHHHHHHHH
Confidence 4555555432 1222578999999999998888775
No 215
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.44 E-value=0.0057 Score=52.94 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=32.1
Q ss_pred CCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
...+-|||+|+|+++++||.+ |++|++...+|..-+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~ 68 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRAR 68 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHH
Confidence 358999999999999999988 789999999998763
No 216
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.32 E-value=0.053 Score=49.72 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=32.3
Q ss_pred CEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHh
Q 024311 37 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~ 74 (269)
++||-||=|.|.+.-.+.+.. ..++++.|+++.|++.+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~a 116 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELA 116 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHH
Confidence 699999999998887777654 57999999999999664
No 217
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.22 E-value=0.042 Score=53.89 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=45.5
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
++-.|-.++.++. ..-.++.+||+-||||+.|+++|+ ++++|++..++++.+ +-.+.|...
T Consensus 367 ~aevLys~i~e~~----~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV-----~dA~~nA~~ 427 (534)
T KOG2187|consen 367 AAEVLYSTIGEWA----GLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAV-----EDAEKNAQI 427 (534)
T ss_pred HHHHHHHHHHHHh----CCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhc-----chhhhcchh
Confidence 3455666666654 233668999999999999999885 567999999999988 444555543
No 218
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.16 E-value=0.081 Score=51.90 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cC-CCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||++||.|.=+..+|. .+ ...|++.|+++.-+ .-++.|+..
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-----~~L~~nl~r 160 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-----KVLHANISR 160 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-----HHHHHHHHH
Confidence 678999999999977755443 32 34899999999877 445666643
No 219
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.96 E-value=0.1 Score=47.82 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=35.7
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH--------cCCCeEEEEeCCHHHHHHh
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--------KGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~--------~ga~~Vv~tD~~~~vl~~~ 74 (269)
..++++|.+.. ....+.+|+|-.||+|-.-+.+.. ....++++.|+++.++..+
T Consensus 32 ~~i~~l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la 93 (311)
T PF02384_consen 32 REIVDLMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALA 93 (311)
T ss_dssp HHHHHHHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHH
T ss_pred HHHHHHHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHH
Confidence 34566666654 123567899999999966655554 1345899999999988654
No 220
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.95 E-value=0.013 Score=57.27 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=36.6
Q ss_pred cCCCCccEEEEeccccccCCH-HHHHHHHHHhcCCCCeEEEEEEcccc
Q 024311 184 QGEGGYDVILLTEIPYSVTSL-KKLYLLIKKCLRPPYGVVYLATKKNY 230 (269)
Q Consensus 184 ~~~~~fDlIlasD~iY~~~~~-~~L~~~l~~~L~~p~g~~~va~k~~~ 230 (269)
.....||+|=+|.|+-..... ..++-.+.|+|+ |+|.++++....|
T Consensus 177 fp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLR-pGGyfv~S~ppv~ 223 (506)
T PF03141_consen 177 FPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLR-PGGYFVLSGPPVY 223 (506)
T ss_pred CCccchhhhhcccccccchhcccceeehhhhhhc-cCceEEecCCccc
Confidence 356799999999988665444 347778899999 9999999988776
No 221
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.91 E-value=0.19 Score=37.75 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=28.8
Q ss_pred CCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcc
Q 024311 187 GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK 228 (269)
Q Consensus 187 ~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~ 228 (269)
..||++ .+...++......++..+.+.++ |+|.+++....
T Consensus 118 ~~~d~~-~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~ 157 (257)
T COG0500 118 ASFDLV-ISLLVLHLLPPAKALRELLRVLK-PGGRLVLSDLL 157 (257)
T ss_pred CceeEE-eeeeehhcCCHHHHHHHHHHhcC-CCcEEEEEecc
Confidence 489999 55555444447788888888898 78888776544
No 222
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=95.91 E-value=0.14 Score=46.42 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
.+.+|||+|+|.|.+...++..++ +|++..+++.++
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~ 65 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLA 65 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHH
Confidence 477999999999999988888877 799999999887
No 223
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.89 E-value=0.0024 Score=56.01 Aligned_cols=64 Identities=23% Similarity=0.219 Sum_probs=47.1
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE---cccccc--c------------------CcchHHHHH
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT---KKNYVG--F------------------NNAARHLRS 242 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~---k~~~fg--~------------------~~~~~~F~~ 242 (269)
+-+||+|.+-.++=...+.-.|++-|+..|++.+|++++|- -++|.- . .+.+..|.+
T Consensus 167 ~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e 246 (288)
T KOG3987|consen 167 DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFME 246 (288)
T ss_pred CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHH
Confidence 34899999988888888888999999999996688888772 223321 1 113467888
Q ss_pred HhhhcCc
Q 024311 243 LVDEEGI 249 (269)
Q Consensus 243 ~~~~~g~ 249 (269)
.++..|+
T Consensus 247 ~lr~~g~ 253 (288)
T KOG3987|consen 247 LLRNCGY 253 (288)
T ss_pred HHHhcCc
Confidence 8888886
No 224
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.88 E-value=0.021 Score=51.02 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=45.6
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
.+++-|.+.|.+. ...++|+.|||+||-||-..-++...||++|++.|.-...|
T Consensus 62 RG~~KL~~ale~F----~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql 115 (245)
T COG1189 62 RGGLKLEKALEEF----ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQL 115 (245)
T ss_pred cHHHHHHHHHHhc----CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCcc
Confidence 4667777777765 46889999999999999999999999999999999966444
No 225
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=1.2 Score=39.06 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=43.8
Q ss_pred CccC-ceeeccHH--HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCH-HHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 6 PDGF-LKCWESSI--DLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 6 ye~G-~~vW~as~--~La~~L~~~~~~~~~~~~~~~VLELGcGtGl-~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
|+++ .+.|+.-. .-|..|.... .-..-.|.+||=|||-+|- +|=++-..|...|.+..+++.+++.
T Consensus 46 ~~~~eYR~Wnp~RSKLaAaIl~Gl~--~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~re 115 (231)
T COG1889 46 VEGEEYREWNPRRSKLAAAILKGLK--NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRE 115 (231)
T ss_pred ecCcceeeeCcchhHHHHHHHcCcc--cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHH
Confidence 6777 89998643 3333333321 1234578999999999993 3444444555589999999988754
No 226
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.69 E-value=0.33 Score=46.23 Aligned_cols=40 Identities=23% Similarity=0.196 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhh
Q 024311 36 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTT 75 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~ 75 (269)
-.+||=||-|-|+.--.+.+.. ..+|+..|.+|.|++...
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~ 330 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELAS 330 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhh
Confidence 3599999999999988887776 679999999999997653
No 227
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=95.65 E-value=0.068 Score=47.52 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=29.2
Q ss_pred CEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHH
Q 024311 37 KRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~ 73 (269)
..+||||||.|-.-+..|+..+ ..+++.+.-..++..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~ 87 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAK 87 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHH
Confidence 5899999999977777776655 468999998777743
No 228
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.62 E-value=0.13 Score=45.01 Aligned_cols=37 Identities=30% Similarity=0.262 Sum_probs=28.4
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCH
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSA 68 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~ 68 (269)
....+.+|+||||-.|-=+-+|++. ++ .+|++.|+.|
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 4456799999999999888666654 33 2499999977
No 229
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.11 Score=45.66 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHH-HcCCC--eEEEEeCCHHHHHHh
Q 024311 33 SFRGKRVLELSCGYGLPGIFAC-LKGAG--TVHFQDLSAETIRCT 74 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa-~~ga~--~Vv~tD~~~~vl~~~ 74 (269)
...|.+.||+|+|+|.++-+++ ..|+. .+++.|.-+++++..
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~S 124 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYS 124 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHH
Confidence 5589999999999997775444 44442 349999999999654
No 230
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=95.57 E-value=0.19 Score=44.31 Aligned_cols=64 Identities=23% Similarity=0.373 Sum_probs=39.4
Q ss_pred CCCccEEEEeccccccCCHH--HHHHHHHHhcCCCCeEEEEE---Ecc-c-ccc-----cCcchHHHHHHhhhcCce
Q 024311 186 EGGYDVILLTEIPYSVTSLK--KLYLLIKKCLRPPYGVVYLA---TKK-N-YVG-----FNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~--~L~~~l~~~L~~p~g~~~va---~k~-~-~fg-----~~~~~~~F~~~~~~~g~~ 250 (269)
..+||+|..-=|+=+-.+-+ .+++..+..|+ |+|++.|= +.. . .|. +..+...|.+.+++.|+-
T Consensus 120 ~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~-~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~ 195 (218)
T PF05891_consen 120 EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALK-PNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLR 195 (218)
T ss_dssp TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEE-EEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-E
T ss_pred CCcEeEEEehHhhccCCHHHHHHHHHHHHHhCc-CCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCE
Confidence 46999999877776654322 34555555687 88998873 221 1 222 123679999999999973
No 231
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.55 E-value=0.1 Score=48.27 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=28.3
Q ss_pred CCEEEEEcCCCC-HHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 36 GKRVLELSCGYG-LPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 36 ~~~VLELGcGtG-l~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
..++||+|+|.. +-.|+.++ .|- ++++||+++..++ +.+.|+..|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~-----~A~~nv~~N 149 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLE-----SARENVERN 149 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHH-----HHHHHHHHT
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHH-----HHHHHHHhc
Confidence 679999999986 44555444 565 8999999999984 445555444
No 232
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.44 E-value=0.061 Score=48.47 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
+..+++.+.+... ..++..|||+|+|+|..+-.++..+ ++|++.+.++...+
T Consensus 15 ~~~~~~~Iv~~~~----~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~ 66 (262)
T PF00398_consen 15 DPNIADKIVDALD----LSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAK 66 (262)
T ss_dssp HHHHHHHHHHHHT----CGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHH
T ss_pred CHHHHHHHHHhcC----CCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHH
Confidence 3455666666542 2278899999999999998888777 59999999998763
No 233
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.34 E-value=0.21 Score=49.51 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIR 72 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~ 72 (269)
.+..+||+|||.|-.-+..|...+ ..+++.|.....+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~ 385 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVA 385 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHH
Confidence 577999999999977777666554 57999999877663
No 234
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.73 E-value=0.23 Score=46.46 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
++..|++||||-|-=-+---..|.+.++++|+.+-.++.|
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa 156 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQA 156 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHH
Confidence 6778999999999443445567888999999988777665
No 235
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.38 E-value=2.6 Score=37.47 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=42.1
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccC-cchHHHH---HHhhhcCc
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFN-NAARHLR---SLVDEEGI 249 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~-~~~~~F~---~~~~~~g~ 249 (269)
-+..|+|++ |+- .|+..+.++.-.+.+|+ ++|.++++.|.+-..+. ..-.-|- +.+++.|+
T Consensus 141 v~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk-~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~ 205 (229)
T PF01269_consen 141 VEMVDVIFQ-DVA-QPDQARIAALNARHFLK-PGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGF 205 (229)
T ss_dssp S--EEEEEE-E-S-STTHHHHHHHHHHHHEE-EEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTC
T ss_pred cccccEEEe-cCC-ChHHHHHHHHHHHhhcc-CCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCC
Confidence 448999998 887 57888889999999999 89999999888765432 2334454 44555565
No 236
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.38 E-value=0.94 Score=42.29 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=38.0
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.....+||==|||+|-++.-++..|. ++=+...+-.|+ ...+..+|...
T Consensus 148 ~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Ml---i~S~FiLN~~~ 196 (369)
T KOG2798|consen 148 ERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFML---ICSSFILNYCK 196 (369)
T ss_pred cccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHH---HHHHHHHHhhc
Confidence 34567999999999999998998888 566667766666 34788888754
No 237
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.36 E-value=0.98 Score=43.14 Aligned_cols=46 Identities=26% Similarity=0.282 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCC----------------------------------------eEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAG----------------------------------------TVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~----------------------------------------~Vv~tD~~~~vl~~~ 74 (269)
.+...+|-=||+|-.-|.||+.++. .+++.|+++.+++
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~-- 268 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE-- 268 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH--
Confidence 4468999999999999999987641 3779999999994
Q ss_pred hHHHHHHHHHH
Q 024311 75 TVPNVLANLEQ 85 (269)
Q Consensus 75 ~~~Nl~~N~~~ 85 (269)
-.+.|...
T Consensus 269 ---~Ak~NA~~ 276 (381)
T COG0116 269 ---GAKANARA 276 (381)
T ss_pred ---HHHHHHHh
Confidence 45666654
No 238
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=93.98 E-value=0.063 Score=51.97 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=32.3
Q ss_pred CCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
...||++|.||||+++.|++.|+..|++...-..|.+.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~ 104 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDL 104 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHH
Confidence 34789999999999999999999999999876556543
No 239
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=93.62 E-value=0.13 Score=43.22 Aligned_cols=52 Identities=23% Similarity=0.204 Sum_probs=36.4
Q ss_pred cHHHHHHHHhhhhhcCCCCC-CCCEEEEEcCCCCHHHHHHHHcC--CCeEEEEeCCHH
Q 024311 15 SSIDLVNVLKHEIRDGQLSF-RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAE 69 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~-~~~~VLELGcGtGl~gl~aa~~g--a~~Vv~tD~~~~ 69 (269)
|+.-|.+-+.... -... .+.+||||||++|--+-++...+ +.+|++.|..+.
T Consensus 5 a~~KL~ei~~~~~---~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 5 AAFKLYEIDEKFK---IFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHHHHHTTS---SS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHHHCC---CCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 4555666665541 0222 45899999999998888887777 569999999763
No 240
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=93.56 E-value=0.11 Score=47.49 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=49.4
Q ss_pred CCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHH
Q 024311 5 KPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIR 72 (269)
Q Consensus 5 ~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~ 72 (269)
.|+-||.+=++++.=+.++.+. .++.|+.|+=+| ---|.||++++.| +++|...|+++-+++
T Consensus 127 ~yDQgfvTpEttv~Rv~lm~~R-----GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~ 189 (354)
T COG1568 127 QYDQGFVTPETTVSRVALMYSR-----GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIK 189 (354)
T ss_pred hcccccccccceeeeeeeeccc-----cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHH
Confidence 4777777777777666666654 467999999999 7789999999876 579999999987763
No 241
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.15 E-value=1.6 Score=39.00 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=31.7
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~ 73 (269)
.++.+++||||.=||...|+.|+. .-.+|+..|+|++..+.
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~ 113 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEI 113 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHH
Confidence 457899999999999888776653 12489999999987643
No 242
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=93.13 E-value=0.42 Score=45.41 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=34.4
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEE
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYL 224 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~v 224 (269)
.+..||.+-+-|.+-+......+++.+.+.++ |+|+...
T Consensus 175 edn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~k-pGG~~i~ 213 (364)
T KOG1269|consen 175 EDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLK-PGGLFIV 213 (364)
T ss_pred CccccCcEEEEeecccCCcHHHHHHHHhcccC-CCceEEe
Confidence 56799999999999999999999999999988 8886553
No 243
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=92.25 E-value=1.2 Score=41.53 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCCHH-HHHHH-H--c-CCCeEEEEeCCHHHHH
Q 024311 35 RGKRVLELSCGYGLP-GIFAC-L--K-GAGTVHFQDLSAETIR 72 (269)
Q Consensus 35 ~~~~VLELGcGtGl~-gl~aa-~--~-ga~~Vv~tD~~~~vl~ 72 (269)
++..++|||||.|-= .+++. . . ...+.+..|++.+.|+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~ 118 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQ 118 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHH
Confidence 566899999999943 33322 1 1 1237999999999884
No 244
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=92.22 E-value=0.52 Score=43.13 Aligned_cols=39 Identities=18% Similarity=0.109 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
.-.+-.|||+|-|||.+...+...|+ +|++.+.++.++.
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmva 94 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVA 94 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHH
Confidence 33566999999999999988888876 8999999998873
No 245
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=92.21 E-value=0.58 Score=40.90 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=34.0
Q ss_pred EEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 39 VLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 39 VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
|.|+||--|.+++.+...|. .+|+++|+++.-+ .+.+.|+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL-----~~A~~~i~~ 43 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPL-----EKAKENIAK 43 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHH-----HHHHHHHHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHH-----HHHHHHHHH
Confidence 68999999999999998875 5799999999988 455666644
No 246
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.21 E-value=0.24 Score=46.25 Aligned_cols=40 Identities=33% Similarity=0.408 Sum_probs=33.3
Q ss_pred CCCCEEEEEcCCC-CHHHHHHHH-cCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGt-Gl~gl~aa~-~ga~~Vv~tD~~~~vl~~ 73 (269)
-.|.+||=+|||+ |+..+++|+ .||++|+++|..+.-|+.
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~ 209 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLEL 209 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHH
Confidence 3788999999996 888866654 799999999999877644
No 247
>PRK10742 putative methyltransferase; Provisional
Probab=92.16 E-value=0.45 Score=42.88 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=31.1
Q ss_pred EEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 38 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 38 ~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
+|||+=||+|.-|+.++..|+ +|++.+.++.+.
T Consensus 91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~va 123 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVA 123 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHH
Confidence 899999999999999999999 599999999776
No 248
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=91.87 E-value=5 Score=37.19 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=26.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHH---cCCCeEEEEeCCHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL---KGAGTVHFQDLSAETI 71 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~---~ga~~Vv~tD~~~~vl 71 (269)
+..+|||+-||.|--=+-+.. ..+.+|.+-||++.-+
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv 174 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINV 174 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHH
Confidence 456999999999944333222 2246899999998544
No 249
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=91.54 E-value=2.6 Score=37.00 Aligned_cols=131 Identities=17% Similarity=0.151 Sum_probs=66.1
Q ss_pred CceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHH----Hc-CCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 9 FLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC----LK-GAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 9 G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa----~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
|..++..-.+++.|-.-. ..++...|+|+|.=.|-..+..| .. +..+|+..|++-.-.
T Consensus 11 G~pi~q~P~Dm~~~qeli-----~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~------------ 73 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELI-----WELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH------------ 73 (206)
T ss_dssp TEEESS-HHHHHHHHHHH-----HHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT-------------
T ss_pred CeehhcCHHHHHHHHHHH-----HHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh------------
Confidence 667777888887765432 23467799999999986665433 23 446999999953211
Q ss_pred HHhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCc
Q 024311 84 EQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSS 163 (269)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 163 (269)
++...+.+ .+.+++++++||..+...+-+. .
T Consensus 74 --~~~a~e~h----------p~~~rI~~i~Gds~d~~~~~~v-~------------------------------------ 104 (206)
T PF04989_consen 74 --NRKAIESH----------PMSPRITFIQGDSIDPEIVDQV-R------------------------------------ 104 (206)
T ss_dssp ---S-GGGG--------------TTEEEEES-SSSTHHHHTS-G------------------------------------
T ss_pred --chHHHhhc----------cccCceEEEECCCCCHHHHHHH-H------------------------------------
Confidence 11111111 0236889999987765432110 0
Q ss_pred ccccccccCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 164 SRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 164 ~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
.+ ....+..+||- |.=+..++.-.-++....+++ +++.+.|.
T Consensus 105 -----~~-------------~~~~~~vlVil-Ds~H~~~hvl~eL~~y~plv~-~G~Y~IVe 146 (206)
T PF04989_consen 105 -----EL-------------ASPPHPVLVIL-DSSHTHEHVLAELEAYAPLVS-PGSYLIVE 146 (206)
T ss_dssp -----SS-----------------SSEEEEE-SS----SSHHHHHHHHHHT---TT-EEEET
T ss_pred -----Hh-------------hccCCceEEEE-CCCccHHHHHHHHHHhCccCC-CCCEEEEE
Confidence 00 12235556665 877777888888888888888 77776653
No 250
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=91.08 E-value=0.81 Score=42.31 Aligned_cols=40 Identities=13% Similarity=0.007 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC--CCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g--a~~Vv~tD~~~~vl~~~ 74 (269)
.|..+||.+||.|--+..++... ..+|++.|.++++++.+
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~a 60 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAA 60 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHH
Confidence 56799999999998887777653 25899999999999553
No 251
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=90.73 E-value=0.51 Score=42.87 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=34.4
Q ss_pred EEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 38 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 38 ~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
+|+||-||+|..++.+...|.+.|++.|+++..+ ...+.|.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~-----~~~~~N~ 42 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAA-----ETYEANF 42 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHH-----HHHHHhC
Confidence 6999999999888888888988889999999887 4455554
No 252
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=90.21 E-value=4.7 Score=36.93 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=23.9
Q ss_pred CCEEEEEcCCC-CHHHHHHHHc-CC-CeEEEEeCCHHHHHH
Q 024311 36 GKRVLELSCGY-GLPGIFACLK-GA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 36 ~~~VLELGcGt-Gl~gl~aa~~-ga-~~Vv~tD~~~~vl~~ 73 (269)
.++|+=||||. -+.+|.++.. +. ..|+..|++++.++.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~ 161 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANEL 161 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHH
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHH
Confidence 45999999995 7888887754 32 268999999998754
No 253
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=90.17 E-value=0.89 Score=38.69 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=40.0
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+=...|+++|.... .-+|..|||--||+|-++++|..+|. +.++.|++++-.+.
T Consensus 175 ~kP~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~ 228 (231)
T PF01555_consen 175 QKPVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEI 228 (231)
T ss_dssp -S-HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHH
T ss_pred cCCHHHHHHHHHhh-----hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence 33467777777653 34688999999999999999999987 89999999987744
No 254
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=89.92 E-value=0.15 Score=38.95 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=20.9
Q ss_pred CCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEE
Q 024311 187 GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYL 224 (269)
Q Consensus 187 ~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~v 224 (269)
.+||+|+- |--+..+....-++.+...|+ |+|++++
T Consensus 68 ~~~dli~i-Dg~H~~~~~~~dl~~~~~~l~-~ggviv~ 103 (106)
T PF13578_consen 68 GPIDLIFI-DGDHSYEAVLRDLENALPRLA-PGGVIVF 103 (106)
T ss_dssp --EEEEEE-ES---HHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred CCEEEEEE-CCCCCHHHHHHHHHHHHHHcC-CCeEEEE
Confidence 58999987 665544445555555666677 7887764
No 255
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=89.90 E-value=4.5 Score=38.27 Aligned_cols=46 Identities=28% Similarity=0.330 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCCCHHHHH-HHHcC--CCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIF-ACLKG--AGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~-aa~~g--a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||+.|+.|-=... |+... ...|++.|.++.=+ .-+..|+..
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-----~~l~~nl~R 204 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-----KRLRENLKR 204 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-----HHHHHHHHH
Confidence 678999999999854433 33322 23579999999876 456666643
No 256
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=88.83 E-value=10 Score=34.85 Aligned_cols=37 Identities=19% Similarity=0.095 Sum_probs=29.4
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcC--CCeEEEEeCCHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAE 69 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~g--a~~Vv~tD~~~~ 69 (269)
...|.+|||-|.|+|-++.+.++.- -.+++--|+.+.
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~ 141 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHET 141 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHH
Confidence 3478899999999999998877642 258998999664
No 257
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=88.55 E-value=0.8 Score=43.74 Aligned_cols=47 Identities=30% Similarity=0.358 Sum_probs=35.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
++.+|||.=||||+=||-.++- +..+|++.|+|++.+ +-++.|+..|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~-----~~i~~N~~~N 97 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAV-----ELIKRNLELN 97 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHH-----HHHHHHHHHC
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHH-----HHHHHhHhhc
Confidence 3469999999999999887764 668999999999988 4456666554
No 258
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=88.06 E-value=2.1 Score=41.99 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=31.8
Q ss_pred CEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 37 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
.++|.||||.--...-.-.-|...|+.+|+++-++...
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m 87 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAM 87 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHH
Confidence 49999999999777777777888999999999877443
No 259
>PRK11524 putative methyltransferase; Provisional
Probab=87.49 E-value=2.2 Score=38.86 Aligned_cols=52 Identities=21% Similarity=0.132 Sum_probs=42.5
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
+.|.+.|... ....|-.|||--||+|-++++|.++|- +.++.|++++-.+.+
T Consensus 195 ~~L~erlI~~-----~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a 246 (284)
T PRK11524 195 EALLKRIILA-----SSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMG 246 (284)
T ss_pred HHHHHHHHHH-----hCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHH
Confidence 5566666554 345788999999999999999999987 899999999887654
No 260
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.38 E-value=2.9 Score=37.64 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=33.9
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCH--HHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGL--PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl--~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
.|++.|.+.. ++..-++.++||+|-|.-- |=|-.-.+|- +.++||+++..++.+ ..++..|
T Consensus 63 ~laDLL~s~~--g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA-~~ii~~N 125 (292)
T COG3129 63 HLADLLASTS--GQIPGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSA-KAIISAN 125 (292)
T ss_pred HHHHHHHhcC--CCCCcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHH-HHHHHcC
Confidence 3444444432 2223355677888776541 1111223566 799999999988543 3455544
No 261
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=87.06 E-value=1.1 Score=42.50 Aligned_cols=46 Identities=30% Similarity=0.401 Sum_probs=38.4
Q ss_pred CCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
.++|+|-=||||+=||-.+.- +..+|++.|+||+..+.. ..|+++|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Aveli-k~Nv~~N 99 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELI-KENVRLN 99 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHH-HHHHHhc
Confidence 789999999999999987764 444899999999999654 5777777
No 262
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=87.03 E-value=1.3 Score=35.04 Aligned_cols=49 Identities=20% Similarity=0.145 Sum_probs=30.7
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeC
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL 66 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~ 66 (269)
+.+|.||...-+.....-+...-.|||||.|++--++.+-|. +=.+.|.
T Consensus 40 laIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~ 88 (112)
T PF07757_consen 40 LAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDA 88 (112)
T ss_pred HHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Ccccccc
Confidence 345666655432211122345799999999999977777776 4455554
No 263
>PRK13699 putative methylase; Provisional
Probab=86.17 E-value=3.5 Score=36.43 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=45.3
Q ss_pred cCCCCccEEEEecccccc----------------CCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhc
Q 024311 184 QGEGGYDVILLTEIPYSV----------------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEE 247 (269)
Q Consensus 184 ~~~~~fDlIlasD~iY~~----------------~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~ 247 (269)
..++++|+||. |..|.. +.+...+..+.++|+ |+|.+++.+..+ ....|...+++.
T Consensus 16 lpd~SVDLIiT-DPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLK-pgg~l~if~~~~------~~~~~~~al~~~ 87 (227)
T PRK13699 16 FPDNAVDFILT-DPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLK-KDALMVSFYGWN------RVDRFMAAWKNA 87 (227)
T ss_pred CCccccceEEe-CCCcccccccCCCcccccccHHHHHHHHHHHHHHHcC-CCCEEEEEeccc------cHHHHHHHHHHC
Confidence 35678999998 888852 113456677788999 788777643322 245688889999
Q ss_pred Cc-eeEEEEeee
Q 024311 248 GI-FGAHLIKEM 258 (269)
Q Consensus 248 g~-~~~~~~~~~ 258 (269)
|| +.-.++|.-
T Consensus 88 GF~l~~~IiW~K 99 (227)
T PRK13699 88 GFSVVGHLVFTK 99 (227)
T ss_pred CCEEeeEEEEEC
Confidence 97 445566753
No 264
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=85.52 E-value=1.8 Score=39.12 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=34.2
Q ss_pred EEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 38 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 38 ~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
+|+||-||+|..++.+...|..-|.+.|+++... ...+.|.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~-----~~y~~N~ 42 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDAC-----ETYKANF 42 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHH-----HHHHHHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHH-----Hhhhhcc
Confidence 7999999999999988889987899999999876 5556665
No 265
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=85.09 E-value=1.5 Score=38.75 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=34.3
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.|+++|...+.. . ...+++|+=||+|.+++.+... ..+|++.|+++.+...
T Consensus 7 ~l~~~I~~~ip~---~-~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~ 57 (260)
T PF02086_consen 7 KLAKWIIELIPK---N-KHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINF 57 (260)
T ss_dssp GGHHHHHHHS-S-----S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHH
T ss_pred HHHHHHHHHcCC---C-CCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHH
Confidence 366777776521 1 6789999999999888877654 4589999999988754
No 266
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=84.04 E-value=1.3 Score=41.22 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=50.8
Q ss_pred ceeeccHHHHHHHH--hhhhhcCCCCCCCCEEEEEcCCCCHHHH-HHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 10 LKCWESSIDLVNVL--KHEIRDGQLSFRGKRVLELSCGYGLPGI-FACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 10 ~~vW~as~~La~~L--~~~~~~~~~~~~~~~VLELGcGtGl~gl-~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
..+|++...|=.+= .+..+-.+....+..|.||=||.|...+ .+-.+||+.|++.|.||..+ +.+++|+..|
T Consensus 167 ~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~sv-----EaLrR~~~~N 241 (351)
T KOG1227|consen 167 TQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSV-----EALRRNAEAN 241 (351)
T ss_pred EEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHH-----HHHHHHHHhc
Confidence 45788777765532 1111223445677899999999998887 77788999999999999998 4445554443
No 267
>PRK13699 putative methylase; Provisional
Probab=83.73 E-value=4.6 Score=35.66 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=39.9
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
..|.+.+... ..-+|..|||--||+|-.+++|.+.|. +.++.|++++-.+.
T Consensus 150 ~~l~~~~i~~-----~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~ 200 (227)
T PRK13699 150 VTSLQPLIES-----FTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRA 200 (227)
T ss_pred HHHHHHHHHH-----hCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHH
Confidence 3455555443 233788999999999999999999887 89999999987754
No 268
>PRK11524 putative methyltransferase; Provisional
Probab=83.00 E-value=4.3 Score=36.95 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=42.4
Q ss_pred CCCCccEEEEecccccc-----------------CCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhc
Q 024311 185 GEGGYDVILLTEIPYSV-----------------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEE 247 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~-----------------~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~ 247 (269)
..++||+|++ |..|.. ..+..++..+.++|+ |+|.+||.+...+ . .++..+.+.
T Consensus 24 ~~~siDlIit-DPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK-~~G~i~i~~~~~~------~-~~~~~~~~~ 94 (284)
T PRK11524 24 PSESVDLIFA-DPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLK-KQGTMYIMNSTEN------M-PFIDLYCRK 94 (284)
T ss_pred ccCcccEEEE-CCCcccccccccccccccHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcCchh------h-hHHHHHHhc
Confidence 4568999998 777753 112457788888998 8999888654322 1 244455566
Q ss_pred Cc-eeEEEEeee
Q 024311 248 GI-FGAHLIKEM 258 (269)
Q Consensus 248 g~-~~~~~~~~~ 258 (269)
|+ +.-.++|..
T Consensus 95 ~f~~~~~iiW~k 106 (284)
T PRK11524 95 LFTIKSRIVWSY 106 (284)
T ss_pred CcceEEEEEEEe
Confidence 75 556667764
No 269
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=82.45 E-value=3.7 Score=33.27 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=29.2
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCC-HHHHHHHHcCCCeEEEEeCCHH
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYG-LPGIFACLKGAGTVHFQDLSAE 69 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtG-l~gl~aa~~ga~~Vv~tD~~~~ 69 (269)
..+|+|+..+. +..+|+|+|-|-= -.+..+...|. .|++||.++.
T Consensus 2 ~~~a~~ia~~~-------~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~ 47 (127)
T PF03686_consen 2 VDFAEYIARLN-------NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR 47 (127)
T ss_dssp HHHHHHHHHHS--------SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S
T ss_pred chHHHHHHHhC-------CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc
Confidence 46889998763 2339999999974 34455666776 8999999874
No 270
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.22 E-value=2.6 Score=39.49 Aligned_cols=39 Identities=33% Similarity=0.385 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCC-CHHHHHHH-HcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGt-Gl~gl~aa-~~ga~~Vv~tD~~~~vl~~ 73 (269)
.+.+|+=+|||+ ||+.+.++ ..|+.+|+++|.+++=+++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~ 208 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLEL 208 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHH
Confidence 444999999997 99886544 5789999999999986643
No 271
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=82.17 E-value=4.4 Score=38.63 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=27.4
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHH---hcCCCCeEEEEEE
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKK---CLRPPYGVVYLAT 226 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~---~L~~p~g~~~va~ 226 (269)
...|++|+.+|=+-....-.++...|++ ++. |+|.++|..
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~-~gg~lVivE 225 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLA-PGGHLVIVE 225 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhcc-CCCeEEEEe
Confidence 3478999988877766555555555555 455 788887774
No 272
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=80.29 E-value=4 Score=36.36 Aligned_cols=53 Identities=13% Similarity=0.040 Sum_probs=29.9
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHH--H-------cCCCeEEEEeCCHHHH
Q 024311 19 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC--L-------KGAGTVHFQDLSAETI 71 (269)
Q Consensus 19 La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa--~-------~ga~~Vv~tD~~~~vl 71 (269)
+|.|+....+.........+|+|+|+|.|.+..-+. . ....++++.+.+|.+.
T Consensus 2 ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~ 63 (252)
T PF02636_consen 2 IARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR 63 (252)
T ss_dssp HHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH
T ss_pred hHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH
Confidence 566665544322112234699999999997663222 1 1234899999998654
No 273
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=77.88 E-value=2.1 Score=40.59 Aligned_cols=51 Identities=27% Similarity=0.208 Sum_probs=39.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH--hhHHHHHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC--TTVPNVLANLEQ 85 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~--~~~~Nl~~N~~~ 85 (269)
-.|+-|.|=-.|||-.=+.||..|+ .|++||++--+++- -...|++.|+.+
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQ 259 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQ 259 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHH
Confidence 3788999999999966677888998 89999999877741 112467777654
No 274
>KOG2730 consensus Methylase [General function prediction only]
Probab=74.59 E-value=2.6 Score=37.58 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.--.|+|--||.|--.+.-|..++ .|+..|++|.=+. -.+.|++.- .++.+|.|.+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa-----~AkhNaeiY-----------------GI~~rItFI~G 150 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIA-----CARHNAEVY-----------------GVPDRITFICG 150 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHH-----HHhccceee-----------------cCCceeEEEec
Confidence 445899999999988888788887 8999999997663 234444321 13458999999
Q ss_pred CCCCcch
Q 024311 115 DWEELPT 121 (269)
Q Consensus 115 dw~~~~~ 121 (269)
||-++-.
T Consensus 151 D~ld~~~ 157 (263)
T KOG2730|consen 151 DFLDLAS 157 (263)
T ss_pred hHHHHHH
Confidence 9987653
No 275
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=74.49 E-value=2.3 Score=41.30 Aligned_cols=47 Identities=30% Similarity=0.344 Sum_probs=38.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
.|-.|-|+-||.|-..+-|++.+. +|++.|.|+++++.+ ..|+..|.
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~L-k~ni~lNk 295 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWL-KANIKLNK 295 (495)
T ss_pred CcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHH-HHhccccc
Confidence 566899999999999999999984 999999999999543 34554443
No 276
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=71.93 E-value=7.9 Score=34.44 Aligned_cols=40 Identities=15% Similarity=0.264 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCCHHH-HHHHHcC--CCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPG-IFACLKG--AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~g-l~aa~~g--a~~Vv~tD~~~~vl~~~ 74 (269)
...++-|=.||.|.+- ++..+.+ ...|+++|+++++|++.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA 93 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELA 93 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHH
Confidence 3458999999999443 4433333 25799999999999654
No 277
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=71.34 E-value=51 Score=27.71 Aligned_cols=42 Identities=29% Similarity=0.522 Sum_probs=31.4
Q ss_pred CCCccEEEEecccccc-CCHHHHHHHHHHhcCCCCeEEEEEEccc
Q 024311 186 EGGYDVILLTEIPYSV-TSLKKLYLLIKKCLRPPYGVVYLATKKN 229 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~-~~~~~L~~~l~~~L~~p~g~~~va~k~~ 229 (269)
.++||+||+ |..|-. +.......+++.+++ +++.+++.+...
T Consensus 84 ~~~~d~vv~-DPPFl~~ec~~k~a~ti~~L~k-~~~kii~~Tg~~ 126 (162)
T PF10237_consen 84 KGKFDVVVI-DPPFLSEECLTKTAETIRLLLK-PGGKIILCTGEE 126 (162)
T ss_pred CCCceEEEE-CCCCCCHHHHHHHHHHHHHHhC-ccceEEEecHHH
Confidence 569999998 877743 444577899998877 778888777654
No 278
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.91 E-value=7.8 Score=35.88 Aligned_cols=40 Identities=18% Similarity=0.100 Sum_probs=32.0
Q ss_pred EEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 39 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 39 VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
|+||-||.|.+++-+-..|..-|.+.|+++... ...+.|.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~-----~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQ-----KTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHH-----HHHHHhC
Confidence 689999999888888888886677899998876 4455554
No 279
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=70.72 E-value=23 Score=32.25 Aligned_cols=65 Identities=25% Similarity=0.368 Sum_probs=43.0
Q ss_pred cCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHH-HcC-CCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 8 GFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC-LKG-AGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 8 ~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa-~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
|-+.+++.|-.++-++... ..|.+|||+.|+.|-=+..++ ..+ ..+|++.|+++.=+ ..+..|+.
T Consensus 65 G~~~vQd~sS~l~~~~L~~-------~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl-----~~l~~~~~ 131 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALDP-------QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRL-----KRLKENLK 131 (283)
T ss_dssp TSEEEHHHHHHHHHHHHTT-------TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHH-----HHHHHHHH
T ss_pred CcEEecccccccccccccc-------cccccccccccCCCCceeeeeecccchhHHHHhccCHHHH-----HHHHHHHH
Confidence 4455666665555555432 257789999999996664444 333 46899999999877 44555554
No 280
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=70.65 E-value=7.6 Score=38.66 Aligned_cols=40 Identities=30% Similarity=0.297 Sum_probs=32.0
Q ss_pred CCCCCEEEEEcCCC-CHHHHHHH-HcCCCeEEEEeCCHHHHHH
Q 024311 33 SFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 33 ~~~~~~VLELGcGt-Gl~gl~aa-~~ga~~Vv~tD~~~~vl~~ 73 (269)
...+.+|+=+|||. |+..+.+| .+|+ +|++.|.+++.++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~ 203 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQ 203 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 35789999999997 77776555 4788 89999999987743
No 281
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=69.02 E-value=9.6 Score=34.53 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=27.5
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHc------CCCeEEEEeCCH
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACLK------GAGTVHFQDLSA 68 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~~------ga~~Vv~tD~~~ 68 (269)
..-++..++|+|||.|.+|-.++.. +...+++.|...
T Consensus 15 ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 15 LLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 3446779999999999999655542 334799999854
No 282
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=67.41 E-value=10 Score=37.53 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=28.7
Q ss_pred CCCCccEEEEecccc---ccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 185 GEGGYDVILLTEIPY---SVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 185 ~~~~fDlIlasD~iY---~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
-+..||+|=|+.++= +.-.+..++-.++|+|+ |+|.++|=
T Consensus 424 YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILR-P~G~~iiR 466 (506)
T PF03141_consen 424 YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILR-PGGWVIIR 466 (506)
T ss_pred CCcchhheehhhhhhhhcccccHHHHHHHhHhhcC-CCceEEEe
Confidence 456899888754432 22345678888999999 89998864
No 283
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=66.80 E-value=40 Score=28.74 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=29.2
Q ss_pred CCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCH
Q 024311 36 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~ 68 (269)
|++++=+|+..=.+-..|.+.||++|+-.+||+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~ 34 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNK 34 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecc
Confidence 678999999988888888889999999999986
No 284
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.62 E-value=7.7 Score=32.64 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=33.2
Q ss_pred CEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 37 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
.+.+|||+|-|-.-+.|++.|...-++.++||-++...
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVays 111 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYS 111 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHH
Confidence 47999999999999999999987889999999877544
No 285
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=66.31 E-value=14 Score=34.31 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=35.6
Q ss_pred CCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
..+++||-||.|..++-+...|..-+.+.|+++..+ ...+.|.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~-----~ty~~n~ 45 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAV-----ATYKANF 45 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHH-----HHHHHhC
Confidence 458999999999999888888987889999999887 4445554
No 286
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=65.87 E-value=17 Score=32.22 Aligned_cols=46 Identities=13% Similarity=0.283 Sum_probs=36.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
++.++.|+||=.|.+.+.+.+.+ ++.+++.|.++.-+ .+...|+..
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl-----~~a~~~v~~ 62 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPL-----ESAIRNVKK 62 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHH-----HHHHHHHHh
Confidence 56679999999999998887765 47899999999887 444566644
No 287
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=64.69 E-value=40 Score=27.72 Aligned_cols=41 Identities=22% Similarity=0.441 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEcccccccCcc------hHHHHHHhhhcCc
Q 024311 204 LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNA------ARHLRSLVDEEGI 249 (269)
Q Consensus 204 ~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~------~~~F~~~~~~~g~ 249 (269)
+.+|-..+. +|+ |+|++.|+. |.|-.+| +.+|+..+..+.+
T Consensus 72 l~Al~~al~-lL~-~gG~i~iv~---Y~GH~gG~eE~~av~~~~~~L~~~~~ 118 (140)
T PF06962_consen 72 LKALEAALE-LLK-PGGIITIVV---YPGHPGGKEESEAVEEFLASLDQKEF 118 (140)
T ss_dssp HHHHHHHHH-HEE-EEEEEEEEE-----STCHHHHHHHHHHHHHHTS-TTTE
T ss_pred HHHHHHHHH-hhc-cCCEEEEEE---eCCCCCCHHHHHHHHHHHHhCCcceE
Confidence 333433333 677 889877663 3333333 5677777777665
No 288
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=64.08 E-value=6.9 Score=33.47 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=29.8
Q ss_pred CCCccEEEEeccccccCC----HHHHHHHHHHhcCCCCeEEEEEEcccccccC
Q 024311 186 EGGYDVILLTEIPYSVTS----LKKLYLLIKKCLRPPYGVVYLATKKNYVGFN 234 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~----~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~ 234 (269)
-.+||+||.+|+=.+.-. .+.-++.|++..+. +|-++|......||.+
T Consensus 65 L~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~-GGgLlmigG~~sfg~g 116 (177)
T PF07090_consen 65 LNRYDVVILSDVPANSLLKSRRSPNQLELLADYVRD-GGGLLMIGGPRSFGPG 116 (177)
T ss_dssp HCT-SEEEEES--HHHHHT----HHHHHHHHHHHHT-T-EEEEE-STTSSGTT
T ss_pred HhcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHh-CCEEEEEeChhhcCCC
Confidence 359999999998776542 56678888888874 5556666666666644
No 289
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=63.77 E-value=1.1e+02 Score=29.38 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=37.1
Q ss_pred ceeeccHHH-HHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 10 LKCWESSID-LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 10 ~~vW~as~~-La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
+..|+|+-. |.+++... ...+ +||=|+=.-|.+++.++..++ ...+| .-+.+..+..|+.+|
T Consensus 25 l~awdaade~ll~~~~~~------~~~~-~~~i~nd~fGal~~~l~~~~~--~~~~d--s~~~~~~~~~n~~~n 87 (378)
T PRK15001 25 LQAWEAADEYLLQQLDDT------EIRG-PVLILNDAFGALSCALAEHKP--YSIGD--SYISELATRENLRLN 87 (378)
T ss_pred ccccccHHHHHHHHHhhc------ccCC-CEEEEcCchhHHHHHHHhCCC--Ceeeh--HHHHHHHHHHHHHHc
Confidence 778998853 34444332 1223 899999999988888775554 23455 344444444454444
No 290
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=61.06 E-value=1.5e+02 Score=28.07 Aligned_cols=37 Identities=27% Similarity=0.191 Sum_probs=24.7
Q ss_pred CccEEEEeccccccCC--HHHHHHHHHHhcCCCCeEEEEE
Q 024311 188 GYDVILLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 188 ~fDlIlasD~iY~~~~--~~~L~~~l~~~L~~p~g~~~va 225 (269)
+-|+|+..=|+.+..+ +-++++.+...|. |+|.+++.
T Consensus 236 ~~daI~mkWiLhdwtDedcvkiLknC~~sL~-~~GkIiv~ 274 (342)
T KOG3178|consen 236 KGDAIWMKWILHDWTDEDCVKILKNCKKSLP-PGGKIIVV 274 (342)
T ss_pred CcCeEEEEeecccCChHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 4568888888888753 3345555555676 77777765
No 291
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=60.93 E-value=28 Score=33.20 Aligned_cols=55 Identities=16% Similarity=0.057 Sum_probs=33.8
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHH--HHHHH-------cCCCeEEEEeCCHHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPG--IFACL-------KGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~g--l~aa~-------~ga~~Vv~tD~~~~vl~~ 73 (269)
.++.|+...-.. ........++|||+|.|.+. |+... ..+.++.+...++...+.
T Consensus 61 lla~~~~~~wq~-~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~ 124 (370)
T COG1565 61 LLAEQFLQLWQE-LGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRAR 124 (370)
T ss_pred HHHHHHHHHHHH-hcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHH
Confidence 455555544321 01123458999999999766 22211 235689999999987643
No 292
>PRK10458 DNA cytosine methylase; Provisional
Probab=58.77 E-value=22 Score=35.04 Aligned_cols=44 Identities=18% Similarity=0.086 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
...+++||-||.|-.++-+-..|..-|...|+++... .....|.
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~-----~TY~~N~ 130 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAV-----RTYKANW 130 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHH-----HHHHHHc
Confidence 4569999999999888877778887788899998776 4455554
No 293
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.35 E-value=21 Score=28.67 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=30.2
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCH-HHHHHHHcCCCeEEEEeCCHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACLKGAGTVHFQDLSAE 69 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl-~gl~aa~~ga~~Vv~tD~~~~ 69 (269)
.+++|++.... +| +|.|+|.|-=+ .+-.++..|. .|++||+++.
T Consensus 3 e~a~~iAre~~------~g-kVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~ 47 (129)
T COG1255 3 EVAEYIARENA------RG-KVVEVGIGFFLDVAKRLAERGF-DVLATDINEK 47 (129)
T ss_pred cHHHHHHHHhc------CC-cEEEEccchHHHHHHHHHHcCC-cEEEEecccc
Confidence 46778876531 34 99999988642 2334556776 7999999874
No 294
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=55.68 E-value=22 Score=33.35 Aligned_cols=41 Identities=29% Similarity=0.294 Sum_probs=28.6
Q ss_pred CCCCCEEEEEcCCC-CHHHHHHH-HcCCCeEEEEeCCHHHHHH
Q 024311 33 SFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 33 ~~~~~~VLELGcGt-Gl~gl~aa-~~ga~~Vv~tD~~~~vl~~ 73 (269)
..+|.+||.+|||. |...+.+| ..|+.+|+++|.+++.++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~ 224 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEM 224 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence 34688999998865 54444444 3566579999999877643
No 295
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=55.35 E-value=8.9 Score=36.83 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=15.7
Q ss_pred CCCEEEEEcCCCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFA 53 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~a 53 (269)
+..+|+|||||+|..++.+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred cceeEEEecCCCCccHHHH
Confidence 4569999999999887654
No 296
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.10 E-value=28 Score=32.27 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCCCCCCCEEEEEcCCCCHHH---HHHHHcCCCeEEEEeCCHHHH
Q 024311 30 GQLSFRGKRVLELSCGYGLPG---IFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 30 ~~~~~~~~~VLELGcGtGl~g---l~aa~~ga~~Vv~tD~~~~vl 71 (269)
+..+++|+.||==|+|.|+-- +..|++|+ ++++.|+|.+-.
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~ 75 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGN 75 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccch
Confidence 345789999999999999644 44667888 899999998755
No 297
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=54.03 E-value=29 Score=33.61 Aligned_cols=56 Identities=14% Similarity=0.022 Sum_probs=37.2
Q ss_pred CCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCC-CHHHHH-HHHcCCCeEEEEeCCHHHH
Q 024311 5 KPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGY-GLPGIF-ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 5 ~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGt-Gl~gl~-aa~~ga~~Vv~tD~~~~vl 71 (269)
.|-+|..+|+ -+.+. .+..+.|++|+=+|||. |+.... +...|+ +|+++|.++.-+
T Consensus 181 ~~g~g~s~~~-------~i~r~---t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~ 238 (413)
T cd00401 181 LYGCRESLID-------GIKRA---TDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICA 238 (413)
T ss_pred cchhchhhHH-------HHHHh---cCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhH
Confidence 4666766663 23332 23467899999999996 544433 334688 899999987644
No 298
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=53.59 E-value=38 Score=28.49 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=25.9
Q ss_pred CCCCCEEEEEcCC-C-CH-HHHHHHHcCCCeEEEEeCCH
Q 024311 33 SFRGKRVLELSCG-Y-GL-PGIFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 33 ~~~~~~VLELGcG-t-Gl-~gl~aa~~ga~~Vv~tD~~~ 68 (269)
.+.|++||=+|+| + |. ..-.+...|+ +|++++.+.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~ 78 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT 78 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc
Confidence 5799999999999 3 65 3333445677 799999864
No 299
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=52.83 E-value=38 Score=29.75 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=38.8
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHH--HHHcCCC--eEEEEeCCH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIF--ACLKGAG--TVHFQDLSA 68 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~--aa~~ga~--~Vv~tD~~~ 68 (269)
+++.++-++..... ....+++++||=+|||..-.+++ +...|.+ +|++.|.+.
T Consensus 5 ~~v~lAG~~~al~~-~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 5 AIVTLAGLLNALKL-VGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred HHHHHHHHHHHHHH-hCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 46777777765533 22457899999999998766655 3456877 899999984
No 300
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=51.92 E-value=18 Score=33.23 Aligned_cols=50 Identities=24% Similarity=0.399 Sum_probs=38.3
Q ss_pred HHHHHHHHhhhhhc-CCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeC
Q 024311 16 SIDLVNVLKHEIRD-GQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL 66 (269)
Q Consensus 16 s~~La~~L~~~~~~-~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~ 66 (269)
-+.|..||...+.. .....+|+.+-||-+|||++|-.+-..|. .|++.|+
T Consensus 7 K~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n-~iiaNDl 57 (330)
T COG3392 7 KYKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGN-KIIANDL 57 (330)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcc-hhhhchH
Confidence 34566677654432 23567899999999999999998888876 7999987
No 301
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=51.12 E-value=63 Score=23.51 Aligned_cols=50 Identities=28% Similarity=0.248 Sum_probs=31.3
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHH--HHHcCCCeEEEEeC
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIF--ACLKGAGTVHFQDL 66 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~--aa~~ga~~Vv~tD~ 66 (269)
...+++|.+..+.....+++++++=+|+|.---+++ +...+..+|.+.|.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 4 AGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 344556655543334567899999999975433333 22344568999887
No 302
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=50.92 E-value=30 Score=33.44 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=26.6
Q ss_pred CEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHH
Q 024311 37 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAET 70 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~v 70 (269)
..|+|+|+|.|.++-+++..-...|.++|-+...
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~ 188 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRL 188 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccchHH
Confidence 4899999999999966655433489999998543
No 303
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=48.29 E-value=32 Score=31.67 Aligned_cols=39 Identities=8% Similarity=-0.083 Sum_probs=26.1
Q ss_pred CCCCEEEEEcCCC-CHHHHHHHH--cCCCeEEEEeCCHHHHH
Q 024311 34 FRGKRVLELSCGY-GLPGIFACL--KGAGTVHFQDLSAETIR 72 (269)
Q Consensus 34 ~~~~~VLELGcGt-Gl~gl~aa~--~ga~~Vv~tD~~~~vl~ 72 (269)
..|.+||=+|||. |+..+.+++ .|+.+|+++|.+++=++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~ 203 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLD 203 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHH
Confidence 3588999999863 444433333 46668999999876553
No 304
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.06 E-value=1.7e+02 Score=24.69 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=26.5
Q ss_pred CCCCEEEEEcCCCCHHHHH---HHHcCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~---aa~~ga~~Vv~tD~~~~vl 71 (269)
+++++||=.|++.|+-..+ ++..|+ +|++++.+++-+
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~ 42 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKL 42 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 4688999999976554433 234577 899999987654
No 305
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=47.83 E-value=1.3e+02 Score=27.00 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=35.4
Q ss_pred EEEecccccc-CCHHHHHHHHHHhcCC-CCeEEEEEEcccccccCcchHHHHHHhhhcCc
Q 024311 192 ILLTEIPYSV-TSLKKLYLLIKKCLRP-PYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 192 IlasD~iY~~-~~~~~L~~~l~~~L~~-p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~ 249 (269)
+|.-|--|.. +.++.++++|...+++ ++|++.|=+.... ....+.|.+.+++.|.
T Consensus 128 lVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~---~~~~~~~~~~l~~~~~ 184 (245)
T PF04378_consen 128 LVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKD---RERVDRFLRALKALGI 184 (245)
T ss_dssp EEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESS---HHHHHHHHHHHHHH-S
T ss_pred EEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeeccc---HHHHHHHHHHHHhcCC
Confidence 3444887755 6788899999988876 8888777655432 1357899999998774
No 306
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=47.70 E-value=38 Score=31.08 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=26.1
Q ss_pred CCCCEEEEEcCCCCHHHHHH---H-HcCCCeEEEEeCCHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFA---C-LKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~a---a-~~ga~~Vv~tD~~~~vl~ 72 (269)
..|.+||=.||| -.|+++ | ..|+++|+++|.+++-++
T Consensus 168 ~~g~~VlV~G~G--~vG~~aiqlak~~G~~~Vi~~~~~~~~~~ 208 (343)
T PRK09880 168 LQGKRVFVSGVG--PIGCLIVAAVKTLGAAEIVCADVSPRSLS 208 (343)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHcCCcEEEEEeCCHHHHH
Confidence 368899988874 455443 3 357778999999887553
No 307
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=47.58 E-value=1.9e+02 Score=26.85 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~ 73 (269)
.|..++|-=+|.|-=+.+++. .+..+|++.|.+++++..
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ 59 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAF 59 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHH
Confidence 567999999999977766554 333689999999999854
No 308
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=47.19 E-value=31 Score=31.18 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=25.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
..+|+|||||.==+.+-.... ....+++.|++..+++.
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~ 144 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEF 144 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHH
Confidence 569999999987655532222 22389999999998854
No 309
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=46.30 E-value=84 Score=27.96 Aligned_cols=41 Identities=29% Similarity=0.326 Sum_probs=35.8
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
....+-.|||-=+|+|..+++|.+.|- +.++.+++++.++.
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~ 259 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEV 259 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHH
Confidence 356788999999999999999999986 79999999987754
No 310
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=45.81 E-value=47 Score=30.68 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=29.3
Q ss_pred CCCCccEEEEeccccccCCHHH---HHHHHHHhcCCCCeEEEEE
Q 024311 185 GEGGYDVILLTEIPYSVTSLKK---LYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~---L~~~l~~~L~~p~g~~~va 225 (269)
....||.+|+.-++++...-.. .++.+.+.|+ |+|.++|-
T Consensus 100 ~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lr-pgg~~lvy 142 (293)
T KOG1331|consen 100 REESFDAALSIAVIHHLSTRERRERALEELLRVLR-PGGNALVY 142 (293)
T ss_pred CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhc-CCCceEEE
Confidence 4568999999999998876654 5555556677 78776554
No 311
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=45.56 E-value=2.7e+02 Score=26.39 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=26.5
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEE
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVY 223 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~ 223 (269)
-.+.|+||++=.|=-........+.+.+.++ |++++.
T Consensus 229 v~~aDlvIgaVLIpgakaPkLvt~e~vk~Mk-pGsViv 265 (371)
T COG0686 229 VKKADLVIGAVLIPGAKAPKLVTREMVKQMK-PGSVIV 265 (371)
T ss_pred hhhccEEEEEEEecCCCCceehhHHHHHhcC-CCcEEE
Confidence 4589999998877776666666777666677 665544
No 312
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.98 E-value=22 Score=33.46 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCC-CHHHHH-HHHcCCCeEEEEeCCHHHHH
Q 024311 35 RGKRVLELSCGY-GLPGIF-ACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 35 ~~~~VLELGcGt-Gl~gl~-aa~~ga~~Vv~tD~~~~vl~ 72 (269)
+|.+|-=.|.|. ||.-+. |-..||+++++.|+|++=.+
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~ 231 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFE 231 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHH
Confidence 556666666664 443333 23479999999999998653
No 313
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=43.45 E-value=78 Score=26.50 Aligned_cols=51 Identities=10% Similarity=0.193 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcC-c-eeEEEEeeec
Q 024311 204 LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEG-I-FGAHLIKEMT 259 (269)
Q Consensus 204 ~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g-~-~~~~~~~~~~ 259 (269)
+...+..+.++|+ |+|.++|........ . ..+....+..| + +...++|.-.
T Consensus 35 ~~~~~~~~~rvLk-~~g~~~i~~~~~~~~---~-~~~~~~~~~~g~~~~~~~iiW~K~ 87 (231)
T PF01555_consen 35 MEEWLKECYRVLK-PGGSIFIFIDDREIA---G-FLFELALEIFGGFFLRNEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHEE-EEEEEEEEE-CCEEC---T-HHHHHHHHHHTT-EEEEEEEEE-S
T ss_pred HHHHHHHHHhhcC-CCeeEEEEecchhhh---H-HHHHHHHHHhhhhheeccceeEec
Confidence 3556777788898 899988876554321 1 13444444556 5 5566777554
No 314
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=42.21 E-value=68 Score=27.54 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=28.5
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHH----HcCCCeEEEEeCCHHHH
Q 024311 32 LSFRGKRVLELSCGYGLPGIFAC----LKGAGTVHFQDLSAETI 71 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa----~~ga~~Vv~tD~~~~vl 71 (269)
..++|++|+=+|.| -.|..++ ..|+ +|+++|.+++.+
T Consensus 24 ~~l~gk~v~I~G~G--~vG~~~A~~L~~~G~-~Vvv~D~~~~~~ 64 (200)
T cd01075 24 DSLEGKTVAVQGLG--KVGYKLAEHLLEEGA-KLIVADINEEAV 64 (200)
T ss_pred CCCCCCEEEEECCC--HHHHHHHHHHHHCCC-EEEEEcCCHHHH
Confidence 46799999999998 4554433 4677 899999998765
No 315
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=41.99 E-value=2.3e+02 Score=27.81 Aligned_cols=46 Identities=26% Similarity=0.437 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCCH-HH-HHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGL-PG-IFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl-~g-l~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|-||||+.|-.|- +. |++...+-.-|++.|.|..-+ .-+..|+..
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~-----~~l~~n~~r 288 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL-----KSLKANLHR 288 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHH-----HHHHHHHHH
Confidence 78899999999983 33 444455556899999998766 556667654
No 316
>PRK08223 hypothetical protein; Validated
Probab=41.87 E-value=18 Score=33.40 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=34.5
Q ss_pred CCCCCCCEEEEEcCC-CCHH-HHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 31 QLSFRGKRVLELSCG-YGLP-GIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 31 ~~~~~~~~VLELGcG-tGl~-gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
+..+++.+||=+||| .|-+ ...+++.|..++++.|.+.--+ .|+.++.
T Consensus 22 Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~-----SNLnRQ~ 71 (287)
T PRK08223 22 QQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFEL-----RNFNRQA 71 (287)
T ss_pred HHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcch-----hcccccc
Confidence 346788999999998 3543 3457788999999999965322 6665543
No 317
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=41.49 E-value=57 Score=31.02 Aligned_cols=40 Identities=28% Similarity=0.374 Sum_probs=31.2
Q ss_pred CCCCEEEEEcCCC-CHHHHHHH-HcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGt-Gl~gl~aa-~~ga~~Vv~tD~~~~vl~~ 73 (269)
-.|.+|.=.|||. |+..+..| ..|+.++++.|++++=++.
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~ 225 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLEL 225 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHH
Confidence 3677888888884 88886644 5799999999999986643
No 318
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=41.31 E-value=2.7e+02 Score=25.47 Aligned_cols=53 Identities=13% Similarity=0.335 Sum_probs=37.9
Q ss_pred EEEEecccccc-CCHHHHHHHHHHhcCC-CCeEEEEE--EcccccccCcchHHHHHHhhhcCc
Q 024311 191 VILLTEIPYSV-TSLKKLYLLIKKCLRP-PYGVVYLA--TKKNYVGFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 191 lIlasD~iY~~-~~~~~L~~~l~~~L~~-p~g~~~va--~k~~~fg~~~~~~~F~~~~~~~g~ 249 (269)
+|+- |..|.. ..++.++++|+..++. ++|...|- .|.+ ..+..|.+.++..|+
T Consensus 159 lVLI-DPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r-----~~~~~f~~~L~~~~i 215 (279)
T COG2961 159 LVLI-DPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDR-----RQIRRFLRALEALGI 215 (279)
T ss_pred EEEe-CCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecch-----HHHHHHHHHHhhcCc
Confidence 4444 777765 6788899999987765 66765444 4444 358999999998885
No 319
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=40.98 E-value=1.5e+02 Score=24.85 Aligned_cols=62 Identities=18% Similarity=0.332 Sum_probs=39.7
Q ss_pred CCCCccEEEEe-------------ccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCce
Q 024311 185 GEGGYDVILLT-------------EIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 185 ~~~~fDlIlas-------------D~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~ 250 (269)
...+||.||-. .+-.+..++..++...+++|+ ++|.++|..+.-.. -..=.-..++++.|+.
T Consensus 72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~-~~G~IhVTl~~~~p---y~~W~i~~lA~~~gl~ 146 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLK-PDGEIHVTLKDGQP---YDSWNIEELAAEAGLV 146 (166)
T ss_pred cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCCC---CccccHHHHHHhcCCE
Confidence 45689999842 222444566677788888888 89999999776422 0111234677778874
No 320
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=40.78 E-value=2.1e+02 Score=26.18 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCHHH---HHH-HHcCCCeEEEEeCCHHHHHH
Q 024311 37 KRVLELSCGYGLPG---IFA-CLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 37 ~~VLELGcGtGl~g---l~a-a~~ga~~Vv~tD~~~~vl~~ 73 (269)
...||||||.=-.+ -+| ......+|+-.|.+|-++..
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah 110 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAH 110 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHH
Confidence 37999999953222 122 22344599999999988743
No 321
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=39.67 E-value=62 Score=28.75 Aligned_cols=36 Identities=33% Similarity=0.516 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCHHHHHH---H-HcCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFA---C-LKGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~a---a-~~ga~~Vv~tD~~~~vl 71 (269)
..+.+||=.|+| -.|+++ | .+|+++|+++|.+++-+
T Consensus 119 ~~g~~VlV~G~G--~vG~~~~~~ak~~G~~~Vi~~~~~~~r~ 158 (280)
T TIGR03366 119 LKGRRVLVVGAG--MLGLTAAAAAAAAGAARVVAADPSPDRR 158 (280)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 378899999875 455443 2 36776699999877644
No 322
>PLN02740 Alcohol dehydrogenase-like
Probab=39.66 E-value=52 Score=30.78 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=26.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHH---H-HcCCCeEEEEeCCHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFA---C-LKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~a---a-~~ga~~Vv~tD~~~~vl~ 72 (269)
...|.+||=.|| |-.|+++ | .+|+.+|+++|.+++-++
T Consensus 196 ~~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~ 237 (381)
T PLN02740 196 VQAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKFE 237 (381)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHHH
Confidence 346889999986 4555443 3 367767999999887653
No 323
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=38.50 E-value=1e+02 Score=27.78 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=33.3
Q ss_pred CCCCCCEEEEEcCCCCHH-H--HHHHHcCCCeEEEEeCCHHHHHH
Q 024311 32 LSFRGKRVLELSCGYGLP-G--IFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~-g--l~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
..+.|+.+|-=|+..|+- + ..++..|+ +|++++.+++-++.
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~ 47 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEE 47 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 467999999999999965 3 44677888 89999999887743
No 324
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=38.35 E-value=28 Score=31.04 Aligned_cols=47 Identities=21% Similarity=0.460 Sum_probs=31.9
Q ss_pred CCCCCCEEEEEcCC-CCHHH-HHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 32 LSFRGKRVLELSCG-YGLPG-IFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 32 ~~~~~~~VLELGcG-tGl~g-l~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
..+++++|+=+||| .|..- ..+++.|.+++++.|.+. + ...|+.++.
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~--v---e~sNL~Rq~ 76 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT--V---SLSNLQRQV 76 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE--E---Ccchhhhhh
Confidence 45688999999997 24222 346678889999999864 2 126665543
No 325
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=37.24 E-value=65 Score=29.96 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=26.0
Q ss_pred CCCCEEEEEcCCC-CHHHHHHH-HcCCCeEEEEeCCHHHHH
Q 024311 34 FRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 34 ~~~~~VLELGcGt-Gl~gl~aa-~~ga~~Vv~tD~~~~vl~ 72 (269)
..|.+||=.|||. |+..+.+| ..|+.+|+++|.+++-++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~ 224 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFE 224 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence 4688999998752 33333233 357767999999887653
No 326
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=36.70 E-value=57 Score=29.48 Aligned_cols=37 Identities=11% Similarity=-0.055 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCC-CHHHHHHH-HcCCCeEEEEeCCHHHH
Q 024311 35 RGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETI 71 (269)
Q Consensus 35 ~~~~VLELGcGt-Gl~gl~aa-~~ga~~Vv~tD~~~~vl 71 (269)
++.+||=+|||. |+..+.+| ..|+..|+++|.+++-+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl 182 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRR 182 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence 577899888753 44433333 36886788889877654
No 327
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=36.63 E-value=67 Score=28.74 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=24.2
Q ss_pred EEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 38 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 38 ~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
+|||.=||.|-=++++|..|. +|++...+|-+-
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia 110 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGC-KVTGLERSPVIA 110 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT---EEEEE--HHHH
T ss_pred EEEECCCcchHHHHHHHccCC-eEEEEECCHHHH
Confidence 899999999999998888887 899999998544
No 328
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=36.62 E-value=98 Score=29.65 Aligned_cols=53 Identities=23% Similarity=0.361 Sum_probs=36.2
Q ss_pred eeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCC-CCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 11 KCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCG-YGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 11 ~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcG-tGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.+||-..+.-+.|.-. .+.+||-|.+| +-.+.+ ...++++|++.|.||.-+.+
T Consensus 19 ~~WEDp~vD~~aL~i~--------~~d~vl~ItSaG~N~L~y--L~~~P~~I~aVDlNp~Q~aL 72 (380)
T PF11899_consen 19 QCWEDPRVDMEALNIG--------PDDRVLTITSAGCNALDY--LLAGPKRIHAVDLNPAQNAL 72 (380)
T ss_pred cccCCcHHHHHHhCCC--------CCCeEEEEccCCchHHHH--HhcCCceEEEEeCCHHHHHH
Confidence 3677777777666432 46688888654 444444 45678899999999976544
No 329
>PRK08339 short chain dehydrogenase; Provisional
Probab=35.12 E-value=2.8e+02 Score=24.17 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=28.3
Q ss_pred CCCCCEEEEEcCCCCHHHHH---HHHcCCCeEEEEeCCHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~---aa~~ga~~Vv~tD~~~~vl 71 (269)
.++++++|=.|++.|+-.-+ ++..|+ +|+++|.+++-+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~ 45 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENL 45 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 46899999999988764422 344687 899999987654
No 330
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=34.99 E-value=2.8e+02 Score=23.74 Aligned_cols=39 Identities=26% Similarity=0.223 Sum_probs=28.6
Q ss_pred CCCCCCEEEEEcCCCCHHHHH---HHHcCCCeEEEEeCCHHHH
Q 024311 32 LSFRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~---aa~~ga~~Vv~tD~~~~vl 71 (269)
..+++++||=.|++.|+-.-+ ++..|+ +|++++.+++.+
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~ 48 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATL 48 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHH
Confidence 457899999999877764422 234577 899999987655
No 331
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=34.04 E-value=62 Score=31.09 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=35.2
Q ss_pred CCCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHH--HHHcCCCeEEEEeCCH
Q 024311 4 SKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIF--ACLKGAGTVHFQDLSA 68 (269)
Q Consensus 4 g~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~--aa~~ga~~Vv~tD~~~ 68 (269)
.+|-+|..+|++=..- .+..+.||.|+=.|-|-=-=|++ +.-.|+ +|+.|+.+|
T Consensus 187 NrYGtgqS~~DgI~Ra----------Tn~liaGK~vVV~GYG~vGrG~A~~~rg~GA-~ViVtEvDP 242 (420)
T COG0499 187 NRYGTGQSLLDGILRA----------TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGA-RVIVTEVDP 242 (420)
T ss_pred cccccchhHHHHHHhh----------hceeecCceEEEecccccchHHHHHhhcCCC-eEEEEecCc
Confidence 5678888777643221 34577899998877553222233 333577 899999988
No 332
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=33.50 E-value=96 Score=29.33 Aligned_cols=37 Identities=30% Similarity=0.266 Sum_probs=27.6
Q ss_pred CCCCEEEEEcCCCCHHH--HHHHH-cCCCeEEEEeCCHHHHH
Q 024311 34 FRGKRVLELSCGYGLPG--IFACL-KGAGTVHFQDLSAETIR 72 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~g--l~aa~-~ga~~Vv~tD~~~~vl~ 72 (269)
-.|++|+=.|+| |+-- +-.|+ .|+ +|++.|.+++-++
T Consensus 165 ~pG~~V~I~G~G-GlGh~avQ~Aka~ga-~Via~~~~~~K~e 204 (339)
T COG1064 165 KPGKWVAVVGAG-GLGHMAVQYAKAMGA-EVIAITRSEEKLE 204 (339)
T ss_pred CCCCEEEEECCc-HHHHHHHHHHHHcCC-eEEEEeCChHHHH
Confidence 368899999999 6433 33444 786 9999999998663
No 333
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=33.41 E-value=46 Score=34.27 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=28.8
Q ss_pred CCCCCEEEEEcCCC-CH-HHHHHHHcCCCeEEEEeCCH
Q 024311 33 SFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 33 ~~~~~~VLELGcGt-Gl-~gl~aa~~ga~~Vv~tD~~~ 68 (269)
.+++.+||=+|||+ |- +...++..|.+++++.|.+.
T Consensus 335 kL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 335 RYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred HHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 45789999999997 63 33567788999999999854
No 334
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=32.69 E-value=58 Score=28.56 Aligned_cols=37 Identities=22% Similarity=0.097 Sum_probs=27.7
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCH
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSA 68 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~ 68 (269)
...++.+|||+||-.|-=+-+|-++ + ...|.+.|+-+
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 3457889999999999888666543 2 25799999843
No 335
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=32.63 E-value=25 Score=27.77 Aligned_cols=37 Identities=35% Similarity=0.556 Sum_probs=25.5
Q ss_pred CccEEEEecccccc------CCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 188 GYDVILLTEIPYSV------TSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 188 ~fDlIlasD~iY~~------~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
+||+|++=.+.=+. +-+..+++.+..+|+ |+|++++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~-pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLR-PGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhC-CCCEEEEe
Confidence 48999987665443 234457777777898 89999885
No 336
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=32.26 E-value=1e+02 Score=28.38 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=37.1
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHH--HH----HcCC------CeEEEEeCC
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIF--AC----LKGA------GTVHFQDLS 67 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~--aa----~~ga------~~Vv~tD~~ 67 (269)
+++.||-.|......+ ..+++.+|+=+|+|+.-.|++ +. ..|. +++++.|..
T Consensus 5 a~V~lAgllnAlk~~g-~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~ 68 (279)
T cd05312 5 AAVALAGLLAALRITG-KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK 68 (279)
T ss_pred HHHHHHHHHHHHHHhC-CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCC
Confidence 4677888877654333 467889999999999877765 11 1265 689999985
No 337
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=32.23 E-value=1e+02 Score=27.69 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=34.9
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.|+.+|..... -...+-+|.=||.|.+.+... ++.+++.|.|++++..
T Consensus 13 ~l~~~i~~~~p-----~~~~~yvEPF~Gggsv~l~~~---~~~~~lND~n~~Li~~ 60 (266)
T TIGR00571 13 SLLPEIKKHLP-----KNFNCLVEPFVGGGAVFFNLN---PKRYLLNDINEDLINL 60 (266)
T ss_pred HHHHHHHHhcC-----cccCEEEEecCCcchhheeec---CcEEEEecCCHHHHHH
Confidence 46777777642 122489999999997776432 3479999999998854
No 338
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.15 E-value=64 Score=28.01 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=31.7
Q ss_pred CCCCccEEEEeccccc-cCCHHHHHHHHHHhcCCCCeEEEEEEccc
Q 024311 185 GEGGYDVILLTEIPYS-VTSLKKLYLLIKKCLRPPYGVVYLATKKN 229 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~-~~~~~~L~~~l~~~L~~p~g~~~va~k~~ 229 (269)
..++||+||+ |..|- .+...+-..+++++.+ ++-++++++..+
T Consensus 132 lk~~fdiiva-DPPfL~~eCl~Kts~tik~L~r-~~~kvilCtGei 175 (217)
T KOG3350|consen 132 LKAHFDIIVA-DPPFLSEECLAKTSETIKRLQR-NQKKVILCTGEI 175 (217)
T ss_pred HHhcccEEEe-CCccccchhhhhhHHHHHHHhc-CCceEEEechhH
Confidence 3457999999 66654 4566778888998877 777888877554
No 339
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=32.14 E-value=88 Score=26.54 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=15.8
Q ss_pred CCCHHHH----HHHHcCCCeEEEEeCCHHHHH
Q 024311 45 GYGLPGI----FACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 45 GtGl~gl----~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
|.|..|+ ++|..|. +|++.|.|++.++
T Consensus 7 GlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~ 37 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGH-QVIGVDIDEEKVE 37 (185)
T ss_dssp --STTHHHHHHHHHHTTS-EEEEE-S-HHHHH
T ss_pred CCCcchHHHHHHHHhCCC-EEEEEeCChHHHH
Confidence 4444443 3445675 8999999998773
No 340
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=31.68 E-value=53 Score=25.95 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCEEEEEcCCC-CH-HHHHHHHcCCCeEEEEeCCH
Q 024311 36 GKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 36 ~~~VLELGcGt-Gl-~gl~aa~~ga~~Vv~tD~~~ 68 (269)
.++|+=+|||. |. ....+++.|..++++.|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 56899999973 52 22446678999999999864
No 341
>PRK08328 hypothetical protein; Provisional
Probab=31.59 E-value=40 Score=29.70 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=27.9
Q ss_pred CCCCCCEEEEEcCCC-CHHH-HHHHHcCCCeEEEEeCCH
Q 024311 32 LSFRGKRVLELSCGY-GLPG-IFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 32 ~~~~~~~VLELGcGt-Gl~g-l~aa~~ga~~Vv~tD~~~ 68 (269)
..+++.+|+=+|||- |-.- ..+++.|.+++++.|.+.
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 456788999999993 4222 346778999999999865
No 342
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=31.57 E-value=39 Score=29.01 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=27.6
Q ss_pred CCCCCCEEEEEcCCC-CH-HHHHHHHcCCCeEEEEeCCH
Q 024311 32 LSFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 32 ~~~~~~~VLELGcGt-Gl-~gl~aa~~ga~~Vv~tD~~~ 68 (269)
..+++++||=+|||. |. ....+++.|.+++++.|.+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 456889999999993 32 22346678988999999864
No 343
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=31.43 E-value=92 Score=28.69 Aligned_cols=36 Identities=31% Similarity=0.448 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCHHHHHH---H-HcCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFA---C-LKGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~a---a-~~ga~~Vv~tD~~~~vl 71 (269)
..|.+||=.|| |..|+++ | ..|+++|+++|.+++-+
T Consensus 175 ~~g~~VlV~G~--g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~ 214 (358)
T TIGR03451 175 KRGDSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDDRKL 214 (358)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence 46889999886 4455443 3 36776799999987654
No 344
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=31.24 E-value=80 Score=28.62 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=34.9
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHH--HHH----cCC------CeEEEEeCC
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIF--ACL----KGA------GTVHFQDLS 67 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~--aa~----~ga------~~Vv~tD~~ 67 (269)
+++.||-.|......+ ..+++.+|+=+|+|+.-.|++ +.. .|. +++++.|..
T Consensus 5 aaV~lAgll~Al~~~g-~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~ 68 (255)
T PF03949_consen 5 AAVVLAGLLNALRVTG-KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSK 68 (255)
T ss_dssp HHHHHHHHHHHHHHHT-S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETT
T ss_pred HHHHHHHHHHHHHHhC-CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEecc
Confidence 4677887776654333 357889999999999877764 222 266 789999985
No 345
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=30.66 E-value=1.3e+02 Score=23.74 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=16.7
Q ss_pred EEcCCCCHHH--HHH--HHcC-CCeEEEEeCCHHHHH
Q 024311 41 ELSCGYGLPG--IFA--CLKG-AGTVHFQDLSAETIR 72 (269)
Q Consensus 41 ELGcGtGl~g--l~a--a~~g-a~~Vv~tD~~~~vl~ 72 (269)
|+||..|..+ +.. +..+ ..+|++.+-+|..++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~ 37 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFE 37 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHH
Confidence 7999999333 222 2233 358999999998773
No 346
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=30.63 E-value=97 Score=24.63 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=28.6
Q ss_pred CCCCCEEEEEcCCCCHHHHH--HHHcCCCeEEEEeCCHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIF--ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~--aa~~ga~~Vv~tD~~~~vl 71 (269)
.+++++||=+|+|--.-+++ ++..|+++|+++..+.+-.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra 49 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERA 49 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 56899999999975333332 3456888899999987644
No 347
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=30.51 E-value=21 Score=35.38 Aligned_cols=47 Identities=28% Similarity=0.292 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHH--cCCCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~--~ga~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
.+.+|||-=|+||+-+|--|. -|..+|++.|.++..+..+ +.|+++|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i-~~Nv~~N 157 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSI-QRNVELN 157 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHH-Hhhhhhc
Confidence 567999999999999987765 3567899999999988433 4555555
No 348
>PRK05867 short chain dehydrogenase; Provisional
Probab=29.99 E-value=3.3e+02 Score=23.26 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=27.7
Q ss_pred CCCCCEEEEEcCCCCHHHHH---HHHcCCCeEEEEeCCHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~---aa~~ga~~Vv~tD~~~~vl 71 (269)
.+++++||=.|++.|+-.-+ ++..|+ +|++++.+++-+
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~ 46 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDAL 46 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHH
Confidence 35789999999977754422 344677 899999987655
No 349
>PRK06949 short chain dehydrogenase; Provisional
Probab=29.89 E-value=3.5e+02 Score=23.01 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=26.8
Q ss_pred CCCCCCEEEEEcCCCCHHHHH----HHHcCCCeEEEEeCCHHHH
Q 024311 32 LSFRGKRVLELSCGYGLPGIF----ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~----aa~~ga~~Vv~tD~~~~vl 71 (269)
..+++++||=.|++.| .|.. ++..|+ +|++++.+++-+
T Consensus 5 ~~~~~k~ilItGasg~-IG~~~a~~l~~~G~-~Vi~~~r~~~~~ 46 (258)
T PRK06949 5 INLEGKVALVTGASSG-LGARFAQVLAQAGA-KVVLASRRVERL 46 (258)
T ss_pred cCCCCCEEEEECCCcH-HHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 3567899999995554 4433 334677 799999988655
No 350
>PRK06172 short chain dehydrogenase; Provisional
Probab=29.81 E-value=3.5e+02 Score=23.02 Aligned_cols=37 Identities=27% Similarity=0.213 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCCCCHHHHH---HHHcCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~---aa~~ga~~Vv~tD~~~~vl 71 (269)
+++++||=.|++.|+-.-+ ++..|+ +|++++.+++-+
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~ 44 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGG 44 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHH
Confidence 5789999999877655533 334676 799999987654
No 351
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=29.64 E-value=1e+02 Score=29.17 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=26.6
Q ss_pred CCCEEEEEcC-C-CCHHHHHHHHc---CCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSC-G-YGLPGIFACLK---GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGc-G-tGl~gl~aa~~---ga~~Vv~tD~~~~vl~~ 73 (269)
.|.+||=+|+ | .|+..+.+|+. |+.+|+++|.+++-++.
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~ 218 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLAR 218 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHH
Confidence 5678888874 4 35555545553 45689999999876543
No 352
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=29.58 E-value=3.6e+02 Score=23.12 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=25.9
Q ss_pred CCCCCEEEEEcCCCCHHHHHHH----HcCCCeEEEEeCCHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFAC----LKGAGTVHFQDLSAETI 71 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa----~~ga~~Vv~tD~~~~vl 71 (269)
.+++++||=.|+. |..|..++ ..|+ +|++++.+++-+
T Consensus 9 ~~~~k~ilItGa~-g~IG~~la~~l~~~G~-~V~~~~r~~~~~ 49 (259)
T PRK08213 9 DLSGKTALVTGGS-RGLGLQIAEALGEAGA-RVVLSARKAEEL 49 (259)
T ss_pred CcCCCEEEEECCC-chHHHHHHHHHHHcCC-EEEEEeCCHHHH
Confidence 4578999999964 44454433 3577 899999987544
No 353
>PF08515 TGF_beta_GS: Transforming growth factor beta type I GS-motif; InterPro: IPR003605 Transforming growth factor beta (TGF-beta) is a member of a large family of secreted growth factors of central importance in eukaryotic development and homeostasis. Members of this family, which includes the activins, inhibins and bone morphogenic proteins (BMPs), bind to receptors that consist of two transmembrane serine/threonine (Ser/Thr) kinases called the type I and type II receptors. Type II activates Type I upon formation of the ligand receptor complex by multiply phosphorylating the GS domain, a short (~30 residues), highly conserved regulatory sequence just N-terminal to the kinase domain on the cytoplasmic side of the receptor. The GS domain is found only in the type I receptor family and is named for the TTSGSGSG sequence at its core. At least three, and perhaps four to five of the serines and threonines in the GS domain, must be phosphorylated to fully activate TbetaR-1 []. The GS domain forms a helix-loop-helix structure in which the sites of activating phosphorylation are situated in a loop known as the GS loop. One key role for phosphorylation is to block the adoption of an inactivating configuration by the GS domain [].; GO: 0004675 transmembrane receptor protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0016020 membrane; PDB: 3MY0_H 3Q4U_B 3H9R_A 3MTF_B 3OOM_A 3KCF_C 3FAA_A 1IAS_A 1PY5_A 2X7O_C ....
Probab=29.52 E-value=28 Score=20.84 Aligned_cols=10 Identities=40% Similarity=0.730 Sum_probs=7.0
Q ss_pred cCCCCHHHHH
Q 024311 43 SCGYGLPGIF 52 (269)
Q Consensus 43 GcGtGl~gl~ 52 (269)
|+|.|+|-|+
T Consensus 14 GSGSGlplLv 23 (29)
T PF08515_consen 14 GSGSGLPLLV 23 (29)
T ss_dssp TSSSSS-HHH
T ss_pred CCCCCchhhh
Confidence 6899988765
No 354
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=29.47 E-value=3.7e+02 Score=23.22 Aligned_cols=39 Identities=31% Similarity=0.497 Sum_probs=28.6
Q ss_pred CCCCCCEEEEEcCCCCHHHHH---HHHcCCCeEEEEeCCHHHH
Q 024311 32 LSFRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~---aa~~ga~~Vv~tD~~~~vl 71 (269)
..++++++|=.|++.|+-.-+ ++..|+ +|++++.+++-+
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~ 47 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELV 47 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHH
Confidence 456899999999998764422 344677 799999887654
No 355
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=29.42 E-value=89 Score=28.42 Aligned_cols=35 Identities=23% Similarity=0.477 Sum_probs=26.0
Q ss_pred CCCCCEEEEEcCCCCHHH-HH--HHHcCCCeEEEEeCCH
Q 024311 33 SFRGKRVLELSCGYGLPG-IF--ACLKGAGTVHFQDLSA 68 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~g-l~--aa~~ga~~Vv~tD~~~ 68 (269)
..++++||=+||| |..- ++ ++..|+++|++.+.++
T Consensus 123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4678999999997 5433 32 3457887899999986
No 356
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=29.39 E-value=2.3e+02 Score=21.80 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHh------hhcCceeEEEEeeec
Q 024311 202 TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLV------DEEGIFGAHLIKEMT 259 (269)
Q Consensus 202 ~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~------~~~g~~~~~~~~~~~ 259 (269)
..+.++++.|+..|+.+++.+-+--+-.||. ..+...+++.+ .++| ..+++.|-..
T Consensus 25 ~Fy~Pi~~wl~~Yl~~~~~~i~~~~~L~YfN-TSSsk~l~~i~~~Le~~~~~g-~~V~v~Wyyd 86 (99)
T PF09345_consen 25 AFYQPILDWLEAYLAEPNKPITFNFKLSYFN-TSSSKALMDIFDLLEDAAQKG-GKVTVNWYYD 86 (99)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEEEEEe-cHhHHHHHHHHHHHHHHHhcC-CcEEEEEEEC
Confidence 5678999999999997777788888888884 34444444333 3455 3678877554
No 357
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=29.39 E-value=96 Score=30.04 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=34.5
Q ss_pred CCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCC-CHHHHH-HHHcCCCeEEEEeCCHH
Q 024311 5 KPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGY-GLPGIF-ACLKGAGTVHFQDLSAE 69 (269)
Q Consensus 5 ~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGt-Gl~gl~-aa~~ga~~Vv~tD~~~~ 69 (269)
.|-+|..+|++ +.+. .+..+.|++|+=+|+|. |..-.. +...|+ +|+++|.++.
T Consensus 174 ~yg~g~s~~~~-------i~r~---t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~ 229 (406)
T TIGR00936 174 RYGTGQSTIDG-------ILRA---TNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPI 229 (406)
T ss_pred ccccchhHHHH-------HHHh---cCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChh
Confidence 46677666643 2221 12357899999999996 433322 233577 7999999874
No 358
>PRK08862 short chain dehydrogenase; Provisional
Probab=29.36 E-value=1.5e+02 Score=25.49 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=28.1
Q ss_pred CCCCEEEEEcCCCCHHH---HHHHHcCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPG---IFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~g---l~aa~~ga~~Vv~tD~~~~vl 71 (269)
++++++|=.|++.|+-- ..++..|+ +|++.+.+++-+
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l 42 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSAL 42 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHH
Confidence 57899999999998632 22445787 799999988765
No 359
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=29.18 E-value=3.5e+02 Score=22.76 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCHHHHHH----HHcCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFA----CLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~a----a~~ga~~Vv~tD~~~~vl 71 (269)
..+++||=.|++ |..|..+ +..|+ +|++++.+++-+
T Consensus 4 ~~~~~ilItGas-g~iG~~l~~~l~~~g~-~V~~~~r~~~~~ 43 (251)
T PRK12826 4 LEGRVALVTGAA-RGIGRAIAVRLAADGA-EVIVVDICGDDA 43 (251)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 467899988875 4455433 34576 899999987544
No 360
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=29.12 E-value=1e+02 Score=28.60 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCHHHHHH---H-HcCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFA---C-LKGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~a---a-~~ga~~Vv~tD~~~~vl 71 (269)
..|.+||=+|+| ..|+++ | ..|+++|+++|.+++-+
T Consensus 190 ~~g~~VlV~G~G--~vG~~a~~lak~~G~~~Vi~~~~~~~r~ 229 (371)
T cd08281 190 RPGQSVAVVGLG--GVGLSALLGAVAAGASQVVAVDLNEDKL 229 (371)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHcCCCcEEEEcCCHHHH
Confidence 357788888875 455443 2 36776799999988755
No 361
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=28.81 E-value=80 Score=28.63 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=35.8
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHH--HHHcCC----------CeEEEEeCC
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIF--ACLKGA----------GTVHFQDLS 67 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~--aa~~ga----------~~Vv~tD~~ 67 (269)
+++.||-.|......+ ..+++.+|+=+|+|+.-.|++ +...+. +++++.|..
T Consensus 5 aaV~lAgllnAlk~~g-~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~ 68 (254)
T cd00762 5 ASVAVAGLLAALKVTK-KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRK 68 (254)
T ss_pred HHHHHHHHHHHHHHhC-CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCC
Confidence 4677777776654333 357889999999999878765 222222 278988874
No 362
>PLN02827 Alcohol dehydrogenase-like
Probab=28.81 E-value=1.1e+02 Score=28.74 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHH----HcCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFAC----LKGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa----~~ga~~Vv~tD~~~~vl 71 (269)
..|.+||=.|+ |..|+++. ..|+..|+++|.+++-+
T Consensus 192 ~~g~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~~~~ 231 (378)
T PLN02827 192 SKGSSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINPEKA 231 (378)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHH
Confidence 46889999986 44664433 36776799999877654
No 363
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=28.16 E-value=46 Score=31.26 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=27.8
Q ss_pred CCCCCCCEEEEEcCCC-CHH-HHHHHHcCCCeEEEEeCCH
Q 024311 31 QLSFRGKRVLELSCGY-GLP-GIFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 31 ~~~~~~~~VLELGcGt-Gl~-gl~aa~~ga~~Vv~tD~~~ 68 (269)
+..++.++||=+|||- |-. ...+++.|..++++.|.+.
T Consensus 19 Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 19 QQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 3456889999999983 322 2345677888999999864
No 364
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=28.01 E-value=1.5e+02 Score=28.74 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=29.1
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccc
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN 229 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~ 229 (269)
.....++|+..-+-++|++--.+-+.+++| +.|.=+|+++..
T Consensus 269 I~~eatvi~vNN~~Fdp~L~lr~~eil~~c---k~gtrIiS~~~L 310 (419)
T KOG3924|consen 269 IQTEATVIFVNNVAFDPELKLRSKEILQKC---KDGTRIISSKPL 310 (419)
T ss_pred HhhcceEEEEecccCCHHHHHhhHHHHhhC---CCcceEeccccc
Confidence 345789999999999998877777666653 344444555443
No 365
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=28.00 E-value=1.7e+02 Score=27.16 Aligned_cols=54 Identities=20% Similarity=0.413 Sum_probs=36.7
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHHhcC--CCCeEEEEEEcccccccCcchHHHHHHhhhcC
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLR--PPYGVVYLATKKNYVGFNNAARHLRSLVDEEG 248 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~--~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g 248 (269)
...||.||. |.|..-..+-..|.++|+ +|+|.++++.+++ +|.....++++.-|
T Consensus 35 ~~~~d~~l~----~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~~-----~g~~s~~k~l~~~~ 90 (300)
T COG2813 35 PDDFDAVLL----YWPKHKAEAEFQLAQLLARLPPGGEIVVVGEKR-----DGVRSAEKMLEKYG 90 (300)
T ss_pred cCCCCEEEE----EccCchHHHHHHHHHHHhhCCCCCeEEEEeccc-----chHHHHHHHHHHhc
Confidence 348999875 888877765444444433 2899999998876 36667777666544
No 366
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=27.70 E-value=39 Score=30.06 Aligned_cols=37 Identities=22% Similarity=0.420 Sum_probs=27.7
Q ss_pred CCCCCCEEEEEcCCC-CHH-HHHHHHcCCCeEEEEeCCH
Q 024311 32 LSFRGKRVLELSCGY-GLP-GIFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 32 ~~~~~~~VLELGcGt-Gl~-gl~aa~~ga~~Vv~tD~~~ 68 (269)
..+++.+|+=+|||. |.. ...+++.|.+++++.|.+.
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 346788999999983 432 2446778999999999865
No 367
>PRK05876 short chain dehydrogenase; Provisional
Probab=27.51 E-value=3.9e+02 Score=23.50 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=27.4
Q ss_pred CCCCEEEEEcCCCCHHHHH---HHHcCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~---aa~~ga~~Vv~tD~~~~vl 71 (269)
+++++||=.|++.|+-.-+ ++..|+ +|+++|.+++-+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l 43 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGL 43 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 5789999999987764422 345677 799999987655
No 368
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=27.37 E-value=74 Score=27.41 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=27.3
Q ss_pred CCCCCCEEEEEcCCC-CH-HHHHHHHcCCCeEEEEeCC
Q 024311 32 LSFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLS 67 (269)
Q Consensus 32 ~~~~~~~VLELGcGt-Gl-~gl~aa~~ga~~Vv~tD~~ 67 (269)
..++.++|+=+|||. |. ....+++.|..++++.|.+
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 456888999999984 32 2234677888899999997
No 369
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=27.33 E-value=2.4e+02 Score=23.32 Aligned_cols=52 Identities=12% Similarity=0.240 Sum_probs=31.4
Q ss_pred CCccEEEEeccccccCCHHHHHHHHH---HhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcC
Q 024311 187 GGYDVILLTEIPYSVTSLKKLYLLIK---KCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEG 248 (269)
Q Consensus 187 ~~fDlIlasD~iY~~~~~~~L~~~l~---~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g 248 (269)
..||.|| +|.|..-+.+--.|. .+|. +++.+||+..++ +|+..-..+++.-|
T Consensus 68 ~~~D~vv----ly~PKaK~e~~~lL~~l~~~L~-~g~~i~vVGEnk-----~GIkSa~K~L~~~~ 122 (155)
T PF08468_consen 68 QDFDTVV----LYWPKAKAEAQYLLANLLSHLP-PGTEIFVVGENK-----GGIKSAEKQLAPYG 122 (155)
T ss_dssp TT-SEEE----EE--SSHHHHHHHHHHHHTTS--TT-EEEEEEEGG-----GTGGGHHHHHTTTS
T ss_pred cCCCEEE----EEccCcHHHHHHHHHHHHHhCC-CCCEEEEEecCc-----ccHHHHHHHHHhhC
Confidence 4799997 599988876544444 4454 788888887665 46666666666543
No 370
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.10 E-value=1.3e+02 Score=26.16 Aligned_cols=37 Identities=22% Similarity=0.115 Sum_probs=26.7
Q ss_pred CCCCCCEEEEEcCCCC-HHHHH----HHHcCCCeEEEEeCCHH
Q 024311 32 LSFRGKRVLELSCGYG-LPGIF----ACLKGAGTVHFQDLSAE 69 (269)
Q Consensus 32 ~~~~~~~VLELGcGtG-l~gl~----aa~~ga~~Vv~tD~~~~ 69 (269)
..++|+.||=.|++.| -.|.. ++..|+ +|+++|.++.
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~ 47 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDK 47 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChh
Confidence 4568999999998752 44443 334677 7999999764
No 371
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=26.98 E-value=1.7e+02 Score=27.48 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=35.0
Q ss_pred eeeccHHHHHH-----HHhhhhhcCCC---------CCCCCEEEEEcCCCC--HHHHHHHHc----------CC------
Q 024311 11 KCWESSIDLVN-----VLKHEIRDGQL---------SFRGKRVLELSCGYG--LPGIFACLK----------GA------ 58 (269)
Q Consensus 11 ~vW~as~~La~-----~L~~~~~~~~~---------~~~~~~VLELGcGtG--l~gl~aa~~----------ga------ 58 (269)
.-|..+..|+. .|.++...... ..+..+||-+|-|.| +++++++.. ..
T Consensus 48 ~RWSPsRAL~Yaslf~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~ 127 (315)
T PF11312_consen 48 ARWSPSRALAYASLFASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSS 127 (315)
T ss_pred eccCHHHHHHHHHHHHHHHHHHHhhccccccccccccccCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccC
Confidence 35888888876 22222211011 224479999999997 666665541 00
Q ss_pred ---CeEEEEeCCH
Q 024311 59 ---GTVHFQDLSA 68 (269)
Q Consensus 59 ---~~Vv~tD~~~ 68 (269)
..|++.|+.+
T Consensus 128 ~~~l~itlvDiAd 140 (315)
T PF11312_consen 128 PPSLSITLVDIAD 140 (315)
T ss_pred CCcceEEEEEecC
Confidence 2799999954
No 372
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=26.82 E-value=44 Score=30.44 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=29.3
Q ss_pred CCCCCCEEEEEcCCC-C-HHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 32 LSFRGKRVLELSCGY-G-LPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 32 ~~~~~~~VLELGcGt-G-l~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
..+++.+|+=+|||- | -+.-.+++.|.+++++.|.+.-..
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~ 67 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCV 67 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecc
Confidence 456889999999983 4 222446778888999999876433
No 373
>PRK06141 ornithine cyclodeaminase; Validated
Probab=26.53 E-value=1.6e+02 Score=27.13 Aligned_cols=62 Identities=11% Similarity=0.049 Sum_probs=41.8
Q ss_pred CCCCCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHH-H--HHHcCCCeEEEEeCCHHHH
Q 024311 2 ISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGI-F--ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 2 ~~g~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl-~--aa~~ga~~Vv~tD~~~~vl 71 (269)
+.|.|-|++++=-+|-.-++||... ..++|+=+|||.=--.+ . +...+..+|++.+.+++-.
T Consensus 99 ~d~~~lT~~RTaa~sala~~~La~~--------~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a 163 (314)
T PRK06141 99 VDGTELTARRTAAASALAASYLARK--------DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKA 163 (314)
T ss_pred EcCcchhcchhHHHHHHHHHHhCCC--------CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHH
Confidence 3566667777766777777887653 46789999988632222 2 2225667899999987765
No 374
>PRK07877 hypothetical protein; Provisional
Probab=26.43 E-value=63 Score=33.69 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=29.6
Q ss_pred CCCCCCCEEEEEcCCCCHHH-HHHHHcCC-CeEEEEeCCH
Q 024311 31 QLSFRGKRVLELSCGYGLPG-IFACLKGA-GTVHFQDLSA 68 (269)
Q Consensus 31 ~~~~~~~~VLELGcGtGl~g-l~aa~~ga-~~Vv~tD~~~ 68 (269)
+..+++++|+=+|||.|-.- ..+++.|. .++++.|.+.
T Consensus 102 Q~~L~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 102 QERLGRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred HHHHhcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcCCE
Confidence 44678999999999876433 45677885 8999999965
No 375
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=26.24 E-value=69 Score=28.13 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=31.0
Q ss_pred CCccEEEEec-----------cccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 187 GGYDVILLTE-----------IPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 187 ~~fDlIlasD-----------~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
..||.|+.|| +.|+.+..+.-++.|+...++.+|...|..
T Consensus 68 ~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~likdyV~~GGGLLMiGG 118 (254)
T COG5426 68 DAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLIKDYVENGGGLLMIGG 118 (254)
T ss_pred cccceEEEeecCCceeeccccceeecccCccHHHHHHHHHhcCCcEEEEcc
Confidence 4778887765 578888899999999999986666666553
No 376
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=26.07 E-value=73 Score=30.50 Aligned_cols=49 Identities=27% Similarity=0.516 Sum_probs=35.4
Q ss_pred CCCCCCCCEEEEEcCC-CCHHH-HHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 30 GQLSFRGKRVLELSCG-YGLPG-IFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 30 ~~~~~~~~~VLELGcG-tGl~g-l~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
++..+++..||=+||| .|-|. ..++..|..++=+.||+. ++. .|+.+-+
T Consensus 60 GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~Dv--Ve~---sNlhRQV 110 (427)
T KOG2017|consen 60 GQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDV--VEL---SNLHRQV 110 (427)
T ss_pred cccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccce--eeh---hhHHHHH
Confidence 4556788999999998 48887 456778888999999964 322 5665543
No 377
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=26.04 E-value=1.5e+02 Score=28.78 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=40.5
Q ss_pred CCCCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCC-CCHHH-HHHHHcCCCeEEEEeCCHH
Q 024311 3 SSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCG-YGLPG-IFACLKGAGTVHFQDLSAE 69 (269)
Q Consensus 3 ~g~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcG-tGl~g-l~aa~~ga~~Vv~tD~~~~ 69 (269)
+++.+++..+=.+++.||+-+.. .+++++||=+|+| +|-.. -.++..|..+|++.-.+.+
T Consensus 152 T~I~~~~VSi~saAv~lA~~~~~-------~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~e 213 (414)
T COG0373 152 TGIGKGAVSISSAAVELAKRIFG-------SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLE 213 (414)
T ss_pred cCCCCCccchHHHHHHHHHHHhc-------ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHH
Confidence 45556666666667777765543 3689999999999 66333 3455678788988876543
No 378
>PRK07035 short chain dehydrogenase; Provisional
Probab=26.04 E-value=4.1e+02 Score=22.56 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=28.3
Q ss_pred CCCCCEEEEEcCCCCHHHHH---HHHcCCCeEEEEeCCHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~---aa~~ga~~Vv~tD~~~~vl 71 (269)
.+++++||=.|++.|+-.-+ ++..|+ +|+++|.+++-+
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~ 45 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGC 45 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 46789999999998765522 344677 899999987654
No 379
>PRK07411 hypothetical protein; Validated
Probab=25.99 E-value=36 Score=32.55 Aligned_cols=47 Identities=17% Similarity=0.276 Sum_probs=32.9
Q ss_pred CCCCCCEEEEEcCCC-CH-HHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 32 LSFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 32 ~~~~~~~VLELGcGt-Gl-~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
..++..+||=+|||. |- ....+++.|.+++++.|.+.--+ .|+.+++
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~-----sNL~RQ~ 82 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDS-----SNLQRQV 82 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecc-----cccCcCc
Confidence 456888999999993 42 22446778999999999864222 5665544
No 380
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=25.44 E-value=52 Score=29.18 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=27.3
Q ss_pred CCCCCEEEEEcCC-CCH-HHHHHHHcCCCeEEEEeCCH
Q 024311 33 SFRGKRVLELSCG-YGL-PGIFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 33 ~~~~~~VLELGcG-tGl-~gl~aa~~ga~~Vv~tD~~~ 68 (269)
.+++++||=+||| .|- ....+++.|..++++.|.+.
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4578899999998 342 22446778999999999865
No 381
>cd06066 H2MP_NAD-link-bidir Endopeptidases that belong to the bidirectional NAD-linked hydrogenase group. This group of endopeptidases are highly specific carboxyl-terminal protease (HoxW protease) which releases a 24-amino-acid peptide from HoxH prior to progression of subunit assembly. These bidirectional hydrogenases are heteropentamers encoded by the hox (hydrogen oxidation) genes, in which complex HoxEFU shows the diaphorase activity, and HoxYH constitutes the NiFe-hydrogenase.
Probab=25.04 E-value=2.2e+02 Score=22.76 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeC
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL 66 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~ 66 (269)
+..+++.|.++. ..+..++| ||++.+.++....++.++++.|-
T Consensus 16 G~~v~~~L~~~~------~~~v~~id--~g~~g~~l~~~l~~~d~vIivDA 58 (139)
T cd06066 16 GPAVAERIEEWL------LPGVEVLA--VHQLTPELAEDLAGADRVIFIDA 58 (139)
T ss_pred hHHHHHHHHhhC------CCCeEEEE--cCCCCHHHHHHhcCCCEEEEEEc
Confidence 456777776542 24556776 55544444444567889999996
No 382
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=24.79 E-value=2.8e+02 Score=23.69 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=26.4
Q ss_pred CCCCCEEEEEcCCCCHHHHHHH----HcCCCeEEEEeCCHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFAC----LKGAGTVHFQDLSAETI 71 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa----~~ga~~Vv~tD~~~~vl 71 (269)
.+++++||=.|+..| .|..++ ..|+ +|+++|.+++-+
T Consensus 7 ~~~~k~vlItGa~g~-iG~~ia~~l~~~G~-~V~~~~r~~~~~ 47 (255)
T PRK07523 7 DLTGRRALVTGSSQG-IGYALAEGLAQAGA-EVILNGRDPAKL 47 (255)
T ss_pred CCCCCEEEEECCcch-HHHHHHHHHHHcCC-EEEEEeCCHHHH
Confidence 467899999997544 454433 3577 899999987654
No 383
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.62 E-value=2.2e+02 Score=26.05 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=27.4
Q ss_pred CCCCCCCEEEEEcCC--CCHHH-HHHHHcCCCeEEEEeCC
Q 024311 31 QLSFRGKRVLELSCG--YGLPG-IFACLKGAGTVHFQDLS 67 (269)
Q Consensus 31 ~~~~~~~~VLELGcG--tGl~g-l~aa~~ga~~Vv~tD~~ 67 (269)
...++|++|+=+|+| .|.+= .++...|+ +|++++..
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~ 192 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSR 192 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 357899999999999 46553 44556788 99999874
No 384
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=24.60 E-value=1.5e+02 Score=25.18 Aligned_cols=37 Identities=32% Similarity=0.335 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCC-CHHHHHHHH-cCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGt-Gl~gl~aa~-~ga~~Vv~tD~~~~vl 71 (269)
.++.+||-.|+|. |..-+.+++ .| .+|++++.+++-.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~ 171 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKL 171 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHH
Confidence 4788999999986 322222333 56 4899999987644
No 385
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=24.57 E-value=1.7e+02 Score=25.91 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=39.6
Q ss_pred CceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHH----HcC-CCeEEEEeCCH
Q 024311 9 FLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC----LKG-AGTVHFQDLSA 68 (269)
Q Consensus 9 G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa----~~g-a~~Vv~tD~~~ 68 (269)
|.++|.+-.+|..|=.-. +..+...|+|.|.--|-..|..| ..| .-+|+..|++-
T Consensus 48 G~p~~k~p~D~~~yQell-----w~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi 107 (237)
T COG3510 48 GIPCIKSPSDMWNYQELL-----WELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDI 107 (237)
T ss_pred cccccCCHHHHHHHHHHH-----HhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEeccc
Confidence 778899888888775433 24466789999999986666543 345 23799999864
No 386
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=24.46 E-value=59 Score=29.76 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=41.2
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
..|++.|.++.. ++.+.+|--||.|.+-|.++.. .++++.|+|++++..- ..++.+.+
T Consensus 13 ~~l~~~i~~~lP------~~~~y~EPF~GggaV~i~~~~~--~~~i~~Din~~Lvn~y--~~l~~~~~ 70 (274)
T COG0338 13 SKLLDQIIPHLP------EGVSYIEPFVGGGAVFINLAAK--KKYILNDINPDLVNLY--NILKDDTE 70 (274)
T ss_pred HHHHHHHHHhCC------CCceeeCCccCcceeeeehhhh--hhhhHhcCCHHHHHHH--HHHHhHHH
Confidence 356677777641 2339999999999887776654 6899999999998653 44444443
No 387
>PRK08703 short chain dehydrogenase; Provisional
Probab=24.36 E-value=2.5e+02 Score=23.76 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCCCCHHHHH----HHHcCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIF----ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~----aa~~ga~~Vv~tD~~~~vl 71 (269)
+++++||=.||+.| .|.. ++..|+ +|++++.+++-+
T Consensus 4 l~~k~vlItG~sgg-iG~~la~~l~~~g~-~V~~~~r~~~~~ 43 (239)
T PRK08703 4 LSDKTILVTGASQG-LGEQVAKAYAAAGA-TVILVARHQKKL 43 (239)
T ss_pred CCCCEEEEECCCCc-HHHHHHHHHHHcCC-EEEEEeCChHHH
Confidence 57889999997554 4433 334576 799999988654
No 388
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=24.10 E-value=1.4e+02 Score=27.34 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=25.8
Q ss_pred CCCCEEEEEcCCC-CHHHHHHH-HcCCCeEEEEeCCHHHHH
Q 024311 34 FRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 34 ~~~~~VLELGcGt-Gl~gl~aa-~~ga~~Vv~tD~~~~vl~ 72 (269)
..|.+||=+|||. |+..+.+| ..|+ +|+++|.+++-++
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~ 204 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLE 204 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHH
Confidence 4688999999843 33333333 3577 7999999887653
No 389
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=23.99 E-value=2.5e+02 Score=23.50 Aligned_cols=43 Identities=23% Similarity=0.162 Sum_probs=25.3
Q ss_pred EEEEcCCCCHHHHH--HHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 39 VLELSCGYGLPGIF--ACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 39 VLELGcGtGl~gl~--aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
|-=+|+|+=-.|++ ++..|. +|++.|.+++.++.. ...+..++
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~-~~~i~~~l 46 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERA-RKRIERLL 46 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHH-HHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhh-hhHHHHHH
Confidence 44577765323333 445676 899999999998654 34444444
No 390
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=23.56 E-value=87 Score=23.90 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=19.2
Q ss_pred CCCHHHHHHHH-cCCCeEEEEeCCHHHH
Q 024311 45 GYGLPGIFACL-KGAGTVHFQDLSAETI 71 (269)
Q Consensus 45 GtGl~gl~aa~-~ga~~Vv~tD~~~~vl 71 (269)
|.|+..+.+|+ .| .+|+++|.+++-+
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~ 27 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKL 27 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHH
Confidence 45777765554 67 5999999998755
No 391
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=23.50 E-value=3.2e+02 Score=21.41 Aligned_cols=30 Identities=30% Similarity=0.319 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCHHHHH----HHHcCCCeEEEEeCC
Q 024311 37 KRVLELSCGYGLPGIF----ACLKGAGTVHFQDLS 67 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~----aa~~ga~~Vv~tD~~ 67 (269)
|+||=.|++.|+ |.. ++..|+.+|+++..+
T Consensus 1 k~~lItGa~~gi-G~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 1 KTVLITGASSGI-GRALARALARRGARVVILTSRS 34 (167)
T ss_dssp EEEEEETTTSHH-HHHHHHHHHHTTTEEEEEEESS
T ss_pred CEEEEECCCCHH-HHHHHHHHHhcCceEEEEeeec
Confidence 467778888664 333 344677789999998
No 392
>PRK14851 hypothetical protein; Provisional
Probab=23.50 E-value=45 Score=34.45 Aligned_cols=38 Identities=21% Similarity=0.171 Sum_probs=30.0
Q ss_pred CCCCCCEEEEEcCC-CCHH-HHHHHHcCCCeEEEEeCCHH
Q 024311 32 LSFRGKRVLELSCG-YGLP-GIFACLKGAGTVHFQDLSAE 69 (269)
Q Consensus 32 ~~~~~~~VLELGcG-tGl~-gl~aa~~ga~~Vv~tD~~~~ 69 (269)
..+++.+|+=+||| .|-. ...+++.|..++++.|.+.-
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~v 78 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQF 78 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEe
Confidence 45688999999999 5643 35577889999999999753
No 393
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.22 E-value=2.6e+02 Score=24.42 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=29.1
Q ss_pred CCCCCEEEEEcCCCCHHH---HHHHHcCCCeEEEEeCCHHHH
Q 024311 33 SFRGKRVLELSCGYGLPG---IFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~g---l~aa~~ga~~Vv~tD~~~~vl 71 (269)
.+.|+.||--|+|.|+-- +.++..|+ +|++.-.+++-|
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA-~ViAvaR~~a~L 44 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGA-QVIAVARNEANL 44 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCC-EEEEEecCHHHH
Confidence 457899999999988543 33566788 899998888665
No 394
>PRK09242 tropinone reductase; Provisional
Probab=23.14 E-value=3e+02 Score=23.58 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=28.4
Q ss_pred CCCCCCEEEEEcCCCCHHHHH---HHHcCCCeEEEEeCCHHHH
Q 024311 32 LSFRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~---aa~~ga~~Vv~tD~~~~vl 71 (269)
+.++++++|=.|++.|+-.-+ ++..|+ +|++++.+++-+
T Consensus 5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~ 46 (257)
T PRK09242 5 WRLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADAL 46 (257)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHH
Confidence 456899999999977654432 344677 899999987655
No 395
>PRK05717 oxidoreductase; Validated
Probab=22.90 E-value=1.9e+02 Score=24.85 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=27.1
Q ss_pred CCCCCCCEEEEEcCCCCHHHHH---HHHcCCCeEEEEeCCHH
Q 024311 31 QLSFRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAE 69 (269)
Q Consensus 31 ~~~~~~~~VLELGcGtGl~gl~---aa~~ga~~Vv~tD~~~~ 69 (269)
+..++|++||=.|++.|+-.-+ ++..|+ +|+++|.++.
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~ 45 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRE 45 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHH
Confidence 4678899999999876653322 334576 8999998764
No 396
>PRK05866 short chain dehydrogenase; Provisional
Probab=22.67 E-value=5.5e+02 Score=22.85 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=28.1
Q ss_pred CCCCCCEEEEEcCCCCHHHHH---HHHcCCCeEEEEeCCHHHH
Q 024311 32 LSFRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~---aa~~ga~~Vv~tD~~~~vl 71 (269)
..+.+++||=.|++.|+-.-+ ++..|. +|++++.+++-+
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l 77 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLL 77 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHH
Confidence 456789999999876653322 334566 899999987665
No 397
>PRK14852 hypothetical protein; Provisional
Probab=22.53 E-value=46 Score=35.84 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=30.5
Q ss_pred CCCCCCCEEEEEcCC-CCH-HHHHHHHcCCCeEEEEeCCHH
Q 024311 31 QLSFRGKRVLELSCG-YGL-PGIFACLKGAGTVHFQDLSAE 69 (269)
Q Consensus 31 ~~~~~~~~VLELGcG-tGl-~gl~aa~~ga~~Vv~tD~~~~ 69 (269)
+..++..+|+=+||| .|- ....+++.|..++++.|.+.-
T Consensus 327 Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~V 367 (989)
T PRK14852 327 QRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAY 367 (989)
T ss_pred HHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEe
Confidence 346788999999999 553 345677889999999999753
No 398
>PLN02494 adenosylhomocysteinase
Probab=22.38 E-value=1.7e+02 Score=29.08 Aligned_cols=55 Identities=13% Similarity=0.018 Sum_probs=34.8
Q ss_pred CCCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCC-CHHH-HHHHHcCCCeEEEEeCCHH
Q 024311 4 SKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGY-GLPG-IFACLKGAGTVHFQDLSAE 69 (269)
Q Consensus 4 g~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGt-Gl~g-l~aa~~ga~~Vv~tD~~~~ 69 (269)
..|-+|..+|++=. +. .+..+.|++|+=+|+|. |..- ..+...|+ +|+++|.++.
T Consensus 232 n~yGtgqS~~d~i~-------r~---t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~ 288 (477)
T PLN02494 232 NLYGCRHSLPDGLM-------RA---TDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPI 288 (477)
T ss_pred ccccccccHHHHHH-------Hh---cCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence 35666777655322 21 23457899999999994 3222 12334677 7999999875
No 399
>PLN02780 ketoreductase/ oxidoreductase
Probab=22.29 E-value=5.1e+02 Score=23.59 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=27.6
Q ss_pred CCCCEEEEEcCCCCHHH---HHHHHcCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPG---IFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~g---l~aa~~ga~~Vv~tD~~~~vl 71 (269)
..|+.||=.||+.|+-- ..++..|+ +|++++.+++-+
T Consensus 51 ~~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l 90 (320)
T PLN02780 51 KYGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKL 90 (320)
T ss_pred ccCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHH
Confidence 35899999998877533 22445687 799999998766
No 400
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=22.25 E-value=1.7e+02 Score=29.54 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=37.6
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHH------HcCC------CeEEEEeCC
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC------LKGA------GTVHFQDLS 67 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa------~~ga------~~Vv~tD~~ 67 (269)
+++.||-.|......+ ..+++.+||=+|||++-.|++-. ..|. +++++.|-.
T Consensus 277 aaV~lAgll~Alr~~g-~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~ 340 (559)
T PTZ00317 277 GAVIAAGFLNALKLSG-VPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSK 340 (559)
T ss_pred HHHHHHHHHHHHHHhC-CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCC
Confidence 5677888887654333 35788999999999988886521 2465 689999864
No 401
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=22.23 E-value=2.1e+02 Score=26.38 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=25.8
Q ss_pred CCCCEEEEEcCCCCHHHHHHH----HcCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFAC----LKGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa----~~ga~~Vv~tD~~~~vl 71 (269)
-.|.+||=+|+ |..|++++ ..|+.+|+++|.+++-+
T Consensus 185 ~~g~~VlV~G~--G~vG~~a~~~ak~~G~~~vi~~~~~~~~~ 224 (368)
T cd08300 185 EPGSTVAVFGL--GAVGLAVIQGAKAAGASRIIGIDINPDKF 224 (368)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHH
Confidence 36889999986 45565433 36776799999988755
No 402
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=22.22 E-value=2.1e+02 Score=25.75 Aligned_cols=36 Identities=31% Similarity=0.204 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHH----HcCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFAC----LKGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa----~~ga~~Vv~tD~~~~vl 71 (269)
..|.+||=+|+ |..|++++ ..|+++|+++|.+++-+
T Consensus 162 ~~g~~vlV~G~--G~vG~~~~~~ak~~G~~~vi~~~~~~~~~ 201 (339)
T cd08239 162 SGRDTVLVVGA--GPVGLGALMLARALGAEDVIGVDPSPERL 201 (339)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 35889999976 45554432 46775599999887654
No 403
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=22.21 E-value=90 Score=30.01 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=25.5
Q ss_pred CCCCCEEEEEcCCCC--HHHHHHHHcCCCeEEEEe
Q 024311 33 SFRGKRVLELSCGYG--LPGIFACLKGAGTVHFQD 65 (269)
Q Consensus 33 ~~~~~~VLELGcGtG--l~gl~aa~~ga~~Vv~tD 65 (269)
.++|.+||||+-... ++|.++|-+|| .|+=.+
T Consensus 11 pL~GirVldls~~~aGP~a~~lLAdlGA-eVIKVE 44 (405)
T PRK03525 11 PLAGLRVVFSGIEIAGPFAGQMFAEWGA-EVIWIE 44 (405)
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHcCC-cEEEEC
Confidence 479999999988753 56678888998 687776
No 404
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=22.08 E-value=53 Score=30.96 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=28.2
Q ss_pred CCCCCCEEEEEcCCC-CHHH-HHHHHcCCCeEEEEeCCH
Q 024311 32 LSFRGKRVLELSCGY-GLPG-IFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 32 ~~~~~~~VLELGcGt-Gl~g-l~aa~~ga~~Vv~tD~~~ 68 (269)
..+++++||=+|||. |-.- ..+++.|.+++++.|.+.
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 456889999999983 3222 446778999999999864
No 405
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=21.95 E-value=1.7e+02 Score=26.58 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=25.5
Q ss_pred CCCCEEEEEcCCCCHHHHHH----HHcCCCeEEEEeCCHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFA----CLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~a----a~~ga~~Vv~tD~~~~vl~ 72 (269)
..|.+||=+||| ..|+++ ...|++.|+++|.+++-++
T Consensus 159 ~~g~~vlV~G~g--~vG~~~~~~a~~~G~~~v~~~~~~~~~~~ 199 (347)
T PRK10309 159 CEGKNVIIIGAG--TIGLLAIQCAVALGAKSVTAIDINSEKLA 199 (347)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHcCCCeEEEECCCHHHHH
Confidence 367899999864 455443 2468766889998887553
No 406
>PRK06125 short chain dehydrogenase; Provisional
Probab=21.90 E-value=5.1e+02 Score=22.17 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=27.4
Q ss_pred CCCCCEEEEEcCCCCHHHHH---HHHcCCCeEEEEeCCHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~---aa~~ga~~Vv~tD~~~~vl 71 (269)
.+++++||=.|++.|+-.-+ ++..|+ +|++++.+++-+
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~ 44 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADAL 44 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHH
Confidence 35789999999876644322 345677 899999987655
No 407
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=21.67 E-value=1.3e+02 Score=29.15 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcCC-CCHHHH--HHHHcCCCeEEEEeCCH
Q 024311 33 SFRGKRVLELSCG-YGLPGI--FACLKGAGTVHFQDLSA 68 (269)
Q Consensus 33 ~~~~~~VLELGcG-tGl~gl--~aa~~ga~~Vv~tD~~~ 68 (269)
..++++|+=+|.| +|+.++ ++...|+ +|+++|..+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~ 41 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKE 41 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCC
Confidence 4577889988887 565533 3556787 899999854
No 408
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=21.62 E-value=90 Score=28.68 Aligned_cols=49 Identities=18% Similarity=0.034 Sum_probs=33.2
Q ss_pred CCCCCCCEEEEEcCCC-CHHH-HHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 31 QLSFRGKRVLELSCGY-GLPG-IFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 31 ~~~~~~~~VLELGcGt-Gl~g-l~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
+..++..+||=+|||- |.+- ..++..|.+++++.|.+.-- ..|+..|+-
T Consensus 21 Q~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve-----~SNL~RQfl 71 (287)
T PTZ00245 21 QQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVT-----DADVCTNYL 71 (287)
T ss_pred HHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccc-----hhhhccccc
Confidence 3456788999999973 3222 23566788999999986532 267766653
No 409
>PRK05872 short chain dehydrogenase; Provisional
Probab=21.59 E-value=3.1e+02 Score=24.41 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=28.4
Q ss_pred CCCCCCEEEEEcCCCCHHHHH---HHHcCCCeEEEEeCCHHHH
Q 024311 32 LSFRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~---aa~~ga~~Vv~tD~~~~vl 71 (269)
..+++++||=.|++.|+-.-+ ++..|+ +|++++.+++-+
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l 46 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAEL 46 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 356899999999877754422 344677 899999987655
No 410
>PRK06138 short chain dehydrogenase; Provisional
Probab=21.35 E-value=4.9e+02 Score=21.91 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=26.5
Q ss_pred CCCCEEEEEcCCCCHHHHH---HHHcCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~---aa~~ga~~Vv~tD~~~~vl 71 (269)
++++++|=.||..|+-.-+ ++..|+ +|++++.+++.+
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~ 42 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAA 42 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHH
Confidence 4788999999976655533 234576 899999987644
No 411
>PRK06153 hypothetical protein; Provisional
Probab=21.25 E-value=1.1e+02 Score=29.58 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=28.6
Q ss_pred CCCCCEEEEEcCC-CCH-HHHHHHHcCCCeEEEEeCCH
Q 024311 33 SFRGKRVLELSCG-YGL-PGIFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 33 ~~~~~~VLELGcG-tGl-~gl~aa~~ga~~Vv~tD~~~ 68 (269)
.+++++|+=+||| +|- ....+|+.|.+++++.|.+.
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 4678899999998 453 33557888999999999864
No 412
>PRK13529 malate dehydrogenase; Provisional
Probab=21.14 E-value=2e+02 Score=29.19 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=37.4
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHH---HH---HcCC------CeEEEEeCC
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIF---AC---LKGA------GTVHFQDLS 67 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~---aa---~~ga------~~Vv~tD~~ 67 (269)
+++.||-.|......+ ..+++.+|+=+|||+.-.|++ +. ..|. +++++.|..
T Consensus 275 aaV~LAgll~A~r~~g-~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~ 338 (563)
T PRK13529 275 GAVTLAGLLAALKITG-EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQ 338 (563)
T ss_pred HHHHHHHHHHHHHHhC-CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCC
Confidence 5778888887654333 357888999999999877765 21 2355 589999875
No 413
>PRK06139 short chain dehydrogenase; Provisional
Probab=21.11 E-value=4.9e+02 Score=23.88 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=27.9
Q ss_pred CCCCEEEEEcCCCCHHHHH---HHHcCCCeEEEEeCCHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~---aa~~ga~~Vv~tD~~~~vl~ 72 (269)
+++++||=.|++.|+-.-+ ++..|+ +|++++.+++-++
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~ 45 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQ 45 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence 5788999999976654422 345677 7999999987663
No 414
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=20.89 E-value=54 Score=31.34 Aligned_cols=46 Identities=20% Similarity=0.366 Sum_probs=31.8
Q ss_pred CCCCCEEEEEcCCC-CH-HHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 33 SFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 33 ~~~~~~VLELGcGt-Gl-~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
.+++.+||=+|||- |. ....+++.|.+++++.|.+.-- ..|+.+++
T Consensus 39 ~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve-----~sNL~Rq~ 86 (392)
T PRK07878 39 RLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVD-----ESNLQRQV 86 (392)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEec-----Cccccccc
Confidence 45788999999993 32 2234667899999999986422 25665544
No 415
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=20.66 E-value=2.1e+02 Score=29.63 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=35.0
Q ss_pred CceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCC------HHHHHHHHcCCCeEEEEeCC
Q 024311 9 FLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYG------LPGIFACLKGAGTVHFQDLS 67 (269)
Q Consensus 9 G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtG------l~gl~aa~~ga~~Vv~tD~~ 67 (269)
|+..=++=..|++.+.+........-.+.-|+|-|.||| +|++..|....++|+++-..
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T 87 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTAT 87 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCC
Confidence 344444556777777766432100012457899999999 66666565444577776553
No 416
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=20.62 E-value=89 Score=30.81 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCHHH-HHHHHcCCCeEEEEeCCH
Q 024311 36 GKRVLELSCGYGLPG-IFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 36 ~~~VLELGcGtGl~g-l~aa~~ga~~Vv~tD~~~ 68 (269)
...||=+|+|.|+.. +.|+..|+ +|++.|-.+
T Consensus 7 ~~DVvVVG~GaGl~aA~~aa~~G~-~V~vlEk~~ 39 (513)
T PRK12837 7 EVDVLVAGSGGGVAGAYTAAREGL-SVALVEATD 39 (513)
T ss_pred ccCEEEECchHHHHHHHHHHHCCC-cEEEEecCC
Confidence 346899999944433 44666777 788887543
No 417
>PRK08324 short chain dehydrogenase; Validated
Probab=20.39 E-value=9.3e+02 Score=24.61 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=26.9
Q ss_pred CCCCCEEEEEcCCCCHHHHH---HHHcCCCeEEEEeCCHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~---aa~~ga~~Vv~tD~~~~vl 71 (269)
.+.|++||=.|++.|+-..+ ++..|+ +|+++|.+++-+
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~ 459 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAA 459 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHH
Confidence 45789999999865543322 334677 899999988655
No 418
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=20.31 E-value=1.1e+02 Score=30.42 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=24.1
Q ss_pred CCCCCEEEEEcCCCC-HHHH-HHHHcCCCeEEEEeCC
Q 024311 33 SFRGKRVLELSCGYG-LPGI-FACLKGAGTVHFQDLS 67 (269)
Q Consensus 33 ~~~~~~VLELGcGtG-l~gl-~aa~~ga~~Vv~tD~~ 67 (269)
...|++|+=+|+|.. +... .++..|+ +|++.|-.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 347899999999964 4432 3445787 79999853
No 419
>smart00467 GS GS motif. Aa approx. 30 amino acid motif that precedes the kinase domain in types I and II TGF beta receptors. Mutation of two or more of the serines or threonines in the TTSGSGSG of TGF-beta type I receptor impairs phosphorylation and signaling activity.
Probab=20.31 E-value=51 Score=19.89 Aligned_cols=10 Identities=40% Similarity=0.730 Sum_probs=7.2
Q ss_pred cCCCCHHHHH
Q 024311 43 SCGYGLPGIF 52 (269)
Q Consensus 43 GcGtGl~gl~ 52 (269)
|+|+|+|-+.
T Consensus 13 GSGSG~p~Lv 22 (30)
T smart00467 13 GSGSGLPLLV 22 (30)
T ss_pred CCCCCchhHH
Confidence 7888877654
No 420
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=20.15 E-value=1.4e+02 Score=27.35 Aligned_cols=35 Identities=29% Similarity=0.497 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCHHHHHH----HHcCCCeEEEEeCCHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFA----CLKGAGTVHFQDLSAET 70 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~a----a~~ga~~Vv~tD~~~~v 70 (269)
+.+++|+=+|||. .|..+ ...|+.+|+++|.+++-
T Consensus 176 l~~~~V~ViGaG~--iG~~~a~~L~~~g~~~V~v~~r~~~r 214 (311)
T cd05213 176 LKGKKVLVIGAGE--MGELAAKHLAAKGVAEITIANRTYER 214 (311)
T ss_pred ccCCEEEEECcHH--HHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence 5789999998853 44332 22467789999998753
No 421
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=20.10 E-value=2.4e+02 Score=25.93 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=26.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHH----HcCCCeEEEEeCCHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFAC----LKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa----~~ga~~Vv~tD~~~~vl~ 72 (269)
..|.+||=.|+ |..|++++ ..|+++|+++|.+++-++
T Consensus 186 ~~g~~VlV~G~--g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~ 226 (369)
T cd08301 186 KKGSTVAIFGL--GAVGLAVAEGARIRGASRIIGVDLNPSKFE 226 (369)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence 46889999876 56665433 367768999999887553
Done!